Citrus Sinensis ID: 045674

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650
Protein Sequence
MRRVLRRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHccccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
cccccccccccHHHcccccccccHHHHHHHHHHHHHcccccccccHHHHHHHHHHHccHcHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHcccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEHHHHHHHHHHccccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHccccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccccccEEEEEEEEcc
Coil and Loop (DISEMBL)
mrrvlrrpfsatllqsppklklppykpgnnvgsprnmgplasftsnprsansfpppewvepfndvsdlvscpqnlnpspwVRQILNlldgssdmEANLDSFCRKFLIKLSPNFVSFVLrnhdvskrpnvgLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMkengiepslYTYNFLMNGLVNSMFIESSELVFKVMengkvgpdvvTYNTMIKGYCKVGKTQKAMEKFRAMEarnvqpdkiTYMTLIQACYLEGDFDSCLSLYHEMDekgieipshaYNLVIGGLckvgkciegHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERmkyegvepdevTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVekgcprdsycYNVLIDALAKCGKLDEALALFKRmedegcdqtVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILdelapkgiipetAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIgvgydrmgsIKRRVKFRSLVES
Flexible Loop (DISEMBL)
mrrvlrrpfsatllqsppklklppyKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVlrnhdvskrpnvGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMearnvqpdkiTYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKrmedegcdQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDElapkgiipetaFEDMITCLCKTGRIKEACKLadgivdrereipGKIRTALINALRKAGNADLAIKLMHSkigvgydrmgsikrrvkfrslves
Low Complexity Region (SEG)
MRRVLRRPFSATllqsppklklppykpGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES
Disordered region (IsUnstruct)
*********************************************************WVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV********
Disordered Region (DISOPRED)
********************************************S***********EWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES
Disordered Region (DISEMBL)
MRRVLRRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES
Disordered Region (DISPRO)
*****RRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MRRVLRRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	650	2.2.26 [Sep-21-2011]
Q9LR67	660	Pentatricopeptide repeat-	yes	no	1.0	0.984	0.689	0.0
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.767	0.661	0.297	8e-66
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.736	0.641	0.298	1e-60
Q0WKV3	637	Pentatricopeptide repeat-	no	no	0.769	0.784	0.305	1e-60
Q9M907	871	Pentatricopeptide repeat-	no	no	0.712	0.531	0.304	7e-60
Q9LPX2	644	Pentatricopeptide repeat-	no	no	0.696	0.703	0.297	2e-57
Q9LQ16	632	Pentatricopeptide repeat-	no	no	0.744	0.765	0.282	6e-57
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.683	0.723	0.297	9e-57
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.678	0.604	0.303	9e-57
O49436	660	Pentatricopeptide repeat-	no	no	0.772	0.760	0.287	1e-56

>sp|Q9LR67|PPR9_ARATH Pentatricopeptide repeat-containing protein At1g03560, mitochondrial OS=Arabidopsis thaliana GN=At1g03560 PE=2 SV=1

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/656 (68%), Positives = 540/656 (82%), Gaps = 6/656 (0%)

Query: 1   MRRVLRRPFSATLLQSP--PKLKLPPYKPGNNVGSPRNMGPLASFTSNPR---SANSFPP 55
           MRR  R+PFS  LL  P         YK G+ +       PL+S  ++ R   +++S PP
Sbjct: 1   MRRFYRKPFSVPLLNRPHCSSQSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLPP 60

Query: 56  PEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVS 115
           PEW+EPFNDVSDLV   +NL PSPWV QILNLLDGS+ ME+NLD FCRKFLIKLSPNFVS
Sbjct: 61  PEWIEPFNDVSDLVKSNRNLLPSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVS 120

Query: 116 FVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKE 175
           FVL++ ++ ++P++    F W+ +QKKY+HNLECY+SL+D LAL  DVDR+R V +E+K+
Sbjct: 121 FVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKK 180

Query: 176 KGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIES 235
             F MTVSAAN+LIKSFG LGMVEELLWVWR MKENGIEP+LYTYNFLMNGLV++MF++S
Sbjct: 181 FEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDS 240

Query: 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
           +E VF+VME+G++ PD+VTYNTMIKGYCK G+TQKAMEK R ME R  + DKITYMT+IQ
Sbjct: 241 AERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQ 300

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
           ACY + DF SC++LY EMDEKGI++P HA++LVIGGLCK GK  EG+ +FE+MIR+G +P
Sbjct: 301 ACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKP 360

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           NVAIYT LID YAK GS+ +AI +  RM  EG +PD VTY V+++GLCKN R+EEA+ YF
Sbjct: 361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 420

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
             CR +G+A+N+MFYSSLIDGLGKAGRVDEAE LFEEM EKGC RDSYCYN LIDA  K 
Sbjct: 421 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 476 GKLDEALALFKRM-EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS 534
            K+DEA+ALFKRM E+EGCDQTVYTYTIL++GMFKEHRNEEALKLWDMMIDKGITPTAA 
Sbjct: 481 RKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAAC 540

Query: 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594
           FRALS GLCLSGKVARACKILDELAP G+I + A EDMI  LCK GRIKEACKLADGI +
Sbjct: 541 FRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITE 600

Query: 595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           R RE+PG+IRT +INALRK G ADLA+KLMHSKIG+GY+RMGS+KRRVKF +L+E+
Sbjct: 601 RGREVPGRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLET 656

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  252 bits (643), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 160/537 (29%), Positives = 265/537 (49%), Gaps = 38/537 (7%)

Query: 128 NVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANS 187
           +  LRLF  A+++  +S     Y  ++  L   G  D ++ +  ++K     M  S    
Sbjct: 64  SAALRLFNLASKKPNFSPEPALYEEILLRLGRSGSFDDMKKILEDMKSSRCEMGTSTFLI 123

Query: 188 LIKSFGGLGMVEELLWVWRSM-KENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENG 246
           LI+S+    + +E+L V   M  E G++P  + YN ++N LV+   ++  E+    M   
Sbjct: 124 LIESYAQFELQDEILSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVW 183

Query: 247 KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC 306
            + PDV T+N +IK  C+  + + A+     M +  + PD+ T+ T++Q    EGD D  
Sbjct: 184 GIKPDVSTFNVLIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGA 243

Query: 307 LSLYHEMDEKGIEIPSHAYNLVIGGLCKVGK----------------------------- 337
           L +  +M E G    + + N+++ G CK G+                             
Sbjct: 244 LRIREQMVEFGCSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVN 303

Query: 338 --CIEGHA-----IFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEP 390
             C  GH      I + M++ G  P+V  Y ++I    KLG + EA+ + ++M      P
Sbjct: 304 GLCKAGHVKHAIEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSP 363

Query: 391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELF 450
           + VTY  +IS LCK  ++EEA +      + G+  +   ++SLI GL        A ELF
Sbjct: 364 NTVTYNTLISTLCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELF 423

Query: 451 EEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE 510
           EEM  KGC  D + YN+LID+L   GKLDEAL + K+ME  GC ++V TY  LI+G  K 
Sbjct: 424 EEMRSKGCEPDEFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKA 483

Query: 511 HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET-AF 569
           ++  EA +++D M   G++  + ++  L  GLC S +V  A +++D++  +G  P+   +
Sbjct: 484 NKTREAEEIFDEMEVHGVSRNSVTYNTLIDGLCKSRRVEDAAQLMDQMIMEGQKPDKYTY 543

Query: 570 EDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS 626
             ++T  C+ G IK+A  +   +     E        LI+ L KAG  ++A KL+ S
Sbjct: 544 NSLLTHFCRGGDIKKAADIVQAMTSNGCEPDIVTYGTLISGLCKAGRVEVASKLLRS 600

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 148/495 (29%), Positives = 243/495 (49%), Gaps = 16/495 (3%)

Query: 140 QKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVE 199
           + + S N+  Y  LI      G++D    +F++++ KG L  V   N+LI  +  L  ++
Sbjct: 198 ESQVSPNVFTYNILIRGFCFAGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKID 257

Query: 200 ELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMI 259
           +   + RSM   G+EP+L +YN ++NGL     ++    V   M       D VTYNT+I
Sbjct: 258 DGFKLLRSMALKGLEPNLISYNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLI 317

Query: 260 KGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE 319
           KGYCK G   +A+     M    + P  ITY +LI +    G+ +  +    +M  +G+ 
Sbjct: 318 KGYCKEGNFHQALVMHAEMLRHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLC 377

Query: 320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINI 379
                Y  ++ G  + G   E + +   M   G  P+V  Y ALI+ +   G M +AI +
Sbjct: 378 PNERTYTTLVDGFSQKGYMNEAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAV 437

Query: 380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK 439
            E MK +G+ PD V+Y  ++SG C++  ++EA++        G+  + + YSSLI G  +
Sbjct: 438 LEDMKEKGLSPDVVSYSTVLSGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCE 497

Query: 440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT 499
             R  EA +L+EEM+  G P D + Y  LI+A    G L++AL L   M ++G    V T
Sbjct: 498 QRRTKEACDLYEEMLRVGLPPDEFTYTALINAYCMEGDLEKALQLHNEMVEKGVLPDVVT 557

Query: 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL----------SI-----GLCL 544
           Y++LING+ K+ R  EA +L   +  +   P+  ++  L          S+     G C+
Sbjct: 558 YSVLINGLNKQSRTREAKRLLLKLFYEESVPSDVTYHTLIENCSNIEFKSVVSLIKGFCM 617

Query: 545 SGKVARACKILDELAPKGIIPE-TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKI 603
            G +  A ++ + +  K   P+ TA+  MI   C+ G I++A  L   +V     +    
Sbjct: 618 KGMMTEADQVFESMLGKNHKPDGTAYNIMIHGHCRAGDIRKAYTLYKEMVKSGFLLHTVT 677

Query: 604 RTALINALRKAGNAD 618
             AL+ AL K G  +
Sbjct: 678 VIALVKALHKEGKVN 692

Arabidopsis thaliana (taxid: 3702)

>sp|Q0WKV3|PPR36_ARATH Pentatricopeptide repeat-containing protein At1g12300, mitochondrial OS=Arabidopsis thaliana GN=At1g12300 PE=2 SV=1

 Score =  234 bits (597), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 158/518 (30%), Positives = 251/518 (48%), Gaps = 18/518 (3%)

Query: 132 RLFTWAARQKKY---------------SHNLECYISLIDCLALCGDVDRVRLVFNELKEK 176
           RLF+  A+ K+Y               +HNL     +I+C   C  +        ++ + 
Sbjct: 93  RLFSAIAKTKQYDLVLALCKQMELKGIAHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKL 152

Query: 177 GFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGL-VNSMFIES 235
           G+       ++LI      G V E L +   M E G +P L T N L+NGL ++    E+
Sbjct: 153 GYEPNTITFSTLINGLCLEGRVSEALELVDRMVEMGHKPDLITINTLVNGLCLSGKEAEA 212

Query: 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
             L+ K++E G   P+ VTY  ++   CK G+T  AME  R ME RN++ D + Y  +I 
Sbjct: 213 MLLIDKMVEYG-CQPNAVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
                G  D+  +L++EM+ KGI      YN++IGG C  G+  +G  +   MI+R   P
Sbjct: 272 GLCKHGSLDNAFNLFNEMEMKGITTNIITYNILIGGFCNAGRWDDGAKLLRDMIKRKINP 331

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           NV  ++ LIDS+ K G + EA  + + M + G+ PD +TY  +I G CK   L++A Q  
Sbjct: 332 NVVTFSVLIDSFVKEGKLREAEELHKEMIHRGIAPDTITYTSLIDGFCKENHLDKANQMV 391

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
           +   + G   N   ++ LI+G  KA R+D+  ELF +M  +G   D+  YN LI    + 
Sbjct: 392 DLMVSKGCDPNIRTFNILINGYCKANRIDDGLELFRKMSLRGVVADTVTYNTLIQGFCEL 451

Query: 476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASF 535
           GKL+ A  LF+ M        + TY IL++G+     +E+AL++++ +    +      +
Sbjct: 452 GKLNVAKELFQEMVSRKVPPNIVTYKILLDGLCDNGESEKALEIFEKIEKSKMELDIGIY 511

Query: 536 RALSIGLCLSGKVARACKILDELAPKGIIPET-AFEDMITCLCKTGRIKEACKLADGIVD 594
             +  G+C + KV  A  +   L  KG+ P    +  MI  LCK G + EA  L   + +
Sbjct: 512 NIIIHGMCNASKVDDAWDLFCSLPLKGVKPGVKTYNIMIGGLCKKGPLSEAELLFRKMEE 571

Query: 595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY 632
                 G     LI A    G+A  ++KL+      G+
Sbjct: 572 DGHAPDGWTYNILIRAHLGDGDATKSVKLIEELKRCGF 609

Arabidopsis thaliana (taxid: 3702)

>sp|Q9M907|PP217_ARATH Pentatricopeptide repeat-containing protein At3g06920 OS=Arabidopsis thaliana GN=At3g06920 PE=2 SV=1

 Score =  232 bits (592), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 152/500 (30%), Positives = 246/500 (49%), Gaps = 37/500 (7%)

Query: 150 YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMK 209
           Y  ++ CL   G VD    VF E+K K     +S  N LI      G ++    +  SM+
Sbjct: 346 YNCILTCLRKMGKVDEALKVFEEMK-KDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQ 404

Query: 210 ENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQ 269
           + G+ P++ T N +++ L  S  ++ +  +F+ M+     PD +T+ ++I G  KVG+  
Sbjct: 405 KAGLFPNVRTVNIMVDRLCKSQKLDEACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVD 464

Query: 270 KAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEM---------------- 313
            A + +  M   + + + I Y +LI+  +  G  +    +Y +M                
Sbjct: 465 DAYKVYEKMLDSDCRTNSIVYTSLIKNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYM 524

Query: 314 --------DEKGIEI-----------PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQ 354
                    EKG  +            + +Y+++I GL K G   E + +F SM  +GC 
Sbjct: 525 DCMFKAGEPEKGRAMFEEIKARRFVPDARSYSILIHGLIKAGFANETYELFYSMKEQGCV 584

Query: 355 PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQY 414
            +   Y  +ID + K G +N+A  + E MK +G EP  VTYG +I GL K +RL+EA   
Sbjct: 585 LDTRAYNIVIDGFCKCGKVNKAYQLLEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYML 644

Query: 415 FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474
           FE  ++  + +N + YSSLIDG GK GR+DEA  + EE+++KG   + Y +N L+DAL K
Sbjct: 645 FEEAKSKRIELNVVIYSSLIDGFGKVGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVK 704

Query: 475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS 534
             +++EAL  F+ M++  C     TY ILING+ K  +  +A   W  M  +G+ P+  S
Sbjct: 705 AEEINEALVCFQSMKELKCTPNQVTYGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTIS 764

Query: 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETA-FEDMITCLCKTGRIKEACKLADGIV 593
           +  +  GL  +G +A A  + D     G +P++A +  MI  L    R  +A  L +   
Sbjct: 765 YTTMISGLAKAGNIAEAGALFDRFKANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETR 824

Query: 594 DREREIPGKIRTALINALRK 613
            R   I  K    L++ L K
Sbjct: 825 RRGLPIHNKTCVVLLDTLHK 844

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  224 bits (570), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 140/471 (29%), Positives = 235/471 (49%), Gaps = 18/471 (3%)

Query: 132 RLFTWAARQKKY---------------SHNLECYISLIDCLALCGDVDRVRLVFNELKEK 176
           RLF+  A+ K+Y               +H++     +I+C   C  +        ++ + 
Sbjct: 93  RLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKL 152

Query: 177 GFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGL-VNSMFIES 235
           G+       N+L+        V E L +   M E G +P+L T N L+NGL +N    ++
Sbjct: 153 GYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDA 212

Query: 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
             L+ +++E G   P+ VTY  ++   CK G+T  AME  R ME RN++ D + Y  +I 
Sbjct: 213 VVLIDRMVETG-FQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIID 271

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
               +G  D+  +L++EM+ KG +     YN +IGG C  G+  +G  +   MI+R   P
Sbjct: 272 GLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISP 331

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           NV  ++ LIDS+ K G + EA  + + M   G+ P+ +TY  +I G CK  RLEEA+Q  
Sbjct: 332 NVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMV 391

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
           +   + G   + M ++ LI+G  KA R+D+  ELF EM  +G   ++  YN L+    + 
Sbjct: 392 DLMISKGCDPDIMTFNILINGYCKANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQS 451

Query: 476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASF 535
           GKL+ A  LF+ M        + +Y IL++G+      E+AL+++  +    +      +
Sbjct: 452 GKLEVAKKLFQEMVSRRVRPDIVSYKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIY 511

Query: 536 RALSIGLCLSGKVARACKILDELAPKGI-IPETAFEDMITCLCKTGRIKEA 585
             +  G+C + KV  A  +   L  KG+ +   A+  MI+ LC+   + +A
Sbjct: 512 MIIIHGMCNASKVDDAWDLFCSLPLKGVKLDARAYNIMISELCRKDSLSKA 562

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LQ16|PPR94_ARATH Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana GN=At1g62910 PE=2 SV=1

 Score =  222 bits (566), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 140/495 (28%), Positives = 247/495 (49%), Gaps = 11/495 (2%)

Query: 144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203
           SH+L  Y   I+C      +     V  ++ + G+   +   +SL+  +     + + + 
Sbjct: 115 SHDLYTYSIFINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLSSLLNGYCHSKRISDAVA 174

Query: 204 VWRSMKENGIEPSLYTYNFLMNGL-VNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY 262
           +   M E G +P  +T+  L++GL +++   E+  LV ++++ G   PD+VTY T++ G 
Sbjct: 175 LVDQMVEMGYKPDTFTFTTLIHGLFLHNKASEAVALVDQMVQRG-CQPDLVTYGTVVNGL 233

Query: 263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS 322
           CK G    A+   + ME   ++ D + Y T+I         D  L+L+ EMD KGI    
Sbjct: 234 CKRGDIDLALSLLKKMEKGKIEADVVIYNTIIDGLCKYKHMDDALNLFTEMDNKGIRPDV 293

Query: 323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382
             Y+ +I  LC  G+  +   +   MI R   PNV  ++ALID++ K G + EA  +++ 
Sbjct: 294 FTYSSLISCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 353

Query: 383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442
           M    ++PD  TY  +I+G C ++RL+EA   FE   +     N + YS+LI G  KA R
Sbjct: 354 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYSTLIKGFCKAKR 413

Query: 443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502
           V+E  ELF EM ++G   ++  Y  LI    +    D A  +FK+M   G    + TY I
Sbjct: 414 VEEGMELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVFKQMVSVGVHPNILTYNI 473

Query: 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562
           L++G+ K  +  +A+ +++ +    + P   ++  +  G+C +GKV    ++   L+ KG
Sbjct: 474 LLDGLCKNGKLAKAMVVFEYLQRSTMEPDIYTYNIMIEGMCKAGKVEDGWELFCNLSLKG 533

Query: 563 IIPET-AFEDMITCLCKTGRIKEACKLADGIVDRERE---IPGK-IRTALINALRKAGNA 617
           + P   A+  MI+  C+ G  +E    AD ++ + +E   +P       LI A  + G+ 
Sbjct: 534 VSPNVIAYNTMISGFCRKGSKEE----ADSLLKKMKEDGPLPNSGTYNTLIRARLRDGDR 589

Query: 618 DLAIKLMHSKIGVGY 632
           + + +L+      G+
Sbjct: 590 EASAELIKEMRSCGF 604

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  222 bits (565), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 133/447 (29%), Positives = 229/447 (51%), Gaps = 3/447 (0%)

Query: 144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203
           SHNL  Y  +I+CL     +     +  ++ + G+  ++   NSL+  F     + E + 
Sbjct: 97  SHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVA 156

Query: 204 VWRSMKENGIEPSLYTYNFLMNGLV-NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY 262
           +   M E G +P   T+  L++GL  ++   E+  LV +++  G   PD+VTY  +I G 
Sbjct: 157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVINGL 215

Query: 263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS 322
           CK G+   A+     ME   ++ D + Y T+I +       D  L+L+ EMD KGI    
Sbjct: 216 CKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275

Query: 323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382
             Y+ +I  LC  G+  +   +   M+ R   PNV  + +LID++AK G + EA  +F+ 
Sbjct: 276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335

Query: 383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442
           M    ++P+ VTY  +I+G C ++RL+EA Q F    +     + + Y++LI+G  KA +
Sbjct: 336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query: 443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502
           V +  ELF +M  +G   ++  Y  LI    +    D A  +FK+M  +G    + TY  
Sbjct: 396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query: 503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562
           L++G+ K  + E+A+ +++ +    + P   ++  +S G+C +GKV     +   L+ KG
Sbjct: 456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515

Query: 563 IIPET-AFEDMITCLCKTGRIKEACKL 588
           + P+  A+  MI+  CK G  +EA  L
Sbjct: 516 VKPDVIAYNTMISGFCKKGLKEEAYTL 542

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  222 bits (565), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 136/448 (30%), Positives = 228/448 (50%), Gaps = 7/448 (1%)

Query: 150 YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMK 209
           Y +LI  L+ C  V+    +  E+   G +      N +I        + E   +   M 
Sbjct: 255 YQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMVNRML 314

Query: 210 ENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQ 269
             G  P   TY +LMNGL     +++++ +F  +      P++V +NT+I G+   G+  
Sbjct: 315 IRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK----PEIVIFNTLIHGFVTHGRLD 370

Query: 270 KAMEKFRAM-EARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLV 328
            A      M  +  + PD  TY +LI   + EG     L + H+M  KG +   ++Y ++
Sbjct: 371 DAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTIL 430

Query: 329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV 388
           + G CK+GK  E + +   M   G +PN   +  LI ++ K   + EA+ IF  M  +G 
Sbjct: 431 VDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGC 490

Query: 389 EPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE 448
           +PD  T+  +ISGLC+ + ++ A+       + GV  N + Y++LI+   + G + EA +
Sbjct: 491 KPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARK 550

Query: 449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF 508
           L  EMV +G P D   YN LI  L + G++D+A +LF++M  +G   +  +  ILING+ 
Sbjct: 551 LVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLC 610

Query: 509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET- 567
           +    EEA++    M+ +G TP   +F +L  GLC +G++     +  +L  +GI P+T 
Sbjct: 611 RSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGIPPDTV 670

Query: 568 AFEDMITCLCKTGRIKEACKLAD-GIVD 594
            F  +++ LCK G + +AC L D GI D
Sbjct: 671 TFNTLMSWLCKGGFVYDACLLLDEGIED 698

Arabidopsis thaliana (taxid: 3702)

>sp|O49436|PP327_ARATH Pentatricopeptide repeat-containing protein At4g20090 OS=Arabidopsis thaliana GN=EMB1025 PE=3 SV=1

 Score =  221 bits (563), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 147/511 (28%), Positives = 250/511 (48%), Gaps = 9/511 (1%)

Query: 132 RLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKS 191
           ++F  A +   +        S+I+  A  GD D V  + + ++ +  ++   +   + ++
Sbjct: 62  KMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSVEKLLSRIRLENRVIIERSFIVVFRA 121

Query: 192 FGGLGMVEELLWVWRSM-KENGIEPSLYTYNFLMNGLVNSMF----IESSELVFKVMENG 246
           +G   + ++ + ++  M  E   + S+ ++N ++N ++N       +E  + V     N 
Sbjct: 122 YGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLNVIINEGLYHRGLEFYDYVVNSNMNM 181

Query: 247 KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC 306
            + P+ +++N +IK  CK+    +A+E FR M  R   PD  TY TL+     E   D  
Sbjct: 182 NISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPERKCLPDGYTYCTLMDGLCKEERIDEA 241

Query: 307 LSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS 366
           + L  EM  +G       YN++I GLCK G       + ++M  +GC PN   Y  LI  
Sbjct: 242 VLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRVTKLVDNMFLKGCVPNEVTYNTLIHG 301

Query: 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN 426
               G +++A+++ ERM      P++VTYG +I+GL K  R  +A++        G  +N
Sbjct: 302 LCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLINGLVKQRRATDAVRLLSSMEERGYHLN 361

Query: 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK 486
              YS LI GL K G+ +EA  L+ +M EKGC  +   Y+VL+D L + GK +EA  +  
Sbjct: 362 QHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPNIVVYSVLVDGLCREGKPNEAKEILN 421

Query: 487 RMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546
           RM   GC    YTY+ L+ G FK    EEA+++W  M   G +     +  L  GLC  G
Sbjct: 422 RMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWKEMDKTGCSRNKFCYSVLIDGLCGVG 481

Query: 547 KVARACKILDELAPKGIIPET-AFEDMITCLCKTGRIKEACKLADGIVDRE--REIPGKI 603
           +V  A  +  ++   GI P+T A+  +I  LC  G +  A KL   ++ +E  +  P  +
Sbjct: 482 RVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIGSMDAALKLYHEMLCQEEPKSQPDVV 541

Query: 604 R-TALINALRKAGNADLAIKLMHSKIGVGYD 633
               L++ L    +   A+ L++S +  G D
Sbjct: 542 TYNILLDGLCMQKDISRAVDLLNSMLDRGCD 572

May play a role in embryogenesis.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	650
224127136	599	predicted protein [Populus trichocarpa]	0.918	0.996	0.779	0.0
255584056	647	pentatricopeptide repeat-containing prot	0.983	0.987	0.721	0.0
297739257	658	unnamed protein product [Vitis vinifera]	0.998	0.986	0.713	0.0
449479180	653	PREDICTED: pentatricopeptide repeat-cont	1.0	0.995	0.699	0.0
297848576	662	pentatricopeptide repeat-containing prot	1.0	0.981	0.690	0.0
449438480	651	PREDICTED: pentatricopeptide repeat-cont	0.989	0.987	0.697	0.0
15218855	660	pentatricopeptide repeat-containing prot	1.0	0.984	0.689	0.0
110738150	642	hypothetical protein [Arabidopsis thalia	0.963	0.975	0.701	0.0
293336971	640	uncharacterized protein LOC100381578 [Ze	0.927	0.942	0.529	0.0
242074484	643	hypothetical protein SORBIDRAFT_06g02992	0.941	0.951	0.529	0.0

>gi|224127136|ref|XP_002329409.1| predicted protein [Populus trichocarpa] gi|222870459|gb|EEF07590.1| predicted protein [Populus trichocarpa]

 Score =  990 bits (2559), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 467/599 (77%), Positives = 533/599 (88%), Gaps = 2/599 (0%)

Query: 53  FPPPEWVEPFNDVSDLVS-CPQNLNPSPWVRQILNLL-DGSSDMEANLDSFCRKFLIKLS 110
            PPPEW+EPFND+SD+ S  PQ+L PSPWV QI++LL DG  DME+ LD FC KFLIKLS
Sbjct: 1   LPPPEWIEPFNDLSDIASKPPQDLKPSPWVHQIMSLLLDGPVDMESRLDLFCNKFLIKLS 60

Query: 111 PNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVF 170
           PNFVSFVL++ ++ KRP++ L+ FTWA +QKKY+HNL+CY+S ID LA+ GD+D V+ VF
Sbjct: 61  PNFVSFVLKSMELQKRPDLALKFFTWAGKQKKYTHNLQCYVSSIDVLAINGDLDNVKSVF 120

Query: 171 NELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNS 230
            + +  GFLM VSAANSLIKSFG LGMVEELLWVWR MKENG+EPSL+TYNFL+NGLVNS
Sbjct: 121 CKFRGMGFLMNVSAANSLIKSFGSLGMVEELLWVWRGMKENGVEPSLFTYNFLLNGLVNS 180

Query: 231 MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITY 290
           +FIES+E V +VMENGK+GPDVVTYNTMIKGYC+VGKTQKA EKFR ME RNV PDKITY
Sbjct: 181 VFIESAERVLEVMENGKIGPDVVTYNTMIKGYCQVGKTQKAFEKFRDMELRNVAPDKITY 240

Query: 291 MTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIR 350
           MTLIQACY EGDFD CLSLYHEMDE G+EIP HAY+LVIGGLCK GKC+EG+A+FE MI+
Sbjct: 241 MTLIQACYAEGDFDLCLSLYHEMDENGLEIPPHAYSLVIGGLCKEGKCVEGYAVFEKMIQ 300

Query: 351 RGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE 410
           +GC+ NVAIYTALIDS AK G+M EA+ +FERMK EG+EPD VTYGV+++ +CK+ RL+E
Sbjct: 301 KGCKVNVAIYTALIDSNAKCGNMGEAMLLFERMKKEGLEPDVVTYGVVVNCMCKSGRLDE 360

Query: 411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLID 470
           AM+Y EFCR NGVAVNAM YSSLIDGLGKAGRV EAE+LFEEMV+KGCP DSYCYN LID
Sbjct: 361 AMEYLEFCRVNGVAVNAMLYSSLIDGLGKAGRVHEAEKLFEEMVKKGCPPDSYCYNALID 420

Query: 471 ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP 530
           ALAKCGK DEALA FKRMEDEGCDQTVYTYTI+ING+F+EH+NEEALK+WDMMIDKGITP
Sbjct: 421 ALAKCGKTDEALAFFKRMEDEGCDQTVYTYTIMINGLFREHKNEEALKMWDMMIDKGITP 480

Query: 531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLAD 590
           TAA+FRALSIGLCLSGKVARACK+LDELAP G+IPETAFEDM+  LCK GRIKEACKLAD
Sbjct: 481 TAAAFRALSIGLCLSGKVARACKLLDELAPMGVIPETAFEDMLNVLCKAGRIKEACKLAD 540

Query: 591 GIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVE 649
           G VDR REIPG++RT LINALRKAGNADLA+KLMHSKIG+GYDRMGS+KRRVKFR LVE
Sbjct: 541 GFVDRGREIPGRVRTVLINALRKAGNADLALKLMHSKIGIGYDRMGSVKRRVKFRILVE 599

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584056|ref|XP_002532772.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223527482|gb|EEF29611.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis]

 Score =  980 bits (2533), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 475/658 (72%), Positives = 554/658 (84%), Gaps = 19/658 (2%)

Query: 1   MRRVLRRP---FSATLLQSPPKLKLP-PYKPGNNVGSPRNMGPLASFTSNPR---SANSF 53
           MRRV++RP    SATL       +LP  Y  G ++            TSN R   ++NS 
Sbjct: 1   MRRVVQRPPSLLSATL----HFFQLPISYNNGESLSK-------LCLTSNRRWVFTSNSL 49

Query: 54  PPPEWVEPFNDVSDLVS-CPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPN 112
           PPPEW++PF D+SD+ S   Q+L PSPWV QIL LLDGSS+ME+NLD+FC  FLIKLSP+
Sbjct: 50  PPPEWIDPFVDLSDVASRTHQDLKPSPWVNQILALLDGSSNMESNLDTFCHMFLIKLSPS 109

Query: 113 FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNE 172
           FVSF+LR+ ++  +P+V +R FTWA +QKKY+HNLECY+SLID LA  G +D V+ VF++
Sbjct: 110 FVSFILRSTELQTKPDVAIRFFTWAGKQKKYTHNLECYVSLIDVLATNGVLDSVKSVFSK 169

Query: 173 LKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF 232
            KE G +MTV ++NSLIKSFG LGMVEE+LWVWR MKENGIEPSL++YNFL+NGLVNS F
Sbjct: 170 FKEMGLIMTVYSSNSLIKSFGNLGMVEEVLWVWRRMKENGIEPSLFSYNFLVNGLVNSKF 229

Query: 233 IESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMT 292
           IES+E VF+VMENGK+GPDVVTYNTMIKGYC+VGKT+KA EK +AME RNV PDKITYMT
Sbjct: 230 IESAERVFEVMENGKIGPDVVTYNTMIKGYCEVGKTRKAFEKLKAMELRNVAPDKITYMT 289

Query: 293 LIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG 352
           LIQACY EGDFDSCL LYHEMDEKG+EIP H Y+LVIGGLCK GK +EG+ +FE+MI +G
Sbjct: 290 LIQACYAEGDFDSCLGLYHEMDEKGLEIPPHVYSLVIGGLCKDGKRVEGYTVFENMISKG 349

Query: 353 CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAM 412
           C+ NVAIYTALIDS AK G+M EA+ +F+RMK EG+EPDEVTYGVI++ LCK+ RL+EA+
Sbjct: 350 CKANVAIYTALIDSNAKCGNMGEAMLLFKRMKKEGLEPDEVTYGVIVNSLCKSGRLDEAL 409

Query: 413 QYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL 472
           +Y EFC   GVAVNAMFYSSLIDGLGK+GRVDEAE +F EMV+KGCP DSYCYN LIDAL
Sbjct: 410 EYMEFCSGKGVAVNAMFYSSLIDGLGKSGRVDEAERIFYEMVKKGCPPDSYCYNALIDAL 469

Query: 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA 532
           AKCGK+DEALAL KRME +GCDQTVYTYTILI G+F+EHRNEEAL LWD+MIDKGITPTA
Sbjct: 470 AKCGKIDEALALSKRMEVDGCDQTVYTYTILITGLFREHRNEEALTLWDLMIDKGITPTA 529

Query: 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592
           A+FRALS GLCLSGKVARACKILDE+AP G+IPETAF+DMI  LCK GRIKEACKLADGI
Sbjct: 530 AAFRALSTGLCLSGKVARACKILDEMAPMGVIPETAFDDMINILCKAGRIKEACKLADGI 589

Query: 593 VDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           VDR REIPG++RT LINALRKAGNADLA+KLM SKIG+GYDRMGS+KRRVKFR LVES
Sbjct: 590 VDRGREIPGRVRTVLINALRKAGNADLALKLMRSKIGIGYDRMGSVKRRVKFRILVES 647

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297739257|emb|CBI28908.3| unnamed protein product [Vitis vinifera]

 Score =  979 bits (2530), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 470/659 (71%), Positives = 549/659 (83%), Gaps = 10/659 (1%)

Query: 1   MRRVLRRPFSATLLQSPPKLKLPPYKPGNNVGSPR--------NMGPLASFTSNPRSANS 52
           MR+ L + FS   L  P     PP    + +  P          +G  ++  SN R   +
Sbjct: 1   MRKTLIKRFSQAHLLLPFHSPQPPCPYNSGIFHPHLRPPPHASKLGSTSTVGSNSRWVFT 60

Query: 53  FP-PPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSP 111
            P PPEWVEP  D+SDL S PQ   PSPWV QIL LLDGS +ME+NLDS+C KFLIKLSP
Sbjct: 61  TPIPPEWVEPLYDLSDLASNPQP-QPSPWVNQILKLLDGSVNMESNLDSYCSKFLIKLSP 119

Query: 112 NFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFN 171
           NFV+FVL++  +  +P++  R F WA +QK Y H +ECY+SLID L+L  D DRVR +F 
Sbjct: 120 NFVAFVLKSDAIRGKPDIAFRFFWWAGKQKNYIHKIECYVSLIDVLSLSSDFDRVRCIFG 179

Query: 172 ELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSM 231
           E KEKGFLMTV AANSLI+SFG LGMVEELLWVWR MKE+GIEPSLYT+NFL+NGLVNSM
Sbjct: 180 EFKEKGFLMTVFAANSLIRSFGALGMVEELLWVWRRMKESGIEPSLYTFNFLLNGLVNSM 239

Query: 232 FIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYM 291
           FIES+E VF+VME GK+GPDVV+YNTMIKGYCK G T+KAMEKF  ME RN++PDKITY+
Sbjct: 240 FIESAERVFEVMECGKIGPDVVSYNTMIKGYCKAGNTKKAMEKFTDMEKRNLEPDKITYL 299

Query: 292 TLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR 351
           TLIQACY EG+FDSCL LY EM+E+G+EIP HAY+LVIGGLCK G+ +EG ++FE+M ++
Sbjct: 300 TLIQACYSEGNFDSCLHLYQEMEERGLEIPPHAYSLVIGGLCKDGRTVEGSSVFENMNKK 359

Query: 352 GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEA 411
           GC+ NVAIYTALID+Y K G++NEAIN+FERMK EG EPD+VTYGVI++GLCK+ RL+EA
Sbjct: 360 GCKANVAIYTALIDAYGKNGNVNEAINLFERMKGEGFEPDDVTYGVIVNGLCKSGRLDEA 419

Query: 412 MQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471
           ++YFEFC+ N VAVNAMFYSSLIDGLGKAGRVDEAE+ FEEMVE+GCP+DSYCYN LIDA
Sbjct: 420 VEYFEFCKDNEVAVNAMFYSSLIDGLGKAGRVDEAEKFFEEMVERGCPQDSYCYNALIDA 479

Query: 472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT 531
           LAK GK++EAL LFKRME EGCDQTVYTYTILI+G+FKEHRNEEALKLWD+MIDKGITPT
Sbjct: 480 LAKSGKMEEALVLFKRMEKEGCDQTVYTYTILISGLFKEHRNEEALKLWDLMIDKGITPT 539

Query: 532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG 591
            ASFRALS+GLCLSGKVARACKILDELAP G+IPETAFEDMI  LCK GR ++ACKLADG
Sbjct: 540 TASFRALSVGLCLSGKVARACKILDELAPMGVIPETAFEDMINVLCKAGRTEQACKLADG 599

Query: 592 IVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           IVDR RE+PG++RT LINALRKAGNADLA+KLMHSKIG+GYDRMGSIKRRVKFR LV+S
Sbjct: 600 IVDRGREVPGRVRTILINALRKAGNADLAMKLMHSKIGIGYDRMGSIKRRVKFRVLVDS 658

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449479180|ref|XP_004155527.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like [Cucumis sativus]

 Score =  956 bits (2471), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 457/653 (69%), Positives = 539/653 (82%), Gaps = 3/653 (0%)

Query: 1   MRRVLRRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPR---SANSFPPPE 57
           MRR L RP        P  L  P        G   + G    F+ N R   +    PPPE
Sbjct: 1   MRRALLRPSFRCSSSRPLHLLDPKSYSLYGNGKLSSKGSDYGFSQNFRFVFTNTLLPPPE 60

Query: 58  WVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFV 117
           W+EPF DVSD++S  Q L+PSPWV QILNLLDGSS+ME NLDSFCRKF +KLSPNFV+FV
Sbjct: 61  WIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPNFVTFV 120

Query: 118 LRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG 177
           L++ ++ ++P V +R F WA +QKKY H +EC++SLI+ L    D+ ++RLVF ELK++G
Sbjct: 121 LQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFELKDRG 180

Query: 178 FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSE 237
            LMT SAANSLIKSFG LG+VEELLWVWR MKENGI+PSLYTYNFL+NGLVNSMFIES+E
Sbjct: 181 LLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMFIESAE 240

Query: 238 LVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQAC 297
            VF+VM+ GK+ PD VTYN MIKGYCK GK QKAMEKFR ME +NV+PDKITYMTLIQAC
Sbjct: 241 KVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMTLIQAC 300

Query: 298 YLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV 357
           Y E DFD+CLSLY EM+E+G+EIP H+Y+LVIGGLCK  KC+E +A+FE+M ++GC+ NV
Sbjct: 301 YSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKGCRANV 360

Query: 358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEF 417
           AIYTALIDSY+K GSM EA+ +FERMK EG EPD VTY V+++GLCK+ RL++ M+ F+F
Sbjct: 361 AIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGMELFDF 420

Query: 418 CRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK 477
           CR  GVA+NAMFY+SLIDGLGKAGR+++AE LFEEM EKGC RDSYCYN +IDALAK GK
Sbjct: 421 CRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDALAKHGK 480

Query: 478 LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA 537
           +D+ALALF RME+EGCDQTVYT+TILI+G+FKEH+NEEA+K WD MIDKGITPT ASFRA
Sbjct: 481 IDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTVASFRA 540

Query: 538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER 597
           L+IGLCL GKVARACKILD+LAP GIIPETAFEDMI  LCK  RIKEACKLADGIVDR R
Sbjct: 541 LAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGIVDRGR 600

Query: 598 EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           EIPG+IRT LINALRKAGN+DL IKLMHSKIG+GYDRMGSIKRRVKFR+L+E+
Sbjct: 601 EIPGRIRTVLINALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 653

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297848576|ref|XP_002892169.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297338011|gb|EFH68428.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  954 bits (2467), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 453/656 (69%), Positives = 541/656 (82%), Gaps = 6/656 (0%)

Query: 1   MRRVLRRPFSATLLQSP--PKLKLPPYKPGNNVGSPRNMGPLASFTSNPR---SANSFPP 55
           MRR  R+PFS  LL  P      L  YK G+ +       PL+S  ++ R   +++S PP
Sbjct: 1   MRRFYRKPFSLALLNRPHCSSQSLCLYKNGDFLSDDSKCLPLSSSRTSVRWVFNSSSLPP 60

Query: 56  PEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVS 115
           PEW+EPFNDVSDLV   +NL PSPWV QILNLLDGS+ ME+NLD FCRKFLIKLSPNFVS
Sbjct: 61  PEWIEPFNDVSDLVKSNRNLQPSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVS 120

Query: 116 FVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKE 175
           FVL++ ++ ++P++    F W+ +QKKY+HNLECY+SL+D LAL  DVDR+R + +E+++
Sbjct: 121 FVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFICSEIRK 180

Query: 176 KGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIES 235
             F MTVS  NSLIKSFG LGMVEELLWVWR MKENGIEP+LYTYNFLMNGLV++MF++S
Sbjct: 181 FEFPMTVSPGNSLIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDS 240

Query: 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
           +E VF+VME+G++ PDVVTYNTMIKGYCK G+TQKA+EK R ME + ++ DKITYMT+IQ
Sbjct: 241 AERVFEVMESGRIKPDVVTYNTMIKGYCKAGQTQKALEKLRVMETKGLEADKITYMTMIQ 300

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
           ACY + DF SC++LY EMDEKG+++P HA++LVIGGLCK GK  EG+A+FE+MIR+G +P
Sbjct: 301 ACYADSDFSSCVALYQEMDEKGLQVPPHAFSLVIGGLCKEGKLNEGYAVFENMIRKGSKP 360

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           NVAIYT LID YAK GS+ +AI +  RM  EG  PD VTY V+++GLCKN R+EEAM YF
Sbjct: 361 NVAIYTVLIDGYAKTGSVEDAIRLLHRMIDEGFNPDVVTYSVVVNGLCKNGRVEEAMDYF 420

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
           + CR NG+A+N+MFYSSLIDGLGKAGRVDEAE LFEEM EKGC RDSYCYN LIDA  K 
Sbjct: 421 QTCRFNGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 476 GKLDEALALFKRM-EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS 534
           GK+DEALALFKRM E+EGCDQTVYTYTILI+GMFKEHRNEEALKLWDMMIDKGITPTAA 
Sbjct: 481 GKVDEALALFKRMEEEEGCDQTVYTYTILISGMFKEHRNEEALKLWDMMIDKGITPTAAC 540

Query: 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594
            RALS GLCLSGKVARACKILDELAP G+I + A EDMI  LCK GRIKEACKLADGI +
Sbjct: 541 LRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITE 600

Query: 595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           R RE+PG+IRT +INALRK G ADLA+KLMHSKIG+GY+RMGS+KRRVKF +L+E+
Sbjct: 601 RGREVPGRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLET 656

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449438480|ref|XP_004137016.1| PREDICTED: pentatricopeptide repeat-containing protein At1g03560, mitochondrial-like [Cucumis sativus]

 Score =  953 bits (2464), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 459/658 (69%), Positives = 541/658 (82%), Gaps = 15/658 (2%)

Query: 1   MRRVLRRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANS-------- 52
           MRR L RP S    Q+P +      K       P      +SFT    S N         
Sbjct: 1   MRRALLRP-SFVSAQNPNE------KSPTQTFLPLLFISSSSFTDYGFSQNFRFVFTNTL 53

Query: 53  FPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPN 112
            PPPEW+EPF DVSD++S  Q L+PSPWV QILNLLDGSS+ME NLDSFCRKF +KLSPN
Sbjct: 54  LPPPEWIEPFVDVSDVISSSQPLDPSPWVAQILNLLDGSSNMEHNLDSFCRKFFVKLSPN 113

Query: 113 FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNE 172
           FV+FVL++ ++ ++P V +R F WA +QKKY H +EC++SLI+ L    D+ ++RLVF E
Sbjct: 114 FVTFVLQSVELREKPEVAVRFFFWAGKQKKYVHKIECHVSLIELLTFSADLVKIRLVFFE 173

Query: 173 LKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF 232
           LK++G LMT SAANSLIKSFG LG+VEELLWVWR MKENGI+PSLYTYNFL+NGLVNSMF
Sbjct: 174 LKDRGLLMTESAANSLIKSFGNLGLVEELLWVWRRMKENGIDPSLYTYNFLVNGLVNSMF 233

Query: 233 IESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMT 292
           IES+E VF+VM+ GK+ PD VTYN MIKGYCK GK QKAMEKFR ME +NV+PDKITYMT
Sbjct: 234 IESAEKVFEVMDGGKIVPDTVTYNIMIKGYCKAGKLQKAMEKFRDMEMKNVKPDKITYMT 293

Query: 293 LIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG 352
           LIQACY E DFD+CLSLY EM+E+G+EIP H+Y+LVIGGLCK  KC+E +A+FE+M ++G
Sbjct: 294 LIQACYSERDFDTCLSLYLEMEERGLEIPPHSYSLVIGGLCKQRKCMEAYAVFETMNQKG 353

Query: 353 CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAM 412
           C+ NVAIYTALIDSY+K GSM EA+ +FERMK EG EPD VTY V+++GLCK+ RL++ M
Sbjct: 354 CRANVAIYTALIDSYSKNGSMEEAMRLFERMKNEGFEPDAVTYSVLVNGLCKSGRLDDGM 413

Query: 413 QYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL 472
           + F+FCR  GVA+NAMFY+SLIDGLGKAGR+++AE LFEEM EKGC RDSYCYN +IDAL
Sbjct: 414 ELFDFCRNKGVAINAMFYASLIDGLGKAGRIEDAENLFEEMSEKGCARDSYCYNAIIDAL 473

Query: 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA 532
           AK GK+D+ALALF RME+EGCDQTVYT+TILI+G+FKEH+NEEA+K WD MIDKGITPT 
Sbjct: 474 AKHGKIDQALALFGRMEEEGCDQTVYTFTILIDGLFKEHKNEEAIKFWDKMIDKGITPTV 533

Query: 533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI 592
           ASFRAL+IGLCL GKVARACKILD+LAP GIIPETAFEDMI  LCK  RIKEACKLADGI
Sbjct: 534 ASFRALAIGLCLCGKVARACKILDDLAPMGIIPETAFEDMINTLCKAQRIKEACKLADGI 593

Query: 593 VDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           VDR REIPG+IRT LINALRKAGN+DL IKLMHSKIG+GYDRMGSIKRRVKFR+L+E+
Sbjct: 594 VDRGREIPGRIRTVLINALRKAGNSDLVIKLMHSKIGIGYDRMGSIKRRVKFRTLLEN 651

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15218855|ref|NP_171855.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75180297|sp|Q9LR67.1|PPR9_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03560, mitochondrial; Flags: Precursor gi|9280662|gb|AAF86531.1|AC002560_24 F21B7.18 [Arabidopsis thaliana] gi|332189465|gb|AEE27586.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  950 bits (2455), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/656 (68%), Positives = 540/656 (82%), Gaps = 6/656 (0%)

Query: 1   MRRVLRRPFSATLLQSP--PKLKLPPYKPGNNVGSPRNMGPLASFTSNPR---SANSFPP 55
           MRR  R+PFS  LL  P         YK G+ +       PL+S  ++ R   +++S PP
Sbjct: 1   MRRFYRKPFSVPLLNRPHCSSQSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLPP 60

Query: 56  PEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVS 115
           PEW+EPFNDVSDLV   +NL PSPWV QILNLLDGS+ ME+NLD FCRKFLIKLSPNFVS
Sbjct: 61  PEWIEPFNDVSDLVKSNRNLLPSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVS 120

Query: 116 FVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKE 175
           FVL++ ++ ++P++    F W+ +QKKY+HNLECY+SL+D LAL  DVDR+R V +E+K+
Sbjct: 121 FVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKK 180

Query: 176 KGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIES 235
             F MTVSAAN+LIKSFG LGMVEELLWVWR MKENGIEP+LYTYNFLMNGLV++MF++S
Sbjct: 181 FEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDS 240

Query: 236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
           +E VF+VME+G++ PD+VTYNTMIKGYCK G+TQKAMEK R ME R  + DKITYMT+IQ
Sbjct: 241 AERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQ 300

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
           ACY + DF SC++LY EMDEKGI++P HA++LVIGGLCK GK  EG+ +FE+MIR+G +P
Sbjct: 301 ACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKP 360

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           NVAIYT LID YAK GS+ +AI +  RM  EG +PD VTY V+++GLCKN R+EEA+ YF
Sbjct: 361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 420

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
             CR +G+A+N+MFYSSLIDGLGKAGRVDEAE LFEEM EKGC RDSYCYN LIDA  K 
Sbjct: 421 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query: 476 GKLDEALALFKRM-EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS 534
            K+DEA+ALFKRM E+EGCDQTVYTYTIL++GMFKEHRNEEALKLWDMMIDKGITPTAA 
Sbjct: 481 RKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAAC 540

Query: 535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594
           FRALS GLCLSGKVARACKILDELAP G+I + A EDMI  LCK GRIKEACKLADGI +
Sbjct: 541 FRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITE 600

Query: 595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           R RE+PG+IRT +INALRK G ADLA+KLMHSKIG+GY+RMGS+KRRVKF +L+E+
Sbjct: 601 RGREVPGRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLET 656

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|110738150|dbj|BAF01006.1| hypothetical protein [Arabidopsis thaliana]

 Score =  938 bits (2425), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 442/630 (70%), Positives = 529/630 (83%), Gaps = 4/630 (0%)

Query: 25  YKPGNNVGSPRNMGPLASFTSNPR---SANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWV 81
           YK G+ +       PL+S  ++ R   +++S PPPEW+EPFNDVSDLV   +NL PSPWV
Sbjct: 9   YKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLPPPEWIEPFNDVSDLVKSNRNLLPSPWV 68

Query: 82  RQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQK 141
            QILNLLDGS+ ME+NLD FCRKFLIKLSPNFVSFVL++ ++ ++P++    F W+ +QK
Sbjct: 69  SQILNLLDGSASMESNLDGFCRKFLIKLSPNFVSFVLKSDEIREKPDIAWSFFCWSRKQK 128

Query: 142 KYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEEL 201
           KY+HNLECY+SL+D LAL  DVDR+R V +E+K+  F MTVSAAN+LIKSFG LGMVEEL
Sbjct: 129 KYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKKFEFPMTVSAANALIKSFGKLGMVEEL 188

Query: 202 LWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKG 261
           LWVWR MKENGIEP+LYTYNFLMNGLV++MF++S+E VF+VME+G++ PD+VTYNTMIKG
Sbjct: 189 LWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDSAERVFEVMESGRIKPDIVTYNTMIKG 248

Query: 262 YCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIP 321
           YCK G+TQKAMEK R ME R  + DKITYMT+IQACY + DF SC++LY EMDEKGI++P
Sbjct: 249 YCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQACYADSDFGSCVALYQEMDEKGIQVP 308

Query: 322 SHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFE 381
            HA++LVIGGLCK GK  EG+ +FE+MIR+G +PNVAIYT LID YAK GS+ +AI +  
Sbjct: 309 PHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKPNVAIYTVLIDGYAKSGSVEDAIRLLH 368

Query: 382 RMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG 441
           RM  EG +PD VTY V+++GLCKN R+EEA+ YF  CR +G+A+N+MFYSSLIDGLGKAG
Sbjct: 369 RMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYFHTCRFDGLAINSMFYSSLIDGLGKAG 428

Query: 442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM-EDEGCDQTVYTY 500
           RVDEAE LFEEM EKGC RDSYCYN LIDA  K  K+DEA+ALFKRM E+EGCDQTVYTY
Sbjct: 429 RVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKHRKVDEAIALFKRMEEEEGCDQTVYTY 488

Query: 501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP 560
           TIL++GMFKEHRNEEALKLWDMMIDKGITPTAA FRALS GLCLSGKVARACKILDELAP
Sbjct: 489 TILLSGMFKEHRNEEALKLWDMMIDKGITPTAACFRALSTGLCLSGKVARACKILDELAP 548

Query: 561 KGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLA 620
            G+I + A EDMI  LCK GRIKEACKLADGI +R RE+PG+IRT +INALRK G ADLA
Sbjct: 549 MGVILDAACEDMINTLCKAGRIKEACKLADGITERGREVPGRIRTVMINALRKVGKADLA 608

Query: 621 IKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
           +KLMHSKIG+GY+RMGS+KRRVKF +L+E+
Sbjct: 609 MKLMHSKIGIGYERMGSVKRRVKFTTLLET 638

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|293336971|ref|NP_001167873.1| uncharacterized protein LOC100381578 [Zea mays] gi|223944573|gb|ACN26370.1| unknown [Zea mays] gi|414585240|tpg|DAA35811.1| TPA: hypothetical protein ZEAMMB73_503732 [Zea mays]

 Score =  668 bits (1723), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 342/646 (52%), Positives = 441/646 (68%), Gaps = 43/646 (6%)

Query: 34  PRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSP-------------W 80
           PR   P A+    P    + PPPEW+EP+ D++D         PSP             W
Sbjct: 8   PRGRRPAAA----PNDHQTLPPPEWIEPYPDLAD---------PSPYASASAATPAPSPW 54

Query: 81  VRQILNLLDGS--SDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLF---- 134
           + ++++L+  S  + + A+L +FCR FL++LSP FV+  LR+  ++  P   L  F    
Sbjct: 55  LPRVISLVLRSPPAALAADLRAFCRTFLLRLSPAFVAAALRSPQLAPHPLPSLHFFRSLP 114

Query: 135 TWAARQKKYSHNLECYISLIDCLALCGDVD---RVRLVFNELKEKG----FLMTVSAANS 187
                +    H L CY+SL+   A   + D   + R +  EL+  G      +T +++ S
Sbjct: 115 NATDLRAHPQHLLSCYVSLLHSFARSRETDAAGQARQLVAELRAHGDAVLSHLTPASSAS 174

Query: 188 LIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMEN-G 246
           LI+S    G+ EELLW W++M+  G+EPS  TYN L++GLVN+  ++++  VF  M    
Sbjct: 175 LIRSLAAFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNADLLDTAINVFDAMSTEH 234

Query: 247 KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAM-EARNVQPDKITYMTLIQACYLEGDFDS 305
           +V PDVV+YN +IKGYC+ G+TQ AM +   M E   + PDK+TY+TL+Q  Y E  F  
Sbjct: 235 RVRPDVVSYNILIKGYCRAGRTQDAMARLADMREHAELAPDKVTYLTLMQRHYSEATFPQ 294

Query: 306 CLSLYHEMDEKGI--EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTAL 363
           C++L+ EM+E+G+  EIP HAY LVIG L K GK  E  A+FE M +RGC  N A+YTAL
Sbjct: 295 CIALFQEMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMSKRGCPANAAMYTAL 354

Query: 364 IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV 423
           IDS  K G   EA+ +FERMK  G+E D VTYGV+++ LC+   LEEA+  F  C   GV
Sbjct: 355 IDSMGKFGREKEAMALFERMKATGIELDAVTYGVVVNCLCRFGNLEEALACFRSCVEKGV 414

Query: 424 AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALA 483
           AVNA+FY+SLIDG GK G VD+A+ELFEEMV KG   DSYCYNVLIDAL K G+ D+A A
Sbjct: 415 AVNAIFYTSLIDGFGKTGMVDQAKELFEEMVAKGFVPDSYCYNVLIDALVKAGRTDDACA 474

Query: 484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC 543
            +KRMED+GCDQTVYTYTILI+G+FKEH+NEEALK WD MIDKGITPTAA+FRALS GLC
Sbjct: 475 FYKRMEDDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRALSNGLC 534

Query: 544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKI 603
           LSGK +RA +ILDELAP G+IPETA EDMI  LCKTGR K+ACKLADGIV + REIPG++
Sbjct: 535 LSGKFSRAWRILDELAPMGVIPETAHEDMINVLCKTGRFKQACKLADGIVQKGREIPGRV 594

Query: 604 RTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVE 649
           RT +INALRKAGN DLA KL+HSKIG+GY+R GS+KRRVKF++L E
Sbjct: 595 RTMMINALRKAGNTDLAFKLVHSKIGIGYERSGSVKRRVKFQTLFE 640

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242074484|ref|XP_002447178.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor] gi|241938361|gb|EES11506.1| hypothetical protein SORBIDRAFT_06g029920 [Sorghum bicolor]

 Score =  666 bits (1719), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 339/640 (52%), Positives = 440/640 (68%), Gaps = 28/640 (4%)

Query: 34  PRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSD----LVSCPQNLNPSPWVRQILNLLD 89
           PR   P    ++ P      PPPEW++P+ D++D             PSPW+ ++++L+ 
Sbjct: 8   PRGRRP----SATPHDHQPLPPPEWIDPYPDLADPSPYASGSAAPPTPSPWLPRVISLVL 63

Query: 90  GS--SDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLF----TWAARQKKY 143
            S  + + A+L +FCR FL++LSP FV+  LR+  ++  P   L  F      A      
Sbjct: 64  RSPPATLAADLRAFCRTFLLRLSPAFVAAALRSPLLTPHPLPSLHFFRSLPNGADLLAHP 123

Query: 144 SHNLECYISLIDCLALCGDV------DRVRLVFNELKEKG--FLMTVSAANS--LIKSFG 193
            H+L CY+SL+   A   +        + R +  EL+  G   L  +S A+S  LI+S  
Sbjct: 124 QHHLSCYVSLLHSFARSRETIGPDAAGQARQLVAELRAHGDAVLRHLSPASSASLIRSLA 183

Query: 194 GLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMEN-GKVGPDV 252
             G+ EELLW W++M+  G+EPS  TYN L++GLVN+  ++++  VF  M    +V PDV
Sbjct: 184 AFGLSEELLWAWQAMRLAGVEPSRLTYNCLLDGLVNAGLLDTAINVFDAMSTEDRVRPDV 243

Query: 253 VTYNTMIKGYCKVGKTQKAMEKFRAM-EARNVQPDKITYMTLIQACYLEGDFDSCLSLYH 311
           V+YN +IKGYC+ G+TQ  M +   + E   + PDK+TY+TL+Q  Y EG F  C++L+ 
Sbjct: 244 VSYNILIKGYCRAGRTQDGMSRLADLREQAELAPDKVTYLTLMQRHYSEGTFPQCIALFQ 303

Query: 312 EMDEKGI--EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369
           EM+E+G+  EIP HAY LVIG L K GK  E  A+FE M++RGC  N A+YTALIDS  K
Sbjct: 304 EMEERGMGKEIPQHAYVLVIGALSKDGKPFEALAVFERMLKRGCPANAAMYTALIDSMGK 363

Query: 370 LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMF 429
           LG   EA+ +FERMK  G+E D VTYGVI++ LC+   +EEA+  F  C   GVAVNA+F
Sbjct: 364 LGREKEAMALFERMKASGIELDAVTYGVIVNCLCRFGNMEEALSCFRSCVEKGVAVNAIF 423

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME 489
           Y+SLIDG GK G VD+A+ELFEEM+ KG   DSYCYNVLIDAL K G+ D A A ++RME
Sbjct: 424 YTSLIDGFGKTGMVDQAKELFEEMIAKGFVPDSYCYNVLIDALVKAGRTDIACAFYERME 483

Query: 490 DEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA 549
           D+GCDQTVYTYTILI+G+FKEH+NEEALK WD MIDKGITPTAA+FR L+ GLCLSGK +
Sbjct: 484 DDGCDQTVYTYTILIDGLFKEHKNEEALKFWDSMIDKGITPTAAAFRVLANGLCLSGKFS 543

Query: 550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN 609
           RA +ILDELAP G+IPETA EDMI  LCKTGR K+ACKLADGIV + RE+PG++RT +IN
Sbjct: 544 RAWRILDELAPMGVIPETAHEDMINVLCKTGRFKQACKLADGIVQKGREVPGRVRTMMIN 603

Query: 610 ALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVE 649
           ALRKAGN DLA KL+HSKIG+GY+R GSIKRRVKF+SL E
Sbjct: 604 ALRKAGNTDLAFKLVHSKIGIGYERSGSIKRRVKFQSLFE 643

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	650
TAIR|locus:2020808	660	AT1G03560 [Arabidopsis thalian	1.0	0.984	0.681	9.6e-247
TAIR|locus:2034760	637	AT1G12300 [Arabidopsis thalian	0.836	0.854	0.298	5.5e-61
TAIR|locus:2077637	871	AT3G06920 "AT3G06920" [Arabido	0.729	0.544	0.292	2.2e-60
TAIR|locus:2164910	747	EMB2745 "EMBRYO DEFECTIVE 2745	0.752	0.654	0.290	1.2e-58
TAIR|locus:2015208	630	AT1G63130 [Arabidopsis thalian	0.746	0.769	0.305	6.6e-58
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.738	0.781	0.297	6.6e-58
TAIR|locus:2119747	660	EMB1025 "embryo defective 1025	0.806	0.793	0.285	2.2e-57
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.753	0.760	0.292	3.6e-57
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.683	0.608	0.302	3.3e-56
TAIR|locus:2150024	729	AT5G01110 [Arabidopsis thalian	0.695	0.620	0.298	3.3e-56

TAIR|locus:2020808 AT1G03560 [Arabidopsis thaliana (taxid:3702)]

 Score = 2377 (841.8 bits), Expect = 9.6e-247, P = 9.6e-247
 Identities = 447/656 (68%), Positives = 535/656 (81%)

Query:     1 MRRVLRRPFSATXXXXXXXXXXXX--XXXGNNVGSPRNMGPLASFTSNPR---SANSFPP 55
             MRR  R+PFS                   G+ +       PL+S  ++ R   +++S PP
Sbjct:     1 MRRFYRKPFSVPLLNRPHCSSQSHCLYKNGDFLSDDSKCSPLSSSRTSVRWVFNSSSLPP 60

Query:    56 PEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVS 115
             PEW+EPFNDVSDLV   +NL PSPWV QILNLLDGS+ ME+NLD FCRKFLIKLSPNFVS
Sbjct:    61 PEWIEPFNDVSDLVKSNRNLLPSPWVSQILNLLDGSASMESNLDGFCRKFLIKLSPNFVS 120

Query:   116 FVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKE 175
             FVL++ ++ ++P++    F W+ +QKKY+HNLECY+SL+D LAL  DVDR+R V +E+K+
Sbjct:   121 FVLKSDEIREKPDIAWSFFCWSRKQKKYTHNLECYVSLVDVLALAKDVDRIRFVSSEIKK 180

Query:   176 KGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIES 235
               F MTVSAAN+LIKSFG LGMVEELLWVWR MKENGIEP+LYTYNFLMNGLV++MF++S
Sbjct:   181 FEFPMTVSAANALIKSFGKLGMVEELLWVWRKMKENGIEPTLYTYNFLMNGLVSAMFVDS 240

Query:   236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
             +E VF+VME+G++ PD+VTYNTMIKGYCK G+TQKAMEK R ME R  + DKITYMT+IQ
Sbjct:   241 AERVFEVMESGRIKPDIVTYNTMIKGYCKAGQTQKAMEKLRDMETRGHEADKITYMTMIQ 300

Query:   296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
             ACY + DF SC++LY EMDEKGI++P HA++LVIGGLCK GK  EG+ +FE+MIR+G +P
Sbjct:   301 ACYADSDFGSCVALYQEMDEKGIQVPPHAFSLVIGGLCKEGKLNEGYTVFENMIRKGSKP 360

Query:   356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
             NVAIYT LID YAK GS+ +AI +  RM  EG +PD VTY V+++GLCKN R+EEA+ YF
Sbjct:   361 NVAIYTVLIDGYAKSGSVEDAIRLLHRMIDEGFKPDVVTYSVVVNGLCKNGRVEEALDYF 420

Query:   416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
               CR +G+A+N+MFYSSLIDGLGKAGRVDEAE LFEEM EKGC RDSYCYN LIDA  K 
Sbjct:   421 HTCRFDGLAINSMFYSSLIDGLGKAGRVDEAERLFEEMSEKGCTRDSYCYNALIDAFTKH 480

Query:   476 GKLDEALALFKRMEDE-GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS 534
              K+DEA+ALFKRME+E GCDQTVYTYTIL++GMFKEHRNEEALKLWDMMIDKGITPTAA 
Sbjct:   481 RKVDEAIALFKRMEEEEGCDQTVYTYTILLSGMFKEHRNEEALKLWDMMIDKGITPTAAC 540

Query:   535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD 594
             FRALS GLCLSGKVARACKILDELAP G+I + A EDMI  LCK GRIKEACKLADGI +
Sbjct:   541 FRALSTGLCLSGKVARACKILDELAPMGVILDAACEDMINTLCKAGRIKEACKLADGITE 600

Query:   595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKFRSLVES 650
             R RE+PG+IRT +INALRK G ADLA+KLMHSKIG+GY+RMGS+KRRVKF +L+E+
Sbjct:   601 RGREVPGRIRTVMINALRKVGKADLAMKLMHSKIGIGYERMGSVKRRVKFTTLLET 656

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2034760 AT1G12300 [Arabidopsis thaliana (taxid:3702)]

 Score = 624 (224.7 bits), Expect = 5.5e-61, P = 5.5e-61
 Identities = 165/552 (29%), Positives = 266/552 (48%)

Query:    87 LLDGSSDMEAN--LDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKK-Y 143
             L  G  D++A+  +D F      +  P  + F      ++K     L L      + K  
Sbjct:    60 LRSGLVDIKADDAIDLFRDMIHSRPLPTVIDFSRLFSAIAKTKQYDLVLALCKQMELKGI 119

Query:   144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203
             +HNL     +I+C   C  +        ++ + G+       ++LI      G V E L 
Sbjct:   120 AHNLYTLSIMINCFCRCRKLCLAFSAMGKIIKLGYEPNTITFSTLINGLCLEGRVSEALE 179

Query:   204 VWRSMKENGIEPSLYTYNFLMNGL-VNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY 262
             +   M E G +P L T N L+NGL ++    E+  L+ K++E G   P+ VTY  ++   
Sbjct:   180 LVDRMVEMGHKPDLITINTLVNGLCLSGKEAEAMLLIDKMVEYG-CQPNAVTYGPVLNVM 238

Query:   263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS 322
             CK G+T  AME  R ME RN++ D + Y  +I      G  D+  +L++EM+ KGI    
Sbjct:   239 CKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKHGSLDNAFNLFNEMEMKGITTNI 298

Query:   323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382
               YN++IGG C  G+  +G  +   MI+R   PNV  ++ LIDS+ K G + EA  + + 
Sbjct:   299 ITYNILIGGFCNAGRWDDGAKLLRDMIKRKINPNVVTFSVLIDSFVKEGKLREAEELHKE 358

Query:   383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442
             M + G+ PD +TY  +I G CK   L++A Q  +   + G   N   ++ LI+G  KA R
Sbjct:   359 MIHRGIAPDTITYTSLIDGFCKENHLDKANQMVDLMVSKGCDPNIRTFNILINGYCKANR 418

Query:   443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502
             +D+  ELF +M  +G   D+  YN LI    + GKL+ A  LF+ M        + TY I
Sbjct:   419 IDDGLELFRKMSLRGVVADTVTYNTLIQGFCELGKLNVAKELFQEMVSRKVPPNIVTYKI 478

Query:   503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562
             L++G+     +E+AL++++ +    +      +  +  G+C + KV  A  +   L  KG
Sbjct:   479 LLDGLCDNGESEKALEIFEKIEKSKMELDIGIYNIIIHGMCNASKVDDAWDLFCSLPLKG 538

Query:   563 IIPET-AFEDMITCLCKTGRIKEACKLADGIVDREREIP-GKIRTALINALRKAGNADLA 620
             + P    +  MI  LCK G + EA +L    ++ +   P G     LI A    G+A  +
Sbjct:   539 VKPGVKTYNIMIGGLCKKGPLSEA-ELLFRKMEEDGHAPDGWTYNILIRAHLGDGDATKS 597

Query:   621 IKLMHSKIGVGY 632
             +KL+      G+
Sbjct:   598 VKLIEELKRCGF 609

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2077637 AT3G06920 "AT3G06920" [Arabidopsis thaliana (taxid:3702)]

 Score = 598 (215.6 bits), Expect = 2.2e-60, Sum P(2) = 2.2e-60
 Identities = 139/475 (29%), Positives = 238/475 (50%)

Query:   140 QKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVE 199
             +K  + NL  Y  LID L   G +D    + + +++ G    V   N ++        ++
Sbjct:   370 KKDAAPNLSTYNILIDMLCRAGKLDTAFELRDSMQKAGLFPNVRTVNIMVDRLCKSQKLD 429

Query:   200 ELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMI 259
             E   ++  M      P   T+  L++GL     ++ +  V++ M +     + + Y ++I
Sbjct:   430 EACAMFEEMDYKVCTPDEITFCSLIDGLGKVGRVDDAYKVYEKMLDSDCRTNSIVYTSLI 489

Query:   260 KGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE 319
             K +   G+ +   + ++ M  +N  PD     T +   +  G+ +   +++ E+  +   
Sbjct:   490 KNFFNHGRKEDGHKIYKDMINQNCSPDLQLLNTYMDCMFKAGEPEKGRAMFEEIKARRFV 549

Query:   320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINI 379
               + +Y+++I GL K G   E + +F SM  +GC  +   Y  +ID + K G +N+A  +
Sbjct:   550 PDARSYSILIHGLIKAGFANETYELFYSMKEQGCVLDTRAYNIVIDGFCKCGKVNKAYQL 609

Query:   380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK 439
              E MK +G EP  VTYG +I GL K +RL+EA   FE  ++  + +N + YSSLIDG GK
Sbjct:   610 LEEMKTKGFEPTVVTYGSVIDGLAKIDRLDEAYMLFEEAKSKRIELNVVIYSSLIDGFGK 669

Query:   440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT 499
              GR+DEA  + EE+++KG   + Y +N L+DAL K  +++EAL  F+ M++  C     T
Sbjct:   670 VGRIDEAYLILEELMQKGLTPNLYTWNSLLDALVKAEEINEALVCFQSMKELKCTPNQVT 729

Query:   500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA 559
             Y ILING+ K  +  +A   W  M  +G+ P+  S+  +  GL  +G +A A  + D   
Sbjct:   730 YGILINGLCKVRKFNKAFVFWQEMQKQGMKPSTISYTTMISGLAKAGNIAEAGALFDRFK 789

Query:   560 PKGIIPETA-FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK 613
               G +P++A +  MI  L    R  +A  L +    R   I  K    L++ L K
Sbjct:   790 ANGGVPDSACYNAMIEGLSNGNRAMDAFSLFEETRRRGLPIHNKTCVVLLDTLHK 844

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2164910 EMB2745 "EMBRYO DEFECTIVE 2745" [Arabidopsis thaliana (taxid:3702)]

 Score = 602 (217.0 bits), Expect = 1.2e-58, P = 1.2e-58
 Identities = 146/502 (29%), Positives = 257/502 (51%)

Query:   155 DCLALCGDVDRVRLVFNELKEKGFLM--TVSAANSLIKSFGGLGMVEELLWVWRSMKENG 212
             D  A   D +   LVF  L+E   L   T S  + ++KS+  L ++++ L +    + +G
Sbjct:   105 DVAAKTLDDEYASLVFKSLQETYDLCYSTSSVFDLVVKSYSRLSLIDKALSIVHLAQAHG 164

Query:   213 IEPSLYTYNFLMNGLVNSMF-IESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKA 271
               P + +YN +++  + S   I  +E VFK M   +V P+V TYN +I+G+C  G    A
Sbjct:   165 FMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQVSPNVFTYNILIRGFCFAGNIDVA 224

Query:   272 MEKFRAMEARNVQPDKITYMTLIQA-CYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIG 330
             +  F  ME +   P+ +TY TLI   C L    D    L   M  KG+E    +YN+VI 
Sbjct:   225 LTLFDKMETKGCLPNVVTYNTLIDGYCKLR-KIDDGFKLLRSMALKGLEPNLISYNVVIN 283

Query:   331 GLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEP 390
             GLC+ G+  E   +   M RRG   +   Y  LI  Y K G+ ++A+ +   M   G+ P
Sbjct:   284 GLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEMLRHGLTP 343

Query:   391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELF 450
               +TY  +I  +CK   +  AM++ +  R  G+  N   Y++L+DG  + G ++EA  + 
Sbjct:   344 SVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMNEAYRVL 403

Query:   451 EEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE 510
              EM + G       YN LI+     GK+++A+A+ + M+++G    V +Y+ +++G  + 
Sbjct:   404 REMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVLSGFCRS 463

Query:   511 HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-ETAF 569
             +  +EAL++   M++KGI P   ++ +L  G C   +   AC + +E+   G+ P E  +
Sbjct:   464 YDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLPPDEFTY 523

Query:   570 EDMITCLCKTGRIKEACKLADGIVDREREIPGKIR-TALINALRKAGNADLAIKLMHSKI 628
               +I   C  G +++A +L + +V++   +P  +  + LIN L K      A +L+   +
Sbjct:   524 TALINAYCMEGDLEKALQLHNEMVEKG-VLPDVVTYSVLINGLNKQSRTREAKRLL---L 579

Query:   629 GVGYDRMGSIKRRVKFRSLVES 650
              + Y+   S+   V + +L+E+
Sbjct:   580 KLFYEE--SVPSDVTYHTLIEN 599

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0009793 "embryo development ending in seed dormancy" evidence=NAS

TAIR|locus:2015208 AT1G63130 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 151/495 (30%), Positives = 250/495 (50%)

Query:   144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203
             SHNL  Y  LI+C      +     V  ++ + G+   +   NSL+  F     + + + 
Sbjct:   113 SHNLYTYSILINCFCRRSQLSLALAVLAKMMKLGYEPDIVTLNSLLNGFCHGNRISDAVS 172

Query:   204 VWRSMKENGIEPSLYTYNFLMNGLV-NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY 262
             +   M E G +P  +T+N L++GL  ++   E+  LV +++  G   PD+VTY  ++ G 
Sbjct:   173 LVGQMVEMGYQPDSFTFNTLIHGLFRHNRASEAVALVDRMVVKG-CQPDLVTYGIVVNGL 231

Query:   263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS 322
             CK G    A+   + ME   ++P  + Y T+I A     + +  L+L+ EMD KGI    
Sbjct:   232 CKRGDIDLALSLLKKMEQGKIEPGVVIYNTIIDALCNYKNVNDALNLFTEMDNKGIRPNV 291

Query:   323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382
               YN +I  LC  G+  +   +   MI R   PNV  ++ALID++ K G + EA  +++ 
Sbjct:   292 VTYNSLIRCLCNYGRWSDASRLLSDMIERKINPNVVTFSALIDAFVKEGKLVEAEKLYDE 351

Query:   383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442
             M    ++PD  TY  +I+G C ++RL+EA   FE   +     N + Y++LI G  KA R
Sbjct:   352 MIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFPNVVTYNTLIKGFCKAKR 411

Query:   443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502
             VDE  ELF EM ++G   ++  Y  LI    +  + D A  +FK+M  +G    + TY+I
Sbjct:   412 VDEGMELFREMSQRGLVGNTVTYTTLIHGFFQARECDNAQIVFKQMVSDGVLPDIMTYSI 471

Query:   503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562
             L++G+    + E AL +++ +    + P   ++  +  G+C +GKV     +   L+ KG
Sbjct:   472 LLDGLCNNGKVETALVVFEYLQRSKMEPDIYTYNIMIEGMCKAGKVEDGWDLFCSLSLKG 531

Query:   563 IIPETA-FEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTALINALR---KAGN 616
             + P    +  M++  C+ G  +EA  L   + + E  +P  G   T +   LR   KA +
Sbjct:   532 VKPNVVTYTTMMSGFCRKGLKEEADALFREMKE-EGPLPDSGTYNTLIRAHLRDGDKAAS 590

Query:   617 ADLAIKLMHSKIGVG 631
             A+L I+ M S   VG
Sbjct:   591 AEL-IREMRSCRFVG 604

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 595 (214.5 bits), Expect = 6.6e-58, P = 6.6e-58
 Identities = 146/490 (29%), Positives = 249/490 (50%)

Query:   144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW 203
             SHNL  Y  +I+CL     +     +  ++ + G+  ++   NSL+  F     + E + 
Sbjct:    97 SHNLYTYNIMINCLCRRSQLSFALAILGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVA 156

Query:   204 VWRSMKENGIEPSLYTYNFLMNGLV-NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY 262
             +   M E G +P   T+  L++GL  ++   E+  LV +++  G   PD+VTY  +I G 
Sbjct:   157 LVDQMVEMGYQPDTVTFTTLVHGLFQHNKASEAVALVERMVVKG-CQPDLVTYGAVINGL 215

Query:   263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS 322
             CK G+   A+     ME   ++ D + Y T+I +       D  L+L+ EMD KGI    
Sbjct:   216 CKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDV 275

Query:   323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382
               Y+ +I  LC  G+  +   +   M+ R   PNV  + +LID++AK G + EA  +F+ 
Sbjct:   276 FTYSSLISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDE 335

Query:   383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR 442
             M    ++P+ VTY  +I+G C ++RL+EA Q F    +     + + Y++LI+G  KA +
Sbjct:   336 MIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKK 395

Query:   443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI 502
             V +  ELF +M  +G   ++  Y  LI    +    D A  +FK+M  +G    + TY  
Sbjct:   396 VVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVFKQMVSDGVHPNIMTYNT 455

Query:   503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG 562
             L++G+ K  + E+A+ +++ +    + P   ++  +S G+C +GKV     +   L+ KG
Sbjct:   456 LLDGLCKNGKLEKAMVVFEYLQKSKMEPDIYTYNIMSEGMCKAGKVEDGWDLFCSLSLKG 515

Query:   563 IIPET-AFEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTALINALR---KAGN 616
             + P+  A+  MI+  CK G  +EA  L   + + +  +P  G   T +   LR   KA +
Sbjct:   516 VKPDVIAYNTMISGFCKKGLKEEAYTLFIKMKE-DGPLPDSGTYNTLIRAHLRDGDKAAS 574

Query:   617 ADLAIKLMHS 626
             A+L IK M S
Sbjct:   575 AEL-IKEMRS 583

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2119747 EMB1025 "embryo defective 1025" [Arabidopsis thaliana (taxid:3702)]

 Score = 590 (212.7 bits), Expect = 2.2e-57, P = 2.2e-57
 Identities = 153/536 (28%), Positives = 264/536 (49%)

Query:   107 IKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRV 166
             + +SPN    V+ N    + P +  ++F  A +   +        S+I+  A  GD D V
Sbjct:    40 VSVSPNPSMEVVENP--LEAP-ISEKMFKSAPKMGSFKLGDSTLSSMIESYANSGDFDSV 96

Query:   167 RLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVW-RSMKENGIEPSLYTYNFLMN 225
               + + ++ +  ++   +   + +++G   + ++ + ++ R + E   + S+ ++N ++N
Sbjct:    97 EKLLSRIRLENRVIIERSFIVVFRAYGKAHLPDKAVDLFHRMVDEFRCKRSVKSFNSVLN 156

Query:   226 GLVNS-MF---IESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEAR 281
              ++N  ++   +E  + V     N  + P+ +++N +IK  CK+    +A+E FR M  R
Sbjct:   157 VIINEGLYHRGLEFYDYVVNSNMNMNISPNGLSFNLVIKALCKLRFVDRAIEVFRGMPER 216

Query:   282 NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEG 341
                PD  TY TL+     E   D  + L  EM  +G       YN++I GLCK G     
Sbjct:   217 KCLPDGYTYCTLMDGLCKEERIDEAVLLLDEMQSEGCSPSPVIYNVLIDGLCKKGDLTRV 276

Query:   342 HAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISG 401
               + ++M  +GC PN   Y  LI      G +++A+++ ERM      P++VTYG +I+G
Sbjct:   277 TKLVDNMFLKGCVPNEVTYNTLIHGLCLKGKLDKAVSLLERMVSSKCIPNDVTYGTLING 336

Query:   402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD 461
             L K  R  +A++        G  +N   YS LI GL K G+ +EA  L+ +M EKGC  +
Sbjct:   337 LVKQRRATDAVRLLSSMEERGYHLNQHIYSVLISGLFKEGKAEEAMSLWRKMAEKGCKPN 396

Query:   462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD 521
                Y+VL+D L + GK +EA  +  RM   GC    YTY+ L+ G FK    EEA+++W 
Sbjct:   397 IVVYSVLVDGLCREGKPNEAKEILNRMIASGCLPNAYTYSSLMKGFFKTGLCEEAVQVWK 456

Query:   522 MMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET-AFEDMITCLCKTG 580
              M   G +     +  L  GLC  G+V  A  +  ++   GI P+T A+  +I  LC  G
Sbjct:   457 EMDKTGCSRNKFCYSVLIDGLCGVGRVKEAMMVWSKMLTIGIKPDTVAYSSIIKGLCGIG 516

Query:   581 RIKEACKLADGIVDRE--REIPGKIR-TALINALRKAGNADLAIKLMHSKIGVGYD 633
              +  A KL   ++ +E  +  P  +    L++ L    +   A+ L++S +  G D
Sbjct:   517 SMDAALKLYHEMLCQEEPKSQPDVVTYNILLDGLCMQKDISRAVDLLNSMLDRGCD 572

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=IMP;NAS

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 588 (212.0 bits), Expect = 3.6e-57, P = 3.6e-57
 Identities = 145/495 (29%), Positives = 245/495 (49%)

Query:   141 KKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEE 200
             K  +H++     +I+C   C  +        ++ + G+       N+L+        V E
Sbjct:   117 KGIAHSIYTLSIMINCFCRCRKLSYAFSTMGKIMKLGYEPDTVIFNTLLNGLCLECRVSE 176

Query:   201 LLWVWRSMKENGIEPSLYTYNFLMNGL-VNSMFIESSELVFKVMENGKVGPDVVTYNTMI 259
              L +   M E G +P+L T N L+NGL +N    ++  L+ +++E G   P+ VTY  ++
Sbjct:   177 ALELVDRMVEMGHKPTLITLNTLVNGLCLNGKVSDAVVLIDRMVETG-FQPNEVTYGPVL 235

Query:   260 KGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE 319
                CK G+T  AME  R ME RN++ D + Y  +I     +G  D+  +L++EM+ KG +
Sbjct:   236 NVMCKSGQTALAMELLRKMEERNIKLDAVKYSIIIDGLCKDGSLDNAFNLFNEMEIKGFK 295

Query:   320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINI 379
                  YN +IGG C  G+  +G  +   MI+R   PNV  ++ LIDS+ K G + EA  +
Sbjct:   296 ADIITYNTLIGGFCNAGRWDDGAKLLRDMIKRKISPNVVTFSVLIDSFVKEGKLREADQL 355

Query:   380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK 439
              + M   G+ P+ +TY  +I G CK  RLEEA+Q  +   + G   + M ++ LI+G  K
Sbjct:   356 LKEMMQRGIAPNTITYNSLIDGFCKENRLEEAIQMVDLMISKGCDPDIMTFNILINGYCK 415

Query:   440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT 499
             A R+D+  ELF EM  +G   ++  YN L+    + GKL+ A  LF+ M        + +
Sbjct:   416 ANRIDDGLELFREMSLRGVIANTVTYNTLVQGFCQSGKLEVAKKLFQEMVSRRVRPDIVS 475

Query:   500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA 559
             Y IL++G+      E+AL+++  +    +      +  +  G+C + KV  A  +   L 
Sbjct:   476 YKILLDGLCDNGELEKALEIFGKIEKSKMELDIGIYMIIIHGMCNASKVDDAWDLFCSLP 535

Query:   560 PKGI-IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR-TALINALRKAGNA 617
              KG+ +   A+  MI+ LC+   + +A  L   + + E   P ++    LI A     +A
Sbjct:   536 LKGVKLDARAYNIMISELCRKDSLSKADILFRKMTE-EGHAPDELTYNILIRAHLGDDDA 594

Query:   618 DLAIKLMHSKIGVGY 632
               A +L+      G+
Sbjct:   595 TTAAELIEEMKSSGF 609

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 137/453 (30%), Positives = 231/453 (50%)

Query:   146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVW 205
             N   Y +LI  L+ C  V+    +  E+   G +      N +I        + E   + 
Sbjct:   251 NSVIYQTLIHSLSKCNRVNEALQLLEEMFLMGCVPDAETFNDVILGLCKFDRINEAAKMV 310

Query:   206 RSMKENGIEPSLYTYNFLMNGLVNSMFIESS-ELVFKVMENGKVGPDVVTYNTMIKGYCK 264
               M   G  P   TY +LMNGL     ++++ +L +++ +     P++V +NT+I G+  
Sbjct:   311 NRMLIRGFAPDDITYGYLMNGLCKIGRVDAAKDLFYRIPK-----PEIVIFNTLIHGFVT 365

Query:   265 VGKTQKAMEKFRAM-EARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH 323
              G+   A      M  +  + PD  TY +LI   + EG     L + H+M  KG +   +
Sbjct:   366 HGRLDDAKAVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVY 425

Query:   324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERM 383
             +Y +++ G CK+GK  E + +   M   G +PN   +  LI ++ K   + EA+ IF  M
Sbjct:   426 SYTILVDGFCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREM 485

Query:   384 KYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV 443
               +G +PD  T+  +ISGLC+ + ++ A+       + GV  N + Y++LI+   + G +
Sbjct:   486 PRKGCKPDVYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEI 545

Query:   444 DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTIL 503
              EA +L  EMV +G P D   YN LI  L + G++D+A +LF++M  +G   +  +  IL
Sbjct:   546 KEARKLVNEMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNIL 605

Query:   504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563
             ING+ +    EEA++    M+ +G TP   +F +L  GLC +G++     +  +L  +GI
Sbjct:   606 INGLCRSGMVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRIEDGLTMFRKLQAEGI 665

Query:   564 IPETA-FEDMITCLCKTGRIKEACKLAD-GIVD 594
              P+T  F  +++ LCK G + +AC L D GI D
Sbjct:   666 PPDTVTFNTLMSWLCKGGFVYDACLLLDEGIED 698

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2150024 AT5G01110 [Arabidopsis thaliana (taxid:3702)]

 Score = 579 (208.9 bits), Expect = 3.3e-56, P = 3.3e-56
 Identities = 137/459 (29%), Positives = 228/459 (49%)

Query:   170 FNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW-VWRSMKENGIEPSLYTYNFLMNGLV 228
             F  L+ KGF +++ A N+LI S   +G VE L W V++ +  +G+  ++YT N ++N L 
Sbjct:   188 FTLLRSKGFTVSIDACNALIGSLVRIGWVE-LAWGVYQEISRSGVGINVYTLNIMVNALC 246

Query:   229 NSMFIES-SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDK 287
                 +E     + +V E G V PD+VTYNT+I  Y   G  ++A E   AM  +   P  
Sbjct:   247 KDGKMEKVGTFLSQVQEKG-VYPDIVTYNTLISAYSSKGLMEEAFELMNAMPGKGFSPGV 305

Query:   288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFES 347
              TY T+I      G ++    ++ EM   G+   S  Y  ++   CK G  +E   +F  
Sbjct:   306 YTYNTVINGLCKHGKYERAKEVFAEMLRSGLSPDSTTYRSLLMEACKKGDVVETEKVFSD 365

Query:   348 MIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNER 407
             M  R   P++  +++++  + + G++++A+  F  +K  G+ PD V Y ++I G C+   
Sbjct:   366 MRSRDVVPDLVCFSSMMSLFTRSGNLDKALMYFNSVKEAGLIPDNVIYTILIQGYCRKGM 425

Query:   408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV 467
             +  AM         G A++ + Y++++ GL K   + EA++LF EM E+    DSY   +
Sbjct:   426 ISVAMNLRNEMLQQGCAMDVVTYNTILHGLCKRKMLGEADKLFNEMTERALFPDSYTLTI 485

Query:   468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG 527
             LID   K G L  A+ LF++M+++     V TY  L++G  K    + A ++W  M+ K 
Sbjct:   486 LIDGHCKLGNLQNAMELFQKMKEKRIRLDVVTYNTLLDGFGKVGDIDTAKEIWADMVSKE 545

Query:   528 ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAF-EDMITCLCKTGRIKEAC 586
             I PT  S+  L   LC  G +A A ++ DE+  K I P       MI   C++G   +  
Sbjct:   546 ILPTPISYSILVNALCSKGHLAEAFRVWDEMISKNIKPTVMICNSMIKGYCRSGNASDGE 605

Query:   587 KLADGIVDREREIPGKIR-TALINALRKAGNADLAIKLM 624
                + ++  E  +P  I    LI    +  N   A  L+
Sbjct:   606 SFLEKMIS-EGFVPDCISYNTLIYGFVREENMSKAFGLV 643

GO:0005739 "mitochondrion" evidence=ISM

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9LR67	PPR9_ARATH	No assigned EC number	0.6890	1.0	0.9848	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	650
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	3e-32
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-32
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-27
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-25
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	7e-24
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	4e-19
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-15
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-14
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-12
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-10
pfam13041	50	pfam13041, PPR_2, PPR repeat family	3e-10
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-09
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-08
pfam01535	31	pfam01535, PPR, PPR repeat	4e-08
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-08
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-08
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-07
pfam01535	31	pfam01535, PPR, PPR repeat	4e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	7e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-06
pfam01535	31	pfam01535, PPR, PPR repeat	4e-06
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	1e-05
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	2e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	3e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	3e-05
COG0457	291	COG0457, NrfG, FOG: TPR repeat [General function p	6e-05
pfam01535	31	pfam01535, PPR, PPR repeat	6e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	6e-05
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	1e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-04
pfam13432	65	pfam13432, TPR_16, Tetratricopeptide repeat	2e-04
pfam01535	31	pfam01535, PPR, PPR repeat	3e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	5e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	8e-04
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.001
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.001
cd00189	100	cd00189, TPR, Tetratricopeptide repeat domain; typ	0.001
pfam01535	31	pfam01535, PPR, PPR repeat	0.002
PRK15174	656	PRK15174, PRK15174, Vi polysaccharide export prote	0.002
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	0.003
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	0.004
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.004

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score =  133 bits (336), Expect = 3e-32
 Identities = 121/587 (20%), Positives = 224/587 (38%), Gaps = 102/587 (17%)

Query: 42  SFTSNPRSANSFPPPEWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSF 101
            +      A S   P        +   VS   N         +            N    
Sbjct: 295 FYEEKQSRAKSSRLP----NVKGLRKGVSSATNS--------LSLDK-------KNNGVK 335

Query: 102 CRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLI------D 155
             +   + S    S V   + ++   N G+        ++K    ++ Y  L+      D
Sbjct: 336 DAELPGQSSGQAASDVEEENSLA-AYNGGVS------GKRKSPEYIDAYNRLLRDGRIKD 388

Query: 156 CLALCGDVDRVRLV----------FNELKEKG-----FLMTVSAANSLIKSFGGLGMV-- 198
           C+ L  D+++  L+          F   K++      F       N  + +F  L  V  
Sbjct: 389 CIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMSVCA 448

Query: 199 -----EELLWVWRSMKENGIEPSLYTYNFLMN-----GLVNSMFIESSELVFKVMENGKV 248
                +  L V R ++E G++     Y  L++     G V++MF      VF  M N  V
Sbjct: 449 SSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMF-----EVFHEMVNAGV 503

Query: 249 GPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLS 308
             +V T+  +I G  + G+  KA   +  M ++NV+PD++ +  LI AC   G  D    
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

Query: 309 LYHEMDEKGIEI-PSH-AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS 366
           +  EM  +   I P H     ++      G+      +++ +     +    +YT  ++S
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623

Query: 367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN 426
            ++ G  + A++I++ MK +GV+PDE                                  
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDE---------------------------------- 649

Query: 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK 486
            +F+S+L+D  G AG +D+A E+ ++  ++G    +  Y+ L+ A +      +AL L++
Sbjct: 650 -VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708

Query: 487 RMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG 546
            ++      TV T   LI  + + ++  +AL++   M   G+ P   ++  L +      
Sbjct: 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKD 768

Query: 547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV 593
                  +L +    GI P       IT LC   R ++AC L + +V
Sbjct: 769 DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLR-RFEKACALGEPVV 814

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  131 bits (332), Expect = 6e-32
 Identities = 115/506 (22%), Positives = 209/506 (41%), Gaps = 95/506 (18%)

Query: 152 SLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKEN 211
           +LI     CGDV   RLVF+ +          + N++I  +   G   E L ++ +M+E 
Sbjct: 227 ALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMREL 282

Query: 212 GIEPSLYT-----------------------------------YNFLMNGLVNSMFIESS 236
            ++P L T                                    N L+   ++      +
Sbjct: 283 SVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 237 ELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQA 296
           E VF  ME      D V++  MI GY K G   KA+E +  ME  NV PD+IT  +++ A
Sbjct: 343 EKVFSRMET----KDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398

Query: 297 CYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN 356
           C   GD D  + L HE+ E+                       +G   +           
Sbjct: 399 CACLGDLDVGVKL-HELAER-----------------------KGLISY----------- 423

Query: 357 VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFE 416
           V +  ALI+ Y+K   +++A+ +F  +     E D +++  II+GL  N R  EA+ +F 
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFR 479

Query: 417 FCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476
                 +  N++   + +    + G +   +E+   ++  G   D +  N L+D   +CG
Sbjct: 480 QMLLT-LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCG 538

Query: 477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFR 536
           +++ A   F        ++ V ++ IL+ G     +   A++L++ M++ G+ P   +F 
Sbjct: 539 RMNYAWNQFN-----SHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFI 593

Query: 537 ALSIGLCLSGKVARACKILDELAPK-GIIPETA-FEDMITCLCKTGRIKEACKLADGI-V 593
           +L      SG V +  +    +  K  I P    +  ++  L + G++ EA    + + +
Sbjct: 594 SLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPI 653

Query: 594 DREREIPGKIRTALINALRKAGNADL 619
             +  + G    AL+NA R   + +L
Sbjct: 654 TPDPAVWG----ALLNACRIHRHVEL 675

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score =  116 bits (293), Expect = 4e-27
 Identities = 110/465 (23%), Positives = 193/465 (41%), Gaps = 96/465 (20%)

Query: 161 GDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYT- 219
           G++     VF ++ E+     + + N L+  +   G  +E L ++  M   G+ P +YT 
Sbjct: 135 GELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190

Query: 220 -------------------------YNF-----LMNGLVNSMF-----IESSELVFKVME 244
                                    + F     ++N L+ +M+     + S+ LVF  M 
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI-TMYVKCGDVVSARLVFDRMP 249

Query: 245 NGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD 304
                 D +++N MI GY + G+  + +E F  M   +V PD +T  ++I AC L GD  
Sbjct: 250 R----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGD-- 303

Query: 305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALI 364
               L  EM         H Y                      +++ G   +V++  +LI
Sbjct: 304 --ERLGREM---------HGY----------------------VVKTGFAVDVSVCNSLI 330

Query: 365 DSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVA 424
             Y  LGS  EA  +F RM+ +    D V++  +ISG  KN   ++A++ +     + V+
Sbjct: 331 QMYLSLGSWGEAEKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVS 386

Query: 425 VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL 484
            + +  +S++      G +D   +L E    KG        N LI+  +KC  +D+AL +
Sbjct: 387 PDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEV 446

Query: 485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GITPTAASFRALSI 540
           F  +     ++ V ++T +I G+   +R  EAL  +  M+       +T  AA      I
Sbjct: 447 FHNIP----EKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAALSACARI 502

Query: 541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA 585
           G  + GK   A  +   +   G +P  A  D+     + GR+  A
Sbjct: 503 GALMCGKEIHAHVLRTGIGFDGFLP-NALLDLYV---RCGRMNYA 543

Length = 857

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  109 bits (275), Expect = 6e-25
 Identities = 128/575 (22%), Positives = 234/575 (40%), Gaps = 76/575 (13%)

Query: 37  MGPLASFTSNPRSANS---FPPP--EWVEPFNDVSDLVSCPQNLNPSPWVRQILNLLDGS 91
           +  +    SNPR  +S   F         PF+ +S   S  Q L P P ++     ++ S
Sbjct: 13  LDEIRDSLSNPRLLHSPRKFSLRGRRTKTPFSSISC-SSVEQGLKPRPRLKPEPIRIEVS 71

Query: 92  SDMEANL-DSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECY 150
              +A L D+  RK  + L       V        R    L LF        ++     Y
Sbjct: 72  ESKDARLDDTQIRKSGVSLCSQIEKLVACG-----RHREALELFEILEAGCPFTLPASTY 126

Query: 151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKE 210
            +L++       +  V+ V+  ++  GF       N ++      GM+ +   ++  M E
Sbjct: 127 DALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE 186

Query: 211 NGIEPSLYTYNFLMNGLVNSMFIESSELVFKVM-ENGK---------------------- 247
                +L ++  ++ GLV++     +  +F+ M E+G                       
Sbjct: 187 R----NLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARA 242

Query: 248 ------------VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQ 295
                       V  D      +I  Y K G  + A   F  M  +      + + +++ 
Sbjct: 243 GQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTT----VAWNSMLA 298

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
              L G  +  L LY+EM + G+ I    ++++I    ++            +IR G   
Sbjct: 299 GYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL 358

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           ++   TAL+D Y+K G M +A N+F+RM  + +    +++  +I+G   + R  +A++ F
Sbjct: 359 DIVANTALVDLYSKWGRMEDARNVFDRMPRKNL----ISWNALIAGYGNHGRGTKAVEMF 414

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVE--KGCPRDSYCYNVLIDALA 473
           E   A GVA N + + +++     +G  ++  E+F+ M E  +  PR  + Y  +I+ L 
Sbjct: 415 ERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMH-YACMIELLG 473

Query: 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEE-----ALKLWDMMIDKGI 528
           + G LDEA A+ +R        TV  +  L+    + H+N E     A KL+ M  +K  
Sbjct: 474 REGLLDEAYAMIRRAP---FKPTVNMWAALLTAC-RIHKNLELGRLAAEKLYGMGPEK-- 527

Query: 529 TPTAASFRALSIGLCLSGKVARACKILDELAPKGI 563
                ++  L      SG+ A A K+++ L  KG+
Sbjct: 528 ---LNNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559

Length = 697

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score =  106 bits (266), Expect = 7e-24
 Identities = 94/426 (22%), Positives = 186/426 (43%), Gaps = 27/426 (6%)

Query: 219 TYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAM 278
           TY+ L+   +    I   + V+  +E+    PD    N ++  + K G    A   F  M
Sbjct: 125 TYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEM 184

Query: 279 EARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC 338
             RN+     ++ T+I      G++    +L+ EM E G +     + +++     +G  
Sbjct: 185 PERNL----ASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSA 240

Query: 339 IEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVI 398
             G  +   +++ G   +  +  ALID Y+K G + +A  +F+ M     E   V +  +
Sbjct: 241 RAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAWNSM 296

Query: 399 ISGLCKNERLEEAMQ-YFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG 457
           ++G   +   EEA+  Y+E   + GV+++   +S +I    +   ++ A++    ++  G
Sbjct: 297 LAGYALHGYSEEALCLYYEMRDS-GVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTG 355

Query: 458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEAL 517
            P D      L+D  +K G++++A  +F RM      + + ++  LI G     R  +A+
Sbjct: 356 FPLDIVANTALVDLYSKWGRMEDARNVFDRMP----RKNLISWNALIAGYGNHGRGTKAV 411

Query: 518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP-KGIIPETA-FEDMITC 575
           ++++ MI +G+ P   +F A+      SG   +  +I   ++    I P    +  MI  
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471

Query: 576 LCKTGRIKEACKLADGIVDREREIPGK----IRTALINALRKAGNADLAIKLMHSKIGVG 631
           L + G + EA  +        R  P K    +  AL+ A R   N +L         G+G
Sbjct: 472 LGREGLLDEAYAMI-------RRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG 524

Query: 632 YDRMGS 637
            +++ +
Sbjct: 525 PEKLNN 530

Length = 697

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 91.4 bits (227), Expect = 4e-19
 Identities = 97/387 (25%), Positives = 161/387 (41%), Gaps = 25/387 (6%)

Query: 181 TVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVF 240
           +   +NS +++    G +E+ L +  SM+E  +      Y  L         +E    V 
Sbjct: 50  STHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVC 109

Query: 241 KVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLE 300
               +      V   N M+  + + G+   A   F  M  R++     ++  L+      
Sbjct: 110 SRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDL----FSWNVLVGGYAKA 165

Query: 301 GDFDSCLSLYHEMDEKGIEIPSHAYNLVI---GGLCKVGKCIEGHAIFESMIRRGCQPNV 357
           G FD  L LYH M   G+    + +  V+   GG+  + +  E HA    ++R G + +V
Sbjct: 166 GYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHA---HVVRFGFELDV 222

Query: 358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEF 417
            +  ALI  Y K G +  A  +F+RM       D +++  +ISG  +N    E ++ F  
Sbjct: 223 DVVNALITMYVKCGDVVSARLVFDRMPRR----DCISWNAMISGYFENGECLEGLELFFT 278

Query: 418 CRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK 477
            R   V  + M  +S+I      G      E+   +V+ G   D    N LI      G 
Sbjct: 279 MRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGS 338

Query: 478 LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP---TAAS 534
             EA  +F RME     +   ++T +I+G  K    ++AL+ + +M    ++P   T AS
Sbjct: 339 WGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIAS 394

Query: 535 FRALSIGLCLSGKVARACKILDELAPK 561
              LS   CL G +    K L ELA +
Sbjct: 395 --VLSACACL-GDLDVGVK-LHELAER 417

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 71.7 bits (177), Expect = 5e-16
 Identities = 23/50 (46%), Positives = 32/50 (64%)

Query: 355 PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK 404
           P+V  Y  LID Y K G + EA+ +F  MK  G++P+  TY ++I GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 70.1 bits (173), Expect = 2e-15
 Identities = 24/48 (50%), Positives = 33/48 (68%)

Query: 250 PDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQAC 297
           PDVVTYNT+I GYCK GK ++A++ F  M+ R ++P+  TY  LI   
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.8 bits (167), Expect = 1e-14
 Identities = 22/45 (48%), Positives = 32/45 (71%)

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK 474
           Y++LIDG  K G+V+EA +LF EM ++G   + Y Y++LID L K
Sbjct: 6   YNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 67.4 bits (166), Expect = 2e-14
 Identities = 25/49 (51%), Positives = 31/49 (63%)

Query: 461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK 509
           D   YN LID   K GK++EAL LF  M+  G    VYTY+ILI+G+ K
Sbjct: 2   DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 68.7 bits (168), Expect = 6e-12
 Identities = 56/218 (25%), Positives = 89/218 (40%), Gaps = 46/218 (21%)

Query: 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLY 310
           DVV++N ++ GY   GK   A+E F  M    V PD++T+++L+ AC   G     L  +
Sbjct: 553 DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYF 612

Query: 311 HEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKL 370
           H M+EK        Y++                           PN+  Y  ++D   + 
Sbjct: 613 HSMEEK--------YSIT--------------------------PNLKHYACVVDLLGRA 638

Query: 371 GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL----EEAMQYFEFCRANGVAVN 426
           G + EA N   +M    + PD   +G +++  C+  R     E A Q+      N V   
Sbjct: 639 GKLTEAYNFINKMP---ITPDPAVWGALLNA-CRIHRHVELGELAAQHIFELDPNSVG-- 692

Query: 427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC 464
             +Y  L +    AG+ DE   + + M E G   D  C
Sbjct: 693 --YYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGC 728

Length = 857

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 17/50 (34%), Positives = 28/50 (56%)

Query: 215 PSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK 264
           P + TYN L++G      +E +  +F  M+   + P+V TY+ +I G CK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.9 bits (136), Expect = 2e-10
 Identities = 21/46 (45%), Positives = 26/46 (56%)

Query: 324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK 369
            YN +I G CK GK  E   +F  M +RG +PNV  Y+ LID   K
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 55.5 bits (135), Expect = 3e-10
 Identities = 21/47 (44%), Positives = 29/47 (61%)

Query: 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC 543
           V TY  LI+G  K+ + EEALKL++ M  +GI P   ++  L  GLC
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 62.2 bits (151), Expect = 6e-10
 Identities = 65/270 (24%), Positives = 107/270 (39%), Gaps = 54/270 (20%)

Query: 357 VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF- 415
            + Y AL+++   L S+     ++  ++  G EPD+     ++    K   L +A + F 
Sbjct: 123 ASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFD 182

Query: 416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC---PR------------ 460
           E    N  +     + ++I GL  AG   EA  LF EM E G    PR            
Sbjct: 183 EMPERNLAS-----WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL 237

Query: 461 --------------------DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTY 500
                               D++    LID  +KCG +++A  +F  M     ++T   +
Sbjct: 238 GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMP----EKTTVAW 293

Query: 501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL-----SIGLCLSGKVARACKIL 555
             ++ G      +EEAL L+  M D G++    +F  +      + L    K A A  I 
Sbjct: 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353

Query: 556 DELAPKGIIPETAFEDMITCLCKTGRIKEA 585
               P  I+  TA  D+     K GR+++A
Sbjct: 354 TGF-PLDIVANTALVDL---YSKWGRMEDA 379

Length = 697

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.0 bits (126), Expect = 4e-09
 Identities = 16/30 (53%), Positives = 21/30 (70%)

Query: 250 PDVVTYNTMIKGYCKVGKTQKAMEKFRAME 279
           PDVVTYNT+I G C+ G+  +A+E    ME
Sbjct: 5   PDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 50.8 bits (123), Expect = 8e-09
 Identities = 18/34 (52%), Positives = 25/34 (73%)

Query: 421 NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMV 454
            G+  + + Y++LIDGL +AGRVDEA EL +EM 
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 55.6 bits (132), Expect = 2e-08
 Identities = 52/232 (22%), Positives = 88/232 (37%), Gaps = 5/232 (2%)

Query: 298 YLEGDFDSCLSLYHEMDEKGIEIP-SHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN 356
            L G+    L L  E  E       +    L+   L K+G+  E   + E  +     PN
Sbjct: 34  ELLGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN 93

Query: 357 VA-IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
           +A     L      LG   EA+ + E+      +PD     + +  L +    EEA++ +
Sbjct: 94  LAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELY 153

Query: 416 E--FCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA 473
           E        +   A    +L   L   GR +EA EL E+ ++     D+     L     
Sbjct: 154 EKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYL 213

Query: 474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID 525
           K GK +EAL  +++  +            L   + +  R EEAL+  +  ++
Sbjct: 214 KLGKYEEALEYYEKALEL-DPDNAEALYNLALLLLELGRYEEALEALEKALE 264

Length = 291

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 49.3 bits (119), Expect = 4e-08
 Identities = 16/34 (47%), Positives = 20/34 (58%)

Query: 456 KGCPRDSYCYNVLIDALAKCGKLDEALALFKRME 489
           KG   D   YN LID L + G++DEA+ L   ME
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 49.0 bits (118), Expect = 4e-08
 Identities = 18/29 (62%), Positives = 23/29 (79%)

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGC 458
           Y+SLI G  KAG+++EA ELF+EM EKG 
Sbjct: 3   YNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 48.6 bits (117), Expect = 6e-08
 Identities = 21/33 (63%), Positives = 26/33 (78%)

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS 462
           Y++LIDGL KAGRV+EA ELF+EM E+G   D 
Sbjct: 3   YNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 48.1 bits (116), Expect = 8e-08
 Identities = 13/30 (43%), Positives = 22/30 (73%)

Query: 387 GVEPDEVTYGVIISGLCKNERLEEAMQYFE 416
           G++PD VTY  +I GLC+  R++EA++  +
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLD 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.8 bits (115), Expect = 1e-07
 Identities = 19/44 (43%), Positives = 30/44 (68%)

Query: 186 NSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN 229
           N+LI  +   G VEE L ++  MK+ GI+P++YTY+ L++GL  
Sbjct: 7   NTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 45.9 bits (110), Expect = 4e-07
 Identities = 16/31 (51%), Positives = 20/31 (64%)

Query: 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGC 493
             YN LI    K GKL+EAL LFK M+++G 
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 45.5 bits (109), Expect = 6e-07
 Identities = 17/34 (50%), Positives = 26/34 (76%)

Query: 253 VTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD 286
           VTYNT+I G CK G+ ++A+E F+ M+ R ++PD
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.4 bits (109), Expect = 7e-07
 Identities = 11/34 (32%), Positives = 21/34 (61%)

Query: 351 RGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK 384
           +G +P+V  Y  LID   + G ++EA+ + + M+
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 16/31 (51%), Positives = 21/31 (67%)

Query: 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGC 493
             YN LID L K G+++EAL LFK M++ G 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 43.2 bits (103), Expect = 4e-06
 Identities = 16/31 (51%), Positives = 24/31 (77%)

Query: 253 VTYNTMIKGYCKVGKTQKAMEKFRAMEARNV 283
           VTYN++I GYCK GK ++A+E F+ M+ + V
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 42.2 bits (100), Expect = 1e-05
 Identities = 12/34 (35%), Positives = 20/34 (58%)

Query: 357 VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEP 390
           +  Y AL+ + AK G  + A+ + E MK  G++P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 41.2 bits (98), Expect = 2e-05
 Identities = 13/32 (40%), Positives = 19/32 (59%)

Query: 492 GCDQTVYTYTILINGMFKEHRNEEALKLWDMM 523
           G    V TY  LI+G+ +  R +EA++L D M
Sbjct: 2   GLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.4 bits (108), Expect = 2e-05
 Identities = 42/206 (20%), Positives = 79/206 (38%), Gaps = 4/206 (1%)

Query: 356 NVAIYTALIDSYAKLGSMNEAINIFERM-KYEGVEPDEVTYGVIISGLCKNERLEEAMQY 414
              +   L  +  KLG + EA+ + E+  + E +         +   L    + EEA++ 
Sbjct: 58  LAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL 117

Query: 415 FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY--CYNVLIDAL 472
            E   A     +       +  L + G  +EA EL+E+ +E     +        L   L
Sbjct: 118 LEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALL 177

Query: 473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA 532
              G+ +EAL L ++      D        L     K  + EEAL+ ++  ++      A
Sbjct: 178 EALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDP-DNA 236

Query: 533 ASFRALSIGLCLSGKVARACKILDEL 558
            +   L++ L   G+   A + L++ 
Sbjct: 237 EALYNLALLLLELGRYEEALEALEKA 262

Length = 291

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 46.4 bits (108), Expect = 3e-05
 Identities = 49/222 (22%), Positives = 82/222 (36%), Gaps = 5/222 (2%)

Query: 406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-SYC 464
           + L  A+       A  +A       + +  L   G + EA EL EE +E     D +  
Sbjct: 2   KDLLLALAILLEALAKLLAEALALLEAGLALLELLGELAEALELLEEALELLPNSDLAGL 61

Query: 465 YNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMM 523
             +L  AL K G+L+EAL L ++  +             L   +    + EEAL+L +  
Sbjct: 62  LLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKA 121

Query: 524 IDKGITPTAASFRALSIGLCLSGKVARACKILD---ELAPKGIIPETAFEDMITCLCKTG 580
           +     P  A        L   G    A ++ +   EL P+      A   +   L   G
Sbjct: 122 LALDPDPDLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALG 181

Query: 581 RIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIK 622
           R +EA +L +  +    +   +    L     K G  + A++
Sbjct: 182 RYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALE 223

Length = 291

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 41.0 bits (97), Expect = 3e-05
 Identities = 14/31 (45%), Positives = 18/31 (58%)

Query: 463 YCYNVLIDALAKCGKLDEALALFKRMEDEGC 493
             YN L+ ALAK G  D ALA+ + M+  G 
Sbjct: 2   ETYNALLLALAKAGDPDLALAVLEEMKASGL 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|223533 COG0457, NrfG, FOG: TPR repeat [General function prediction only]

 Score = 45.2 bits (105), Expect = 6e-05
 Identities = 44/221 (19%), Positives = 82/221 (37%), Gaps = 4/221 (1%)

Query: 199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP-DVVTYNT 257
           E L  +  +++             L   L+    +E +  + +     ++ P        
Sbjct: 41  EALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLN 100

Query: 258 MIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKG 317
           +      +GK ++A+E      A +  PD    +  + A Y  GD++  L LY +  E  
Sbjct: 101 LGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGALYELGDYEEALELYEKALELD 160

Query: 318 IEIPSHAYNLVIGG--LCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNE 375
            E+   A  L+  G  L  +G+  E   + E  ++     +      L   Y KLG   E
Sbjct: 161 PELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEE 220

Query: 376 AINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFE 416
           A+  +E+   E    +      +   L +  R EEA++  E
Sbjct: 221 ALEYYEKA-LELDPDNAEALYNLALLLLELGRYEEALEALE 260

Length = 291

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 13/30 (43%), Positives = 19/30 (63%)

Query: 359 IYTALIDSYAKLGSMNEAINIFERMKYEGV 388
            Y +LI  Y K G + EA+ +F+ MK +GV
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 40.1 bits (95), Expect = 6e-05
 Identities = 15/35 (42%), Positives = 21/35 (60%)

Query: 323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV 357
             YN +I GLCK G+  E   +F+ M  RG +P+V
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 39.0 bits (92), Expect = 1e-04
 Identities = 15/34 (44%), Positives = 20/34 (58%)

Query: 359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE 392
            Y  LID   K G + EA+ +F+ MK  G+EPD 
Sbjct: 2   TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 38.6 bits (91), Expect = 2e-04
 Identities = 16/35 (45%), Positives = 22/35 (62%)

Query: 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA 532
            TY  LI+G+ K  R EEAL+L+  M ++GI P  
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|222123 pfam13432, TPR_16, Tetratricopeptide repeat

 Score = 39.6 bits (93), Expect = 2e-04
 Identities = 16/53 (30%), Positives = 25/53 (47%), Gaps = 1/53 (1%)

Query: 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE 491
           +AG  DEA    E  + +  P  +    +L +AL + G+L EA AL +     
Sbjct: 9   RAGDYDEALAALEAALARY-PLAAEALLLLGEALLRQGRLAEAAALLRAALAA 60

Length = 65

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 498 YTYTILINGMFKEHRNEEALKLWDMMIDKGI 528
            TY  LI+G  K  + EEAL+L+  M +KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 37.5 bits (88), Expect = 5e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 252 VVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP 285
           + TYN ++    K G    A+     M+A  ++P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.8 bits (86), Expect = 8e-04
 Identities = 9/34 (26%), Positives = 16/34 (47%)

Query: 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITP 530
           + TY  L+  + K    + AL + + M   G+ P
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.7 bits (86), Expect = 0.001
 Identities = 12/31 (38%), Positives = 17/31 (54%)

Query: 288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGI 318
           +TY +LI      G  +  L L+ EM EKG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 36.3 bits (85), Expect = 0.001
 Identities = 12/30 (40%), Positives = 16/30 (53%)

Query: 324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGC 353
            YN +I G CK GK  E   +F+ M  +G 
Sbjct: 2   TYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 36.4 bits (85), Expect = 0.001
 Identities = 12/29 (41%), Positives = 16/29 (55%)

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGC 458
           Y++L+  L KAG  D A  + EEM   G 
Sbjct: 4   YNALLLALAKAGDPDLALAVLEEMKASGL 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|238112 cd00189, TPR, Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]- X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and Cdc27p components of the cyclosome/APC, the Pex5p/Pas10p receptor for peroxisomal targeting signals, the Tom70p co-receptor for mitochondrial targeting signals, Ser/Thr phosphatase 5C and the p110 subunit of O-GlcNAc transferase; three copies of the repeat are present here

 Score = 38.1 bits (89), Expect = 0.001
 Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 4/83 (4%)

Query: 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR-MEDEGCDQTV 497
           K G  DEA E +E+ +E   P ++  Y  L  A  K GK +EAL  +++ +E +  +   
Sbjct: 12  KLGDYDEALEYYEKALEL-DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKA 70

Query: 498 YTYTILINGMFKEHRNEEALKLW 520
           Y    L    +K  + EEAL+ +
Sbjct: 71  YYN--LGLAYYKLGKYEEALEAY 91

Length = 100

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 35.9 bits (84), Expect = 0.002
 Identities = 15/31 (48%), Positives = 21/31 (67%)

Query: 393 VTYGVIISGLCKNERLEEAMQYFEFCRANGV 423
           VTY  +ISG CK  +LEEA++ F+  +  GV
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|185096 PRK15174, PRK15174, Vi polysaccharide export protein VexE; Provisional

 Score = 41.3 bits (96), Expect = 0.002
 Identities = 16/109 (14%), Positives = 31/109 (28%), Gaps = 4/109 (3%)

Query: 527 GITPTAASFRALSIGLCL-SGKVARACKILDELAPKGIIP-ETAFEDMITCLCKTGRIKE 584
                 +   AL +   +   K  +A  +    A +     +              R+ E
Sbjct: 138 LAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIA--TCLSFLNKSRLPE 195

Query: 585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD 633
              LA  ++        +     ++ L   G    AI+   S +  G D
Sbjct: 196 DHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD 244

Length = 656

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 40.2 bits (94), Expect = 0.003
 Identities = 47/208 (22%), Positives = 81/208 (38%), Gaps = 28/208 (13%)

Query: 101 FCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKK--YSHNLECYI------- 151
           F R+ L+ L PN V+ +     +S    +G      A    K  ++H L   I       
Sbjct: 477 FFRQMLLTLKPNSVTLI---AALSACARIG------ALMCGKEIHAHVLRTGIGFDGFLP 527

Query: 152 -SLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKE 210
            +L+D    CG ++     FN   EK     V + N L+  +   G     + ++  M E
Sbjct: 528 NALLDLYVRCGRMNYAWNQFN-SHEK----DVVSWNILLTGYVAHGKGSMAVELFNRMVE 582

Query: 211 NGIEPSLYTYNFLMNGLVNS-MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQ 269
           +G+ P   T+  L+     S M  +  E    + E   + P++  Y  ++    + GK  
Sbjct: 583 SGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLT 642

Query: 270 KAMEKFRAMEARNVQPDKITYMTLIQAC 297
           +A      M    + PD   +  L+ AC
Sbjct: 643 EAYNFINKMP---ITPDPAVWGALLNAC 667

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 35.1 bits (82), Expect = 0.004
 Identities = 14/33 (42%), Positives = 18/33 (54%)

Query: 288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI 320
           +TY TLI      G  +  L L+ EM E+GIE 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEP 33

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.004
 Identities = 11/31 (35%), Positives = 16/31 (51%)

Query: 289 TYMTLIQACYLEGDFDSCLSLYHEMDEKGIE 319
           TY  L+ A    GD D  L++  EM   G++
Sbjct: 3   TYNALLLALAKAGDPDLALAVLEEMKASGLK 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	650
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	100.0
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.97
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.96
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.95
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.95
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.94
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.94
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.93
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.92
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.92
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK14574	822	hmsH outer membrane protein; Provisional	99.9
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.89
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.89
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.88
KOG2076	895	consensus RNA polymerase III transcription factor	99.86
KOG2076	895	consensus RNA polymerase III transcription factor	99.86
KOG2003	840	consensus TPR repeat-containing protein [General f	99.85
KOG2003	840	consensus TPR repeat-containing protein [General f	99.83
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.82
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.81
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.8
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.8
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.79
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.79
KOG1126	638	consensus DNA-binding cell division cycle control	99.78
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.77
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.77
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.77
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.76
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.76
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.75
KOG1126	638	consensus DNA-binding cell division cycle control	99.73
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.72
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.72
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.71
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.7
KOG1129	478	consensus TPR repeat-containing protein [General f	99.66
KOG2047	835	consensus mRNA splicing factor [RNA processing and	99.66
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.65
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.64
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.64
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.64
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.64
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.62
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	99.62
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.62
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	99.6
PRK12370	553	invasion protein regulator; Provisional	99.59
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.59
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	99.58
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	99.58
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.58
KOG1129	478	consensus TPR repeat-containing protein [General f	99.58
PRK12370	553	invasion protein regulator; Provisional	99.56
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.53
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.53
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.52
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.51
KOG2376	652	consensus Signal recognition particle, subunit Srp	99.5
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.49
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.48
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.48
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.46
PRK11189	296	lipoprotein NlpI; Provisional	99.46
PRK11189	296	lipoprotein NlpI; Provisional	99.45
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.4
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	99.39
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.38
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.37
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.36
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	99.36
PRK04841	903	transcriptional regulator MalT; Provisional	99.36
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	99.35
KOG1125	579	consensus TPR repeat-containing protein [General f	99.33
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.31
PLN02789	320	farnesyltranstransferase	99.3
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.3
KOG4340	459	consensus Uncharacterized conserved protein [Funct	99.3
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.29
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.28
KOG1125	579	consensus TPR repeat-containing protein [General f	99.22
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.22
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	99.22
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	99.21
PRK04841	903	transcriptional regulator MalT; Provisional	99.18
PLN02789	320	farnesyltranstransferase	99.17
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.16
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.14
PF13041	50	PPR_2: PPR repeat family	99.14
PRK15359	144	type III secretion system chaperone protein SscB;	99.11
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	99.11
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	99.1
KOG3616	1636	consensus Selective LIM binding factor [Transcript	99.1
PRK15359	144	type III secretion system chaperone protein SscB;	99.09
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.08
PF13041	50	PPR_2: PPR repeat family	99.08
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	99.08
PRK10370	198	formate-dependent nitrite reductase complex subuni	99.06
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	99.04
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.04
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	99.03
TIGR02552	135	LcrH_SycD type III secretion low calcium response	99.03
KOG3060	289	consensus Uncharacterized conserved protein [Funct	99.02
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.02
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	99.01
KOG1128	777	consensus Uncharacterized conserved protein, conta	99.01
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	99.0
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.97
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.97
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.95
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.94
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.93
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.89
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.89
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.87
KOG3060	289	consensus Uncharacterized conserved protein [Funct	98.84
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.77
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.75
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.67
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.67
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.57
KOG0553	304	consensus TPR repeat-containing protein [General f	98.56
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.56
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.55
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.52
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.51
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.5
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.5
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.48
KOG0553	304	consensus TPR repeat-containing protein [General f	98.48
PF12854	34	PPR_1: PPR repeat	98.47
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.47
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	98.44
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	98.42
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.42
PF12854	34	PPR_1: PPR repeat	98.39
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	98.38
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.36
COG4700	251	Uncharacterized protein conserved in bacteria cont	98.32
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	98.3
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	98.29
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.27
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	98.27
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	98.26
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.25
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	98.23
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.19
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.17
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	98.17
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	98.15
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	98.14
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	98.13
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	98.13
PRK10803	263	tol-pal system protein YbgF; Provisional	98.12
PF12688	120	TPR_5: Tetratrico peptide repeat	98.1
PRK15331	165	chaperone protein SicA; Provisional	98.1
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	98.06
PF12688	120	TPR_5: Tetratrico peptide repeat	98.04
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	98.04
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	98.04
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	98.02
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.98
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.98
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.97
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.93
COG4700	251	Uncharacterized protein conserved in bacteria cont	97.92
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.91
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.89
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.87
PRK10803	263	tol-pal system protein YbgF; Provisional	97.85
PRK15331	165	chaperone protein SicA; Provisional	97.85
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.83
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.82
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.82
PF13371	73	TPR_9: Tetratricopeptide repeat	97.8
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.78
COG0457	291	NrfG FOG: TPR repeat [General function prediction	97.77
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.75
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.74
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.72
PF13371	73	TPR_9: Tetratricopeptide repeat	97.71
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	97.71
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.7
PRK11906	458	transcriptional regulator; Provisional	97.7
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.69
PRK11906	458	transcriptional regulator; Provisional	97.68
PF13812	34	PPR_3: Pentatricopeptide repeat domain	97.65
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.63
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.62
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.6
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	97.59
COG3898	531	Uncharacterized membrane-bound protein [Function u	97.59
KOG1258	577	consensus mRNA processing protein [RNA processing	97.53
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.46
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.43
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.42
KOG4555	175	consensus TPR repeat-containing protein [Function	97.42
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	97.41
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.4
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.4
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	97.39
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.39
PF13512	142	TPR_18: Tetratricopeptide repeat	97.38
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	97.35
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.34
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.33
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	97.31
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.23
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.23
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	97.22
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	97.22
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.22
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	97.22
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.17
COG4105	254	ComL DNA uptake lipoprotein [General function pred	97.14
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	97.12
KOG4234	271	consensus TPR repeat-containing protein [General f	97.12
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	97.07
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	97.07
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.02
KOG1941	518	consensus Acetylcholine receptor-associated protei	97.01
COG0457	291	NrfG FOG: TPR repeat [General function prediction	96.98
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.97
KOG1258	577	consensus mRNA processing protein [RNA processing	96.96
PF13428	44	TPR_14: Tetratricopeptide repeat	96.95
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.94
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	96.93
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.92
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.92
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.9
COG3118	304	Thioredoxin domain-containing protein [Posttransla	96.88
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.85
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	96.85
KOG4648	536	consensus Uncharacterized conserved protein, conta	96.84
PF13428	44	TPR_14: Tetratricopeptide repeat	96.81
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.81
KOG4555	175	consensus TPR repeat-containing protein [Function	96.79
KOG2610	491	consensus Uncharacterized conserved protein [Funct	96.76
KOG1585	308	consensus Protein required for fusion of vesicles	96.74
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	96.72
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	96.71
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.67
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	96.65
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	96.54
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	96.51
PF13512	142	TPR_18: Tetratricopeptide repeat	96.48
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.42
PF13431	34	TPR_17: Tetratricopeptide repeat	96.33
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	96.25
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	96.22
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.22
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	96.21
KOG4234	271	consensus TPR repeat-containing protein [General f	96.2
COG4785	297	NlpI Lipoprotein NlpI, contains TPR repeats [Gener	96.19
PF13431	34	TPR_17: Tetratricopeptide repeat	96.18
KOG1586	288	consensus Protein required for fusion of vesicles	96.18
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	96.01
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	95.98
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	95.94
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.9
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	95.86
KOG1550	552	consensus Extracellular protein SEL-1 and related	95.8
KOG2471	696	consensus TPR repeat-containing protein [General f	95.76
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.76
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.66
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	95.64
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.62
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	95.58
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.35
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	95.35
COG1747	711	Uncharacterized N-terminal domain of the transcrip	95.34
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.29
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	95.12
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	95.1
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	95.06
PF06552	186	TOM20_plant: Plant specific mitochondrial import r	95.04
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.04
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	95.03
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	95.03
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	95.01
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.92
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	94.84
KOG4648	536	consensus Uncharacterized conserved protein, conta	94.66
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.66
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	94.64
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	94.63
KOG1585	308	consensus Protein required for fusion of vesicles	94.63
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	94.56
smart00299	140	CLH Clathrin heavy chain repeat homology.	94.38
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.3
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	94.18
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	94.16
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	94.03
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	93.89
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	93.89
KOG2396	568	consensus HAT (Half-A-TPR) repeat-containing prote	93.53
COG0790	292	FOG: TPR repeat, SEL1 subfamily [General function	93.47
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	93.23
KOG0545	329	consensus Aryl-hydrocarbon receptor-interacting pr	93.16
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.05
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	92.8
KOG3364	149	consensus Membrane protein involved in organellar	92.77
COG2976	207	Uncharacterized protein conserved in bacteria [Fun	92.71
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	92.68
COG2909	894	MalT ATP-dependent transcriptional regulator [Tran	92.62
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	92.55
KOG4507	886	consensus Uncharacterized conserved protein, conta	92.54
COG1747	711	Uncharacterized N-terminal domain of the transcrip	92.51
COG4455	273	ImpE Protein of avirulence locus involved in tempe	92.4
KOG2471	696	consensus TPR repeat-containing protein [General f	92.23
COG3947	361	Response regulator containing CheY-like receiver a	92.2
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	92.18
KOG3941	406	consensus Intermediate in Toll signal transduction	92.18
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	92.08
PRK11619	644	lytic murein transglycosylase; Provisional	91.84
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	91.77
KOG2066	846	consensus Vacuolar assembly/sorting protein VPS41	91.76
KOG3941	406	consensus Intermediate in Toll signal transduction	91.56
PF08424	321	NRDE-2: NRDE-2, necessary for RNA interference; In	91.44
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	91.42
KOG3364	149	consensus Membrane protein involved in organellar	91.15
KOG0530	318	consensus Protein farnesyltransferase, alpha subun	90.99
KOG4507	886	consensus Uncharacterized conserved protein, conta	90.84
KOG4642	284	consensus Chaperone-dependent E3 ubiquitin protein	90.74
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	90.58
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	90.46
PF13181	34	TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_	90.44
PF13174	33	TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_	90.41
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	90.41
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	90.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	90.35
PRK09687	280	putative lyase; Provisional	90.05
PF04910	360	Tcf25: Transcriptional repressor TCF25; InterPro:	90.02
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	89.91
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.8
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	89.75
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	89.71
PF09986	214	DUF2225: Uncharacterized protein conserved in bact	89.62
COG5159	421	RPN6 26S proteasome regulatory complex component [	88.84
PRK12798	421	chemotaxis protein; Reviewed	88.69
KOG0403	645	consensus Neoplastic transformation suppressor Pdc	88.61
COG5159	421	RPN6 26S proteasome regulatory complex component [	88.58
KOG1464	440	consensus COP9 signalosome, subunit CSN2 [Posttran	88.53
KOG1308	377	consensus Hsp70-interacting protein Hip/Transient	88.13
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	88.02
KOG2062	929	consensus 26S proteasome regulatory complex, subun	87.79
KOG0376	476	consensus Serine-threonine phosphatase 2A, catalyt	87.02
KOG0890	2382	consensus Protein kinase of the PI-3 kinase family	87.02
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.94
PRK10941	269	hypothetical protein; Provisional	86.88
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	86.74
PRK11619	644	lytic murein transglycosylase; Provisional	86.7
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	86.47
KOG0991	333	consensus Replication factor C, subunit RFC2 [Repl	86.31
PF14561	90	TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S	86.3
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	86.23
PF07721	26	TPR_4: Tetratricopeptide repeat; InterPro: IPR0117	85.92
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	85.84
COG3947	361	Response regulator containing CheY-like receiver a	85.51
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	85.26
KOG4570	418	consensus Uncharacterized conserved protein [Funct	84.81
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	84.41
PRK09687	280	putative lyase; Provisional	84.37
COG4455	273	ImpE Protein of avirulence locus involved in tempe	84.17
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	84.08
smart00028	34	TPR Tetratricopeptide repeats. Repeats present in	83.7
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	82.99
KOG0687	393	consensus 26S proteasome regulatory complex, subun	82.77
KOG0551	390	consensus Hsp90 co-chaperone CNS1 (contains TPR re	82.7
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	82.69
KOG1586	288	consensus Protein required for fusion of vesicles	82.64
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	82.27
COG5191	435	Uncharacterized conserved protein, contains HAT (H	82.2
KOG0292	1202	consensus Vesicle coat complex COPI, alpha subunit	82.18
PRK10941	269	hypothetical protein; Provisional	82.12
TIGR02508	115	type_III_yscG type III secretion protein, YscG fam	81.62
PF07163	309	Pex26: Pex26 protein; InterPro: IPR010797 This fam	80.89
PF10579	80	Rapsyn_N: Rapsyn N-terminal myristoylation and lin	80.44
PF14853	53	Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe	80.38

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=4e-66  Score=552.57  Aligned_cols=536  Identities=19%  Similarity=0.261  Sum_probs=496.5

Q ss_pred             HHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 045674           98 LDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG  177 (650)
Q Consensus        98 l~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  177 (650)
                      +..+........+......+...+...|+++.|+++|+++.+.+-.+++...+..++..|.+.|.+++|..+|+.|..  
T Consensus       357 ~~~~~~~~~~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~--  434 (1060)
T PLN03218        357 LAAYNGGVSGKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN--  434 (1060)
T ss_pred             HHHhccccCCCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC--
Confidence            333333333333444555566666678999999999999988766677888888999999999999999999998874  


Q ss_pred             CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHH
Q 045674          178 FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNT  257 (650)
Q Consensus       178 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  257 (650)
                        |+..+|+.++.+|++.|+++.|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.
T Consensus       435 --pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTyna  512 (1060)
T PLN03218        435 --PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGA  512 (1060)
T ss_pred             --CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence              799999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhc
Q 045674          258 MIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE--KGIEIPSHAYNLVIGGLCKV  335 (650)
Q Consensus       258 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~  335 (650)
                      +|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|..  .++.||..+|+.++.+|++.
T Consensus       513 LI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~  592 (1060)
T PLN03218        513 LIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANA  592 (1060)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHC
Confidence            9999999999999999999999999999999999999999999999999999999986  67899999999999999999


Q ss_pred             CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHH
Q 045674          336 GKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF  415 (650)
Q Consensus       336 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~  415 (650)
                      |++++|.++|+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.+++
T Consensus       593 G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~  672 (1060)
T PLN03218        593 GQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEIL  672 (1060)
T ss_pred             CCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQ  495 (650)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  495 (650)
                      +.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus       673 ~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~P  752 (1060)
T PLN03218        673 QDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCP  752 (1060)
T ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----c-------------------CCHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----S-------------------GKVARAC  552 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~-------------------g~~~~A~  552 (650)
                      |..+|+.++.+|++.|++++|.+++++|.+.|+.||..+|+.++..|.+    .                   +..++|.
T Consensus       753 d~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al  832 (1060)
T PLN03218        753 NTITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWAL  832 (1060)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHH
Confidence            9999999999999999999999999999999999999999998865431    1                   2246799


Q ss_pred             HHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          553 KILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       553 ~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  631 (650)
                      .+|++|.+.|.. +..+|..++.++++.+....+..+++.+...+..++..+|+.+++++.+.  .++|..++++|.+.|
T Consensus       833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~~~G  910 (1060)
T PLN03218        833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAASLG  910 (1060)
T ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHHHHcC
Confidence            999999999987 88999999999999999999999999998777788999999999987432  468999999999999


Q ss_pred             CCChhhhh
Q 045674          632 YDRMGSIK  639 (650)
Q Consensus       632 ~~~~~~~~  639 (650)
                      +.|+...+
T Consensus       911 i~p~~~~~  918 (1060)
T PLN03218        911 VVPSVSFK  918 (1060)
T ss_pred             CCCCcccc
Confidence            99987643

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.7e-63  Score=532.39  Aligned_cols=492  Identities=18%  Similarity=0.268  Sum_probs=465.9

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKGF-LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFL  223 (650)
Q Consensus       145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  223 (650)
                      ++...|..+...+++.|++++|+++|++|.+.|+ +++...++.++..|.+.|..++|+.+|+.|..    ||..+|+.+
T Consensus       368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~L  443 (1060)
T PLN03218        368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNML  443 (1060)
T ss_pred             CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHH
Confidence            4567788899999999999999999999999885 56777888999999999999999999999864    899999999


Q ss_pred             HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 045674          224 MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDF  303 (650)
Q Consensus       224 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  303 (650)
                      +.+|++.|+++.|.++|+.|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++
T Consensus       444 L~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~  523 (1060)
T PLN03218        444 MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQV  523 (1060)
T ss_pred             HHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH--cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          304 DSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIR--RGCQPNVAIYTALIDSYAKLGSMNEAINIFE  381 (650)
Q Consensus       304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  381 (650)
                      ++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|..  .|+.||..+|+.++.+|++.|++++|.++|+
T Consensus       524 eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~  603 (1060)
T PLN03218        524 AKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQ  603 (1060)
T ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999987  5789999999999999999999999999999


Q ss_pred             HHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674          382 RMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD  461 (650)
Q Consensus       382 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  461 (650)
                      +|.+.|+.|+..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus       604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd  683 (1060)
T PLN03218        604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLG  683 (1060)
T ss_pred             HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.|+.+|++.|++++|.++|++|.+.|+.||..+|..++.+
T Consensus       684 ~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a  763 (1060)
T PLN03218        684 TVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVA  763 (1060)
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHH----c-------------------CCHHHHHHHHHHHHHcCC
Q 045674          542 LCLSGKVARACKILDELAPKGII-PETAFEDMITCLCK----T-------------------GRIKEACKLADGIVDRER  597 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~----~-------------------g~~~~A~~~~~~~~~~~~  597 (650)
                      |++.|++++|.+++++|.+.|.. +..+|+.++..+.+    .                   +..++|..+|++|.+.|+
T Consensus       764 ~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi  843 (1060)
T PLN03218        764 SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGT  843 (1060)
T ss_pred             HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCC
Confidence            99999999999999999999988 78888888755331    1                   234789999999999999


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674          598 EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKR  640 (650)
Q Consensus       598 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  640 (650)
                      .||..+|..++.++.+.+..+.+..+++.+...+..|+...++
T Consensus       844 ~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~  886 (1060)
T PLN03218        844 LPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLS  886 (1060)
T ss_pred             CCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhH
Confidence            9999999999988889999999999998888777777666554

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.5e-64  Score=553.07  Aligned_cols=541  Identities=19%  Similarity=0.227  Sum_probs=367.8

Q ss_pred             HHHHHHhcCCCchhhhHHHHHHhhcCC--CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Q 045674           82 RQILNLLDGSSDMEANLDSFCRKFLIK--LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLAL  159 (650)
Q Consensus        82 ~~~~~~l~~~~~~~~al~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~  159 (650)
                      ..+...+...+.+..++..+.++...+  .+...+..+++.+...+....|.+++..+.+.. ..++...++.++..|++
T Consensus        55 n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~n~li~~~~~  133 (857)
T PLN03077         55 NSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSH-PSLGVRLGNAMLSMFVR  133 (857)
T ss_pred             HHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcC-CCCCchHHHHHHHHHHh
Confidence            445555556677777776666554433  233334445555555555566666665554432 33444455555555555


Q ss_pred             cCChhHHHHHHHHH-------------------------------HHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH
Q 045674          160 CGDVDRVRLVFNEL-------------------------------KEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSM  208 (650)
Q Consensus       160 ~g~~~~A~~~~~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  208 (650)
                      .|+++.|+.+|++|                               ...|+.||..+|+.++.++...++++.+.+++..+
T Consensus       134 ~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~  213 (857)
T PLN03077        134 FGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHV  213 (857)
T ss_pred             CCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHH
Confidence            55555555555555                               44444444444444444444444444444444444


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHH
Q 045674          209 KENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKI  288 (650)
Q Consensus       209 ~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  288 (650)
                      .+.|+.||..+++.|+.+|++.|+++.|..+|++|.    .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..
T Consensus       214 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~  289 (857)
T PLN03077        214 VRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLM  289 (857)
T ss_pred             HHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChh
Confidence            444444455555666666666666667777776665    4566677777777777777777777777777777777777


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 045674          289 TYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYA  368 (650)
Q Consensus       289 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (650)
                      ||+.++.+|++.|+.+.+.+++..|.+.|..||..+|+.++.+|++.|++++|.++|++|..    ||..+|+.++.+|+
T Consensus       290 ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~~s~n~li~~~~  365 (857)
T PLN03077        290 TITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET----KDAVSWTAMISGYE  365 (857)
T ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC----CCeeeHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777776643    46666777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      +.|++++|+++|++|.+.|+.||..+|+.++.+|++.|++++|.++++.+.+.|+.++..+|+.|+.+|++.|++++|.+
T Consensus       366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~  445 (857)
T PLN03077        366 KNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALE  445 (857)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI  528 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  528 (650)
                      +|++|.+    +|..+|+.++.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+.+.+.+++..+.+.|+
T Consensus       446 vf~~m~~----~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~  520 (857)
T PLN03077        446 VFHNIPE----KDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGI  520 (857)
T ss_pred             HHHhCCC----CCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCC
Confidence            7776643    4566677777777777777777777777764 4667777777777777777777777777777777777


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          529 TPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALI  608 (650)
Q Consensus       529 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  608 (650)
                      .++..+++.++.+|.+.|++++|.++|+.+    ..+..+|+.++.+|++.|+.++|.++|++|.+.|+.||..+|..++
T Consensus       521 ~~~~~~~naLi~~y~k~G~~~~A~~~f~~~----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll  596 (857)
T PLN03077        521 GFDGFLPNALLDLYVRCGRMNYAWNQFNSH----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL  596 (857)
T ss_pred             CccceechHHHHHHHHcCCHHHHHHHHHhc----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence            777777777777888888888888888776    3477888999999999999999999999998888889999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHH-HCCCCChhhhhh
Q 045674          609 NALRKAGNADLAIKLMHSKI-GVGYDRMGSIKR  640 (650)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~  640 (650)
                      .+|.+.|++++|.++|++|. +.|..|+...|.
T Consensus       597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~  629 (857)
T PLN03077        597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYA  629 (857)
T ss_pred             HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHH
Confidence            99999999999999999998 578888755443

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.4e-62  Score=537.52  Aligned_cols=524  Identities=20%  Similarity=0.308  Sum_probs=409.3

Q ss_pred             hcCCCchhhhHHHHHHhhcCCCChH--HHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhH
Q 045674           88 LDGSSDMEANLDSFCRKFLIKLSPN--FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDR  165 (650)
Q Consensus        88 l~~~~~~~~al~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  165 (650)
                      +...+..+.+++.|.++...+..|+  .+..+++.+...+++..+.+++..+.+. ++.++..+++.++.+|++.|++++
T Consensus       162 ~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~-g~~~~~~~~n~Li~~y~k~g~~~~  240 (857)
T PLN03077        162 YAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRF-GFELDVDVVNALITMYVKCGDVVS  240 (857)
T ss_pred             HHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHc-CCCcccchHhHHHHHHhcCCCHHH
Confidence            3345555666665555543333333  3334555555555566666666555543 356677778888889999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhc
Q 045674          166 VRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMEN  245 (650)
Q Consensus       166 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~  245 (650)
                      |..+|++|.+    +|..+|+.++.+|++.|++++|+++|++|...|+.||..+|+.++.++.+.|+.+.|.+++..+.+
T Consensus       241 A~~lf~~m~~----~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~  316 (857)
T PLN03077        241 ARLVFDRMPR----RDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK  316 (857)
T ss_pred             HHHHHhcCCC----CCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence            9999998864    477889999999999999999999999999999999999999999999999999999999999998


Q ss_pred             CCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674          246 GKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAY  325 (650)
Q Consensus       246 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~  325 (650)
                      .|+.||..+|+.|+.+|++.|++++|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|.+.|+.||..+|
T Consensus       317 ~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~----~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~  392 (857)
T PLN03077        317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITI  392 (857)
T ss_pred             hCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC----CCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeH
Confidence            8889999999999999999999999999999885    467888999999999999999999999999988888999999


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674          326 NLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKN  405 (650)
Q Consensus       326 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  405 (650)
                      +.++.+|++.|++++|.++++.+.+.|+.|+..+|+.|+.+|++.|++++|.++|++|.+    +|..+|+.++.+|++.
T Consensus       393 ~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~~~mi~~~~~~  468 (857)
T PLN03077        393 ASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISWTSIIAGLRLN  468 (857)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHC
Confidence            999999999999999999999999999989999999999999999999999999988874    5777888888888888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF  485 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (650)
                      |+.++|+.+|++|.. +..||..+|+.++.+|++.|+++.+.+++..+.+.|+.+|..+++.|+.+|++.|++++|.++|
T Consensus       469 g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f  547 (857)
T PLN03077        469 NRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQF  547 (857)
T ss_pred             CCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHH
Confidence            888888888888875 4778888888888888888888888888888887777777777777777777777777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh-hCCCC
Q 045674          486 KRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA-PKGII  564 (650)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~  564 (650)
                      +.+     .+|..+||.++.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|. +.+..
T Consensus       548 ~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~  622 (857)
T PLN03077        548 NSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSIT  622 (857)
T ss_pred             Hhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCC
Confidence            665     357777777777777777777777777777777777777777777777777777777777777776 44444


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          565 -PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       565 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                       +..+|..++.+|++.|++++|.+++++|.   +.||..+|..|+.+|..+|+.+.|....+++++..+.
T Consensus       623 P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~  689 (857)
T PLN03077        623 PNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPN  689 (857)
T ss_pred             CchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCC
Confidence             55677777777777777777777777663   4566666666666666666666666666666655444

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.4e-61  Score=514.04  Aligned_cols=509  Identities=17%  Similarity=0.234  Sum_probs=457.9

Q ss_pred             HHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          114 VSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG  193 (650)
Q Consensus       114 ~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (650)
                      +..++..+...|++++|+++|.|+....++.++..+|+.++.++++.++++.|..++..+.+.|+.++..+++.|+..|+
T Consensus        90 ~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~  169 (697)
T PLN03081         90 LCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHV  169 (697)
T ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHh
Confidence            44456666678899999999999988766788999999999999999999999999999999999999999999999999


Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 045674          194 GLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAME  273 (650)
Q Consensus       194 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  273 (650)
                      +.|++++|.++|++|.    .||..+|+.++.+|++.|++++|.++|++|.+.|+.|+..+|+.++.++++.|..+.+.+
T Consensus       170 k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~  245 (697)
T PLN03081        170 KCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQ  245 (697)
T ss_pred             cCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHH
Confidence            9999999999999995    478999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC
Q 045674          274 KFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC  353 (650)
Q Consensus       274 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  353 (650)
                      ++..+.+.|+.+|..+++.|+.+|++.|++++|.++|++|..    +|..+|+.++.+|++.|+.++|.++|++|.+.|+
T Consensus       246 l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~  321 (697)
T PLN03081        246 LHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV  321 (697)
T ss_pred             HHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence            999999999999999999999999999999999999999864    4888999999999999999999999999999999


Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          354 QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL  433 (650)
Q Consensus       354 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  433 (650)
                      .||..+|+.++.+|++.|++++|.+++..|.+.|+.||..+++.++.+|++.|++++|.++|++|.+    +|..+|+.+
T Consensus       322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~l  397 (697)
T PLN03081        322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNAL  397 (697)
T ss_pred             CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999999999864    588899999


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCC
Q 045674          434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED-EGCDQTVYTYTILINGMFKEHR  512 (650)
Q Consensus       434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~  512 (650)
                      |.+|++.|+.++|.++|++|.+.|+.||..+|+.++.+|.+.|.+++|.++|+.|.+ .|+.|+..+|+.++.+|++.|+
T Consensus       398 I~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~  477 (697)
T PLN03081        398 IAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGL  477 (697)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCC
Confidence            999999999999999999999999999999999999999999999999999999976 5899999999999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      +++|.+++++|   +..|+..+|+.++.+|...|+++.|..+++++.+.+|.+...|..++.+|++.|++++|.++++.|
T Consensus       478 ~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m  554 (697)
T PLN03081        478 LDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETL  554 (697)
T ss_pred             HHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHH
Confidence            99999998765   578999999999999999999999999999999888888889999999999999999999999999


Q ss_pred             HHcCCCCCH-HHHHHHH-------HHHH----hcCCHHHHHHHHHHHHHCCCCChhh
Q 045674          593 VDREREIPG-KIRTALI-------NALR----KAGNADLAIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       593 ~~~~~~~~~-~~~~~l~-------~~~~----~~g~~~~A~~~~~~~~~~~~~~~~~  637 (650)
                      .+.|+...+ ..|..+.       ..-.    ...-++...++..++.+.|+.|+..
T Consensus       555 ~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~l~~l~~~~~~~gy~~~~~  611 (697)
T PLN03081        555 KRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQKLDELMKEISEYGYVAEEN  611 (697)
T ss_pred             HHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHHHHHHHHHHHHcCCCCCcc
Confidence            998865432 2221110       0000    0112455667888888899988743

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=7.3e-61  Score=511.44  Aligned_cols=473  Identities=19%  Similarity=0.273  Sum_probs=451.5

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKG-FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLM  224 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  224 (650)
                      +...|+.++..|.+.|++++|..+|+.|...+ +.++..+|+.++.++.+.++.+.+.+++..|.+.|+.||..+|+.++
T Consensus        86 ~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li  165 (697)
T PLN03081         86 SGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVL  165 (697)
T ss_pred             CceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHH
Confidence            34568889999999999999999999998764 67899999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          225 NGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD  304 (650)
Q Consensus       225 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  304 (650)
                      ..|++.|+++.|.++|++|.    .||..+|+.++.+|++.|++++|+++|++|.+.|+.|+..+|..++.+|...|+.+
T Consensus       166 ~~y~k~g~~~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~  241 (697)
T PLN03081        166 LMHVKCGMLIDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR  241 (697)
T ss_pred             HHHhcCCCHHHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence            99999999999999999997    58999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK  384 (650)
Q Consensus       305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  384 (650)
                      .+.+++..+.+.|..++..+++.|+.+|++.|++++|.++|++|..    +|..+|+.|+.+|++.|++++|+++|++|.
T Consensus       242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~  317 (697)
T PLN03081        242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMR  317 (697)
T ss_pred             HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999965    499999999999999999999999999999


Q ss_pred             HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674          385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC  464 (650)
Q Consensus       385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  464 (650)
                      +.|+.||..||+.++.+|++.|++++|.+++..|.+.|+.++..+|+.++.+|++.|++++|.++|++|.+    +|..+
T Consensus       318 ~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t  393 (697)
T PLN03081        318 DSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLIS  393 (697)
T ss_pred             HcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeee
Confidence            99999999999999999999999999999999999999999999999999999999999999999999864    68899


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID-KGITPTAASFRALSIGLC  543 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~  543 (650)
                      |+.++.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|.+.|+.++|.++|+.|.+ .|+.|+..+|+.++.+|+
T Consensus       394 ~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~  473 (697)
T PLN03081        394 WNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG  473 (697)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999999999985 699999999999999999


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  623 (650)
                      +.|++++|.++++++..  ..+..+|+.++.++...|+++.|..+++++.+.+ +.+..+|..+++.|.+.|++++|.++
T Consensus       474 r~G~~~eA~~~~~~~~~--~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~-p~~~~~y~~L~~~y~~~G~~~~A~~v  550 (697)
T PLN03081        474 REGLLDEAYAMIRRAPF--KPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG-PEKLNNYVVLLNLYNSSGRQAEAAKV  550 (697)
T ss_pred             hcCCHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCC-CCCCcchHHHHHHHHhCCCHHHHHHH
Confidence            99999999999987631  2377889999999999999999999999998765 55678999999999999999999999


Q ss_pred             HHHHHHCCCC
Q 045674          624 MHSKIGVGYD  633 (650)
Q Consensus       624 ~~~~~~~~~~  633 (650)
                      +++|.++|..
T Consensus       551 ~~~m~~~g~~  560 (697)
T PLN03081        551 VETLKRKGLS  560 (697)
T ss_pred             HHHHHHcCCc
Confidence            9999999986

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2.7e-34  Score=323.30  Aligned_cols=531  Identities=11%  Similarity=0.055  Sum_probs=355.1

Q ss_pred             CCCchhhhHHHHHHhhcCC-CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674           90 GSSDMEANLDSFCRKFLIK-LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL  168 (650)
Q Consensus        90 ~~~~~~~al~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  168 (650)
                      ..++.+.++..+....... .++.....+...+...|++++|.++|..+...  .+.+...+..++..+...|++++|..
T Consensus       341 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~  418 (899)
T TIGR02917       341 RLGRVDEAIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATEL--DPENAAARTQLGISKLSQGDPSEAIA  418 (899)
T ss_pred             HCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHhCCChHHHHH
Confidence            3444555554444332222 12233333333444456666666666655543  23345555566666666666666666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 045674          169 VFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKV  248 (650)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~  248 (650)
                      .++++.+.. +........++..+.+.|++++|..+++++... .+.+..++..+...+...|++++|...|+++.+.. 
T Consensus       419 ~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-  495 (899)
T TIGR02917       419 DLETAAQLD-PELGRADLLLILSYLRSGQFDKALAAAKKLEKK-QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-  495 (899)
T ss_pred             HHHHHHhhC-CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-
Confidence            666665543 223344445555666666666666666666554 23355666667777777777777777777766543 


Q ss_pred             CCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          249 GPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLV  328 (650)
Q Consensus       249 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  328 (650)
                      +.+...+..++..+...|++++|.+.++++...+ +.+..++..+...+...|++++|...++++...+. .+...+..+
T Consensus       496 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l  573 (899)
T TIGR02917       496 PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNP-QEIEPALAL  573 (899)
T ss_pred             CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchhHHHHH
Confidence            3345566666677777777777777777776654 33556666677777777777777777777766542 345566667


Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 045674          329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL  408 (650)
Q Consensus       329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  408 (650)
                      +..+...|++++|..+++.+.+.. +.+...|..++.+|...|++++|+..|+++.+.. ..+...+..+...+...|++
T Consensus       574 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~  651 (899)
T TIGR02917       574 AQYYLGKGQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNY  651 (899)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCH
Confidence            777777777777777777776642 3356677777777777777777777777776543 22455666777777777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      ++|...++++.+..+. +...+..++..+...|++++|..+++.+.+.+ +.+...+..++..+...|++++|.+.|+++
T Consensus       652 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~  729 (899)
T TIGR02917       652 AKAITSLKRALELKPD-NTEAQIGLAQLLLAAKRTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKA  729 (899)
T ss_pred             HHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            7777777777766544 56667777777777777777777777777764 566677777777777788888888888777


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHH
Q 045674          489 EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETA  568 (650)
Q Consensus       489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  568 (650)
                      ...++  +..++..++.++...|++++|.+.++++.+..+. +...+..++..|...|++++|..+|+++.+.+|.+..+
T Consensus       730 ~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  806 (899)
T TIGR02917       730 LKRAP--SSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVV  806 (899)
T ss_pred             HhhCC--CchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHH
Confidence            77643  3355666777777788888888888777766443 66777777777888888888888888888777777777


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      +..++.++...|+ .+|+.+++++++.. +.++.++..++.++...|++++|.+.++++++.++....
T Consensus       807 ~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~  872 (899)
T TIGR02917       807 LNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPEAAA  872 (899)
T ss_pred             HHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCChH
Confidence            8888888888888 77888888887764 556677777888888888888888888888887776333

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=100.00  E-value=2e-34  Score=324.45  Aligned_cols=530  Identities=14%  Similarity=0.064  Sum_probs=460.8

Q ss_pred             HHHHhcCCCchhhhHHHHHHhhcCCCC-hHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC
Q 045674           84 ILNLLDGSSDMEANLDSFCRKFLIKLS-PNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGD  162 (650)
Q Consensus        84 ~~~~l~~~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  162 (650)
                      +...+...++++.++..+.+....... +.........+...|+++.|+..|..+....  +........++..+.+.|+
T Consensus       369 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~  446 (899)
T TIGR02917       369 LGEAYLALGDFEKAAEYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLD--PELGRADLLLILSYLRSGQ  446 (899)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhC--CcchhhHHHHHHHHHhcCC
Confidence            333444678888888888776544332 3333344455567899999999999887653  3345667778899999999


Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 045674          163 VDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKV  242 (650)
Q Consensus       163 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~  242 (650)
                      +++|..+++.+.... +.+...+..++..|...|++++|.+.|+++.+.. +.+...+..+...+...|++++|...++.
T Consensus       447 ~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~  524 (899)
T TIGR02917       447 FDKALAAAKKLEKKQ-PDNASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQEGNPDDAIQRFEK  524 (899)
T ss_pred             HHHHHHHHHHHHHhC-CCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            999999999998764 6678899999999999999999999999998864 34667788888999999999999999999


Q ss_pred             HhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          243 MENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS  322 (650)
Q Consensus       243 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~  322 (650)
                      +.... +.+..++..+...+.+.|+.++|..+++++...+ +.+...+..++..+...|++++|..+++.+.... +.+.
T Consensus       525 ~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~  601 (899)
T TIGR02917       525 VLTID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA-PDSP  601 (899)
T ss_pred             HHHhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCH
Confidence            98765 4578899999999999999999999999998775 4467788889999999999999999999998764 4477


Q ss_pred             HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 045674          323 HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGL  402 (650)
Q Consensus       323 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  402 (650)
                      ..+..++.++...|++++|...|+.+.+.. +.+...+..++.++...|++++|..+|+++.+.. ..+..++..++..+
T Consensus       602 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  679 (899)
T TIGR02917       602 EAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLL  679 (899)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            899999999999999999999999998864 3367788889999999999999999999998763 23577899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674          403 CKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL  482 (650)
Q Consensus       403 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  482 (650)
                      ...|++++|.++++.+.+.++. +...+..++..+...|++++|.+.|+.+...+  |+..++..++.++.+.|++++|.
T Consensus       680 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~  756 (899)
T TIGR02917       680 LAAKRTESAKKIAKSLQKQHPK-AALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAV  756 (899)
T ss_pred             HHcCCHHHHHHHHHHHHhhCcC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999988755 77788889999999999999999999999975  55578888999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674          483 ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG  562 (650)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  562 (650)
                      +.++++.+..+. +...+..++..|...|++++|..+|+++.+..+. +...+..+++.+...|+ .+|+.+++++.+..
T Consensus       757 ~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~  833 (899)
T TIGR02917       757 KTLEAWLKTHPN-DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPD-NAVVLNNLAWLYLELKD-PRALEYAEKALKLA  833 (899)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC
Confidence            999999987554 8889999999999999999999999999987654 78889999999999999 88999999999998


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      +.++..+..++.++...|++++|.++++++++.+ +.+..++..++.++.+.|++++|+++++++++
T Consensus       834 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  899 (899)
T TIGR02917       834 PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIA-PEAAAIRYHLALALLATGRKAEARKELDKLLN  899 (899)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence            8899999999999999999999999999999987 66899999999999999999999999999874

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.2e-27  Score=268.68  Aligned_cols=539  Identities=12%  Similarity=0.032  Sum_probs=356.0

Q ss_pred             hHHHHHHHhcCCCchhhhHHHHHHhhcCC-CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHH---------
Q 045674           80 WVRQILNLLDGSSDMEANLDSFCRKFLIK-LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLEC---------  149 (650)
Q Consensus        80 ~~~~~~~~l~~~~~~~~al~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~---------  149 (650)
                      |+-.-..+-...++.+.+.+.+.+...+. -+|+.+....+.+...|+.++|.+.++.+.+..  |.+...         
T Consensus        30 ~Ll~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~  107 (1157)
T PRK11447         30 QLLEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLL  107 (1157)
T ss_pred             HHHHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHh
Confidence            33333444445677777777777665444 357778778888888999999999999776653  233332         


Q ss_pred             -------HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674          150 -------YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSA-ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYN  221 (650)
Q Consensus       150 -------~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  221 (650)
                             ....+..+.+.|++++|.+.|+.+.+.+ +++... ...+.......|+.++|++.++++.+.. +.+...+.
T Consensus       108 ~~~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~  185 (1157)
T PRK11447        108 STPEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRN  185 (1157)
T ss_pred             cCCchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHH
Confidence                   2345667889999999999999998764 444332 1112222234689999999999999874 33677788


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHhcCCC------------------C--------------CChhhH--------------
Q 045674          222 FLMNGLVNSMFIESSELVFKVMENGKV------------------G--------------PDVVTY--------------  255 (650)
Q Consensus       222 ~ll~~~~~~~~~~~A~~~~~~~~~~~~------------------~--------------~~~~~~--------------  255 (650)
                      .+...+...|+.++|+..++++.....                  .              |+....              
T Consensus       186 ~LA~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~  265 (1157)
T PRK11447        186 TLALLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL  265 (1157)
T ss_pred             HHHHHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc
Confidence            888889999999999999988754310                  0              000000              


Q ss_pred             -------HHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-HHH--
Q 045674          256 -------NTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS-HAY--  325 (650)
Q Consensus       256 -------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~--  325 (650)
                             ......+...|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++..+....... ..+  
T Consensus       266 ~dp~~~~~~~G~~~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~  344 (1157)
T PRK11447        266 ADPAFRARAQGLAAVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWES  344 (1157)
T ss_pred             cCcchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHH
Confidence                   012345667799999999999998864 336788888999999999999999999998876433211 111  


Q ss_pred             ----------HHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH
Q 045674          326 ----------NLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY  395 (650)
Q Consensus       326 ----------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~  395 (650)
                                ......+.+.|++++|+..|+++++.. +.+...+..+..++...|++++|++.|+++.+.... +...+
T Consensus       345 ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~  422 (1157)
T PRK11447        345 LLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPG-NTNAV  422 (1157)
T ss_pred             HHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHH
Confidence                      223456778899999999999999873 235667777889999999999999999998865211 23334


Q ss_pred             HHHHHHH------------------------------------------HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          396 GVIISGL------------------------------------------CKNERLEEAMQYFEFCRANGVAVNAMFYSSL  433 (650)
Q Consensus       396 ~~l~~~~------------------------------------------~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  433 (650)
                      ..+...+                                          ...|++++|++.|+++.+..+. +...+..+
T Consensus       423 ~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~L  501 (1157)
T PRK11447        423 RGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRL  501 (1157)
T ss_pred             HHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            3333333                                          3344555555555555444333 33444444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---------HHHHHH
Q 045674          434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVY---------TYTILI  504 (650)
Q Consensus       434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---------~~~~l~  504 (650)
                      ...|.+.|++++|...++++++.. +.+...+..+...+...++.++|+..++.+......++..         .+..+.
T Consensus       502 A~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a  580 (1157)
T PRK11447        502 AQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA  580 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence            555555555555555555554432 3334444444434444444444444444432211111110         111233


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674          505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE  584 (650)
Q Consensus       505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  584 (650)
                      ..+...|++++|..+++.     ...+...+..++..+.+.|++++|++.|+++++..|.+..++..++.++...|++++
T Consensus       581 ~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~e  655 (1157)
T PRK11447        581 NRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAA  655 (1157)
T ss_pred             HHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHH
Confidence            445556666666666551     123555667788888888999999999999988888888888888999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       585 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      |++.++++++.. +.+..++..++.++...|++++|+++++++++..+.
T Consensus       656 A~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~  703 (1157)
T PRK11447        656 ARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS  703 (1157)
T ss_pred             HHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence            999998888764 556677778888888889999999999988887654

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=100.00  E-value=1.2e-26  Score=260.60  Aligned_cols=529  Identities=10%  Similarity=-0.013  Sum_probs=377.8

Q ss_pred             HhcCCCchhhhHHHHHHhhcCCCCh-HHHHHH-HHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChh
Q 045674           87 LLDGSSDMEANLDSFCRKFLIKLSP-NFVSFV-LRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVD  164 (650)
Q Consensus        87 ~l~~~~~~~~al~~~~~~~~~~~~~-~~~~~~-l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  164 (650)
                      ++...++++.|+..|...+...... ...... .......+++++|++.++.+...  .|.+...+..++.++...|+++
T Consensus       121 ll~~~g~~~eA~~~~~~~l~~~p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~--~P~~~~~~~~LA~ll~~~g~~~  198 (1157)
T PRK11447        121 LLATTGRTEEALASYDKLFNGAPPELDLAVEYWRLVAKLPAQRPEAINQLQRLNAD--YPGNTGLRNTLALLLFSSGRRD  198 (1157)
T ss_pred             HHHhCCCHHHHHHHHHHHccCCCCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHccCCHH
Confidence            4556889999999888776543332 222222 22234568999999999988776  4567888999999999999999


Q ss_pred             HHHHHHHHHHHCCCC----------------CC---HHHHH----------------------------------HHHHH
Q 045674          165 RVRLVFNELKEKGFL----------------MT---VSAAN----------------------------------SLIKS  191 (650)
Q Consensus       165 ~A~~~~~~~~~~~~~----------------~~---~~~~~----------------------------------~l~~~  191 (650)
                      +|+..++++.+....                .+   ...+.                                  .+...
T Consensus       199 eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~~~~~~~G~~  278 (1157)
T PRK11447        199 EGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPAFRARAQGLA  278 (1157)
T ss_pred             HHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcchHHHHHHHH
Confidence            999999988653210                00   00000                                  11334


Q ss_pred             HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC-ChhhH------------HHH
Q 045674          192 FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP-DVVTY------------NTM  258 (650)
Q Consensus       192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~-~~~~~------------~~l  258 (650)
                      +...|++++|+..|++..+.. +.+...+..+...+.+.|++++|+..|++..+..... ....|            ...
T Consensus       279 ~~~~g~~~~A~~~l~~aL~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~  357 (1157)
T PRK11447        279 AVDSGQGGKAIPELQQAVRAN-PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQ  357 (1157)
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHH
Confidence            456677777777777777653 2256666777777777777777777777776542111 11111            112


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674          259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC  338 (650)
Q Consensus       259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  338 (650)
                      ...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|++..+... .+...+..+...+. .++.
T Consensus       358 g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p-~~~~a~~~L~~l~~-~~~~  434 (1157)
T PRK11447        358 GDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDP-GNTNAVRGLANLYR-QQSP  434 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH-hcCH
Confidence            345566777777777777777653 23455666667777777777777777777776532 24445555555553 3456


Q ss_pred             HHHHHHHHHHHHcCCC--------cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 045674          339 IEGHAIFESMIRRGCQ--------PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE  410 (650)
Q Consensus       339 ~~a~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  410 (650)
                      ++|..+++.+......        .....+..++..+...|++++|+..|++..+.... +...+..+...|.+.|++++
T Consensus       435 ~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~  513 (1157)
T PRK11447        435 EKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQ  513 (1157)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHH
Confidence            7777666554322100        01123445667788899999999999999886322 45677788889999999999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---------HHHHHHHHHHHHcCCHHHH
Q 045674          411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---------YCYNVLIDALAKCGKLDEA  481 (650)
Q Consensus       411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---------~~~~~l~~~~~~~g~~~~A  481 (650)
                      |...++++.+..+. +...+..+...+...++.++|+..++.+......++.         ..+..++..+...|++++|
T Consensus       514 A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA  592 (1157)
T PRK11447        514 ADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEA  592 (1157)
T ss_pred             HHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHH
Confidence            99999999887655 5555555666678899999999999876543222222         1233567778899999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      +++++.     .+.+...+..+...+...|++++|+..|+++++..+. +...+..++..+...|++++|++.++.+.+.
T Consensus       593 ~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~  666 (1157)
T PRK11447        593 EALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPAT  666 (1157)
T ss_pred             HHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc
Confidence            999872     2346667788899999999999999999999987655 7888999999999999999999999999998


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-----PGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .+.+...+..++.++...|++++|.+++++++......     +..++..++..+...|++++|+..|++++.
T Consensus       667 ~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~  739 (1157)
T PRK11447        667 ANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMV  739 (1157)
T ss_pred             CCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            88888889999999999999999999999998764111     224666778999999999999999999985

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=1.8e-26  Score=218.41  Aligned_cols=448  Identities=15%  Similarity=0.115  Sum_probs=358.8

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674          150 YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN  229 (650)
Q Consensus       150 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (650)
                      ...++.-+.+.|++.+|++....+-..+ +.+......+-..+.+..+.+.....-....+. .+.-..+|..+.+.+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~-~~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRK-NPQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhc-cchHHHHHHHHHHHHHH
Confidence            4456666778888888888877665543 444555555556666666777665554444443 23356788888888888


Q ss_pred             cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH-HHHHHHHHhcCCHHHHHH
Q 045674          230 SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITY-MTLIQACYLEGDFDSCLS  308 (650)
Q Consensus       230 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~a~~  308 (650)
                      .|+++.|...++.+++.. +..+..|..+..++...|+.+.|.+.|...++.  .|+.... ..+...+-..|+.++|..
T Consensus       129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~  205 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKA  205 (966)
T ss_pred             hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHH
Confidence            899999999998888764 345788888888999999999999888888775  4554433 345555566888888888


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          309 LYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEG  387 (650)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  387 (650)
                      .|.+.++... --...|..|...+...|+...|+..|++.+..  .|+ ...|..|...|...+.+++|+..|.+.... 
T Consensus       206 cYlkAi~~qp-~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l-  281 (966)
T KOG4626|consen  206 CYLKAIETQP-CFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL-  281 (966)
T ss_pred             HHHHHHhhCC-ceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc-
Confidence            8888877632 24567888888888999999999999998876  444 457888999999999999999999988765 


Q ss_pred             CCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          388 VEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN  466 (650)
Q Consensus       388 ~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  466 (650)
                       .|+ ...+..+...|..+|.++-|++.|++.++..+. -...|+.|..++-..|++.+|...+.+.+... +......+
T Consensus       282 -rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~-p~hadam~  358 (966)
T KOG4626|consen  282 -RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLC-PNHADAMN  358 (966)
T ss_pred             -CCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhC-CccHHHHH
Confidence             444 567888888899999999999999999988665 56789999999999999999999999999874 66788899


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhc
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT-AASFRALSIGLCLS  545 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~  545 (650)
                      .|+..|...|.+++|..+|....+-.+. -...++.|...|-..|++++|+..++++++  +.|+ ...++.++..|-..
T Consensus       359 NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~Ykealr--I~P~fAda~~NmGnt~ke~  435 (966)
T KOG4626|consen  359 NLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALR--IKPTFADALSNMGNTYKEM  435 (966)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHh--cCchHHHHHHhcchHHHHh
Confidence            9999999999999999999999886433 456788899999999999999999999987  4555 45889999999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK  613 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (650)
                      |+.+.|...+.+++..+|.-.+++..|+.++...|+..+|+.-|+.+++.. |..+.++..++.++--
T Consensus       436 g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklk-PDfpdA~cNllh~lq~  502 (966)
T KOG4626|consen  436 GDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLK-PDFPDAYCNLLHCLQI  502 (966)
T ss_pred             hhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccC-CCCchhhhHHHHHHHH
Confidence            999999999999999988888999999999999999999999999999886 5556777777666433

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.97  E-value=3e-27  Score=223.64  Aligned_cols=447  Identities=15%  Similarity=0.084  Sum_probs=375.6

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 045674          185 ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK  264 (650)
Q Consensus       185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  264 (650)
                      ...|.....+.|++.+|.+.-...-..+ +.+......+-..+.+..+++.....-...++.. +--..+|..+...+-.
T Consensus        51 ~l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~-~q~ae~ysn~aN~~ke  128 (966)
T KOG4626|consen   51 RLELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN-PQGAEAYSNLANILKE  128 (966)
T ss_pred             HHHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc-chHHHHHHHHHHHHHH
Confidence            5567777788999999998777665543 2344444445566677777776555444444332 3457899999999999


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 045674          265 VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAI  344 (650)
Q Consensus       265 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  344 (650)
                      .|++++|+.+++.+.+.. +-....|..+..++...|+.+.|.+.|.+.++.++. .......+...+-..|++.+|...
T Consensus       129 rg~~~~al~~y~~aiel~-p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~-l~ca~s~lgnLlka~Grl~ea~~c  206 (966)
T KOG4626|consen  129 RGQLQDALALYRAAIELK-PKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPD-LYCARSDLGNLLKAEGRLEEAKAC  206 (966)
T ss_pred             hchHHHHHHHHHHHHhcC-chhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcc-hhhhhcchhHHHHhhcccchhHHH
Confidence            999999999999999874 226789999999999999999999999998886422 233444566667778999999999


Q ss_pred             HHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          345 FESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANG  422 (650)
Q Consensus       345 ~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  422 (650)
                      +.+.++.  .|. ...|..|...+...|+.-.|+..|++..+.  .|+ ...|..+...|...+.++.|+..|.+.....
T Consensus       207 YlkAi~~--qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr  282 (966)
T KOG4626|consen  207 YLKAIET--QPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR  282 (966)
T ss_pred             HHHHHhh--CCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC
Confidence            9999886  333 457889999999999999999999999875  454 5688899999999999999999999988876


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          423 VAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI  502 (650)
Q Consensus       423 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  502 (650)
                      +. ....+..+...|...|.+|-|+..+++.++.. |.-...|+.|..++...|+..+|++.+.+.+...+. .....+.
T Consensus       283 pn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~-hadam~N  359 (966)
T KOG4626|consen  283 PN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNKALRLCPN-HADAMNN  359 (966)
T ss_pred             Cc-chhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHHHHHhCCc-cHHHHHH
Confidence            55 67778889999999999999999999999985 566789999999999999999999999999987443 6778899


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI  582 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  582 (650)
                      |+..+...|.+++|..+|.+..+-.+. -...++.|+..|-.+|++++|+..|++++...|.-.+.+..++..|-..|+.
T Consensus       360 Lgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v  438 (966)
T KOG4626|consen  360 LGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDV  438 (966)
T ss_pred             HHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhH
Confidence            999999999999999999999985433 4567889999999999999999999999999888899999999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-Chhhhhhhhcc
Q 045674          583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD-RMGSIKRRVKF  644 (650)
Q Consensus       583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~  644 (650)
                      +.|+..|.+++..+ |.-.++...|+..|...|+..+|++.|+++++..|+ |+.-++.+...
T Consensus       439 ~~A~q~y~rAI~~n-Pt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l  500 (966)
T KOG4626|consen  439 SAAIQCYTRAIQIN-PTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL  500 (966)
T ss_pred             HHHHHHHHHHHhcC-cHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence            99999999999876 666889999999999999999999999999999998 77777766543

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.96  E-value=3.4e-23  Score=221.75  Aligned_cols=519  Identities=9%  Similarity=-0.018  Sum_probs=361.0

Q ss_pred             CCCchhhhHHHHHHhhcCCCC-hHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674           90 GSSDMEANLDSFCRKFLIKLS-PNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL  168 (650)
Q Consensus        90 ~~~~~~~al~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  168 (650)
                      ..|+++.+++.|.+.....++ +.....+.+.+...|++++|+..++.+.+..  +.+...+..++.+    +++++|..
T Consensus        56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i----~~~~kA~~  129 (987)
T PRK09782         56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI----PVEVKSVT  129 (987)
T ss_pred             hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh----ccChhHHH
Confidence            468889999999887755554 3444445577788999999999999888753  3455555544333    89999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHH--------HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHhcCChhHHHHH
Q 045674          169 VFNELKEKGFLMTVSAANSLIKS--------FGGLGMVEELLWVWRSMKENGIEPSLYTYNFL-MNGLVNSMFIESSELV  239 (650)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~A~~~  239 (650)
                      +++++.+.. |-+..++..+...        |.+.++..+++   + .......|+..+.... ...|...+++++|+.+
T Consensus       130 ~ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL---~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~l  204 (987)
T PRK09782        130 TVEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQL---N-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTL  204 (987)
T ss_pred             HHHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHH---H-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHH
Confidence            999999875 5567777666666        66654444444   4 3333334445544444 8889999999999999


Q ss_pred             HHHHhcCCCCCChhhHHHHHHHHHH-cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          240 FKVMENGKVGPDVVTYNTMIKGYCK-VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI  318 (650)
Q Consensus       240 ~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~  318 (650)
                      +.++.+.+ +.+......|...|.. .++ +++..+++..    ++-+...+..++..+.+.|+.++|.++++++.....
T Consensus       205 L~~L~k~~-pl~~~~~~~L~~ay~q~l~~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~  278 (987)
T PRK09782        205 YNEARQQN-TLSAAERRQWFDVLLAGQLD-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFT  278 (987)
T ss_pred             HHHHHhcC-CCCHHHHHHHHHHHHHhhCH-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCccccc
Confidence            99999876 4456667777778887 366 7777775532    235778888888999999999999888887654311


Q ss_pred             C-CCHHH------------------------------HHHHHHHHHhcCChH----------------------------
Q 045674          319 E-IPSHA------------------------------YNLVIGGLCKVGKCI----------------------------  339 (650)
Q Consensus       319 ~-~~~~~------------------------------~~~l~~~~~~~g~~~----------------------------  339 (650)
                      . |....                              ...++..+.+.++++                            
T Consensus       279 ~~~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  358 (987)
T PRK09782        279 TDAQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNK  358 (987)
T ss_pred             CCCccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCch
Confidence            1 11000                              011133333333333                            


Q ss_pred             -----------------------------------HHHHHHHHHHHc-C-CCcCHHHHHHHHHHHHhcCC---HHHHHHH
Q 045674          340 -----------------------------------EGHAIFESMIRR-G-CQPNVAIYTALIDSYAKLGS---MNEAINI  379 (650)
Q Consensus       340 -----------------------------------~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~~~---~~~A~~~  379 (650)
                                                         +|.++|+..... + ...+.....-++..|.+.+.   ..++..+
T Consensus       359 ~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l  438 (987)
T PRK09782        359 AEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAIL  438 (987)
T ss_pred             hHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHh
Confidence                                               333333333331 0 01112222233444444333   2222111


Q ss_pred             ----------------------HHHHHHC-CC-CC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          380 ----------------------FERMKYE-GV-EP--DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL  433 (650)
Q Consensus       380 ----------------------~~~~~~~-~~-~p--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  433 (650)
                                            +...... +. .+  +...|..+..++.. ++.++|+..+.+.....+  +......+
T Consensus       439 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~P--d~~~~L~l  515 (987)
T PRK09782        439 SKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQP--DAWQHRAV  515 (987)
T ss_pred             ccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCC--chHHHHHH
Confidence                                  1111100 11 11  34455555555554 777788887777766543  43344445


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674          434 IDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRN  513 (650)
Q Consensus       434 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  513 (650)
                      +..+...|++++|...|+++...  +++...+..++..+.+.|++++|...+++.++..+. +...+..+...+...|++
T Consensus       516 A~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~  592 (987)
T PRK09782        516 AYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQP  592 (987)
T ss_pred             HHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCH
Confidence            55667899999999999998665  455566778888899999999999999999887533 333344444445566999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      ++|...++++++.  .|+...+..++.++.+.|++++|...+++++...|.+..++..++.++...|++++|++.+++++
T Consensus       593 ~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL  670 (987)
T PRK09782        593 ELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAH  670 (987)
T ss_pred             HHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            9999999999986  45688899999999999999999999999999999999999999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          594 DREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       594 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      +.. |.+..++..++.++...|++++|+..++++++..+..
T Consensus       671 ~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~  710 (987)
T PRK09782        671 KGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQ  710 (987)
T ss_pred             HhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCC
Confidence            986 7789999999999999999999999999999988753

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.95  E-value=1.3e-22  Score=202.63  Aligned_cols=510  Identities=14%  Similarity=0.102  Sum_probs=300.5

Q ss_pred             CCCChhHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC---CCH
Q 045674          123 VSKRPNVGLRLFTWAARQ-KKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGL---GMV  198 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~  198 (650)
                      ..+++..|+.+|..+... +...++  ....++.++++.|+.+.|+..|+++++.+ |.++.++..|...-...   ..+
T Consensus       176 nkkdY~~al~yyk~al~inp~~~aD--~rIgig~Cf~kl~~~~~a~~a~~ralqLd-p~~v~alv~L~~~~l~~~d~~s~  252 (1018)
T KOG2002|consen  176 NKKDYRGALKYYKKALRINPACKAD--VRIGIGHCFWKLGMSEKALLAFERALQLD-PTCVSALVALGEVDLNFNDSDSY  252 (1018)
T ss_pred             ccccHHHHHHHHHHHHhcCcccCCC--ccchhhhHHHhccchhhHHHHHHHHHhcC-hhhHHHHHHHHHHHHHccchHHH
Confidence            346777788887765543 222333  33445666777777777777777776654 22233222222221111   223


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC--CChhhHHHHHHHHHHcCChhHHHHHHH
Q 045674          199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVG--PDVVTYNTMIKGYCKVGKTQKAMEKFR  276 (650)
Q Consensus       199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~  276 (650)
                      ..++.++.+.-... .-|+...+.|.+.+.-.|++..+..+...+......  .-...|--+.++|-..|++++|..+|.
T Consensus       253 ~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~  331 (1018)
T KOG2002|consen  253 KKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYM  331 (1018)
T ss_pred             HHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHH
Confidence            34444444443332 224444444455555555555555544444432111  012234444555555555555555554


Q ss_pred             HHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------------------------------C
Q 045674          277 AMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI-------------------------------------E  319 (650)
Q Consensus       277 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------------------------------------~  319 (650)
                      ...+.+..--...+..+...+...|+++.+...|+.+.+...                                     +
T Consensus       332 ~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~  411 (1018)
T KOG2002|consen  332 ESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTP  411 (1018)
T ss_pred             HHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccc
Confidence            444332111122233344444555555555544444444321                                     2


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHH----HcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCH
Q 045674          320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMI----RRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYE---GVEPDE  392 (650)
Q Consensus       320 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~  392 (650)
                      .|...|..+..++....-+. ++.+|..+.    ..+-.+.+...|.++..+...|++++|...|.+....   ...+|.
T Consensus       412 ~d~~a~l~laql~e~~d~~~-sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de  490 (1018)
T KOG2002|consen  412 VDSEAWLELAQLLEQTDPWA-SLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDE  490 (1018)
T ss_pred             ccHHHHHHHHHHHHhcChHH-HHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccc
Confidence            23444444444433322222 244444333    1233344455555666666666666666666655433   112222


Q ss_pred             ------HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          393 ------VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN  466 (650)
Q Consensus       393 ------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  466 (650)
                            .+-..+...+-..++.+.|.+.|..+.+..+. -...|..++.+....+...+|...++..+..+ ..++..+.
T Consensus       491 ~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~ars  568 (1018)
T KOG2002|consen  491 GKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARS  568 (1018)
T ss_pred             cccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHH
Confidence                  11222333444455666666666666655432 22333333333334456667777777777653 55666777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHh------------cCCHHHHHHHHHHHHHCCCCCCHH
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEG-CDQTVYTYTILINGMFK------------EHRNEEALKLWDMMIDKGITPTAA  533 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~------------~~~~~~A~~~~~~~~~~~~~p~~~  533 (650)
                      .++..+.+...+..|.+-|+.+.+.- ..+|..+...|+..|..            .+..++|+++|.++++..+. |..
T Consensus       569 l~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~y  647 (1018)
T KOG2002|consen  569 LLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMY  647 (1018)
T ss_pred             HHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhh
Confidence            77777777777777877776665532 22567777777775542            34578999999999987665 788


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHH
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER-EIPGKIRTALINALR  612 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~  612 (650)
                      .-+.++-++...|++.+|..+|.++.+...+...+|.+++++|...|+|..|+++|+..++.-. ..+..+...|+.++.
T Consensus       648 AANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y  727 (1018)
T KOG2002|consen  648 AANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWY  727 (1018)
T ss_pred             hccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHH
Confidence            8888999999999999999999999988777889999999999999999999999999988743 346788999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674          613 KAGNADLAIKLMHSKIGVGYDRMGSIKR  640 (650)
Q Consensus       613 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~  640 (650)
                      ..|.+.+|.+.+..++...|....+..+
T Consensus       728 ~~~~~~eak~~ll~a~~~~p~~~~v~FN  755 (1018)
T KOG2002|consen  728 EAGKLQEAKEALLKARHLAPSNTSVKFN  755 (1018)
T ss_pred             HhhhHHHHHHHHHHHHHhCCccchHHhH
Confidence            9999999999999999998886555444

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.95  E-value=1.7e-21  Score=208.78  Aligned_cols=527  Identities=10%  Similarity=-0.003  Sum_probs=359.0

Q ss_pred             HHHHHHhcCCCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHH-----
Q 045674           82 RQILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDC-----  156 (650)
Q Consensus        82 ~~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~-----  156 (650)
                      ..+..++...++.+.++..+.+......+.......+...   +++.+|...++.+.+.  .+.+..++..++..     
T Consensus        82 ~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye~l~~~--~P~n~~~~~~la~~~~~~~  156 (987)
T PRK09782         82 LYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVEELLAQ--QKACDAVPTLRCRSEVGQN  156 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHHHHHHh--CCCChhHHHHHHHHhhccc
Confidence            3444555567788888887777655544433333333222   6777888888865554  34456666666665     


Q ss_pred             ---HHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cC
Q 045674          157 ---LALCGDVDRVRLVFNELKEKGFLMTVSA-ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN-SM  231 (650)
Q Consensus       157 ---~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~-~~  231 (650)
                         |.+.   ++|.+.++ .......++..+ ...+...|.+.|++++|+.++.++.+.+.. +......|...|.. .+
T Consensus       157 ~l~y~q~---eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k~~pl-~~~~~~~L~~ay~q~l~  231 (987)
T PRK09782        157 ALRLAQL---PVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQQNTL-SAAERRQWFDVLLAGQL  231 (987)
T ss_pred             hhhhhhH---HHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhhC
Confidence               5554   44444443 222221223333 333377777777777788777777776432 44445555555555 24


Q ss_pred             ChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC-CCHHHH--------------------
Q 045674          232 FIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQ-PDKITY--------------------  290 (650)
Q Consensus       232 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~--------------------  290 (650)
                      + +.+..+++..    +..+...+..++..|.+.|+.++|.++++++...... |...+|                    
T Consensus       232 ~-~~a~al~~~~----lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~~~~~l~r~~~~~~~~~~~~~~  306 (987)
T PRK09782        232 D-DRLLALQSQG----IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKSWLYLLSKYSANPVQALANYTV  306 (987)
T ss_pred             H-HHHHHHhchh----cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHHHHHHHHhccCchhhhccchhh
Confidence            4 5555554421    1345666667777777777777777666665432111 111111                    


Q ss_pred             -------------------------------------------------------------------------HHHHHHH
Q 045674          291 -------------------------------------------------------------------------MTLIQAC  297 (650)
Q Consensus       291 -------------------------------------------------------------------------~~l~~~~  297 (650)
                                                                                               ..+....
T Consensus       307 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~  386 (987)
T PRK09782        307 QFADNRQYVVGATLPVLLKEGQYDAAQKLLATLPANEMLEERYAVSVATRNKAEALRLARLLYQQEPANLTRLDQLTWQL  386 (987)
T ss_pred             hhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCCcchHHHHHHhhccccCchhHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence                                                                                     1111122


Q ss_pred             HhcCCHHHHHHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCCh---HHHHHH----------------------HHHHHH
Q 045674          298 YLEGDFDSCLSLYHEMDEK-G-IEIPSHAYNLVIGGLCKVGKC---IEGHAI----------------------FESMIR  350 (650)
Q Consensus       298 ~~~~~~~~a~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~---~~a~~~----------------------~~~~~~  350 (650)
                      .+.|+.++|.++++..... + ...+......++..|.+.+..   .++..+                      ++....
T Consensus       387 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  466 (987)
T PRK09782        387 MQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVR  466 (987)
T ss_pred             HHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHHH
Confidence            3345556666666655541 1 112334455677777766552   222222                      222211


Q ss_pred             c-CC-Cc--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674          351 R-GC-QP--NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN  426 (650)
Q Consensus       351 ~-~~-~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  426 (650)
                      . +. ++  +...|..+..++.. ++.++|+..+.+....  .|+......+...+...|++++|...|+++....+  +
T Consensus       467 al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p--~  541 (987)
T PRK09782        467 LLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDM--S  541 (987)
T ss_pred             hcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC--C
Confidence            1 11 23  56677888888876 8899999988888765  46655444455556789999999999999866533  3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING  506 (650)
Q Consensus       427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  506 (650)
                      ...+..++.++.+.|++++|...+++.++.+ +.+...+..+.....+.|++++|+..+++.++..  |+...+..+..+
T Consensus       542 ~~a~~~la~all~~Gd~~eA~~~l~qAL~l~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~  618 (987)
T PRK09782        542 NEDLLAAANTAQAAGNGAARDRWLQQAEQRG-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATI  618 (987)
T ss_pred             cHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            3445677888999999999999999999875 4555555555555566799999999999999874  568889999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      +.+.|++++|+..++++++..+. +...+..++.++...|++++|+..++++++..|.+..++..++.++...|++++|+
T Consensus       619 l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~  697 (987)
T PRK09782        619 YRQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQ  697 (987)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence            99999999999999999998655 77888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ..++++++.. +.+..+....++...+..+++.|.+.+++....++.
T Consensus       698 ~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~~  743 (987)
T PRK09782        698 HYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSFD  743 (987)
T ss_pred             HHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCcc
Confidence            9999999886 666677788888889999999999999998886654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.95  E-value=1.5e-22  Score=213.76  Aligned_cols=432  Identities=12%  Similarity=-0.016  Sum_probs=257.0

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV  228 (650)
Q Consensus       149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (650)
                      .+...+..+.+.|++++|+..|+++++.  .|+...|..+..+|.+.|++++|++.+++..+.. +.+...+..+..++.
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~  205 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYD  205 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHH
Confidence            4556777788888888888888887765  3466677777778888888888888888877753 235567777777778


Q ss_pred             hcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          229 NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLS  308 (650)
Q Consensus       229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  308 (650)
                      ..|++++|...|..+.... ..+......++..+..    ..+........+.. +.+...+..+.. +...........
T Consensus       206 ~lg~~~eA~~~~~~~~~~~-~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~~~~-~~~~~~~~~~~~  278 (615)
T TIGR00990       206 GLGKYADALLDLTASCIID-GFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTFVGN-YLQSFRPKPRPA  278 (615)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHHHHH-HHHHccCCcchh
Confidence            8888888877776554332 1111111122211111    12222233332221 112222222222 111111111111


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHH---HhcCChHHHHHHHHHHHHcC-CCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          309 LYHEMDEKGIEIPSHAYNLVIGGL---CKVGKCIEGHAIFESMIRRG-CQP-NVAIYTALIDSYAKLGSMNEAINIFERM  383 (650)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~  383 (650)
                      -+....+.... ....+..+...+   ...+++++|.+.|+..++.+ ..| ....++.+...+...|++++|+..|++.
T Consensus       279 ~~~~~~~~~~~-~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka  357 (615)
T TIGR00990       279 GLEDSNELDEE-TGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS  357 (615)
T ss_pred             hhhcccccccc-cccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            11111111000 011111111111   22356777777777777653 122 3445666677777777777777777777


Q ss_pred             HHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674          384 KYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS  462 (650)
Q Consensus       384 ~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  462 (650)
                      .+.  .|+ ...|..+...+...|++++|+..|+.+.+..+. +..++..++..+...|++++|+..|++.++.. |.+.
T Consensus       358 l~l--~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~  433 (615)
T TIGR00990       358 IEL--DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFI  433 (615)
T ss_pred             HHc--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCH
Confidence            765  333 446666677777777777777777777766544 56667777777777777777777777777764 5566


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH------HHH
Q 045674          463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA------SFR  536 (650)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~------~~~  536 (650)
                      ..+..++.++.+.|++++|+..|++.++..+. +...++.++.++...|++++|+..|+++++.....+..      .+.
T Consensus       434 ~~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~  512 (615)
T TIGR00990       434 FSHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLIN  512 (615)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHH
Confidence            66777777777777777777777777765332 56667777777777777777777777777653321111      111


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ..+..+...|++++|.+++++++..++.+..++..++.++...|++++|+++|+++.+..
T Consensus       513 ~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~  572 (615)
T TIGR00990       513 KALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELA  572 (615)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHh
Confidence            111222335777777777777777766666677777777777777777777777777654

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.94  E-value=9e-22  Score=207.90  Aligned_cols=432  Identities=13%  Similarity=-0.016  Sum_probs=239.6

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH
Q 045674          185 ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK  264 (650)
Q Consensus       185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  264 (650)
                      +......+.+.|++++|+..|++.+..  .|+...|..+..++.+.|++++|...++..++.. +.+..+|..+..+|..
T Consensus       130 ~k~~G~~~~~~~~~~~Ai~~y~~al~~--~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~  206 (615)
T TIGR00990       130 LKEKGNKAYRNKDFNKAIKLYSKAIEC--KPDPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG  206 (615)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence            344555666677777777777776653  4455666666677777777777777777766553 3345666667777777


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHH
Q 045674          265 VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAI  344 (650)
Q Consensus       265 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  344 (650)
                      .|++++|+..|......+.. +......++..+..    ..+........+... .+...+..+.. +...........-
T Consensus       207 lg~~~eA~~~~~~~~~~~~~-~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~-~~~~~~~~~~~-~~~~~~~~~~~~~  279 (615)
T TIGR00990       207 LGKYADALLDLTASCIIDGF-RNEQSAQAVERLLK----KFAESKAKEILETKP-ENLPSVTFVGN-YLQSFRPKPRPAG  279 (615)
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ccHHHHHHHHHHHH----HHHHHHHHHHHhcCC-CCCCCHHHHHH-HHHHccCCcchhh
Confidence            77777777666655443211 11111111111111    112222222222211 11111222222 1111111111111


Q ss_pred             HHHHHHcCCCcC-HHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCC-CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          345 FESMIRRGCQPN-VAIYTALIDSY---AKLGSMNEAINIFERMKYEG-VEP-DEVTYGVIISGLCKNERLEEAMQYFEFC  418 (650)
Q Consensus       345 ~~~~~~~~~~~~-~~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~-~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~  418 (650)
                      +....+.  .+. ...+..+...+   ...+++++|+..|++..+.+ ..| ....+..+...+...|++++|+..+++.
T Consensus       280 ~~~~~~~--~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~ka  357 (615)
T TIGR00990       280 LEDSNEL--DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKS  357 (615)
T ss_pred             hhccccc--ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            2211111  111 00111111111   22356777777777766543 122 2345666666666677777777777777


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          419 RANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVY  498 (650)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  498 (650)
                      .+..+. ....|..++.++...|++++|...|+++++.. +.+..++..++.++...|++++|+..|++.++..+. +..
T Consensus       358 l~l~P~-~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~  434 (615)
T TIGR00990       358 IELDPR-VTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIF  434 (615)
T ss_pred             HHcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHH
Confidence            665443 45566666666777777777777777776653 555667777777777777777777777777665433 555


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH-------HHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET-------AFED  571 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~  571 (650)
                      .+..++.++...|++++|+..++++++..+. +...+..++.++...|++++|++.|++++...+....       .+..
T Consensus       435 ~~~~la~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~  513 (615)
T TIGR00990       435 SHIQLGVTQYKEGSIASSMATFRRCKKNFPE-APDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINK  513 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHH
Confidence            6666666677777777777777777664332 4566666777777777777777777777766544111       1111


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+..+...|++++|.++++++++.+ +.+..++..++.++...|++++|+++|+++++....
T Consensus       514 a~~~~~~~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~  574 (615)
T TIGR00990       514 ALALFQWKQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELART  574 (615)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhcc
Confidence            2222333567777777777776664 445556666777777777777777777777666443

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.94  E-value=1.5e-21  Score=195.29  Aligned_cols=528  Identities=16%  Similarity=0.129  Sum_probs=400.3

Q ss_pred             chhhhHHHHHHhhcCCCChHHHHHHHHh------ccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHH
Q 045674           93 DMEANLDSFCRKFLIKLSPNFVSFVLRN------HDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRV  166 (650)
Q Consensus        93 ~~~~al~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  166 (650)
                      ..+.|+..|.++.  .++|..+...+..      .........++..+..+-..  .+.++.+.+.+++-|...|++..+
T Consensus       214 ~~~~a~~a~~ral--qLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~--n~~nP~~l~~LAn~fyfK~dy~~v  289 (1018)
T KOG2002|consen  214 MSEKALLAFERAL--QLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKE--NNENPVALNHLANHFYFKKDYERV  289 (1018)
T ss_pred             chhhHHHHHHHHH--hcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhh--cCCCcHHHHHHHHHHhhcccHHHH
Confidence            3445555555543  3444444443211      22334566777888777665  356788999999999999999999


Q ss_pred             HHHHHHHHHCCCC--CCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHh
Q 045674          167 RLVFNELKEKGFL--MTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVME  244 (650)
Q Consensus       167 ~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~  244 (650)
                      +.+.+.+......  .-...|-.+.++|...|++++|..+|.+..+......+..+..|...+...|+++.+...|+.+.
T Consensus       290 ~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~  369 (1018)
T KOG2002|consen  290 WHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVL  369 (1018)
T ss_pred             HHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHH
Confidence            9999998875311  22345888999999999999999999998876433224556667888999999999999999998


Q ss_pred             cCCCCCChhhHHHHHHHHHHcC----ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HC
Q 045674          245 NGKVGPDVVTYNTMIKGYCKVG----KTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMD----EK  316 (650)
Q Consensus       245 ~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~  316 (650)
                      +.. +-+..+..+|...|...+    ..++|..++.+..+.. +.|...|..+...+....-+.. +..|....    ..
T Consensus       370 k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~  446 (1018)
T KOG2002|consen  370 KQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESK  446 (1018)
T ss_pred             HhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHc
Confidence            764 446778888888888775    5678888888888764 4477888888877765544433 66665443    45


Q ss_pred             CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc---CCCc------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          317 GIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR---GCQP------NVAIYTALIDSYAKLGSMNEAINIFERMKYEG  387 (650)
Q Consensus       317 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  387 (650)
                      +..+.....|.+...+...|++.+|...|......   ...+      ++.+-..+...+...++.+.|.+.|..+.+. 
T Consensus       447 ~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke-  525 (1018)
T KOG2002|consen  447 GKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE-  525 (1018)
T ss_pred             CCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH-
Confidence            55678899999999999999999999999998765   1222      2323444888888889999999999999986 


Q ss_pred             CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHH
Q 045674          388 VEPDEV-TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCY  465 (650)
Q Consensus       388 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~  465 (650)
                       .|+-+ .|..++......+...+|..+++.....+-. +...+..++..+.+...+..|.+-|+...+.- ..+|+...
T Consensus       526 -hp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~-np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~Ysl  603 (1018)
T KOG2002|consen  526 -HPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSS-NPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSL  603 (1018)
T ss_pred             -CchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccC-CcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHH
Confidence             55543 4555554455568899999999998876543 67778888889999999999999777776642 23677777


Q ss_pred             HHHHHHHHH------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674          466 NVLIDALAK------------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA  533 (650)
Q Consensus       466 ~~l~~~~~~------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  533 (650)
                      ..|++.|.+            .+..++|+++|.++++..+. |...-|.++.+++..|++.+|..+|.++.+.... ...
T Consensus       604 iaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~d  681 (1018)
T KOG2002|consen  604 IALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FED  681 (1018)
T ss_pred             HHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCc
Confidence            888886653            34578899999999998665 8888899999999999999999999999986443 567


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      +|..++.+|..+|++..|+++|+...+....  +..+...|+.++.+.|.+.+|.+.+..+.... +.+..+...++-..
T Consensus       682 v~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~-p~~~~v~FN~a~v~  760 (1018)
T KOG2002|consen  682 VWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA-PSNTSVKFNLALVL  760 (1018)
T ss_pred             eeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-CccchHHhHHHHHH
Confidence            8899999999999999999999999876443  88999999999999999999999999998875 44443333332222


Q ss_pred             H-------------------hcCCHHHHHHHHHHHHHCCCC
Q 045674          612 R-------------------KAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       612 ~-------------------~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .                   ..+..+.|.++|.++.+.+..
T Consensus       761 kkla~s~lr~~k~t~eev~~a~~~le~a~r~F~~ls~~~d~  801 (1018)
T KOG2002|consen  761 KKLAESILRLEKRTLEEVLEAVKELEEARRLFTELSKNGDK  801 (1018)
T ss_pred             HHHHHHHHhcccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence            1                   234567788888888887665

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.93  E-value=3.1e-21  Score=202.74  Aligned_cols=330  Identities=12%  Similarity=0.072  Sum_probs=140.8

Q ss_pred             HHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          225 NGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD  304 (650)
Q Consensus       225 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  304 (650)
                      ..+.+.|++++|..+++.+.... +.+...+..++......|++++|.+.++++.+.. +.+...+..+...+...|+++
T Consensus        50 ~~~~~~g~~~~A~~l~~~~l~~~-p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~  127 (656)
T PRK15174         50 IACLRKDETDVGLTLLSDRVLTA-KNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYA  127 (656)
T ss_pred             HHHHhcCCcchhHHHhHHHHHhC-CCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHH
Confidence            33444455555555554444332 1223333333444444455555555555554432 113334444444444555555


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK  384 (650)
Q Consensus       305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  384 (650)
                      +|...+++..+.. +.+...+..++..+...|+.++|...++.+...... +...+..+ ..+...|++++|+..++++.
T Consensus       128 ~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l  204 (656)
T PRK15174        128 TVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALL  204 (656)
T ss_pred             HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHH
Confidence            5555555544432 113334444444444555555555544444433211 11122111 12444445555555444444


Q ss_pred             HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCC
Q 045674          385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE----AEELFEEMVEKGCPR  460 (650)
Q Consensus       385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~~  460 (650)
                      .....++...+..+...+...|++++|+..++.+....+. +...+..+..++...|++++    |...++++++.. |.
T Consensus       205 ~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~-P~  282 (656)
T PRK15174        205 PFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN-SD  282 (656)
T ss_pred             hcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC-CC
Confidence            3321112222233333444444555555444444444332 33444444444444444443    444444444432 33


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI  540 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  540 (650)
                      +...+..++..+.+.|++++|+..++++.+..+. +...+..+..++...|++++|+..++++.+.++. +...+..++.
T Consensus       283 ~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~-~~~~~~~~a~  360 (656)
T PRK15174        283 NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREKGV-TSKWNRYAAA  360 (656)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-chHHHHHHHH
Confidence            4444444444444444555554444444443322 3333444444444444455544444444443221 1122222334


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCC
Q 045674          541 GLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      ++...|+.++|...|+++.+..|
T Consensus       361 al~~~G~~deA~~~l~~al~~~P  383 (656)
T PRK15174        361 ALLQAGKTSEAESVFEHYIQARA  383 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCh
Confidence            44444444455444444444433

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.92  E-value=4.4e-21  Score=201.58  Aligned_cols=362  Identities=13%  Similarity=0.052  Sum_probs=293.3

Q ss_pred             HHhcCChhHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          227 LVNSMFIESSELVFKVMENGK--VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD  304 (650)
Q Consensus       227 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  304 (650)
                      +.+..+++.---.|....+..  -..+..-...++..+.+.|++++|..+++........ +...+..++.+....|+++
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~~~   93 (656)
T PRK15174         15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQPD   93 (656)
T ss_pred             hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCCHH
Confidence            566777776665665544321  0123334555677788899999999999999887533 4556667778888899999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK  384 (650)
Q Consensus       305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  384 (650)
                      +|...++++....+ .+...+..+...+...|++++|...++++++.. +.+...+..++..+...|++++|...++++.
T Consensus        94 ~A~~~l~~~l~~~P-~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~  171 (656)
T PRK15174         94 AVLQVVNKLLAVNV-CQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQA  171 (656)
T ss_pred             HHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHHH
Confidence            99999999998753 367788889999999999999999999999862 3356778889999999999999999999887


Q ss_pred             HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674          385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC  464 (650)
Q Consensus       385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  464 (650)
                      ..... +...+..+ ..+...|++++|...++.+.+..+..+...+..++.++...|++++|+..++++.+.. +.+...
T Consensus       172 ~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~~  248 (656)
T PRK15174        172 QEVPP-RGDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAAL  248 (656)
T ss_pred             HhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHH
Confidence            65322 22333333 3478899999999999998877554455555666788899999999999999999875 678888


Q ss_pred             HHHHHHHHHHcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          465 YNVLIDALAKCGKLDE----ALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI  540 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~----A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  540 (650)
                      +..++..|...|++++    |+..|+++.+..+. +...+..++..+...|++++|...++++.+..+. +...+..++.
T Consensus       249 ~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~  326 (656)
T PRK15174        249 RRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD-NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYAR  326 (656)
T ss_pred             HHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            9999999999999986    89999999987654 7788999999999999999999999999987554 5667888899


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ++...|++++|...++++...+|.+...+..++.++...|++++|+..|+++++..
T Consensus       327 ~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~  382 (656)
T PRK15174        327 ALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR  382 (656)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence            99999999999999999999888876667777889999999999999999999874

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.92  E-value=3.3e-20  Score=199.37  Aligned_cols=416  Identities=11%  Similarity=0.001  Sum_probs=231.9

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHH
Q 045674          179 LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTM  258 (650)
Q Consensus       179 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  258 (650)
                      +.+.....-.+......|+.++|+++|.+..... +.+...+..+...+...|++++|..++++.++.. +.+...+..+
T Consensus        12 ~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~l   89 (765)
T PRK10049         12 ALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRGL   89 (765)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence            4555556666666677777777777777776532 3345556777777777777777777777766542 3345566666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674          259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC  338 (650)
Q Consensus       259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  338 (650)
                      +..+...|++++|+..++++.+.. +.+.. +..+..++...|+.++|+..++++.+..+. +...+..++..+...|..
T Consensus        90 a~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~  166 (765)
T PRK10049         90 ILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLS  166 (765)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCh
Confidence            677777777777777777776653 22444 666666777777777777777777765433 444555566666666666


Q ss_pred             HHHHHHHHHHHHcCCCcCH------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH---H
Q 045674          339 IEGHAIFESMIRRGCQPNV------AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL---E  409 (650)
Q Consensus       339 ~~a~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~  409 (650)
                      ++|...++.+..   .|+.      .....++..+...+                              ....+++   +
T Consensus       167 e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~------------------------------~~~~~r~~~ad  213 (765)
T PRK10049        167 APALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPT------------------------------RSEKERYAIAD  213 (765)
T ss_pred             HHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccc------------------------------cChhHHHHHHH
Confidence            666666655443   1210      00111111111000                              0111112   4


Q ss_pred             HHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHH
Q 045674          410 EAMQYFEFCRAN-GVAVNAM-FY----SSLIDGLGKAGRVDEAEELFEEMVEKGCP-RDSYCYNVLIDALAKCGKLDEAL  482 (650)
Q Consensus       410 ~a~~~~~~~~~~-~~~~~~~-~~----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~  482 (650)
                      +|+..++.+.+. ...|+.. .+    ...+.++...|++++|+..|+.+.+.+.+ |+. ....+...|...|++++|+
T Consensus       214 ~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~  292 (765)
T PRK10049        214 RALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQ  292 (765)
T ss_pred             HHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHH
Confidence            455555544432 1111110 00    00012233445566666666665554311 111 1112344555566666666


Q ss_pred             HHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------CCC---HHHHHHHHHHHHhc
Q 045674          483 ALFKRMEDEGCDQ---TVYTYTILINGMFKEHRNEEALKLWDMMIDKGI-----------TPT---AASFRALSIGLCLS  545 (650)
Q Consensus       483 ~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----------~p~---~~~~~~l~~~~~~~  545 (650)
                      ..|+++.+.....   .......+..++...|++++|..+++++.+..+           .|+   ...+..++..+...
T Consensus       293 ~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~  372 (765)
T PRK10049        293 SILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYS  372 (765)
T ss_pred             HHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHc
Confidence            6666555432211   122334444455556666666666665554321           122   12334555666667


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      |+.++|++.++++....|.+..++..++.++...|++++|++.++++++.. |.+...+...+..+...|++++|..+++
T Consensus       373 g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~  451 (765)
T PRK10049        373 NDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTD  451 (765)
T ss_pred             CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            777777777777777666666777777777777777777777777777665 5556666666666777777777777777


Q ss_pred             HHHHCCCCC
Q 045674          626 SKIGVGYDR  634 (650)
Q Consensus       626 ~~~~~~~~~  634 (650)
                      ++++..++.
T Consensus       452 ~ll~~~Pd~  460 (765)
T PRK10049        452 DVVAREPQD  460 (765)
T ss_pred             HHHHhCCCC
Confidence            777766653

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.92  E-value=6.4e-20  Score=197.17  Aligned_cols=432  Identities=10%  Similarity=0.021  Sum_probs=308.0

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF  222 (650)
Q Consensus       143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (650)
                      .+.+.....-.+.+....|+.++|+.++.++.... +.+...+..+...+...|++++|+++|++..+.. +.+...+..
T Consensus        11 ~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~   88 (765)
T PRK10049         11 SALSNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE-PQNDDYQRG   88 (765)
T ss_pred             cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence            34566667778889999999999999999998733 5667779999999999999999999999998863 345677788


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045674          223 LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGD  302 (650)
Q Consensus       223 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  302 (650)
                      +...+...|++++|...++++.+.. +.+.. +..+...+...|+.++|+..++++.+... .+...+..+..++...+.
T Consensus        89 la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P-~~~~~~~~la~~l~~~~~  165 (765)
T PRK10049         89 LILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAP-QTQQYPTEYVQALRNNRL  165 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCC
Confidence            8889999999999999999998763 44566 88899999999999999999999998743 356666778888889999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHH
Q 045674          303 FDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSM---NEAINI  379 (650)
Q Consensus       303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~  379 (650)
                      .++|++.++....   .|+..  .. +       +...+......              .+.......+++   ++|+..
T Consensus       166 ~e~Al~~l~~~~~---~p~~~--~~-l-------~~~~~~~~~r~--------------~~~~~~~~~~r~~~ad~Al~~  218 (765)
T PRK10049        166 SAPALGAIDDANL---TPAEK--RD-L-------EADAAAELVRL--------------SFMPTRSEKERYAIADRALAQ  218 (765)
T ss_pred             hHHHHHHHHhCCC---CHHHH--HH-H-------HHHHHHHHHHh--------------hcccccChhHHHHHHHHHHHH
Confidence            9999998876654   12200  00 0       00011111100              011111222222   566666


Q ss_pred             HHHHHHC-CCCCCHH-hH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          380 FERMKYE-GVEPDEV-TY----GVIISGLCKNERLEEAMQYFEFCRANGVA-VNAMFYSSLIDGLGKAGRVDEAEELFEE  452 (650)
Q Consensus       380 ~~~~~~~-~~~p~~~-~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~  452 (650)
                      ++.+.+. ...|+.. .+    ...+..+...|++++|+..|+.+.+.+.. |+. ....+..+|...|++++|+.+|++
T Consensus       219 ~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~  297 (765)
T PRK10049        219 YDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTE  297 (765)
T ss_pred             HHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHH
Confidence            6666543 1122211 11    11123445667778888888777766532 222 222246677778888888888887


Q ss_pred             HHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHhcCCHH
Q 045674          453 MVEKGCPRD----SYCYNVLIDALAKCGKLDEALALFKRMEDEGC-----------DQT---VYTYTILINGMFKEHRNE  514 (650)
Q Consensus       453 ~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----------~~~---~~~~~~l~~~~~~~~~~~  514 (650)
                      +.+.. +.+    ......+..++...|++++|...++.+....+           .|+   ...+..++..+...|+++
T Consensus       298 ~l~~~-p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~  376 (765)
T PRK10049        298 LFYHP-ETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLP  376 (765)
T ss_pred             HhhcC-CCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHH
Confidence            76643 111    23455566667778888888888887776532           123   234556777888999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      +|+++++++....+. +...+..++..+...|++++|++.++++....|.+...+...+..+...|++++|..+++++++
T Consensus       377 eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~  455 (765)
T PRK10049        377 QAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVA  455 (765)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            999999999987555 6788889999999999999999999999999999888999999999999999999999999998


Q ss_pred             cCCCCCHHHHHHHHHHH
Q 045674          595 REREIPGKIRTALINAL  611 (650)
Q Consensus       595 ~~~~~~~~~~~~l~~~~  611 (650)
                      ..  |+......+...+
T Consensus       456 ~~--Pd~~~~~~~~~~~  470 (765)
T PRK10049        456 RE--PQDPGVQRLARAR  470 (765)
T ss_pred             hC--CCCHHHHHHHHHH
Confidence            74  4444334444443

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=3.9e-21  Score=193.19  Aligned_cols=299  Identities=15%  Similarity=0.088  Sum_probs=191.0

Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCC
Q 045674          331 GLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD---EVTYGVIISGLCKNER  407 (650)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~  407 (650)
                      .+...|++++|...|+++.+.+ +.+..++..++..+...|++++|..+++.+...+..++   ...+..+...|...|+
T Consensus        44 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~  122 (389)
T PRK11788         44 NFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL  122 (389)
T ss_pred             HHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence            3445566666666666666542 12344556666666666666666666666655321111   1345556666666677


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHH
Q 045674          408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD----SYCYNVLIDALAKCGKLDEALA  483 (650)
Q Consensus       408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~  483 (650)
                      +++|..+|+++.+..+. +..++..++.++.+.|++++|.+.++.+.+.+..+.    ...+..++..+.+.|++++|..
T Consensus       123 ~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~  201 (389)
T PRK11788        123 LDRAEELFLQLVDEGDF-AEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA  201 (389)
T ss_pred             HHHHHHHHHHHHcCCcc-hHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence            77777777666654332 555666667777777777777777777666531111    1234456666777777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674          484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      .|+++.+..+. +...+..++..+...|++++|.++++++.+.++.....++..++.+|...|++++|...++++.+..|
T Consensus       202 ~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p  280 (389)
T PRK11788        202 LLKKALAADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYP  280 (389)
T ss_pred             HHHHHHhHCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            77777765432 45566677777777777888887777777654332345566777777788888888888888777766


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCh
Q 045674          564 IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK---AGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      ... .+..++..+.+.|++++|.++++++++.  .|+...+..+...+..   .|+.++|+.++++++++++.|+
T Consensus       281 ~~~-~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~  352 (389)
T PRK11788        281 GAD-LLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRK  352 (389)
T ss_pred             Cch-HHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCC
Confidence            543 3477778888888888888888887765  3566566655555543   4577788888888887665543

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.91  E-value=1.6e-18  Score=182.30  Aligned_cols=443  Identities=11%  Similarity=0.043  Sum_probs=258.2

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN  225 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  225 (650)
                      .+.+...-+....+.|+++.|+..|+++++.. +.+......++..+...|+.++|+..+++.... ..........+..
T Consensus        33 ~~~~~y~~aii~~r~Gd~~~Al~~L~qaL~~~-P~~~~av~dll~l~~~~G~~~~A~~~~eka~~p-~n~~~~~llalA~  110 (822)
T PRK14574         33 MADTQYDSLIIRARAGDTAPVLDYLQEESKAG-PLQSGQVDDWLQIAGWAGRDQEVIDVYERYQSS-MNISSRGLASAAR  110 (822)
T ss_pred             chhHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-ccchhhHHHHHHHHHHcCCcHHHHHHHHHhccC-CCCCHHHHHHHHH
Confidence            34444555556667777777777777777653 222222226666666777777777777777621 1122333333344


Q ss_pred             HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS  305 (650)
Q Consensus       226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (650)
                      .+...|++++|.++++++.+.. +.+...+..++..|...++.++|++.++++...  .|+...+..++..+...++..+
T Consensus       111 ly~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~  187 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYD  187 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHH
Confidence            6666677777777777777653 334555556667777777777777777777664  3444444444444444555555


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH------HHHHHHH---H--hcC---
Q 045674          306 CLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIY------TALIDSY---A--KLG---  371 (650)
Q Consensus       306 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~------~~l~~~~---~--~~~---  371 (650)
                      |++.++++.+.. +.+...+..+...+.+.|-...|.++..+-... +.+....+      ..+++.-   .  ...   
T Consensus       188 AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~  265 (822)
T PRK14574        188 ALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFD  265 (822)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHH
Confidence            777777777764 335666666666777777766666555432211 11111000      0001000   0  011   


Q ss_pred             CHHHHHHHHHHHHHC-CCCCCH-----HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674          372 SMNEAINIFERMKYE-GVEPDE-----VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE  445 (650)
Q Consensus       372 ~~~~A~~~~~~~~~~-~~~p~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  445 (650)
                      -.+.|+.-++.+... +..|..     ....-.+.++...|++.++++.|+.+...+.+....+-..++.+|...++.++
T Consensus       266 ~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~k  345 (822)
T PRK14574        266 IADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEK  345 (822)
T ss_pred             HHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHH
Confidence            134445555554431 112321     12223444566777777777777777777655455566677777777777778


Q ss_pred             HHHHHHHHHHcC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-------------CCCHH-HHHHHHHH
Q 045674          446 AEELFEEMVEKG-----CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC-------------DQTVY-TYTILING  506 (650)
Q Consensus       446 A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-------------~~~~~-~~~~l~~~  506 (650)
                      |+.+++.+....     .+++......|..+|...+++++|..+++++.+..+             .||-. .+..++..
T Consensus       346 A~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~  425 (822)
T PRK14574        346 AAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQS  425 (822)
T ss_pred             HHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHH
Confidence            887777776542     122333345667777777777777777777766321             12222 22334455


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      +...|+..+|.+.++++....+. |......++..+...|.+.+|...++.+....|.+..+....+.++...|++++|.
T Consensus       426 ~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~  504 (822)
T PRK14574        426 LVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQME  504 (822)
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHH
Confidence            56667777777777777665444 66666667777777777777777776666666666666666777777777777777


Q ss_pred             HHHHHHHHcC
Q 045674          587 KLADGIVDRE  596 (650)
Q Consensus       587 ~~~~~~~~~~  596 (650)
                      .+.+++++..
T Consensus       505 ~~~~~l~~~~  514 (822)
T PRK14574        505 LLTDDVISRS  514 (822)
T ss_pred             HHHHHHHhhC
Confidence            7777666653

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=8.9e-21  Score=190.59  Aligned_cols=300  Identities=18%  Similarity=0.165  Sum_probs=202.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHHHhcCCH
Q 045674          297 CYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN---VAIYTALIDSYAKLGSM  373 (650)
Q Consensus       297 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~  373 (650)
                      +...|++++|...|+++.+.+. .+..++..++..+...|++++|..+++.+...+..++   ...+..++..|.+.|++
T Consensus        45 ~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         45 FLLNEQPDKAIDLFIEMLKVDP-ETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HHhcCChHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            3444555555555555554422 2334455555555555555555555555554321111   23455666677777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 045674          374 NEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN----AMFYSSLIDGLGKAGRVDEAEEL  449 (650)
Q Consensus       374 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~  449 (650)
                      ++|..+|+++.+.. ..+..++..++..+.+.|++++|.+.++.+.+.++.+.    ...+..++..+...|++++|...
T Consensus       124 ~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~  202 (389)
T PRK11788        124 DRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL  202 (389)
T ss_pred             HHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence            77777777776542 23455666777777777777777777777766544322    12345567777888888888888


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          450 FEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT  529 (650)
Q Consensus       450 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  529 (650)
                      ++++.+.. +.+...+..++..|.+.|++++|.+.++++.+.++.....+++.++.+|...|++++|...++++.+..  
T Consensus       203 ~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--  279 (389)
T PRK11788        203 LKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--  279 (389)
T ss_pred             HHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--
Confidence            88888764 556677788888888889999999988888876443334567788888888999999999999888763  


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          530 PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK---TGRIKEACKLADGIVDREREIPGK  602 (650)
Q Consensus       530 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~  602 (650)
                      |+...+..++..+.+.|++++|..+++++++..|.+. .+..+...++.   .|+.++|+.+++++++.++.+++.
T Consensus       280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        280 PGADLLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            4555667888888899999999999998888766544 45555555543   558888999898888766566554

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.90  E-value=3e-18  Score=180.30  Aligned_cols=446  Identities=9%  Similarity=-0.003  Sum_probs=332.9

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHH
Q 045674          184 AANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYC  263 (650)
Q Consensus       184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  263 (650)
                      +.-.-+....+.|+++.|+..|++..+....-....+ .++..+...|+.++|+..+++..... .........++..|.
T Consensus        36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~-n~~~~~llalA~ly~  113 (822)
T PRK14574         36 TQYDSLIIRARAGDTAPVLDYLQEESKAGPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSM-NISSRGLASAARAYR  113 (822)
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHhhCccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCC-CCCHHHHHHHHHHHH
Confidence            3334444567899999999999999986322112344 77788888899999999999998311 222333344467888


Q ss_pred             HcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHH
Q 045674          264 KVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHA  343 (650)
Q Consensus       264 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  343 (650)
                      ..|++++|+++|+++.+.... +...+..++..+...++.++|++.++.+....  |+...+..++..+...++..+|++
T Consensus       114 ~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d--p~~~~~l~layL~~~~~~~~~AL~  190 (822)
T PRK14574        114 NEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERD--PTVQNYMTLSYLNRATDRNYDALQ  190 (822)
T ss_pred             HcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC--cchHHHHHHHHHHHhcchHHHHHH
Confidence            999999999999999987533 56777788899999999999999999998874  344445555555555677767999


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH------HHHHHHH-----HhcCC---HH
Q 045674          344 IFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY------GVIISGL-----CKNER---LE  409 (650)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~------~~l~~~~-----~~~g~---~~  409 (650)
                      .++++++.. +.+...+..+..++.+.|-...|.++..+-... +.+....+      ...++.-     ...++   .+
T Consensus       191 ~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d  268 (822)
T PRK14574        191 ASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD  268 (822)
T ss_pred             HHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence            999999984 336777788889999999999999877754321 11111111      1111100     01122   34


Q ss_pred             HHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          410 EAMQYFEFCRAN-GVAVNA-----MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALA  483 (650)
Q Consensus       410 ~a~~~~~~~~~~-~~~~~~-----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  483 (650)
                      .|+.-++.+... +..|..     ....-.+-++...+++.++++.++.+...+.+.-..+...++.+|...+++++|+.
T Consensus       269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~  348 (822)
T PRK14574        269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP  348 (822)
T ss_pred             HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence            455555555542 111221     12223456678899999999999999988765556688899999999999999999


Q ss_pred             HHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-------------CCCHH-HHHHHHHHHHh
Q 045674          484 LFKRMEDEGC-----DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI-------------TPTAA-SFRALSIGLCL  544 (650)
Q Consensus       484 ~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------------~p~~~-~~~~l~~~~~~  544 (650)
                      +|+.+.....     .++......|..++...+++++|..+++++.+..+             .||-. ....++..+..
T Consensus       349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~  428 (822)
T PRK14574        349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA  428 (822)
T ss_pred             HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence            9999976531     23444457889999999999999999999987322             22322 33456777889


Q ss_pred             cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674          545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLM  624 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  624 (650)
                      .|+..+|++.++++....|.+..+...++.++...|++.+|.+.++.+.... |.+..+....+.++...|++.+|..+.
T Consensus       429 ~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~  507 (822)
T PRK14574        429 LNDLPTAQKKLEDLSSTAPANQNLRIALASIYLARDLPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLT  507 (822)
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            9999999999999999999999999999999999999999999998888775 677888889999999999999999999


Q ss_pred             HHHHHCCCCChhh
Q 045674          625 HSKIGVGYDRMGS  637 (650)
Q Consensus       625 ~~~~~~~~~~~~~  637 (650)
                      ..+++..|+...+
T Consensus       508 ~~l~~~~Pe~~~~  520 (822)
T PRK14574        508 DDVISRSPEDIPS  520 (822)
T ss_pred             HHHHhhCCCchhH
Confidence            9999998885443

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.89  E-value=1.1e-16  Score=153.72  Aligned_cols=463  Identities=11%  Similarity=0.040  Sum_probs=319.2

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHH----HHCCCCCCHHHHHHHHHHHHhcC
Q 045674          156 CLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSM----KENGIEPSLYTYNFLMNGLVNSM  231 (650)
Q Consensus       156 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~----~~~~~~~~~~~~~~ll~~~~~~~  231 (650)
                      +|++..-++.|..++....+. ++.+..+|.+-...--.+|+.+...++..+-    ...|+..+...|..=...+-..|
T Consensus       415 AlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ag  493 (913)
T KOG0495|consen  415 ALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAG  493 (913)
T ss_pred             HHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcC
Confidence            344455566777777776664 4666677766666666677766666665543    34466666666666666666666


Q ss_pred             ChhHHHHHHHHHhcCCCCC--ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          232 FIESSELVFKVMENGKVGP--DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSL  309 (650)
Q Consensus       232 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  309 (650)
                      ..-.+..+....+..|+.-  -..+|+.-...|.+.+.++-|..+|...++.. +-+...|...+..--..|..++...+
T Consensus       494 sv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~slWlra~~~ek~hgt~Esl~Al  572 (913)
T KOG0495|consen  494 SVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKKSLWLRAAMFEKSHGTRESLEAL  572 (913)
T ss_pred             ChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchhHHHHHHHHHHHhcCcHHHHHHH
Confidence            6666666666666555432  24567777777777777777777777776652 33456666666666667777777777


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          310 YHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVE  389 (650)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  389 (650)
                      +++....- +-....+...+..+-..|+...|+.++..+.+.... +...|.+-+.......+++.|..+|.+....  .
T Consensus       573 lqkav~~~-pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--s  648 (913)
T KOG0495|consen  573 LQKAVEQC-PKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--S  648 (913)
T ss_pred             HHHHHHhC-CcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--C
Confidence            77777663 334555666666667778888888888777776333 5667777777777777788888888777654  5


Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          390 PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI  469 (650)
Q Consensus       390 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  469 (650)
                      |+...|.--+....-.+..++|++++++.++.-+. -...|..+.+.+.+.++++.|.+.|..-.+. +|..+..|..|.
T Consensus       649 gTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~-f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLa  726 (913)
T KOG0495|consen  649 GTERVWMKSANLERYLDNVEEALRLLEEALKSFPD-FHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLA  726 (913)
T ss_pred             CcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCc-hHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHH
Confidence            56666666555566677778888888777776433 4566777777777788888887777776665 466677777777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          470 DALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA  549 (650)
Q Consensus       470 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  549 (650)
                      ..-.+.|++-.|..++++..-.++. +...|...+..-.+.|..+.|..+..++++.- +.+...|..-++..-+.++-.
T Consensus       727 kleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQec-p~sg~LWaEaI~le~~~~rkT  804 (913)
T KOG0495|consen  727 KLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQEC-PSSGLLWAEAIWLEPRPQRKT  804 (913)
T ss_pred             HHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccchhHHHHHHhccCcccch
Confidence            7777777788888888877776655 67777777777778888888887777777652 325556666666666655544


Q ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .+.+.+.+.    -.|+.++..++..++...++++|.+.|+++++.+ +.+..+|..+...+..+|.-+.-.+++++...
T Consensus       805 ks~DALkkc----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~eed~kev~~~c~~  879 (913)
T KOG0495|consen  805 KSIDALKKC----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGTEEDQKEVLKKCET  879 (913)
T ss_pred             HHHHHHHhc----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence            444333332    3377788888888888888888999888888886 67778888888888888888888888888776


Q ss_pred             CCCC
Q 045674          630 VGYD  633 (650)
Q Consensus       630 ~~~~  633 (650)
                      -.|.
T Consensus       880 ~EP~  883 (913)
T KOG0495|consen  880 AEPT  883 (913)
T ss_pred             cCCC
Confidence            5544

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.89  E-value=6e-17  Score=155.43  Aligned_cols=467  Identities=12%  Similarity=0.047  Sum_probs=324.9

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 045674          160 CGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELV  239 (650)
Q Consensus       160 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~  239 (650)
                      ..+.+.|+.++.++.+. ++.+...|.+    |.+..-++.|..++++..+. ++.+...|.+-...--..|+.+...++
T Consensus       389 lE~~~darilL~rAvec-cp~s~dLwlA----larLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~ki  462 (913)
T KOG0495|consen  389 LEEPEDARILLERAVEC-CPQSMDLWLA----LARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKI  462 (913)
T ss_pred             ccChHHHHHHHHHHHHh-ccchHHHHHH----HHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHH
Confidence            34455566666666654 3444444443    34455667777777777765 555666666666556667777777776


Q ss_pred             HHHHh----cCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          240 FKVME----NGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP--DKITYMTLIQACYLEGDFDSCLSLYHEM  313 (650)
Q Consensus       240 ~~~~~----~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~  313 (650)
                      +++.+    ..|+.-+...|..-...+-..|..-.+..+....+..|+.-  -..||..-...|.+.+.++-|..+|...
T Consensus       463 i~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~a  542 (913)
T KOG0495|consen  463 IDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHA  542 (913)
T ss_pred             HHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHH
Confidence            65543    34566666677777777777777777777777777666542  2356777777777777777777777777


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674          314 DEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV  393 (650)
Q Consensus       314 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~  393 (650)
                      ++.. +-+...|...+..--..|..++-..+|++++.. ++-....|...+..+-..|+...|..++.++.+.... +..
T Consensus       543 lqvf-p~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-see  619 (913)
T KOG0495|consen  543 LQVF-PCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEE  619 (913)
T ss_pred             Hhhc-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHH
Confidence            7652 335556666666656667777777777777776 2334455555566666778888888888877765322 456


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA  473 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (650)
                      .|...+........++.|..+|.+....  .++..+|.--+....-.++.++|++++++.++. ++.-...|..+++.+.
T Consensus       620 iwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~e  696 (913)
T KOG0495|consen  620 IWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIEE  696 (913)
T ss_pred             HHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHHH
Confidence            6777777777778888888888777664  345566666666666677788888888887776 4556677778888888


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      +.++++.|.+.|..-.+. ++.....|..|...--+.|..-.|..++++..-.++. +...|...++.-.+.|+.++|..
T Consensus       697 ~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~  774 (913)
T KOG0495|consen  697 QMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAEL  774 (913)
T ss_pred             HHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHH
Confidence            888888888777766554 3334455555555555677888888888888776665 67777777888888888888888


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ++.++++..|.+...|..-+...-+.++-......+++.     ..|+.+...++..+....++++|++.|+++.+.+++
T Consensus       775 lmakALQecp~sg~LWaEaI~le~~~~rkTks~DALkkc-----e~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d  849 (913)
T KOG0495|consen  775 LMAKALQECPSSGLLWAEAIWLEPRPQRKTKSIDALKKC-----EHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD  849 (913)
T ss_pred             HHHHHHHhCCccchhHHHHHHhccCcccchHHHHHHHhc-----cCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence            888888777777777777777766666655555555443     567888888999999999999999999999999999


Q ss_pred             Chhhhhhhhccc
Q 045674          634 RMGSIKRRVKFR  645 (650)
Q Consensus       634 ~~~~~~~~~~~~  645 (650)
                      .....-.+-+|+
T Consensus       850 ~GD~wa~fykfe  861 (913)
T KOG0495|consen  850 NGDAWAWFYKFE  861 (913)
T ss_pred             cchHHHHHHHHH
Confidence            776666665554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.88  E-value=2e-16  Score=146.25  Aligned_cols=470  Identities=12%  Similarity=0.088  Sum_probs=360.1

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG  226 (650)
Q Consensus       147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (650)
                      ...|...+.-=..++++..|+.+|++++..+ .-+...|...+..-.++..+..|..+|++.... ++--...|.-.+..
T Consensus        73 ~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~-lPRVdqlWyKY~ym  150 (677)
T KOG1915|consen   73 MQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI-LPRVDQLWYKYIYM  150 (677)
T ss_pred             HHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh-cchHHHHHHHHHHH
Confidence            3345555555567788899999999999876 557888999999999999999999999999885 23233345555555


Q ss_pred             HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC  306 (650)
Q Consensus       227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  306 (650)
                      --..|++..|.++|++-.+.  .|+..+|++.|+.-.+.+.++.|..++++..-  +.|++.+|.-...--.+.|+...+
T Consensus       151 EE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~a  226 (677)
T KOG1915|consen  151 EEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALA  226 (677)
T ss_pred             HHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHH
Confidence            56789999999999998866  89999999999999999999999999999986  468999999999988999999999


Q ss_pred             HHHHHHHHHC-C-CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC--HHHHHHHHHHHHhcCCHHHHHHH---
Q 045674          307 LSLYHEMDEK-G-IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN--VAIYTALIDSYAKLGSMNEAINI---  379 (650)
Q Consensus       307 ~~~~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~---  379 (650)
                      ..+|+...+. | -..+...+.+.+..-.++..++.|.-+|.-.++. ++.+  ...|..+...--+-|+.....+.   
T Consensus       227 R~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~  305 (677)
T KOG1915|consen  227 RSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVG  305 (677)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhh
Confidence            9999988764 1 1123445666666667788899999999998886 2222  33444444433344654433322   


Q ss_pred             -----HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH-----HH---HHHcCCHHH
Q 045674          380 -----FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM-FYSSLI-----DG---LGKAGRVDE  445 (650)
Q Consensus       380 -----~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~-----~~---~~~~~~~~~  445 (650)
                           |+.+...+ .-|-.+|-..++.-...|+.+...++|++++..-++.+.. .|...|     .+   -....+++.
T Consensus       306 KRk~qYE~~v~~n-p~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~er  384 (677)
T KOG1915|consen  306 KRKFQYEKEVSKN-PYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVER  384 (677)
T ss_pred             hhhhHHHHHHHhC-CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Confidence                 33444432 3367788888888888999999999999998874443321 122111     11   234688999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHH----HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          446 AEELFEEMVEKGCPRDSYCYNV----LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD  521 (650)
Q Consensus       446 A~~~~~~~~~~~~~~~~~~~~~----l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  521 (650)
                      +.++++..++. +|....++.-    .+....++.++..|.+++...+..  .|...+|...|..=.+.+.++....+++
T Consensus       385 tr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~--cPK~KlFk~YIelElqL~efDRcRkLYE  461 (677)
T KOG1915|consen  385 TRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGK--CPKDKLFKGYIELELQLREFDRCRKLYE  461 (677)
T ss_pred             HHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhcc--CCchhHHHHHHHHHHHHhhHHHHHHHHH
Confidence            99999999985 4555555544    444455788999999999988754  6788889888888889999999999999


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          522 MMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREI  599 (650)
Q Consensus       522 ~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  599 (650)
                      +.++.++. +..+|...+..-...|+.+.|..+|+-++++...  +...|...+..-...|.++.|..+|+++++..  +
T Consensus       462 kfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~  538 (677)
T KOG1915|consen  462 KFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--Q  538 (677)
T ss_pred             HHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--c
Confidence            99998777 8888988888888899999999999999987543  56778889999999999999999999999874  6


Q ss_pred             CHHHHHHHHHHHH-----hcC-----------CHHHHHHHHHHHHHC
Q 045674          600 PGKIRTALINALR-----KAG-----------NADLAIKLMHSKIGV  630 (650)
Q Consensus       600 ~~~~~~~l~~~~~-----~~g-----------~~~~A~~~~~~~~~~  630 (650)
                      ...+|..++.--.     +.|           +...|+.+|+++...
T Consensus       539 h~kvWisFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~~  585 (677)
T KOG1915|consen  539 HVKVWISFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANTY  585 (677)
T ss_pred             cchHHHhHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHHH
Confidence            6668887776544     344           667888888887653

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.86  E-value=1.1e-15  Score=152.90  Aligned_cols=537  Identities=13%  Similarity=0.080  Sum_probs=359.2

Q ss_pred             CCCchhhhHHHHHHhhcCC-CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674           90 GSSDMEANLDSFCRKFLIK-LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL  168 (650)
Q Consensus        90 ~~~~~~~al~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  168 (650)
                      .+|+.+.|...+.+..... ..+.....+-..+...|+.+.++.++-.+...  .+.+.+.|..+.....+.|.+++|.-
T Consensus       151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL--~p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHL--NPKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHhcccHHHHHH
Confidence            5699999999888876433 44455556667788899999999988877665  45677899999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCChhHHHHHHHHHh
Q 045674          169 VFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF----LMNGLVNSMFIESSELVFKVME  244 (650)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~A~~~~~~~~  244 (650)
                      .|.++++.. |++....-.-+..|-+.|+...|...|.++.....+.|..-+..    .+..+...++-+.|.+.++...
T Consensus       229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999986 66777777778889999999999999999998743223222222    3455666777788888888776


Q ss_pred             cC-CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC---------------------------CCCHHHHHHHHHH
Q 045674          245 NG-KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNV---------------------------QPDKITYMTLIQA  296 (650)
Q Consensus       245 ~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~  296 (650)
                      .. +-..+...+++++..|.+...++.|......+.....                           .++... .-+.-+
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic  386 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC  386 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence            52 2234566788999999999999999888877765111                           112222 112223


Q ss_pred             HHhcCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 045674          297 CYLEGDFDSCLSLYHEMDEKG--IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMN  374 (650)
Q Consensus       297 ~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  374 (650)
                      +......+....+...+.+.+  +.-+...|.-+..++...|++.+|..+|..+......-+...|..++.+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            333444444444444444444  344566788888888888888888888888887755556778888888888888888


Q ss_pred             HHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674          375 EAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRA--------NGVAVNAMFYSSLIDGLGKAGRVDE  445 (650)
Q Consensus       375 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~~~~~~  445 (650)
                      .|++.|+++...  .|+ ...-..|...+.+.|+.++|.+.+..+..        ....++..........+.+.|+.++
T Consensus       467 ~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~  544 (895)
T KOG2076|consen  467 EAIEFYEKVLIL--APDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREE  544 (895)
T ss_pred             HHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHH
Confidence            888888888765  343 34555666677888888888888877542        2233344444444555566666555


Q ss_pred             HHHHHHHHHHcC-----C--------------------------------------------C-C-----------CH--
Q 045674          446 AEELFEEMVEKG-----C--------------------------------------------P-R-----------DS--  462 (650)
Q Consensus       446 A~~~~~~~~~~~-----~--------------------------------------------~-~-----------~~--  462 (650)
                      -+.+...|+...     +                                            . +           +.  
T Consensus       545 fi~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd  624 (895)
T KOG2076|consen  545 FINTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDD  624 (895)
T ss_pred             HHHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence            443333332100     0                                            0 0           00  


Q ss_pred             --HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHH---H-HHHHHHHHHhcCCHHHHHHHHHHHHHC-CC--CCC-
Q 045674          463 --YCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVY---T-YTILINGMFKEHRNEEALKLWDMMIDK-GI--TPT-  531 (650)
Q Consensus       463 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~---~-~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~--~p~-  531 (650)
                        ..+..++.++++.+++++|+.+...+...... .+..   . -...+.+.+..+++..|...++.|+.. +.  .|. 
T Consensus       625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q  704 (895)
T KOG2076|consen  625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ  704 (895)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence              12245677888889999998888877654221 1222   2 233445556788888888888777743 11  111 


Q ss_pred             HHHHH-----------------------------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          532 AASFR-----------------------------------ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       532 ~~~~~-----------------------------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ...|+                                   ..+..+...+.+.-|+..+-++....|+++-+-.+++.++
T Consensus       705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglaf  784 (895)
T KOG2076|consen  705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAF  784 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHH
Confidence            11111                                   1112233457788899999998888888666555555554


Q ss_pred             HH----------cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          577 CK----------TGRIKEACKLADGIVDRERE-IPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       577 ~~----------~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      ..          +-..-++..++.+..+.... ...+++..++.+|...|-..-|..+|+++++..+
T Consensus       785 ih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~~p  851 (895)
T KOG2076|consen  785 IHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEVSP  851 (895)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCCCc
Confidence            32          12345566677666655311 2567888999999999999999999999999854

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.86  E-value=7.1e-16  Score=154.14  Aligned_cols=509  Identities=11%  Similarity=0.061  Sum_probs=350.5

Q ss_pred             CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045674          124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW  203 (650)
Q Consensus       124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  203 (650)
                      .|+.++|..++.-++++  .+....+|..|+.+|-..|+.+++...+-.+.... +.|...|..+.....+.|.+++|.-
T Consensus       152 rg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~  228 (895)
T KOG2076|consen  152 RGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARY  228 (895)
T ss_pred             hCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHH
Confidence            49999999999999998  46788899999999999999999999888777765 6788999999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhh----HHHHHHHHHHcCChhHHHHHHHHHH
Q 045674          204 VWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVT----YNTMIKGYCKVGKTQKAMEKFRAME  279 (650)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~A~~~~~~~~  279 (650)
                      +|.+.++.. +++...+---...|-+.|+...|...|.++.....+.|..-    .-.+++.+...++-+.|.+.++...
T Consensus       229 cy~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~  307 (895)
T KOG2076|consen  229 CYSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGAL  307 (895)
T ss_pred             HHHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            999999974 34555555566778899999999999999987643223332    2334566777788899999998877


Q ss_pred             hCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---------------------------CCCHHHHHHHHHH
Q 045674          280 ARN-VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI---------------------------EIPSHAYNLVIGG  331 (650)
Q Consensus       280 ~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---------------------------~~~~~~~~~l~~~  331 (650)
                      ..+ -..+...++.++..+.+...++.+......+.....                           .++..+ ..+.-+
T Consensus       308 s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~ic  386 (895)
T KOG2076|consen  308 SKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMIC  386 (895)
T ss_pred             hhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhh
Confidence            632 233567788899999999999999998887776211                           112222 123334


Q ss_pred             HHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674          332 LCKVGKCIEGHAIFESMIRRGC--QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE  409 (650)
Q Consensus       332 ~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  409 (650)
                      +......+....+.....+...  .-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.++
T Consensus       387 L~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e  466 (895)
T KOG2076|consen  387 LVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYE  466 (895)
T ss_pred             hhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHH
Confidence            4444444444455555555543  33466788899999999999999999999998755556779999999999999999


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------cCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVE--------KGCPRDSYCYNVLIDALAKCGKLDEA  481 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~~~~~~~~~~~~l~~~~~~~g~~~~A  481 (650)
                      +|.+.|+.++...+. +...-..|...+.+.|+.++|.+++..+..        .+..|+..........+.+.|+.++=
T Consensus       467 ~A~e~y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~f  545 (895)
T KOG2076|consen  467 EAIEFYEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEF  545 (895)
T ss_pred             HHHHHHHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHH
Confidence            999999999988665 666677788999999999999999998542        23455566666677778888887765


Q ss_pred             HHHHHHHHHcC-----CCC--------------------------------------------------------CH---
Q 045674          482 LALFKRMEDEG-----CDQ--------------------------------------------------------TV---  497 (650)
Q Consensus       482 ~~~~~~~~~~~-----~~~--------------------------------------------------------~~---  497 (650)
                      +.+...|....     +-|                                                        +.   
T Consensus       546 i~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddw  625 (895)
T KOG2076|consen  546 INTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDW  625 (895)
T ss_pred             HHHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHH
Confidence            44443332210     000                                                        00   


Q ss_pred             -HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHH---HH-HHHHHHHHhcCCHHHHHHHHHHHhhC-----CCCcH
Q 045674          498 -YTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAA---SF-RALSIGLCLSGKVARACKILDELAPK-----GIIPE  566 (650)
Q Consensus       498 -~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~---~~-~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~  566 (650)
                       ..+..++.++++.+++++|+.+...+.....- -+..   .+ ...+.+.+..+++..|..+++.++..     .+--.
T Consensus       626 fel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~  705 (895)
T KOG2076|consen  626 FELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQL  705 (895)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHH
Confidence             11233445556667777777766666643211 1111   12 22233445667777777777776655     22233


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-Chhhh
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD-RMGSI  638 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~  638 (650)
                      ..|+.......+.|+-.-=.+++..+.......++......+.-....+.+.-|+..+-++....++ |...+
T Consensus       706 ~l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl  778 (895)
T KOG2076|consen  706 NLWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINL  778 (895)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHH
Confidence            4444444444455544333444444443331122333344455566778888888888888888777 54443

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.85  E-value=3.1e-17  Score=150.66  Aligned_cols=472  Identities=12%  Similarity=0.040  Sum_probs=260.3

Q ss_pred             CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHcCCCH
Q 045674          123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLM----TVSAANSLIKSFGGLGMV  198 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~  198 (650)
                      ......+|+..++-..+..-|+.....-..+++++.+.++|..|++++.-.+..-...    -..+.+.+...+.+.|++
T Consensus       213 ~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy  292 (840)
T KOG2003|consen  213 ANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQY  292 (840)
T ss_pred             hhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccc
Confidence            3344555555555554444444444344445666666666666666666555431111    122344444556666666


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC------------ChhhHHHHH-----HH
Q 045674          199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP------------DVVTYNTMI-----KG  261 (650)
Q Consensus       199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~------------~~~~~~~l~-----~~  261 (650)
                      +.|+..|+.+.+.  .|+..+-..|+-++..-|+.++..+.|.+|+.....+            +....+.-+     +-
T Consensus       293 ~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~  370 (840)
T KOG2003|consen  293 DDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKN  370 (840)
T ss_pred             hhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHH
Confidence            6666666666553  4555555555555556666666666666665432111            111111111     11


Q ss_pred             HHHcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChH
Q 045674          262 YCKVGK--TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCI  339 (650)
Q Consensus       262 ~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  339 (650)
                      +-+.+.  -++++-.-.++..--+.|+-.           .| .+=+++.++.-...  +.-...-..-..-+.+.|+++
T Consensus       371 ~ek~~ka~aek~i~ta~kiiapvi~~~fa-----------~g-~dwcle~lk~s~~~--~la~dlei~ka~~~lk~~d~~  436 (840)
T KOG2003|consen  371 MEKENKADAEKAIITAAKIIAPVIAPDFA-----------AG-CDWCLESLKASQHA--ELAIDLEINKAGELLKNGDIE  436 (840)
T ss_pred             HHHhhhhhHHHHHHHHHHHhccccccchh-----------cc-cHHHHHHHHHhhhh--hhhhhhhhhHHHHHHhccCHH
Confidence            111110  111111111111100111100           00 01111111111100  000011111233466788888


Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          340 EGHAIFESMIRRGCQPNVAIYTALIDSYAK--LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEF  417 (650)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~  417 (650)
                      .|++++.-+.+...+.....-+.|...+.-  ..++..|..+-+...... .-+......-.......|++++|.+.|++
T Consensus       437 ~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~dka~~~yke  515 (840)
T KOG2003|consen  437 GAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLDKAAEFYKE  515 (840)
T ss_pred             HHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence            888887777665332222223333322222  335667766666555321 11222222223334456788888888888


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674          418 CRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV  497 (650)
Q Consensus       418 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  497 (650)
                      .+..+-. .......+.-.+...|++++|++.|-.+... ...+..++..+...|....+..+|++++.+.... ++.|+
T Consensus       516 al~ndas-c~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp  592 (840)
T KOG2003|consen  516 ALNNDAS-CTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDP  592 (840)
T ss_pred             HHcCchH-HHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCH
Confidence            7766433 2233333445567778888888888776554 2456777778888888888888888888777665 44577


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      ..+..|...|-+.|+-..|.+++-.--+. +..+..+...|+..|....-+++|+.+|+++.-..|.-...-..++.|+.
T Consensus       593 ~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~r  671 (840)
T KOG2003|consen  593 AILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFR  671 (840)
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHH
Confidence            77888888888888888888776655544 34477777778777777778888888888877655544444445667777


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          578 KTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      +.|++++|.++|+...++ +|.|...+..|+..+...|-
T Consensus       672 rsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl  709 (840)
T KOG2003|consen  672 RSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGL  709 (840)
T ss_pred             hcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccc
Confidence            888888888888887765 47777777777777766663

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.83  E-value=3.7e-16  Score=143.67  Aligned_cols=481  Identities=12%  Similarity=0.058  Sum_probs=305.8

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH----HH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSA-ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLY----TY  220 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~  220 (650)
                      +..+...++.-|.......+|+..++-+.+...-|+... -..+...+.+...+.+|+++|+.....-...+-.    ..
T Consensus       200 tfsvl~nlaqqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil  279 (840)
T KOG2003|consen  200 TFSVLFNLAQQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL  279 (840)
T ss_pred             hHHHHHHHHHHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence            344555667777777778888888888776644444332 2335566777888888888888777652222222    33


Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHH--------HH
Q 045674          221 NFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITY--------MT  292 (650)
Q Consensus       221 ~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~--------~~  292 (650)
                      +.+...+++.|+++.|+..|+...+.  .|+..+-..|+-++..-|+.++..+.|.+|...-..+|..-|        ..
T Consensus       280 ~nigvtfiq~gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~  357 (840)
T KOG2003|consen  280 NNIGVTFIQAGQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDN  357 (840)
T ss_pred             hhcCeeEEecccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchH
Confidence            34444567888888888888887765  567666555555666678888888888888754222222111        12


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHH
Q 045674          293 LIQACYLEGDFDSCLSLYHEMDEKGIEIPSH----AYNLVIGGLCKVGKCIEGHAIFESMIRRGC--QPNVAIYTALIDS  366 (650)
Q Consensus       293 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~  366 (650)
                      |+.-..+..       .++.|.+.+-. +..    +-..++. -+-.-++....++.-+.++...  +.-...-..-...
T Consensus       358 ll~eai~nd-------~lk~~ek~~ka-~aek~i~ta~kiia-pvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~  428 (840)
T KOG2003|consen  358 LLNEAIKND-------HLKNMEKENKA-DAEKAIITAAKIIA-PVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGE  428 (840)
T ss_pred             HHHHHHhhH-------HHHHHHHhhhh-hHHHHHHHHHHHhc-cccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHH
Confidence            222111111       11111111000 000    0000000 0000111111111111111100  0000000112345


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHH-HHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 045674          367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISG-LCK-NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVD  444 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  444 (650)
                      |.+.|+++.|+++++-+.+..-+.....-+.+-.. |.+ ..++..|.+.-+.....+ ..+......-.+.....|+++
T Consensus       429 ~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~d-ryn~~a~~nkgn~~f~ngd~d  507 (840)
T KOG2003|consen  429 LLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNID-RYNAAALTNKGNIAFANGDLD  507 (840)
T ss_pred             HHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhccc-ccCHHHhhcCCceeeecCcHH
Confidence            78999999999999988765322222222222222 222 345677777666655442 124444444445556689999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          445 EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMI  524 (650)
Q Consensus       445 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  524 (650)
                      +|.+.+++.+..+ ..-...+..+...+...|++++|++.|-++... ...+...+..+...|-...+...|++++.++.
T Consensus       508 ka~~~ykeal~nd-asc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~  585 (840)
T KOG2003|consen  508 KAAEFYKEALNND-ASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQAN  585 (840)
T ss_pred             HHHHHHHHHHcCc-hHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhc
Confidence            9999999998864 223344555666788999999999999887653 22378888888999999999999999998887


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          525 DKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR  604 (650)
Q Consensus       525 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  604 (650)
                      .. +..|+.++..|+..|-+.|+-.+|.+.+-.-....|.+.++..-|+.-|....-+++|+.+|+++.-  +.|+..-|
T Consensus       586 sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kw  662 (840)
T KOG2003|consen  586 SL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKW  662 (840)
T ss_pred             cc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHH
Confidence            76 4558889999999999999999999998888888777999999999999999999999999999875  47888888


Q ss_pred             HHHHH-HHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhc
Q 045674          605 TALIN-ALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVK  643 (650)
Q Consensus       605 ~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  643 (650)
                      ..++. ++++.|+|.+|..+|+....+=++.-.-++-+||
T Consensus       663 qlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvr  702 (840)
T KOG2003|consen  663 QLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVR  702 (840)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            76555 4578999999999999999887776555555554

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.82  E-value=3e-15  Score=136.81  Aligned_cols=323  Identities=17%  Similarity=0.251  Sum_probs=239.2

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC--CCHHHH-HHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGL--GMVEEL-LWVWRSMKENGIEPSLYTYNFLMNGL  227 (650)
Q Consensus       151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~a-~~~~~~~~~~~~~~~~~~~~~ll~~~  227 (650)
                      +.++. +...|++.++.-+|++|...|++.+...-..|.+..+-.  .++--| .+.|-.|...|-. +..+|       
T Consensus       120 ~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~-S~~sW-------  190 (625)
T KOG4422|consen  120 NNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGED-STSSW-------  190 (625)
T ss_pred             hHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccc-ccccc-------
Confidence            33443 356789999999999999999888888877776654333  332211 2333344444322 22222       


Q ss_pred             HhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          228 VNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCL  307 (650)
Q Consensus       228 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  307 (650)
                       +.|.+  |.-+|+..     +....++.+||.++|+--..+.|.+++++..+...+.+..+||.+|.+-.-.    ...
T Consensus       191 -K~G~v--AdL~~E~~-----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~----~~K  258 (625)
T KOG4422|consen  191 -KSGAV--ADLLFETL-----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS----VGK  258 (625)
T ss_pred             -ccccH--HHHHHhhc-----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh----ccH
Confidence             34443  33444433     4567899999999999999999999999998877788999999998765432    237


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH----HHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH-HHHHHHH
Q 045674          308 SLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEG----HAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNE-AINIFER  382 (650)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a----~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-A~~~~~~  382 (650)
                      +++.+|....+.||..|+|.++.+..+.|+++.|    .+++.+|.+.|+.|...+|..+|..+++.++..+ +..++.+
T Consensus       259 ~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~d  338 (625)
T KOG4422|consen  259 KLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWIND  338 (625)
T ss_pred             HHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHH
Confidence            8999999999999999999999999999988765    5678888899999999999999999999888754 4555555


Q ss_pred             HHH----CCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC---CHHHHHHHHHHHHHcCCHHHHH
Q 045674          383 MKY----EGVEP----DEVTYGVIISGLCKNERLEEAMQYFEFCRANG----VAV---NAMFYSSLIDGLGKAGRVDEAE  447 (650)
Q Consensus       383 ~~~----~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~~~~~~A~  447 (650)
                      +..    +.++|    |...|...+..|.+..+.+-|.++..-+....    +.+   ....|..+..+.|+....+.-.
T Consensus       339 I~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~  418 (625)
T KOG4422|consen  339 IQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTL  418 (625)
T ss_pred             HHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            432    23333    45567788888889999988888877654331    111   2234566778888889999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          448 ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD  494 (650)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  494 (650)
                      ..|+.|+-.-+.|+..+...++++..-.|.++-.-+++..+...|..
T Consensus       419 ~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght  465 (625)
T KOG4422|consen  419 KWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHT  465 (625)
T ss_pred             HHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhh
Confidence            99999998877788888888999888899999888888888876644

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.81  E-value=4e-14  Score=131.24  Aligned_cols=444  Identities=11%  Similarity=0.045  Sum_probs=344.4

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHH
Q 045674          179 LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTM  258 (650)
Q Consensus       179 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  258 (650)
                      ..+...|...+..-..++++..|..+|++.+..+ ..+...|.-.+..-.+...+..|..++++....- +.-...|--.
T Consensus        70 R~~~~~WikYaqwEesq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~l-PRVdqlWyKY  147 (677)
T KOG1915|consen   70 RLNMQVWIKYAQWEESQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTIL-PRVDQLWYKY  147 (677)
T ss_pred             HHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhc-chHHHHHHHH
Confidence            3466677777777778899999999999999875 3477778888888889999999999999998642 2223456666


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674          259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC  338 (650)
Q Consensus       259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  338 (650)
                      +..--..|+...|.++|++-.+.  .|+...|++.+..-.+-+..+.|..+|+..+-.  .|++..|...+..-.+.|..
T Consensus       148 ~ymEE~LgNi~gaRqiferW~~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~--HP~v~~wikyarFE~k~g~~  223 (677)
T KOG1915|consen  148 IYMEEMLGNIAGARQIFERWMEW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV--HPKVSNWIKYARFEEKHGNV  223 (677)
T ss_pred             HHHHHHhcccHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee--cccHHHHHHHHHHHHhcCcH
Confidence            66666779999999999998874  899999999999999999999999999999875  47899999999999999999


Q ss_pred             HHHHHHHHHHHHc-CC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHH
Q 045674          339 IEGHAIFESMIRR-GC-QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD---EVTYGVIISGLCKNERLEEAMQ  413 (650)
Q Consensus       339 ~~a~~~~~~~~~~-~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~  413 (650)
                      ..+..+|+.+++. |- .-+...+.+++.--.++..++.|.-+|+-..+.  -|.   ...|......--+-|+.....+
T Consensus       224 ~~aR~VyerAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd  301 (677)
T KOG1915|consen  224 ALARSVYERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIED  301 (677)
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHH
Confidence            9999999999875 21 112334555555556778899999999888765  332   3345555544445566544444


Q ss_pred             H--------HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH--HHHHHH--------HHHHHc
Q 045674          414 Y--------FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY--CYNVLI--------DALAKC  475 (650)
Q Consensus       414 ~--------~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~--~~~~l~--------~~~~~~  475 (650)
                      .        ++.+.+.++- |-.+|.-.+..-...|+.+...++|+.++.. +||-..  .|...+        -.-...
T Consensus       302 ~Iv~KRk~qYE~~v~~np~-nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~  379 (677)
T KOG1915|consen  302 AIVGKRKFQYEKEVSKNPY-NYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEA  379 (677)
T ss_pred             HHhhhhhhHHHHHHHhCCC-CchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3        3445555443 7788888899888999999999999999987 455321  121111        111246


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHH----HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          476 GKLDEALALFKRMEDEGCDQTVYTYTILI----NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA  551 (650)
Q Consensus       476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~----~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  551 (650)
                      .+.+.+.++++..++. ++....||..+-    .--.++.+...|.+++..++.  .-|-..++...+..-.+.++++..
T Consensus       380 ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRc  456 (677)
T KOG1915|consen  380 EDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRC  456 (677)
T ss_pred             hhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHH
Confidence            7899999999999885 333445554433    333478899999999998874  567888999999999999999999


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE-IPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .++|++.++.+|.+..+|...+..-...|+.+.|..+|+-++....- .....|...++.-...|.+++|+.+|+++++.
T Consensus       457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r  536 (677)
T KOG1915|consen  457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR  536 (677)
T ss_pred             HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence            99999999999999999999999999999999999999999875321 23457788888888999999999999999997


Q ss_pred             CCCCh
Q 045674          631 GYDRM  635 (650)
Q Consensus       631 ~~~~~  635 (650)
                      ...-.
T Consensus       537 t~h~k  541 (677)
T KOG1915|consen  537 TQHVK  541 (677)
T ss_pred             cccch
Confidence            65533

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.80  E-value=1.4e-14  Score=132.52  Aligned_cols=434  Identities=17%  Similarity=0.205  Sum_probs=313.3

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHhcCChhH-HHHHHHHHhcCCCCCChhhHHHH
Q 045674          182 VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG--LVNSMFIES-SELVFKVMENGKVGPDVVTYNTM  258 (650)
Q Consensus       182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~--~~~~~~~~~-A~~~~~~~~~~~~~~~~~~~~~l  258 (650)
                      +.+=+.|+.. ...|.+.++.-+|++|.+.|.+.+...-..|+..  |....+.-- -++.|-.|.+.| ..+..+|   
T Consensus       116 V~~E~nL~km-IS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---  190 (625)
T KOG4422|consen  116 VETENNLLKM-ISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---  190 (625)
T ss_pred             hcchhHHHHH-HhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc---
Confidence            3334444443 4578999999999999999988887777766654  334443332 234455555544 3344454   


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh
Q 045674          259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC  338 (650)
Q Consensus       259 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  338 (650)
                           +.|...+   ++-+..    +-+..++..+|.++|+--..+.|.++|++........+..+||.+|.+-.-.   
T Consensus       191 -----K~G~vAd---L~~E~~----PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~---  255 (625)
T KOG4422|consen  191 -----KSGAVAD---LLFETL----PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS---  255 (625)
T ss_pred             -----ccccHHH---HHHhhc----CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh---
Confidence                 3343332   333332    3366899999999999999999999999999888888999999998765433   


Q ss_pred             HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHH----HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH-HHH
Q 045674          339 IEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNE----AINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE-AMQ  413 (650)
Q Consensus       339 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~----A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~  413 (650)
                       ...+++.+|......||..++|+++.+..+.|+++.    |.+++.+|++.|+.|...+|..++..+++.++..+ +..
T Consensus       256 -~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~  334 (625)
T KOG4422|consen  256 -VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASS  334 (625)
T ss_pred             -ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHH
Confidence             238899999999999999999999999999998765    56778889999999999999999999999887754 445


Q ss_pred             HHHHHHH----CCCC----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHHHcCCH
Q 045674          414 YFEFCRA----NGVA----VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG----CPRD---SYCYNVLIDALAKCGKL  478 (650)
Q Consensus       414 ~~~~~~~----~~~~----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~  478 (650)
                      ++.++..    ...+    .+...|...+..|.+..+.+-|.++..-+....    ++++   ..-|..+....|+....
T Consensus       335 ~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~  414 (625)
T KOG4422|consen  335 WINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESI  414 (625)
T ss_pred             HHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHH
Confidence            5554433    2222    255677778888889999999998876655421    2233   23356677788888999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-C--------HH
Q 045674          479 DEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-K--------VA  549 (650)
Q Consensus       479 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~--------~~  549 (650)
                      +.-...|+.|.-.-.-|+..+...++.+..-.|+++-..++|..++..|..........+...+++.. .        +.
T Consensus       415 ~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~  494 (625)
T KOG4422|consen  415 DVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQ  494 (625)
T ss_pred             HHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHH
Confidence            99999999998877778888889999999899999999999999998775555555555555555443 1        11


Q ss_pred             H-----HHHHHHHHhh-----CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHHhc
Q 045674          550 R-----ACKILDELAP-----KGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRER----EIPGKIRTALINALRKA  614 (650)
Q Consensus       550 ~-----A~~~~~~~~~-----~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~  614 (650)
                      .     |..+++....     ...+ ++...+.++..+.+.|++++|.+++.-..+.+-    .|...+..-+.+.-...
T Consensus       495 ~~~ak~aad~~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~  574 (625)
T KOG4422|consen  495 VAFAKCAADIKEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVS  574 (625)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhc
Confidence            1     1122221111     1122 678889999999999999999999998876542    23344455677777888


Q ss_pred             CCHHHHHHHHHHHHHCCCCChh
Q 045674          615 GNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       615 g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      +....|+..++-+...+...-.
T Consensus       575 ~spsqA~~~lQ~a~~~n~~~~E  596 (625)
T KOG4422|consen  575 NSPSQAIEVLQLASAFNLPICE  596 (625)
T ss_pred             CCHHHHHHHHHHHHHcCchhhh
Confidence            9999999999999887665433

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.80  E-value=2e-15  Score=140.45  Aligned_cols=225  Identities=18%  Similarity=0.167  Sum_probs=185.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA  446 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  446 (650)
                      +.-.|+...|...|+..+.....++. .|..+..+|...++.++.+..|......++. +..+|..-.+++.-.+++++|
T Consensus       336 ~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A  413 (606)
T KOG0547|consen  336 HFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEA  413 (606)
T ss_pred             hhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHH
Confidence            44578888999999998876444332 2666777799999999999999999998877 777888888888889999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      ..-|++.+... |.+...|..+..+..+.+++++++..|++.++. ++..+..|+.....+...+++++|.+.|+.+++.
T Consensus       414 ~aDF~Kai~L~-pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L  491 (606)
T KOG0547|consen  414 IADFQKAISLD-PENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL  491 (606)
T ss_pred             HHHHHHHhhcC-hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence            99999999875 667778888888888999999999999999987 3447788999999999999999999999999875


Q ss_pred             CCC-----CCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          527 GIT-----PTAASF--RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       527 ~~~-----p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ...     .+...+  ..++. +.-.+++.+|.++++++.+.+|....++..|+....+.|+.++|+++|++.....
T Consensus       492 E~~~~~~~v~~~plV~Ka~l~-~qwk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA  567 (606)
T KOG0547|consen  492 EPREHLIIVNAAPLVHKALLV-LQWKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA  567 (606)
T ss_pred             ccccccccccchhhhhhhHhh-hchhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence            322     122222  12221 2234899999999999999999999999999999999999999999999988664

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.79  E-value=1e-15  Score=142.26  Aligned_cols=421  Identities=12%  Similarity=0.030  Sum_probs=273.0

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-hhhHHHHHHHHHH
Q 045674          187 SLIKSFGGLGMVEELLWVWRSMKENGIEPS-LYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD-VVTYNTMIKGYCK  264 (650)
Q Consensus       187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  264 (650)
                      ....-|.++|.+++|+++|.+.+..  .|+ ...|.....+|...|+++++.+-..+.++.  .|+ +.++..-..++-.
T Consensus       120 ~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl--~P~Y~KAl~RRA~A~E~  195 (606)
T KOG0547|consen  120 TKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALEL--NPDYVKALLRRASAHEQ  195 (606)
T ss_pred             hhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhc--CcHHHHHHHHHHHHHHh
Confidence            3445567888888888888888875  455 677788888888888888888888777765  343 5667777777777


Q ss_pred             cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CC--CCCCHHHHHHHHHHHHhcCChHHH
Q 045674          265 VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE-KG--IEIPSHAYNLVIGGLCKVGKCIEG  341 (650)
Q Consensus       265 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~--~~~~~~~~~~l~~~~~~~g~~~~a  341 (650)
                      .|++++|+.=+.-..-.+--.|..+--.+=+.+-+     .|..-.++-.+ .+  .-|......+....+...-  .  
T Consensus       196 lg~~~eal~D~tv~ci~~~F~n~s~~~~~eR~Lkk-----~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~--~--  266 (606)
T KOG0547|consen  196 LGKFDEALFDVTVLCILEGFQNASIEPMAERVLKK-----QAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP--K--  266 (606)
T ss_pred             hccHHHHHHhhhHHHHhhhcccchhHHHHHHHHHH-----HHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc--c--
Confidence            88887776433322211111121111111111111     12222222222 11  1122222222222111000  0  


Q ss_pred             HHHHHHHHHcCCCcCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHC---CCC---CC------HHhHHHHHHHHHhcCCH
Q 045674          342 HAIFESMIRRGCQPNVAIYTALIDSYAKL-GSMNEAINIFERMKYE---GVE---PD------EVTYGVIISGLCKNERL  408 (650)
Q Consensus       342 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~---~~~---p~------~~~~~~l~~~~~~~g~~  408 (650)
                          ..+...+...|...-..+-..+... ..+.+|...+.+-...   ...   .|      ..+.......+.-.|+.
T Consensus       267 ----~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~  342 (606)
T KOG0547|consen  267 ----PLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDS  342 (606)
T ss_pred             ----ccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCc
Confidence                0000000000111111111111110 1233333333322110   000   01      11222223335557899


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      -.|..-|+..+...+.++ ..|-.+..+|....+.++....|+.....+ +.++.+|...++++.-.+++++|..-|++.
T Consensus       343 ~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~Ka  420 (606)
T KOG0547|consen  343 LGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQKA  420 (606)
T ss_pred             hhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999877644 337778888999999999999999999986 788999999999999999999999999999


Q ss_pred             HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----
Q 045674          489 EDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII----  564 (650)
Q Consensus       489 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----  564 (650)
                      +...+. +...|..+..+..+.++++++...|++.++.- +..++.|+..+..+..++++++|.+.|+.+++..+.    
T Consensus       421 i~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkkF-P~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~  498 (606)
T KOG0547|consen  421 ISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKKF-PNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLI  498 (606)
T ss_pred             hhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-CCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccc
Confidence            998655 77788888888889999999999999999874 337789999999999999999999999999987665    


Q ss_pred             --cHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          565 --PETAF--EDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       565 --~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                        +...+  ..++..-+ .+++.+|+++++++++.+ |....++..++....+.|+.++|+++|++....
T Consensus       499 ~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa~l  566 (606)
T KOG0547|consen  499 IVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSAQL  566 (606)
T ss_pred             cccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence              22222  22333333 489999999999999987 667788999999999999999999999987654

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.79  E-value=2e-14  Score=132.96  Aligned_cols=296  Identities=13%  Similarity=0.076  Sum_probs=180.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHhHHHHHHHHHhc
Q 045674          328 VIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVE--PDEVTYGVIISGLCKN  405 (650)
Q Consensus       328 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~  405 (650)
                      +..++-...+.+++..-.+.....|+..+...-+..+.+.....|+++|+.+|+++.+...-  -|..+|+.++  |.+.
T Consensus       233 ~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~L--Yv~~  310 (559)
T KOG1155|consen  233 LKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVL--YVKN  310 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHH--HHHh
Confidence            33444555566666666666666666655555555555566667777777777777665110  1445666655  3333


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF  485 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (650)
                      .+-.  +..+.+-...--+.-..|+..+++-|+-.++.++|...|++.++.+ |.....|..+++-|....+...|++.+
T Consensus       311 ~~sk--Ls~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sY  387 (559)
T KOG1155|consen  311 DKSK--LSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESY  387 (559)
T ss_pred             hhHH--HHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHH
Confidence            3221  1111111100011133455566666666777777777777777765 445566677777777777777777777


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 045674          486 KRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP  565 (650)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  565 (650)
                      +.+++..+. |-..|-.|+++|.-.+.+.-|+-+|+++....+. |...|..|+.+|.+.++.++|++.|..++..+-.+
T Consensus       388 RrAvdi~p~-DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte  465 (559)
T KOG1155|consen  388 RRAVDINPR-DYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTE  465 (559)
T ss_pred             HHHHhcCch-hHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccccc
Confidence            777776443 6677777777777777777777777777765443 66677777777777777777777777777665556


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          566 ETAFEDMITCLCKTGRIKEACKLADGIVDR----E-REI-PGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~-~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ..++..|+..+-+.++.++|..+|++.++.    | ..+ ...+...|+.-+.+.+++++|..+..+++.-
T Consensus       466 ~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~  536 (559)
T KOG1155|consen  466 GSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG  536 (559)
T ss_pred             hHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC
Confidence            677777777777777777777777766652    1 111 1223333555566777777777666666554

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.78  E-value=7.6e-17  Score=156.06  Aligned_cols=290  Identities=15%  Similarity=0.127  Sum_probs=221.0

Q ss_pred             ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHhHHHHHHHHHhcCCHHHHHHH
Q 045674          337 KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV--EPDEVTYGVIISGLCKNERLEEAMQY  414 (650)
Q Consensus       337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~a~~~  414 (650)
                      +..+|...|..+... +.-...+...++.+|...+++++|.++|+.+.+...  .-+...|...+-.+-+    +-++..
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHH
Confidence            456677777774433 222345566677888888888888888888776410  1145566666533221    223333


Q ss_pred             H-HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          415 F-EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC  493 (650)
Q Consensus       415 ~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  493 (650)
                      + +.+.+.... .+.+|..++++|.-+++.+.|++.|++.+..+ +....+|+.++.-+.....+|.|...|+..+...+
T Consensus       409 Laq~Li~~~~~-sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~  486 (638)
T KOG1126|consen  409 LAQDLIDTDPN-SPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVDP  486 (638)
T ss_pred             HHHHHHhhCCC-CcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCCc
Confidence            3 344444333 77889999999999999999999999988875 45778888888888888899999999998887644


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674          494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMI  573 (650)
Q Consensus       494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  573 (650)
                      . +..+|..|+..|.+.++++.|.-.|+++.+.++. +......++..+-+.|+.++|+.+++++...++.++-.-...+
T Consensus       487 r-hYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~~  564 (638)
T KOG1126|consen  487 R-HYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHRA  564 (638)
T ss_pred             h-hhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHHH
Confidence            3 5556667788888999999999999999887655 6677778888888999999999999999998888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          574 TCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      ..+...+++++|...++++.+.- |.+..++..++..|.+.|+.+.|+.-|--+.+..+....
T Consensus       565 ~il~~~~~~~eal~~LEeLk~~v-P~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~~  626 (638)
T KOG1126|consen  565 SILFSLGRYVEALQELEELKELV-PQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGAQ  626 (638)
T ss_pred             HHHHhhcchHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccch
Confidence            89999999999999999988874 667788888999999999999999998888888777554

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=4.6e-13  Score=124.19  Aligned_cols=365  Identities=13%  Similarity=0.036  Sum_probs=267.7

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH--H
Q 045674          213 IEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT--Y  290 (650)
Q Consensus       213 ~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~--~  290 (650)
                      ...|...+-.....+.+.|..+.|+..|......- +..-.+|..|....   .+.+    ........ ...|...  -
T Consensus       160 ~~~D~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~li---t~~e----~~~~l~~~-l~~~~h~M~~  230 (559)
T KOG1155|consen  160 GEKDEFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSELI---TDIE----ILSILVVG-LPSDMHWMKK  230 (559)
T ss_pred             ccchhHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHhh---chHH----HHHHHHhc-CcccchHHHH
Confidence            34455555555556677888999999998887532 33445555554433   2222    22222222 1212111  1


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC--CcCHHHHHHHHHHHH
Q 045674          291 MTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC--QPNVAIYTALIDSYA  368 (650)
Q Consensus       291 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~  368 (650)
                      -.+..++-.....+++..-.+.....|++.....-+..+.+.....++++|+.+|+++.+...  --|..+|...+.+  
T Consensus       231 ~F~~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv--  308 (559)
T KOG1155|consen  231 FFLKKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYV--  308 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHH--
Confidence            234456666678888888888888888887777777778888889999999999999998721  1245566655533  


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      +..+  ..+.++.+-...--+--..|...+..-|.-.++.++|...|++..+.++. ....|+.+++-|....+...|++
T Consensus       309 ~~~~--skLs~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~  385 (559)
T KOG1155|consen  309 KNDK--SKLSYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIE  385 (559)
T ss_pred             Hhhh--HHHHHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHH
Confidence            3222  12222222111101223457778888888899999999999999998876 77889999999999999999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI  528 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  528 (650)
                      .++.+++.+ |.|-..|..|+++|.-.+...-|+-.|++.....+. |...|.+|+.+|.+.++.++|++.|.++...|-
T Consensus       386 sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~d  463 (559)
T KOG1155|consen  386 SYRRAVDIN-PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGD  463 (559)
T ss_pred             HHHHHHhcC-chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhccc
Confidence            999999985 889999999999999999999999999999987554 889999999999999999999999999998764


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          529 TPTAASFRALSIGLCLSGKVARACKILDELAPK----GIIP---ETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       529 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      . +...+..++..|-+.++.++|..+|++.++.    |..+   ..+..-|+.-+.+.+++++|..+......
T Consensus       464 t-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~  535 (559)
T KOG1155|consen  464 T-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLK  535 (559)
T ss_pred             c-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhc
Confidence            4 6688999999999999999999999988762    2222   33344477788889999999887776653

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.77  E-value=3.2e-18  Score=162.46  Aligned_cols=262  Identities=18%  Similarity=0.175  Sum_probs=110.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 045674          362 ALIDSYAKLGSMNEAINIFERMKYEG-VEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA  440 (650)
Q Consensus       362 ~l~~~~~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  440 (650)
                      .+...+.+.|++++|++++.+..... ...+...|..+...+...++++.|++.++++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            45777888888888888886544332 1224455566666677788888888888888877654 55666667766 688


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          441 GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEG-CDQTVYTYTILINGMFKEHRNEEALKL  519 (650)
Q Consensus       441 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~  519 (650)
                      +++++|.++++...+.  .++...+..++..+.+.++++++..+++.+.... ...+...|..++..+.+.|+.++|+++
T Consensus        91 ~~~~~A~~~~~~~~~~--~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYER--DGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             cccccccccccccccc--ccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            8888888888877665  3566777778888888899999988888876532 245777788888888889999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          520 WDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI  599 (650)
Q Consensus       520 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  599 (650)
                      ++++++..+. |......+++.+...|+.+++.++++...+..+.++..+..++.++...|+.++|+.+++++.+.+ +.
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~  246 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PD  246 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-cc
Confidence            9999886544 677788888888888999988888888877766677888889999999999999999999988876 77


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          600 PGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      |+.+...++.++...|+.++|.++.+++.+
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            888888999999999999999998888765

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.77  E-value=2.1e-14  Score=136.34  Aligned_cols=471  Identities=12%  Similarity=0.007  Sum_probs=278.9

Q ss_pred             HHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcC
Q 045674          116 FVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGL  195 (650)
Q Consensus       116 ~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  195 (650)
                      ++++-+..+.++..|+-+.+.+..   ...++..-..++.++.-.|+++.|..+...-.-.  ..+..........+.+.
T Consensus        21 ~~~r~~l~q~~y~~a~f~adkV~~---l~~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~~l~~l   95 (611)
T KOG1173|consen   21 RLVRDALMQHRYKTALFWADKVAG---LTNDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAKCLVKL   95 (611)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHh---ccCChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHHHHHHH
Confidence            333433444556666655554443   3345555667788888888888887776554322  34677777777788888


Q ss_pred             CCHHHHHHHHHHHHHC--CCCCCHHH----------------------HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC
Q 045674          196 GMVEELLWVWRSMKEN--GIEPSLYT----------------------YNFLMNGLVNSMFIESSELVFKVMENGKVGPD  251 (650)
Q Consensus       196 g~~~~a~~~~~~~~~~--~~~~~~~~----------------------~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~  251 (650)
                      .++++|..++.+....  .+.-+..+                      +..-...|....+.++|...+.+.+.    .|
T Consensus        96 k~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~----~D  171 (611)
T KOG1173|consen   96 KEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALL----AD  171 (611)
T ss_pred             HHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHh----cc
Confidence            8888888877732100  00000000                      00111223344455666666666553    23


Q ss_pred             hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          252 VVTYNTMIKGYCKVGKTQKAMEKFRAMEARN----VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNL  327 (650)
Q Consensus       252 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  327 (650)
                      ...+..+...-...  .-.+.+.++.+...+    ..-+......+.........-+.....-.+..-.+...+......
T Consensus       172 ~~c~Ea~~~lvs~~--mlt~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~  249 (611)
T KOG1173|consen  172 AKCFEAFEKLVSAH--MLTAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAE  249 (611)
T ss_pred             hhhHHHHHHHHHHH--hcchhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHH
Confidence            43333332221111  111111122221110    011122222222111000000000000000111122335556666


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC
Q 045674          328 VIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNER  407 (650)
Q Consensus       328 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  407 (650)
                      ...-+...+++.+..++++.+.+. .++....+..-|.++...|+..+-..+=.++.+.- +-...+|-++..-|...|+
T Consensus       250 ~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~aVg~YYl~i~k  327 (611)
T KOG1173|consen  250 KADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFAVGCYYLMIGK  327 (611)
T ss_pred             HHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhhHHHHHHHhcC
Confidence            677777788888888888888776 23344445555567777787777777767777652 2246678888887888888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR  487 (650)
Q Consensus       408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (650)
                      ..+|.+.|.+....+.. -...|-.++..|.-.+..|+|+..+..+.+. ++-...-+..++.-|.+.++++.|.+.|.+
T Consensus       328 ~seARry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~  405 (611)
T KOG1173|consen  328 YSEARRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQ  405 (611)
T ss_pred             cHHHHHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHH
Confidence            88888888877665544 3345777788888888888888888777664 222222334455567778888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          488 MEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GIT--PTAASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       488 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      .....+ .|+..++-++......+.+.+|..+|+..+..    +.+  --..+++.|+.++.+.+++++|+..+++++..
T Consensus       406 A~ai~P-~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l  484 (611)
T KOG1173|consen  406 ALAIAP-SDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLL  484 (611)
T ss_pred             HHhcCC-CcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHc
Confidence            877643 37777777777777788888888888877621    111  13446788888888888888888888888888


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR  604 (650)
Q Consensus       562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  604 (650)
                      .+.+..++..++.++...|+++.|++.|.+++-..  |+..+.
T Consensus       485 ~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~--p~n~~~  525 (611)
T KOG1173|consen  485 SPKDASTHASIGYIYHLLGNLDKAIDHFHKALALK--PDNIFI  525 (611)
T ss_pred             CCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcC--CccHHH
Confidence            88888888888888888888888888888888654  544333

>TIGR00540 hemY_coli hemY protein

Probab=99.76  E-value=8.5e-15  Score=146.24  Aligned_cols=292  Identities=12%  Similarity=0.053  Sum_probs=191.6

Q ss_pred             HhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHH
Q 045674          333 CKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE--VTYGVIISGLCKNERLE  409 (650)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~  409 (650)
                      ...|+++.|.+.+....+..  |+ ...+-....++.+.|+++.|..++.+..+.  .|+.  .........+...|+++
T Consensus        95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~--~p~~~l~~~~~~a~l~l~~~~~~  170 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAEL--AGNDNILVEIARTRILLAQNELH  170 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCcCchHHHHHHHHHHHHCCCHH
Confidence            35677777777776666542  33 233334456666777888888887777654  2333  22333456677778888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHH---HHHHcCCHHHHHHHH
Q 045674          410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV-LID---ALAKCGKLDEALALF  485 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~---~~~~~g~~~~A~~~~  485 (650)
                      .|...++.+.+..+. +..++..+...+...|++++|.+.+..+.+.+.. +...+.. ...   .+...+..+++.+.+
T Consensus       171 ~Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L  248 (409)
T TIGR00540       171 AARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGL  248 (409)
T ss_pred             HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHH
Confidence            888888887777655 6667777777788888888888888887776532 3332211 111   112223333333445


Q ss_pred             HHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          486 KRMEDEGCD---QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASF-RALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       486 ~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      ..+.+..+.   .+...+..++..+...|++++|.+++++..+..+......+ ..........++.+.+.+.+++..+.
T Consensus       249 ~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~  328 (409)
T TIGR00540       249 LNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN  328 (409)
T ss_pred             HHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh
Confidence            544443221   26777777888888888888888888888876443221111 11112223457788888888888888


Q ss_pred             CCCcH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          562 GIIPE--TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       562 ~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .|.++  .....+++.+.+.|++++|.+.|+++......|+...+..++..+.+.|+.++|.+++++.++.
T Consensus       329 ~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       329 VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            88888  7888889999999999999999985333233577777888888899999999999998887653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.76  E-value=1.7e-14  Score=143.18  Aligned_cols=285  Identities=9%  Similarity=0.003  Sum_probs=214.4

Q ss_pred             cCChHHHHHHHHHHHHcCCCcCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH--HHHHHHHhcCCHHHH
Q 045674          335 VGKCIEGHAIFESMIRRGCQPNVAIYTAL-IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG--VIISGLCKNERLEEA  411 (650)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~--~l~~~~~~~g~~~~a  411 (650)
                      .|+++.|++.+....+..  ++...+..+ .....+.|+++.|..++.++.+.  .|+.....  .....+...|++++|
T Consensus        97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~A  172 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAA  172 (398)
T ss_pred             CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHH
Confidence            688888887777655542  123333333 44447888899999999888765  44543222  335677888999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHH
Q 045674          412 MQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS-------YCYNVLIDALAKCGKLDEALAL  484 (650)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~  484 (650)
                      ...++.+.+..+. +...+..+...|.+.|++++|.+++..+.+.+..++.       ..|..++.......+.+...++
T Consensus       173 l~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~  251 (398)
T PRK10747        173 RHGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRW  251 (398)
T ss_pred             HHHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHH
Confidence            9999888888766 7778888888899999999999999888887533222       1222333333344455666666


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      ++.+.+. .+.+......+...+...|+.++|.+++++..+.  .++.....  +.+....++.+++++.+++..+..|.
T Consensus       252 w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l~~--l~~~l~~~~~~~al~~~e~~lk~~P~  326 (398)
T PRK10747        252 WKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERLVL--LIPRLKTNNPEQLEKVLRQQIKQHGD  326 (398)
T ss_pred             HHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHH--HHhhccCCChHHHHHHHHHHHhhCCC
Confidence            6666443 2347788888999999999999999999999884  44554332  23344569999999999999999999


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          565 PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  631 (650)
                      ++..+..++..+.+.|++++|.+.|+++++.  .|+...+..++.++.+.|+.++|.+.+++.+..-
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~  391 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLMLT  391 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            9999999999999999999999999999986  5888888899999999999999999999988753

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.75  E-value=8.8e-14  Score=132.23  Aligned_cols=473  Identities=12%  Similarity=0.025  Sum_probs=322.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN  225 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  225 (650)
                      +..-+..+.+-+..+.++..|.-+-+++...+  .++...-.++..+.-.|++++|..+...-.-.  ..|..+......
T Consensus        15 s~~~~~~~~r~~l~q~~y~~a~f~adkV~~l~--~dp~d~~~~aq~l~~~~~y~ra~~lit~~~le--~~d~~cryL~~~   90 (611)
T KOG1173|consen   15 SLEKYRRLVRDALMQHRYKTALFWADKVAGLT--NDPADIYWLAQVLYLGRQYERAAHLITTYKLE--KRDIACRYLAAK   90 (611)
T ss_pred             cHHHHHHHHHHHHHHHhhhHHHHHHHHHHhcc--CChHHHHHHHHHHHhhhHHHHHHHHHHHhhhh--hhhHHHHHHHHH
Confidence            34445556666667778888888888887665  35555566888888889999998887765432  346777777778


Q ss_pred             HHHhcCChhHHHHHHHHHhc--CC-----------CCCChh-----------hHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 045674          226 GLVNSMFIESSELVFKVMEN--GK-----------VGPDVV-----------TYNTMIKGYCKVGKTQKAMEKFRAMEAR  281 (650)
Q Consensus       226 ~~~~~~~~~~A~~~~~~~~~--~~-----------~~~~~~-----------~~~~l~~~~~~~g~~~~A~~~~~~~~~~  281 (650)
                      ++.+..+++.|..++.....  ..           +.+|..           .+-.-...|....+.++|...|.+....
T Consensus        91 ~l~~lk~~~~al~vl~~~~~~~~~f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al~n~~~ar~~Y~~Al~~  170 (611)
T KOG1173|consen   91 CLVKLKEWDQALLVLGRGHVETNPFSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVALDNREEARDKYKEALLA  170 (611)
T ss_pred             HHHHHHHHHHHHHHhcccchhhcchhhcchhhhceeccCcccccccccchhceeeeeeehhhhhccHHHHHHHHHHHHhc
Confidence            88999999999888872210  00           011110           0111123444556677777777776654


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH
Q 045674          282 NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI----EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV  357 (650)
Q Consensus       282 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  357 (650)
                      ++. .-..+..|+....-     .+.+.++.+.....    ..+......+.....-...-++....-++..-.+..-+.
T Consensus       171 D~~-c~Ea~~~lvs~~ml-----t~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~  244 (611)
T KOG1173|consen  171 DAK-CFEAFEKLVSAHML-----TAQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENL  244 (611)
T ss_pred             chh-hHHHHHHHHHHHhc-----chhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcH
Confidence            221 22222222222211     11122222221110    111122222222111010001111111111111233355


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGL  437 (650)
Q Consensus       358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (650)
                      .........+...+++.+..++.+.+.+.. .+....+..-|.++...|+..+-..+=.++.+..+. ...+|-+++--|
T Consensus       245 dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~aVg~YY  322 (611)
T KOG1173|consen  245 DLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFAVGCYY  322 (611)
T ss_pred             HHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhhHHHHH
Confidence            666667777888999999999999998752 334445555566888889888877777888887665 778888898888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEAL  517 (650)
Q Consensus       438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  517 (650)
                      ...|+..+|.+.|.+....+ +.-...|..++..|.-.|..|+|+..+..+-+.-.. ...-+-.++.-|.+.+..+.|.
T Consensus       323 l~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G-~hlP~LYlgmey~~t~n~kLAe  400 (611)
T KOG1173|consen  323 LMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPG-CHLPSLYLGMEYMRTNNLKLAE  400 (611)
T ss_pred             HHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccC-CcchHHHHHHHHHHhccHHHHH
Confidence            89999999999999988865 445678999999999999999999999988774211 2222344566688899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----C---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI----I---PETAFEDMITCLCKTGRIKEACKLAD  590 (650)
Q Consensus       518 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~---~~~~~~~l~~~~~~~g~~~~A~~~~~  590 (650)
                      ++|.++....+. |+..++.++-+....+.+.+|..+|+.++..-.    .   -..+++.||+++.+.+++++|+..++
T Consensus       401 ~Ff~~A~ai~P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q  479 (611)
T KOG1173|consen  401 KFFKQALAIAPS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQ  479 (611)
T ss_pred             HHHHHHHhcCCC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHH
Confidence            999999876544 778889999888999999999999999883211    1   23458999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          591 GIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      +++... +.+..++..++-.|...|+++.|++.|++++...+..
T Consensus       480 ~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n  522 (611)
T KOG1173|consen  480 KALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDN  522 (611)
T ss_pred             HHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCcc
Confidence            999986 8899999999999999999999999999999987775

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.73  E-value=1.3e-15  Score=147.71  Aligned_cols=285  Identities=14%  Similarity=0.075  Sum_probs=228.3

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          302 DFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG--CQPNVAIYTALIDSYAKLGSMNEAINI  379 (650)
Q Consensus       302 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~  379 (650)
                      +..+|...|..+... +.....+...+..+|...+++++|+++|+.+.+..  ..-+..+|.+.+.-+-+.    -++.+
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~  408 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY  408 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence            456777777774443 33344666677788888888888888888777652  112455666665543221    12222


Q ss_pred             H-HHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          380 F-ERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC  458 (650)
Q Consensus       380 ~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  458 (650)
                      + +.+.+. -+-.+.+|..+..+|.-+++.+.|++.|++..+.++. ...+|+.+..-+.....+|.|...|+..+... 
T Consensus       409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~-  485 (638)
T KOG1126|consen  409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVD-  485 (638)
T ss_pred             HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCC-
Confidence            2 222222 1335789999999999999999999999999987655 77889999999999999999999999999875 


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL  538 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  538 (650)
                      +.+...|+.++..|.+.++++.|+-.|+++.+.++. +.+....++..+.+.|+.++|+++++++....+. |+..-...
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~  563 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR  563 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence            667788999999999999999999999999998765 7777888888899999999999999999987666 66666667


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +..+.-.+++++|+..++++.+.-|++..++..++..|.+.|+.+.|+.-|--+.+.+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ld  621 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLD  621 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence            7788889999999999999999989999999999999999999999999999999876

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.72  E-value=4.4e-17  Score=154.68  Aligned_cols=262  Identities=18%  Similarity=0.184  Sum_probs=110.0

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcC-CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674          327 LVIGGLCKVGKCIEGHAIFESMIRRG-CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKN  405 (650)
Q Consensus       327 ~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  405 (650)
                      .+...+.+.|++++|.++++...... ...+...|..+.......++++.|...|+++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            45667777778888888776554443 2334455555666777788888888888888765433 44456666655 678


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALAL  484 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~  484 (650)
                      +++++|.++++...+..  ++...+..++..+...++++++..+++.+.... .+.+...|..++..+.+.|+.++|++.
T Consensus        91 ~~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~  168 (280)
T PF13429_consen   91 GDPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRD  168 (280)
T ss_dssp             -----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHH
T ss_pred             ccccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            88888888887665543  355566777788888889999888888876532 346777888888889999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      +++.++..+. |....+.++..+...|+.+++.++++...+.. ..|...+..++.++...|+.++|+.+++++.+..|.
T Consensus       169 ~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~  246 (280)
T PF13429_consen  169 YRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPD  246 (280)
T ss_dssp             HHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccccccccccccccccc
Confidence            9999887544 67778888888888899998888888877653 335567778889999999999999999999998888


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          565 PETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      |+.+...++.++...|+.++|.++.+++.+
T Consensus       247 d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  247 DPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             -HHHHHHHHHHHT-----------------
T ss_pred             cccccccccccccccccccccccccccccc
Confidence            999999999999999999999999888764

>TIGR00540 hemY_coli hemY protein

Probab=99.72  E-value=9.5e-14  Score=138.75  Aligned_cols=292  Identities=12%  Similarity=0.063  Sum_probs=186.0

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          299 LEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAIN  378 (650)
Q Consensus       299 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  378 (650)
                      ..|+++.|.+.+....+.... +...+......+.+.|+.+.|.+.+.++.+....+...........+...|++++|..
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~-~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~  174 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAE-PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARH  174 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHH
Confidence            456666666666655544211 2233334455566666667777666666554222222233334666666777777777


Q ss_pred             HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHH---HHHcCCHHHHHHHHHHHH
Q 045674          379 IFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS-SLIDG---LGKAGRVDEAEELFEEMV  454 (650)
Q Consensus       379 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~l~~~---~~~~~~~~~A~~~~~~~~  454 (650)
                      .++.+.+.... +...+..+...+...|++++|.+.+..+.+.+.. +...+. ....+   ....+..+++.+.+..+.
T Consensus       175 ~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~  252 (409)
T TIGR00540       175 GVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWW  252 (409)
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            77777665322 4456666666777777777777777777766543 222221 11111   122223333344555544


Q ss_pred             HcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          455 EKG---CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT-YTILINGMFKEHRNEEALKLWDMMIDKGITP  530 (650)
Q Consensus       455 ~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p  530 (650)
                      +..   .+.+...+..++..+...|++++|.+++++..+..++..... ...........++.+.+.+.+++..+..+. 
T Consensus       253 ~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~-  331 (409)
T TIGR00540       253 KNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDD-  331 (409)
T ss_pred             HHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCC-
Confidence            432   124788888899999999999999999999988754422111 122222234467888999999998876444 


Q ss_pred             CH--HHHHHHHHHHHhcCCHHHHHHHHHH--HhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          531 TA--ASFRALSIGLCLSGKVARACKILDE--LAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       531 ~~--~~~~~l~~~~~~~g~~~~A~~~~~~--~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      |.  ....++++.+.+.|++++|.++|+.  +.+..|+ ...+.+++.++.+.|+.++|.++|++.+..
T Consensus       332 ~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~-~~~~~~La~ll~~~g~~~~A~~~~~~~l~~  399 (409)
T TIGR00540       332 KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLD-ANDLAMAADAFDQAGDKAEAAAMRQDSLGL  399 (409)
T ss_pred             ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            55  6778999999999999999999994  5556554 444669999999999999999999997653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.71  E-value=2.2e-13  Score=135.29  Aligned_cols=285  Identities=11%  Similarity=0.064  Sum_probs=197.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH--HHHHHHHHHHhcCCHHHHH
Q 045674          300 EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVA--IYTALIDSYAKLGSMNEAI  377 (650)
Q Consensus       300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~  377 (650)
                      .|++++|++.+....+.... ....|........+.|+++.|...+.++.+.  .|+..  ........+...|++++|.
T Consensus        97 eGd~~~A~k~l~~~~~~~~~-p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQ-PVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccc-hHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            57777777666654443211 1222333344446777777777777777665  33332  2223356677778888888


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHH
Q 045674          378 NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA-------MFYSSLIDGLGKAGRVDEAEELF  450 (650)
Q Consensus       378 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~  450 (650)
                      ..++++.+.... +...+..+...|.+.|++++|.+++..+.+.+...+.       ..|..++.......+.+...+++
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            888887766322 4566777777788888888888888877776544222       12223333333444556666666


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          451 EEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP  530 (650)
Q Consensus       451 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p  530 (650)
                      +.+.+. .+.++.....++..+...|+.++|.+++++..+.  .++...  .++.+....++.+++++..+...+..+. 
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk~~P~-  326 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIKQHGD-  326 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence            666444 3568888889999999999999999999988885  334432  2334445669999999999999887655 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      |...+..+++.+.+.|++++|.+.|+.+.+..|.+ ..+..++.++.+.|+.++|.++|++.+..
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~~  390 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA-YDYAWLADALDRLHKPEEAAAMRRDGLML  390 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            77788899999999999999999999999886653 44667899999999999999999988764

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.70  E-value=4.5e-11  Score=115.56  Aligned_cols=510  Identities=12%  Similarity=0.091  Sum_probs=318.3

Q ss_pred             HHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-
Q 045674           99 DSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG-  177 (650)
Q Consensus        99 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-  177 (650)
                      +.-+++...+.....-...++-....+-|+-++.++++..+.     ++..-.-.+..+.+.+++++|.+.+..++... 
T Consensus       126 drALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~-----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~  200 (835)
T KOG2047|consen  126 DRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV-----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDE  200 (835)
T ss_pred             HHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc-----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchh
Confidence            333333344444444444555555566778888888877664     33445667788888899999988888775331 


Q ss_pred             -----CCCCHHHHHHHHHHHHcCCCHHH---HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 045674          178 -----FLMTVSAANSLIKSFGGLGMVEE---LLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVG  249 (650)
Q Consensus       178 -----~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~  249 (650)
                           .+.+...|..+-....++.+.-.   ...+++.+...-.+.-...|.+|...|++.|.++.|..++++....  .
T Consensus       201 f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v  278 (835)
T KOG2047|consen  201 FVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--V  278 (835)
T ss_pred             hhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--h
Confidence                 24556677777776666544322   2233444443322223457888888999999999999999887754  2


Q ss_pred             CChhhHHHHHHHHHHcCC----------------------hhHHHHHHHHHHhCCC-----------CCCHHHHHHHHHH
Q 045674          250 PDVVTYNTMIKGYCKVGK----------------------TQKAMEKFRAMEARNV-----------QPDKITYMTLIQA  296 (650)
Q Consensus       250 ~~~~~~~~l~~~~~~~g~----------------------~~~A~~~~~~~~~~~~-----------~~~~~~~~~l~~~  296 (650)
                      ..+.-|..+.+.|....+                      ++-...-|+.+...+.           +.++..|..-+  
T Consensus       279 ~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV--  356 (835)
T KOG2047|consen  279 MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRV--  356 (835)
T ss_pred             eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhh--
Confidence            334444444444443211                      1122233333332210           11222332222  


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC---HHHHHHHHHHH
Q 045674          297 CYLEGDFDSCLSLYHEMDEKGIEI------PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN---VAIYTALIDSY  367 (650)
Q Consensus       297 ~~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~  367 (650)
                      -+..|+..+-...|.+.... +.|      ....|..+...|-..|+++.|..+|++..+-..+--   ..+|...+.+-
T Consensus       357 ~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemE  435 (835)
T KOG2047|consen  357 KLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEME  435 (835)
T ss_pred             hhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHH
Confidence            22356667777777776653 111      234677888899999999999999999887643322   34677777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC----------C-------CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674          368 AKLGSMNEAINIFERMKYEGVE----------P-------DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFY  430 (650)
Q Consensus       368 ~~~~~~~~A~~~~~~~~~~~~~----------p-------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  430 (650)
                      .+..+++.|++++++.....-.          |       +...|...++..-..|-++....+|+++.+..+. ++...
T Consensus       436 lrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii  514 (835)
T KOG2047|consen  436 LRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQII  514 (835)
T ss_pred             HhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHH
Confidence            7888899999988876532111          1       2234555566566678888888899988887665 44444


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-SYCYNVLIDALAK---CGKLDEALALFKRMEDEGCDQTVYTYTILING  506 (650)
Q Consensus       431 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  506 (650)
                      ...+..+-...-++++.+++++-+..--.|+ ..+|+..+.-+.+   ..+++.|..+|++.++ |++|...-+..|+.+
T Consensus       515 ~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA  593 (835)
T KOG2047|consen  515 INYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYA  593 (835)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH
Confidence            4455555666778899998888776532343 3567776666554   2468899999999998 666655444444433


Q ss_pred             HH--hcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcC
Q 045674          507 MF--KEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTG  580 (650)
Q Consensus       507 ~~--~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g  580 (650)
                      -.  +.|-...|+.+++++... +++..  ..|+..+.--...=-+.....+|+++++.-|.  ..+.....++.-++.|
T Consensus       594 ~lEEe~GLar~amsiyerat~~-v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklG  672 (835)
T KOG2047|consen  594 KLEEEHGLARHAMSIYERATSA-VKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLG  672 (835)
T ss_pred             HHHHHhhHHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhh
Confidence            22  568888999999997653 33322  34554443332222344566788888876454  2345556778888999


Q ss_pred             CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHH
Q 045674          581 RIKEACKLADGIVDREREI--PGKIRTALINALRKAGNADLAIK  622 (650)
Q Consensus       581 ~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~  622 (650)
                      ..+.|..+|....+.- +|  +...|...-..-.++|+-+--.+
T Consensus       673 EidRARaIya~~sq~~-dPr~~~~fW~twk~FEvrHGnedT~ke  715 (835)
T KOG2047|consen  673 EIDRARAIYAHGSQIC-DPRVTTEFWDTWKEFEVRHGNEDTYKE  715 (835)
T ss_pred             hHHHHHHHHHhhhhcC-CCcCChHHHHHHHHHHHhcCCHHHHHH
Confidence            9999999998887763 33  57788888777888998443333

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.66  E-value=1.9e-14  Score=127.12  Aligned_cols=235  Identities=11%  Similarity=0.044  Sum_probs=208.6

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL  472 (650)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (650)
                      .--+.+.++|.+.|.+.+|.+.++...+...  -..||..|...|.+..+.+.|+.++.+.++. +|-|+.....+.+.+
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~--~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~  300 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFP--HPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhcCC--chhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHH
Confidence            3346788999999999999999998888754  4557788899999999999999999999987 577777778889999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ...++.++|.++++...+.... ++....++...|.-.++++-|+.+++++++.|+. +...|..++-+|...++++-++
T Consensus       301 eam~~~~~a~~lYk~vlk~~~~-nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLHPI-NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcCCc-cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence            9999999999999999987543 7777778888899999999999999999999988 8999999999999999999999


Q ss_pred             HHHHHHhhCCC--C-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          553 KILDELAPKGI--I-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       553 ~~~~~~~~~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .-|+++...-.  . -.++|.+++.+....|++.-|.+.|+-++..+ +.+.+.++.|+-.-.+.|+.++|+.+++.+..
T Consensus       379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~i~~Arsll~~A~s  457 (478)
T KOG1129|consen  379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGDILGARSLLNAAKS  457 (478)
T ss_pred             HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCchHHHHHHHHHhhh
Confidence            99999986533  2 57899999999999999999999999999887 77889999999999999999999999999998


Q ss_pred             CCCC
Q 045674          630 VGYD  633 (650)
Q Consensus       630 ~~~~  633 (650)
                      ..|.
T Consensus       458 ~~P~  461 (478)
T KOG1129|consen  458 VMPD  461 (478)
T ss_pred             hCcc
Confidence            8765

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=99.66  E-value=2.7e-10  Score=110.36  Aligned_cols=493  Identities=11%  Similarity=0.073  Sum_probs=285.5

Q ss_pred             CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674          123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL  202 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  202 (650)
                      .+++.......|+.+.+.-........|...+...-..|-++-+..++++.++.    ++..-+-.+..++..++.++|.
T Consensus       114 ~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~L~~~d~~~eaa  189 (835)
T KOG2047|consen  114 KQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEYLAKSDRLDEAA  189 (835)
T ss_pred             hcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHHHHhccchHHHH
Confidence            344555555555555444323333345556666666666777777777777754    4444566667777777777777


Q ss_pred             HHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChh---HHHHHHHHHhcCCCCCC--hhhHHHHHHHHHHcCChhHH
Q 045674          203 WVWRSMKENG------IEPSLYTYNFLMNGLVNSMFIE---SSELVFKVMENGKVGPD--VVTYNTMIKGYCKVGKTQKA  271 (650)
Q Consensus       203 ~~~~~~~~~~------~~~~~~~~~~ll~~~~~~~~~~---~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A  271 (650)
                      +.+.......      .+.+...|.-+....++.-+.-   ....+++.++..  -+|  -..|+.|.+.|.+.|.+++|
T Consensus       190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~r--ftDq~g~Lw~SLAdYYIr~g~~eka  267 (835)
T KOG2047|consen  190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRR--FTDQLGFLWCSLADYYIRSGLFEKA  267 (835)
T ss_pred             HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhccc--CcHHHHHHHHHHHHHHHHhhhhHHH
Confidence            7776665321      2334455555555555443322   233444444432  233  34678888888888888888


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcC----------------------CHHHHHHHHHHHHHCCC-----------
Q 045674          272 MEKFRAMEARNVQPDKITYMTLIQACYLEG----------------------DFDSCLSLYHEMDEKGI-----------  318 (650)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----------------------~~~~a~~~~~~~~~~~~-----------  318 (650)
                      .++|++....  ..+..-|..+...|..-.                      +++-.+.-|+.+.....           
T Consensus       268 rDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn  345 (835)
T KOG2047|consen  268 RDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQN  345 (835)
T ss_pred             HHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcC
Confidence            8888877654  223334444444443211                      11222233333332210           


Q ss_pred             CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-
Q 045674          319 EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN------VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD-  391 (650)
Q Consensus       319 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-  391 (650)
                      +.++..|..  +.-+..|+..+-...+.+++.. +.|.      ...|..+...|...|+.+.|..+|++..+-...-- 
T Consensus       346 ~~nV~eW~k--RV~l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~  422 (835)
T KOG2047|consen  346 PHNVEEWHK--RVKLYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVE  422 (835)
T ss_pred             CccHHHHHh--hhhhhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchH
Confidence            001111111  1123345566666777777654 2222      23567778888888888888888888776433211 


Q ss_pred             --HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------------CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          392 --EVTYGVIISGLCKNERLEEAMQYFEFCRANGVA-----------------VNAMFYSSLIDGLGKAGRVDEAEELFEE  452 (650)
Q Consensus       392 --~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~  452 (650)
                        ..+|......-.+..+++.|+++++......-.                 -+...|...+...-..|-++....+++.
T Consensus       423 dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdr  502 (835)
T KOG2047|consen  423 DLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDR  502 (835)
T ss_pred             HHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence              335555566666777888888877765432111                 0234456666666667788888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCC
Q 045674          453 MVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV-YTYTILINGMFK---EHRNEEALKLWDMMIDKGI  528 (650)
Q Consensus       453 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~  528 (650)
                      ++... -.++.+....+..+..+.-++++.+++++-+..-..|++ ..|+..+..+.+   ....+.|..+|+++++ |.
T Consensus       503 iidLr-iaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~C  580 (835)
T KOG2047|consen  503 IIDLR-IATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GC  580 (835)
T ss_pred             HHHHh-cCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cC
Confidence            88764 245555555566666677788888888877665444554 356665555542   3467888889988888 45


Q ss_pred             CCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---
Q 045674          529 TPTAASFR--ALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG---  601 (650)
Q Consensus       529 ~p~~~~~~--~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---  601 (650)
                      +|...-+.  ..+..--+.|....|+.+++++...-..  --..|+..+.--...=-...-..+|+++++.  -|+.   
T Consensus       581 pp~~aKtiyLlYA~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~~TR~iYekaIe~--Lp~~~~r  658 (835)
T KOG2047|consen  581 PPEHAKTIYLLYAKLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVPRTREIYEKAIES--LPDSKAR  658 (835)
T ss_pred             CHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHh--CChHHHH
Confidence            55543222  2223334568888888888887755322  2345554443222222234456777777765  2333   


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          602 KIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .....++..-.+.|..+.|+.+|.-..+.
T Consensus       659 ~mclrFAdlEtklGEidRARaIya~~sq~  687 (835)
T KOG2047|consen  659 EMCLRFADLETKLGEIDRARAIYAHGSQI  687 (835)
T ss_pred             HHHHHHHHHhhhhhhHHHHHHHHHhhhhc
Confidence            34456677778899999999998876664

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.65  E-value=1.2e-11  Score=110.77  Aligned_cols=479  Identities=11%  Similarity=0.039  Sum_probs=278.2

Q ss_pred             hccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHH
Q 045674          120 NHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVE  199 (650)
Q Consensus       120 ~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  199 (650)
                      -....+++..|..+++....... +....+-..++.++...|++++|...+..+.+.. .++...+..|.-.+.-.|.+.
T Consensus        31 dfls~rDytGAislLefk~~~~~-EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y~  108 (557)
T KOG3785|consen   31 DFLSNRDYTGAISLLEFKLNLDR-EEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQYI  108 (557)
T ss_pred             HHHhcccchhHHHHHHHhhccch-hhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHHH
Confidence            33456678888888887654332 2222344457778888888888888888887764 556666777777777788888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHH
Q 045674          200 ELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAME  279 (650)
Q Consensus       200 ~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  279 (650)
                      +|..+-.+..+     +...-..++....+.++-++-..+.+.+.+     ...--..|.......-.+++|++++.+.+
T Consensus       109 eA~~~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL  178 (557)
T KOG3785|consen  109 EAKSIAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVL  178 (557)
T ss_pred             HHHHHHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHH
Confidence            88777665432     333344445555666766665555555542     22333345555445567788888888887


Q ss_pred             hCCCCCCHHHHHHH-HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHH
Q 045674          280 ARNVQPDKITYMTL-IQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVA  358 (650)
Q Consensus       280 ~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  358 (650)
                      ..  .|+-...+.. ..+|.+..-++-+.++++-..+. ++.+....+..+....+.-.-..|..-..++.+.+-..   
T Consensus       179 ~d--n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~---  252 (557)
T KOG3785|consen  179 QD--NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE---  252 (557)
T ss_pred             hc--ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc---
Confidence            65  3344444443 34556677777777777777665 33345555555555555444444555555555442211   


Q ss_pred             HHHHHHHHHHhc-----CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          359 IYTALIDSYAKL-----GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL  433 (650)
Q Consensus       359 ~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  433 (650)
                       | ..+.-.++.     ..-+.|++++-.+.+.  .|.  .-..++--|.+++++++|..+.+++.-.    ++.-|-.-
T Consensus       253 -~-~f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilK  322 (557)
T KOG3785|consen  253 -Y-PFIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILK  322 (557)
T ss_pred             -c-hhHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHH
Confidence             1 123333332     2346777777666543  232  2233444577888888888877655321    22222222


Q ss_pred             HHHHHHcC-------CHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          434 IDGLGKAG-------RVDEAEELFEEMVEKGCPRDS-YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       434 ~~~~~~~~-------~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      .-.+...|       .+.-|.+.|.-.-+.+...|. ..-..++..+.-..++++++..++.+...-...|...+ .+..
T Consensus       323 gvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQ  401 (557)
T KOG3785|consen  323 GVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQ  401 (557)
T ss_pred             HHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHH
Confidence            22233333       244555555544443322222 22344555566667788888888777765444444444 3677


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRIKE  584 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~  584 (650)
                      +++..|.+.+|.++|-++....++.+......++++|.+.++.+-|++++-++-.  +. .-..+..++..+.+.+++=-
T Consensus       402 Ak~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t--~~e~fsLLqlIAn~CYk~~eFyy  479 (557)
T KOG3785|consen  402 AKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT--PSERFSLLQLIANDCYKANEFYY  479 (557)
T ss_pred             HHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC--chhHHHHHHHHHHHHHHHHHHHH
Confidence            7888888888888887776554553333334567788888888888776655432  11 23445556777778888777


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCChhhhhh
Q 045674          585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG--YDRMGSIKR  640 (650)
Q Consensus       585 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~  640 (650)
                      |.+.|+.+...  .|+++.|         .|+-.....++..+....  +.|.+-+..
T Consensus       480 aaKAFd~lE~l--DP~pEnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rE  526 (557)
T KOG3785|consen  480 AAKAFDELEIL--DPTPENW---------EGKRGACAGLFRQLANHKTDPIPISQMRE  526 (557)
T ss_pred             HHHhhhHHHcc--CCCcccc---------CCccchHHHHHHHHHcCCCCCCchhHHHH
Confidence            77777776655  4666666         344444455566555442  234444443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.64  E-value=2.4e-12  Score=114.02  Aligned_cols=286  Identities=14%  Similarity=0.148  Sum_probs=199.0

Q ss_pred             cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC------HHHHHHHHHHHHhcCCH
Q 045674          230 SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD------KITYMTLIQACYLEGDF  303 (650)
Q Consensus       230 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~~~~  303 (650)
                      +.+.++|.++|-.|.+.. +-+..+..+|.+.|-+.|..|.|+++.+.+.++   ||      ......|..-|...|-+
T Consensus        48 s~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~s---pdlT~~qr~lAl~qL~~Dym~aGl~  123 (389)
T COG2956          48 SNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLES---PDLTFEQRLLALQQLGRDYMAAGLL  123 (389)
T ss_pred             hcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcC---CCCchHHHHHHHHHHHHHHHHhhhh
Confidence            456677778887777643 234556667778888888888888888877764   22      23344566777788888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHH
Q 045674          304 DSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV----AIYTALIDSYAKLGSMNEAINI  379 (650)
Q Consensus       304 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~  379 (650)
                      |.|+++|..+.+.+ ..-......|+.+|-...+|++|+++-+++.+.+-.+..    ..|.-|...+....++++|..+
T Consensus       124 DRAE~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~  202 (389)
T COG2956         124 DRAEDIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRAREL  202 (389)
T ss_pred             hHHHHHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence            88888888877653 234566777888888888888888888877776544332    2455566666677888888888


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCP  459 (650)
Q Consensus       380 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  459 (650)
                      +.+..+.+.+ ....-..+.+.+...|+++.|.+.++.+.+.++..-..+...|..+|.+.|+.++....+..+.+..  
T Consensus       203 l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~--  279 (389)
T COG2956         203 LKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETN--  279 (389)
T ss_pred             HHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHcc--
Confidence            8888775322 2334445667788888899998888888888777667777888888888899888888888888863  


Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH---hcCCHHHHHHHHHHHHH
Q 045674          460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF---KEHRNEEALKLWDMMID  525 (650)
Q Consensus       460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~---~~~~~~~A~~~~~~~~~  525 (650)
                      ++...-..+........-.+.|...+.+-+..  .|+...+..|+....   ..|+..+-+..++.|+.
T Consensus       280 ~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvg  346 (389)
T COG2956         280 TGADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVG  346 (389)
T ss_pred             CCccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHH
Confidence            44445555555555555556666655555444  478888888877554   34456666677777764

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.64  E-value=2.8e-11  Score=110.76  Aligned_cols=323  Identities=15%  Similarity=0.069  Sum_probs=221.6

Q ss_pred             CCCHHHHHHHHHHH--HhcCChHHHHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-h
Q 045674          319 EIPSHAYNLVIGGL--CKVGKCIEGHAIFESMIRR-GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-T  394 (650)
Q Consensus       319 ~~~~~~~~~l~~~~--~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~  394 (650)
                      ++...+...++.++  +-.++...+...+-.+... .++-|+.....+...+...|+.++|+..|++....  .|+.. .
T Consensus       191 ~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~  268 (564)
T KOG1174|consen  191 PDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEA  268 (564)
T ss_pred             CCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--Chhhhhh
Confidence            33334444444333  3344555555554444433 24556777777888888888888888888887654  33322 2


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674          395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK  474 (650)
Q Consensus       395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (650)
                      +......+.+.|+++....+...+....- .....|..-+.......+++.|+.+-++.+..+ +.+...+..-+..+.+
T Consensus       269 MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~  346 (564)
T KOG1174|consen  269 MDLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIA  346 (564)
T ss_pred             HHHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHh
Confidence            22223334567777777777766655421 133334444455556677888888888887764 5566667667777888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-hcCCHHHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS-IGLC-LSGKVARAC  552 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~-~~~~-~~g~~~~A~  552 (650)
                      .|+.++|.-.|+..+...+ -+...|..|+.+|...|++.+|.-+-....+. +.-+..++..++ .++. ...--++|.
T Consensus       347 ~~R~~~A~IaFR~Aq~Lap-~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK  424 (564)
T KOG1174|consen  347 LERHTQAVIAFRTAQMLAP-YRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK  424 (564)
T ss_pred             ccchHHHHHHHHHHHhcch-hhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence            8888888888888877643 26778888888888888888888777776654 233566666554 3332 333457888


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      +++++.+...|.-..+...+++.+...|++++++.++++.+..  .+|....+.|++.+...+.+.+|.+.|..++..+|
T Consensus       425 kf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP  502 (564)
T KOG1174|consen  425 KFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDP  502 (564)
T ss_pred             HHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCc
Confidence            8888888888887777888888888888888888888888864  57777788888888888888888888888888888


Q ss_pred             CChhhhhhhhccccccC
Q 045674          633 DRMGSIKRRVKFRSLVE  649 (650)
Q Consensus       633 ~~~~~~~~~~~~~~~~~  649 (650)
                      ......+-+-+.++.++
T Consensus       503 ~~~~sl~Gl~~lEK~~~  519 (564)
T KOG1174|consen  503 KSKRTLRGLRLLEKSDD  519 (564)
T ss_pred             cchHHHHHHHHHHhccC
Confidence            88877777777666543

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.64  E-value=4.1e-12  Score=116.30  Aligned_cols=287  Identities=10%  Similarity=0.043  Sum_probs=172.3

Q ss_pred             cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHH
Q 045674          335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQY  414 (650)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~  414 (650)
                      .|++..|++...+..+.+-.| ...|..-+++-.+.|+.+.+-.++.++.+..-.++....-.........|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            455555555555544443222 1223333344445555555555555555432223333444444445555555666555


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          415 FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY-------CYNVLIDALAKCGKLDEALALFKR  487 (650)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~  487 (650)
                      +..+.+.++. +..+......+|.+.|++.....++..+.+.+.-.+..       +|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            5555555544 44555555556666666666666666665555333322       333444433333333333445554


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674          488 MEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPET  567 (650)
Q Consensus       488 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  567 (650)
                      .... .+.++..-..++.-+...|+.++|.++.++..+.+.+|+.   .. .-.+.+-++.+.-++..++..+..+.++.
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L---~~-~~~~l~~~d~~~l~k~~e~~l~~h~~~p~  329 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL---CR-LIPRLRPGDPEPLIKAAEKWLKQHPEDPL  329 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH---HH-HHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence            4332 2234555556666777788888888888888777665541   11 12345667777778888888877777778


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .+..||..|.+.+.|.+|.+.++.+++.  .|+...|..++.++.+.|+..+|.+..++.+-.
T Consensus       330 L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~  390 (400)
T COG3071         330 LLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLL  390 (400)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            8888888888888888888888888765  578888888888888888888888888887743

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.64  E-value=7.9e-11  Score=116.63  Aligned_cols=420  Identities=11%  Similarity=0.047  Sum_probs=280.2

Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCH
Q 045674          208 MKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDK  287 (650)
Q Consensus       208 ~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  287 (650)
                      +....+..|...|..|.-++...|+++.+.+.|++....- --....|..+.-.|...|....|..+++.-......|+.
T Consensus       314 ~r~~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~  392 (799)
T KOG4162|consen  314 LRLKKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSD  392 (799)
T ss_pred             HHHhhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCc
Confidence            3333455677788888888888888888888888876432 235667888888888888888888888877654323433


Q ss_pred             -HHHHHHHHHHH-hcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhc-----------CChHHHHHHHHHHHH
Q 045674          288 -ITYMTLIQACY-LEGDFDSCLSLYHEMDEKG----IEIPSHAYNLVIGGLCKV-----------GKCIEGHAIFESMIR  350 (650)
Q Consensus       288 -~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~~~~  350 (650)
                       ..+......|. +.+.+++++++-.+.....    -......|..+.-+|...           ....++.+.+++.++
T Consensus       393 ~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~  472 (799)
T KOG4162|consen  393 ISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ  472 (799)
T ss_pred             chHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence             33333334443 3566777777776666521    122344555555544322           123456677777776


Q ss_pred             cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674          351 RGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFY  430 (650)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  430 (650)
                      .+.. |..+...+.--|+..++.+.|++...+..+.+-.-+...|..+.-.+...+++.+|+.+.+........ |....
T Consensus       473 ~d~~-dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~-N~~l~  550 (799)
T KOG4162|consen  473 FDPT-DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD-NHVLM  550 (799)
T ss_pred             cCCC-CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh-hhhhc
Confidence            6432 333333466667778888888888888887655557778888887788888888888888877665322 33333


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH---------HHHHHHcCCHHHHHHHHHHHH--------HcC-
Q 045674          431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL---------IDALAKCGKLDEALALFKRME--------DEG-  492 (650)
Q Consensus       431 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l---------~~~~~~~g~~~~A~~~~~~~~--------~~~-  492 (650)
                      ..-+..-...++.++++.....++.. +..-..+-..+         .......++..++.+..+.+.        ..| 
T Consensus       551 ~~~~~i~~~~~~~e~~l~t~~~~L~~-we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~s  629 (799)
T KOG4162|consen  551 DGKIHIELTFNDREEALDTCIHKLAL-WEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGS  629 (799)
T ss_pred             hhhhhhhhhcccHHHHHHHHHHHHHH-HHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhccc
Confidence            33444445577888887777766542 00000000000         000000111222222211110        011 


Q ss_pred             ----------CCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          493 ----------CDQT------VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILD  556 (650)
Q Consensus       493 ----------~~~~------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  556 (650)
                                ..|+      ...|......+.+.+..++|...+.++....+. ....|...+..+...|+.++|.+.|.
T Consensus       630 e~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~l-~~~~~~~~G~~~~~~~~~~EA~~af~  708 (799)
T KOG4162|consen  630 ELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKIDPL-SASVYYLRGLLLEVKGQLEEAKEAFL  708 (799)
T ss_pred             ccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcchh-hHHHHHHhhHHHHHHHhhHHHHHHHH
Confidence                      1122      223445566677889999999999888875333 66677888888999999999999999


Q ss_pred             HHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH--HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          557 ELAPKGIIPETAFEDMITCLCKTGRIKEACK--LADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       557 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+...+|.+.....+++.++.+.|+..-|..  ++..+++.+ +.++.+|..++..+.+.|+.+.|-+-|..+++....
T Consensus       709 ~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S  786 (799)
T KOG4162|consen  709 VALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEES  786 (799)
T ss_pred             HHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccC
Confidence            9999999999999999999999999888887  999999998 889999999999999999999999999999987654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.62  E-value=1.3e-10  Score=112.84  Aligned_cols=162  Identities=12%  Similarity=0.005  Sum_probs=79.0

Q ss_pred             HHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          114 VSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG  193 (650)
Q Consensus       114 ~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (650)
                      +.++++.+. .+.+...+++.+.+.+.  ++...++....+-.+...|+-++|.......+..+ .-+...|..+.-.+.
T Consensus        11 F~~~lk~yE-~kQYkkgLK~~~~iL~k--~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R   86 (700)
T KOG1156|consen   11 FRRALKCYE-TKQYKKGLKLIKQILKK--FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQR   86 (700)
T ss_pred             HHHHHHHHH-HHHHHhHHHHHHHHHHh--CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHh
Confidence            334444332 34455555555555442  33444455455555555556666655555555432 334455555555555


Q ss_pred             cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHH
Q 045674          194 GLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAME  273 (650)
Q Consensus       194 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  273 (650)
                      ...++++|+..|......+ +.|...+.-+.-.-.+.++++.....-..+.+.. +-....|..++.++.-.|++..|..
T Consensus        87 ~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~  164 (700)
T KOG1156|consen   87 SDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALE  164 (700)
T ss_pred             hhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            5555666666665555543 2244444444333344455544444444444331 1223344455555555555555555


Q ss_pred             HHHHHHhC
Q 045674          274 KFRAMEAR  281 (650)
Q Consensus       274 ~~~~~~~~  281 (650)
                      +++...+.
T Consensus       165 il~ef~~t  172 (700)
T KOG1156|consen  165 ILEEFEKT  172 (700)
T ss_pred             HHHHHHHh
Confidence            55555443

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=99.62  E-value=9.7e-11  Score=113.70  Aligned_cols=96  Identities=13%  Similarity=0.057  Sum_probs=63.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          536 RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG  615 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  615 (650)
                      ..++..+.+.|+++.|..+++.++.+.|.-.+.|..-++.+...|++++|..+++++.+.+ .+|..+-...+.-..+.+
T Consensus       375 y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD-~aDR~INsKcAKYmLrAn  453 (700)
T KOG1156|consen  375 YFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELD-TADRAINSKCAKYMLRAN  453 (700)
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhcc-chhHHHHHHHHHHHHHcc
Confidence            4455666677777777777777777666666666666777777777777777777777665 444444334555556667


Q ss_pred             CHHHHHHHHHHHHHCCC
Q 045674          616 NADLAIKLMHSKIGVGY  632 (650)
Q Consensus       616 ~~~~A~~~~~~~~~~~~  632 (650)
                      +.++|.++..+.-..|.
T Consensus       454 ~i~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  454 EIEEAEEVLSKFTREGF  470 (700)
T ss_pred             ccHHHHHHHHHhhhccc
Confidence            77777777776666655

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.62  E-value=1.1e-11  Score=113.63  Aligned_cols=291  Identities=12%  Similarity=0.103  Sum_probs=183.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          300 EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINI  379 (650)
Q Consensus       300 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  379 (650)
                      .|+|.+|+++..+-.+.+.. ....|..-+++.-..|+.+.+-.++.++.+..-.++...+-...+.....|+++.|..-
T Consensus        97 eG~~~qAEkl~~rnae~~e~-p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~  175 (400)
T COG3071          97 EGDFQQAEKLLRRNAEHGEQ-PVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAREN  175 (400)
T ss_pred             cCcHHHHHHHHHHhhhcCcc-hHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHH
Confidence            45666666665554444322 33344444555555666666666666665553344455555555666666666666666


Q ss_pred             HHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA-------MFYSSLIDGLGKAGRVDEAEELFEE  452 (650)
Q Consensus       380 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~  452 (650)
                      +.++.+.+.. .........++|.+.|++.+...++..+.+.+.-.+.       .+|..+++-....+..+.-...++.
T Consensus       176 v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~  254 (400)
T COG3071         176 VDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKN  254 (400)
T ss_pred             HHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHh
Confidence            6666554322 3455566666666666666666666666666544332       2344444444444444444455555


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          453 MVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA  532 (650)
Q Consensus       453 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~  532 (650)
                      ...+ ...++..-..++.-+.++|+.++|.++.++..+.+.+|+.    .....+.+-++.+.-++..++..+..+. ++
T Consensus       255 ~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~p  328 (400)
T COG3071         255 QPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPE-DP  328 (400)
T ss_pred             ccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCC-Ch
Confidence            5443 3456667777777888888888888888888887666552    1222355677777777777777765443 55


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI  599 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  599 (650)
                      ..+..++..|.+.+.+.+|..+|+.+.+.. .+...++.+++++.+.|+..+|.+..++.+-.-.+|
T Consensus       329 ~L~~tLG~L~~k~~~w~kA~~~leaAl~~~-~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         329 LLLSTLGRLALKNKLWGKASEALEAALKLR-PSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             hHHHHHHHHHHHhhHHHHHHHHHHHHHhcC-CChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            778888888888888888888888877763 356777888888888888888888888877543333

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.61  E-value=5.8e-12  Score=111.64  Aligned_cols=226  Identities=17%  Similarity=0.186  Sum_probs=101.4

Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHH
Q 045674          266 GKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIF  345 (650)
Q Consensus       266 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  345 (650)
                      ++.++|.++|-+|.+.+ +.+..+..+|.+.|.+.|..|.|+++.+.+.++.   |. |+..                  
T Consensus        49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~sp---dl-T~~q------------------  105 (389)
T COG2956          49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESP---DL-TFEQ------------------  105 (389)
T ss_pred             cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCC---CC-chHH------------------
Confidence            55666666666665532 2233444555556666666666666665555431   10 0000                  


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          346 ESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAV  425 (650)
Q Consensus       346 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  425 (650)
                                .......|..-|...|-++.|..+|..+.+.+. .-......++..|-...+|++|++.-+++.+.+..+
T Consensus       106 ----------r~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~  174 (389)
T COG2956         106 ----------RLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQT  174 (389)
T ss_pred             ----------HHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCcc
Confidence                      011122233444444444444444444443211 112233444444444444444444444444433222


Q ss_pred             C----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          426 N----AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYT  501 (650)
Q Consensus       426 ~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  501 (650)
                      .    ...|.-+...+....+++.|..++.+..+.+ +..+..-..+++.+...|+++.|.+.++.+.+.++.--..+..
T Consensus       175 ~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~  253 (389)
T COG2956         175 YRVEIAQFYCELAQQALASSDVDRARELLKKALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLE  253 (389)
T ss_pred             chhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHH
Confidence            1    1223333333444445555555555555443 3333333444445555555555555555555543333333444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      .|..+|...|+.++....+.++.+.
T Consensus       254 ~L~~~Y~~lg~~~~~~~fL~~~~~~  278 (389)
T COG2956         254 MLYECYAQLGKPAEGLNFLRRAMET  278 (389)
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHc
Confidence            4445555555555555555555443

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.60  E-value=6.8e-11  Score=106.13  Aligned_cols=495  Identities=14%  Similarity=0.129  Sum_probs=311.3

Q ss_pred             CCchhhhHHHHHHhhcCCCC-hHHHHH-HHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 045674           91 SSDMEANLDSFCRKFLIKLS-PNFVSF-VLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRL  168 (650)
Q Consensus        91 ~~~~~~al~~~~~~~~~~~~-~~~~~~-~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  168 (650)
                      ..++..|...+--....+.. .+.+.. +...+-+.|++++|+..+..+....  .++.+.+..++-++.-.|.+.+|..
T Consensus        35 ~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~--~~~~el~vnLAcc~FyLg~Y~eA~~  112 (557)
T KOG3785|consen   35 NRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD--DAPAELGVNLACCKFYLGQYIEAKS  112 (557)
T ss_pred             cccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC--CCCcccchhHHHHHHHHHHHHHHHH
Confidence            55666555443322222222 223333 4455567899999999999887753  4566777778888888899999998


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCC
Q 045674          169 VFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKV  248 (650)
Q Consensus       169 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~  248 (650)
                      +.++..+     ++-....|...-.+.++-++...+-+.+...     ...-.+|.........+.+|++++.+++..  
T Consensus       113 ~~~ka~k-----~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--  180 (557)
T KOG3785|consen  113 IAEKAPK-----TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQD--  180 (557)
T ss_pred             HHhhCCC-----ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhc--
Confidence            8877643     3444445555566778877777666665442     233445555556666789999999999866  


Q ss_pred             CCChhhHHHHH-HHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          249 GPDVVTYNTMI-KGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNL  327 (650)
Q Consensus       249 ~~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  327 (650)
                      .|+....|..+ -+|.+..-++-+.+++.-.+.. .+.+....+..+....+.=+-..|.+-.+++...+...    |- 
T Consensus       181 n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q-~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~----~~-  254 (557)
T KOG3785|consen  181 NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ-FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQE----YP-  254 (557)
T ss_pred             ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh-CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhccccc----ch-
Confidence            45666666544 5667778888888888888765 23345555655555555434444555555555543211    11 


Q ss_pred             HHHHHHh-----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHH
Q 045674          328 VIGGLCK-----VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGL  402 (650)
Q Consensus       328 l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  402 (650)
                      .+.-.++     -.+-+.|.+++-.+.+.  -|.  .-..|+-.|.+.+++.+|..+.+.+.--    ++.-|..-.-.+
T Consensus       255 f~~~l~rHNLVvFrngEgALqVLP~L~~~--IPE--ARlNL~iYyL~q~dVqeA~~L~Kdl~Pt----tP~EyilKgvv~  326 (557)
T KOG3785|consen  255 FIEYLCRHNLVVFRNGEGALQVLPSLMKH--IPE--ARLNLIIYYLNQNDVQEAISLCKDLDPT----TPYEYILKGVVF  326 (557)
T ss_pred             hHHHHHHcCeEEEeCCccHHHhchHHHhh--ChH--hhhhheeeecccccHHHHHHHHhhcCCC----ChHHHHHHHHHH
Confidence            2222333     24557888888888765  222  3344777789999999999988776521    233332222233


Q ss_pred             HhcCC-------HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674          403 CKNER-------LEEAMQYFEFCRANGVAVNA-MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK  474 (650)
Q Consensus       403 ~~~g~-------~~~a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (650)
                      +..|+       ..-|.+.|...-+.+..-|. .--.++...+.-..++|+.+-.++.+..- +..|...-..++++++.
T Consensus       327 aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sY-F~NdD~Fn~N~AQAk~a  405 (557)
T KOG3785|consen  327 AALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESY-FTNDDDFNLNLAQAKLA  405 (557)
T ss_pred             HHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH-hcCcchhhhHHHHHHHH
Confidence            34333       45566666655444433222 22445677777788899999888887775 34444455568899999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCHHHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYT-ILINGMFKEHRNEEALKLWDMMIDKGITPTAA-SFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~A~  552 (650)
                      .|++.+|+++|-++....++ |..+|. .|..+|.+.++++-|..++-++.   ...+.. .+..++..|.+.+.+=-|.
T Consensus       406 tgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~---t~~e~fsLLqlIAn~CYk~~eFyyaa  481 (557)
T KOG3785|consen  406 TGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTN---TPSERFSLLQLIANDCYKANEFYYAA  481 (557)
T ss_pred             hcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcC---CchhHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999888766555 555565 55678889999999887765543   222232 3445567888999998899


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC--HHHHHHHHHHHH
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGN--ADLAIKLMHSKI  628 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~--~~~A~~~~~~~~  628 (650)
                      +.|+.+...+|.+ +-|         .|+-....-+|..+......| ......-++..++..++  .+--+++.++-.
T Consensus       482 KAFd~lE~lDP~p-EnW---------eGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa  550 (557)
T KOG3785|consen  482 KAFDELEILDPTP-ENW---------EGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA  550 (557)
T ss_pred             HhhhHHHccCCCc-ccc---------CCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence            9998888776653 322         345455556666665443222 34455666666666664  344444444433

>PRK12370 invasion protein regulator; Provisional

Probab=99.59  E-value=1.1e-12  Score=136.16  Aligned_cols=256  Identities=14%  Similarity=0.037  Sum_probs=194.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHH---------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 045674          371 GSMNEAINIFERMKYEGVEPD-EVTYGVIISGLC---------KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA  440 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~---------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  440 (650)
                      ++.++|+.+|++..+.  .|+ ...|..+..++.         ..+++++|...++++.+.++. +...+..+..++...
T Consensus       275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ldP~-~~~a~~~lg~~~~~~  351 (553)
T PRK12370        275 YSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELDHN-NPQALGLLGLINTIH  351 (553)
T ss_pred             HHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHc
Confidence            3467888888888875  443 344555544433         234588999999999998776 788888899999999


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674          441 GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLW  520 (650)
Q Consensus       441 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  520 (650)
                      |++++|...|+++++.+ |.+...+..++.++...|++++|+..++++.+..+. +...+..++..+...|++++|...+
T Consensus       352 g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~  429 (553)
T PRK12370        352 SEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLG  429 (553)
T ss_pred             cCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHH
Confidence            99999999999999986 777888999999999999999999999999998654 3333344455567789999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674          521 DMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP  600 (650)
Q Consensus       521 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  600 (650)
                      +++.+....-+...+..++.++...|++++|...+.++....+.+....+.++..++..|  ++|...++.+++.. ...
T Consensus       430 ~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~-~~~  506 (553)
T PRK12370        430 DELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESE-QRI  506 (553)
T ss_pred             HHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHh-hHh
Confidence            998876433355667788889999999999999999988776667778888888888888  47888777776542 111


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          601 GKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       601 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      ......+...|.-.|+.+.+..+ +++.+.|...-
T Consensus       507 ~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~~~~  540 (553)
T PRK12370        507 DNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDNIWF  540 (553)
T ss_pred             hcCchHHHHHHHHHhhhHHHHHH-HHhhccchHhh
Confidence            11122255567778888888776 88888766543

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.59  E-value=1.9e-12  Score=120.30  Aligned_cols=202  Identities=16%  Similarity=0.138  Sum_probs=163.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      ....+..++..+...|++++|.+.++++.+.. +.+...+..++..+...|++++|.+.+++..+..+. +...+..++.
T Consensus        30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~~~  107 (234)
T TIGR02521        30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLNPN-NGDVLNNYGT  107 (234)
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHH
Confidence            34566677788888888888888888887764 556777788888888888888888888888876543 5667777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE  584 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  584 (650)
                      .+...|++++|.+.++++.+.... .....+..++.++...|++++|...++++.+..+.+...+..++.++...|++++
T Consensus       108 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       108 FLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHH
Confidence            888888999999888888864322 2345667788888999999999999999998888888888899999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          585 ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       585 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      |.++++++++.. +.+...+..++..+...|+.++|..+.+.+.+.
T Consensus       188 A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       188 ARAYLERYQQTY-NQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            999999998873 566777778888888999999999988877664

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.58  E-value=5.7e-10  Score=102.42  Aligned_cols=279  Identities=13%  Similarity=0.072  Sum_probs=203.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 045674          318 IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG  396 (650)
Q Consensus       318 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~  396 (650)
                      ++.++.....+...+...|+.++|+..|++....  .|+ +.........+.+.|+.+....+...+.... .-....|.
T Consensus       228 lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wf  304 (564)
T KOG1174|consen  228 LRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWF  304 (564)
T ss_pred             CCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhh
Confidence            5567788888888888888888888888887765  222 2222233444567788888777777765431 11333444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674          397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG  476 (650)
Q Consensus       397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  476 (650)
                      .-+......++++.|+.+-++.++.+.. +...|-.-+.++...++.++|.-.|+...... |-+..+|..|+.+|...|
T Consensus       305 V~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~  382 (564)
T KOG1174|consen  305 VHAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQK  382 (564)
T ss_pred             hhhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhc
Confidence            4455566778888899888888877655 66677777788888999999999999888764 678889999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHH-HHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTYTILI-NGMF-KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKI  554 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~-~~~~-~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  554 (650)
                      ++.+|...-+...+. +..+..++..++ ..+. ...--++|.+++++.+...+. -....+.++..+...|++++++.+
T Consensus       383 ~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~-Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  383 RFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPI-YTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             hHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCc-cHHHHHHHHHHHHhhCccchHHHH
Confidence            999988877776664 334677776664 3333 333457888888888775333 234667778888899999999999


Q ss_pred             HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRT  605 (650)
Q Consensus       555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  605 (650)
                      +++.+.. ..|....+.|++.+...+.+++|.+.|..++..+ |.+..+..
T Consensus       461 Le~~L~~-~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d-P~~~~sl~  509 (564)
T KOG1174|consen  461 LEKHLII-FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD-PKSKRTLR  509 (564)
T ss_pred             HHHHHhh-ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-ccchHHHH
Confidence            9998865 3466778889999999999999999999999876 44444433

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=99.58  E-value=1.3e-10  Score=115.24  Aligned_cols=411  Identities=12%  Similarity=-0.016  Sum_probs=281.9

Q ss_pred             CCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC-hhhH
Q 045674          177 GFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD-VVTY  255 (650)
Q Consensus       177 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~-~~~~  255 (650)
                      .+..+..+|..|.-+....|+++.+.+.|++.....+ -....|+.+...+...|.-..|..+++......-.|+ ...+
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~-~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~  396 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSF-GEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL  396 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhh-hhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence            3456788899999999999999999999999876533 3677888888899999999999999988765432343 3333


Q ss_pred             HHHHHHHHH-cCChhHHHHHHHHHHhC--CC--CCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCC
Q 045674          256 NTMIKGYCK-VGKTQKAMEKFRAMEAR--NV--QPDKITYMTLIQACYLE-----------GDFDSCLSLYHEMDEKGIE  319 (650)
Q Consensus       256 ~~l~~~~~~-~g~~~~A~~~~~~~~~~--~~--~~~~~~~~~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~  319 (650)
                      ...-+.|.+ .+..++++++-.+....  +.  ......|..+.-+|...           ....++++.+++..+.+..
T Consensus       397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~  476 (799)
T KOG4162|consen  397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPT  476 (799)
T ss_pred             HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCC
Confidence            333344443 37778888777777652  11  11234444444444321           1245678888888877544


Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHH
Q 045674          320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVII  399 (650)
Q Consensus       320 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~  399 (650)
                       |..+...+.--|...++++.|.+...+.++.+..-+...|..|+..+...+++.+|+.+.+.....- .-|......-+
T Consensus       477 -dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~-~~N~~l~~~~~  554 (799)
T KOG4162|consen  477 -DPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEF-GDNHVLMDGKI  554 (799)
T ss_pred             -CchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHh-hhhhhhchhhh
Confidence             4455555666788899999999999999998667788899999999999999999999998876541 11111122222


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC---------------------C-------CCCCHHHHHHHHHHHHHcC---CHHHHHH
Q 045674          400 SGLCKNERLEEAMQYFEFCRAN---------------------G-------VAVNAMFYSSLIDGLGKAG---RVDEAEE  448 (650)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~~~~~---------------------~-------~~~~~~~~~~l~~~~~~~~---~~~~A~~  448 (650)
                      ..-...++.++++.....+...                     |       +.-...++..+.......+   ..+..  
T Consensus       555 ~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~--  632 (799)
T KOG4162|consen  555 HIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELK--  632 (799)
T ss_pred             hhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccc--
Confidence            2223356666665554433221                     0       0001112221111111000   00000  


Q ss_pred             HHHHHHHcCCCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          449 LFEEMVEKGCPRD------SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDM  522 (650)
Q Consensus       449 ~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  522 (650)
                       +...... -.|+      ...|......+.+.++.++|...+.+..+.. .-....|...+..+...|..++|.+.|..
T Consensus       633 -Lp~s~~~-~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~  709 (799)
T KOG4162|consen  633 -LPSSTVL-PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLV  709 (799)
T ss_pred             -cCccccc-CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHH
Confidence             0000000 0112      2345667777888999999998888887763 33677788888888899999999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH--HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          523 MIDKGITPTAASFRALSIGLCLSGKVARACK--ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       523 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ++..++. +.....+++.++.+.|+..-|.+  ++..+.+.+|.++++|..++.++.+.|+.++|.+.|..+.+..
T Consensus       710 Al~ldP~-hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe  784 (799)
T KOG4162|consen  710 ALALDPD-HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE  784 (799)
T ss_pred             HHhcCCC-CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence            9986555 66788999999999998887877  9999999999999999999999999999999999999999875

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.58  E-value=3.7e-10  Score=108.57  Aligned_cols=455  Identities=13%  Similarity=0.086  Sum_probs=252.5

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV  228 (650)
Q Consensus       149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (650)
                      ....=++.+...|++++|.+...+++..+ +.+...+..-+.++.+.+++++|+.+.+.-...  ..+.+.+.--.-+..
T Consensus        14 ~l~t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Y   90 (652)
T KOG2376|consen   14 ALLTDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEY   90 (652)
T ss_pred             HHHHHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHH
Confidence            33445566777888888888888888765 667777777777888888888888555443221  111111112223445


Q ss_pred             hcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 045674          229 NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP-DKITYMTLIQACYLEGDFDSCL  307 (650)
Q Consensus       229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~  307 (650)
                      +.+..++|...++...    +.+..+...-...+.+.|++++|+++|+.+.+.+.+. +...-..++.+-..    -.+.
T Consensus        91 rlnk~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~----l~~~  162 (652)
T KOG2376|consen   91 RLNKLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAA----LQVQ  162 (652)
T ss_pred             HcccHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHh----hhHH
Confidence            7788888888887332    2244466666777888888888888888887765321 11111112211100    0110


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC-------CCc------CH-HHHHHHHHHHHhcCCH
Q 045674          308 SLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG-------CQP------NV-AIYTALIDSYAKLGSM  373 (650)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~------~~-~~~~~l~~~~~~~~~~  373 (650)
                       +.+..... ...+-..+......++..|++.+|+++++...+.+       -..      +. .+--.|..++...|+.
T Consensus       163 -~~q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt  240 (652)
T KOG2376|consen  163 -LLQSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQT  240 (652)
T ss_pred             -HHHhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcch
Confidence             11111111 11122233334556667888888888888773221       000      00 1223456677788999


Q ss_pred             HHHHHHHHHHHHCCCCCCHHhH----HHHHHHHHhcCCHH--HHHHHHHHHHHCCCC----------CCHHHH-HHHHHH
Q 045674          374 NEAINIFERMKYEGVEPDEVTY----GVIISGLCKNERLE--EAMQYFEFCRANGVA----------VNAMFY-SSLIDG  436 (650)
Q Consensus       374 ~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~----------~~~~~~-~~l~~~  436 (650)
                      ++|..+|..++.... +|....    |.++. +....++-  .++..++........          -..... +.++.+
T Consensus       241 ~ea~~iy~~~i~~~~-~D~~~~Av~~NNLva-~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l  318 (652)
T KOG2376|consen  241 AEASSIYVDIIKRNP-ADEPSLAVAVNNLVA-LSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLAL  318 (652)
T ss_pred             HHHHHHHHHHHHhcC-CCchHHHHHhcchhh-hccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999998887643 243222    22221 22211211  122222211111000          001111 112222


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA-KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEE  515 (650)
Q Consensus       437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  515 (650)
                      |  .+..+.+.+........  .|....-..+..++. +...+..+.+++...-+..+.......-.++......|+++.
T Consensus       319 ~--tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~  394 (652)
T KOG2376|consen  319 F--TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEV  394 (652)
T ss_pred             H--hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHH
Confidence            2  33334444443332221  233332222333322 223477778887777766444345556666777778899999


Q ss_pred             HHHHHH--------HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHHcC
Q 045674          516 ALKLWD--------MMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK-------GIIPETAFEDMITCLCKTG  580 (650)
Q Consensus       516 A~~~~~--------~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g  580 (650)
                      |++++.        .+.+.+..  +.+...+...+.+.++.+.|..++.+++..       ...-...+..++..-.+.|
T Consensus       395 A~~il~~~~~~~~ss~~~~~~~--P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G  472 (652)
T KOG2376|consen  395 ALEILSLFLESWKSSILEAKHL--PGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHG  472 (652)
T ss_pred             HHHHHHHHhhhhhhhhhhhccC--hhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcC
Confidence            999988        44444333  345555666677777766666666666532       1112344555666667789


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          581 RIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       581 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      +-++|..+++++++.+ ++|..+...++.+|... +.+.|..+-+.
T Consensus       473 ~~~ea~s~leel~k~n-~~d~~~l~~lV~a~~~~-d~eka~~l~k~  516 (652)
T KOG2376|consen  473 NEEEASSLLEELVKFN-PNDTDLLVQLVTAYARL-DPEKAESLSKK  516 (652)
T ss_pred             chHHHHHHHHHHHHhC-CchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence            9999999999999876 78888888888888776 66777766543

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.58  E-value=8.1e-13  Score=116.93  Aligned_cols=234  Identities=11%  Similarity=0.070  Sum_probs=198.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGL  437 (650)
Q Consensus       358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  437 (650)
                      .--+.+..+|.+.|.+.+|.+.|+...+.  .|-..||..+-+.|.+..+.+.|+.++.+-.+..+. ++.....+.+.+
T Consensus       224 wWk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~-~VT~l~g~ARi~  300 (478)
T KOG1129|consen  224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPF-DVTYLLGQARIH  300 (478)
T ss_pred             HHHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCc-hhhhhhhhHHHH
Confidence            33356888999999999999999888776  566778888889999999999999999888776443 555556678888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEAL  517 (650)
Q Consensus       438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  517 (650)
                      ...++.++|.++++...+.. +.++.....+...|.-.++.+.|+..+++++..|.. +...|+.++-+|...++++-++
T Consensus       301 eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L  378 (478)
T KOG1129|consen  301 EAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVL  378 (478)
T ss_pred             HHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhH
Confidence            88999999999999998875 677777778888888899999999999999999887 8888999999999999999999


Q ss_pred             HHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          518 KLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       518 ~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ..|++++..--.|+  ...|..++......|++.-|.+.|+-++..+++..+.+++|+..-.+.|++++|..++..+...
T Consensus       379 ~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  379 PSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            99999886533333  4578888888888999999999999999998889999999999999999999999999988765


Q ss_pred             C
Q 045674          596 E  596 (650)
Q Consensus       596 ~  596 (650)
                      .
T Consensus       459 ~  459 (478)
T KOG1129|consen  459 M  459 (478)
T ss_pred             C
Confidence            3

>PRK12370 invasion protein regulator; Provisional

Probab=99.56  E-value=2.5e-12  Score=133.65  Aligned_cols=218  Identities=15%  Similarity=0.033  Sum_probs=176.6

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK---------AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG  476 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  476 (650)
                      +.+++|...|++..+..+. +...|..+..++..         .+++++|...++++++.+ |.+...+..++.++...|
T Consensus       275 ~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g  352 (553)
T PRK12370        275 YSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHS  352 (553)
T ss_pred             HHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcc
Confidence            3468999999999988765 56667666665542         245899999999999986 778899999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILD  556 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  556 (650)
                      ++++|+..|+++.+.++. +...+..++.++...|++++|+..++++++..+. +...+..++..+...|++++|...++
T Consensus       353 ~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~~~g~~eeA~~~~~  430 (553)
T PRK12370        353 EYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITYYHTGIDDAIRLGD  430 (553)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHhccCHHHHHHHHH
Confidence            999999999999998654 6778888999999999999999999999997655 33334445556777899999999999


Q ss_pred             HHhhCC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          557 ELAPKG-IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       557 ~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ++.+.. +.++..+..++.++...|++++|...++++.... +.+......+...|...|  ++|...++++++.
T Consensus       431 ~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~  502 (553)
T PRK12370        431 ELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQE-ITGLIAVNLLYAEYCQNS--ERALPTIREFLES  502 (553)
T ss_pred             HHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhcc-chhHHHHHHHHHHHhccH--HHHHHHHHHHHHH
Confidence            998775 4577888999999999999999999999987653 344555666777777777  4788877776663

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.53  E-value=4e-11  Score=114.01  Aligned_cols=229  Identities=19%  Similarity=0.141  Sum_probs=134.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-------HHHH
Q 045674          397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCY-------NVLI  469 (650)
Q Consensus       397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~-------~~l~  469 (650)
                      .+..+..+..+++.|++.+.......  -+...++....+|...|.+.++...-...++.| .....-|       ..++
T Consensus       229 ~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~g-re~rad~klIak~~~r~g  305 (539)
T KOG0548|consen  229 ELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVG-RELRADYKLIAKALARLG  305 (539)
T ss_pred             HHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHh-HHHHHHHHHHHHHHHHhh
Confidence            34444444555555555555554443  133344444445555555555444444444433 1111111       1233


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          470 DALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA  549 (650)
Q Consensus       470 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  549 (650)
                      .+|.+.++++.++..|.+.....-.|+.         ..+....+++....+...-.++.- ..-...-+..+.+.|++.
T Consensus       306 ~a~~k~~~~~~ai~~~~kaLte~Rt~~~---------ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy~  375 (539)
T KOG0548|consen  306 NAYTKREDYEGAIKYYQKALTEHRTPDL---------LSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDYP  375 (539)
T ss_pred             hhhhhHHhHHHHHHHHHHHhhhhcCHHH---------HHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCHH
Confidence            4555667777777777776554322221         223344455555554444333322 222333466677778888


Q ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .|++.|.++++.+|.|...|.+.+-||.+.|.+..|++-.+..++.+ ++....|..-+.++....+|++|.+.|++.++
T Consensus       376 ~Av~~YteAIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale  454 (539)
T KOG0548|consen  376 EAVKHYTEAIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALE  454 (539)
T ss_pred             HHHHHHHHHHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            88888888888777788888888888888888888888888887776 66666777777777777788888888888887


Q ss_pred             CCCCChhhhh
Q 045674          630 VGYDRMGSIK  639 (650)
Q Consensus       630 ~~~~~~~~~~  639 (650)
                      ..+..-..+.
T Consensus       455 ~dp~~~e~~~  464 (539)
T KOG0548|consen  455 LDPSNAEAID  464 (539)
T ss_pred             cCchhHHHHH
Confidence            7765444433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.53  E-value=7.1e-10  Score=111.07  Aligned_cols=297  Identities=13%  Similarity=0.101  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLV  228 (650)
Q Consensus       149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~  228 (650)
                      .....+.++...|++++|+.+++..... +..........+..+.+.|+.++|..+|..+++.++ .|..-|..+..++.
T Consensus         6 ~lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNP-dn~~Yy~~L~~~~g   83 (517)
T PF12569_consen    6 LLLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNP-DNYDYYRGLEEALG   83 (517)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHh
Confidence            3444566677788888888888775543 344455666777778888888888888888887642 24444444444442


Q ss_pred             hc-----CChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCh-hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045674          229 NS-----MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKT-QKAMEKFRAMEARNVQPDKITYMTLIQACYLEGD  302 (650)
Q Consensus       229 ~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  302 (650)
                      ..     .+.+....+++.+...  -|...+...+.-.+..-..+ ..+..++..+...|++   .+|..|-..|.....
T Consensus        84 ~~~~~~~~~~~~~~~~y~~l~~~--yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K  158 (517)
T PF12569_consen   84 LQLQLSDEDVEKLLELYDELAEK--YPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEK  158 (517)
T ss_pred             hhcccccccHHHHHHHHHHHHHh--CccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhH
Confidence            22     2455666677766543  23222222221111111122 2345556666666654   345555555554444


Q ss_pred             HHHHHHHHHHHHHCC--------------CCCCH--HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC-HHHHHHHHH
Q 045674          303 FDSCLSLYHEMDEKG--------------IEIPS--HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALID  365 (650)
Q Consensus       303 ~~~a~~~~~~~~~~~--------------~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~  365 (650)
                      .+-..+++..+....              -+|..  .++..+...|-..|++++|.++++..++.  .|+ +..|..-++
T Consensus       159 ~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~~ely~~Kar  236 (517)
T PF12569_consen  159 AAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTLVELYMTKAR  236 (517)
T ss_pred             HHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCcHHHHHHHHH
Confidence            444444444443220              01122  23345556666666666666666666665  233 445555666


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--------HHHHHHHHHH
Q 045674          366 SYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA--------MFYSSLIDGL  437 (650)
Q Consensus       366 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--------~~~~~l~~~~  437 (650)
                      .+-+.|++.+|.+.++........ |...=+-....+.+.|++++|.+++....+.+..+..        ......+.+|
T Consensus       237 ilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~  315 (517)
T PF12569_consen  237 ILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAY  315 (517)
T ss_pred             HHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHH
Confidence            666666666666666666654322 4444444555566666666666666655544422211        1112334556


Q ss_pred             HHcCCHHHHHHHHHHHHH
Q 045674          438 GKAGRVDEAEELFEEMVE  455 (650)
Q Consensus       438 ~~~~~~~~A~~~~~~~~~  455 (650)
                      .+.|++..|++.|..+.+
T Consensus       316 ~r~~~~~~ALk~~~~v~k  333 (517)
T PF12569_consen  316 LRQGDYGLALKRFHAVLK  333 (517)
T ss_pred             HHHhhHHHHHHHHHHHHH
Confidence            666666666666555544

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.52  E-value=2.1e-11  Score=113.25  Aligned_cols=200  Identities=15%  Similarity=0.106  Sum_probs=143.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA  471 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  471 (650)
                      ...+..+...+...|++++|.+.++++.+..+. +...+..++..+...|++++|.+.+++..+.. +.+...+..++..
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~  108 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF  108 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence            344555666666777777777777766665433 45666667777777777777777777777764 4566677777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          472 LAKCGKLDEALALFKRMEDEGC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR  550 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  550 (650)
                      +...|++++|.+.++++..... ......+..++.++...|++++|...+++..+..+. +...+..++..+...|++++
T Consensus       109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~  187 (234)
T TIGR02521       109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQ-RPESLLELAELYYLRGQYKD  187 (234)
T ss_pred             HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-ChHHHHHHHHHHHHcCCHHH
Confidence            7788888888888887776422 123445666777778888888888888888775433 45677778888888888888


Q ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      |..+++++.+..+.+...+..++..+...|+.++|..+++.+.+
T Consensus       188 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       188 ARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            88888888877555667777778888888888888888777654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.51  E-value=4.1e-12  Score=107.49  Aligned_cols=203  Identities=14%  Similarity=0.056  Sum_probs=173.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          428 MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGM  507 (650)
Q Consensus       428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (650)
                      .+...|.-.|...|+...|..-+++.++.+ |.+..+|..+...|.+.|+.+.|.+.|++..+..+. +..+.|..+.-+
T Consensus        36 ~arlqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FL  113 (250)
T COG3063          36 KARLQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFL  113 (250)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHH
Confidence            456677888999999999999999999986 777888999999999999999999999999988665 777888899889


Q ss_pred             HhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          508 FKEHRNEEALKLWDMMIDKG-ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      |..|++++|...|+++...- ..--..+|..++.+..+.|+.+.|.++|++.++.++..+.....+.....+.|++-.|.
T Consensus       114 C~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         114 CAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             HhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHH
Confidence            99999999999999998642 22235688889999999999999999999999999998888899999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      -+++.....+ ..+...+...+..-...|+-+.|-++=.++...=|.
T Consensus       194 ~~~~~~~~~~-~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~fP~  239 (250)
T COG3063         194 LYLERYQQRG-GAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRLFPY  239 (250)
T ss_pred             HHHHHHHhcc-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            9999998887 588888888888888999988888776666655443

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.50  E-value=1.3e-09  Score=104.84  Aligned_cols=439  Identities=12%  Similarity=0.054  Sum_probs=257.8

Q ss_pred             HHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 045674          187 SLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG  266 (650)
Q Consensus       187 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  266 (650)
                      +=+..+...|++++|++...++...+ +.+...+..-+.++++.+.+++|..+.+.-...  ..+...+.--.-+..+.+
T Consensus        17 t~ln~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~--~~~~~~~fEKAYc~Yrln   93 (652)
T KOG2376|consen   17 TDLNRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL--LVINSFFFEKAYCEYRLN   93 (652)
T ss_pred             HHHHHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh--hhcchhhHHHHHHHHHcc
Confidence            34456678899999999999999876 557777888888899999999999666543311  111111112223344789


Q ss_pred             ChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCChHHHHHHH
Q 045674          267 KTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI-PSHAYNLVIGGLCKVGKCIEGHAIF  345 (650)
Q Consensus       267 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~  345 (650)
                      ..++|+..++-..    +.+..+...-...+.+.|++++|+++|+.+.+.+.+. +...-..++..-.    .-.+. +.
T Consensus        94 k~Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~  164 (652)
T KOG2376|consen   94 KLDEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LL  164 (652)
T ss_pred             cHHHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HH
Confidence            9999999988332    2244577777889999999999999999998875431 1112222221111    01111 12


Q ss_pred             HHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCH------H-hHHHHHHHHHhcCCHHHH
Q 045674          346 ESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYE-------GVEPDE------V-TYGVIISGLCKNERLEEA  411 (650)
Q Consensus       346 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~~------~-~~~~l~~~~~~~g~~~~a  411 (650)
                      +..... ...+...+......+...|++.+|+++++...+.       +-.-+.      . .-..+..++...|+-++|
T Consensus       165 q~v~~v-~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  165 QSVPEV-PEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HhccCC-CcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence            211111 1112333344667788899999999999988221       111111      1 123345567789999999


Q ss_pred             HHHHHHHHHCCCCCCHHH----HHHHHHHHHHcCC-HH-HHHHHHHHHHHcC-------C---CCCHHHH-HHHHHHHHH
Q 045674          412 MQYFEFCRANGVAVNAMF----YSSLIDGLGKAGR-VD-EAEELFEEMVEKG-------C---PRDSYCY-NVLIDALAK  474 (650)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~~~-~~-~A~~~~~~~~~~~-------~---~~~~~~~-~~l~~~~~~  474 (650)
                      ..++..+++..+. |...    -|.++.+ ....+ ++ .++..++......       +   .-..... +.++..|  
T Consensus       244 ~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~--  319 (652)
T KOG2376|consen  244 SSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALF--  319 (652)
T ss_pred             HHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH--
Confidence            9999999888654 4322    2222222 11111 11 1222222111110       0   0011111 2222222  


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGM-FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      .+..+.+.++.......  .|....-+.+..+. ++...+.++.+++....+..+.-...+....++.....|+++.|++
T Consensus       320 tnk~~q~r~~~a~lp~~--~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~  397 (652)
T KOG2376|consen  320 TNKMDQVRELSASLPGM--SPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALE  397 (652)
T ss_pred             hhhHHHHHHHHHhCCcc--CchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHH
Confidence            34444555444443322  33433333333333 2333678888998888876555445666777888899999999999


Q ss_pred             HHH--------HHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          554 ILD--------ELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR------EREIPGKIRTALINALRKAGNADL  619 (650)
Q Consensus       554 ~~~--------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~~~~~l~~~~~~~g~~~~  619 (650)
                      ++.        .+.+.+ ..+.+...+...+.+.++.+-|..++.++++.      +-..-...+..++..-.+.|+.++
T Consensus       398 il~~~~~~~~ss~~~~~-~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~e  476 (652)
T KOG2376|consen  398 ILSLFLESWKSSILEAK-HLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEE  476 (652)
T ss_pred             HHHHHhhhhhhhhhhhc-cChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHH
Confidence            999        443332 14566677777788877766666666665532      101122344455566677899999


Q ss_pred             HHHHHHHHHHCCCCChhhhhhhhccc
Q 045674          620 AIKLMHSKIGVGYDRMGSIKRRVKFR  645 (650)
Q Consensus       620 A~~~~~~~~~~~~~~~~~~~~~~~~~  645 (650)
                      |..+++++.+..+....++-.+|.-.
T Consensus       477 a~s~leel~k~n~~d~~~l~~lV~a~  502 (652)
T KOG2376|consen  477 ASSLLEELVKFNPNDTDLLVQLVTAY  502 (652)
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            99999999998887766666665433

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.49  E-value=1.9e-10  Score=115.08  Aligned_cols=131  Identities=21%  Similarity=0.177  Sum_probs=100.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                      ++..+...|...|++++|++++++++++.+. .+..|..-++.+-+.|++.+|.+.++.+.+.+..|..+-+..+..+.+
T Consensus       196 ~~~~lAqhyd~~g~~~~Al~~Id~aI~htPt-~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LR  274 (517)
T PF12569_consen  196 TLYFLAQHYDYLGDYEKALEYIDKAIEHTPT-LVELYMTKARILKHAGDLKEAAEAMDEARELDLADRYINSKCAKYLLR  274 (517)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChhhHHHHHHHHHHHHH
Confidence            4455667777888888999988888887443 467788888888888999999999998888888788887888888888


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCH------HHH--HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          579 TGRIKEACKLADGIVDREREIPG------KIR--TALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       579 ~g~~~~A~~~~~~~~~~~~~~~~------~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .|++++|.+++....+.+..+..      .+|  ...+.+|.+.|++..|++.|..+.+.
T Consensus       275 a~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k~  334 (517)
T PF12569_consen  275 AGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAVLKH  334 (517)
T ss_pred             CCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHH
Confidence            89999998888888765532211      233  34577888889999888888877653

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.48  E-value=6.1e-11  Score=116.99  Aligned_cols=237  Identities=20%  Similarity=0.123  Sum_probs=167.2

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C--C
Q 045674          393 VTYGVIISGLCKNERLEEAMQYFEFCRAN-----GV-AVNA-MFYSSLIDGLGKAGRVDEAEELFEEMVEK-----G--C  458 (650)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~--~  458 (650)
                      .+...+...|...|+++.|..+++...+.     |. .+.. ...+.+...|...+++++|..+|++++..     |  .
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h  279 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDH  279 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCC
Confidence            34455666777777777777777655443     11 1122 22334667788888888888888888762     2  1


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CC
Q 045674          459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDE-----GCD-QTV-YTYTILINGMFKEHRNEEALKLWDMMIDK---GI  528 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~-~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~  528 (650)
                      +.-..+++.|...|.+.|++++|...++++.+.     +.. |.+ ..++.++..+...+++++|..++++..+.   -+
T Consensus       280 ~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~  359 (508)
T KOG1840|consen  280 PAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAP  359 (508)
T ss_pred             HHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhc
Confidence            222356777888888999988888887776431     111 222 23556667788899999999998877642   12


Q ss_pred             CCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC----C-C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-
Q 045674          529 TPT----AASFRALSIGLCLSGKVARACKILDELAPKG----I-I---PETAFEDMITCLCKTGRIKEACKLADGIVDR-  595 (650)
Q Consensus       529 ~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-  595 (650)
                      .++    ..++..|++.|...|++++|.+++++++...    . .   ....++.++..|.+.+++.+|.++|.+.... 
T Consensus       360 g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~  439 (508)
T KOG1840|consen  360 GEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIM  439 (508)
T ss_pred             cccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHH
Confidence            222    3578899999999999999999999998532    1 1   3567888999999999999999988876543 


Q ss_pred             ---C--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          596 ---E--REIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       596 ---~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                         |  .+.-..+|..|+.+|...|++++|+++.+.++.
T Consensus       440 ~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  440 KLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             HHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence               2  122346788999999999999999999998873

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.48  E-value=5.7e-11  Score=100.69  Aligned_cols=199  Identities=15%  Similarity=0.074  Sum_probs=150.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA  473 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (650)
                      +...+.-.|...|+...|..-+++.++.++. +..++..+...|.+.|+.+.|.+.|+..++.. |.+..+.|..+..+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHH
Confidence            4556666788888888888888888887765 67778888888888888888888888888875 667778888888888


Q ss_pred             HcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ..|++++|...|++....-. ..-..+|..++.+..+.|+.+.|...|++.++..+. .......+.......|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            88888888888888876411 123456777777777888888888888888876544 4556667778888888888888


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .+++.....+....+.+...++.-...|+.+.|.++=..+...
T Consensus       194 ~~~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~  236 (250)
T COG3063         194 LYLERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL  236 (250)
T ss_pred             HHHHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence            8888888777667777777777777888877776665555443

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.46  E-value=1.3e-09  Score=109.60  Aligned_cols=101  Identities=16%  Similarity=0.144  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTAL  607 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l  607 (650)
                      ..|..++..+....+.+.|..+.++.......   +..-+..+.+.+.+.+....+.++++++.+.-...+  ..++..+
T Consensus       492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~  571 (1088)
T KOG4318|consen  492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL  571 (1088)
T ss_pred             hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence            45667777777888888888888887654332   555667788888888888888888887765421112  3344455


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          608 INALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       608 ~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+.....|+.+.-.++.+-+...|+.
T Consensus       572 lns~a~agqqe~Lkkl~d~lvslgl~  597 (1088)
T KOG4318|consen  572 LNSGAPAGQQEKLKKLADILVSLGLS  597 (1088)
T ss_pred             HhhhhhccCHHHHHHHHHHHHHhhhh
Confidence            66667777777777776666655553

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.46  E-value=1e-10  Score=111.10  Aligned_cols=233  Identities=15%  Similarity=0.002  Sum_probs=154.4

Q ss_pred             CCHHHHHHHHHHHHHCC-CCCC--HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674          371 GSMNEAINIFERMKYEG-VEPD--EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE  447 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~-~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  447 (650)
                      +..+.++.-+.++.... ..|+  ...|..+...+...|+.++|...|++..+..+. +...|+.++..+...|++++|.
T Consensus        40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~  118 (296)
T PRK11189         40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAY  118 (296)
T ss_pred             hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHH
Confidence            45666777776666431 1222  345666777788888888888888888887665 6788888888888889999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          448 ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG  527 (650)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  527 (650)
                      ..|+..++.. |.+...+..++.++...|++++|.+.|++..+..+. +. ........+...+++++|...+++.....
T Consensus       119 ~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~~  195 (296)
T PRK11189        119 EAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEKL  195 (296)
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhhC
Confidence            8888888864 556778888888888889999999988888876443 22 11222222345678888988887765432


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674          528 ITPTAASFRALSIGLCLSGKVARACKILDELAP-------KGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP  600 (650)
Q Consensus       528 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  600 (650)
                       .++...   ........|+..++ +.++.+.+       .++...++|..++.++...|++++|+..|+++++.+.+..
T Consensus       196 -~~~~~~---~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~  270 (296)
T PRK11189        196 -DKEQWG---WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNF  270 (296)
T ss_pred             -CccccH---HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchH
Confidence             222211   12233345655443 23333332       2223457888999999999999999999999998763333


Q ss_pred             HHHHHHHHHHHH
Q 045674          601 GKIRTALINALR  612 (650)
Q Consensus       601 ~~~~~~l~~~~~  612 (650)
                      .+....++....
T Consensus       271 ~e~~~~~~e~~~  282 (296)
T PRK11189        271 VEHRYALLELAL  282 (296)
T ss_pred             HHHHHHHHHHHH
Confidence            333344444433

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.45  E-value=6.3e-11  Score=112.55  Aligned_cols=221  Identities=15%  Similarity=-0.001  Sum_probs=164.9

Q ss_pred             cCCHHHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          405 NERLEEAMQYFEFCRANGV---AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA  481 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  481 (650)
                      .+..+.++..+.+++....   ......|..++..|...|+.++|...|++.++.. |.+...|+.++..+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence            4566778888887775422   2234568888889999999999999999999985 77899999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      ...|++.++..+. +..+|..++.++...|++++|++.+++..+..+. +. ........+...++.++|...+.+....
T Consensus       118 ~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~-~~-~~~~~~~l~~~~~~~~~A~~~l~~~~~~  194 (296)
T PRK11189        118 YEAFDSVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPN-DP-YRALWLYLAESKLDPKQAKENLKQRYEK  194 (296)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CH-HHHHHHHHHHccCCHHHHHHHHHHHHhh
Confidence            9999999987654 6778888999999999999999999999986544 32 1112222234578899999999876644


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDR---ER---EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ...+  .|. .+.+....|+..++ +.++.+.+.   ..   +....+|..++..+.+.|++++|+..|+++++.++.
T Consensus       195 ~~~~--~~~-~~~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~  268 (296)
T PRK11189        195 LDKE--QWG-WNIVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVY  268 (296)
T ss_pred             CCcc--ccH-HHHHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCc
Confidence            3222  222 23444456665444 244444321   10   224568999999999999999999999999998753

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.40  E-value=3.1e-09  Score=95.30  Aligned_cols=318  Identities=12%  Similarity=0.061  Sum_probs=167.1

Q ss_pred             ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHH
Q 045674          251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH-AYNLVI  329 (650)
Q Consensus       251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~l~  329 (650)
                      ++.-..-+...+...|++.+|+..|....+.+ +.+-.++..-...|...|+-..|+.-+...++.  .||-. ....-.
T Consensus        37 dvekhlElGk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg  113 (504)
T KOG0624|consen   37 DVEKHLELGKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRG  113 (504)
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhc
Confidence            34445555666666666666666666665532 112222333344555566666666655555554  22321 112223


Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674          330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE  409 (650)
Q Consensus       330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  409 (650)
                      ..+.+.|.+++|..-|+.+++..  |+..+   ...++.+.-..++-.                .....+..+...|+..
T Consensus       114 ~vllK~Gele~A~~DF~~vl~~~--~s~~~---~~eaqskl~~~~e~~----------------~l~~ql~s~~~~GD~~  172 (504)
T KOG0624|consen  114 VVLLKQGELEQAEADFDQVLQHE--PSNGL---VLEAQSKLALIQEHW----------------VLVQQLKSASGSGDCQ  172 (504)
T ss_pred             hhhhhcccHHHHHHHHHHHHhcC--CCcch---hHHHHHHHHhHHHHH----------------HHHHHHHHHhcCCchh
Confidence            34555666666666666555542  11100   000111100001111                1122233344556666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME  489 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  489 (650)
                      .|+..+..+++..+- +...|..-..+|...|++..|+.-++...+.. ..+...+..+...+...|+.+.++...++.+
T Consensus       173 ~ai~~i~~llEi~~W-da~l~~~Rakc~i~~~e~k~AI~Dlk~askLs-~DnTe~~ykis~L~Y~vgd~~~sL~~iRECL  250 (504)
T KOG0624|consen  173 NAIEMITHLLEIQPW-DASLRQARAKCYIAEGEPKKAIHDLKQASKLS-QDNTEGHYKISQLLYTVGDAENSLKEIRECL  250 (504)
T ss_pred             hHHHHHHHHHhcCcc-hhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            666666666665433 55566666666666666666666666655543 4555566666666666666666666666666


Q ss_pred             HcCCCCCHHH----HHHH---------HHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCHHHHHH
Q 045674          490 DEGCDQTVYT----YTIL---------INGMFKEHRNEEALKLWDMMIDKGITPTAA---SFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       490 ~~~~~~~~~~----~~~l---------~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~~~A~~  553 (650)
                      +.+  ||...    |-.|         +......++|.++++-.+...+..+.-...   .+..+-.++...|++.+|+.
T Consensus       251 Kld--pdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiq  328 (504)
T KOG0624|consen  251 KLD--PDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQ  328 (504)
T ss_pred             ccC--cchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHH
Confidence            542  23211    1000         111234566666666666666553331111   23344455556677777777


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .-.++++..+.+..++..-+.+|.-...+++|+.-|+++.+.+
T Consensus       329 qC~evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n  371 (504)
T KOG0624|consen  329 QCKEVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN  371 (504)
T ss_pred             HHHHHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence            7777777766677777777777777777777777777777665

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=99.39  E-value=4.8e-09  Score=100.17  Aligned_cols=238  Identities=14%  Similarity=0.050  Sum_probs=160.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH-------H
Q 045674          360 YTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS-------S  432 (650)
Q Consensus       360 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------~  432 (650)
                      ...++....+..+++.|++.+....+..  -+..-++....+|...|.+.+.+...+...+.|-. ...-|+       .
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r  303 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALAR  303 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHH
Confidence            3456777777788888888888877653  34445566666777888777777777666655433 222222       2


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR  512 (650)
Q Consensus       433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  512 (650)
                      +..+|.+.++++.|+..|.+.+.....|+         ...+....+++.+..+...-.++.. ..-...-+..+.+.|+
T Consensus       304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gd  373 (539)
T KOG0548|consen  304 LGNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGD  373 (539)
T ss_pred             hhhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccC
Confidence            34466667788888888888776542322         2223344455555544443333221 1122223566778888


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      +..|+..|.++++..+. |...|...+-+|.+.|.+..|++-.+..++.+|.....|..-+.++....+|++|.+.|.+.
T Consensus       374 y~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  374 YPEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            88888888888887654 77788888888888888888888888888888887888888888888888888898888888


Q ss_pred             HHcCCCCCHHHHHHHHHHHH
Q 045674          593 VDREREIPGKIRTALINALR  612 (650)
Q Consensus       593 ~~~~~~~~~~~~~~l~~~~~  612 (650)
                      ++.+ +.+..+...+..+..
T Consensus       453 le~d-p~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  453 LELD-PSNAEAIDGYRRCVE  471 (539)
T ss_pred             HhcC-chhHHHHHHHHHHHH
Confidence            8876 445555555554443

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.38  E-value=1.3e-08  Score=103.79  Aligned_cols=454  Identities=12%  Similarity=0.000  Sum_probs=230.0

Q ss_pred             chhhhHHHHHHhhcCCCChH-HHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 045674           93 DMEANLDSFCRKFLIKLSPN-FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFN  171 (650)
Q Consensus        93 ~~~~al~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  171 (650)
                      +...++..+.++.....+-. .+..+-..+....+...|.+.|+.+...  ...+..+...++..|++..+++.|..+.-
T Consensus       473 ~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l  550 (1238)
T KOG1127|consen  473 NSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICL  550 (1238)
T ss_pred             hHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHH
Confidence            34555666665544433321 2222223333333566677777766543  23455666677777777777777777744


Q ss_pred             HHHHCCCCCC--HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCC
Q 045674          172 ELKEKGFLMT--VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVG  249 (650)
Q Consensus       172 ~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~  249 (650)
                      ..-+.. +.-  ...|..+.-.|...++...|+.-|+......+ .|...|..+..+|..+|++..|.++|.++...  .
T Consensus       551 ~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dP-kD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L--r  626 (1238)
T KOG1127|consen  551 RAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDP-KDYNLWLGLGEAYPESGRYSHALKVFTKASLL--R  626 (1238)
T ss_pred             HHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCc-hhHHHHHHHHHHHHhcCceehHHHhhhhhHhc--C
Confidence            443332 111  12233344456667777777777777776542 36777778888888888888888888777654  2


Q ss_pred             CC-hhhHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------
Q 045674          250 PD-VVTYNTMIKGYCKVGKTQKAMEKFRAMEARN------VQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE-------  315 (650)
Q Consensus       250 ~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------  315 (650)
                      |+ ...---.....+..|.+.+|+..+.......      ...-..++..+...+...|-..++.+.++.-++       
T Consensus       627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~  706 (1238)
T KOG1127|consen  627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI  706 (1238)
T ss_pred             cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence            32 2222222344556677888877777665321      111122333333333333333333333332221       


Q ss_pred             CCCCCCHHHHHHHHHHH-----------------------HhcCCh---H---HHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674          316 KGIEIPSHAYNLVIGGL-----------------------CKVGKC---I---EGHAIFESMIRRGCQPNVAIYTALIDS  366 (650)
Q Consensus       316 ~~~~~~~~~~~~l~~~~-----------------------~~~g~~---~---~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (650)
                      .....+...|..+...+                       -..+..   +   -+.+.+-.-++  ...+...|..|+..
T Consensus       707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--l~~~~~~WyNLGin  784 (1238)
T KOG1127|consen  707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--LAIHMYPWYNLGIN  784 (1238)
T ss_pred             HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--HhhccchHHHHhHH
Confidence            11111111111111111                       111111   0   00011100011  01123345555555


Q ss_pred             HHh--------cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          367 YAK--------LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG  438 (650)
Q Consensus       367 ~~~--------~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  438 (650)
                      |.+        ..+...|+..+.+.++.. ..+..+|+.+... ...|++.-+...|-+.....+. +..+|..+.-.+.
T Consensus       785 ylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~-~~~~W~NlgvL~l  861 (1238)
T KOG1127|consen  785 YLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT-CHCQWLNLGVLVL  861 (1238)
T ss_pred             HHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc-chhheeccceeEE
Confidence            544        122346777777766542 2256677776654 5556676666666555554443 6667777777788


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED----EGCDQTVYTYTILINGMFKEHRNE  514 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~~~~~l~~~~~~~~~~~  514 (650)
                      +..+++.|...|....... |.|...|..........|+.-++..+|..--.    .|-.++..-|..-.......|+.+
T Consensus       862 ~n~d~E~A~~af~~~qSLd-P~nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e  940 (1238)
T KOG1127|consen  862 ENQDFEHAEPAFSSVQSLD-PLNLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIE  940 (1238)
T ss_pred             ecccHHHhhHHHHhhhhcC-chhhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchH
Confidence            8888888888888877764 66667776666666667777777777665211    122233333333333333444444


Q ss_pred             HHHHHHHH----------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          515 EALKLWDM----------MIDKGITPTAASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       515 ~A~~~~~~----------~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      +-+...++          ... +...+...|...+...-+.+.+.+|.+...+++
T Consensus       941 ~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  941 ESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33322222          121 122244455555555555555655555555443

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.37  E-value=5.9e-10  Score=110.15  Aligned_cols=235  Identities=19%  Similarity=0.188  Sum_probs=145.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC--C
Q 045674          360 YTALIDSYAKLGSMNEAINIFERMKYE-----GV-EPDEV-TYGVIISGLCKNERLEEAMQYFEFCRAN-----GVA--V  425 (650)
Q Consensus       360 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~--~  425 (650)
                      ...+...|...|++++|..+++...+.     |. .|... ..+.+...|...+++++|..+|+++...     |..  .
T Consensus       202 ~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~  281 (508)
T KOG1840|consen  202 LRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPA  281 (508)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHH
Confidence            333555555555555555555544321     10 12222 2223555566666666666666655432     211  1


Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEK-----G-CPRD-SYCYNVLIDALAKCGKLDEALALFKRMEDE-----GC  493 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~  493 (650)
                      -..+++.|..+|.+.|++++|...++++++.     + ..+. ...++.++..++..+++++|..+++...+.     |.
T Consensus       282 va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~  361 (508)
T KOG1840|consen  282 VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGE  361 (508)
T ss_pred             HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccc
Confidence            2345566666677777777777666665542     1 0111 123456667777788888888887766442     11


Q ss_pred             C--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----C-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhh----
Q 045674          494 D--QTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----G-ITP-TAASFRALSIGLCLSGKVARACKILDELAP----  560 (650)
Q Consensus       494 ~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~-~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----  560 (650)
                      .  --..+++.|...|...|++++|.+++++++..     | ..+ ....++.++..|.+.+++++|.++|.+...    
T Consensus       362 ~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~  441 (508)
T KOG1840|consen  362 DNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKL  441 (508)
T ss_pred             cchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHH
Confidence            1  12457888888888899999999888888742     1 111 234677888888888888888888887653    


Q ss_pred             CCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          561 KGII---PETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       561 ~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      .|+.   ....|..|+.+|...|++++|.++.+.+..
T Consensus       442 ~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~  478 (508)
T KOG1840|consen  442 CGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN  478 (508)
T ss_pred             hCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            3444   346788899999999999999999888763

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.36  E-value=6.2e-10  Score=111.86  Aligned_cols=90  Identities=20%  Similarity=0.260  Sum_probs=64.6

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC
Q 045674          204 VWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNV  283 (650)
Q Consensus       204 ~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  283 (650)
                      ++..+...|+.|+..||..++.-|+..|+++.|- +|..|.....+.+...++.++.+....++.+.+.           
T Consensus        12 fla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------   79 (1088)
T KOG4318|consen   12 FLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------   79 (1088)
T ss_pred             HHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------
Confidence            4455666677777777777777777777777777 7777766666667777777777777777766664           


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH
Q 045674          284 QPDKITYMTLIQACYLEGDFDS  305 (650)
Q Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~  305 (650)
                      .|...+|..|..+|...||...
T Consensus        80 ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   80 EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             CCchhHHHHHHHHHHhccchHH
Confidence            4566777777777777777544

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=99.36  E-value=2.2e-08  Score=102.27  Aligned_cols=478  Identities=12%  Similarity=0.005  Sum_probs=242.7

Q ss_pred             CChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHH
Q 045674          125 KRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWV  204 (650)
Q Consensus       125 ~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  204 (650)
                      ++...|+..|-.+.+..  +.-..+|..++..|...-+...|.+.|+.+-+.+ +.+...+......|++..+++.|..+
T Consensus       472 K~~~~al~ali~alrld--~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  472 KNSALALHALIRALRLD--VSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             hhHHHHHHHHHHHHhcc--cchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHH
Confidence            34566666666665542  2334577888888887778888888888888775 55677788888888888888888887


Q ss_pred             HHHHHHCCCCCCHHH--HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 045674          205 WRSMKENGIEPSLYT--YNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARN  282 (650)
Q Consensus       205 ~~~~~~~~~~~~~~~--~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  282 (650)
                      .-...+.. +.-...  |..+.-.+...++...|..-|+...... +.|...|..++.+|.+.|++..|.++|.+.... 
T Consensus       549 ~l~~~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~L-  625 (1238)
T KOG1127|consen  549 CLRAAQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLL-  625 (1238)
T ss_pred             HHHHhhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhc-
Confidence            33332221 111112  2223334566778888888888887654 457888888888888888888888888887764 


Q ss_pred             CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc----
Q 045674          283 VQPD-KITYMTLIQACYLEGDFDSCLSLYHEMDEKG------IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR----  351 (650)
Q Consensus       283 ~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----  351 (650)
                       .|+ ...-.......+..|.+.+++..+..+....      ..--..++..+...+...|-...+.+.++..++.    
T Consensus       626 -rP~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~  704 (1238)
T KOG1127|consen  626 -RPLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVS  704 (1238)
T ss_pred             -CcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHH
Confidence             333 2333333445567888888888887765431      1111233334444444455555555555544432    


Q ss_pred             ---CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH---H---HHHHHHHHHHHCC
Q 045674          352 ---GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL---E---EAMQYFEFCRANG  422 (650)
Q Consensus       352 ---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~---~---~a~~~~~~~~~~~  422 (650)
                         ....+...|-.+..+          ..+|-+... . .|+......+..-.-..+..   +   -+.+.+-.-.+  
T Consensus       705 l~h~~~~~~~~Wi~asda----------c~~f~q~e~-~-~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hls--  770 (1238)
T KOG1127|consen  705 LIHSLQSDRLQWIVASDA----------CYIFSQEEP-S-IVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLS--  770 (1238)
T ss_pred             HHHhhhhhHHHHHHHhHH----------HHHHHHhcc-c-chHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHH--
Confidence               111122223222222          112222110 0 11111111111111111111   0   00011100000  


Q ss_pred             CCCCHHHHHHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          423 VAVNAMFYSSLIDGLGK--------AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD  494 (650)
Q Consensus       423 ~~~~~~~~~~l~~~~~~--------~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  494 (650)
                      ...+...|..++..|.+        ..+...|+..+...++.. ..+..+|+.|... ...|++.-+.-.|-+-....+.
T Consensus       771 l~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~KkaV~L~-ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~  848 (1238)
T KOG1127|consen  771 LAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKKAVSLC-ANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPT  848 (1238)
T ss_pred             HhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHHHHHHh-hccHHHHHHHHHh-hccchhhhhhhhhhhhhhcccc
Confidence            00012222223322222        112335566666665543 4455556655544 4445565555555555444332


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh--hCCCC---cHHHH
Q 045674          495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA--PKGII---PETAF  569 (650)
Q Consensus       495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~---~~~~~  569 (650)
                       ...+|..+...+....+++.|...|.+.+...+. +...|..........|+.-++..+|..-.  ..+-.   ....|
T Consensus       849 -~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~-nl~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw  926 (1238)
T KOG1127|consen  849 -CHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPL-NLVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYW  926 (1238)
T ss_pred             -chhheeccceeEEecccHHHhhHHHHhhhhcCch-hhHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHH
Confidence             4555666666666666666666666666654332 33344333333345566666666655522  11111   22223


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHH----------HHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          570 EDMITCLCKTGRIKEACKLADGI----------VDREREIPGKIRTALINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~----------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                      .+........|+.++-+...+++          .. +.+....+|...+...-+.+.+.+|.++..+++
T Consensus       927 ~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~-~~p~~~fAy~~~gstlEhL~ey~~a~ela~Rli  994 (1238)
T KOG1127|consen  927 LCATEIHLQNGNIEESINTARKISSASLALSYYFL-GHPQLCFAYAANGSTLEHLEEYRAALELATRLI  994 (1238)
T ss_pred             HHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHh-cCcchhHHHHHHHhHHHHHHHHHHHHHHHHHHH
Confidence            33333334444444433332222          22 224445555555655666666666666555544

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.36  E-value=2.4e-07  Score=104.19  Aligned_cols=373  Identities=11%  Similarity=-0.008  Sum_probs=204.5

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          257 TMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVG  336 (650)
Q Consensus       257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  336 (650)
                      .....+...|++.+|...+......  ..-..............|+++.+...++.+.......+..........+...|
T Consensus       346 raa~~~~~~g~~~~Al~~a~~a~d~--~~~~~ll~~~a~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g  423 (903)
T PRK04841        346 AAAEAWLAQGFPSEAIHHALAAGDA--QLLRDILLQHGWSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQH  423 (903)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHCCCH--HHHHHHHHHhHHHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCC
Confidence            3344555666666665544433110  00001111222334456677766666655421111112222334444556677


Q ss_pred             ChHHHHHHHHHHHHcCC------CcC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HhHHHHHHHHHh
Q 045674          337 KCIEGHAIFESMIRRGC------QPN--VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE----VTYGVIISGLCK  404 (650)
Q Consensus       337 ~~~~a~~~~~~~~~~~~------~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~  404 (650)
                      +++++...+....+.--      .+.  ......+...+...|++++|...+++....-...+.    ...+.+...+..
T Consensus       424 ~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~  503 (903)
T PRK04841        424 RYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHC  503 (903)
T ss_pred             CHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHH
Confidence            88888877776654310      111  112222344556778888888888776653111111    233445556677


Q ss_pred             cCCHHHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC---CCHHHHHHHHHHH
Q 045674          405 NERLEEAMQYFEFCRAN----GV-AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK----GCP---RDSYCYNVLIDAL  472 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~---~~~~~~~~l~~~~  472 (650)
                      .|++++|...+++....    +. ......+..+...+...|++++|...+++....    +..   .....+..+...+
T Consensus       504 ~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~  583 (903)
T PRK04841        504 KGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLL  583 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHH
Confidence            88888888887766532    11 111234445566677788888888887776552    211   1123344556666


Q ss_pred             HHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--CCCCHHH---H-HHHHHHH
Q 045674          473 AKCGKLDEALALFKRMEDE----GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG--ITPTAAS---F-RALSIGL  542 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~p~~~~---~-~~l~~~~  542 (650)
                      ...|++++|...+++....    +.......+..+...+...|++++|...++++....  .......   . ...+..+
T Consensus       584 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~  663 (903)
T PRK04841        584 WEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYW  663 (903)
T ss_pred             HHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHH
Confidence            7778888888887776542    111123334445556677888888888877775321  1101100   0 0112334


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 045674          543 CLSGKVARACKILDELAPKGIIPE----TAFEDMITCLCKTGRIKEACKLADGIVDR----EREI-PGKIRTALINALRK  613 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~  613 (650)
                      ...|+.+.|..++...........    ..+..++.++...|++++|...+++++..    +... ...++..++.++..
T Consensus       664 ~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~  743 (903)
T PRK04841        664 QMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQ  743 (903)
T ss_pred             HHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence            457788888888776654322211    12456777778888888888888877654    1111 12355667777888


Q ss_pred             cCCHHHHHHHHHHHHHCC
Q 045674          614 AGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       614 ~g~~~~A~~~~~~~~~~~  631 (650)
                      .|+.++|...+.++++..
T Consensus       744 ~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        744 QGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             cCCHHHHHHHHHHHHHHh
Confidence            888888888888887754

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=99.35  E-value=3.5e-08  Score=88.72  Aligned_cols=317  Identities=10%  Similarity=0.058  Sum_probs=171.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH-HHHHHHHHHhcCC
Q 045674          224 MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT-YMTLIQACYLEGD  302 (650)
Q Consensus       224 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-~~~l~~~~~~~~~  302 (650)
                      ...+...|++..|+.-|...++.. +.+-.++..-...|...|+...|+.-+.+.++.  +||-.. ...-...+.+.|.
T Consensus        45 Gk~lla~~Q~sDALt~yHaAve~d-p~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vllK~Ge  121 (504)
T KOG0624|consen   45 GKELLARGQLSDALTHYHAAVEGD-PNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVLLKQGE  121 (504)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHcCC-chhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhhhhccc
Confidence            334444455555555555544331 112222333334455555555555555555442  444321 1222334445555


Q ss_pred             HHHHHHHHHHHHHCCCCCCH--------------HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 045674          303 FDSCLSLYHEMDEKGIEIPS--------------HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYA  368 (650)
Q Consensus       303 ~~~a~~~~~~~~~~~~~~~~--------------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (650)
                      ++.|..-|+.++........              ......+..+...|+...|+.....+++..+ -|...|..-..+|.
T Consensus       122 le~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~-Wda~l~~~Rakc~i  200 (504)
T KOG0624|consen  122 LEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQP-WDASLRQARAKCYI  200 (504)
T ss_pred             HHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCc-chhHHHHHHHHHHH
Confidence            55555555555544221110              0111223334445666666666666665522 25555555566666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      ..|++..|+.-++...+..-. +..++.-+-..+...|+.+.++..+++.++.++.  ...+.   -.|-   .+.+..+
T Consensus       201 ~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iRECLKldpd--HK~Cf---~~YK---klkKv~K  271 (504)
T KOG0624|consen  201 AEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIRECLKLDPD--HKLCF---PFYK---KLKKVVK  271 (504)
T ss_pred             hcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHHHccCcc--hhhHH---HHHH---HHHHHHH
Confidence            666666666655555443212 3344444455556666666666666666554332  21110   0011   1122222


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT---YTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      .++.|.+                ....++|.++++-.+...+..+......   +..+-.++...+++.+|++...++++
T Consensus       272 ~les~e~----------------~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~  335 (504)
T KOG0624|consen  272 SLESAEQ----------------AIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLD  335 (504)
T ss_pred             HHHHHHH----------------HHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHh
Confidence            2222221                3356778888888888877654423333   33445566788999999999999988


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHH
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFE  570 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  570 (650)
                      ..+. |..++..-+.+|.-...+++|+.-|+.+.+.+..+..+-.
T Consensus       336 ~d~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~re  379 (504)
T KOG0624|consen  336 IDPD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRARE  379 (504)
T ss_pred             cCch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHHH
Confidence            5332 5888988999999999999999999999998877655433

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.33  E-value=1.1e-10  Score=112.02  Aligned_cols=220  Identities=15%  Similarity=0.109  Sum_probs=131.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          404 KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALA  483 (650)
Q Consensus       404 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  483 (650)
                      +.|++.+|.-.|+..++.++. +...|..|+......++-..|+..+++.++.+ |.+......|+..|...|.-.+|++
T Consensus       297 ~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~Al~  374 (579)
T KOG1125|consen  297 KNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQALK  374 (579)
T ss_pred             hcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHHHHH
Confidence            344444444444444444333 44444444444444444444444444444443 3344444444444444444444444


Q ss_pred             HHHHHHHcCCCCCHHHHHHHH-----------HHHHhcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          484 LFKRMEDEGCDQTVYTYTILI-----------NGMFKEHRNEEALKLWDMMI-DKGITPTAASFRALSIGLCLSGKVARA  551 (650)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~l~-----------~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~~~l~~~~~~~g~~~~A  551 (650)
                      .++.-+...++     |..+.           ..+.....+.+..++|-++. ..+..+|+.+...|+-.|.-.|++++|
T Consensus       375 ~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdra  449 (579)
T KOG1125|consen  375 MLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRA  449 (579)
T ss_pred             HHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHH
Confidence            44444332111     00000           01111122334444444444 444446777888888888888888888


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  631 (650)
                      .+.|+.++...|.|..+|+.||-.+....+.++|+..|.++++.. |.-..++..++-+|...|.|++|.+.|-.++...
T Consensus       450 iDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLq-P~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq  528 (579)
T KOG1125|consen  450 VDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQ-PGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQ  528 (579)
T ss_pred             HHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcC-CCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhh
Confidence            888888888888888888888888888888888888888888874 4456677888888888888888888888877653

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.31  E-value=2.4e-08  Score=99.12  Aligned_cols=304  Identities=17%  Similarity=0.071  Sum_probs=166.8

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCC-CcCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHH
Q 045674          324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGC-QPNV-AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPD-EVTYGVIIS  400 (650)
Q Consensus       324 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~  400 (650)
                      .+..+...+...|+.+.+...+....+... ..+. .........+...|++++|.++++++.+.  .|+ ...+.. ..
T Consensus         8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~-~~   84 (355)
T cd05804           8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL-HL   84 (355)
T ss_pred             HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH-hH
Confidence            344444444445555554444444433211 1121 11112233455567777777777776654  232 223321 11


Q ss_pred             HHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674          401 GLC----KNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG  476 (650)
Q Consensus       401 ~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  476 (650)
                      .+.    ..+..+.+.+.+...... ..........+...+...|++++|...+++..+.. +.+...+..+..+|...|
T Consensus        85 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g  162 (355)
T cd05804          85 GAFGLGDFSGMRDHVARVLPLWAPE-NPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG  162 (355)
T ss_pred             HHHHhcccccCchhHHHHHhccCcC-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence            222    233444444444431111 11133444456667777888888888888888764 556667777778888888


Q ss_pred             CHHHHHHHHHHHHHcCCC-CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHH-H--HHHHHHHhcCCHH
Q 045674          477 KLDEALALFKRMEDEGCD-QT--VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASF-R--ALSIGLCLSGKVA  549 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~-~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~-~--~l~~~~~~~g~~~  549 (650)
                      ++++|+..+++..+.... ++  ...|..+...+...|++++|..+++++...... +..... +  .+.+-+...|...
T Consensus       163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~  242 (355)
T cd05804         163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVD  242 (355)
T ss_pred             CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCC
Confidence            888888888877765321 22  234556677777888888888888887643221 111111 1  2333334445433


Q ss_pred             HHHHH--H-HHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--------CCHHHHHHHHHHHHhcCC
Q 045674          550 RACKI--L-DELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDRERE--------IPGKIRTALINALRKAGN  616 (650)
Q Consensus       550 ~A~~~--~-~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--------~~~~~~~~l~~~~~~~g~  616 (650)
                      .+.++  + .......+.  ......+.+.++...|+.++|..+++.+......        .........+.++...|+
T Consensus       243 ~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~  322 (355)
T cd05804         243 VGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGN  322 (355)
T ss_pred             hHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCC
Confidence            33333  1 111111111  1222235777788888999999888887653311        012333455666788999


Q ss_pred             HHHHHHHHHHHHHCCC
Q 045674          617 ADLAIKLMHSKIGVGY  632 (650)
Q Consensus       617 ~~~A~~~~~~~~~~~~  632 (650)
                      +++|.+.+..++..+.
T Consensus       323 ~~~A~~~L~~al~~a~  338 (355)
T cd05804         323 YATALELLGPVRDDLA  338 (355)
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999999988753

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PLN02789 farnesyltranstransferase

Probab=99.30  E-value=4.8e-09  Score=99.27  Aligned_cols=228  Identities=11%  Similarity=0.051  Sum_probs=162.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH--
Q 045674          402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKL--  478 (650)
Q Consensus       402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--  478 (650)
                      +...++.++|+..++++++.++. +..+|+.-..++...| ++++++..++++.+.. +.+..+|+....++.+.|+.  
T Consensus        47 l~~~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~~~  124 (320)
T PLN02789         47 YASDERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPDAA  124 (320)
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCchhh
Confidence            33456677777777777776555 5556666666666666 5678888888887764 66667777776666666653  


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CC----HHHH
Q 045674          479 DEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS---GK----VARA  551 (650)
Q Consensus       479 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~----~~~A  551 (650)
                      ++++.+++++++..++ +..+|+....++...|+++++++.++++++.++. +...|+..+.++.+.   |.    .+++
T Consensus       125 ~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~e  202 (320)
T PLN02789        125 NKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDSE  202 (320)
T ss_pred             HHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHHH
Confidence            5677778788777655 7788888887788888888888888888877665 666676666665544   22    2567


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC------------
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCKT----GRIKEACKLADGIVDREREIPGKIRTALINALRKAG------------  615 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------  615 (650)
                      +.+..+++...|.+..+|+.+..++...    ++..+|.+.+.++.+.+ +.+..++..|+..|....            
T Consensus       203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~l~d~~~~~~~~~~~~~~~~~~  281 (320)
T PLN02789        203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSDLLDLLCEGLQPTAEFRDTVDT  281 (320)
T ss_pred             HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHHHHHHHHhhhccchhhhhhhhc
Confidence            8888888888888888898888888773    45567888888877754 566777888888887532            


Q ss_pred             ------CHHHHHHHHHHHHHCCCCChh
Q 045674          616 ------NADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       616 ------~~~~A~~~~~~~~~~~~~~~~  636 (650)
                            ..++|.+++..+.  .++|..
T Consensus       282 ~~~~~~~~~~a~~~~~~l~--~~d~ir  306 (320)
T PLN02789        282 LAEELSDSTLAQAVCSELE--VADPMR  306 (320)
T ss_pred             cccccccHHHHHHHHHHHH--hhCcHH
Confidence                  3477888888883  445543

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=9.3e-09  Score=90.49  Aligned_cols=421  Identities=13%  Similarity=0.027  Sum_probs=219.8

Q ss_pred             HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHH-HHHHH
Q 045674          184 AANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNT-MIKGY  262 (650)
Q Consensus       184 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~  262 (650)
                      -+.+.+..+.+..+++.|++++....+.. +.+......|..+|....++..|...++++-..  .|...-|.. -...+
T Consensus        12 eftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSL   88 (459)
T KOG4340|consen   12 EFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSL   88 (459)
T ss_pred             chHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHH
Confidence            36667777778888888888888877763 226666777778888888888888888888754  455444443 34666


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 045674          263 CKVGKTQKAMEKFRAMEARNVQPDK--ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIE  340 (650)
Q Consensus       263 ~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  340 (650)
                      .+.+.+.+|+++...|...   ++.  .+...-.......+++..+..++++....|   +..+.+.......+.|++++
T Consensus        89 Y~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEa  162 (459)
T KOG4340|consen   89 YKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEA  162 (459)
T ss_pred             HHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHH
Confidence            7788888888888877642   122  122222233456778888888887765432   45556666666778888888


Q ss_pred             HHHHHHHHHHc-CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHh----HHHHHHHHHhcCCHHHHHHHH
Q 045674          341 GHAIFESMIRR-GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYF  415 (650)
Q Consensus       341 a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~----~~~l~~~~~~~g~~~~a~~~~  415 (650)
                      |.+-|+...+. |.. ....|+ +.-+..+.|+++.|+++..+++++|++-.+..    -.-.+++- ..|+.   ..+.
T Consensus       163 AvqkFqaAlqvsGyq-pllAYn-iALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvr-svgNt---~~lh  236 (459)
T KOG4340|consen  163 AVQKFQAALQVSGYQ-PLLAYN-LALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVR-SVGNT---LVLH  236 (459)
T ss_pred             HHHHHHHHHhhcCCC-chhHHH-HHHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchh-cccch---HHHH
Confidence            88888888875 444 344565 55566778888888888888888776421110    00000000 00000   0000


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD  494 (650)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  494 (650)
                          ..+   -...++.-...+.+.++++.|.+.+-.|.-+. ...|+.+...+.-.-. .+++.+..+-+.-+...++-
T Consensus       237 ----~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf  308 (459)
T KOG4340|consen  237 ----QSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF  308 (459)
T ss_pred             ----HHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC
Confidence                000   01223333344555666666666555553221 1234555544432211 23344444444444444333


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHH-hcCCHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674          495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLC-LSGKVARACKILDELAPKGIIPETAFEDM  572 (650)
Q Consensus       495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  572 (650)
                       -..||..++-.||+..-++-|..++.+-...... .+...| .++.++. ..-..++|.+-++.+...-  ........
T Consensus       309 -P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly-~LLdaLIt~qT~pEea~KKL~~La~~l--~~kLRklA  384 (459)
T KOG4340|consen  309 -PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLY-DLLDALITCQTAPEEAFKKLDGLAGML--TEKLRKLA  384 (459)
T ss_pred             -ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHH-HHHHHHHhCCCCHHHHHHHHHHHHHHH--HHHHHHHH
Confidence             2345555555566666666665555432211111 011111 1222222 2234445544444332210  00000000


Q ss_pred             HHHHH-HcCC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          573 ITCLC-KTGR----IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       573 ~~~~~-~~g~----~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      +.+-. +..+    ...|++-|++.++.-    -.+....++.|++..++..+.+.|+.-.+-.-+.+
T Consensus       385 i~vQe~r~~~dd~a~R~ai~~Yd~~LE~Y----LPVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ehd  448 (459)
T KOG4340|consen  385 IQVQEARHNRDDEAIRKAVNEYDETLEKY----LPVLMAQAKIYWNLEDYPMVEKIFRKSVEFCNDHD  448 (459)
T ss_pred             HHHHHHHhcccHHHHHHHHHHHHHHHHHH----HHHHHHHHHhhccccccHHHHHHHHHHHhhhcccc
Confidence            11111 1111    223334444444332    12344556667777788888877777666543333

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.30  E-value=9.9e-09  Score=90.34  Aligned_cols=416  Identities=13%  Similarity=0.075  Sum_probs=234.9

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHH-HHHHHHH
Q 045674          150 YISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYN-FLMNGLV  228 (650)
Q Consensus       150 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~ll~~~~  228 (650)
                      +.+.+.-+.+..++++|++++..-.++. +.+......|..+|....++..|...|+++...  .|...-|. .-...+.
T Consensus        13 ftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY   89 (459)
T KOG4340|consen   13 FTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLY   89 (459)
T ss_pred             hHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHH
Confidence            5566777789999999999998888775 557888999999999999999999999999875  45554443 3446778


Q ss_pred             hcCChhHHHHHHHHHhcCCCCCChhhHHH--HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          229 NSMFIESSELVFKVMENGKVGPDVVTYNT--MIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC  306 (650)
Q Consensus       229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  306 (650)
                      +.+.+..|..+...|.+.   ++...-..  -.......+++..+..+++.....|   +..+.+...-...+.|+++.|
T Consensus        90 ~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaA  163 (459)
T KOG4340|consen   90 KACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAA  163 (459)
T ss_pred             HhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHH
Confidence            899999999999988752   22221111  1223345688888888888876433   556666667777899999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHH----HHHHHHHHhcCCHHHHHHHHHH
Q 045674          307 LSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIY----TALIDSYAKLGSMNEAINIFER  382 (650)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~l~~~~~~~~~~~~A~~~~~~  382 (650)
                      .+-|+...+-+--.....|+. .-+..+.|+++.|.+...+++++|++..+..-    .-.+.+ ...|+.   +    .
T Consensus       164 vqkFqaAlqvsGyqpllAYni-ALaHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt---~----~  234 (459)
T KOG4340|consen  164 VQKFQAALQVSGYQPLLAYNL-ALAHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT---L----V  234 (459)
T ss_pred             HHHHHHHHhhcCCCchhHHHH-HHHHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch---H----H
Confidence            999999888654334455554 44566889999999999999999876322100    000000 000000   0    0


Q ss_pred             HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674          383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD  461 (650)
Q Consensus       383 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~  461 (650)
                      |...+   =...+|.-...+.+.|+++.|.+.+-.|.-+ .-..|+.|...+.-.- ..+++-+..+-+.-++... |--
T Consensus       235 lh~Sa---l~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP  309 (459)
T KOG4340|consen  235 LHQSA---LVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFP  309 (459)
T ss_pred             HHHHH---HHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCC
Confidence            00000   0112333334455666666666666555322 1223444444333211 1233334444444444443 344


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH-HH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA-LS  539 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~-l~  539 (650)
                      ..+|..++-.||+..-++.|-.++.+-...... .+...|+.|=......-..++|.+-++.+...-    ..-+.. .+
T Consensus       310 ~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l----~~kLRklAi  385 (459)
T KOG4340|consen  310 PETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGML----TEKLRKLAI  385 (459)
T ss_pred             hHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHH----HHHHHHHHH
Confidence            456666666666666666665555432111000 122222222211122334455544443332110    000000 01


Q ss_pred             HHH-HhcCC----HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          540 IGL-CLSGK----VARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       540 ~~~-~~~g~----~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ..- .+..+    ...|++-+++.++.   --.+....++.+|+..++..+.++|+...+-
T Consensus       386 ~vQe~r~~~dd~a~R~ai~~Yd~~LE~---YLPVlMa~AkiyW~~~Dy~~vEk~Fr~Svef  443 (459)
T KOG4340|consen  386 QVQEARHNRDDEAIRKAVNEYDETLEK---YLPVLMAQAKIYWNLEDYPMVEKIFRKSVEF  443 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHHHHHH---HHHHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence            110 01111    11222333333322   2334556778889999999999999988764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=7.9e-07  Score=89.28  Aligned_cols=471  Identities=13%  Similarity=0.101  Sum_probs=258.3

Q ss_pred             CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHc
Q 045674          123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKG--------FLMTVSAANSLIKSFGG  194 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~  194 (650)
                      .-|+.+.|.+-.+.+.       +..+|..++.++.+.+++|-|.-.+-.|....        ...+...-......-..
T Consensus       740 tiG~MD~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAie  812 (1416)
T KOG3617|consen  740 TIGSMDAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIE  812 (1416)
T ss_pred             EeccHHHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHH
Confidence            4578888877666543       45689999999999999988876655543211        00011222334444567


Q ss_pred             CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHH
Q 045674          195 LGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEK  274 (650)
Q Consensus       195 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  274 (650)
                      .|..++|..+|++....         ..|=..|...|.+++|.++-+.--...   -..||......+-..++.+.|++.
T Consensus       813 LgMlEeA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~Aley  880 (1416)
T KOG3617|consen  813 LGMLEEALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEAALEY  880 (1416)
T ss_pred             HhhHHHHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHHHHHH
Confidence            89999999999998763         333455677899999988877543221   235666667777777888888888


Q ss_pred             HHHHHh----------CCC---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          275 FRAMEA----------RNV---------QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV  335 (650)
Q Consensus       275 ~~~~~~----------~~~---------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  335 (650)
                      |++...          .++         ..|...|.--...+-..|+.+.|+.+|.....         |.+++++.|-.
T Consensus       881 yEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~q  951 (1416)
T KOG3617|consen  881 YEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQ  951 (1416)
T ss_pred             HHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeec
Confidence            876421          110         11223333333344455666666666655432         45666677777


Q ss_pred             CChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH----------CCCCCCHHhHH---------
Q 045674          336 GKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY----------EGVEPDEVTYG---------  396 (650)
Q Consensus       336 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----------~~~~p~~~~~~---------  396 (650)
                      |+.++|-++-++--      |......|.+.|...|++.+|..+|.+...          .++.  ...++         
T Consensus       952 Gk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAqafsnAIRlcKEnd~~--d~L~nlal~s~~~d 1023 (1416)
T KOG3617|consen  952 GKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQAFSNAIRLCKENDMK--DRLANLALMSGGSD 1023 (1416)
T ss_pred             cCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHhcCHH--HHHHHHHhhcCchh
Confidence            88888777655432      556677789999999999999988876532          1111  11111         


Q ss_pred             ----------------HHHHHHHhcCCHHHHHHHHH--------HHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          397 ----------------VIISGLCKNERLEEAMQYFE--------FCRAN--GVAVNAMFYSSLIDGLGKAGRVDEAEELF  450 (650)
Q Consensus       397 ----------------~l~~~~~~~g~~~~a~~~~~--------~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  450 (650)
                                      ..+..|-+.|.+.+|+++--        +++..  ....|....+.-...++...++++|..++
T Consensus      1024 ~v~aArYyEe~g~~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL 1103 (1416)
T KOG3617|consen 1024 LVSAARYYEELGGYAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLL 1103 (1416)
T ss_pred             HHHHHHHHHHcchhhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHH
Confidence                            11223555666666655421        11222  23335555555666666666666666555


Q ss_pred             HHHHH----------cCC----------------CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHH----------H
Q 045674          451 EEMVE----------KGC----------------PRD----SYCYNVLIDALAKCGKLDEALALFKRME----------D  490 (650)
Q Consensus       451 ~~~~~----------~~~----------------~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~  490 (650)
                      -...+          +++                .|+    ..++..++..+.++|.+..|-+-|.+.-          +
T Consensus      1104 ~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdKl~AMraLLK 1183 (1416)
T KOG3617|consen 1104 CLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDKLSAMRALLK 1183 (1416)
T ss_pred             HHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhHHHHHHHHHh
Confidence            33221          111                111    1345667777888888877766665432          2


Q ss_pred             cCCC----------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH---------------hc
Q 045674          491 EGCD----------QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC---------------LS  545 (650)
Q Consensus       491 ~~~~----------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~---------------~~  545 (650)
                      .|-.          .....| ++..-|...-+|..--++++.+...  -.....+..|+..|.               ..
T Consensus      1184 SGdt~KI~FFAn~sRqkEiY-ImAANyLQtlDWq~~pq~mK~I~tF--YTKgqafd~LanFY~~cAqiEiee~q~ydKa~ 1260 (1416)
T KOG3617|consen 1184 SGDTQKIRFFANTSRQKEIY-IMAANYLQTLDWQDNPQTMKDIETF--YTKGQAFDHLANFYKSCAQIEIEELQTYDKAM 1260 (1416)
T ss_pred             cCCcceEEEEeeccccceee-eehhhhhhhcccccChHHHhhhHhh--hhcchhHHHHHHHHHHHHHhhHHHHhhhhHHh
Confidence            2110          000011 1111122222222222222222110  001112223332221               12


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH-----------HcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHH
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLC-----------KTGRIKEACKLADGIVDREREIP----GKIRTALINA  610 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~-----------~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~  610 (650)
                      |-.++|.+.+.++..++. ....++.|-.-+.           ...+..+.++-.+.+++...-++    ..++..++..
T Consensus      1261 gAl~eA~kCl~ka~~k~~-~~t~l~~Lq~~~a~vk~~l~~~q~~~eD~~~~i~qc~~lleep~ld~~Ir~~~~~a~lie~ 1339 (1416)
T KOG3617|consen 1261 GALEEAAKCLLKAEQKNM-STTGLDALQEDLAKVKVQLRKLQIMKEDAADGIRQCTTLLEEPILDDIIRCTRLFALLIED 1339 (1416)
T ss_pred             HHHHHHHHHHHHHHhhcc-hHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhCcCCCCcchhHHHHHHHHHH
Confidence            334455555555554432 2222332222111           12245555666666665533332    4577889999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCC
Q 045674          611 LRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       611 ~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +....+|..|...++++..+.+.
T Consensus      1340 ~v~~k~y~~AyRal~el~~k~p~ 1362 (1416)
T KOG3617|consen 1340 HVSRKNYKPAYRALTELQKKVPN 1362 (1416)
T ss_pred             HHhhhhccHHHHHHHHHhhcCCc
Confidence            99999999999999999988665

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.28  E-value=1e-06  Score=90.43  Aligned_cols=478  Identities=14%  Similarity=0.147  Sum_probs=275.3

Q ss_pred             CCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045674           91 SSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVF  170 (650)
Q Consensus        91 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  170 (650)
                      +.++..-++.|.+.......|-++..++..    ...+...+-+-...+ +.++-     .-+..-.-+.+++.-...++
T Consensus       792 rnn~~kyIE~yVQkvNps~~p~VvG~LLD~----dC~E~~ik~Li~~v~-gq~~~-----deLv~EvEkRNRLklLlp~L  861 (1666)
T KOG0985|consen  792 RNNLQKYIEIYVQKVNPSRTPQVVGALLDV----DCSEDFIKNLILSVR-GQFPV-----DELVEEVEKRNRLKLLLPWL  861 (1666)
T ss_pred             HhhHHHHHHHHHhhcCCcccchhhhhhhcC----CCcHHHHHHHHHHHh-ccCCh-----HHHHHHHHhhhhHHHHHHHH
Confidence            445566677777665555556555555533    334444443332222 11222     23555666777888888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcCCCH-HHHHH---HHH-----HHH-HC-----------C--------CCCCHHHHH
Q 045674          171 NELKEKGFLMTVSAANSLIKSFGGLGMV-EELLW---VWR-----SMK-EN-----------G--------IEPSLYTYN  221 (650)
Q Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~---~~~-----~~~-~~-----------~--------~~~~~~~~~  221 (650)
                      +..+..| ..+..++|+|...|...++- +.-++   .|+     +.. ++           |        +......|.
T Consensus       862 E~~i~eG-~~d~a~hnAlaKIyIDSNNnPE~fLkeN~yYDs~vVGkYCEKRDP~lA~vaYerGqcD~elI~vcNeNSlfK  940 (1666)
T KOG0985|consen  862 ESLIQEG-SQDPATHNALAKIYIDSNNNPERFLKENPYYDSKVVGKYCEKRDPHLACVAYERGQCDLELINVCNENSLFK  940 (1666)
T ss_pred             HHHHhcc-CcchHHHhhhhheeecCCCChHHhcccCCcchhhHHhhhhcccCCceEEEeecccCCcHHHHHhcCchhHHH
Confidence            8888877 55788888888887665432 22110   111     111 11           1        111223445


Q ss_pred             HHHHHHHhcCChhH-----------HHHHHHHHhcCCCC--CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCC--CCC
Q 045674          222 FLMNGLVNSMFIES-----------SELVFKVMENGKVG--PDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNV--QPD  286 (650)
Q Consensus       222 ~ll~~~~~~~~~~~-----------A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~  286 (650)
                      ...+.+++..+.+-           -.++.++....+++  .|+.....-++++...+-..+-+++++++.-.+.  .-+
T Consensus       941 ~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~ 1020 (1666)
T KOG0985|consen  941 SQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEN 1020 (1666)
T ss_pred             HHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccc
Confidence            55555666555432           23444555543332  3556667778889999999999999998874321  112


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHHHHHHHHHHHHhcCChHHHHH
Q 045674          287 KITYMTLIQACYLEGDFDSCLSLYHEMDEKGI-----------------------EIPSHAYNLVIGGLCKVGKCIEGHA  343 (650)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----------------------~~~~~~~~~l~~~~~~~g~~~~a~~  343 (650)
                      ...-+.|+-...+ .+...+.+..+++...+.                       ..+......|+.   ..+.++.|.+
T Consensus      1021 ~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie---~i~~ldRA~e 1096 (1666)
T KOG0985|consen 1021 RNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIE---NIGSLDRAYE 1096 (1666)
T ss_pred             hhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHH---HhhhHHHHHH
Confidence            2223333333222 233444444444433211                       112222222222   1233333333


Q ss_pred             HHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          344 IFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV  423 (650)
Q Consensus       344 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  423 (650)
                      +-++..      ....|..++.+-.+.|...+|++-|-+.-      |...|.-+++...+.|.|++-.+++...++..-
T Consensus      1097 fAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1097 FAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred             HHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence            332221      45678888888888888888887775543      667788888888888888888888877776654


Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          424 AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTIL  503 (650)
Q Consensus       424 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  503 (650)
                      .|...  ..|+-+|.+.+++.+-.+.+    .   .|+.......+.-|...|.++.|.-+|.         ++..|..|
T Consensus      1165 E~~id--~eLi~AyAkt~rl~elE~fi----~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFI----A---GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKL 1226 (1666)
T ss_pred             Cccch--HHHHHHHHHhchHHHHHHHh----c---CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHH
Confidence            44433  45777888888877655443    1   3677777777777777888887776665         33446777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRI  582 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  582 (650)
                      ...+...|++..|...-+++.      +..+|..+..+|...+.+.-|.     +...+.. ..+-+..++..|...|-+
T Consensus      1227 a~TLV~LgeyQ~AVD~aRKAn------s~ktWK~VcfaCvd~~EFrlAQ-----iCGL~iivhadeLeeli~~Yq~rGyF 1295 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKAN------STKTWKEVCFACVDKEEFRLAQ-----ICGLNIIVHADELEELIEYYQDRGYF 1295 (1666)
T ss_pred             HHHHHHHHHHHHHHHHhhhcc------chhHHHHHHHHHhchhhhhHHH-----hcCceEEEehHhHHHHHHHHHhcCcH
Confidence            777778888877776655432      5567777776766655543332     2222222 556667777778888888


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      +|-+.+++..+... ......+.-|+-.|.+- +.++-++.++-
T Consensus      1296 eElIsl~Ea~LGLE-RAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1296 EELISLLEAGLGLE-RAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred             HHHHHHHHhhhchh-HHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence            88888888776543 33445555555544433 44444444443

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=2.7e-09  Score=102.74  Aligned_cols=256  Identities=13%  Similarity=0.043  Sum_probs=169.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 045674          364 IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV  443 (650)
Q Consensus       364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  443 (650)
                      +.-+.+.|++.+|.-.|+..++.... +...|..|.......++-..|+..++++.+.++. +......|.-.|...|.-
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q  369 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQ  369 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhH
Confidence            33455667777777777766655211 4556666766667777777777777777776655 666666677777777777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHH----H-H--HHHHHcCCHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          444 DEAEELFEEMVEKGCPRDSYCYNV----L-I--DALAKCGKLDEALALFKRM-EDEGCDQTVYTYTILINGMFKEHRNEE  515 (650)
Q Consensus       444 ~~A~~~~~~~~~~~~~~~~~~~~~----l-~--~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~  515 (650)
                      .+|+..++..+.... +-...-..    . .  ..+.....+....++|-++ ...+..+|......|+-.|.-.|.+++
T Consensus       370 ~~Al~~L~~Wi~~~p-~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr  448 (579)
T KOG1125|consen  370 NQALKMLDKWIRNKP-KYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR  448 (579)
T ss_pred             HHHHHHHHHHHHhCc-cchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence            777777777665421 10000000    0 0  0011111223344444444 344434677778888888888889999


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          516 ALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       516 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      |..+|+.++...+. |...|+.|+-.+....+.++|+..|+++++..|.-..+...|+-.|...|.|++|.+.|-.++..
T Consensus       449 aiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~m  527 (579)
T KOG1125|consen  449 AVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSM  527 (579)
T ss_pred             HHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHh
Confidence            99999888876544 67788888888888888899999999998888887888888888889999999998888777654


Q ss_pred             CCC---------CCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          596 ERE---------IPGKIRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       596 ~~~---------~~~~~~~~l~~~~~~~g~~~~A~~~  623 (650)
                      ...         ++..+|..|-.++...++.|.+.+.
T Consensus       528 q~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  528 QRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             hhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            211         1245787777777777777755443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.22  E-value=3.8e-07  Score=90.34  Aligned_cols=215  Identities=18%  Similarity=0.192  Sum_probs=111.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA  446 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  446 (650)
                      +...|+++.|+..|-+..         .....+.+......|.+|+.+++.+.....  ....|..+..-|...|+++.|
T Consensus       716 l~~~~q~daainhfiea~---------~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~a  784 (1636)
T KOG3616|consen  716 LEQIGQLDAAINHFIEAN---------CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIA  784 (1636)
T ss_pred             HHHHHhHHHHHHHHHHhh---------hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHH
Confidence            344455555555544332         112233444556667777777766655432  233455566667777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      .++|-+.-         .++.-+.+|.+.|+|++|.++-++...  +......|..-..-+-..|++.+|.+++-.+.  
T Consensus       785 e~lf~e~~---------~~~dai~my~k~~kw~da~kla~e~~~--~e~t~~~yiakaedldehgkf~eaeqlyiti~--  851 (1636)
T KOG3616|consen  785 EELFTEAD---------LFKDAIDMYGKAGKWEDAFKLAEECHG--PEATISLYIAKAEDLDEHGKFAEAEQLYITIG--  851 (1636)
T ss_pred             HHHHHhcc---------hhHHHHHHHhccccHHHHHHHHHHhcC--chhHHHHHHHhHHhHHhhcchhhhhheeEEcc--
Confidence            76664432         234456667777777777666554432  23344445444455556666666666553321  


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          527 GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA  606 (650)
Q Consensus       527 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  606 (650)
                        .|+.     .+..|-+.|..++.+++.++-..  -.-.++..+++.-|...|+.++|...|-++-+         |..
T Consensus       852 --~p~~-----aiqmydk~~~~ddmirlv~k~h~--d~l~dt~~~f~~e~e~~g~lkaae~~flea~d---------~ka  913 (1636)
T KOG3616|consen  852 --EPDK-----AIQMYDKHGLDDDMIRLVEKHHG--DHLHDTHKHFAKELEAEGDLKAAEEHFLEAGD---------FKA  913 (1636)
T ss_pred             --CchH-----HHHHHHhhCcchHHHHHHHHhCh--hhhhHHHHHHHHHHHhccChhHHHHHHHhhhh---------HHH
Confidence              2332     23455666666666555544321  11334445555666666666666655544321         334


Q ss_pred             HHHHHHhcCCHHHHHHH
Q 045674          607 LINALRKAGNADLAIKL  623 (650)
Q Consensus       607 l~~~~~~~g~~~~A~~~  623 (650)
                      ..+.|...+-|++|..+
T Consensus       914 avnmyk~s~lw~dayri  930 (1636)
T KOG3616|consen  914 AVNMYKASELWEDAYRI  930 (1636)
T ss_pred             HHHHhhhhhhHHHHHHH
Confidence            44444445555544443

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=99.22  E-value=8.3e-08  Score=96.00  Aligned_cols=230  Identities=14%  Similarity=0.123  Sum_probs=143.1

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC-C--------CCCCHHHHHHHHH
Q 045674          155 DCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKEN-G--------IEPSLYTYNFLMN  225 (650)
Q Consensus       155 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~--------~~~~~~~~~~ll~  225 (650)
                      ..|..-|+.|.|.+-..-+.      +..+|..|...+.+..+.+-|.-.+..|... |        -.++ .+-.....
T Consensus       736 SfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~-e~eakvAv  808 (1416)
T KOG3617|consen  736 SFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE-EDEAKVAV  808 (1416)
T ss_pred             eEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc-chhhHHHH
Confidence            34677899999998887776      4568999999999998888887666655431 1        1111 22222333


Q ss_pred             HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS  305 (650)
Q Consensus       226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (650)
                      .....|.+++|+.++++...         |..|=+.|...|.+++|+++-+.--...   =..||.....-+-..++.+.
T Consensus       809 LAieLgMlEeA~~lYr~ckR---------~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~  876 (1416)
T KOG3617|consen  809 LAIELGMLEEALILYRQCKR---------YDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA  876 (1416)
T ss_pred             HHHHHhhHHHHHHHHHHHHH---------HHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence            35678999999999998763         3455577888999999999876533221   23577777777778888888


Q ss_pred             HHHHHHHHHHCC-------------------CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674          306 CLSLYHEMDEKG-------------------IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS  366 (650)
Q Consensus       306 a~~~~~~~~~~~-------------------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (650)
                      |++.|++.....                   -..|...|..+...+-..|+.+.|+.++....+         |..+++.
T Consensus       877 AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI  947 (1416)
T KOG3617|consen  877 ALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRI  947 (1416)
T ss_pred             HHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheee
Confidence            888887532110                   011233344444444455555555555554432         3345555


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFC  418 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  418 (650)
                      .|-.|+.++|-.+-++-.      |......+.+.|-..|++.+|..+|.++
T Consensus       948 ~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrA  993 (1416)
T KOG3617|consen  948 KCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRA  993 (1416)
T ss_pred             EeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            555566666555444322      4445555666666666666666666544

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=99.21  E-value=1.7e-07  Score=92.96  Aligned_cols=197  Identities=13%  Similarity=0.032  Sum_probs=91.4

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHH
Q 045674          397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-PRDS--YCYNVLIDALA  473 (650)
Q Consensus       397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~--~~~~~l~~~~~  473 (650)
                      .+...+...|++++|...+++..+..+. +...+..+..++...|++++|...+++...... .++.  ..|..+...+.
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~  197 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL  197 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence            3344455555555555555555555433 344455555555566666666666555554321 0111  22334555566


Q ss_pred             HcCCHHHHHHHHHHHHHcCC-CCCHHHH-H--HHHHHHHhcCCHHHHHHHHHHHHH---CC-C-CCCHHHHHHHHHHHHh
Q 045674          474 KCGKLDEALALFKRMEDEGC-DQTVYTY-T--ILINGMFKEHRNEEALKLWDMMID---KG-I-TPTAASFRALSIGLCL  544 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~-~~~~~~~-~--~l~~~~~~~~~~~~A~~~~~~~~~---~~-~-~p~~~~~~~l~~~~~~  544 (650)
                      ..|++++|..+++++..... .+..... +  .++..+...|....+.+. +.+..   .. . ..........+.++..
T Consensus       198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  276 (355)
T cd05804         198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAG  276 (355)
T ss_pred             HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhc
Confidence            66666666666666543221 1111111 1  111122222321111111 11110   00 0 0011111234555666


Q ss_pred             cCCHHHHHHHHHHHhhCC-------CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          545 SGKVARACKILDELAPKG-------II--PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~-------~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .|+.++|...++.+....       ..  ...+....+.++...|++++|.+.+..++..
T Consensus       277 ~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         277 AGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             CCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            777777777776665321       11  2233344555666778888888777777654

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>PRK04841 transcriptional regulator MalT; Provisional

Probab=99.18  E-value=2.9e-07  Score=103.63  Aligned_cols=336  Identities=13%  Similarity=0.044  Sum_probs=218.0

Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CC--HHHHHHHHHHH
Q 045674          261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE------IP--SHAYNLVIGGL  332 (650)
Q Consensus       261 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------~~--~~~~~~l~~~~  332 (650)
                      .+...|+++.+...++.+.......+..........+...|+++++...+......-..      +.  ......+...+
T Consensus       383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~  462 (903)
T PRK04841        383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVA  462 (903)
T ss_pred             HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHH
Confidence            34456777777777665522111112223344555667889999999999877543111      11  12223344566


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHhHHHHHHHHH
Q 045674          333 CKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMKYEGV---EPD--EVTYGVIISGLC  403 (650)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~~~~l~~~~~  403 (650)
                      ...|++++|...++...+.-...+    ....+.+...+...|++++|...+.+.....-   .+.  ..++..+...+.
T Consensus       463 ~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~  542 (903)
T PRK04841        463 INDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILF  542 (903)
T ss_pred             HhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHH
Confidence            789999999999999876411112    12445667778889999999999988764211   111  234455666788


Q ss_pred             hcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC--CHHHHHHHHHHH
Q 045674          404 KNERLEEAMQYFEFCRAN----GVA--V-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--CPR--DSYCYNVLIDAL  472 (650)
Q Consensus       404 ~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~--~~~~~~~l~~~~  472 (650)
                      ..|++++|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+
T Consensus       543 ~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~  622 (903)
T PRK04841        543 AQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKIS  622 (903)
T ss_pred             HCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHH
Confidence            899999999998776542    211  1 22344556677788899999999998876631  111  234455567788


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCC-HHHH-----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQT-VYTY-----TILINGMFKEHRNEEALKLWDMMIDKGITPT---AASFRALSIGLC  543 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~-~~~~-----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~  543 (650)
                      ...|++++|...++++........ ...+     ...+..+...|+.+.|...+...........   ...+..++.++.
T Consensus       623 ~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~  702 (903)
T PRK04841        623 LARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQI  702 (903)
T ss_pred             HHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHH
Confidence            899999999999988854311111 1111     1122344568899999998877654221111   112456777888


Q ss_pred             hcCCHHHHHHHHHHHhhC----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          544 LSGKVARACKILDELAPK----GII--PETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ..|++++|...++++...    +..  ...+...++.++...|+.++|.+.+.++++..
T Consensus       703 ~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la  761 (903)
T PRK04841        703 LLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA  761 (903)
T ss_pred             HcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence            999999999999998753    222  33567778899999999999999999999875

>PLN02789 farnesyltranstransferase

Probab=99.17  E-value=7.8e-08  Score=91.12  Aligned_cols=224  Identities=13%  Similarity=0.052  Sum_probs=151.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674          364 IDSYAKLGSMNEAINIFERMKYEGVEPD-EVTYGVIISGLCKNE-RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG  441 (650)
Q Consensus       364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  441 (650)
                      -..+...+..++|+.++.++++.  .|+ ..+|+....++...| ++++++..++.+.+.+++ +..+|+....++.+.|
T Consensus        44 ra~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~  120 (320)
T PLN02789         44 RAVYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLG  120 (320)
T ss_pred             HHHHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcC
Confidence            33344456677777777777765  333 334554444555555 567788888777777665 5556665555555555


Q ss_pred             CH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---CCH---
Q 045674          442 RV--DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE---HRN---  513 (650)
Q Consensus       442 ~~--~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---~~~---  513 (650)
                      +.  ++++.+++.+++.+ +.+..+|+....++.+.|+++++++.++++++.++. |...|+....++.+.   |+.   
T Consensus       121 ~~~~~~el~~~~kal~~d-pkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~  198 (320)
T PLN02789        121 PDAANKELEFTRKILSLD-AKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAM  198 (320)
T ss_pred             chhhHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccccc
Confidence            52  56777777777765 667778888888888888888888888888887655 666677666555443   222   


Q ss_pred             -HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC--------
Q 045674          514 -EEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCKTG--------  580 (650)
Q Consensus       514 -~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------  580 (650)
                       ++.+.+..+++...+. |...|+.+...+..    .++..+|.+++.++...++.+..++..|+.+|+...        
T Consensus       199 ~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~  277 (320)
T PLN02789        199 RDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRD  277 (320)
T ss_pred             HHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhh
Confidence             4667777777776554 66777777777766    245567888888888777778888888888887632        


Q ss_pred             ----------CHHHHHHHHHHHH
Q 045674          581 ----------RIKEACKLADGIV  593 (650)
Q Consensus       581 ----------~~~~A~~~~~~~~  593 (650)
                                ..++|.++++.+.
T Consensus       278 ~~~~~~~~~~~~~~a~~~~~~l~  300 (320)
T PLN02789        278 TVDTLAEELSDSTLAQAVCSELE  300 (320)
T ss_pred             hhhccccccccHHHHHHHHHHHH
Confidence                      2366777777774

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.16  E-value=7.3e-09  Score=91.35  Aligned_cols=120  Identities=13%  Similarity=0.092  Sum_probs=67.9

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCC--HHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL-CLSGK--VARA  551 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~-~~~g~--~~~A  551 (650)
                      .++.+++...+++..+.++. +...|..++..|...|++++|...++++.+..+. +...+..++.++ ...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            44455555555555554433 5555666666666666666666666666555433 455555555543 34444  3566


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .++++++.+.+|.+..++..++..+...|++++|+..|+++++..
T Consensus       130 ~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~  174 (198)
T PRK10370        130 REMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDLN  174 (198)
T ss_pred             HHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            666666666655555666666666666666666666666665554

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.14  E-value=1.8e-09  Score=100.83  Aligned_cols=252  Identities=16%  Similarity=0.161  Sum_probs=159.0

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674          330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE  409 (650)
Q Consensus       330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  409 (650)
                      +-+.-.|++..++.-.+ ........+......+.+++...|+++.++   .++.... .|.......+...+...++-+
T Consensus         9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e   83 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE   83 (290)
T ss_dssp             HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred             HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence            44556788888876555 222222223445556778888888877554   3333332 556555555554443334555


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          410 EAMQYFEFCRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      .++.-++......... +.........++...|++++|++++...      .+.......+.+|.+.++++.|.+.++.|
T Consensus        84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~  157 (290)
T PF04733_consen   84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM  157 (290)
T ss_dssp             CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5555555443333222 2333333345566778888888877542      46677777888888899999999999888


Q ss_pred             HHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          489 EDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       489 ~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      .+.  ..| .+...+..++..    .+.+.+|.-+|+++.+. ..++..+++.++.++...|++++|.++++++.+.++.
T Consensus       158 ~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~  233 (290)
T PF04733_consen  158 QQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN  233 (290)
T ss_dssp             HCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred             Hhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence            775  223 334445554432    33688889999887654 5567888888888888899999999999888888888


Q ss_pred             cHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcC
Q 045674          565 PETAFEDMITCLCKTGRI-KEACKLADGIVDRE  596 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~~~  596 (650)
                      +++++.+++.+....|+. +.+.+++.++....
T Consensus       234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~~  266 (290)
T PF04733_consen  234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQSN  266 (290)
T ss_dssp             HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHHT
T ss_pred             CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHhC
Confidence            888888888888888887 66777888777653

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF13041 PPR_2: PPR repeat family

Probab=99.14  E-value=1.3e-10  Score=76.55  Aligned_cols=49  Identities=51%  Similarity=0.935  Sum_probs=32.4

Q ss_pred             CChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHH
Q 045674          250 PDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACY  298 (650)
Q Consensus       250 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  298 (650)
                      ||+.+||++|++|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            5666666666666666666666666666666666666666666666654

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.11  E-value=3.4e-09  Score=88.39  Aligned_cols=109  Identities=10%  Similarity=-0.064  Sum_probs=60.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT  579 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  579 (650)
                      +..++..+...|++++|...|+.++...+. +...+..++.++...|++++|...|+++...+|.+...+..++.++...
T Consensus        27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~  105 (144)
T PRK15359         27 VYASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMM  105 (144)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHc
Confidence            334455555556666666666555554333 4555555555555566666666666666655555555555566666666


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          580 GRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       580 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      |++++|+..|+++++.. +.+...+...+.+
T Consensus       106 g~~~eAi~~~~~Al~~~-p~~~~~~~~~~~~  135 (144)
T PRK15359        106 GEPGLAREAFQTAIKMS-YADASWSEIRQNA  135 (144)
T ss_pred             CCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            66666666666655554 4444444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=99.11  E-value=2.2e-08  Score=92.59  Aligned_cols=188  Identities=17%  Similarity=0.052  Sum_probs=124.0

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV--YTY  500 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~  500 (650)
                      ....+..++..+...|++++|...++++.... +.+.   ..+..++.+|.+.|++++|+..++++.+..+....  .++
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRY-PFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence            55666777777888888888888888887753 3332   45677778888888888888888888776443121  244


Q ss_pred             HHHHHHHHhc--------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674          501 TILINGMFKE--------HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDM  572 (650)
Q Consensus       501 ~~l~~~~~~~--------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l  572 (650)
                      ..++.++...        |++++|.+.++++.+..+. +......+.....    ....             .......+
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~-------------~~~~~~~~  172 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNR-------------LAGKELYV  172 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHH-------------HHHHHHHH
Confidence            5555555543        6677777777777765333 2222211111100    0000             01112357


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          573 ITCLCKTGRIKEACKLADGIVDRER--EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       573 ~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      +..+...|++++|+..++++++...  +.....+..++.++.+.|++++|...++.+....+
T Consensus       173 a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~  234 (235)
T TIGR03302       173 ARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP  234 (235)
T ss_pred             HHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence            7788999999999999999987631  22357888999999999999999999888876543

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=99.10  E-value=6.4e-09  Score=97.16  Aligned_cols=151  Identities=21%  Similarity=0.197  Sum_probs=72.1

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCC
Q 045674          402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGK  477 (650)
Q Consensus       402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~  477 (650)
                      +...|++++|++++...      .+.......+.+|.+.++++.|.+.++.|.+.+  .|. +...++.++..    .++
T Consensus       112 ~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD~-~l~qLa~awv~l~~g~e~  182 (290)
T PF04733_consen  112 LFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNMQQID--EDS-ILTQLAEAWVNLATGGEK  182 (290)
T ss_dssp             HCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CCH-HHHHHHHHHHHHHHTTTC
T ss_pred             HHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcH-HHHHHHHHHHHHHhCchh
Confidence            44455555555555421      144444455555556666666666665555432  222 22223222221    224


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHHHHHH
Q 045674          478 LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV-ARACKILD  556 (650)
Q Consensus       478 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~A~~~~~  556 (650)
                      +.+|..+|+++.+. +.++..+++.++.++...|++++|.+++.++.+.+.. +..++..++.+....|+. +.+.+++.
T Consensus       183 ~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~  260 (290)
T PF04733_consen  183 YQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLS  260 (290)
T ss_dssp             CCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHH
Confidence            55566666665443 3345555555555555566666666665555544333 444555555555555554 44555555


Q ss_pred             HHhhCCC
Q 045674          557 ELAPKGI  563 (650)
Q Consensus       557 ~~~~~~~  563 (650)
                      ++....|
T Consensus       261 qL~~~~p  267 (290)
T PF04733_consen  261 QLKQSNP  267 (290)
T ss_dssp             HCHHHTT
T ss_pred             HHHHhCC
Confidence            5554433

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=99.10  E-value=1.3e-06  Score=86.76  Aligned_cols=83  Identities=11%  Similarity=0.085  Sum_probs=44.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNS  230 (650)
Q Consensus       151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  230 (650)
                      .+....+...|+-+.|-++-    ..    +- --.+.|..|.+.|.+-.|......=..  +..|......+..++++.
T Consensus       593 ~sy~q~l~dt~qd~ka~elk----~s----dg-d~laaiqlyika~~p~~a~~~a~n~~~--l~~de~il~~ia~alik~  661 (1636)
T KOG3616|consen  593 RSYLQALMDTGQDEKAAELK----ES----DG-DGLAAIQLYIKAGKPAKAARAALNDEE--LLADEEILEHIAAALIKG  661 (1636)
T ss_pred             HHHHHHHHhcCchhhhhhhc----cc----cC-ccHHHHHHHHHcCCchHHHHhhcCHHH--hhccHHHHHHHHHHHHhh
Confidence            34555666667666665432    11    00 113456677777777666554321111  223555555556666666


Q ss_pred             CChhHHHHHHHHHh
Q 045674          231 MFIESSELVFKVME  244 (650)
Q Consensus       231 ~~~~~A~~~~~~~~  244 (650)
                      .-++.|-.+|+++.
T Consensus       662 elydkagdlfeki~  675 (1636)
T KOG3616|consen  662 ELYDKAGDLFEKIH  675 (1636)
T ss_pred             HHHHhhhhHHHHhh
Confidence            66666666666655

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=99.09  E-value=9.9e-09  Score=85.57  Aligned_cols=119  Identities=13%  Similarity=0.042  Sum_probs=96.2

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER  597 (650)
Q Consensus       518 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  597 (650)
                      .++++.++.  .|+  .+...+..+...|++++|...|+.++...|.+...+..++.++...|++++|+..|+++++.+ 
T Consensus        14 ~~~~~al~~--~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-   88 (144)
T PRK15359         14 DILKQLLSV--DPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-   88 (144)
T ss_pred             HHHHHHHHc--CHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-
Confidence            456666654  333  355677888889999999999999998888888999999999999999999999999999886 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhh
Q 045674          598 EIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRR  641 (650)
Q Consensus       598 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  641 (650)
                      +.+..++..++.++...|++++|+..++++++..+........+
T Consensus        89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p~~~~~~~~~  132 (144)
T PRK15359         89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSYADASWSEIR  132 (144)
T ss_pred             CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence            77888888899999999999999999999998887754444433

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.08  E-value=9.9e-09  Score=101.55  Aligned_cols=217  Identities=17%  Similarity=0.103  Sum_probs=183.6

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA  473 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (650)
                      .-..+...+...|-...|..+|+++.         .|...+.+|+..|+..+|..+..+-+++  +||+..|..+++...
T Consensus       400 ~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGDv~~  468 (777)
T KOG1128|consen  400 LQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGDVLH  468 (777)
T ss_pred             HHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhhhcc
Confidence            33556677888999999999998654         4667888999999999999999998885  799999999999888


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      ...-+++|.++.+.....       +-..+.......++++++.+.|+.-.+.++- ...+|..++.+..+.++++.|.+
T Consensus       469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~  540 (777)
T KOG1128|consen  469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVK  540 (777)
T ss_pred             ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHH
Confidence            777888998888766442       1122223334579999999999998886544 67889999999999999999999


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .|...+...|.+.+.|+++..+|.+.|+-.+|...++++++.+ ..+-.+|....-...+.|.+++|++.++++++.
T Consensus       541 aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  541 AFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999988 667778888888889999999999999998875

>PF13041 PPR_2: PPR repeat family

Probab=99.08  E-value=4.2e-10  Score=74.16  Aligned_cols=49  Identities=45%  Similarity=0.970  Sum_probs=29.5

Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 045674          355 PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLC  403 (650)
Q Consensus       355 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  403 (650)
                      ||+.+|+.++.+|++.|++++|.++|++|.+.|+.||..||+.++.+|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            4555666666666666666666666666666666666666666665554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.08  E-value=1.3e-05  Score=82.77  Aligned_cols=202  Identities=14%  Similarity=0.119  Sum_probs=92.0

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          253 VTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGL  332 (650)
Q Consensus       253 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  332 (650)
                      ..|..+..+-.+.|...+|++-|-+.      .|...|..++....+.|.|++-.+.+...++...+|..  =..|+-+|
T Consensus      1105 ~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~i--d~eLi~Ay 1176 (1666)
T KOG0985|consen 1105 AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYI--DSELIFAY 1176 (1666)
T ss_pred             HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccc--hHHHHHHH
Confidence            34555555555555555554444332      13344555555555555555555554444443332222  23344445


Q ss_pred             HhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 045674          333 CKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAM  412 (650)
Q Consensus       333 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~  412 (650)
                      .+.+++.+.++++       .-||.........-|...|.++.|.-+|..+         .-|..+...+...|+++.|.
T Consensus      1177 Akt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~v---------SN~a~La~TLV~LgeyQ~AV 1240 (1666)
T KOG0985|consen 1177 AKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNV---------SNFAKLASTLVYLGEYQGAV 1240 (1666)
T ss_pred             HHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHh---------hhHHHHHHHHHHHHHHHHHH
Confidence            5555544433332       1234444444445555555555554444322         23444444455555555544


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          413 QYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME  489 (650)
Q Consensus       413 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  489 (650)
                      +.-+++      .+..+|...-.+|...+.+.-|     +|...++.....-...++..|...|-+++.+.+++..+
T Consensus      1241 D~aRKA------ns~ktWK~VcfaCvd~~EFrlA-----QiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~L 1306 (1666)
T KOG0985|consen 1241 DAARKA------NSTKTWKEVCFACVDKEEFRLA-----QICGLNIIVHADELEELIEYYQDRGYFEELISLLEAGL 1306 (1666)
T ss_pred             HHhhhc------cchhHHHHHHHHHhchhhhhHH-----HhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhh
Confidence            333221      1344455444444444433322     22222222333444556666666666666666666543

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=99.06  E-value=4.7e-08  Score=86.23  Aligned_cols=125  Identities=11%  Similarity=0.065  Sum_probs=101.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HHcCC--HHHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL-CKTGR--IKEA  585 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~--~~~A  585 (650)
                      ..++.+++...++..++.++. +...|..++..|...|++++|...|+++.+..|.+..++..++.++ ...|+  .++|
T Consensus        51 ~~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         51 SQQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             CchhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHH
Confidence            366777888888888776555 7788888888888888888888888888888888888888888875 56676  4888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      .++++++++.+ +.+..++..++..+.+.|++++|+..|+++++..+..+
T Consensus       130 ~~~l~~al~~d-P~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~~~~~  178 (198)
T PRK10370        130 REMIDKALALD-ANEVTALMLLASDAFMQADYAQAIELWQKVLDLNSPRV  178 (198)
T ss_pred             HHHHHHHHHhC-CCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCc
Confidence            88888888886 66788888888888888888888888888888766644

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=99.04  E-value=7.1e-08  Score=100.78  Aligned_cols=137  Identities=15%  Similarity=0.188  Sum_probs=92.7

Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA  537 (650)
Q Consensus       458 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  537 (650)
                      ++.+...+..|+....+.|.+++|+.+++.+.+..+. +......++.++.+.+++++|+..+++.....+. +......
T Consensus        82 ~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~  159 (694)
T PRK15179         82 YPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILL  159 (694)
T ss_pred             ccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHH
Confidence            4555666777777777777777777777777665433 4555566666667777777777777777765544 5556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ++.++.+.|++++|..+|+++...++.+..++..++.++...|+.++|...|+++++..
T Consensus       160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~  218 (694)
T PRK15179        160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAI  218 (694)
T ss_pred             HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence            66677777777777777777776666666777777777777777777777777776653

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.04  E-value=8.8e-08  Score=83.64  Aligned_cols=164  Identities=14%  Similarity=0.154  Sum_probs=118.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      |... ..+...+...|+-+....+....... .+.|......++....+.|++..|+..+++.....+ +|..+|+.++.
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence            3444 55666677777777777666665443 255666666777777788888888888887777643 47778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      +|.+.|++++|..-|.+..+..+. +...++.++..+.-.|+.+.|..++..+......+..+-..++.+....|++++|
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHH
Confidence            888888888888888887776444 5566777777777788888888888888777666777778888888888888888


Q ss_pred             HHHHHHHH
Q 045674          586 CKLADGIV  593 (650)
Q Consensus       586 ~~~~~~~~  593 (650)
                      .++...-+
T Consensus       222 ~~i~~~e~  229 (257)
T COG5010         222 EDIAVQEL  229 (257)
T ss_pred             Hhhccccc
Confidence            77766554

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=99.03  E-value=8.1e-08  Score=101.61  Aligned_cols=235  Identities=13%  Similarity=0.077  Sum_probs=148.9

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRAN-GVAV---NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV  467 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  467 (650)
                      ...|...|......++.++|+++.++++.. ++.-   -...|.++++....-|.-+...++|+++.+..  ....+|..
T Consensus      1458 Si~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~~ 1535 (1710)
T KOG1070|consen 1458 SILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHLK 1535 (1710)
T ss_pred             chHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHHH
Confidence            456677777777777777777777766653 2211   12355666666666666677777777777642  33455666


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcC
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP-TAASFRALSIGLCLSG  546 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g  546 (650)
                      |...|.+.+++++|.++|+.|.+. +......|..++..+.+..+.+.|..++.++++.-+.- ........++.-++.|
T Consensus      1536 L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLEFk~G 1614 (1710)
T KOG1070|consen 1536 LLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLEFKYG 1614 (1710)
T ss_pred             HHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHHhhcC
Confidence            777777777777777777777665 22456667777777777777777777777777642221 2334445555666777


Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG--KIRTALINALRKAGNADLAIKLM  624 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~  624 (650)
                      +.+.+..+|+..+...|.-.+.|+.+++.-.++|+.+.++.+|++++.++..+..  ..|...+.--..+|+-+.+..+=
T Consensus      1615 DaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1615 DAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred             CchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHHH
Confidence            7777777777777777777777777777777777777777777777777655532  34444444444556654444444


Q ss_pred             HHHHH
Q 045674          625 HSKIG  629 (650)
Q Consensus       625 ~~~~~  629 (650)
                      .++.+
T Consensus      1695 arA~E 1699 (1710)
T KOG1070|consen 1695 ARAKE 1699 (1710)
T ss_pred             HHHHH
Confidence            44433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=99.03  E-value=7.9e-09  Score=86.12  Aligned_cols=116  Identities=14%  Similarity=0.083  Sum_probs=79.4

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          519 LWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE  598 (650)
Q Consensus       519 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  598 (650)
                      .+++++...+. +......++..+...|++++|...++.+...++.+...+..++.++...|++++|..+++++++.+ +
T Consensus         5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p   82 (135)
T TIGR02552         5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P   82 (135)
T ss_pred             hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence            34445444332 344555666667777777777777777777766677777777777777777777777777777665 5


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          599 IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       599 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      .+...+..++.++...|++++|...++++++..+....
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~  120 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE  120 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence            56667777777777777777777777777777665444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.02  E-value=1.8e-07  Score=80.92  Aligned_cols=189  Identities=16%  Similarity=0.179  Sum_probs=101.7

Q ss_pred             cCCHHHHHHHHHHHHHC---C-CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 045674          405 NERLEEAMQYFEFCRAN---G-VAVNA-MFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD  479 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~---~-~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (650)
                      ..+.++..+++..+...   + ..++. ..|..++-+....|+.+.|..+++++... +|.+..+-..-+..+...|+++
T Consensus        25 ~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~-fp~S~RV~~lkam~lEa~~~~~  103 (289)
T KOG3060|consen   25 VRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDR-FPGSKRVGKLKAMLLEATGNYK  103 (289)
T ss_pred             ccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHh-CCCChhHHHHHHHHHHHhhchh
Confidence            34556666666555432   2 22222 22334444455566666666666666554 2334443333344445556666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      +|+++++.+++.++. |..++-.-+...-..|+.-+|++-+.+..+. +..|.+.|..+...|...|++++|.-.+++++
T Consensus       104 ~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~l  181 (289)
T KOG3060|consen  104 EAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEELL  181 (289)
T ss_pred             hHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHH
Confidence            666666666655432 4445544444444555555666655555554 23366666666666666666666666666666


Q ss_pred             hCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcC
Q 045674          560 PKGIIPETAFEDMITCLCKTG---RIKEACKLADGIVDRE  596 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~  596 (650)
                      -..|.++-.+..+++.+.-.|   +..-|.++|.++++.+
T Consensus       182 l~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~  221 (289)
T KOG3060|consen  182 LIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLN  221 (289)
T ss_pred             HcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhC
Confidence            655656666666665555444   3444566666666543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.02  E-value=2.9e-05  Score=74.93  Aligned_cols=428  Identities=12%  Similarity=0.139  Sum_probs=226.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF  222 (650)
Q Consensus       143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (650)
                      .|.|..+|+.|++-+..+ ..++++..++++... ++.....|..-+..-.+..+++....+|.++...  ..+...|..
T Consensus        16 nP~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~l   91 (656)
T KOG1914|consen   16 NPYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKL   91 (656)
T ss_pred             CCccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHH
Confidence            355788888888887766 888888888888764 4667788888888888888888888888888775  335666666


Q ss_pred             HHHHHHh-cCChh----HHHHHHHHHhc-CCCCC-ChhhHHHHHHH---------HHHcCChhHHHHHHHHHHhCCCCCC
Q 045674          223 LMNGLVN-SMFIE----SSELVFKVMEN-GKVGP-DVVTYNTMIKG---------YCKVGKTQKAMEKFRAMEARNVQPD  286 (650)
Q Consensus       223 ll~~~~~-~~~~~----~A~~~~~~~~~-~~~~~-~~~~~~~l~~~---------~~~~g~~~~A~~~~~~~~~~~~~~~  286 (650)
                      .+....+ .++..    ...+.|+.... .|+.+ +...|+..+..         |..+.+.+...++|+++...-+.-=
T Consensus        92 Yl~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nl  171 (656)
T KOG1914|consen   92 YLSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNL  171 (656)
T ss_pred             HHHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccH
Confidence            6554322 22222    22333333332 23222 22234444432         2333455667777777765421100


Q ss_pred             HHHHHH------HHHHH-------HhcCCHHHHHHHHHHHHH--CCCCCCHHHHHHHHHHHHhcCChHH--HHHHHHHHH
Q 045674          287 KITYMT------LIQAC-------YLEGDFDSCLSLYHEMDE--KGIEIPSHAYNLVIGGLCKVGKCIE--GHAIFESMI  349 (650)
Q Consensus       287 ~~~~~~------l~~~~-------~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~--a~~~~~~~~  349 (650)
                      ...|+-      -|+..       -+...+..|.++++++..  .|......+       .-..|--++  ..+++...+
T Consensus       172 EkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~-------vp~~~T~~e~~qv~~W~n~I  244 (656)
T KOG1914|consen  172 EKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPA-------VPPKGTKDEIQQVELWKNWI  244 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCC-------CCCCCChHHHHHHHHHHHHH
Confidence            112211      11111       112334555555555543  121111100       000011111  111111111


Q ss_pred             H----cCCC-cCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHhH-----HHHHHHHHhcCC-------HHHH
Q 045674          350 R----RGCQ-PNVAIYTALIDSYAKLGSMNEAINIFERMK-YEGVEPDEVTY-----GVIISGLCKNER-------LEEA  411 (650)
Q Consensus       350 ~----~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~-~~~~~p~~~~~-----~~l~~~~~~~g~-------~~~a  411 (650)
                      +    .+.. .+....            -....-.+++.. -.+..|+....     ....+.+...|+       -+++
T Consensus       245 ~wEksNpL~t~~~~~~------------~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~  312 (656)
T KOG1914|consen  245 KWEKSNPLRTLDGTML------------TRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEA  312 (656)
T ss_pred             HHHhcCCcccccccHH------------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHH
Confidence            1    0000 000000            000011111111 11112211100     001111222232       3455


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          412 MQYFEFCRANGVAVNAMFYSSLIDGLGKAG---RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       412 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      ..+++.....-..-+..+|..+...--..-   ..+.....++++...-...-..+|..+++.-.+..-+..|..+|.++
T Consensus       313 ~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~ka  392 (656)
T KOG1914|consen  313 ASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKA  392 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHH
Confidence            555555544322224444444433221111   25555666666665432333456777777777777888888899888


Q ss_pred             HHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---
Q 045674          489 EDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---  564 (650)
Q Consensus       489 ~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---  564 (650)
                      .+.+..+ ++..+++++.-+| .++.+-|.++|+--++. ...+.......+.-+.+.++-..|..+|++++.....   
T Consensus       393 R~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~k  470 (656)
T KOG1914|consen  393 REDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADK  470 (656)
T ss_pred             hhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhh
Confidence            8876665 6667777777554 57888888888877754 2224455556677778888888888899988877332   


Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          565 PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ...+|..++.--..-|+...++++-++....
T Consensus       471 s~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  471 SKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             hHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            5678888888888888888888887766543

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=99.01  E-value=1.1e-07  Score=82.97  Aligned_cols=162  Identities=14%  Similarity=0.050  Sum_probs=103.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI  540 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  540 (650)
                      |..+ ..+...+...|+-+....+........+ .+......++....+.|++.+|...+.++....+ +|...++.++-
T Consensus        66 d~~i-~~~a~a~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lga  142 (257)
T COG5010          66 DLSI-AKLATALYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGA  142 (257)
T ss_pred             hHHH-HHHHHHHHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHH
Confidence            4444 5555556666666666666665444322 2555555566666677777777777777766533 36667777777


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLA  620 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  620 (650)
                      +|.+.|++++|..-|.++.+..+.++.++++++-.+.-.|+.+.|..++..+.... +.|..+...++.+....|++++|
T Consensus       143 aldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~-~ad~~v~~NLAl~~~~~g~~~~A  221 (257)
T COG5010         143 ALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSP-AADSRVRQNLALVVGLQGDFREA  221 (257)
T ss_pred             HHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCC-CCchHHHHHHHHHHhhcCChHHH
Confidence            77777777777777777777666667777777777777777777777777666554 44566666666666677777777


Q ss_pred             HHHHHH
Q 045674          621 IKLMHS  626 (650)
Q Consensus       621 ~~~~~~  626 (650)
                      ..+..+
T Consensus       222 ~~i~~~  227 (257)
T COG5010         222 EDIAVQ  227 (257)
T ss_pred             Hhhccc
Confidence            665543

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=99.01  E-value=1.1e-07  Score=94.40  Aligned_cols=236  Identities=17%  Similarity=0.119  Sum_probs=190.0

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 045674          321 PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIIS  400 (650)
Q Consensus       321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  400 (650)
                      --..-..+...+.+.|-...|..+|++..         .|...+.+|+..|+..+|..+..+-.++  +||...|..+++
T Consensus       397 ~Wq~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD  465 (777)
T KOG1128|consen  397 IWQLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD  465 (777)
T ss_pred             cchHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence            33445567888999999999999998764         4667888999999999999999888874  789999999998


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674          401 GLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDE  480 (650)
Q Consensus       401 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  480 (650)
                      ......-+++|.++.+..-..       .-..+.......++++++.+.|+.-.+.. +-...+|..++.+..+.++++.
T Consensus       466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~n-plq~~~wf~~G~~ALqlek~q~  537 (777)
T KOG1128|consen  466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEIN-PLQLGTWFGLGCAALQLEKEQA  537 (777)
T ss_pred             hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcC-ccchhHHHhccHHHHHHhhhHH
Confidence            887777789999888765332       12223333445789999999999998875 6778899999999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674          481 ALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP  560 (650)
Q Consensus       481 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  560 (650)
                      |.+.|.......+. +...||.+..+|.+.|+..+|...++++.+.+.. +...|...+....+.|.+++|.+.+.++..
T Consensus       538 av~aF~rcvtL~Pd-~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~  615 (777)
T KOG1128|consen  538 AVKAFHRCVTLEPD-NAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLD  615 (777)
T ss_pred             HHHHHHHHhhcCCC-chhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence            99999999887554 7889999999999999999999999999988744 666777777778899999999999999886


Q ss_pred             CCCC--cHHHHHHHHHHHH
Q 045674          561 KGII--PETAFEDMITCLC  577 (650)
Q Consensus       561 ~~~~--~~~~~~~l~~~~~  577 (650)
                      ....  ++.+...++....
T Consensus       616 ~~~~~~d~~vl~~iv~~~~  634 (777)
T KOG1128|consen  616 LRKKYKDDEVLLIIVRTVL  634 (777)
T ss_pred             hhhhcccchhhHHHHHHHH
Confidence            4332  5555555554443

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=99.00  E-value=3.5e-05  Score=74.36  Aligned_cols=423  Identities=13%  Similarity=0.120  Sum_probs=245.2

Q ss_pred             CCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHH
Q 045674          179 LMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTM  258 (650)
Q Consensus       179 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  258 (650)
                      |.|..+|..|++-+..+ -.+++.+.++++... ++-....|...+.......+++..+++|.+.+..  ..+...|...
T Consensus        17 P~di~sw~~lire~qt~-~~~~~R~~YEq~~~~-FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk--vLnlDLW~lY   92 (656)
T KOG1914|consen   17 PYDIDSWSQLIREAQTQ-PIDKVRETYEQLVNV-FPSSPRAWKLYIERELASKDFESVEKLFSRCLVK--VLNLDLWKLY   92 (656)
T ss_pred             CccHHHHHHHHHHHccC-CHHHHHHHHHHHhcc-CCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--HhhHhHHHHH
Confidence            78999999999988777 999999999999886 5567888999999999999999999999998865  4467777777


Q ss_pred             HHHHHHc-CChhH----HHHHHHHHH-hCCCCCC-HHHHHHHHHH---------HHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          259 IKGYCKV-GKTQK----AMEKFRAME-ARNVQPD-KITYMTLIQA---------CYLEGDFDSCLSLYHEMDEKGIEIPS  322 (650)
Q Consensus       259 ~~~~~~~-g~~~~----A~~~~~~~~-~~~~~~~-~~~~~~l~~~---------~~~~~~~~~a~~~~~~~~~~~~~~~~  322 (650)
                      +..-.+. |+...    ....|+-.. +.|..+- ...|+..+.-         +..+.+.+...++|+++...-+..-.
T Consensus        93 l~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlE  172 (656)
T KOG1914|consen   93 LSYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLE  172 (656)
T ss_pred             HHHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHH
Confidence            7544332 33332    223333332 3343322 2334444332         22334556666677766654222111


Q ss_pred             HHHHHH------HHHHH-------hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-------cCCHHH--HHHHH
Q 045674          323 HAYNLV------IGGLC-------KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK-------LGSMNE--AINIF  380 (650)
Q Consensus       323 ~~~~~l------~~~~~-------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~~--A~~~~  380 (650)
                      ..|+-.      ++...       +...+..|.++++++..            +.+++.+       .|-.++  ..+++
T Consensus       173 kLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~------------lt~GL~r~~~~vp~~~T~~e~~qv~~W  240 (656)
T KOG1914|consen  173 KLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQN------------LTRGLNRNAPAVPPKGTKDEIQQVELW  240 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHH------------HHhhhcccCCCCCCCCChHHHHHHHHH
Confidence            111111      00000       11122223333332221            1111111       111111  11111


Q ss_pred             HHHHH----CCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHH-HCCCCCCHHH----H-HHHHHHHHHcCC-------
Q 045674          381 ERMKY----EGVE-PDEVTYGVIISGLCKNERLEEAMQYFEFCR-ANGVAVNAMF----Y-SSLIDGLGKAGR-------  442 (650)
Q Consensus       381 ~~~~~----~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~----~-~~l~~~~~~~~~-------  442 (650)
                      ...++    .++. .+.....            ....-++++.. -.+..|+...    | ....+.+...|+       
T Consensus       241 ~n~I~wEksNpL~t~~~~~~~------------~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~  308 (656)
T KOG1914|consen  241 KNWIKWEKSNPLRTLDGTMLT------------RRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSL  308 (656)
T ss_pred             HHHHHHHhcCCcccccccHHH------------HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhh
Confidence            11110    1111 0000000            00011111111 1111111110    0 011112333333       


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG---KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL  519 (650)
Q Consensus       443 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  519 (650)
                      -+++..+++..+..-..-+..+|..+...-...-   +.+.....++++.......-.-+|..++....+..-...|..+
T Consensus       309 t~e~~~~yEr~I~~l~~~~~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~i  388 (656)
T KOG1914|consen  309 TDEAASIYERAIEGLLKENKLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKI  388 (656)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHH
Confidence            4566667766665422234444544444322222   2556666676666542222334577788877888889999999


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          520 WDMMIDKGITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE  598 (650)
Q Consensus       520 ~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  598 (650)
                      |.++.+.+..+ +.....+++..+| .++.+-|.++|+--+++..+++......+..+...++-..|..+|++++....+
T Consensus       389 F~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~  467 (656)
T KOG1914|consen  389 FKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLS  467 (656)
T ss_pred             HHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCC
Confidence            99999877766 5556666666554 689999999999999887788888889999999999999999999999988545


Q ss_pred             CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          599 IP--GKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       599 ~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ++  ..+|..++.--..-|+...++++-++....
T Consensus       468 ~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~a  501 (656)
T KOG1914|consen  468 ADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTA  501 (656)
T ss_pred             hhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence            43  579999999889999999999998876654

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.97  E-value=1.6e-07  Score=86.75  Aligned_cols=185  Identities=14%  Similarity=0.023  Sum_probs=138.6

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAV--NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY---CY  465 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~---~~  465 (650)
                      ....+..+...+...|++++|...|+++....+..  ....+..++.++...|++++|...++++++.. |.+..   .+
T Consensus        32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~  110 (235)
T TIGR03302        32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLH-PNHPDADYAY  110 (235)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCchHHHH
Confidence            45677788888999999999999999998876541  12466778899999999999999999999874 33332   56


Q ss_pred             HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          466 NVLIDALAKC--------GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA  537 (650)
Q Consensus       466 ~~l~~~~~~~--------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  537 (650)
                      ..++.++.+.        |++++|.+.|+++.+..+. +...+..+.....    .....              ......
T Consensus       111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~----~~~~~--------------~~~~~~  171 (235)
T TIGR03302       111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDY----LRNRL--------------AGKELY  171 (235)
T ss_pred             HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHH----HHHHH--------------HHHHHH
Confidence            7777777765        7899999999999987443 3333322221111    11100              011235


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++..+.+.|++++|...++++++..+.   ...++..++.++...|++++|..+++.+...
T Consensus       172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            667789999999999999999988664   4688999999999999999999999888754

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.97  E-value=4.4e-07  Score=94.96  Aligned_cols=145  Identities=12%  Similarity=0.100  Sum_probs=114.7

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          424 AVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTIL  503 (650)
Q Consensus       424 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  503 (650)
                      ..+...+..|..+..+.|.+++|..+++.+.+.. |.+......++.++.+.+++++|+..+++.....+. +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            3367788888888888888888888888888874 667777888888888888888888888888887655 77777788


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED  571 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  571 (650)
                      ..++...|++++|..+|+++...++. +..++..++.++...|+.++|...|+++.+..-+....|+.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~p~-~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~  227 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQHPE-FENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR  227 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence            88888888888888888888875443 57788888888888888888888888888764443344433

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.95  E-value=1e-06  Score=93.69  Aligned_cols=227  Identities=14%  Similarity=0.135  Sum_probs=171.1

Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          415 FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK-GCP---RDSYCYNVLIDALAKCGKLDEALALFKRMED  490 (650)
Q Consensus       415 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  490 (650)
                      |+++....+. +...|...+......++.++|.++.++++.. ++.   --..+|.++++.....|.-+...++|+++.+
T Consensus      1447 ferlvrssPN-SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcq 1525 (1710)
T KOG1070|consen 1447 FERLVRSSPN-SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQ 1525 (1710)
T ss_pred             HHHHHhcCCC-cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHH
Confidence            3444444444 5666777777788888888998888888764 111   1234677777777777878888888888877


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHH
Q 045674          491 EGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETA  568 (650)
Q Consensus       491 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~  568 (650)
                      . +. ....|..|...|.+.+++++|.++++.|.+. ..-....|..++..+.++.+-++|..++.++++.-|.  ..+.
T Consensus      1526 y-cd-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~ 1602 (1710)
T KOG1070|consen 1526 Y-CD-AYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEF 1602 (1710)
T ss_pred             h-cc-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHH
Confidence            5 22 3456778888888888889999999888865 2346778888888888888888888888888877666  5667


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---hhhhhhhhccc
Q 045674          569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR---MGSIKRRVKFR  645 (650)
Q Consensus       569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~~~~~  645 (650)
                      ....+..-.+.|+.+.+..+|+..+... |.-...|..+++.-.++|+.+.++.+|+++++++..+   ...+++++.|+
T Consensus      1603 IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyE 1681 (1710)
T KOG1070|consen 1603 ISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYE 1681 (1710)
T ss_pred             HHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHH
Confidence            7778888888898888888988888764 6677888888888888899899999999998888875   23455555555


Q ss_pred             c
Q 045674          646 S  646 (650)
Q Consensus       646 ~  646 (650)
                      +
T Consensus      1682 k 1682 (1710)
T KOG1070|consen 1682 K 1682 (1710)
T ss_pred             H
Confidence            4

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.94  E-value=0.0001  Score=75.73  Aligned_cols=226  Identities=12%  Similarity=0.057  Sum_probs=143.2

Q ss_pred             CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674          123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL  202 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  202 (650)
                      ..++...|++-...+.++.  |....+-..=+-.+.+.|+.++|..+++.....+ ..|..+...+-..|...|+.++|.
T Consensus        21 d~~qfkkal~~~~kllkk~--Pn~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~-~~D~~tLq~l~~~y~d~~~~d~~~   97 (932)
T KOG2053|consen   21 DSSQFKKALAKLGKLLKKH--PNALYAKVLKALSLFRLGKGDEALKLLEALYGLK-GTDDLTLQFLQNVYRDLGKLDEAV   97 (932)
T ss_pred             hhHHHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHhcCchhHHHHHhhhccCC-CCchHHHHHHHHHHHHHhhhhHHH
Confidence            3456777888887766652  3333333333444578889999998888777665 347888888888899999999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC-Chh---------HHH
Q 045674          203 WVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG-KTQ---------KAM  272 (650)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~---------~A~  272 (650)
                      .+|++..+.  .|+......++.+|++.+++.+-.++--++-+ .++.+...+=.++..+.+.- ..+         -|.
T Consensus        98 ~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK-~~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~  174 (932)
T KOG2053|consen   98 HLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYK-NFPKRAYYFWSVISLILQSIFSENELLDPILLALAE  174 (932)
T ss_pred             HHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-hCCcccchHHHHHHHHHHhccCCcccccchhHHHHH
Confidence            999988875  45677777788888888877654444333332 12334444444555444431 111         244


Q ss_pred             HHHHHHHhCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 045674          273 EKFRAMEARN-VQPDKITYMTLIQACYLEGDFDSCLSLY-HEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIR  350 (650)
Q Consensus       273 ~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  350 (650)
                      ..++.+.+.+ .--+..-.......+-..|.+++|++++ ....+.-...+...-+.-+..+...+++.+..++..+++.
T Consensus       175 ~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~  254 (932)
T KOG2053|consen  175 KMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLE  254 (932)
T ss_pred             HHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHH
Confidence            5555555543 1112222333345556778889998888 3444443444555556677788888888888888888888


Q ss_pred             cCCC
Q 045674          351 RGCQ  354 (650)
Q Consensus       351 ~~~~  354 (650)
                      .|..
T Consensus       255 k~~D  258 (932)
T KOG2053|consen  255 KGND  258 (932)
T ss_pred             hCCc
Confidence            7543

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.93  E-value=3.3e-07  Score=96.59  Aligned_cols=232  Identities=16%  Similarity=0.139  Sum_probs=149.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLI  434 (650)
Q Consensus       356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  434 (650)
                      +...+..|+..|...+++++|..+.+...+.  .|+.. .|..+...+.+.++.+++..+                 .++
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~~l   90 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSRRPLNDSNLL-----------------NLI   90 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhhcchhhhhhh-----------------hhh
Confidence            4567888899998999999999999877665  45533 344444456666665555443                 233


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          435 DGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNE  514 (650)
Q Consensus       435 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  514 (650)
                      .......++.....+...+...  ..+...+..++.+|.+.|+.++|..+++++++..+. |+.+.|.++..|... +.+
T Consensus        91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~  166 (906)
T PRK14720         91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKE  166 (906)
T ss_pred             hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHH
Confidence            3333334443333444444442  345557777788888888888888888888777644 777778888777777 788


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--------------------HHHHHHHHH
Q 045674          515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP--------------------ETAFEDMIT  574 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------------------~~~~~~l~~  574 (650)
                      +|.+++.+++..               +...+++.++.++|.++....+.+                    ...+..+-.
T Consensus       167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d~d~f~~i~~ki~~~~~~~~~~~~~~~l~~  231 (906)
T PRK14720        167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDDFDFFLRIERKVLGHREFTRLVGLLEDLYE  231 (906)
T ss_pred             HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCcccchHHHHHHHHHHhhhccchhHHHHHHHHH
Confidence            888877777653               333445555555555555544442                    233444456


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          575 CLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .|...++|++++.+++.+++.. +.|..+..-++.+|.  ++|.. ...+++.++
T Consensus       232 ~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~--~kY~~-~~~~ee~l~  282 (906)
T PRK14720        232 PYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK--EKYKD-HSLLEDYLK  282 (906)
T ss_pred             HHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH--HHccC-cchHHHHHH
Confidence            7778888999999999999886 667777788888776  33333 444444444

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.89  E-value=3e-06  Score=74.09  Aligned_cols=250  Identities=15%  Similarity=0.127  Sum_probs=157.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 045674          329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL  408 (650)
Q Consensus       329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  408 (650)
                      ++-+.-.|.+..++..-.......  -++..-..+.++|...|.+...+.   ++... -.|.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~---eI~~~-~~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVIS---EIKEG-KATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccc---ccccc-cCChHHHHHHHHHHhhCcchh
Confidence            344555677776665554443331  244444456677777776554433   22222 244444444444444444554


Q ss_pred             HHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          409 EEAMQY-FEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR  487 (650)
Q Consensus       409 ~~a~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (650)
                      ++-+.- .+.+.......+......-+..|++.+++++|++.....      .+......=+.++.+..+++-|.+.+++
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~------~~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLG------ENLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhcc------chHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444333 344444444434344444556688888888888877652      2333444445556777888888888888


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674          488 MEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       488 ~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      |.+.   .+..|.+.|..++.+    .+...+|.-+|++|.++ ..|+..+.+..+.++...|++++|..+++.++..+.
T Consensus       163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            8874   266777777777753    45678888888888764 567888888888888888888888888888888888


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 045674          564 IPETAFEDMITCLCKTGRIKEAC-KLADGIVD  594 (650)
Q Consensus       564 ~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~  594 (650)
                      .+++++.+++.+-...|...++. +.+.+...
T Consensus       239 ~dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~  270 (299)
T KOG3081|consen  239 KDPETLANLIVLALHLGKDAEVTERNLSQLKL  270 (299)
T ss_pred             CCHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence            88888888877777777765553 44444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.89  E-value=2.2e-06  Score=81.73  Aligned_cols=149  Identities=16%  Similarity=0.119  Sum_probs=97.3

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ....+.....+...|++++|+..++.+++..+. |...+......+.+.++..+|.+.++++....+. .......++.+
T Consensus       306 ~aa~YG~A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~-~~~l~~~~a~a  383 (484)
T COG4783         306 LAAQYGRALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPN-SPLLQLNLAQA  383 (484)
T ss_pred             hHHHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-ccHHHHHHHHH
Confidence            334444555566667777777777777665432 5555666666777777777777777777765332 24455566777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      |.+.|+..+|+.+++......+.++..|..|+++|...|+..+|.....                  ..|.-.|+++.|+
T Consensus       384 ll~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~A------------------E~~~~~G~~~~A~  445 (484)
T COG4783         384 LLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARA------------------EGYALAGRLEQAI  445 (484)
T ss_pred             HHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHH------------------HHHHhCCCHHHHH
Confidence            7777777777777777777777777777777777777777666544433                  3345566666666


Q ss_pred             HHHHHHHHC
Q 045674          622 KLMHSKIGV  630 (650)
Q Consensus       622 ~~~~~~~~~  630 (650)
                      ..+..+.++
T Consensus       446 ~~l~~A~~~  454 (484)
T COG4783         446 IFLMRASQQ  454 (484)
T ss_pred             HHHHHHHHh
Confidence            666666654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.87  E-value=3.9e-06  Score=73.41  Aligned_cols=254  Identities=14%  Similarity=0.121  Sum_probs=143.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH
Q 045674          294 IQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSM  373 (650)
Q Consensus       294 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  373 (650)
                      ++-+.-.|+|..++..-.......  -+...-..+.+.|...|.+.....-.   ... -.|.......+......-++.
T Consensus        15 iRn~fY~Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI---~~~-~~~~lqAvr~~a~~~~~e~~~   88 (299)
T KOG3081|consen   15 IRNYFYLGNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEI---KEG-KATPLQAVRLLAEYLELESNK   88 (299)
T ss_pred             HHHHHHhhHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHccccccccccc---ccc-cCChHHHHHHHHHHhhCcchh
Confidence            344555677777766655544432  23344444556666666654433222   211 122333333333333333443


Q ss_pred             HHHH-HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          374 NEAI-NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEE  452 (650)
Q Consensus       374 ~~A~-~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  452 (650)
                      ++-+ ++.+.+......-+......-...|++.|++++|++......      +......=...+.+..+++-|.+.++.
T Consensus        89 ~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~  162 (299)
T KOG3081|consen   89 KSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKK  162 (299)
T ss_pred             HHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333 334444443333333334444445777778887777766511      233333334456666777777777777


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          453 MVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI  528 (650)
Q Consensus       453 ~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  528 (650)
                      |.+-   .+..+.+.|+.++.+    .+++.+|.-+|++|.++ ..|+..+.+....++...|++++|..+++.++....
T Consensus       163 mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~  238 (299)
T KOG3081|consen  163 MQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDA  238 (299)
T ss_pred             HHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccC
Confidence            7764   355666666666654    34577777777777764 456777777777777777888888888877776654


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhCCCC
Q 045674          529 TPTAASFRALSIGLCLSGKVAR-ACKILDELAPKGII  564 (650)
Q Consensus       529 ~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~  564 (650)
                      . ++.++..++.+-...|+..+ -.+.+.+.....|.
T Consensus       239 ~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~~p~  274 (299)
T KOG3081|consen  239 K-DPETLANLIVLALHLGKDAEVTERNLSQLKLSHPE  274 (299)
T ss_pred             C-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhcCCc
Confidence            4 66666666666666665544 34555555554443

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.84  E-value=4.7e-06  Score=72.32  Aligned_cols=199  Identities=16%  Similarity=0.086  Sum_probs=154.6

Q ss_pred             hcCCHHHHHHHHHHHHH---CC-CCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 045674          369 KLGSMNEAINIFERMKY---EG-VEPDEV-TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV  443 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~---~~-~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  443 (650)
                      ...+.++..+++.++..   .| ..++.. .|..++-+....|+.+.|...++.+...-+. +..+-..-+..+-..|++
T Consensus        24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~-S~RV~~lkam~lEa~~~~  102 (289)
T KOG3060|consen   24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPG-SKRVGKLKAMLLEATGNY  102 (289)
T ss_pred             cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCC-ChhHHHHHHHHHHHhhch
Confidence            34678899998888864   23 445544 4556666777889999999999998887533 555544455556778999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          444 DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMM  523 (650)
Q Consensus       444 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  523 (650)
                      ++|+++++.+++.+ |.|..++-.-+......|+--+|++-+....+. +..|...|..+...|...|++++|.-+++++
T Consensus       103 ~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~  180 (289)
T KOG3060|consen  103 KEAIEYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFCLEEL  180 (289)
T ss_pred             hhHHHHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHH
Confidence            99999999999986 778888887777888889888999988888887 4459999999999999999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674          524 IDKGITPTAASFRALSIGLCLSG---KVARACKILDELAPKGIIPETAFED  571 (650)
Q Consensus       524 ~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~  571 (650)
                      +-..+. ++..+..++..+.-.|   +.+-|.++|.++++..+.+...+.-
T Consensus       181 ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~~ral~G  230 (289)
T KOG3060|consen  181 LLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKNLRALFG  230 (289)
T ss_pred             HHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHhHHHHHH
Confidence            976444 6677778888776655   6778999999999987654444433

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.77  E-value=4.1e-07  Score=75.73  Aligned_cols=111  Identities=15%  Similarity=0.141  Sum_probs=89.0

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674          484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      .+++++...+. +......++..+...|++++|...++.+...++. +...+..++..+...|++++|..+++++.+.++
T Consensus         5 ~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p   82 (135)
T TIGR02552         5 TLKDLLGLDSE-QLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPY-NSRYWLGLAACCQMLKEYEEAIDAYALAAALDP   82 (135)
T ss_pred             hHHHHHcCChh-hHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            45555555333 4455666777788888999999998888876544 677888888888888999999999999888888


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          564 IPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .+...+..++.++...|++++|...|+++++..
T Consensus        83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  115 (135)
T TIGR02552        83 DDPRPYFHAAECLLALGEPESALKALDLAIEIC  115 (135)
T ss_pred             CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence            888888889999999999999999999988875

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.75  E-value=6.6e-06  Score=87.06  Aligned_cols=150  Identities=9%  Similarity=0.049  Sum_probs=71.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA  473 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (650)
                      .+..+..+|-+.|+.++|..+++++++.++. |..+.+.++..|... ++++|.+++.+++..               |.
T Consensus       118 Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~---------------~i  180 (906)
T PRK14720        118 ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR---------------FI  180 (906)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH---------------HH
Confidence            4444555555555555555555555555533 555555555555555 555555555555443               33


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ..+++..+.+++.++....+. +...+..+.                +++... |..--..++.-+...|...++++++.
T Consensus       181 ~~kq~~~~~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i  243 (906)
T PRK14720        181 KKKQYVGIEEIWSKLVHYNSD-DFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVI  243 (906)
T ss_pred             hhhcchHHHHHHHHHHhcCcc-cchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHH
Confidence            344555555555555544221 211111111                111110 11111222333334444555566666


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          553 KILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      .+++.+++..+.+..+...++.+|.
T Consensus       244 ~iLK~iL~~~~~n~~a~~~l~~~y~  268 (906)
T PRK14720        244 YILKKILEHDNKNNKAREELIRFYK  268 (906)
T ss_pred             HHHHHHHhcCCcchhhHHHHHHHHH
Confidence            6666666665555555555555554

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.67  E-value=4.4e-06  Score=79.75  Aligned_cols=131  Identities=15%  Similarity=0.046  Sum_probs=116.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  583 (650)
                      ...+...|++++|+..++.++...+. |...+...+..+...++..+|.+.+++++...|........++.+|.+.|+++
T Consensus       313 A~~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~  391 (484)
T COG4783         313 ALQTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQ  391 (484)
T ss_pred             HHHHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChH
Confidence            33456789999999999999887544 77777888899999999999999999999999998999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      +|+.+++...... +.|+..|..|+.+|...|+..+|.....+.....-....
T Consensus       392 eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~~~~G~~~~  443 (484)
T COG4783         392 EAIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEGYALAGRLEQ  443 (484)
T ss_pred             HHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHHHHhCCCHHH
Confidence            9999999999876 889999999999999999999999999888776444433

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.67  E-value=5.4e-07  Score=73.39  Aligned_cols=98  Identities=12%  Similarity=0.026  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      ..+..++..+...|++++|.++|+.+...+|.+...|..|+-++...|++++|+..|..+...+ +.|+..+..++.++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L  114 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence            3444556666777777777777777777777777777777777777777777777777777776 567777777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCC
Q 045674          613 KAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       613 ~~g~~~~A~~~~~~~~~~~  631 (650)
                      ..|+.+.|++.|+.++...
T Consensus       115 ~lG~~~~A~~aF~~Ai~~~  133 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRIC  133 (157)
T ss_pred             HcCCHHHHHHHHHHHHHHh
Confidence            7777777777777777764

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.57  E-value=4.6e-06  Score=70.01  Aligned_cols=117  Identities=15%  Similarity=0.064  Sum_probs=76.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~  583 (650)
                      ..++...+...++.+.+....-.  ......++..+...|++++|...|+.+....+.+   ..+...++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            36777777777777776533311  2233445566777777777777777777765432   334556777777788888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      +|+..++.....  ...+..+...+++|...|++++|+..|+++
T Consensus       103 ~Al~~L~~~~~~--~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen  103 EALATLQQIPDE--AFKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHHHhccCc--chHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            888777664322  334556667777788888888888877765

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.56  E-value=1.1e-06  Score=78.51  Aligned_cols=108  Identities=15%  Similarity=0.104  Sum_probs=67.8

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      -+.+.++|++|+..|.++++..+. |...|..-+.+|.+.|.++.|++-.+.++..++.....|..|+.+|...|++++|
T Consensus        90 ~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A  168 (304)
T KOG0553|consen   90 KLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA  168 (304)
T ss_pred             HHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence            345666777777777777765444 5555666666677777777777777777776666667777777777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKAG  615 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  615 (650)
                      ++.|+++++.+ |.+......|-.+-.+.+
T Consensus       169 ~~aykKaLeld-P~Ne~~K~nL~~Ae~~l~  197 (304)
T KOG0553|consen  169 IEAYKKALELD-PDNESYKSNLKIAEQKLN  197 (304)
T ss_pred             HHHHHhhhccC-CCcHHHHHHHHHHHHHhc
Confidence            77777777654 333433344444333333

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.56  E-value=0.0017  Score=67.17  Aligned_cols=223  Identities=13%  Similarity=0.076  Sum_probs=148.7

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhH
Q 045674          158 ALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKS--FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIES  235 (650)
Q Consensus       158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~  235 (650)
                      ...++|..|..-.+.+.++  .|+.. +...+.+  +.+.|+.++|..+++.....+.. |..|...+-.+|...++.++
T Consensus        20 ld~~qfkkal~~~~kllkk--~Pn~~-~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~   95 (932)
T KOG2053|consen   20 LDSSQFKKALAKLGKLLKK--HPNAL-YAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDE   95 (932)
T ss_pred             hhhHHHHHHHHHHHHHHHH--CCCcH-HHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhH
Confidence            4567889999999998887  33433 3334444  46889999999999988776555 88899999999999999999


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-C---------HHH
Q 045674          236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEG-D---------FDS  305 (650)
Q Consensus       236 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~---------~~~  305 (650)
                      |..++++....  .|+......+..+|.+.+++.+-.+.--++-+. .+-+.+.+-+++..+...- .         ..-
T Consensus        96 ~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L  172 (932)
T KOG2053|consen   96 AVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL  172 (932)
T ss_pred             HHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence            99999999865  567777777888888888776544333333332 2334455555555444321 1         234


Q ss_pred             HHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCChHHHHHHHH-HHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          306 CLSLYHEMDEKG-IEIPSHAYNLVIGGLCKVGKCIEGHAIFE-SMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERM  383 (650)
Q Consensus       306 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  383 (650)
                      |.+.++.+.+.+ ......-...-...+...|++++|.+++. ...+.-..-+...-+.-+..+...+++.+..++-.++
T Consensus       173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L  252 (932)
T KOG2053|consen  173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL  252 (932)
T ss_pred             HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            666667766654 22122222333445567888999999983 3333322334444455667778888888888888888


Q ss_pred             HHCC
Q 045674          384 KYEG  387 (650)
Q Consensus       384 ~~~~  387 (650)
                      ...|
T Consensus       253 l~k~  256 (932)
T KOG2053|consen  253 LEKG  256 (932)
T ss_pred             HHhC
Confidence            8764

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.55  E-value=2.9e-06  Score=68.79  Aligned_cols=102  Identities=14%  Similarity=0.060  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHH
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTAL  607 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l  607 (650)
                      ++..++..+...|++++|.+.++.+....+.+   ..++..++.++...|++++|.+.++.++... +.   ...++..+
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~   82 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKY-PKSPKAPDALLKL   82 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHC-CCCCcccHHHHHH
Confidence            45566666777777777777777777665542   4566667777777777777777777777653 22   24566677


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          608 INALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       608 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      +.++.+.|++++|...++++++..+....
T Consensus        83 ~~~~~~~~~~~~A~~~~~~~~~~~p~~~~  111 (119)
T TIGR02795        83 GMSLQELGDKEKAKATLQQVIKRYPGSSA  111 (119)
T ss_pred             HHHHHHhCChHHHHHHHHHHHHHCcCChh
Confidence            77777777888888888877777666543

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.52  E-value=4.4e-06  Score=80.84  Aligned_cols=120  Identities=15%  Similarity=0.125  Sum_probs=70.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  583 (650)
                      +..+...++++.|+.+++++.+..  |+  ....+++.+...++-.+|.++++++++..+.+...+...+..|...++++
T Consensus       176 l~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl~k~~~~  251 (395)
T PF09295_consen  176 LKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLLSKKKYE  251 (395)
T ss_pred             HHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHH
Confidence            333444556666666666665542  23  22335555555566666666666666655556666666666666666666


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                      .|+++.+++.+.. |.+-.+|..|+.+|...|+++.|+-.++.+-
T Consensus       252 lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P  295 (395)
T PF09295_consen  252 LALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCP  295 (395)
T ss_pred             HHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence            6666666666654 4455566666666666666666666665544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.51  E-value=2.4e-05  Score=72.94  Aligned_cols=341  Identities=13%  Similarity=-0.015  Sum_probs=168.1

Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHH
Q 045674          261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIE  340 (650)
Q Consensus       261 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  340 (650)
                      .+.+..++.+|+..+....+... .+..-|..-+..+...|+++++.--.+.-++.... ..........++...++..+
T Consensus        58 ~~yk~k~Y~nal~~yt~Ai~~~p-d~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~kd~-~~k~~~r~~~c~~a~~~~i~  135 (486)
T KOG0550|consen   58 AFYKQKTYGNALKNYTFAIDMCP-DNASYYSNRAATLMMLGRFEEALGDARQSVRLKDG-FSKGQLREGQCHLALSDLIE  135 (486)
T ss_pred             hHHHHhhHHHHHHHHHHHHHhCc-cchhhhchhHHHHHHHHhHhhcccchhhheecCCC-ccccccchhhhhhhhHHHHH
Confidence            44555666666666666666532 23445555555666666666666555444433211 12233333344444444444


Q ss_pred             HHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHhHHHHH-HHHHhcCCHHHHHHHHHHH
Q 045674          341 GHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPDEVTYGVII-SGLCKNERLEEAMQYFEFC  418 (650)
Q Consensus       341 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~  418 (650)
                      |.+.++.         ...+           ....++..++.+..... .|...++..+- .++.-.|++++|.+.--.+
T Consensus       136 A~~~~~~---------~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~~i  195 (486)
T KOG0550|consen  136 AEEKLKS---------KQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAIDI  195 (486)
T ss_pred             HHHHhhh---------hhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHHHH
Confidence            4444431         0001           11122222222222111 12223333222 2334456666666655555


Q ss_pred             HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-------------HHHHHHHHHHHcCCHHHHHHHH
Q 045674          419 RANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSY-------------CYNVLIDALAKCGKLDEALALF  485 (650)
Q Consensus       419 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~-------------~~~~l~~~~~~~g~~~~A~~~~  485 (650)
                      .+.+.. +......-..++.-.++.+.|...|++.+..+  |+..             .+..-++-..+.|++..|.+.|
T Consensus       196 lkld~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~A~E~Y  272 (486)
T KOG0550|consen  196 LKLDAT-NAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRKAYECY  272 (486)
T ss_pred             Hhcccc-hhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhHHHHHH
Confidence            544322 22222222233344556666666666666543  2221             1222234456788888888888


Q ss_pred             HHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674          486 KRMEDEG---CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG  562 (650)
Q Consensus       486 ~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  562 (650)
                      .+.+...   ..++...|.....+..+.|+.++|+.--+++.+.... -...+..-+.++...+++++|.+.++++.+..
T Consensus       273 teal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  273 TEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            8887653   3355566666666777888888888888777764211 12233344556667788888888888887654


Q ss_pred             CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHH
Q 045674          563 II--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL---RKAGNADLAIKLMHSKI  628 (650)
Q Consensus       563 ~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~  628 (650)
                      ..  ....+.....++-+..+.+- .+++--.......+....|..++-.+   ...|.-.+|...|+++-
T Consensus       352 ~s~e~r~~l~~A~~aLkkSkRkd~-ykilGi~~~as~~eikkayrk~AL~~Hpd~~agsq~eaE~kFkevg  421 (486)
T KOG0550|consen  352 KDCEIRRTLREAQLALKKSKRKDW-YKILGISRNASDDEIKKAYRKLALVHHPDKNAGSQKEAEAKFKEVG  421 (486)
T ss_pred             cccchHHHHHHHHHHHHHhhhhhH-HHHhhhhhhcccchhhhHHHHHHHHhCCCcCcchhHHHHHHHHHHH
Confidence            33  33444444444433322111 11111111112234445565554443   23455566666666543

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.50  E-value=1.8e-06  Score=84.17  Aligned_cols=106  Identities=11%  Similarity=-0.014  Sum_probs=84.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      ..+..+...|++++|+.+|+++++..+. +...+..++.+|...|++++|+..+++++..++.+..+|..++.+|...|+
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~   85 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEE   85 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCC
Confidence            3455667788999999999998887555 677888888888889999999999999988888888888888999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          582 IKEACKLADGIVDREREIPGKIRTALIN  609 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~  609 (650)
                      +++|+..|+++++.+ +.+..+...+..
T Consensus        86 ~~eA~~~~~~al~l~-P~~~~~~~~l~~  112 (356)
T PLN03088         86 YQTAKAALEKGASLA-PGDSRFTKLIKE  112 (356)
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            999999999988876 555555444433

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.50  E-value=2.6e-06  Score=65.90  Aligned_cols=97  Identities=14%  Similarity=0.076  Sum_probs=68.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA  614 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (650)
                      +..++..+...|++++|..+++++.+..+.+...+..++.++...|++++|.+.++.+.+.. +.+..++..++..+...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            34556666677777777777777777666666677777777777777777777777777664 44556677777777777


Q ss_pred             CCHHHHHHHHHHHHHCCC
Q 045674          615 GNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       615 g~~~~A~~~~~~~~~~~~  632 (650)
                      |++++|...++++++.++
T Consensus        82 ~~~~~a~~~~~~~~~~~~   99 (100)
T cd00189          82 GKYEEALEAYEKALELDP   99 (100)
T ss_pred             HhHHHHHHHHHHHHccCC
Confidence            777777777777766543

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.48  E-value=1.4e-05  Score=66.96  Aligned_cols=119  Identities=14%  Similarity=0.102  Sum_probs=85.6

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQT--VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVA  549 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~  549 (650)
                      ..++...+...++.+.+......  ....-.+...+...|++++|...|+.+.+....++.  .....++.++...|+++
T Consensus        23 ~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d  102 (145)
T PF09976_consen   23 QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYD  102 (145)
T ss_pred             HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence            47788888888888887644321  233334556777889999999999988876533332  23445678888899999


Q ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      +|+..++..... ...+..+...+.++...|++++|+..|++++
T Consensus       103 ~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al  145 (145)
T PF09976_consen  103 EALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQKAL  145 (145)
T ss_pred             HHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence            999998774322 2356677888999999999999999988763

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.48  E-value=2.5e-06  Score=76.33  Aligned_cols=131  Identities=14%  Similarity=-0.012  Sum_probs=99.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK  547 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  547 (650)
                      -+.-+.+.++|.+|+..|.++++..+. |.+.|..-..+|.+.|.++.|++-.+..+..++. ...+|..|+.+|...|+
T Consensus        87 eGN~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk  164 (304)
T KOG0553|consen   87 EGNKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGK  164 (304)
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCc
Confidence            355677888999999999999987554 7777888888899999999999988888875433 45688889999999999


Q ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH---HHHHHHHHHHHcCCCCC
Q 045674          548 VARACKILDELAPKGIIPETAFEDMITCLCKTGRIK---EACKLADGIVDREREIP  600 (650)
Q Consensus       548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~~~~~~~~  600 (650)
                      +++|++.|+++++.+|.+......|-.+-.+.+...   .+..-++-....+..|+
T Consensus       165 ~~~A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~~~~~~~~~~d~~~~ig~~Pd  220 (304)
T KOG0553|consen  165 YEEAIEAYKKALELDPDNESYKSNLKIAEQKLNEPKSSAQASGSFDMAGLIGAFPD  220 (304)
T ss_pred             HHHHHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCCcccccccchhhhhhccCCcc
Confidence            999999999999998888877777766666655544   44455555544453343

>PF12854 PPR_1: PPR repeat

Probab=98.47  E-value=2.2e-07  Score=54.69  Aligned_cols=32  Identities=56%  Similarity=1.022  Sum_probs=16.8

Q ss_pred             CCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045674          247 KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAM  278 (650)
Q Consensus       247 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  278 (650)
                      |+.||..+|++||++||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            34455555555555555555555555555544

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.47  E-value=1.1e-05  Score=78.05  Aligned_cols=121  Identities=14%  Similarity=0.173  Sum_probs=67.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      .|+..+...++++.|+.+|+++.+..  |+  ....++..+...++..+|.+++++.++..+. +...+...+..+...+
T Consensus       174 ~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~k~  248 (395)
T PF09295_consen  174 TLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLSKK  248 (395)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence            34444444555666666666665542  22  2233455555555556666666666544332 4555555555556666


Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      +++.|+++.+++.+..|.+...|..|+.+|...|++++|+-.++.+
T Consensus       249 ~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  249 KYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             CHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            6666666666666665556666666666666666666666555443

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=98.44  E-value=2e-05  Score=73.39  Aligned_cols=159  Identities=15%  Similarity=0.066  Sum_probs=111.9

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-------------HH
Q 045674          435 DGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT-------------YT  501 (650)
Q Consensus       435 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-------------~~  501 (650)
                      .++.-.++.++|..+--..++.+ ..+......-..++.-.++.+.|...|++.+..++.  ...             +.
T Consensus       177 ~cl~~~~~~~~a~~ea~~ilkld-~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ldpd--h~~sk~~~~~~k~le~~k  253 (486)
T KOG0550|consen  177 ECLAFLGDYDEAQSEAIDILKLD-ATNAEALYVRGLCLYYNDNADKAINHFQQALRLDPD--HQKSKSASMMPKKLEVKK  253 (486)
T ss_pred             hhhhhcccchhHHHHHHHHHhcc-cchhHHHHhcccccccccchHHHHHHHhhhhccChh--hhhHHhHhhhHHHHHHHH
Confidence            45566788888888887777764 445555555555566678888999999888876432  221             11


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDK---GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                      .=+.-..+.|++.+|.+.|.+.+..   +..++...|...+.+..+.|+.++|+.--+++.+.++.-...+..-+.|+..
T Consensus       254 ~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~  333 (486)
T KOG0550|consen  254 ERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLA  333 (486)
T ss_pred             hhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHH
Confidence            1222345678888888888888754   3344555666666777788888888888888888766666667777788888


Q ss_pred             cCCHHHHHHHHHHHHHcC
Q 045674          579 TGRIKEACKLADGIVDRE  596 (650)
Q Consensus       579 ~g~~~~A~~~~~~~~~~~  596 (650)
                      .++|++|.+.++++.+..
T Consensus       334 le~~e~AV~d~~~a~q~~  351 (486)
T KOG0550|consen  334 LEKWEEAVEDYEKAMQLE  351 (486)
T ss_pred             HHHHHHHHHHHHHHHhhc
Confidence            888888888888888764

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=98.42  E-value=8.7e-06  Score=66.48  Aligned_cols=97  Identities=12%  Similarity=-0.020  Sum_probs=79.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      ...-.+...+...|++++|..+|+-.....+. +..-|..|+-++-..|++++|+..|..+...+++++..+.+++.++.
T Consensus        36 ~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L  114 (157)
T PRK15363         36 NTLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence            33445556667888999999888888876554 66777888888888899999999999999888888888889999999


Q ss_pred             HcCCHHHHHHHHHHHHHc
Q 045674          578 KTGRIKEACKLADGIVDR  595 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~  595 (650)
                      ..|+.+.|++.|+.++..
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999998888765

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.42  E-value=1.5e-05  Score=72.01  Aligned_cols=100  Identities=14%  Similarity=0.079  Sum_probs=51.2

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG---KVARACKILDELAPKGIIPETAFEDM  572 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~l  572 (650)
                      |...|..|+.+|...|+++.|..-|.++.+...+ +...+..++.++..+.   ...++..+|++++..++.+......|
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~lL  233 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSLL  233 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHHH
Confidence            5555555555555555555555555555544222 4444444444443322   23445555555555555555555555


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          573 ITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       573 ~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +..+...|++.+|...|+.|++..
T Consensus       234 A~~afe~g~~~~A~~~Wq~lL~~l  257 (287)
T COG4235         234 AFAAFEQGDYAEAAAAWQMLLDLL  257 (287)
T ss_pred             HHHHHHcccHHHHHHHHHHHHhcC
Confidence            555555555555555555555543

>PF12854 PPR_1: PPR repeat

Probab=98.39  E-value=5.8e-07  Score=52.86  Aligned_cols=32  Identities=47%  Similarity=0.830  Sum_probs=19.7

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          492 GCDQTVYTYTILINGMFKEHRNEEALKLWDMM  523 (650)
Q Consensus       492 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  523 (650)
                      |+.||..+|+.|+.+|++.|+.++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            45566666666666666666666666666655

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=98.38  E-value=1.4e-05  Score=78.06  Aligned_cols=107  Identities=12%  Similarity=-0.028  Sum_probs=81.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      ..+..+...|++++|+..|+++++..+. +...|..+..+|...|++++|+..++++++..+. +...+..++.+|...|
T Consensus         7 ~~a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~-~~~a~~~lg~~~~~lg   84 (356)
T PLN03088          7 DKAKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDPS-LAKAYLRKGTACMKLE   84 (356)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHhC
Confidence            3455667778888888888888887554 6777777888888888888888888888876544 6667778888888888


Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      ++++|+..|+++++.++.+..+...+..+
T Consensus        85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~  113 (356)
T PLN03088         85 EYQTAKAALEKGASLAPGDSRFTKLIKEC  113 (356)
T ss_pred             CHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            88888888888888877776665555444

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.36  E-value=9.4e-07  Score=66.04  Aligned_cols=81  Identities=21%  Similarity=0.280  Sum_probs=51.9

Q ss_pred             cCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          545 SGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIK  622 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  622 (650)
                      .|++++|+.+++++.+..+.  +...+..++.++.+.|++++|+.++++ .+.+ +.+......++.+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~-~~~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLD-PSNPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHH-HCHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCC-CCCHHHHHHHHHHHHHhCCHHHHHH
Confidence            46777777777777766553  344555577777777777777777776 3332 2333455556777777777777777


Q ss_pred             HHHHH
Q 045674          623 LMHSK  627 (650)
Q Consensus       623 ~~~~~  627 (650)
                      .++++
T Consensus        80 ~l~~~   84 (84)
T PF12895_consen   80 ALEKA   84 (84)
T ss_dssp             HHHHH
T ss_pred             HHhcC
Confidence            77653

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=98.32  E-value=0.00025  Score=58.67  Aligned_cols=131  Identities=17%  Similarity=0.074  Sum_probs=83.6

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHH
Q 045674          495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDM  572 (650)
Q Consensus       495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l  572 (650)
                      |+...-..|..++.+.|++.||...|++....-..-|...+..++++....++..+|...++++.+..+.  .++....+
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~  166 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF  166 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence            4555555666666677777777777776665444456666666666777777777777777777666554  55555666


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          573 ITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      +..|...|++.+|+..|+.++..  .|+......+...+.++|+..+|..-+..+
T Consensus       167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v  219 (251)
T COG4700         167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV  219 (251)
T ss_pred             HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence            66777777777777777766643  455555555666666677666655444433

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=98.30  E-value=3.1e-05  Score=62.71  Aligned_cols=98  Identities=16%  Similarity=0.095  Sum_probs=62.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGIT--PTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMI  573 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~  573 (650)
                      ++..++..+...|++++|.+.++++.+..+.  .....+..++.++...|++++|...++.+....|.   ...++..++
T Consensus         4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~   83 (119)
T TIGR02795         4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG   83 (119)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence            3445555666667777777777776654322  11334555666777777777777777777765544   245666677


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcC
Q 045674          574 TCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .++...|++++|.+.++++++..
T Consensus        84 ~~~~~~~~~~~A~~~~~~~~~~~  106 (119)
T TIGR02795        84 MSLQELGDKEKAKATLQQVIKRY  106 (119)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHC
Confidence            77777777777777777777664

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=98.29  E-value=1.5e-06  Score=64.94  Aligned_cols=82  Identities=22%  Similarity=0.284  Sum_probs=52.9

Q ss_pred             cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045674          510 EHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL  588 (650)
Q Consensus       510 ~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  588 (650)
                      .|+++.|+.+++++.+..+. ++...+..++.++.+.|++++|..++++ .+.++.+......++.++.+.|++++|+++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~   80 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA   80 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            46777777777777765432 2344555567777777777777777777 444444555555667777777777777777


Q ss_pred             HHHH
Q 045674          589 ADGI  592 (650)
Q Consensus       589 ~~~~  592 (650)
                      ++++
T Consensus        81 l~~~   84 (84)
T PF12895_consen   81 LEKA   84 (84)
T ss_dssp             HHHH
T ss_pred             HhcC
Confidence            7653

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.27  E-value=5.4e-05  Score=65.71  Aligned_cols=83  Identities=13%  Similarity=0.110  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      .+..++..+...|++++|...|+++++....+.  ...+..++.++.+.|++++|...++++++..+.+...+..++.++
T Consensus        37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~  116 (172)
T PRK02603         37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY  116 (172)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            344445555555555555555555554322221  234555555566666666666666666655555555555555555


Q ss_pred             HHcCC
Q 045674          577 CKTGR  581 (650)
Q Consensus       577 ~~~g~  581 (650)
                      ...|+
T Consensus       117 ~~~g~  121 (172)
T PRK02603        117 HKRGE  121 (172)
T ss_pred             HHcCC
Confidence            55555

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=98.27  E-value=2e-05  Score=73.23  Aligned_cols=286  Identities=17%  Similarity=0.150  Sum_probs=154.6

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHH--H--CCCCC-CHHhHHHHH
Q 045674          329 IGGLCKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMK--Y--EGVEP-DEVTYGVII  399 (650)
Q Consensus       329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~--~~~~p-~~~~~~~l~  399 (650)
                      ..-+|+.|+......+|+..++.|.. |    ..+|..|..+|.-.+++++|+++-..=.  .  .|-+. ...+-..+.
T Consensus        24 GERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL~DY~kAl~yH~hDltlar~lgdklGEAKssgNLG  102 (639)
T KOG1130|consen   24 GERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYLKDYEKALKYHTHDLTLARLLGDKLGEAKSSGNLG  102 (639)
T ss_pred             HHHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhHhhHHHHHhhhhhhHHHHHHhcchhcccccccccc
Confidence            45678888888889999888887643 3    3466777777777888888887543210  0  01010 122333344


Q ss_pred             HHHHhcCCHHHHHHHHHH----HHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674          400 SGLCKNERLEEAMQYFEF----CRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK  474 (650)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~----~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (650)
                      ..+--.|.+++|+....+    ..+.|-.. ....+..+...|...|+.-...    .-.+.|-.++. +-         
T Consensus       103 NtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~----~pee~g~f~~e-v~---------  168 (639)
T KOG1130|consen  103 NTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLE----APEEKGAFNAE-VT---------  168 (639)
T ss_pred             chhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCC----ChhhcccccHH-HH---------
Confidence            445556666666554432    22222111 1223333444444443211000    00000000000 00         


Q ss_pred             cCCHHHHHHHHHHHH----HcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHh
Q 045674          475 CGKLDEALALFKRME----DEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMI----DKGIT-PTAASFRALSIGLCL  544 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~-p~~~~~~~l~~~~~~  544 (650)
                       ..++.|.++|.+=+    +.|-. ..-..|..|+..|.-.|+++.|+...+.-+    +.|-. .....+..++.++.-
T Consensus       169 -~al~~Av~fy~eNL~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hif  247 (639)
T KOG1130|consen  169 -SALENAVKFYMENLELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIF  247 (639)
T ss_pred             -HHHHHHHHHHHHHHHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhh
Confidence             01222333332211    11100 012345566666777788888876655432    22322 123456677888888


Q ss_pred             cCCHHHHHHHHHHHh----hCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHh
Q 045674          545 SGKVARACKILDELA----PKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDRE-----REIPGKIRTALINALRK  613 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~----~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~  613 (650)
                      .|+++.|.+.|+...    +.|-.  .......|+..|.-..++++|+.++.+-+...     .--...++..|+.++..
T Consensus       248 lg~fe~A~ehYK~tl~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~a  327 (639)
T KOG1130|consen  248 LGNFELAIEHYKLTLNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNA  327 (639)
T ss_pred             hcccHhHHHHHHHHHHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh
Confidence            888888888887755    33333  44566778888888888888888877654321     11234566778888888


Q ss_pred             cCCHHHHHHHHHHHHHC
Q 045674          614 AGNADLAIKLMHSKIGV  630 (650)
Q Consensus       614 ~g~~~~A~~~~~~~~~~  630 (650)
                      .|..++|..+.+..++.
T Consensus       328 lg~h~kAl~fae~hl~~  344 (639)
T KOG1130|consen  328 LGEHRKALYFAELHLRS  344 (639)
T ss_pred             hhhHHHHHHHHHHHHHH
Confidence            88888888887766654

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=98.26  E-value=8.5e-05  Score=75.69  Aligned_cols=83  Identities=16%  Similarity=0.111  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHhhC--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          549 ARACKILDELAPK--GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       549 ~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      ..+.+..+++...  .+.++.++..++......|++++|...++++++.+  |+...|..++..+...|+.++|.+.+++
T Consensus       401 ~~a~~~~~~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~  478 (517)
T PRK10153        401 AALSTELDNIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYST  478 (517)
T ss_pred             HHHHHHHHHhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            3444444444332  33355666666666666777777777777777765  4666777777777777777777777777


Q ss_pred             HHHCCCC
Q 045674          627 KIGVGYD  633 (650)
Q Consensus       627 ~~~~~~~  633 (650)
                      ++..++.
T Consensus       479 A~~L~P~  485 (517)
T PRK10153        479 AFNLRPG  485 (517)
T ss_pred             HHhcCCC
Confidence            7777665

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.25  E-value=4.8e-06  Score=59.52  Aligned_cols=65  Identities=15%  Similarity=0.147  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCC
Q 045674          566 ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG-NADLAIKLMHSKIGVG  631 (650)
Q Consensus       566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  631 (650)
                      +..|..++..+...|++++|+..|+++++.+ +.+..+|..++.+|...| ++++|++.++++++..
T Consensus         3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~-p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELD-PNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHS-TTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            4455556666666666666666666666654 445556666666666666 4666666666665543

...

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=98.23  E-value=2.8e-05  Score=59.97  Aligned_cols=95  Identities=17%  Similarity=0.155  Sum_probs=68.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT  579 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  579 (650)
                      +..++..+...|++++|...++++.+.... +...+..++.++...|++++|.+.++.+....+.+...+..++.++...
T Consensus         3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           3 LLNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence            445556666777777777777777765332 3456666777777778888888888887777666667777788888888


Q ss_pred             CCHHHHHHHHHHHHHc
Q 045674          580 GRIKEACKLADGIVDR  595 (650)
Q Consensus       580 g~~~~A~~~~~~~~~~  595 (650)
                      |++++|...++++.+.
T Consensus        82 ~~~~~a~~~~~~~~~~   97 (100)
T cd00189          82 GKYEEALEAYEKALEL   97 (100)
T ss_pred             HhHHHHHHHHHHHHcc
Confidence            8888888888777654

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.19  E-value=9.6e-06  Score=57.06  Aligned_cols=57  Identities=16%  Similarity=0.131  Sum_probs=30.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      +..+...|++++|.+.|+++++..|.+..++..++.++...|++++|..+|+++++.
T Consensus         4 a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~   60 (65)
T PF13432_consen    4 ARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL   60 (65)
T ss_dssp             HHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            344455555555555555555555555555555555555555555555555555544

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.17  E-value=4.1e-05  Score=66.23  Aligned_cols=81  Identities=15%  Similarity=0.094  Sum_probs=46.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITP--TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT  574 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  574 (650)
                      ...|..++..+...|++++|+..|++++.....+  ...++..++.++...|++++|.+.++++....+.....+..++.
T Consensus        35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~  114 (168)
T CHL00033         35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence            3344555555556666666666666665543222  12355666666666666666666666666655555555555555


Q ss_pred             HHH
Q 045674          575 CLC  577 (650)
Q Consensus       575 ~~~  577 (650)
                      ++.
T Consensus       115 i~~  117 (168)
T CHL00033        115 ICH  117 (168)
T ss_pred             HHH
Confidence            555

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=98.17  E-value=5.7e-05  Score=65.57  Aligned_cols=102  Identities=13%  Similarity=0.051  Sum_probs=86.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALI  608 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  608 (650)
                      ...+..++..+...|++++|..+++++++..+.   ....+..++.++...|++++|+..++++++.. +.+...+..++
T Consensus        35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg  113 (172)
T PRK02603         35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIA  113 (172)
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHH
Confidence            446778888899999999999999999976554   24688999999999999999999999999875 66777888889


Q ss_pred             HHHHhcCC--------------HHHHHHHHHHHHHCCCCC
Q 045674          609 NALRKAGN--------------ADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       609 ~~~~~~g~--------------~~~A~~~~~~~~~~~~~~  634 (650)
                      .++...|+              +++|.+.++++++.++..
T Consensus       114 ~~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~~p~~  153 (172)
T PRK02603        114 VIYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRLAPNN  153 (172)
T ss_pred             HHHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhhCchh
Confidence            99988887              577888888888877664

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=98.15  E-value=0.00015  Score=65.76  Aligned_cols=117  Identities=9%  Similarity=-0.038  Sum_probs=95.1

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHH
Q 045674          518 KLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR---IKEACKLADGIVD  594 (650)
Q Consensus       518 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~  594 (650)
                      .-++.-+..++. |...|..|+..|...|+.+.|..-|.++.+..+++++.+..+++++....+   ..++.+++++++.
T Consensus       143 a~Le~~L~~nP~-d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~  221 (287)
T COG4235         143 ARLETHLQQNPG-DAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALA  221 (287)
T ss_pred             HHHHHHHHhCCC-CchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHh
Confidence            333444455555 888899999999999999999999999999888889988888888876543   6778899999998


Q ss_pred             cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          595 REREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       595 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      .+ +.|..+...|+..++..|++.+|...|+.|++..+..+.
T Consensus       222 ~D-~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~~  262 (287)
T COG4235         222 LD-PANIRALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADDP  262 (287)
T ss_pred             cC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCCc
Confidence            87 778888888888999999999999999999988776443

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=98.14  E-value=1.1e-05  Score=56.69  Aligned_cols=62  Identities=16%  Similarity=0.160  Sum_probs=56.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          571 DMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .++..+...|++++|++.|+++++.. |.+..++..++.++...|++++|+..++++++..|.
T Consensus         2 ~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~   63 (65)
T PF13432_consen    2 ALARALYQQGDYDEAIAAFEQALKQD-PDNPEAWYLLGRILYQQGRYDEALAYYERALELDPD   63 (65)
T ss_dssp             HHHHHHHHCTHHHHHHHHHHHHHCCS-TTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             hHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence            46788999999999999999999987 778899999999999999999999999999998765

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=98.13  E-value=5.8e-05  Score=65.29  Aligned_cols=113  Identities=10%  Similarity=0.016  Sum_probs=83.7

Q ss_pred             HHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHH
Q 045674          513 NEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKL  588 (650)
Q Consensus       513 ~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~  588 (650)
                      +..+...+..+.+. +-.-....+..++..+...|++++|...+++++...+.   ...++..++.++...|++++|++.
T Consensus        15 ~~~~~~~l~~~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~   94 (168)
T CHL00033         15 FTIVADILLRILPTTSGEKEAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEY   94 (168)
T ss_pred             cccchhhhhHhccCCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHH
Confidence            44455555555322 22223456677888888999999999999999877554   345889999999999999999999


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHH-------hcCCHHHHHHHHHH
Q 045674          589 ADGIVDREREIPGKIRTALINALR-------KAGNADLAIKLMHS  626 (650)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~~~A~~~~~~  626 (650)
                      ++++++.. +.....+..++.++.       ..|++++|...+++
T Consensus        95 ~~~Al~~~-~~~~~~~~~la~i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033         95 YFQALERN-PFLPQALNNMAVICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHHHhC-cCcHHHHHHHHHHHHHhhHHHHHcccHHHHHHHHHH
Confidence            99999875 556777777787777       78887755444443

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=98.13  E-value=1.3e-05  Score=57.31  Aligned_cols=66  Identities=14%  Similarity=0.104  Sum_probs=58.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcC
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG-RIKEACKLADGIVDRE  596 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~  596 (650)
                      +...|..++..+...|++++|+..|+++++.++.+..++..++.++...| ++++|++.++++++.+
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~   68 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLD   68 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcC
Confidence            46678888889999999999999999999998888999999999999999 7999999999988764

...

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=98.12  E-value=7.7e-05  Score=68.65  Aligned_cols=93  Identities=11%  Similarity=-0.036  Sum_probs=61.9

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCC
Q 045674          543 CLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTALINALRKAGN  616 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~  616 (650)
                      .+.|++++|...|+.+++..|.+   +.++..++.+|...|++++|...|+++++.. |.   ...++..++.++...|+
T Consensus       154 ~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~y-P~s~~~~dAl~klg~~~~~~g~  232 (263)
T PRK10803        154 QDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNY-PKSPKAADAMFKVGVIMQDKGD  232 (263)
T ss_pred             HhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhHHHHHHHHHHHHcCC
Confidence            45577777777777777766663   4566677777777777777777777777542 22   24555556666777777


Q ss_pred             HHHHHHHHHHHHHCCCCChh
Q 045674          617 ADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       617 ~~~A~~~~~~~~~~~~~~~~  636 (650)
                      +++|+..|+++++..|....
T Consensus       233 ~~~A~~~~~~vi~~yP~s~~  252 (263)
T PRK10803        233 TAKAKAVYQQVIKKYPGTDG  252 (263)
T ss_pred             HHHHHHHHHHHHHHCcCCHH
Confidence            77777777777776665443

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.10  E-value=0.00011  Score=58.13  Aligned_cols=90  Identities=19%  Similarity=0.206  Sum_probs=39.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHH
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTALINAL  611 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~  611 (650)
                      +++++-..|+.++|+.+|+++...|...   ...+..++..+...|++++|..++++..... +.   +......++.++
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~-p~~~~~~~l~~f~Al~L   85 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF-PDDELNAALRVFLALAL   85 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCccccHHHHHHHHHHH
Confidence            3444444444445555554444444331   2334444444445555555555554444331 11   222223333444


Q ss_pred             HhcCCHHHHHHHHHHHH
Q 045674          612 RKAGNADLAIKLMHSKI  628 (650)
Q Consensus       612 ~~~g~~~~A~~~~~~~~  628 (650)
                      ...|+.++|++.+-..+
T Consensus        86 ~~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   86 YNLGRPKEALEWLLEAL  102 (120)
T ss_pred             HHCCCHHHHHHHHHHHH
Confidence            44455555544444433

>PRK15331 chaperone protein SicA; Provisional

Probab=98.10  E-value=0.00014  Score=59.91  Aligned_cols=86  Identities=10%  Similarity=0.025  Sum_probs=42.0

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674          508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      ...|++++|..+|.-+.-.++- +...+..|+.++-..+++++|+..|..+...++.|+......+.|+...|+.++|+.
T Consensus        48 y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~~A~~  126 (165)
T PRK15331         48 YNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAAKARQ  126 (165)
T ss_pred             HHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHHHHHH
Confidence            3445555555555544443322 334444444444455555555555555544444444444555555555555555555


Q ss_pred             HHHHHHH
Q 045674          588 LADGIVD  594 (650)
Q Consensus       588 ~~~~~~~  594 (650)
                      .|+.+++
T Consensus       127 ~f~~a~~  133 (165)
T PRK15331        127 CFELVNE  133 (165)
T ss_pred             HHHHHHh
Confidence            5555443

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=98.06  E-value=0.00017  Score=67.89  Aligned_cols=133  Identities=17%  Similarity=0.076  Sum_probs=72.6

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL-SGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      +|..++...-+.+..+.|..+|.++.+.+ ..+...|...+..-.+ .++.+.|.++|+..++..+.+...|...+..+.
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~   81 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDFLI   81 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence            45555555555555666666666665332 2234444444444333 344444666666666665556666666666666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          578 KTGRIKEACKLADGIVDREREIPG---KIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ..|+.+.|..+|++++.. ++.+.   .+|...+..-.+.|+.+.+.++.+++.+.-+.
T Consensus        82 ~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~  139 (280)
T PF05843_consen   82 KLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPE  139 (280)
T ss_dssp             HTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTT
T ss_pred             HhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhh
Confidence            666666666666666654 12222   36666666666666666666666666665333

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=98.04  E-value=0.00027  Score=55.87  Aligned_cols=91  Identities=21%  Similarity=0.137  Sum_probs=66.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHH
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLC  577 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~  577 (650)
                      +..++-..|+.++|+.+|++.+..|+...  ...+..++..+...|++++|..++++.....|.   +..+...++.++.
T Consensus         7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~   86 (120)
T PF12688_consen    7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY   86 (120)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence            44556677888888888888887776643  345667777788888888888888888876565   4555555667778


Q ss_pred             HcCCHHHHHHHHHHHH
Q 045674          578 KTGRIKEACKLADGIV  593 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~  593 (650)
                      ..|+.++|++.+-..+
T Consensus        87 ~~gr~~eAl~~~l~~l  102 (120)
T PF12688_consen   87 NLGRPKEALEWLLEAL  102 (120)
T ss_pred             HCCCHHHHHHHHHHHH
Confidence            8888888888776665

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=98.04  E-value=0.0019  Score=59.10  Aligned_cols=177  Identities=16%  Similarity=0.096  Sum_probs=94.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCY---NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK  509 (650)
Q Consensus       433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  509 (650)
                      .+..+...|++++|.+.|+.+.... |.+....   ..++.+|.+.+++++|...+++.++..+.....-+...+.+.+.
T Consensus        38 ~A~~~~~~g~y~~Ai~~f~~l~~~y-P~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~  116 (243)
T PRK10866         38 TAQQKLQDGNWKQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTN  116 (243)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhh
Confidence            4444555666666666666666642 2222222   34555566666666666666666665433222222222222211


Q ss_pred             --c---------------CC---HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHH
Q 045674          510 --E---------------HR---NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAF  569 (650)
Q Consensus       510 --~---------------~~---~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  569 (650)
                        .               .+   ..+|+..|+.+++.-  |+.             .-..+|...+..+.+.   -...-
T Consensus       117 ~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~y--P~S-------------~ya~~A~~rl~~l~~~---la~~e  178 (243)
T PRK10866        117 MALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGY--PNS-------------QYTTDATKRLVFLKDR---LAKYE  178 (243)
T ss_pred             hhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHHC--cCC-------------hhHHHHHHHHHHHHHH---HHHHH
Confidence              1               01   123444455554431  221             1223333333333221   11222


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          570 EDMITCLCKTGRIKEACKLADGIVDRE--REIPGKIRTALINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                      ..++..|.+.|.+..|+.-++.+++.-  .+...+++..++.+|.+.|..++|.++...+.
T Consensus       179 ~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        179 LSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            356777888888888888888888752  11235567778888888888888888776654

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=98.04  E-value=1.6e-05  Score=56.65  Aligned_cols=54  Identities=19%  Similarity=0.261  Sum_probs=40.2

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          543 CLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ...|++++|+++|+++....|.+..++..++.+|.+.|++++|.++++++....
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~   55 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD   55 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred             hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            456777777777777777777777777777777777777777777777777664

...

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=98.02  E-value=0.0013  Score=62.24  Aligned_cols=94  Identities=18%  Similarity=0.158  Sum_probs=49.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----cHHH
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGIT-----PTA-ASFRALSIGLCLSGKVARACKILDELAPKGII-----PETA  568 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~  568 (650)
                      +..++..+.+.|++++|.++|+++......     .+. ..+...+-++...|+...|.+.+++.....|.     ....
T Consensus       158 ~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~  237 (282)
T PF14938_consen  158 LLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKF  237 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHH
Confidence            344455566677777777777766643221     111 12233344555667777777777777765442     2334


Q ss_pred             HHHHHHHHHH--cCCHHHHHHHHHHHH
Q 045674          569 FEDMITCLCK--TGRIKEACKLADGIV  593 (650)
Q Consensus       569 ~~~l~~~~~~--~g~~~~A~~~~~~~~  593 (650)
                      ...|+.++-.  ...+.+|+.-|+.+.
T Consensus       238 ~~~l~~A~~~~D~e~f~~av~~~d~~~  264 (282)
T PF14938_consen  238 LEDLLEAYEEGDVEAFTEAVAEYDSIS  264 (282)
T ss_dssp             HHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence            4555555543  234666666666554

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.98  E-value=0.018  Score=55.11  Aligned_cols=84  Identities=13%  Similarity=0.130  Sum_probs=65.1

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF  222 (650)
Q Consensus       143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (650)
                      .|.+.-+|..++.-|..+|..++.+++++++..- ++.-..+|..-+.+-....++.....+|.++....  .+...|..
T Consensus        38 NPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~--l~ldLW~l  114 (660)
T COG5107          38 NPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKS--LNLDLWML  114 (660)
T ss_pred             CchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhh--ccHhHHHH
Confidence            4668889999999999999999999999998753 45556778888877777788889999999988763  35666666


Q ss_pred             HHHHHHh
Q 045674          223 LMNGLVN  229 (650)
Q Consensus       223 ll~~~~~  229 (650)
                      .+....+
T Consensus       115 Yl~YIRr  121 (660)
T COG5107         115 YLEYIRR  121 (660)
T ss_pred             HHHHHHh
Confidence            6655443

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.98  E-value=0.00085  Score=68.57  Aligned_cols=138  Identities=14%  Similarity=0.054  Sum_probs=63.6

Q ss_pred             CCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--------CHHHHHHHHHHHHH
Q 045674          424 AVNAMFYSSLIDGLGKA-----GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG--------KLDEALALFKRMED  490 (650)
Q Consensus       424 ~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~~~~A~~~~~~~~~  490 (650)
                      ..+...|...+.+....     ++.+.|..+|+++++.. |.....+..+..+|....        ++..+.+..++...
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld-P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE-PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            33555555555543322     12556666666666654 334444444433332211        11222222222222


Q ss_pred             c-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          491 E-GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       491 ~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      . ....+...|..+.......|++++|...++++++.+  |+...|..++..+...|+.++|.+.++++...+|.
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~  485 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPG  485 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence            1 011233444444444444555555555555555543  34445555555555555555555555555555554

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.97  E-value=0.00013  Score=68.06  Aligned_cols=132  Identities=13%  Similarity=0.069  Sum_probs=80.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH----HCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cC-CCCCHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCR----ANGVA-VNAMFYSSLIDGLGKAGRVDEAEELFEEMVE----KG-CPRDSY  463 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~-~~~~~~  463 (650)
                      .|..+...|.-.|+++.|+...+.-+    +.|-. .....+..+.+++.-.|+++.|.+.|+....    .| -.....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            45555566666777877776654322    22211 1234566677777777888888777765443    22 123345


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          464 CYNVLIDALAKCGKLDEALALFKRMEDE-----GCDQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      ..+.|.+.|.-..++++|+..+.+-+..     ...-....+..|..+|...|..++|+.+.+..++
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            5667777777777777777776654321     1112455677777777777888887777666553

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.93  E-value=0.0012  Score=62.54  Aligned_cols=26  Identities=15%  Similarity=0.293  Sum_probs=12.0

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          569 FEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       569 ~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      +..++..+.+.|++++|+++|++...
T Consensus       158 ~~~~A~l~~~l~~y~~A~~~~e~~~~  183 (282)
T PF14938_consen  158 LLKAADLYARLGRYEEAIEIYEEVAK  183 (282)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            34444444555555555555544443

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=97.92  E-value=0.0087  Score=49.92  Aligned_cols=134  Identities=17%  Similarity=0.099  Sum_probs=86.8

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHH
Q 045674          459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASFRA  537 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~  537 (650)
                      -|+...-..|...+.+.|++.+|...|++...--...|....-.+..+....+++.+|...++++-+..+. -++.....
T Consensus        86 ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll  165 (251)
T COG4700          86 APTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLL  165 (251)
T ss_pred             chhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHH
Confidence            35666666777777777777777777777766444456666667777777777777777777777664321 12233445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      +++.+...|++++|..-|+.+....|. .......+..+.+.|+.++|..-+..+.
T Consensus       166 ~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~  220 (251)
T COG4700         166 FARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVV  220 (251)
T ss_pred             HHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            667777778887787777777776443 3344445566677777666655444443

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.91  E-value=0.0038  Score=57.20  Aligned_cols=173  Identities=12%  Similarity=0.007  Sum_probs=97.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHc
Q 045674          401 GLCKNERLEEAMQYFEFCRANGVAVNAM--FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---SYCYNVLIDALAKC  475 (650)
Q Consensus       401 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  475 (650)
                      .+...|++++|.+.|+.+....+.....  ....++.++.+.+++++|...+++.++.. |.+   ..++..++.++...
T Consensus        41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~-P~~~~~~~a~Y~~g~~~~~~  119 (243)
T PRK10866         41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVLYMRGLTNMAL  119 (243)
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-cCCCchHHHHHHHHHhhhhc
Confidence            3445566666666666655544332111  11234455566666666666666666542 111   11222222221111


Q ss_pred             C---------------C---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          476 G---------------K---LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA  537 (650)
Q Consensus       476 g---------------~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  537 (650)
                      +               +   ..+|+..|+++++.-+  +.             .-..+|...+..+...    -...-..
T Consensus       120 ~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~yP--~S-------------~ya~~A~~rl~~l~~~----la~~e~~  180 (243)
T PRK10866        120 DDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRGYP--NS-------------QYTTDATKRLVFLKDR----LAKYELS  180 (243)
T ss_pred             chhhhhhccCCCccccCHHHHHHHHHHHHHHHHHCc--CC-------------hhHHHHHHHHHHHHHH----HHHHHHH
Confidence            1               1   2345566666666532  22             2234444433333221    0111125


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      ++..|.+.|++..|..-++.+++..|.   ..+++..++.+|...|..++|.++...+.
T Consensus       181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            677789999999999999999988776   56788889999999999999998877654

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.89  E-value=0.023  Score=53.34  Aligned_cols=146  Identities=10%  Similarity=0.025  Sum_probs=94.2

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH-HH
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTY-TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC-KI  554 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~-~~  554 (650)
                      +...|...-.+..+.  .|+..-- ..-..++.+.|+..++-.+++.+-+..+.|+...    ...+.+.|+..... +-
T Consensus       244 dp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~----lY~~ar~gdta~dRlkR  317 (531)
T COG3898         244 DPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL----LYVRARSGDTALDRLKR  317 (531)
T ss_pred             ChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH----HHHHhcCCCcHHHHHHH
Confidence            345555555555554  3333222 2334567788888888888888887755555321    22234555432221 22


Q ss_pred             HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC
Q 045674          555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR-KAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~  630 (650)
                      ..++....+.+.+....++++-...|++..|..--+.+...  .|...+|..+++.-. ..|+-.+++.++-+.++-
T Consensus       318 a~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         318 AKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            33334455667788888888888889998888888877754  577777877777754 448999999998888864

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.87  E-value=0.029  Score=56.69  Aligned_cols=204  Identities=12%  Similarity=0.069  Sum_probs=123.8

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHH----------HHcCChhHHHHHHHHHHhCCC
Q 045674          214 EPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY----------CKVGKTQKAMEKFRAMEARNV  283 (650)
Q Consensus       214 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----------~~~g~~~~A~~~~~~~~~~~~  283 (650)
                      .|....|..+.......-.++.|+..|-+...-   +.+...-.|-...          .--|++++|.++|-++-.++ 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence            567788888888777777778888777665531   2222211111111          11378888888887775442 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHH
Q 045674          284 QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEK-GIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTA  362 (650)
Q Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  362 (650)
                              ..+..+.+.|++-.+.++++.--.. ....-...++.+...+.....|++|.+.+..-...         ..
T Consensus       765 --------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~---------e~  827 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT---------EN  827 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch---------Hh
Confidence                    2456667778887776665431110 00111356777888888888888888877653321         23


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 045674          363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR  442 (650)
Q Consensus       363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  442 (650)
                      .+.++.+..++++-..+-..+.+     +...+-.+..++...|.-++|.+.+-+.-.  ++       ..+..|...++
T Consensus       828 ~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~s~--pk-------aAv~tCv~LnQ  893 (1189)
T KOG2041|consen  828 QIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRRSL--PK-------AAVHTCVELNQ  893 (1189)
T ss_pred             HHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhccC--cH-------HHHHHHHHHHH
Confidence            56666676667666655555442     455667777888888888888777643211  11       34455677777


Q ss_pred             HHHHHHHHHH
Q 045674          443 VDEAEELFEE  452 (650)
Q Consensus       443 ~~~A~~~~~~  452 (650)
                      +.+|.++-+.
T Consensus       894 W~~avelaq~  903 (1189)
T KOG2041|consen  894 WGEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHHh
Confidence            7777766554

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=97.85  E-value=0.00054  Score=63.15  Aligned_cols=98  Identities=13%  Similarity=0.081  Sum_probs=75.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPT--AASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMI  573 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~  573 (650)
                      .|......+.+.|++++|+..|+.+++..+...  ...+..++.+|...|++++|...|+.+++..|.   .++++..++
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444434567888888888888887644321  356778888889999999999999999877665   567777788


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcC
Q 045674          574 TCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .++...|+.++|.++|+++++..
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~y  247 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKKY  247 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHC
Confidence            88889999999999999988764

>PRK15331 chaperone protein SicA; Provisional

Probab=97.85  E-value=0.0016  Score=53.73  Aligned_cols=91  Identities=9%  Similarity=-0.083  Sum_probs=61.9

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA  617 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  617 (650)
                      .+.-+...|++++|..+|.-+.-.++.+...|..|+.++-..+++++|+..|..+...+ ..|+......+.++...|+.
T Consensus        43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~  121 (165)
T PRK15331         43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKA  121 (165)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCH
Confidence            34445567777777777777776666666667777777777777777777777666555 45555566667777777777


Q ss_pred             HHHHHHHHHHHH
Q 045674          618 DLAIKLMHSKIG  629 (650)
Q Consensus       618 ~~A~~~~~~~~~  629 (650)
                      +.|+..|+.+++
T Consensus       122 ~~A~~~f~~a~~  133 (165)
T PRK15331        122 AKARQCFELVNE  133 (165)
T ss_pred             HHHHHHHHHHHh
Confidence            777777777766

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.83  E-value=0.0031  Score=56.26  Aligned_cols=51  Identities=18%  Similarity=0.060  Sum_probs=33.7

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHH
Q 045674          570 EDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      ..++..|.+.|.+..|..-++.+++.- |..   ..++..++.+|.+.|..+.|.
T Consensus       145 ~~ia~~Y~~~~~y~aA~~r~~~v~~~y-p~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  145 LYIARFYYKRGKYKAAIIRFQYVIENY-PDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHHHHCTT-HHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHC-CCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            346777788888888888888887763 332   345566777888888777544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.82  E-value=0.00066  Score=60.85  Aligned_cols=100  Identities=19%  Similarity=0.095  Sum_probs=58.7

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcC
Q 045674          542 LCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREI---PGKIRTALINALRKAG  615 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g  615 (650)
                      +.+.|++.+|..-|...++..|.   .+.++.-|++++...|++++|..+|..+.+.. +.   -++.+..|+.+..+.|
T Consensus       151 ~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~-P~s~KApdallKlg~~~~~l~  229 (262)
T COG1729         151 LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDY-PKSPKAPDALLKLGVSLGRLG  229 (262)
T ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhC-CCCCCChHHHHHHHHHHHHhc
Confidence            44556666666666666666555   34555556666666666666666666665542 21   2455556666666666


Q ss_pred             CHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          616 NADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       616 ~~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      +.++|+..|+++++.-|..+......+
T Consensus       230 ~~d~A~atl~qv~k~YP~t~aA~~Ak~  256 (262)
T COG1729         230 NTDEACATLQQVIKRYPGTDAAKLAKV  256 (262)
T ss_pred             CHHHHHHHHHHHHHHCCCCHHHHHHHH
Confidence            666666666666666665554444443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.82  E-value=3.7e-05  Score=46.01  Aligned_cols=33  Identities=48%  Similarity=0.985  Sum_probs=22.2

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC
Q 045674          254 TYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD  286 (650)
Q Consensus       254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  286 (650)
                      +||.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            566666666666666666666666666666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.80  E-value=0.00013  Score=52.66  Aligned_cols=55  Identities=15%  Similarity=0.120  Sum_probs=29.3

Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .|.+.+++++|.++++.++..+|.+...+...+.++...|++++|.+.++++++.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            3445555555555555555555555555555555555555555555555555544

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.78  E-value=0.058  Score=54.63  Aligned_cols=203  Identities=11%  Similarity=0.081  Sum_probs=121.5

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH----------HHHHHcCCCHHHHHHHHHHHHHCCC
Q 045674          144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSL----------IKSFGGLGMVEELLWVWRSMKENGI  213 (650)
Q Consensus       144 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l----------~~~~~~~g~~~~a~~~~~~~~~~~~  213 (650)
                      .|.+..|..++......-.++.|...|-+...-   +.+.....|          ...-+--|++++|.++|-++-.++ 
T Consensus       689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY---~Gik~vkrl~~i~s~~~q~aei~~~~g~feeaek~yld~drrD-  764 (1189)
T KOG2041|consen  689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDY---AGIKLVKRLRTIHSKEQQRAEISAFYGEFEEAEKLYLDADRRD-  764 (1189)
T ss_pred             CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccc---cchhHHHHhhhhhhHHHHhHhHhhhhcchhHhhhhhhccchhh-
Confidence            345677887877777777777777777665432   111111111          111122477888888877765542 


Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674          214 EPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD----VVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT  289 (650)
Q Consensus       214 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  289 (650)
                              .-+....+.|++-...++++.--   -..|    ..+|+.+...+.....+++|.+.|..-..      .  
T Consensus       765 --------LAielr~klgDwfrV~qL~r~g~---~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~------~--  825 (1189)
T KOG2041|consen  765 --------LAIELRKKLGDWFRVYQLIRNGG---SDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD------T--  825 (1189)
T ss_pred             --------hhHHHHHhhhhHHHHHHHHHccC---CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------h--
Confidence                    12344556676665555554321   1111    45678888888888888888888765421      1  


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674          290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK  369 (650)
Q Consensus       290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (650)
                       ...+.++.+..++++-+.+...+     +.+....-.+..++.+.|..++|.+.|-+...    |.     .-+..|..
T Consensus       826 -e~~~ecly~le~f~~LE~la~~L-----pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----pk-----aAv~tCv~  890 (1189)
T KOG2041|consen  826 -ENQIECLYRLELFGELEVLARTL-----PEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----PK-----AAVHTCVE  890 (1189)
T ss_pred             -HhHHHHHHHHHhhhhHHHHHHhc-----CcccchHHHHHHHHHhhchHHHHHHHHHhccC----cH-----HHHHHHHH
Confidence             23456666666666655554443     33556677788888888888888877643321    12     23456777


Q ss_pred             cCCHHHHHHHHHHHH
Q 045674          370 LGSMNEAINIFERMK  384 (650)
Q Consensus       370 ~~~~~~A~~~~~~~~  384 (650)
                      .+++.+|.++-++..
T Consensus       891 LnQW~~avelaq~~~  905 (1189)
T KOG2041|consen  891 LNQWGEAVELAQRFQ  905 (1189)
T ss_pred             HHHHHHHHHHHHhcc
Confidence            778888887766543

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=97.77  E-value=0.033  Score=51.53  Aligned_cols=203  Identities=21%  Similarity=0.181  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 045674          428 MFYSSLIDGLGKAGRVDEAEELFEEMVEK-GCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN-  505 (650)
Q Consensus       428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~-  505 (650)
                      ..+......+...+++..+...+...... ........+......+...+++..+...+.........+ ......... 
T Consensus        60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~  138 (291)
T COG0457          60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALG  138 (291)
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHH
Confidence            34444555555555555555555555431 123344445555555555555666666666555533222 111222222 


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGI--TPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRI  582 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~  582 (650)
                      .+...|++++|...+.++.....  ......+......+...++.++|...+..+....+. ....+..++..+...+++
T Consensus       139 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  218 (291)
T COG0457         139 ALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKY  218 (291)
T ss_pred             HHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccH
Confidence            45566666666666666644211  112223333333345566666666666666666555 456666666666666666


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      ++|...+..+.... +.....+..+...+...|.++++...+.+.++..+
T Consensus       219 ~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  267 (291)
T COG0457         219 EEALEYYEKALELD-PDNAEALYNLALLLLELGRYEEALEALEKALELDP  267 (291)
T ss_pred             HHHHHHHHHHHhhC-cccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence            66666666666543 22234444445555555566666666666666544

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.75  E-value=0.00077  Score=63.47  Aligned_cols=130  Identities=9%  Similarity=0.025  Sum_probs=89.3

Q ss_pred             HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          149 CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGG-LGMVEELLWVWRSMKENGIEPSLYTYNFLMNGL  227 (650)
Q Consensus       149 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~  227 (650)
                      +|..+++..-+.+..+.|+.+|.++.+.+ ..+..+|...+..-.. .++.+.|..+|+...+. +..+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            56677777777777888888888887543 3345556555555333 56667788888888776 555777778888888


Q ss_pred             HhcCChhHHHHHHHHHhcCCCCCCh---hhHHHHHHHHHHcCChhHHHHHHHHHHhC
Q 045674          228 VNSMFIESSELVFKVMENGKVGPDV---VTYNTMIKGYCKVGKTQKAMEKFRAMEAR  281 (650)
Q Consensus       228 ~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  281 (650)
                      ...++.+.|..+|++.... +.++.   ..|...+..-.+.|+.+.+..+.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            8888888888888888754 22222   37777777777778888888777777664

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.74  E-value=0.0062  Score=54.33  Aligned_cols=167  Identities=18%  Similarity=0.089  Sum_probs=86.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHH-
Q 045674          401 GLCKNERLEEAMQYFEFCRANGVA--VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---YCYNVLIDALAK-  474 (650)
Q Consensus       401 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~-  474 (650)
                      .+...|++++|...|+.+....+.  ........++.++.+.|+++.|...+++.++.. |.+.   ..+..++.++.+ 
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~y-P~~~~~~~A~Y~~g~~~~~~   92 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLY-PNSPKADYALYMLGLSYYKQ   92 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH--TT-TTHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCcchhhHHHHHHHHHHHh
Confidence            344555555555555555544222  112233345555556666666666666655542 1111   122222222111 


Q ss_pred             ----------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674          475 ----------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL  544 (650)
Q Consensus       475 ----------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  544 (650)
                                .+...+|...|+.+++.               |=.+....+|...+..+.+.    =...-..++..|.+
T Consensus        93 ~~~~~~~~~D~~~~~~A~~~~~~li~~---------------yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~  153 (203)
T PF13525_consen   93 IPGILRSDRDQTSTRKAIEEFEELIKR---------------YPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYK  153 (203)
T ss_dssp             HHHHH-TT---HHHHHHHHHHHHHHHH----------------TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHC
T ss_pred             CccchhcccChHHHHHHHHHHHHHHHH---------------CcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence                      12233444444444443               33344445555444444321    01112346777999


Q ss_pred             cCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHH
Q 045674          545 SGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      .|.+..|..-++.+++..|.   ..+++..++.++.+.|..+.|..
T Consensus       154 ~~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~~  199 (203)
T PF13525_consen  154 RGKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAADT  199 (203)
T ss_dssp             TT-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             cccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHHH
Confidence            99999999999999998887   34677888999999998885543

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.72  E-value=0.00013  Score=51.83  Aligned_cols=63  Identities=14%  Similarity=0.130  Sum_probs=40.1

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674          508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED  571 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  571 (650)
                      ...|++++|+++|+++.+..+. +......++.+|.+.|++++|..+++++....+.++..+..
T Consensus         2 l~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~l   64 (68)
T PF14559_consen    2 LKQGDYDEAIELLEKALQRNPD-NPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEYQQL   64 (68)
T ss_dssp             HHTTHHHHHHHHHHHHHHHTTT-SHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHHHHH
T ss_pred             hhccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHHHHH
Confidence            3456777777777777665444 56666667777777777777777777777666655444433

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=97.71  E-value=0.0003  Score=50.82  Aligned_cols=64  Identities=9%  Similarity=0.083  Sum_probs=50.1

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674          573 ITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       573 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  637 (650)
                      ..++...+++++|.++++++++.+ |.+...|...+.++.+.|++++|.+.++++++.++++...
T Consensus         2 ~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~   65 (73)
T PF13371_consen    2 KQIYLQQEDYEEALEVLERALELD-PDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDA   65 (73)
T ss_pred             HHHHHhCCCHHHHHHHHHHHHHhC-cccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHH
Confidence            356778888888888888888876 6677778888888888888888888888888887765443

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=97.71  E-value=8e-05  Score=44.48  Aligned_cols=33  Identities=48%  Similarity=0.856  Sum_probs=23.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPT  531 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~  531 (650)
                      +|+.++.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            466777777777777777777777777666665

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.70  E-value=6.8e-05  Score=44.45  Aligned_cols=32  Identities=31%  Similarity=0.687  Sum_probs=17.3

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 045674          254 TYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP  285 (650)
Q Consensus       254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  285 (650)
                      +|+.++.+|++.|+++.|.++|+.|.+.|++|
T Consensus         3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            45555555555555555555555555555443

>PRK11906 transcriptional regulator; Provisional

Probab=97.70  E-value=0.004  Score=60.50  Aligned_cols=113  Identities=14%  Similarity=0.097  Sum_probs=71.5

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG  591 (650)
Q Consensus       512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  591 (650)
                      ...+|.++.+++++.+.. |......++.+....|+++.|..+|+++...+|....+|...+..+.-.|+.++|.+.+++
T Consensus       319 ~~~~a~~~A~rAveld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~  397 (458)
T PRK11906        319 AAQKALELLDYVSDITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDK  397 (458)
T ss_pred             HHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            345666666667666544 6666666777666667777777777777777777777777777777777777777777777


Q ss_pred             HHHcCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          592 IVDREREIP--GKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       592 ~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      +++.. |-.  ..+....++.|+.+ ..++|+++|-+-
T Consensus       398 alrLs-P~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~  433 (458)
T PRK11906        398 SLQLE-PRRRKAVVIKECVDMYVPN-PLKNNIKLYYKE  433 (458)
T ss_pred             HhccC-chhhHHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence            77654 211  22233334345544 456666665443

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.69  E-value=0.033  Score=49.38  Aligned_cols=133  Identities=13%  Similarity=0.074  Sum_probs=104.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCCCHHHHHHH
Q 045674          464 CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----GITPTAASFRAL  538 (650)
Q Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~p~~~~~~~l  538 (650)
                      +.+.++.++.-.|.+.-....+++.++...+.++.....|+..-...|+.+.|...|++..+.     ++.-+.......
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            456677777778888888889999988877778888888888888999999999999876642     233233333444


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ...+.-++++.+|...+.++...++.++...+.-+-++.-.|+..+|++.++.+++..
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~  316 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQD  316 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence            4556667788889999999998888888888888888888999999999999998764

>PRK11906 transcriptional regulator; Provisional

Probab=97.68  E-value=0.0017  Score=63.07  Aligned_cols=121  Identities=11%  Similarity=0.004  Sum_probs=98.2

Q ss_pred             HHHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHh---------cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          513 NEEALKLWDMMID-KGITPT-AASFRALSIGLCL---------SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       513 ~~~A~~~~~~~~~-~~~~p~-~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      .+.|+.+|.+++. ..++|+ ...|..+++++..         .....+|.+..+++++.++.|+.+...++.+++-.|+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~~Da~a~~~~g~~~~~~~~  353 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITTVDGKILAIMGLITGLSGQ  353 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence            4567777777771 123333 3455555554432         2356788999999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          582 IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      ++.|...|+++...+ |....+|...+..+...|+.++|++.++++++..|..
T Consensus       354 ~~~a~~~f~rA~~L~-Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~  405 (458)
T PRK11906        354 AKVSHILFEQAKIHS-TDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRR  405 (458)
T ss_pred             hhhHHHHHHHHhhcC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchh
Confidence            999999999999987 7778899999999999999999999999999998874

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=97.65  E-value=0.00011  Score=43.48  Aligned_cols=33  Identities=33%  Similarity=0.581  Sum_probs=21.6

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITP  530 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p  530 (650)
                      .+|+.++.+|.+.|+++.|.++|++|.+.|+.|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            356666666666666666666666666666655

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.63  E-value=0.0011  Score=64.81  Aligned_cols=120  Identities=12%  Similarity=0.151  Sum_probs=72.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHH
Q 045674          286 DKITYMTLIQACYLEGDFDSCLSLYHEMDEK--GIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTAL  363 (650)
Q Consensus       286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  363 (650)
                      +......++..+....+.+.+..++..+...  ....-..+..++++.|.+.|..+++..++..=...|+-||..+++.|
T Consensus        65 S~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~L  144 (429)
T PF10037_consen   65 SSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLL  144 (429)
T ss_pred             cHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHH
Confidence            4445555555555555666666666666553  22222344456667777777777777777666666777777777777


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674          364 IDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKN  405 (650)
Q Consensus       364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  405 (650)
                      +..+.+.|++..|.++...|...+...+..|+...+.+|.+-
T Consensus       145 md~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  145 MDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777666666554444555555555554443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.62  E-value=0.026  Score=49.96  Aligned_cols=148  Identities=11%  Similarity=0.052  Sum_probs=110.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      +..++.|++-.       ..+.++++..+...+.+.-....+.+.++..-+.++.....|+..-.+.|+.+.|...|++.
T Consensus       166 ESsv~lW~KRl-------~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~v  238 (366)
T KOG2796|consen  166 ESSIRLWRKRL-------GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDV  238 (366)
T ss_pred             hhHHHHHHHHH-------HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence            45555554432       23455677777788889999999999999876778999999999999999999999999977


Q ss_pred             HHcCCCCCHHHHH-----HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674          489 EDEGCDQTVYTYT-----ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       489 ~~~~~~~~~~~~~-----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      .+..-..+..+.+     .....|...+++.+|...+.+....+.. |....+.-+-++...|+..+|++.++.+....|
T Consensus       239 ek~~~kL~~~q~~~~V~~n~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P  317 (366)
T KOG2796|consen  239 EKVTQKLDGLQGKIMVLMNSAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQDP  317 (366)
T ss_pred             HHHHhhhhccchhHHHHhhhhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            6643222333333     3334556788999999999988876544 666666666666778999999999999998876


Q ss_pred             C
Q 045674          564 I  564 (650)
Q Consensus       564 ~  564 (650)
                      .
T Consensus       318 ~  318 (366)
T KOG2796|consen  318 R  318 (366)
T ss_pred             c
Confidence            5

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=0.0017  Score=61.39  Aligned_cols=145  Identities=15%  Similarity=-0.003  Sum_probs=99.1

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS  545 (650)
Q Consensus       466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  545 (650)
                      ..-++.|.+.|++..|..-|+++... +.            |.+.-+.++......        .-..++..++-++.+.
T Consensus       212 ke~Gn~~fK~gk~~~A~~~Yerav~~-l~------------~~~~~~~ee~~~~~~--------~k~~~~lNlA~c~lKl  270 (397)
T KOG0543|consen  212 KERGNVLFKEGKFKLAKKRYERAVSF-LE------------YRRSFDEEEQKKAEA--------LKLACHLNLAACYLKL  270 (397)
T ss_pred             HHhhhHHHhhchHHHHHHHHHHHHHH-hh------------ccccCCHHHHHHHHH--------HHHHHhhHHHHHHHhh
Confidence            34566677777777777777766542 00            111111122111110        1223456677788899


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH-HHHHHHH
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA-DLAIKLM  624 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~A~~~~  624 (650)
                      +++.+|++.-++++..++.+..++..-+.++...|+++.|+..|+++++.. |.|..+-..++.+-.+..++ +...++|
T Consensus       271 ~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~-P~Nka~~~el~~l~~k~~~~~~kekk~y  349 (397)
T KOG0543|consen  271 KEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLE-PSNKAARAELIKLKQKIREYEEKEKKMY  349 (397)
T ss_pred             hhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999988899999999999999999999999999999886 66666666676665555554 4447888


Q ss_pred             HHHHHCCC
Q 045674          625 HSKIGVGY  632 (650)
Q Consensus       625 ~~~~~~~~  632 (650)
                      ..|..+-.
T Consensus       350 ~~mF~k~~  357 (397)
T KOG0543|consen  350 ANMFAKLA  357 (397)
T ss_pred             HHHhhccc
Confidence            88887633

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=97.59  E-value=0.0016  Score=63.81  Aligned_cols=122  Identities=13%  Similarity=0.136  Sum_probs=80.0

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC--CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHH
Q 045674          214 EPSLYTYNFLMNGLVNSMFIESSELVFKVMENGK--VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYM  291 (650)
Q Consensus       214 ~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  291 (650)
                      ..+......+++.+....+++.+..++-+.....  ...-..|..++++.|.+.|..++++++++.=...|+-||..+++
T Consensus        63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n  142 (429)
T PF10037_consen   63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN  142 (429)
T ss_pred             CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence            3355556666666666666777777776665431  11223445577777777777777777777777777777777777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          292 TLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV  335 (650)
Q Consensus       292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  335 (650)
                      .|+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus       143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            77777777777777777777776665554555554444444443

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=97.59  E-value=0.069  Score=50.31  Aligned_cols=307  Identities=18%  Similarity=0.138  Sum_probs=165.9

Q ss_pred             ChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH--HcCCCHHHH
Q 045674          126 RPNVGLRLFTWAARQKKYSHNLECYISLIDCL--ALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSF--GGLGMVEEL  201 (650)
Q Consensus       126 ~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~a  201 (650)
                      .|..+-++|+...+..       -|..+-..+  .-.|+-..|++.-.+..+. +..|...+..|+.+-  .-.|+++.|
T Consensus        68 sP~t~~Ryfr~rKRdr-------gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~A  139 (531)
T COG3898          68 SPYTARRYFRERKRDR-------GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDA  139 (531)
T ss_pred             CcHHHHHHHHHHHhhh-------HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHH
Confidence            3556666666554432       345554444  4557777888777665432 123444444444433  346888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHH----HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHH
Q 045674          202 LWVWRSMKENGIEPSLYTYNF----LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRA  277 (650)
Q Consensus       202 ~~~~~~~~~~~~~~~~~~~~~----ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  277 (650)
                      .+-|+.|..     |..+-..    |.-...+.|..+.|...-+..-..- +--...+...+...|..|+++.|+++++.
T Consensus       140 r~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~  213 (531)
T COG3898         140 RKKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDA  213 (531)
T ss_pred             HHHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHH
Confidence            888888876     2233222    2222346778888877777766442 22356777888888888888888888876


Q ss_pred             HHhCC-CCCCHH--HHHHHHHHHH---hcCCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHhcCChHHHHHHHHHHHH
Q 045674          278 MEARN-VQPDKI--TYMTLIQACY---LEGDFDSCLSLYHEMDEKGIEIP-SHAYNLVIGGLCKVGKCIEGHAIFESMIR  350 (650)
Q Consensus       278 ~~~~~-~~~~~~--~~~~l~~~~~---~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  350 (650)
                      -.+.. +.++..  .-..|+.+-.   -..+...|...-.+..+.  .|+ ...-..-...+.+.|+..++-.+++.+-+
T Consensus       214 ~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~KL--~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK  291 (531)
T COG3898         214 QRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANKL--APDLVPAAVVAARALFRDGNLRKGSKILETAWK  291 (531)
T ss_pred             HHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhhc--CCccchHHHHHHHHHHhccchhhhhhHHHHHHh
Confidence            65432 233321  1222332211   123444555544444433  222 12233345666777777777777777777


Q ss_pred             cCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674          351 RGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY-EGVEP-DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM  428 (650)
Q Consensus       351 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  428 (650)
                      ....|++.    ++..+.+.|+.  ++.-+++..+ ..++| +..+...+..+....|++..|..--+.....  .|...
T Consensus       292 ~ePHP~ia----~lY~~ar~gdt--a~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres  363 (531)
T COG3898         292 AEPHPDIA----LLYVRARSGDT--ALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRES  363 (531)
T ss_pred             cCCChHHH----HHHHHhcCCCc--HHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhhh--Cchhh
Confidence            64444432    23334445542  2222222221 01122 3445555566666667766666555544443  34555


Q ss_pred             HHHHHHHHHHH-cCCHHHHHHHHHHHHHc
Q 045674          429 FYSSLIDGLGK-AGRVDEAEELFEEMVEK  456 (650)
Q Consensus       429 ~~~~l~~~~~~-~~~~~~A~~~~~~~~~~  456 (650)
                      .|..|...-.. .||-.++.+.+.+.++.
T Consensus       364 ~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         364 AYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             HHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence            56656555433 36777777776666654

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=97.53  E-value=0.12  Score=51.81  Aligned_cols=186  Identities=13%  Similarity=0.062  Sum_probs=100.0

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA  471 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  471 (650)
                      ..+|...+..-...|+.+.+.-+|+.+.-. +..-...|-..+......|+.+-|..++....+-.++..+.+-..-...
T Consensus       297 l~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f  375 (577)
T KOG1258|consen  297 LKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF  375 (577)
T ss_pred             HHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH
Confidence            456666676677777777777777665432 1112234444455555557777777776666554333333322222222


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHH---HHHHHHHHCCCCC--CHHHHHHHHHH-HHh
Q 045674          472 LAKCGKLDEALALFKRMEDEGCDQTVYTY-TILINGMFKEHRNEEAL---KLWDMMIDKGITP--TAASFRALSIG-LCL  544 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~---~~~~~~~~~~~~p--~~~~~~~l~~~-~~~  544 (650)
                      ....|+++.|..+++.+...-  |+.... ..-+....+.|..+.+.   +++.........+  ....+...++. +.-
T Consensus       376 ~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~~~~i  453 (577)
T KOG1258|consen  376 EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARLRYKI  453 (577)
T ss_pred             HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHHHHHH
Confidence            334567888888887777653  333211 11122334566666665   3333332211111  11112222221 233


Q ss_pred             cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674          545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTG  580 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  580 (650)
                      .++.+.|..++.++.+..+.+...|..++......+
T Consensus       454 ~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  454 REDADLARIILLEANDILPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             hcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence            567788888888888877777777777777666555

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.46  E-value=0.12  Score=49.90  Aligned_cols=61  Identities=10%  Similarity=0.001  Sum_probs=36.1

Q ss_pred             cHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          565 PETAFEDMITC--LCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       565 ~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      +.++.+.|+++  +...|++.++.-+-.=..+.  .|++.++..++-++....+|++|...++.+
T Consensus       459 e~eian~LaDAEyLysqgey~kc~~ys~WL~~i--aPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L  521 (549)
T PF07079_consen  459 EEEIANFLADAEYLYSQGEYHKCYLYSSWLTKI--APSPQAYRLLGLCLMENKRYQEAWEYLQKL  521 (549)
T ss_pred             HHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh--CCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence            34444544433  45667777665554444432  466777777776667777777777766654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.43  E-value=0.00019  Score=41.42  Aligned_cols=29  Identities=48%  Similarity=0.983  Sum_probs=15.7

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 045674          254 TYNTMIKGYCKVGKTQKAMEKFRAMEARN  282 (650)
Q Consensus       254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  282 (650)
                      +|+.++++|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.42  E-value=0.016  Score=57.83  Aligned_cols=37  Identities=35%  Similarity=0.572  Sum_probs=21.7

Q ss_pred             HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          343 AIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER  382 (650)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  382 (650)
                      .-++++.++|-.|+...   ++..++-.|.+.+|-++|.+
T Consensus       621 ~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~  657 (1081)
T KOG1538|consen  621 SELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR  657 (1081)
T ss_pred             HHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH
Confidence            33555666666666542   44555566677777766654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=97.42  E-value=0.0037  Score=48.56  Aligned_cols=90  Identities=16%  Similarity=0.102  Sum_probs=39.3

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG---KIRTALINALRKAGNAD  618 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~  618 (650)
                      +...|+.+.|++.|.+++..-|..+.+|+.-+.++.-.|+.++|++-++++++..-+...   ..|..-+..|...|+.+
T Consensus        53 laE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~dd  132 (175)
T KOG4555|consen   53 LAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGNDD  132 (175)
T ss_pred             HHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCchH
Confidence            334444444444444444444444444444444444444444444444444443211111   11222233344444445


Q ss_pred             HHHHHHHHHHHCC
Q 045674          619 LAIKLMHSKIGVG  631 (650)
Q Consensus       619 ~A~~~~~~~~~~~  631 (650)
                      .|+.-|+.+-+.|
T Consensus       133 ~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  133 AARADFEAAAQLG  145 (175)
T ss_pred             HHHHhHHHHHHhC
Confidence            5544444444443

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=97.41  E-value=0.0039  Score=56.03  Aligned_cols=102  Identities=19%  Similarity=0.223  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGIT--PTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMI  573 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~  573 (650)
                      .|+.-+. +...|++.+|...|...++..+.  -....+..|+.++...|++++|..+|..+.+..|+   -++.+..|+
T Consensus       144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            4655444 45778899999999998876443  13456678899999999999999999999887665   568899999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          574 TCLCKTGRIKEACKLADGIVDREREIPGK  602 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  602 (650)
                      .+..+.|+.++|..+|+++.+.- |....
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~Y-P~t~a  250 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKRY-PGTDA  250 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHC-CCCHH
Confidence            99999999999999999998873 44433

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.40  E-value=0.011  Score=54.84  Aligned_cols=227  Identities=11%  Similarity=0.076  Sum_probs=117.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHH----HHHHCC-CCCCHHHHHHHHHHHHH
Q 045674          367 YAKLGSMNEAINIFERMKYEG--VEPDEVTYGVIISGLCKNERLEEAMQYFE----FCRANG-VAVNAMFYSSLIDGLGK  439 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~~----~~~~~~-~~~~~~~~~~l~~~~~~  439 (650)
                      +....+.++|+..+.+...+-  ..---.++..+..+.++.|.+++++..--    ...+.. -..-...|..+..++.+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445667777777777665430  01112356666677777777777665432    111110 00012334445555555


Q ss_pred             cCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhc
Q 045674          440 AGRVDEAEELFEEMVEK-GCPR---DSYCYNVLIDALAKCGKLDEALALFKRMEDEG-----CDQTVYTYTILINGMFKE  510 (650)
Q Consensus       440 ~~~~~~A~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~  510 (650)
                      ..++.+++.+-..-... |..+   .-.....+..++...+.++++++.|+...+..     .......+..|...|...
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            55555555554444432 1111   11223345556666667777777777665421     112234566666677777


Q ss_pred             CCHHHHHHHHHHHHH----CCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--c----HHHHHHHHHH
Q 045674          511 HRNEEALKLWDMMID----KGITPTAA-----SFRALSIGLCLSGKVARACKILDELAPKGII--P----ETAFEDMITC  575 (650)
Q Consensus       511 ~~~~~A~~~~~~~~~----~~~~p~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~----~~~~~~l~~~  575 (650)
                      .|+++|.-+..++.+    .++..-..     .+..+.-++...|..-+|.+.-+++.+....  |    ......+++.
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            777777766665543    22221111     1223344455666666666666665543221  2    2334456666


Q ss_pred             HHHcCCHHHHHHHHHHHH
Q 045674          576 LCKTGRIKEACKLADGIV  593 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~  593 (650)
                      |...|+.+.|..-|+.+.
T Consensus       256 yR~~gd~e~af~rYe~Am  273 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAM  273 (518)
T ss_pred             HHhcccHhHHHHHHHHHH
Confidence            777777777766666665

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.40  E-value=0.00049  Score=50.42  Aligned_cols=63  Identities=16%  Similarity=0.220  Sum_probs=34.7

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDRE--REIP----GKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .++..++.+|...|++++|++.++++++..  ..++    ..++..++.++...|++++|+++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            345556666666666666666666655330  0111    23455566666666666666666666654

...

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=97.39  E-value=0.0012  Score=62.39  Aligned_cols=76  Identities=17%  Similarity=0.145  Sum_probs=67.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhc
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVK  643 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~  643 (650)
                      .++.+++-++.+.+++.+|++..++.++.+ ++|...+..-+.+|...|+++.|+..|+++++..|.+...-..+++
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~  333 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIK  333 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHH
Confidence            356789999999999999999999999998 8899999999999999999999999999999999987555544443

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.39  E-value=0.0035  Score=47.60  Aligned_cols=78  Identities=24%  Similarity=0.381  Sum_probs=48.4

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHcCC--------CHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          152 SLIDCLALCGDVDRVRLVFNELKEKGF-LMTVSAANSLIKSFGGLG--------MVEELLWVWRSMKENGIEPSLYTYNF  222 (650)
Q Consensus       152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (650)
                      ..+.-+...+++...-.+|+.+++.|+ .|+..+|+.++.+..+..        +.-+++.+|+.|...+++|+..+|+.
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYni  109 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNI  109 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHH
Confidence            344445555777777777777777776 667777777776665442        23345566666666666666666666


Q ss_pred             HHHHHHh
Q 045674          223 LMNGLVN  229 (650)
Q Consensus       223 ll~~~~~  229 (650)
                      ++..+.+
T Consensus       110 vl~~Llk  116 (120)
T PF08579_consen  110 VLGSLLK  116 (120)
T ss_pred             HHHHHHH
Confidence            6665543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=97.38  E-value=0.015  Score=46.92  Aligned_cols=100  Identities=15%  Similarity=0.039  Sum_probs=56.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHH
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTAL  607 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l  607 (650)
                      .+..-+....+.|++++|.+.|+.+....|.   ...+-..++.++.+.|++++|+..+++.++++ |.+   ..++...
T Consensus        12 ~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLh-P~hp~vdYa~Y~~   90 (142)
T PF13512_consen   12 ELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLH-PTHPNVDYAYYMR   90 (142)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCCCccHHHHHH
Confidence            3334444455666666666666666665444   44555566666666666666666666666654 221   1222223


Q ss_pred             HHHHHhcCC---------------HHHHHHHHHHHHHCCCCC
Q 045674          608 INALRKAGN---------------ADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       608 ~~~~~~~g~---------------~~~A~~~~~~~~~~~~~~  634 (650)
                      +-++.....               ...|...|+++++.-|..
T Consensus        91 gL~~~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~~yP~S  132 (142)
T PF13512_consen   91 GLSYYEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVRRYPNS  132 (142)
T ss_pred             HHHHHHHhhhHHhhhcccccCcHHHHHHHHHHHHHHHHCcCC
Confidence            333333333               567777777777766553

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=97.35  E-value=0.0038  Score=47.47  Aligned_cols=43  Identities=26%  Similarity=0.514  Sum_probs=24.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHh
Q 045674          292 TLIQACYLEGDFDSCLSLYHEMDEKGI-EIPSHAYNLVIGGLCK  334 (650)
Q Consensus       292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~  334 (650)
                      ..|..+...+++.....+|+.+++.|+ .|+..+|+.++...++
T Consensus        30 ~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~   73 (120)
T PF08579_consen   30 DNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK   73 (120)
T ss_pred             HHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence            344444555666666666666666665 5555666655555443

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.34  E-value=0.11  Score=46.60  Aligned_cols=53  Identities=17%  Similarity=0.065  Sum_probs=26.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLAD  590 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~  590 (650)
                      +++.|.+.|.+..|..-++.+++..+.   ..+.+..+..+|...|-.++|.+.-+
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~  228 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAK  228 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHH
Confidence            344455555555555555555554333   23444445555555555555554433

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.33  E-value=0.0014  Score=63.42  Aligned_cols=99  Identities=17%  Similarity=0.143  Sum_probs=75.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH---HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPET---AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      +...++.++.+|...|++++|+..|+++++.+|.+.+   +|++++.+|...|++++|++.++++++.+ .+   .|..+
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels-n~---~f~~i  149 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY-NL---KFSTI  149 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc-ch---hHHHH
Confidence            5678899999999999999999999999999998764   59999999999999999999999999863 22   12211


Q ss_pred             HH--HHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          608 IN--ALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       608 ~~--~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ..  .+....+.++..++++.+.+-|..
T Consensus       150 ~~DpdL~plR~~pef~eLlee~rk~G~~  177 (453)
T PLN03098        150 LNDPDLAPFRASPEFKELQEEARKGGED  177 (453)
T ss_pred             HhCcchhhhcccHHHHHHHHHHHHhCCc
Confidence            11  111223445677777777777664

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=97.31  E-value=0.0031  Score=61.18  Aligned_cols=67  Identities=15%  Similarity=0.158  Sum_probs=57.7

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      .+...++.++.+|...|++++|+..|++.++.++....  .+|..++.+|...|+.++|+..++++++.
T Consensus        73 ~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         73 KTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            36788999999999999999999999999986544221  35889999999999999999999999986

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.23  E-value=0.0005  Score=39.56  Aligned_cols=29  Identities=45%  Similarity=0.673  Sum_probs=15.4

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKG  527 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  527 (650)
                      +|+.++.+|++.|++++|.++|++|.+.|
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g   30 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERG   30 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence            45555555555555555555555555443

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.23  E-value=0.089  Score=50.67  Aligned_cols=30  Identities=10%  Similarity=0.126  Sum_probs=22.3

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      -.+..++.+..-.|++++|.+.++++.+..
T Consensus       306 Wd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~  335 (374)
T PF13281_consen  306 WDVATLLEASVLAGDYEKAIQAAEKAFKLK  335 (374)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHhhcC
Confidence            344567777778888888888888888653

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=97.22  E-value=0.0022  Score=46.96  Aligned_cols=62  Identities=15%  Similarity=0.204  Sum_probs=40.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPK----GII---PETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      .++..++.+|...|++++|+.+++++++.    |..   -..++..++.++...|++++|+++++++++
T Consensus         6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~   74 (78)
T PF13424_consen    6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD   74 (78)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            35566666777777777777777766632    222   134566777777777777777777777664

...

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=97.22  E-value=0.084  Score=50.83  Aligned_cols=30  Identities=20%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          604 RTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       604 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +..++.++.-.|++++|.+.++++.+..+.
T Consensus       308 ~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~  337 (374)
T PF13281_consen  308 VATLLEASVLAGDYEKAIQAAEKAFKLKPP  337 (374)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHhhcCCc
Confidence            356888888999999999999999987543

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.22  E-value=0.014  Score=48.91  Aligned_cols=71  Identities=17%  Similarity=0.246  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhhhh
Q 045674          569 FEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSIKR  640 (650)
Q Consensus       569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~  640 (650)
                      ...++..+...|++++|.+++++++..+ |-+...|..++.+|...|+..+|++.|+++..     .|..|+..+..
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            3445555555666666666666666554 44555566666666666666666666555432     35555544443

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=97.22  E-value=0.055  Score=54.28  Aligned_cols=53  Identities=23%  Similarity=0.190  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED  490 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  490 (650)
                      +...+..-+.+...+.-|-++|..|-..         ..+++.....++|++|..+-++..+
T Consensus       749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe  801 (1081)
T KOG1538|consen  749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPE  801 (1081)
T ss_pred             HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCcc
Confidence            3333333344445555566666554332         2345555566666666666655444

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.17  E-value=0.011  Score=49.58  Aligned_cols=110  Identities=20%  Similarity=0.248  Sum_probs=77.7

Q ss_pred             HHHHHHHHH---HHHhcCCHHHHHHHHHHHHHC--CC-CCCH------------------HHHHHHHHHHHhcCCHHHHH
Q 045674          497 VYTYTILIN---GMFKEHRNEEALKLWDMMIDK--GI-TPTA------------------ASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       497 ~~~~~~l~~---~~~~~~~~~~A~~~~~~~~~~--~~-~p~~------------------~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ...|..++.   .....++.+.+...++++...  |. -++.                  .++..++..+...|++++|.
T Consensus         3 ~~~F~~~~~~a~~~~~~~~~~~~~~~~~~al~ly~G~~l~~~~~~~W~~~~r~~l~~~~~~~~~~l~~~~~~~~~~~~a~   82 (146)
T PF03704_consen    3 VDRFEALVREARAAARAGDPEEAIELLEEALALYRGDFLPDLDDEEWVEPERERLRELYLDALERLAEALLEAGDYEEAL   82 (146)
T ss_dssp             HHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHTT--SSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHH
Confidence            444555533   345678999999999999864  32 2221                  12244556677899999999


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHH
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTA  606 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~  606 (650)
                      .+++.++..+|.+...+..++.+|...|+..+|.++|+++.+     .|+.|++.+-..
T Consensus        83 ~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~l  141 (146)
T PF03704_consen   83 RLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRAL  141 (146)
T ss_dssp             HHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHHH
T ss_pred             HHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHHH
Confidence            999999999999999999999999999999999999998753     477787776543

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=97.14  E-value=0.18  Score=45.23  Aligned_cols=63  Identities=17%  Similarity=0.144  Sum_probs=48.3

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          570 EDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      ..++..|.+.|.+-.|..-++.+++. .+..   ...+..+..+|.+.|-.++|.+.-+ +++.++..
T Consensus       171 m~IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~-vl~~N~p~  236 (254)
T COG4105         171 MAIARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAK-VLGANYPD  236 (254)
T ss_pred             HHHHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHH-HHHhcCCC
Confidence            34788899999999999999999987 3433   3466678889999999999987654 44444443

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=97.12  E-value=0.29  Score=47.28  Aligned_cols=132  Identities=15%  Similarity=0.235  Sum_probs=95.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEG-CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS-FRAL  538 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~l  538 (650)
                      -..+|..+++...+..-.+.|.++|-++.+.+ ..+++..+++++.-+ ..|+..-|..+|+--...  -||... ....
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~-~~~d~~ta~~ifelGl~~--f~d~~~y~~ky  472 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYY-ATGDRATAYNIFELGLLK--FPDSTLYKEKY  472 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHH-hcCCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence            34567777777777777888899999888887 457777888888754 468888888888876654  233333 3445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          539 SIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      +..+.+.++-+.|..+|+..++.--.  -..+|..++.--..-|+...|..+=+++.+.
T Consensus       473 l~fLi~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         473 LLFLIRINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            55667788888888888877754222  3677888888888888888888777777665

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.12  E-value=0.0076  Score=50.85  Aligned_cols=93  Identities=17%  Similarity=0.106  Sum_probs=56.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTA----ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT  579 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  579 (650)
                      +.-+...|++++|..-|..+++.-+....    ..|..-+.++.+.++++.|++--.++++.+|....++..-+.+|-+.
T Consensus       102 GN~~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~  181 (271)
T KOG4234|consen  102 GNELFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKM  181 (271)
T ss_pred             HHHhhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhh
Confidence            44456667777777777777664222111    12333344556666777777777777776666666666666666666


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 045674          580 GRIKEACKLADGIVDRE  596 (650)
Q Consensus       580 g~~~~A~~~~~~~~~~~  596 (650)
                      .++++|++-|+++++.+
T Consensus       182 ek~eealeDyKki~E~d  198 (271)
T KOG4234|consen  182 EKYEEALEDYKKILESD  198 (271)
T ss_pred             hhHHHHHHHHHHHHHhC
Confidence            66777777777776654

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=97.07  E-value=0.078  Score=41.64  Aligned_cols=61  Identities=25%  Similarity=0.334  Sum_probs=33.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ....+...|+-++-.+++..+.+.+ .+++..+..++.+|.+.|+..+|-++++++.++|..
T Consensus        92 ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k  152 (161)
T PF09205_consen   92 ALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK  152 (161)
T ss_dssp             HHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence            3445556666666666666665433 566666666666666666666666666666666653

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=97.07  E-value=0.33  Score=47.02  Aligned_cols=452  Identities=16%  Similarity=0.156  Sum_probs=217.8

Q ss_pred             CCCChhHHHHHHHHHHHcCCCCC---CHHHH-HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH--HHHcCC
Q 045674          123 VSKRPNVGLRLFTWAARQKKYSH---NLECY-ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIK--SFGGLG  196 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~~~~~~---~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g  196 (650)
                      ..++..+|.++|..+-......+   ..+++ ..++++|.- ++.+.....+..+.+.. +..  .|..|..  .+.+.|
T Consensus        18 kq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~-~~s--~~l~LF~~L~~Y~~k   93 (549)
T PF07079_consen   18 KQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF-GKS--AYLPLFKALVAYKQK   93 (549)
T ss_pred             HHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc-CCc--hHHHHHHHHHHHHhh
Confidence            35677777787777654421111   11222 345555543 45666666666665542 222  2333333  345677


Q ss_pred             CHHHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCC----CCCChhhHHHH
Q 045674          197 MVEELLWVWRSMKEN--GIEP------------SLYTYNFLMNGLVNSMFIESSELVFKVMENGK----VGPDVVTYNTM  258 (650)
Q Consensus       197 ~~~~a~~~~~~~~~~--~~~~------------~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~~~~l  258 (650)
                      .+++|++.+......  +..+            |-..-+..+.++...|++.+++.+++++...-    ..-+..+|+.+
T Consensus        94 ~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~  173 (549)
T PF07079_consen   94 EYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRA  173 (549)
T ss_pred             hHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHH
Confidence            888888777766554  2111            11122445566777788888877777765432    23566777765


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          259 IKGYCKVGKTQKAMEKFRAMEAR---NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKV  335 (650)
Q Consensus       259 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  335 (650)
                      +-.+.+        .+|-++.+.   ++-|+   |.-++..|.+.=      ..++...-..+.|.......++....-.
T Consensus       174 vlmlsr--------SYfLEl~e~~s~dl~pd---yYemilfY~kki------~~~d~~~Y~k~~peeeL~s~imqhlfi~  236 (549)
T PF07079_consen  174 VLMLSR--------SYFLELKESMSSDLYPD---YYEMILFYLKKI------HAFDQRPYEKFIPEEELFSTIMQHLFIV  236 (549)
T ss_pred             HHHHhH--------HHHHHHHHhcccccChH---HHHHHHHHHHHH------HHHhhchHHhhCcHHHHHHHHHHHHHhC
Confidence            544433        222222221   11221   222222222110      0000000001122222222222222211


Q ss_pred             --CChHHHHHHHHHHHHcCCCcCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCCH
Q 045674          336 --GKCIEGHAIFESMIRRGCQPNVA-IYTALIDSYAKLGSMNEAINIFERMKYEGVEP----DEVTYGVIISGLCKNERL  408 (650)
Q Consensus       336 --g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~  408 (650)
                        ....--.++++.....-+.|+-. +...|...+..  +.+++..+-+.+....+.+    =..++..++....+.++.
T Consensus       237 p~e~l~~~mq~l~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T  314 (549)
T PF07079_consen  237 PKERLPPLMQILENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQT  314 (549)
T ss_pred             CHhhccHHHHHHHHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhH
Confidence              11122223333333333334322 11222222322  3444444433332221110    134677777778888888


Q ss_pred             HHHHHHHHHHHHCCCCCCHHH-----HHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHH---HHHHHc
Q 045674          409 EEAMQYFEFCRANGVAVNAMF-----YSSLIDGLGK----AGRVDEAEELFEEMVEKGCPRDS-YCYNVLI---DALAKC  475 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~-----~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~-~~~~~l~---~~~~~~  475 (650)
                      ..|.+.+..+...++......     -..+-+..+.    .-+...=+.+|++....+  .|. .....|+   .-+-+.
T Consensus       315 ~~a~q~l~lL~~ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~D--iDrqQLvh~L~~~Ak~lW~~  392 (549)
T PF07079_consen  315 EEAKQYLALLKILDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYD--IDRQQLVHYLVFGAKHLWEI  392 (549)
T ss_pred             HHHHHHHHHHHhcCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhc--ccHHHHHHHHHHHHHHHHhc
Confidence            888888777665543322110     0111222221    112233344455544433  222 1222222   223445


Q ss_pred             CC-HHHHHHHHHHHHHcCCCCCHHHHHHHHH----HHH---hcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHH--H
Q 045674          476 GK-LDEALALFKRMEDEGCDQTVYTYTILIN----GMF---KEHRNEEALKLWDMMIDKGITPT----AASFRALSI--G  541 (650)
Q Consensus       476 g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~----~~~---~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~--~  541 (650)
                      |. -++|+.+++.+.+-.. -|...-|....    .|.   ....+.+-+.+-+-+.+.|+.|-    ...-+.+..  .
T Consensus       393 g~~dekalnLLk~il~ft~-yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEy  471 (549)
T PF07079_consen  393 GQCDEKALNLLKLILQFTN-YDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEY  471 (549)
T ss_pred             CCccHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHH
Confidence            55 7788888888876422 24433333221    221   12223333333333445677653    334444443  3


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA  606 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  606 (650)
                      +...|++.++.-+-.-+.+..| ++.++..+|-++....++++|..++..+     ||+..++..
T Consensus       472 Lysqgey~kc~~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~L-----P~n~~~~ds  530 (549)
T PF07079_consen  472 LYSQGEYHKCYLYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKL-----PPNERMRDS  530 (549)
T ss_pred             HHhcccHHHHHHHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhC-----CCchhhHHH
Confidence            5678999999887777777666 8899999999999999999999999875     667666654

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.02  E-value=0.53  Score=48.62  Aligned_cols=362  Identities=14%  Similarity=0.151  Sum_probs=177.1

Q ss_pred             HcCCCHHHHHHHHHHHH--------HCCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHH
Q 045674          193 GGLGMVEELLWVWRSMK--------ENGIEPSLYTYNF-----LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMI  259 (650)
Q Consensus       193 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~-----ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  259 (650)
                      .+..++++-..+-+.+.        ..|++....-|..     ++.-++..+.+..|.++.+.+...-.. +...|....
T Consensus       400 l~~~~~d~~~~v~~~lrVln~~r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa  478 (829)
T KOG2280|consen  400 LRTPNPDEYMRVCRELRVLNALRDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWA  478 (829)
T ss_pred             cccCChHHHHHHHHHHHHHhhhcccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHH
Confidence            34445565554444332        3466666665544     456667788899999988887632111 145666667


Q ss_pred             HHHHHcCC--hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHHHHHHHHH
Q 045674          260 KGYCKVGK--TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE----IPSHAYNLVIGGLC  333 (650)
Q Consensus       260 ~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~  333 (650)
                      ..+.+..+  -+++.+..++=...-. -....|..+.+.....|+++.|..+++.=...+..    .+..-+...+.-..
T Consensus       479 ~~kI~~~d~~d~~vld~I~~kls~~~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kai  557 (829)
T KOG2280|consen  479 RRKIKQSDKMDEEVLDKIDEKLSAKL-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAI  557 (829)
T ss_pred             HHHHhccCccchHHHHHHHHHhcccC-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHH
Confidence            66766532  2233333333222212 34567888888888899999998887642222111    01111223333444


Q ss_pred             hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674          334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ  413 (650)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  413 (650)
                      +.|+.+-...++-.+...-   +...      .+.-..+...|..+|.+..+..   |..+.   -+ +..+++-.++..
T Consensus       558 es~d~~Li~~Vllhlk~~~---~~s~------l~~~l~~~p~a~~lY~~~~r~~---~~~~l---~d-~y~q~dn~~~~a  621 (829)
T KOG2280|consen  558 ESGDTDLIIQVLLHLKNKL---NRSS------LFMTLRNQPLALSLYRQFMRHQ---DRATL---YD-FYNQDDNHQALA  621 (829)
T ss_pred             hcCCchhHHHHHHHHHHHH---HHHH------HHHHHHhchhhhHHHHHHHHhh---chhhh---hh-hhhcccchhhhh
Confidence            5555555555544443320   1111      1112234455666666655421   21111   11 122222222222


Q ss_pred             HH--HHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHH----------HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHH
Q 045674          414 YF--EFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAE----------ELFEEMVEK-GCPRDSYCYNVLIDALAKCGKLD  479 (650)
Q Consensus       414 ~~--~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~----------~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~  479 (650)
                      .|  +..... .+..-..........+.+.....-..          .+.+.+... |..-...+.+.-+.-+...|+..
T Consensus       622 ~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k  701 (829)
T KOG2280|consen  622 SFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNK  701 (829)
T ss_pred             hhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchH
Confidence            22  110000 01111111223333444333211111          111111111 11122223344445555667777


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      +|.++-.+..    -||...|..-+.+++..+++++-.++-+....      +.-|.-...+|.+.|+.++|.+++-+..
T Consensus       702 ~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c~~~~n~~EA~KYiprv~  771 (829)
T KOG2280|consen  702 RAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEACLKQGNKDEAKKYIPRVG  771 (829)
T ss_pred             HHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHHHhcccHHHHhhhhhccC
Confidence            7776665543    25777777777777777777776665554331      2223345566777788888877776654


Q ss_pred             hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          560 PKGIIPETAFEDMITCLCKTGRIKEACKLAD  590 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  590 (650)
                      ..        ...+.+|.+.|++.+|.+..-
T Consensus       772 ~l--------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  772 GL--------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             Ch--------HHHHHHHHHhccHHHHHHHHH
Confidence            32        145667777777777766543

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=97.01  E-value=0.042  Score=51.13  Aligned_cols=229  Identities=12%  Similarity=0.093  Sum_probs=146.1

Q ss_pred             HHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHh
Q 045674          332 LCKVGKCIEGHAIFESMIRRG--CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYE--GVEPD---EVTYGVIISGLCK  404 (650)
Q Consensus       332 ~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~  404 (650)
                      +....+..+|+..+.+.+.+-  ......++..+..+.++.|.+++++..--..+..  ...-.   ...|..+.+++-+
T Consensus        16 Ly~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~   95 (518)
T KOG1941|consen   16 LYQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEK   95 (518)
T ss_pred             HhcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456778888888888777641  1112346667778888889888877643322211  01111   1234445555555


Q ss_pred             cCCHHHHHHHHHHHHHC-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHHc
Q 045674          405 NERLEEAMQYFEFCRAN-GVAV---NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-----PRDSYCYNVLIDALAKC  475 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~-~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~  475 (650)
                      ..++.+++.+-..-... |..+   .-.....+..++...+.++++++.|+...+...     .....++..|...|.+.
T Consensus        96 l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l  175 (518)
T KOG1941|consen   96 LCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQL  175 (518)
T ss_pred             HHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHH
Confidence            55556666555544332 2222   224455677888888999999999998876321     12345788999999999


Q ss_pred             CCHHHHHHHHHHHHH----cCCCCCHH-----HHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHH
Q 045674          476 GKLDEALALFKRMED----EGCDQTVY-----TYTILINGMFKEHRNEEALKLWDMMID----KGITPT-AASFRALSIG  541 (650)
Q Consensus       476 g~~~~A~~~~~~~~~----~~~~~~~~-----~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~  541 (650)
                      .++++|..+..+..+    .++..-..     ....|..++-..|+.-.|.+.-++..+    .|-.+. ...+..++..
T Consensus       176 ~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDI  255 (518)
T KOG1941|consen  176 KDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADI  255 (518)
T ss_pred             HhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHH
Confidence            999999988877654    23321111     222344456678888888888887664    343322 2345678888


Q ss_pred             HHhcCCHHHHHHHHHHHhh
Q 045674          542 LCLSGKVARACKILDELAP  560 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~  560 (650)
                      |...|+.+.|..-|+.+..
T Consensus       256 yR~~gd~e~af~rYe~Am~  274 (518)
T KOG1941|consen  256 YRSRGDLERAFRRYEQAMG  274 (518)
T ss_pred             HHhcccHhHHHHHHHHHHH
Confidence            9999999999999998874

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=96.98  E-value=0.29  Score=44.96  Aligned_cols=225  Identities=21%  Similarity=0.144  Sum_probs=143.3

Q ss_pred             CCHHHHHHHHHHHHHCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          371 GSMNEAINIFERMKYEGVE-PDEVTYGVIISGLCKNERLEEAMQYFEFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      +....+...+......... .....+......+...+.+..+...+...... ........+......+...++++.+..
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  116 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALE  116 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHH
Confidence            4444555555554443211 12345555666667777777777777666542 222244555566666667777777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          449 LFEEMVEKGCPRDSYCYNVLID-ALAKCGKLDEALALFKRMEDEGC--DQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      .+.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+++...+.++..
T Consensus       117 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  195 (291)
T COG0457         117 LLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALK  195 (291)
T ss_pred             HHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh
Confidence            777777643222 122222233 67778888888888888755322  12333444444446677888888888888887


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .........+..+...+...+++++|...+..+....+.....+..+...+...|.++++...+.+..+..
T Consensus       196 ~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  266 (291)
T COG0457         196 LNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELD  266 (291)
T ss_pred             hCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            53221356777788888888889999999999888766545566666666667777999999998888764

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.97  E-value=0.026  Score=48.89  Aligned_cols=71  Identities=20%  Similarity=0.312  Sum_probs=44.0

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----------------hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMF----------------KEHRNEEALKLWDMMIDKGITPTAASFRALS  539 (650)
Q Consensus       476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----------------~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~  539 (650)
                      |..+=....++.|.+-|+.-|..+|+.|+.++=                .-.+.+-|++++++|...|+-||.+++..++
T Consensus        66 GHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll  145 (228)
T PF06239_consen   66 GHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDLLEQMENNGVMPDKETEQMLL  145 (228)
T ss_pred             ChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHH
Confidence            334434444444444444444445544444332                1234567888999999999999999998888


Q ss_pred             HHHHhcC
Q 045674          540 IGLCLSG  546 (650)
Q Consensus       540 ~~~~~~g  546 (650)
                      ..+.+.+
T Consensus       146 ~iFG~~s  152 (228)
T PF06239_consen  146 NIFGRKS  152 (228)
T ss_pred             HHhcccc
Confidence            8875544

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>KOG1258 consensus mRNA processing protein [RNA processing and modification]

Probab=96.96  E-value=0.52  Score=47.54  Aligned_cols=383  Identities=11%  Similarity=0.020  Sum_probs=213.4

Q ss_pred             CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-cCCCHHHHHHHHHHHHHC-CCC-CCHHH
Q 045674          143 YSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG-GLGMVEELLWVWRSMKEN-GIE-PSLYT  219 (650)
Q Consensus       143 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~a~~~~~~~~~~-~~~-~~~~~  219 (650)
                      +|-..--|...+..=.+.|..+.+.++|++.+. +++.+...|......+. ..|+.+.....|++.... |.. .+...
T Consensus        75 yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~l  153 (577)
T KOG1258|consen   75 YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPL  153 (577)
T ss_pred             CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHH
Confidence            444444566666677788888999999998887 46777777777766554 447777888888887765 322 24556


Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH---c------CChhHHHHHHHHHHhC-C---CCCC
Q 045674          220 YNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK---V------GKTQKAMEKFRAMEAR-N---VQPD  286 (650)
Q Consensus       220 ~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~------g~~~~A~~~~~~~~~~-~---~~~~  286 (650)
                      |...+..-..++++.....+++++++.    ...-++..-..|.+   .      ...+++.++-...... .   ....
T Consensus       154 Wdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~  229 (577)
T KOG1258|consen  154 WDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLNQNEEKILLSIDELIQLRSDVAERSKITHSQEP  229 (577)
T ss_pred             HHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHhcCChhhhcCHHHHHHHhhhHHhhhhcccccCh
Confidence            777777777788888888888888853    22333333322222   1      1222222222222110 0   0000


Q ss_pred             HHHHHHHHHHHH-hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC---C----CcCHH
Q 045674          287 KITYMTLIQACY-LEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG---C----QPNVA  358 (650)
Q Consensus       287 ~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~----~~~~~  358 (650)
                      ...+..-+.--. ..+..+++..+..+..           ..--.++-......+.+..|+..+.+-   +    .++..
T Consensus       230 ~e~~~~~v~~~~~~s~~l~~~~~~l~~~~-----------~~~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~  298 (577)
T KOG1258|consen  230 LEELEIGVKDSTDPSKSLTEEKTILKRIV-----------SIHEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLK  298 (577)
T ss_pred             hHHHHHHHhhccCccchhhHHHHHHHHHH-----------HHHHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHH
Confidence            000000000000 0011111111111111           011112222333344444555554431   1    22456


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG  438 (650)
Q Consensus       359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  438 (650)
                      +|...+..-...|+++.+.-+|++..-- +..-...|-..+.-....|+.+-|..++....+...+-...+-..-....-
T Consensus       299 nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f~e  377 (577)
T KOG1258|consen  299 NWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARFEE  377 (577)
T ss_pred             HHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHHHH
Confidence            7888888888999999999999987631 111233455555555566999988888877766654433333333333345


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH---HHHHHHHHcCCCCCHHHHHHHHHHH-----Hhc
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL---ALFKRMEDEGCDQTVYTYTILINGM-----FKE  510 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~---~~~~~~~~~~~~~~~~~~~~l~~~~-----~~~  510 (650)
                      ..|+++.|..+++.+.+.- +--...-..-+....+.|+.+.+.   .++........  +......+.--+     .-.
T Consensus       378 ~~~n~~~A~~~lq~i~~e~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~--~~~i~~~l~~~~~r~~~~i~  454 (577)
T KOG1258|consen  378 SNGNFDDAKVILQRIESEY-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKE--NNGILEKLYVKFARLRYKIR  454 (577)
T ss_pred             hhccHHHHHHHHHHHHhhC-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhccccc--CcchhHHHHHHHHHHHHHHh
Confidence            5789999999999998874 333334444556677788888887   34433333211  222333333222     246


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          511 HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       511 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      ++.+.|..++.++.+. ..++...|..++......+
T Consensus       455 ~d~~~a~~~l~~~~~~-~~~~k~~~~~~~~~~~~~~  489 (577)
T KOG1258|consen  455 EDADLARIILLEANDI-LPDCKVLYLELIRFELIQP  489 (577)
T ss_pred             cCHHHHHHHHHHhhhc-CCccHHHHHHHHHHHHhCC
Confidence            8899999999999886 3446666666666555443

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.95  E-value=0.0025  Score=40.23  Aligned_cols=39  Identities=18%  Similarity=0.149  Sum_probs=19.6

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      ++..++.+|...|++++|+++|+++++.. |.|..+|..+
T Consensus         3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~-P~~~~a~~~L   41 (44)
T PF13428_consen    3 AWLALARAYRRLGQPDEAERLLRRALALD-PDDPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCCHHHHHHh
Confidence            34445555555555555555555555543 4444444443

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.94  E-value=0.16  Score=46.43  Aligned_cols=52  Identities=23%  Similarity=0.364  Sum_probs=26.2

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME  489 (650)
Q Consensus       437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  489 (650)
                      ....|++.+|...|+...... +.+......++.+|...|+.+.|..++..+.
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~-~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP  195 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAA-PENSEAKLLLAECLLAAGDVEAAQAILAALP  195 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhC-cccchHHHHHHHHHHHcCChHHHHHHHHhCc
Confidence            344455555555555555442 3334444455555555555555555555443

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=96.93  E-value=0.017  Score=49.97  Aligned_cols=104  Identities=18%  Similarity=0.223  Sum_probs=68.3

Q ss_pred             CCHHhHHHHHHHHHh-----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674          390 PDEVTYGVIISGLCK-----NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC  464 (650)
Q Consensus       390 p~~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  464 (650)
                      .+..+|..+++.|.+     .|.++-....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-          
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F----------  112 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF----------  112 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh----------
Confidence            467777777777764     35566666667777777777777777777776654 2221 111111111          


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR  512 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  512 (650)
                           .-|  -.+-+-|++++++|...|+.||..++..++..+.+.+.
T Consensus       113 -----~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  113 -----MHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             -----ccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence                 111  12446689999999999999999999999999855443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.92  E-value=0.082  Score=53.87  Aligned_cols=160  Identities=14%  Similarity=0.125  Sum_probs=98.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHH-HH
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVY------TYTILINGMF----KEHRNEEALKLWDMMIDKGITPTAAS-FR  536 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~-~~  536 (650)
                      ++....-.|+-+.+++.+.+..+.+---.+.      .|...+..++    .....+.|.++++.+.+.  -|+... ..
T Consensus       194 ll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~lfl~  271 (468)
T PF10300_consen  194 LLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSALFLF  271 (468)
T ss_pred             HHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcHHHHH
Confidence            3344444566666666666554421111111      1222222222    245667888888888875  344443 34


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHH
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA-LINAL  611 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~-l~~~~  611 (650)
                      .-++.+...|+.++|++.|+++......    ..-.+..++.++.-.++|++|.+.|.++.+.+ .-+..+|.. .+-++
T Consensus       272 ~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~a~c~  350 (468)
T PF10300_consen  272 FEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLAAACL  350 (468)
T ss_pred             HHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHH
Confidence            4566777888899999988877642221    44556778888888999999999999988765 334444433 34445


Q ss_pred             HhcCCH-------HHHHHHHHHHHHC
Q 045674          612 RKAGNA-------DLAIKLMHSKIGV  630 (650)
Q Consensus       612 ~~~g~~-------~~A~~~~~~~~~~  630 (650)
                      ...|+.       ++|.+++.++...
T Consensus       351 ~~l~~~~~~~~~~~~a~~l~~~vp~l  376 (468)
T PF10300_consen  351 LMLGREEEAKEHKKEAEELFRKVPKL  376 (468)
T ss_pred             HhhccchhhhhhHHHHHHHHHHHHHH
Confidence            677877       8888888876653

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.92  E-value=0.17  Score=46.81  Aligned_cols=162  Identities=12%  Similarity=0.012  Sum_probs=105.1

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCH----HHHHHH
Q 045674          148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSL----YTYNFL  223 (650)
Q Consensus       148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l  223 (650)
                      +-.+.-+..+...|++.+|...++++++. +|.|...+...=.++...|+.+.-...++++... ..++.    ..-..+
T Consensus       104 Ek~h~~aai~~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~Gmy  181 (491)
T KOG2610|consen  104 EKRHAKAAILWGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMY  181 (491)
T ss_pred             HhhhhhHHHhhccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHH
Confidence            33344455667788888888888888875 4777777888888888888888888888888765 12233    222333


Q ss_pred             HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCC---HHHHHHHHHHHHhc
Q 045674          224 MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD---KITYMTLIQACYLE  300 (650)
Q Consensus       224 l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~  300 (650)
                      .-++...|-+++|++.-++..+.+ +.|..+..++.+.+-..|+..++.+++.+-...=-...   ..-|-.....+...
T Consensus       182 aFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~  260 (491)
T KOG2610|consen  182 AFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEG  260 (491)
T ss_pred             HhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcc
Confidence            345567888888888888887765 55677777788888888888888887765432100000   01111122233445


Q ss_pred             CCHHHHHHHHHH
Q 045674          301 GDFDSCLSLYHE  312 (650)
Q Consensus       301 ~~~~~a~~~~~~  312 (650)
                      +.++.|+++|+.
T Consensus       261 aeye~aleIyD~  272 (491)
T KOG2610|consen  261 AEYEKALEIYDR  272 (491)
T ss_pred             cchhHHHHHHHH
Confidence            666677766654

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.90  E-value=0.67  Score=47.93  Aligned_cols=341  Identities=14%  Similarity=0.113  Sum_probs=176.2

Q ss_pred             CCCCCCHHHHHH-----HHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHhcCC
Q 045674          176 KGFLMTVSAANS-----LIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF---IESSELVFKVMENGK  247 (650)
Q Consensus       176 ~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---~~~A~~~~~~~~~~~  247 (650)
                      -|++.+..-|..     ++..+...+.+..|+++-.-+...... +...|......+++..+   -+.+..+-+++... 
T Consensus       426 ~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-  503 (829)
T KOG2280|consen  426 IGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-  503 (829)
T ss_pred             cCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhccc-
Confidence            355655555543     556667778888888887776543222 24556666666655532   22233333333321 


Q ss_pred             CCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCC----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674          248 VGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQ----PDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH  323 (650)
Q Consensus       248 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~  323 (650)
                      . .....|..+.+-....|+.+-|..+++.=...+..    .+..-+...+.-+.+.|+.+....++-.+...-   +..
T Consensus       504 ~-~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s  579 (829)
T KOG2280|consen  504 L-TPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS  579 (829)
T ss_pred             C-CCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH
Confidence            1 34556777777777889999888877642221100    000111222233334444444444433333220   000


Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHH--HHH----HCCCCCCHHhHHH
Q 045674          324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFE--RMK----YEGVEPDEVTYGV  397 (650)
Q Consensus       324 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~--~~~----~~~~~p~~~~~~~  397 (650)
                      .      ......+.-.|..++.+..+..   +..   .+-..|. .++-.+++..|.  ...    ..+..|+   ...
T Consensus       580 ~------l~~~l~~~p~a~~lY~~~~r~~---~~~---~l~d~y~-q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~  643 (829)
T KOG2280|consen  580 S------LFMTLRNQPLALSLYRQFMRHQ---DRA---TLYDFYN-QDDNHQALASFHLQASYAAETIEGRIPA---LKT  643 (829)
T ss_pred             H------HHHHHHhchhhhHHHHHHHHhh---chh---hhhhhhh-cccchhhhhhhhhhhhhhhhhhcccchh---HHH
Confidence            0      1111123344455555554431   111   1112222 222222222221  100    1122333   223


Q ss_pred             HHHHHHhcCCHH---HH-------HHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          398 IISGLCKNERLE---EA-------MQYFEFCRAN-GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN  466 (650)
Q Consensus       398 l~~~~~~~g~~~---~a-------~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  466 (650)
                      ....+.+.....   +|       +.+.+.+... +......+.+--+.-+...|+..+|.++-.+..    -||...|.
T Consensus       644 ~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~w  719 (829)
T KOG2280|consen  644 AANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWW  719 (829)
T ss_pred             HHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHH
Confidence            333344433211   11       1122222211 222222334444556677899999988876654    47888898


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      .-+.++...+++++-+++-+...      .+.-|.-+..+|.+.|+.+||.+++-+.-.     ..    ....+|.+.|
T Consensus       720 Lk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n~~EA~KYiprv~~-----l~----ekv~ay~~~~  784 (829)
T KOG2280|consen  720 LKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGNKDEAKKYIPRVGG-----LQ----EKVKAYLRVG  784 (829)
T ss_pred             HHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhcccHHHHhhhhhccCC-----hH----HHHHHHHHhc
Confidence            89999999999998777665543      233466677889999999999998876432     11    4567788999


Q ss_pred             CHHHHHHHHHH
Q 045674          547 KVARACKILDE  557 (650)
Q Consensus       547 ~~~~A~~~~~~  557 (650)
                      ++.+|.+.--+
T Consensus       785 ~~~eAad~A~~  795 (829)
T KOG2280|consen  785 DVKEAADLAAE  795 (829)
T ss_pred             cHHHHHHHHHH
Confidence            99998875433

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=96.88  E-value=0.15  Score=46.61  Aligned_cols=51  Identities=22%  Similarity=0.227  Sum_probs=25.3

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEM  453 (650)
Q Consensus       402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  453 (650)
                      ....|++.+|...|+........ +...-..++.+|...|+.+.|..++..+
T Consensus       144 ~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~l  194 (304)
T COG3118         144 LIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAAL  194 (304)
T ss_pred             hhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhC
Confidence            34455555555555555544333 2333344555555555555555555444

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.85  E-value=0.11  Score=50.90  Aligned_cols=102  Identities=17%  Similarity=0.115  Sum_probs=64.1

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGK-IRTALI  608 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~  608 (650)
                      ..+-..++.++.+.|+.++|++.+.++.+..+.  ...+...|+.++...+.+.++..++.+.-+...+.+.. .|...+
T Consensus       259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaAL  338 (539)
T PF04184_consen  259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAAL  338 (539)
T ss_pred             hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHH
Confidence            333455677777888888888888888765554  44577788888888888888888888765433233322 222222


Q ss_pred             HHHHhcCC---------------HHHHHHHHHHHHHCCCC
Q 045674          609 NALRKAGN---------------ADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       609 ~~~~~~g~---------------~~~A~~~~~~~~~~~~~  633 (650)
                      -..+..|+               -..|.+.++++.+.++.
T Consensus       339 LkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPH  378 (539)
T PF04184_consen  339 LKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPH  378 (539)
T ss_pred             HHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCC
Confidence            12222222               13366778888887665

The molecular function of this protein is uncertain.

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.85  E-value=0.097  Score=44.51  Aligned_cols=118  Identities=10%  Similarity=0.018  Sum_probs=79.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          515 EALKLWDMMIDKGITPTAASF--RALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLA  589 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~  589 (650)
                      +.....+++...........+  ..++..+...|++++|...++..+....+   ...+-..|+.+....|.+++|...+
T Consensus        70 ~~~~~~ekf~~~n~~t~Ya~laaL~lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L  149 (207)
T COG2976          70 KSIAAAEKFVQANGKTIYAVLAALELAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTL  149 (207)
T ss_pred             hhHHHHHHHHhhccccHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence            444455555544323222222  33456678889999999988888765333   2234456788888999999999988


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          590 DGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       590 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      +...+.+  -.+.....-++++...|+.++|+..|+++++.+..|
T Consensus       150 ~t~~~~~--w~~~~~elrGDill~kg~k~~Ar~ay~kAl~~~~s~  192 (207)
T COG2976         150 DTIKEES--WAAIVAELRGDILLAKGDKQEARAAYEKALESDASP  192 (207)
T ss_pred             hcccccc--HHHHHHHHhhhHHHHcCchHHHHHHHHHHHHccCCh
Confidence            8765432  133344566888889999999999999999887443

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=96.84  E-value=0.0043  Score=56.83  Aligned_cols=90  Identities=16%  Similarity=0.091  Sum_probs=41.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674          505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE  584 (650)
Q Consensus       505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  584 (650)
                      ..|.+.|.+++|+.+|.+.+...+. +..++..-+.+|.+..++..|..-.+.++..+-.-..+|..-+.+-...|+..+
T Consensus       105 N~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E  183 (536)
T KOG4648|consen  105 NTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME  183 (536)
T ss_pred             hhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence            3444555555555555544443111 444444444445555555544444444444322233344444444444445555


Q ss_pred             HHHHHHHHHHc
Q 045674          585 ACKLADGIVDR  595 (650)
Q Consensus       585 A~~~~~~~~~~  595 (650)
                      |.+-++.++++
T Consensus       184 AKkD~E~vL~L  194 (536)
T KOG4648|consen  184 AKKDCETVLAL  194 (536)
T ss_pred             HHHhHHHHHhh
Confidence            55555554444

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=96.81  E-value=0.0032  Score=39.74  Aligned_cols=42  Identities=17%  Similarity=0.127  Sum_probs=34.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT  574 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  574 (650)
                      .++..++..|...|++++|.++|+++++..|++..++..++.
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~   43 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ   43 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence            356678888888888888888888888888888888877764

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.81  E-value=0.87  Score=47.81  Aligned_cols=175  Identities=11%  Similarity=0.072  Sum_probs=92.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          151 ISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSA----ANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG  226 (650)
Q Consensus       151 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~----~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (650)
                      ..-+.++.+...++.|..+-..--     .+...    ....+.-+.+.|++++|...|-+.+.. ++|.     .++.-
T Consensus       338 e~kL~iL~kK~ly~~Ai~LAk~~~-----~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~k  406 (933)
T KOG2114|consen  338 ETKLDILFKKNLYKVAINLAKSQH-----LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEPS-----EVIKK  406 (933)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHhcC-----CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CChH-----HHHHH
Confidence            345556666666666665543321     12222    233334445667777777777665543 2332     23334


Q ss_pred             HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC  306 (650)
Q Consensus       227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  306 (650)
                      +.....+..-...++.+.+.|+. +...-..|+.+|.+.++.++-.++.+... .|..  ..-....+..+.+.+-.++|
T Consensus       407 fLdaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a  482 (933)
T KOG2114|consen  407 FLDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEA  482 (933)
T ss_pred             hcCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHH
Confidence            44555555556666666666643 44455567777777777777666665543 2211  11233445555566666666


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 045674          307 LSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESM  348 (650)
Q Consensus       307 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  348 (650)
                      ..+-.....     .......+   +-..+++++|.+++..+
T Consensus       483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl  516 (933)
T KOG2114|consen  483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL  516 (933)
T ss_pred             HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence            555444322     22222222   33456777777776654

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=96.79  E-value=0.031  Score=43.63  Aligned_cols=90  Identities=14%  Similarity=0.037  Sum_probs=69.0

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC-CC---cHHHHHHHHHHHHHcCC
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG-II---PETAFEDMITCLCKTGR  581 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~---~~~~~~~l~~~~~~~g~  581 (650)
                      ++...|+.++|++.|.+.+..-++ ....|+.-++++.-+|+.++|++-++++++.. +.   -...|..-+..|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            456788888888888888876444 67778888888888888888888888888653 32   23456666777888888


Q ss_pred             HHHHHHHHHHHHHcC
Q 045674          582 IKEACKLADGIVDRE  596 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~  596 (650)
                      -+.|..-|+.+.+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            888888888888776

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.76  E-value=0.12  Score=47.71  Aligned_cols=154  Identities=13%  Similarity=0.099  Sum_probs=92.2

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHH--HHHHHHHhcCCHH
Q 045674          438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE-GCDQTVYTYT--ILINGMFKEHRNE  514 (650)
Q Consensus       438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~--~l~~~~~~~~~~~  514 (650)
                      ...|++.+|...++++++. +|.|...+..-=.++...|+.+.-...+++++.. +......+|.  .+..++...|-++
T Consensus       114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~  192 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYD  192 (491)
T ss_pred             hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccch
Confidence            3456666666667777665 4667666666666777777777777777777654 2111112222  2233344677777


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLAD  590 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~  590 (650)
                      +|.+.-++..+.+.. |.........++-..|++.++.++..+-...--.    -..-|-+.+-++...+.++.|+++|+
T Consensus       193 dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD  271 (491)
T KOG2610|consen  193 DAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD  271 (491)
T ss_pred             hHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence            777777777765433 5556666666677777777777776655432111    22345555666666677777777776


Q ss_pred             HHH
Q 045674          591 GIV  593 (650)
Q Consensus       591 ~~~  593 (650)
                      .-+
T Consensus       272 ~ei  274 (491)
T KOG2610|consen  272 REI  274 (491)
T ss_pred             HHH
Confidence            543

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.74  E-value=0.37  Score=42.58  Aligned_cols=204  Identities=14%  Similarity=0.121  Sum_probs=110.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674          395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK  474 (650)
Q Consensus       395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (650)
                      |.....+|...+++++|...+.+..+. ...+...|.       ....+++|.-+.+++.+.  +.-...|+--...|..
T Consensus        34 yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY~E  103 (308)
T KOG1585|consen   34 YEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELYVE  103 (308)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHHHH
Confidence            444445566677777777766655432 111222111       122344444455554442  2223344445556777


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC---CCC--CCHHHHHHHHHHHHhcCCHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK---GIT--PTAASFRALSIGLCLSGKVA  549 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~~--p~~~~~~~l~~~~~~~g~~~  549 (650)
                      +|..+.|-..+++.-+.                ....++++|+++|++....   +-.  --...+....+.+.+..+++
T Consensus       104 ~GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~  167 (308)
T KOG1585|consen  104 CGSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFT  167 (308)
T ss_pred             hCCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhh
Confidence            77777666666655431                3445566666666665431   101  11223445556677777777


Q ss_pred             HHHHHHHHHhhC------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          550 RACKILDELAPK------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE---REIPGKIRTALINALRKAGNADLA  620 (650)
Q Consensus       550 ~A~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A  620 (650)
                      +|...+.+-...      .+.....+...+-++.-..++..|.+.++...+.+   -+.+..+...|+.+| ..|+.+++
T Consensus       168 Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~  246 (308)
T KOG1585|consen  168 EAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEI  246 (308)
T ss_pred             HHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHH
Confidence            777666554321      11233455666666777778888888888855432   123455666666654 57788877


Q ss_pred             HHHHH
Q 045674          621 IKLMH  625 (650)
Q Consensus       621 ~~~~~  625 (650)
                      .+++.
T Consensus       247 ~kvl~  251 (308)
T KOG1585|consen  247 KKVLS  251 (308)
T ss_pred             HHHHc
Confidence            76654

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.72  E-value=1  Score=47.38  Aligned_cols=179  Identities=10%  Similarity=0.038  Sum_probs=110.0

Q ss_pred             HHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHH
Q 045674          185 ANSLIKSFGGLGMVEELLWVWRSMKENGIEPS--LYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGY  262 (650)
Q Consensus       185 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  262 (650)
                      ...-+..+.+...++-|+.+.+.-.   .+++  ..........+.+.|++++|...+-+.+.. +.|     ..+|.-|
T Consensus       337 le~kL~iL~kK~ly~~Ai~LAk~~~---~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~kf  407 (933)
T KOG2114|consen  337 LETKLDILFKKNLYKVAINLAKSQH---LDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIKKF  407 (933)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHhcC---CCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHHHh
Confidence            3345566667777777777665432   2222  112233334567889999998877766632 122     2345666


Q ss_pred             HHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 045674          263 CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGH  342 (650)
Q Consensus       263 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  342 (650)
                      ....+..+-..+++.+.+.|.. +...-..|+.+|.+.++.++-.+..+... .|.-  ..-....+..+.+.+-.++|.
T Consensus       408 Ldaq~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~-~g~~--~fd~e~al~Ilr~snyl~~a~  483 (933)
T KOG2114|consen  408 LDAQRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCD-KGEW--FFDVETALEILRKSNYLDEAE  483 (933)
T ss_pred             cCHHHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCC-Ccce--eeeHHHHHHHHHHhChHHHHH
Confidence            6677777778888888888765 55566778899999999888777766544 2211  111344556666666667766


Q ss_pred             HHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          343 AIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK  384 (650)
Q Consensus       343 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  384 (650)
                      -+-.....     +..   .+--.+...+++++|++++..+.
T Consensus       484 ~LA~k~~~-----he~---vl~ille~~~ny~eAl~yi~slp  517 (933)
T KOG2114|consen  484 LLATKFKK-----HEW---VLDILLEDLHNYEEALRYISSLP  517 (933)
T ss_pred             HHHHHhcc-----CHH---HHHHHHHHhcCHHHHHHHHhcCC
Confidence            55443322     222   23334556788999999888764

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=96.71  E-value=1.1  Score=47.77  Aligned_cols=187  Identities=11%  Similarity=0.113  Sum_probs=106.8

Q ss_pred             hHHHHHHHHHHHcCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHCCCCCCHH-----HHHHHHHHHHcCCCHH
Q 045674          128 NVGLRLFTWAARQKKYSHN--LECYISLIDCLA-LCGDVDRVRLVFNELKEKGFLMTVS-----AANSLIKSFGGLGMVE  199 (650)
Q Consensus       128 ~~al~~~~~~~~~~~~~~~--~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~  199 (650)
                      ..|++.++.+.+....+|.  ..++..++.+|. ...++++|+..+++.....-.++..     ....++..+.+.+...
T Consensus        38 ~~ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~  117 (608)
T PF10345_consen   38 ATAIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA  117 (608)
T ss_pred             HHHHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH
Confidence            4556666666655444443  345667888886 7789999999999876542122211     2234556666666555


Q ss_pred             HHHHHHHHHHHCCCC----CCHHHHHHH-HHHHHhcCChhHHHHHHHHHhcCC---CCCChhhHHHHHHHHH--HcCChh
Q 045674          200 ELLWVWRSMKENGIE----PSLYTYNFL-MNGLVNSMFIESSELVFKVMENGK---VGPDVVTYNTMIKGYC--KVGKTQ  269 (650)
Q Consensus       200 ~a~~~~~~~~~~~~~----~~~~~~~~l-l~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~--~~g~~~  269 (650)
                       |....++.++.--.    +-...|..+ +..+...+++..|.+.++.+...-   ..+...++..++.+..  +.+..+
T Consensus       118 -a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~  196 (608)
T PF10345_consen  118 -ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPD  196 (608)
T ss_pred             -HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCch
Confidence             88888877654211    122222322 222223378888888888776432   2334445555554444  345567


Q ss_pred             HHHHHHHHHHhCC---------CCCCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHH
Q 045674          270 KAMEKFRAMEARN---------VQPDKITYMTLIQAC--YLEGDFDSCLSLYHEMDE  315 (650)
Q Consensus       270 ~A~~~~~~~~~~~---------~~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~~~~  315 (650)
                      ++.+.++.+....         ..|...+|..+++.+  ...|+++.+...++++..
T Consensus       197 d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq~  253 (608)
T PF10345_consen  197 DVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQQ  253 (608)
T ss_pred             hHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            7777777663321         123455666666554  456776676666655543

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.67  E-value=0.6  Score=44.07  Aligned_cols=103  Identities=12%  Similarity=0.098  Sum_probs=55.4

Q ss_pred             HHHHHHHHHHHHcCCH---HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          428 MFYSSLIDGLGKAGRV---DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILI  504 (650)
Q Consensus       428 ~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  504 (650)
                      .++..++.+|...+..   ++|..+++.+... ++..+.++..-+..+.+.++.+++.+.+.+|+..- .-....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e-~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESE-YGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHh-CCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            3455666667666553   3455555555443 23345555555666666777777888888777652 11223344444


Q ss_pred             HHHH--hcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          505 NGMF--KEHRNEEALKLWDMMIDKGITPTA  532 (650)
Q Consensus       505 ~~~~--~~~~~~~A~~~~~~~~~~~~~p~~  532 (650)
                      ..+.  .......|...+..++...+.|..
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCCh
Confidence            4331  223345566666666644344443

It is also involved in sporulation [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=96.65  E-value=0.13  Score=42.61  Aligned_cols=122  Identities=19%  Similarity=0.151  Sum_probs=52.4

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH---HHHHHHHHHHhcCCH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVY-TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA---SFRALSIGLCLSGKV  548 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~---~~~~l~~~~~~~g~~  548 (650)
                      .+.+..++|+.-|..+.+.|...-+. ............|+...|...|+++-.....|-..   .-..-+..+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            44555555665565555544331111 01111222334555555555555555433332221   011112233445555


Q ss_pred             HHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          549 ARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       549 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      ++...-.+.+...+.. -...-..|+.+-++.|++..|...|..+..
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~  195 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence            5554444444322211 333444455555555555555555555543

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=96.54  E-value=0.23  Score=50.72  Aligned_cols=26  Identities=8%  Similarity=-0.141  Sum_probs=14.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          395 YGVIISGLCKNERLEEAMQYFEFCRA  420 (650)
Q Consensus       395 ~~~l~~~~~~~g~~~~a~~~~~~~~~  420 (650)
                      +..++....-.|+-+.+++.+....+
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~  216 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASK  216 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhc
Confidence            33444444556666666666666544

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=96.51  E-value=0.29  Score=38.59  Aligned_cols=136  Identities=18%  Similarity=0.163  Sum_probs=74.3

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH---HHHHHHHHHHhcCCHH
Q 045674          438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVY---TYTILINGMFKEHRNE  514 (650)
Q Consensus       438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~~~~~  514 (650)
                      .-.|.+++..++..+....   .+..-+|.++.-....-+-+-..++++.+-+.   -|..   ..-..+.+|...|.  
T Consensus        13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki---FDis~C~NlKrVi~C~~~~n~--   84 (161)
T PF09205_consen   13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI---FDISKCGNLKRVIECYAKRNK--   84 (161)
T ss_dssp             HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG---S-GGG-S-THHHHHHHHHTT---
T ss_pred             HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh---cCchhhcchHHHHHHHHHhcc--
Confidence            3457777778877777764   34444555554444444444444555444332   1111   11223333333222  


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                                      +...+...+..+..+|+-++-.+++..+.+.+-.+++.+..++.+|.+.|+..+|.++++++-+
T Consensus        85 ----------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   85 ----------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             ------------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ----------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence                            3344455566677788888888888888765555888888888888888888888888888888


Q ss_pred             cCC
Q 045674          595 RER  597 (650)
Q Consensus       595 ~~~  597 (650)
                      .|.
T Consensus       149 kG~  151 (161)
T PF09205_consen  149 KGL  151 (161)
T ss_dssp             TT-
T ss_pred             hch
Confidence            773

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=96.48  E-value=0.082  Score=42.83  Aligned_cols=84  Identities=13%  Similarity=0.046  Sum_probs=61.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKG--FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFL  223 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  223 (650)
                      +...+..-+....+.|++++|++.|+.+..+-  .+....+...|+.+|.+.|++++|+..++++++....--...|...
T Consensus         9 ~~~~ly~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y   88 (142)
T PF13512_consen    9 SPQELYQEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYY   88 (142)
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHH
Confidence            45566667777788899999999999988761  2445667778888999999999999999998887544333455555


Q ss_pred             HHHHHh
Q 045674          224 MNGLVN  229 (650)
Q Consensus       224 l~~~~~  229 (650)
                      +.+++.
T Consensus        89 ~~gL~~   94 (142)
T PF13512_consen   89 MRGLSY   94 (142)
T ss_pred             HHHHHH
Confidence            555543

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.42  E-value=1.1  Score=44.24  Aligned_cols=66  Identities=12%  Similarity=0.136  Sum_probs=46.9

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQ---TVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      ....+|..++..+.+.|+++.|...+.++...+...   .......-+..+...|+..+|+..++..++
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            345677888888888899999988888887753211   233344445666778888888888888776

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.33  E-value=0.0043  Score=36.36  Aligned_cols=30  Identities=13%  Similarity=0.166  Sum_probs=14.2

Q ss_pred             HHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          556 DELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       556 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      +++++.+|.+..+|..++.+|...|++++|
T Consensus         3 ~kAie~~P~n~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen    3 KKAIELNPNNAEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHCCCCHHHHHHHHHHHHHCcCHHhh
Confidence            344444444444444444444444444444

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=96.25  E-value=1.3  Score=43.70  Aligned_cols=55  Identities=16%  Similarity=0.270  Sum_probs=34.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN  421 (650)
Q Consensus       363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  421 (650)
                      .+.+.-+.|+++...++.......  .++...+..+.  +.+.|+++++...++.+...
T Consensus         4 ~~eaaWrl~~Wd~l~~~~~~~~~~--~~~~~~~~al~--~l~~~~~~~~~~~i~~~r~~   58 (352)
T PF02259_consen    4 AAEAAWRLGDWDLLEEYLSQSNED--SPEYSFYRALL--ALRQGDYDEAKKYIEKARQL   58 (352)
T ss_pred             HHHHHHhcCChhhHHHHHhhccCC--ChhHHHHHHHH--HHhCccHHHHHHHHHHHHHH
Confidence            355667788888855555554432  23444555554  33788888888888766543

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=96.22  E-value=0.61  Score=46.05  Aligned_cols=57  Identities=23%  Similarity=0.285  Sum_probs=27.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          433 LIDGLGKAGRVDEAEELFEEMVEKGCP-RDSYCYNVLIDALAKCGKLDEALALFKRME  489 (650)
Q Consensus       433 l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  489 (650)
                      +..++.+.|+.++|++.++++.+..-. .+..+...|+.++...+.+.++..++.+..
T Consensus       265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd  322 (539)
T PF04184_consen  265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD  322 (539)
T ss_pred             HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence            444444555555555555555543201 122344445555555555555555555543

The molecular function of this protein is uncertain.

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.22  E-value=0.72  Score=40.02  Aligned_cols=181  Identities=15%  Similarity=0.032  Sum_probs=93.1

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045674          405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL  484 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  484 (650)
                      .|-+.-|.--|.+.....++ -..+||.+.--+...|+++.|.+.|+...+.+..-+....| .+-.+.--|++.-|.+-
T Consensus        78 lGL~~LAR~DftQaLai~P~-m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lN-Rgi~~YY~gR~~LAq~d  155 (297)
T COG4785          78 LGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLN-RGIALYYGGRYKLAQDD  155 (297)
T ss_pred             hhHHHHHhhhhhhhhhcCCC-cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhc-cceeeeecCchHhhHHH
Confidence            34444444445555554444 45667777777777788888888888777765222222222 22223345777777776


Q ss_pred             HHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHH-HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674          485 FKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLW-DMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG  562 (650)
Q Consensus       485 ~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~-~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  562 (650)
                      +.+.-+.++. |-...|-.+.   -..-++.+|..-+ ++....    |..-|...+-.+. .|++.+ ..+++++....
T Consensus       156 ~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~~~----d~e~WG~~iV~~y-LgkiS~-e~l~~~~~a~a  226 (297)
T COG4785         156 LLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAEKS----DKEQWGWNIVEFY-LGKISE-ETLMERLKADA  226 (297)
T ss_pred             HHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHHhc----cHhhhhHHHHHHH-HhhccH-HHHHHHHHhhc
Confidence            6666554332 2222222222   2344555555433 333322    3333333222222 232211 11222222211


Q ss_pred             CC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          563 II-------PETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       563 ~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ..       -.++|..++.-+...|+.++|..+|+-++..+
T Consensus       227 ~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         227 TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            11       23567778888888888888888888877543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=96.21  E-value=1.2  Score=42.60  Aligned_cols=105  Identities=20%  Similarity=0.310  Sum_probs=67.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674          362 ALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG  441 (650)
Q Consensus       362 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  441 (650)
                      ..+.-+...|+...|.++-.+..    .||...|-..+.+++..++|++-.++-..   .   -++.-|..++.+|.+.|
T Consensus       182 ~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~~~~  251 (319)
T PF04840_consen  182 DTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACLKYG  251 (319)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHHHCC
Confidence            34555566777777777666554    46777777777788888887766655332   1   13345667777777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK  486 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (650)
                      +..+|..+...+     +     +..-+..|.+.|++.+|.+.-.
T Consensus       252 ~~~eA~~yI~k~-----~-----~~~rv~~y~~~~~~~~A~~~A~  286 (319)
T PF04840_consen  252 NKKEASKYIPKI-----P-----DEERVEMYLKCGDYKEAAQEAF  286 (319)
T ss_pred             CHHHHHHHHHhC-----C-----hHHHHHHHHHCCCHHHHHHHHH
Confidence            777777766551     1     1445666777777777765543

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG4234 consensus TPR repeat-containing protein [General function prediction only]

Probab=96.20  E-value=0.25  Score=42.08  Aligned_cols=91  Identities=12%  Similarity=0.039  Sum_probs=41.8

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCC-c----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          542 LCLSGKVARACKILDELAPKGII-P----ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      ++..|++++|..-|..+++.-|. +    ...|..-+.++.+.+.++.|++-..++++.+ +....++..-+.+|-+..+
T Consensus       105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~-pty~kAl~RRAeayek~ek  183 (271)
T KOG4234|consen  105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELN-PTYEKALERRAEAYEKMEK  183 (271)
T ss_pred             hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcC-chhHHHHHHHHHHHHhhhh
Confidence            34445555555555555444333 1    1233334444455555555555555555444 3333333344444545555


Q ss_pred             HHHHHHHHHHHHHCCCC
Q 045674          617 ADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       617 ~~~A~~~~~~~~~~~~~  633 (650)
                      +++|++-|+++++..|.
T Consensus       184 ~eealeDyKki~E~dPs  200 (271)
T KOG4234|consen  184 YEEALEDYKKILESDPS  200 (271)
T ss_pred             HHHHHHHHHHHHHhCcc
Confidence            55555555555554444

>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]

Probab=96.19  E-value=0.33  Score=42.01  Aligned_cols=182  Identities=15%  Similarity=0.078  Sum_probs=110.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA  516 (650)
Q Consensus       437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  516 (650)
                      |-..|-++-|.--|.+.+... |.-+.+||.++--+...|+++.|.+.|+...+.++.-+-...|.-+. +.-.|++.-|
T Consensus        75 YDSlGL~~LAR~DftQaLai~-P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~-~YY~gR~~LA  152 (297)
T COG4785          75 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIA-LYYGGRYKLA  152 (297)
T ss_pred             hhhhhHHHHHhhhhhhhhhcC-CCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhcccee-eeecCchHhh
Confidence            333444555555556655543 55678899999999999999999999999999865544444443333 3457999999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHH--hcCCHHHHHHHH-HHHhhCCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHH
Q 045674          517 LKLWDMMIDKGITPTAASFRALSIGLC--LSGKVARACKIL-DELAPKGIIPETAFED-MITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~--~~g~~~~A~~~~-~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      .+-+...-+.++. |+  |.. +|.|.  ..-+..+|..-+ +++...   +.+-|.. ++..|.  |+..+ ..+++++
T Consensus       153 q~d~~~fYQ~D~~-DP--fR~-LWLYl~E~k~dP~~A~tnL~qR~~~~---d~e~WG~~iV~~yL--gkiS~-e~l~~~~  222 (297)
T COG4785         153 QDDLLAFYQDDPN-DP--FRS-LWLYLNEQKLDPKQAKTNLKQRAEKS---DKEQWGWNIVEFYL--GKISE-ETLMERL  222 (297)
T ss_pred             HHHHHHHHhcCCC-Ch--HHH-HHHHHHHhhCCHHHHHHHHHHHHHhc---cHhhhhHHHHHHHH--hhccH-HHHHHHH
Confidence            8888777765443 32  222 23332  234566666544 444433   3333332 222222  22221 2223333


Q ss_pred             HHcCCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          593 VDREREIP-------GKIRTALINALRKAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       593 ~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  631 (650)
                      ..-. ..+       .++|..++.-+...|+.++|..+|+-++..+
T Consensus       223 ~a~a-~~n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaiann  267 (297)
T COG4785         223 KADA-TDNTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVANN  267 (297)
T ss_pred             Hhhc-cchHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHh
Confidence            3221 222       3577788889999999999999999887653

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=96.18  E-value=0.0064  Score=35.63  Aligned_cols=33  Identities=15%  Similarity=0.130  Sum_probs=29.6

Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          589 ADGIVDREREIPGKIRTALINALRKAGNADLAIK  622 (650)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  622 (650)
                      |+++++.+ |.+..+|..++.+|...|++++|++
T Consensus         2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~~   34 (34)
T PF13431_consen    2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAIA   34 (34)
T ss_pred             hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhcC
Confidence            67788887 8899999999999999999999973

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.18  E-value=0.81  Score=40.25  Aligned_cols=124  Identities=10%  Similarity=0.025  Sum_probs=54.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHC--CCCCCH---HHHHHHHH
Q 045674          472 LAKCGKLDEALALFKRMEDEGCD-----QTVYTYTILINGMFK-EHRNEEALKLWDMMIDK--GITPTA---ASFRALSI  540 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~--~~~p~~---~~~~~l~~  540 (650)
                      +.+.++.++|...++..++.-..     .-...+..+...|-. ..++++|+..|+..-+.  |-+.+.   ..+..++.
T Consensus        83 cykk~~~~eAv~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~  162 (288)
T KOG1586|consen   83 CYKKVDPEEAVNCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQ  162 (288)
T ss_pred             HhhccChHHHHHHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHH
Confidence            34455777777777766553110     001111223333332 24566666666665532  111111   12222333


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          541 GLCLSGKVARACKILDELAPKGIIPE-------TAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .-...+++.+|+++|+++......+.       ..+..-+-|+.-.++.-.+...+++..+.
T Consensus       163 yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~  224 (288)
T KOG1586|consen  163 YAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQEL  224 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhc
Confidence            33455666666666666655433321       12222333333334444455555555544

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=96.01  E-value=0.28  Score=40.63  Aligned_cols=119  Identities=18%  Similarity=0.072  Sum_probs=73.4

Q ss_pred             HHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674          498 YTYTILINGM---FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT  574 (650)
Q Consensus       498 ~~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  574 (650)
                      .+.+.|+..+   .+.++.+++..++..+.-..+. ....-..-++.+...|++.+|+.+|+++.+..+..+..-..++.
T Consensus         8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~   86 (160)
T PF09613_consen    8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLAL   86 (160)
T ss_pred             HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence            3445555443   4778999999999988876444 33333445667888999999999999988877666666666777


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          575 CLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      |+...|+.+- ..+-+++++.+  +|+.+.. ++..+....+...|.
T Consensus        87 CL~~~~D~~W-r~~A~evle~~--~d~~a~~-Lv~~Ll~~~~~~~a~  129 (160)
T PF09613_consen   87 CLYALGDPSW-RRYADEVLESG--ADPDARA-LVRALLARADLEPAH  129 (160)
T ss_pred             HHHHcCChHH-HHHHHHHHhcC--CChHHHH-HHHHHHHhccccchh
Confidence            7777776432 22333444443  3444433 333444444434433

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=95.98  E-value=1.5  Score=41.46  Aligned_cols=131  Identities=12%  Similarity=0.110  Sum_probs=74.6

Q ss_pred             HHHHHhcC-CHHHHHHHHHHHHHC--------CCCCCH-----HhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCC
Q 045674          364 IDSYAKLG-SMNEAINIFERMKYE--------GVEPDE-----VTYGVIISGLCKNERL---EEAMQYFEFCRANGVAVN  426 (650)
Q Consensus       364 ~~~~~~~~-~~~~A~~~~~~~~~~--------~~~p~~-----~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~  426 (650)
                      +......+ +++.|..++++..+.        ...++.     .++..++.+|...+..   ++|.++++.+....+. .
T Consensus        42 G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~  120 (278)
T PF08631_consen   42 GKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-K  120 (278)
T ss_pred             HHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-C
Confidence            33344445 777776666654322        122332     3566677778777664   4566666666555443 3


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH---HHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674          427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL---AKCGKLDEALALFKRMEDEGCDQTV  497 (650)
Q Consensus       427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~~~~~~~~  497 (650)
                      ..++..-+..+.+.++.+.+.+++.+|+..- .-....+...+..+   .. .....|...+..++...+.|..
T Consensus       121 ~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l~~i~~l~~-~~~~~a~~~ld~~l~~r~~~~~  192 (278)
T PF08631_consen  121 PEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSILHHIKQLAE-KSPELAAFCLDYLLLNRFKSSE  192 (278)
T ss_pred             cHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHHHHHHHHHh-hCcHHHHHHHHHHHHHHhCCCh
Confidence            4555566677777889999999999999862 21233344444433   33 2334566666666554444443

It is also involved in sporulation [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.94  E-value=0.81  Score=38.18  Aligned_cols=139  Identities=13%  Similarity=0.099  Sum_probs=87.4

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHH-HHHHH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVS-AANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLY-TYNFL  223 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l  223 (650)
                      +.+.|...+. +++.+..++|+.-|..+.+.|...-+. ....+.....+.|+...|+..|.++......|... -...|
T Consensus        58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARl  136 (221)
T COG4649          58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARL  136 (221)
T ss_pred             chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHH
Confidence            4445543333 456677788888888888776443222 23344455677788888888888887664444333 11111


Q ss_pred             --HHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCC
Q 045674          224 --MNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQP  285 (650)
Q Consensus       224 --l~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  285 (650)
                        .-.++..|.++......+.+...+-+.-...-..|.-.-.+.|++.+|...|..+......|
T Consensus       137 raa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         137 RAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence              12356778888888887777655434345556667777778888888888888877643333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.90  E-value=2.8  Score=44.06  Aligned_cols=46  Identities=13%  Similarity=0.104  Sum_probs=20.9

Q ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc----CCHHHHHHHHHHHHHc
Q 045674          548 VARACKILDELAPKGIIPETAFEDMITCLCKT----GRIKEACKLADGIVDR  595 (650)
Q Consensus       548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~  595 (650)
                      ...+...+.++...|  +......++++|..-    .+++.|...|..+.+.
T Consensus       455 ~~~~~~~~~~a~~~g--~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~  504 (552)
T KOG1550|consen  455 LERAFSLYSRAAAQG--NADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQ  504 (552)
T ss_pred             hhHHHHHHHHHHhcc--CHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHh
Confidence            334444444444332  344444444444332    2355555555555543

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=95.86  E-value=1.8  Score=41.51  Aligned_cols=109  Identities=18%  Similarity=0.147  Sum_probs=72.4

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALA  473 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  473 (650)
                      +.+..+.-+...|+...|.++-.+.   .+ |+...|...+.+++..++|++-.++...   +   ..+..|..++..+.
T Consensus       179 Sl~~Ti~~li~~~~~k~A~kl~k~F---kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~~~  248 (319)
T PF04840_consen  179 SLNDTIRKLIEMGQEKQAEKLKKEF---KV-PDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEACL  248 (319)
T ss_pred             CHHHHHHHHHHCCCHHHHHHHHHHc---CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHHHH
Confidence            4445555666777777776665443   22 4777888888888888888876654322   1   24466777888888


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDM  522 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  522 (650)
                      +.|+..+|..+..++     . +    ..-+..|.+.|++.+|.+.-.+
T Consensus       249 ~~~~~~eA~~yI~k~-----~-~----~~rv~~y~~~~~~~~A~~~A~~  287 (319)
T PF04840_consen  249 KYGNKKEASKYIPKI-----P-D----EERVEMYLKCGDYKEAAQEAFK  287 (319)
T ss_pred             HCCCHHHHHHHHHhC-----C-h----HHHHHHHHHCCCHHHHHHHHHH
Confidence            888888888777662     1 1    3345667788888888766444

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=95.80  E-value=0.92  Score=47.60  Aligned_cols=143  Identities=18%  Similarity=0.146  Sum_probs=69.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHHcCCHHHHHHHHHHHHH-------cCCCCCHHHHHHHHHHHHHc
Q 045674          408 LEEAMQYFEFCRANGVAVNAMFYSSLIDG-----LGKAGRVDEAEELFEEMVE-------KGCPRDSYCYNVLIDALAKC  475 (650)
Q Consensus       408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-----~~~~~~~~~A~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~  475 (650)
                      ...+.++++...+.|.   ...-..++.+     +....|.+.|+..|+.+.+       ++   ++...+.+..+|.+.
T Consensus       228 ~~~a~~~~~~~a~~g~---~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g  301 (552)
T KOG1550|consen  228 LSEAFKYYREAAKLGH---SEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQG  301 (552)
T ss_pred             hhHHHHHHHHHHhhcc---hHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcC
Confidence            4567777777766652   2222222222     2344677777777777766       33   233445555555553


Q ss_pred             C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----
Q 045674          476 G-----KLDEALALFKRMEDEGCDQTVYTYTILINGMFK---EHRNEEALKLWDMMIDKGITPTAASFRALSIGLC----  543 (650)
Q Consensus       476 g-----~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~----  543 (650)
                      .     +.+.|..++.+.-+.|.. +...+  ++..+..   ..+...|.++|..+.+.|..   ..+..++.+|.    
T Consensus       302 ~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~---~A~~~la~~y~~G~g  375 (552)
T KOG1550|consen  302 LGVEKIDYEKALKLYTKAAELGNP-DAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHI---LAIYRLALCYELGLG  375 (552)
T ss_pred             CCCccccHHHHHHHHHHHHhcCCc-hHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCCh---HHHHHHHHHHHhCCC
Confidence            2     445566666665555432 33222  2222221   12345666666666555432   22222222221    


Q ss_pred             hcCCHHHHHHHHHHHhhCC
Q 045674          544 LSGKVARACKILDELAPKG  562 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~  562 (650)
                      ...+...|..++.++.+.+
T Consensus       376 v~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  376 VERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             cCCCHHHHHHHHHHHHHcc
Confidence            1224555666666665555

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=95.76  E-value=0.89  Score=44.56  Aligned_cols=109  Identities=11%  Similarity=0.028  Sum_probs=63.8

Q ss_pred             HHHHHcCCHHHHHHHHHHHHH---cCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-------CCCCCC---
Q 045674          470 DALAKCGKLDEALALFKRMED---EGCDQ-----TVYTYTILINGMFKEHRNEEALKLWDMMID-------KGITPT---  531 (650)
Q Consensus       470 ~~~~~~g~~~~A~~~~~~~~~---~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-------~~~~p~---  531 (650)
                      +.+.-.|++.+|.+++...--   .|...     ....||.|+..+.+.|.+.-+..+|.++++       .|+.|.   
T Consensus       248 q~eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~  327 (696)
T KOG2471|consen  248 QLEYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTF  327 (696)
T ss_pred             HHHHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcce
Confidence            345556777777777654421   12111     222346666666677777777777766663       343332   


Q ss_pred             -------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          532 -------AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       532 -------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                             ...+...+-.|...|+.-.|.+.|.++......++..|..+++++..
T Consensus       328 tls~nks~eilYNcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCim  381 (696)
T KOG2471|consen  328 TLSQNKSMEILYNCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIM  381 (696)
T ss_pred             ehhcccchhhHHhhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence                   12233445556677777777777777776655577777777777653

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.76  E-value=3.9  Score=45.13  Aligned_cols=273  Identities=20%  Similarity=0.228  Sum_probs=138.3

Q ss_pred             HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHH
Q 045674          271 AMEKFRAMEARNVQPDKITYMTLIQACYLEG--DFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESM  348 (650)
Q Consensus       271 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  348 (650)
                      ..+.++....+. .|+ .-...++..|.+.+  ..+.++....+......  ...+-.. +..++   -+..+..+|+.+
T Consensus       776 vc~~vr~~l~~~-~~~-~~~~~ilTs~vk~~~~~ie~aL~kI~~l~~~~~--~~~ad~a-l~hll---~Lvdvn~lfn~A  847 (1265)
T KOG1920|consen  776 VCDAVRNALERR-APD-KFNLFILTSYVKSNPPEIEEALQKIKELQLAQV--AVSADEA-LKHLL---FLVDVNELFNSA  847 (1265)
T ss_pred             HHHHHHHHHhhc-Ccc-hhhHHHHHHHHhcCcHHHHHHHHHHHHHHhccc--chhHHHH-HHHHH---hhccHHHHHHhh
Confidence            334444444332 444 34456777888777  67777777766664211  1111111 11111   112233333333


Q ss_pred             HHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH
Q 045674          349 IRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM  428 (650)
Q Consensus       349 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~  428 (650)
                      +.. +  |..  .+++-+...+.|+.+-+-+++++.+.  .++..-|.  |+  ...++++.|+..+..+.       ..
T Consensus       848 Lgt-Y--Dl~--Lal~VAq~SqkDPkEyLP~L~el~~m--~~~~rkF~--ID--~~L~ry~~AL~hLs~~~-------~~  909 (1265)
T KOG1920|consen  848 LGT-Y--DLD--LALLVAQKSQKDPKEYLPFLNELKKM--ETLLRKFK--ID--DYLKRYEDALSHLSECG-------ET  909 (1265)
T ss_pred             hcc-c--chH--HHHHHHHHhccChHHHHHHHHHHhhc--hhhhhhee--HH--HHHHHHHHHHHHHHHcC-------cc
Confidence            321 0  110  12333444566777777777766632  22211111  11  12356666666665543       11


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF  508 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (650)
                      .|.-.++.--+.+-+++|+.++..-.+.    -..+|...+..+...+.+++|.-.|+..-+.         ..-+.+|.
T Consensus       910 ~~~e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gkl---------ekAl~a~~  976 (1265)
T KOG1920|consen  910 YFPECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGKL---------EKALKAYK  976 (1265)
T ss_pred             ccHHHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhccH---------HHHHHHHH
Confidence            2333444445566677776665322221    1234455555566677777777777654321         22355677


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAA--SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      ..|+|.+|+.+..++...   -+..  +-..|+.-+...|+.-+|.+++.+....   ...    .+..||+...|++|+
T Consensus       977 ~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~~~----av~ll~ka~~~~eAl 1046 (1265)
T KOG1920|consen  977 ECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---PEE----AVALLCKAKEWEEAL 1046 (1265)
T ss_pred             HhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---HHH----HHHHHhhHhHHHHHH
Confidence            788888888877766431   1211  1245566667778888888777776543   222    334456666777777


Q ss_pred             HHHHHH
Q 045674          587 KLADGI  592 (650)
Q Consensus       587 ~~~~~~  592 (650)
                      ++....
T Consensus      1047 rva~~~ 1052 (1265)
T KOG1920|consen 1047 RVASKA 1052 (1265)
T ss_pred             HHHHhc
Confidence            766554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.66  E-value=0.14  Score=51.39  Aligned_cols=155  Identities=16%  Similarity=0.140  Sum_probs=80.2

Q ss_pred             CCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674          123 VSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL  202 (650)
Q Consensus       123 ~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  202 (650)
                      ..++.+.+++...--...+..  +..-.+.++..+-+.|-.+.|+.+...-.            .-.....+.|+++.|.
T Consensus       273 ~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~  338 (443)
T PF04053_consen  273 LRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIAL  338 (443)
T ss_dssp             HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHH
T ss_pred             HcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHH
Confidence            345666655555422211111  23445667777777777777766543321            1122334566766666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC
Q 045674          203 WVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARN  282 (650)
Q Consensus       203 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  282 (650)
                      ++.++.      .+...|..|.....+.|+++-|++.|++..         -|..|+-.|.-.|+.++-.++.+.....|
T Consensus       339 ~~a~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~---------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~  403 (443)
T PF04053_consen  339 EIAKEL------DDPEKWKQLGDEALRQGNIELAEECYQKAK---------DFSGLLLLYSSTGDREKLSKLAKIAEERG  403 (443)
T ss_dssp             HHCCCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred             HHHHhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc---------CccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence            654432      255667777777777777777777776554         23455556666677766666666666554


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          283 VQPDKITYMTLIQACYLEGDFDSCLSLYHE  312 (650)
Q Consensus       283 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  312 (650)
                      -      ++....++...|+.+++.+++.+
T Consensus       404 ~------~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  404 D------INIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence            1      33444455556677766666654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=95.64  E-value=0.48  Score=47.66  Aligned_cols=27  Identities=15%  Similarity=0.231  Sum_probs=12.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          357 VAIYTALIDSYAKLGSMNEAINIFERM  383 (650)
Q Consensus       357 ~~~~~~l~~~~~~~~~~~~A~~~~~~~  383 (650)
                      ...|..|.....+.|+++-|.+.|.+.
T Consensus       347 ~~~W~~Lg~~AL~~g~~~lAe~c~~k~  373 (443)
T PF04053_consen  347 PEKWKQLGDEALRQGNIELAEECYQKA  373 (443)
T ss_dssp             HHHHHHHHHHHHHTTBHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHhh
Confidence            334444444444444444444444443

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.62  E-value=4.7  Score=44.55  Aligned_cols=138  Identities=18%  Similarity=0.159  Sum_probs=76.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      ...+.-.++|.+.+|+.++..=.+.    -...|.+...-+...+.+++|.-+|+..-+         ....+.+|..+|
T Consensus       913 e~~n~I~kh~Ly~~aL~ly~~~~e~----~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~  979 (1265)
T KOG1920|consen  913 ECKNYIKKHGLYDEALALYKPDSEK----QKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECG  979 (1265)
T ss_pred             HHHHHHHhcccchhhhheeccCHHH----HHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhc
Confidence            3344445566666666655321111    222344444444566777777766665422         112345666778


Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      ++.+|+.+..++..-.-.-......|+.-+...+++-+|-++..+....   + .    .....|++...|++|+.+..
T Consensus       980 dWr~~l~~a~ql~~~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd---~-~----~av~ll~ka~~~~eAlrva~ 1050 (1265)
T KOG1920|consen  980 DWREALSLAAQLSEGKDELVILAEELVSRLVEQRKHYEAAKILLEYLSD---P-E----EAVALLCKAKEWEEALRVAS 1050 (1265)
T ss_pred             cHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC---H-H----HHHHHHhhHhHHHHHHHHHH
Confidence            8888887776664321112223367888888999999998888887632   1 1    12233455556666655543

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=95.58  E-value=7.4  Score=46.56  Aligned_cols=322  Identities=12%  Similarity=0.107  Sum_probs=156.4

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674          257 TMIKGYCKVGKTQKAMEKFRAMEARNV--QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK  334 (650)
Q Consensus       257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  334 (650)
                      ++..+-.+++.+..|...++.-.....  ......+..+...|...+++|....+...-..     +.. ...-+.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a-----~~s-l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA-----DPS-LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc-----Ccc-HHHHHHHHHh
Confidence            455566677888888888887311100  11123334444478888888887777664111     111 2334445667


Q ss_pred             cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH-HHHHHHHhcCCHHHHHH
Q 045674          335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG-VIISGLCKNERLEEAMQ  413 (650)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g~~~~a~~  413 (650)
                      .|++..|...|+.+.+.+. +...+++-++......|.+...+...+-.... ..+....++ .-..+-.+.++++....
T Consensus      1462 ~g~~~da~~Cye~~~q~~p-~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQKDP-DKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hccHHHHHHHHHHhhcCCC-ccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            8888888888888887632 23555666666666667777776655554432 122222222 22333356666666655


Q ss_pred             HHHHHHHCCCCCCHHHHHH--HHHHHHHcC--CHHHHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHHcCCHHH
Q 045674          414 YFEFCRANGVAVNAMFYSS--LIDGLGKAG--RVDEAEELFEEMVEK--------GCPR-DSYCYNVLIDALAKCGKLDE  480 (650)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~~--~~~~A~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~g~~~~  480 (650)
                      .+.   ..    +..+|..  ++....+..  +.-.-.+..+.+.+.        ++.- -...|..++....-.. .+.
T Consensus      1540 ~l~---~~----n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~ 1611 (2382)
T KOG0890|consen 1540 YLS---DR----NIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LEN 1611 (2382)
T ss_pred             hhh---cc----cccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHH
Confidence            544   11    1111211  222222211  111111122222111        0000 0112222222221111 111


Q ss_pred             HHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH-HHHC----CCC-CCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          481 ALALFKRMED-EGCDQTVYTYTILINGMFKEHRNEEALKLWDM-MIDK----GIT-PTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       481 A~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~-~~~~----~~~-p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      -.+.+..... .....+...|..-+..-....+..+-+--+++ +...    +.. --..+|...++.....|.++.|..
T Consensus      1612 ~~~~l~~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~n 1691 (2382)
T KOG0890|consen 1612 SIEELKKVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQN 1691 (2382)
T ss_pred             HHHHhhccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHH
Confidence            1111111100 00011111222221111111111111111111 1121    111 134577788888888999999998


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .+-.+.+..  .+.++...+..++..|+...|+.++++.++..
T Consensus      1692 all~A~e~r--~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~ 1732 (2382)
T KOG0890|consen 1692 ALLNAKESR--LPEIVLERAKLLWQTGDELNALSVLQEILSKN 1732 (2382)
T ss_pred             HHHhhhhcc--cchHHHHHHHHHHhhccHHHHHHHHHHHHHhh
Confidence            888887765  67778888889999999999999999988765

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.35  E-value=1.3  Score=36.59  Aligned_cols=123  Identities=14%  Similarity=0.098  Sum_probs=55.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK  547 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  547 (650)
                      ++..+...+.......+++.+...+. .+...++.++..|++.+ ..+.++.++.   .   .+......++..|.+.+.
T Consensus        13 vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~---~---~~~yd~~~~~~~c~~~~l   84 (140)
T smart00299       13 VVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN---K---SNHYDIEKVGKLCEKAKL   84 (140)
T ss_pred             HHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh---c---cccCCHHHHHHHHHHcCc
Confidence            34444444555555555555555443 34445555555555432 2333333331   0   111122234444555555


Q ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          548 VARACKILDELAPKGIIPETAFEDMITCLCKT-GRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      ++++.-++.++-.    ...+    +..+... ++++.|++++++      ..++..|..++..+.
T Consensus        85 ~~~~~~l~~k~~~----~~~A----l~~~l~~~~d~~~a~~~~~~------~~~~~lw~~~~~~~l  136 (140)
T smart00299       85 YEEAVELYKKDGN----FKDA----IVTLIEHLGNYEKAIEYFVK------QNNPELWAEVLKALL  136 (140)
T ss_pred             HHHHHHHHHhhcC----HHHH----HHHHHHcccCHHHHHHHHHh------CCCHHHHHHHHHHHH
Confidence            5555555544421    1111    1122222 566666666554      234555666655544

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=95.35  E-value=4.9  Score=43.05  Aligned_cols=68  Identities=13%  Similarity=-0.038  Sum_probs=42.7

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCC-CC-------CHHHHHHHHHHHHhcCCHHHHHHHHH--------HHHHCCCCCh
Q 045674          572 MITCLCKTGRIKEACKLADGIVDRER-EI-------PGKIRTALINALRKAGNADLAIKLMH--------SKIGVGYDRM  635 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~~~~~~~  635 (650)
                      .+...+-.|++..|....+.+.+... .|       .+.++...+-.+...|+.+.|...|.        .+..++..++
T Consensus       367 ~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~~~~~~~~~~~~~~~~~~E  446 (608)
T PF10345_consen  367 QIWCNFIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQKPRFLLCEAANRKSKFRE  446 (608)
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHhhhHHhhhhhhccCCcchH
Confidence            34445677888888888887775421 11       13344445555667789999999997        5555555555


Q ss_pred             hhhh
Q 045674          636 GSIK  639 (650)
Q Consensus       636 ~~~~  639 (650)
                      ..+.
T Consensus       447 l~il  450 (608)
T PF10345_consen  447 LYIL  450 (608)
T ss_pred             HHHH
Confidence            4443

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=95.34  E-value=3.3  Score=41.09  Aligned_cols=179  Identities=15%  Similarity=0.066  Sum_probs=98.3

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLID  470 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  470 (650)
                      |......++..+.....+.-...+..++...|-  +...|..++++|... .-++-..+++++++.+ ..|...-..|+.
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~d-fnDvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYD-FNDVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhc-chhHHHHHHHHH
Confidence            445566666667666666667777777776542  555666777777766 4466677777777764 344444555555


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHh
Q 045674          471 ALAKCGKLDEALALFKRMEDEGCD-----QTVYTYTILINGMFKEHRNEEALKLWDMMID-KGITPTAASFRALSIGLCL  544 (650)
Q Consensus       471 ~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~  544 (650)
                      .|.+ ++...+...|.++...-++     .-...|..|...  -..+.+..+.+..++.. .|-.--...+..+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~--i~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPEL--IGDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHh--ccccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            5554 6666777777766554221     011233333321  13455555555555553 2222223333344445555


Q ss_pred             cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          545 SGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ..++.+|++++..+.+++-.+..+...++..+
T Consensus       218 ~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~l  249 (711)
T COG1747         218 NENWTEAIRILKHILEHDEKDVWARKEIIENL  249 (711)
T ss_pred             ccCHHHHHHHHHHHhhhcchhhhHHHHHHHHH
Confidence            66666666666666665544544444444443

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.29  E-value=0.19  Score=42.35  Aligned_cols=77  Identities=12%  Similarity=0.028  Sum_probs=46.9

Q ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          548 VARACKILDELAPKGIIPETAFEDMITCLCKTG-----------RIKEACKLADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      +++|+.-|++++..+|....++.+++.+|...+           .+++|.+.|+++...  .|+...|+.-+...     
T Consensus        51 iedAisK~eeAL~I~P~~hdAlw~lGnA~ts~A~l~~d~~~A~~~F~kA~~~FqkAv~~--~P~ne~Y~ksLe~~-----  123 (186)
T PF06552_consen   51 IEDAISKFEEALKINPNKHDALWCLGNAYTSLAFLTPDTAEAEEYFEKATEYFQKAVDE--DPNNELYRKSLEMA-----  123 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHH---TT-HHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHhc--CCCcHHHHHHHHHH-----
Confidence            455666666677777777777888887776544           266677777777766  47767666555443     


Q ss_pred             HHHHHHHHHHHHHCCC
Q 045674          617 ADLAIKLMHSKIGVGY  632 (650)
Q Consensus       617 ~~~A~~~~~~~~~~~~  632 (650)
                       .+|=++..++.+.+.
T Consensus       124 -~kap~lh~e~~~~~~  138 (186)
T PF06552_consen  124 -AKAPELHMEIHKQGL  138 (186)
T ss_dssp             -HTHHHHHHHHHHSSS
T ss_pred             -HhhHHHHHHHHHHHh
Confidence             345556666655543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=95.12  E-value=2.8  Score=40.57  Aligned_cols=119  Identities=12%  Similarity=0.056  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 045674          514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK---TGRIKEACKLAD  590 (650)
Q Consensus       514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~  590 (650)
                      +.-+.+++++++.++. +...+..++..+.+..+.++..+-+++++...+.+..+|..++.....   .-.+++...+|.
T Consensus        48 E~klsilerAL~~np~-~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~~~~LW~~yL~~~q~~~~~f~v~~~~~~y~  126 (321)
T PF08424_consen   48 ERKLSILERALKHNPD-SERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPGSPELWREYLDFRQSNFASFTVSDVRDVYE  126 (321)
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHhccCcHHHHHHHHH
Confidence            3445566666655432 455555556666666666666666666666666666666665554443   223555555555


Q ss_pred             HHHHc------CC------CCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          591 GIVDR------ER------EIP-----GKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       591 ~~~~~------~~------~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ++++.      +.      .++     ..++..+...+.+.|..+.|..+++.+++.++-
T Consensus       127 ~~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~~  186 (321)
T PF08424_consen  127 KCLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNFF  186 (321)
T ss_pred             HHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHcC
Confidence            55432      10      000     123344555567889999999999999998773

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=95.10  E-value=3.3  Score=39.59  Aligned_cols=81  Identities=16%  Similarity=0.155  Sum_probs=41.3

Q ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----------
Q 045674          550 RACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINALRKAG----------  615 (650)
Q Consensus       550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----------  615 (650)
                      .|..++.++...+  +......++.+|..    ..+.++|...|+++.+.+.   ......+. .+...|          
T Consensus       173 ~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~---~~a~~~~~-~~~~~g~g~~~~~~~~  246 (292)
T COG0790         173 KALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD---GAACYNLG-LMYLNGEGVKKAAFLT  246 (292)
T ss_pred             hHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHH-HHHhcCCCchhhhhcc
Confidence            4555555555443  33444444444322    2245566666666655541   33333333 333333          


Q ss_pred             -----CHHHHHHHHHHHHHCCCCChh
Q 045674          616 -----NADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       616 -----~~~~A~~~~~~~~~~~~~~~~  636 (650)
                           +...|...+....+.|.....
T Consensus       247 ~~~~~~~~~a~~~~~~~~~~~~~~~~  272 (292)
T COG0790         247 AAKEEDKKQALEWLQKACELGFDNAC  272 (292)
T ss_pred             cccCCCHHHHHHHHHHHHHcCChhHH
Confidence                 667777777777777666433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=95.06  E-value=0.42  Score=38.40  Aligned_cols=48  Identities=21%  Similarity=0.327  Sum_probs=29.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHH
Q 045674          528 ITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITC  575 (650)
Q Consensus       528 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~  575 (650)
                      ..|+..++.+++.+|+..|++..|+++++...+..+.  +...|..|.+-
T Consensus        48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence            4566666666666666667777777766666654333  55556555443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins

Probab=95.04  E-value=0.17  Score=42.53  Aligned_cols=86  Identities=12%  Similarity=0.033  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-
Q 045674          548 VARACKILDELAPKGIIPETAFEDMITCLCKTGR----------IKEACKLADGIVDREREIPGKIRTALINALRKAGN-  616 (650)
Q Consensus       548 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  616 (650)
                      ++.|.+.++.....+|.|.+.++..+.++....+          +++|+.-|++++..+ |....++..++.+|...+. 
T Consensus         7 FE~ark~aea~y~~nP~DadnL~~WG~ALLELAqfk~g~es~~miedAisK~eeAL~I~-P~~hdAlw~lGnA~ts~A~l   85 (186)
T PF06552_consen    7 FEHARKKAEAAYAKNPLDADNLTNWGGALLELAQFKQGPESKKMIEDAISKFEEALKIN-PNKHDALWCLGNAYTSLAFL   85 (186)
T ss_dssp             HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHhHHHHHHHHHHHHHHHhccCcchHHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHHHhh
Confidence            4667777777777778888888777777765432          455666677777776 6667888889998877653 


Q ss_pred             ----------HHHHHHHHHHHHHCCCCC
Q 045674          617 ----------ADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       617 ----------~~~A~~~~~~~~~~~~~~  634 (650)
                                +++|...|+++.+..|..
T Consensus        86 ~~d~~~A~~~F~kA~~~FqkAv~~~P~n  113 (186)
T PF06552_consen   86 TPDTAEAEEYFEKATEYFQKAVDEDPNN  113 (186)
T ss_dssp             ---HHHHHHHHHHHHHHHHHHHHH-TT-
T ss_pred             cCChHHHHHHHHHHHHHHHHHHhcCCCc
Confidence                      566666666776665543

Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.04  E-value=0.071  Score=31.07  Aligned_cols=28  Identities=14%  Similarity=0.160  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++..++.++...|++++|++.++++++.
T Consensus         3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    3 AWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            3444455555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=95.03  E-value=0.066  Score=31.22  Aligned_cols=32  Identities=19%  Similarity=0.171  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          602 KIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+|..++.++...|++++|++.++++++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~   33 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPN   33 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcC
Confidence            56888999999999999999999999997664

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=95.03  E-value=0.65  Score=45.27  Aligned_cols=87  Identities=14%  Similarity=0.074  Sum_probs=34.8

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ...|.++.+...+....+. +.....+..+++....+.|++++|...-..|+...++ +++.....+-..-..|-++++.
T Consensus       334 ~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~  411 (831)
T PRK15180        334 SHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSY  411 (831)
T ss_pred             HHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHH
Confidence            3344444444444333221 1123333444444444444444444444444443333 3333222222222334444444


Q ss_pred             HHHHHHhhC
Q 045674          553 KILDELAPK  561 (650)
Q Consensus       553 ~~~~~~~~~  561 (650)
                      ..|++....
T Consensus       412 ~~wk~~~~~  420 (831)
T PRK15180        412 HYWKRVLLL  420 (831)
T ss_pred             HHHHHHhcc
Confidence            444444433

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=95.01  E-value=0.06  Score=32.03  Aligned_cols=28  Identities=18%  Similarity=0.265  Sum_probs=20.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          603 IRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       603 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      +|..++.+|.+.|++++|++++++++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~l   28 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALAL   28 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            3567788888888888888888886543

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.92  E-value=0.075  Score=31.03  Aligned_cols=28  Identities=14%  Similarity=0.209  Sum_probs=13.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      +|..++.++...|++++|+..|+++++.
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            3444455555555555555555554443

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=94.84  E-value=0.77  Score=36.91  Aligned_cols=78  Identities=12%  Similarity=0.232  Sum_probs=36.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHH---------------HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-C
Q 045674          359 IYTALIDSYAKLGSMNEAINIFERMK---------------YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN-G  422 (650)
Q Consensus       359 ~~~~l~~~~~~~~~~~~A~~~~~~~~---------------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~  422 (650)
                      ++..++.++++.|+.+....+++..-               .....|+..+..+++.+|+..|++..|.++++...+. +
T Consensus         4 ~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~   83 (126)
T PF12921_consen    4 LLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYP   83 (126)
T ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcC
Confidence            34445555555555555554444331               1123344555555555555555555555555444332 3


Q ss_pred             CCCCHHHHHHHHHH
Q 045674          423 VAVNAMFYSSLIDG  436 (650)
Q Consensus       423 ~~~~~~~~~~l~~~  436 (650)
                      ++.+..+|..|++-
T Consensus        84 I~i~~~~W~~Ll~W   97 (126)
T PF12921_consen   84 IPIPKEFWRRLLEW   97 (126)
T ss_pred             CCCCHHHHHHHHHH
Confidence            34444444444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]

Probab=94.66  E-value=0.2  Score=46.41  Aligned_cols=101  Identities=11%  Similarity=-0.084  Sum_probs=69.2

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS  545 (650)
Q Consensus       466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  545 (650)
                      -.-++-|.++|.+++|+..|...+...+. |.+++..-..+|.+.+++..|..-...++..+-. -...|..-+.+-...
T Consensus       101 KE~GN~yFKQgKy~EAIDCYs~~ia~~P~-NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~-Y~KAYSRR~~AR~~L  178 (536)
T KOG4648|consen  101 KERGNTYFKQGKYEEAIDCYSTAIAVYPH-NPVYHINRALAYLKQKSFAQAEEDCEAAIALDKL-YVKAYSRRMQARESL  178 (536)
T ss_pred             HHhhhhhhhccchhHHHHHhhhhhccCCC-CccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHH
Confidence            34577888999999999999888776332 7788888888888888888887766666653211 122344444444556


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHH
Q 045674          546 GKVARACKILDELAPKGIIPETA  568 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~  568 (650)
                      |+..+|.+-++.++...|.+.+.
T Consensus       179 g~~~EAKkD~E~vL~LEP~~~EL  201 (536)
T KOG4648|consen  179 GNNMEAKKDCETVLALEPKNIEL  201 (536)
T ss_pred             hhHHHHHHhHHHHHhhCcccHHH
Confidence            77777777777777776664443

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.66  E-value=0.43  Score=44.02  Aligned_cols=78  Identities=14%  Similarity=0.162  Sum_probs=58.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTAL  607 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l  607 (650)
                      .++..++..+...|+++.+.+.+++.....|.+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...+
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y  233 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY  233 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence            34556667777778888888888888888777888888888888888888888888877755     3666766666665


Q ss_pred             HHH
Q 045674          608 INA  610 (650)
Q Consensus       608 ~~~  610 (650)
                      ..+
T Consensus       234 ~~~  236 (280)
T COG3629         234 EEI  236 (280)
T ss_pred             HHH
Confidence            555

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=94.64  E-value=7.6  Score=41.65  Aligned_cols=259  Identities=16%  Similarity=0.062  Sum_probs=137.1

Q ss_pred             HHhcCChHHHHHHHHHHHHcCCCcCH-------HHHHHHHH-HHHhcCCHHHHHHHHHHHHHC----CCCCCHHhHHHHH
Q 045674          332 LCKVGKCIEGHAIFESMIRRGCQPNV-------AIYTALID-SYAKLGSMNEAINIFERMKYE----GVEPDEVTYGVII  399 (650)
Q Consensus       332 ~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~-~~~~~~~~~~A~~~~~~~~~~----~~~p~~~~~~~l~  399 (650)
                      .....++++|..++.++...-..|+.       ..++.+-. .....|++++|+++-+.....    ...+....+..+.
T Consensus       425 ~~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~  504 (894)
T COG2909         425 LASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLG  504 (894)
T ss_pred             HHHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhh
Confidence            34578899999988888765222221       13333322 334578899999888777653    2233455667777


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH---H--HHHHHHcCCHH--HHHHHHHHHHHc---CCCC---CHHHHH
Q 045674          400 SGLCKNERLEEAMQYFEFCRANGVAVNAMFYSS---L--IDGLGKAGRVD--EAEELFEEMVEK---GCPR---DSYCYN  466 (650)
Q Consensus       400 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~---l--~~~~~~~~~~~--~A~~~~~~~~~~---~~~~---~~~~~~  466 (650)
                      .+..-.|++++|..+.....+..-..+...+..   +  ...+...|+..  +....|......   ..+.   -..+..
T Consensus       505 ~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~  584 (894)
T COG2909         505 EAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRA  584 (894)
T ss_pred             HHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHH
Confidence            778889999999998876655422223333322   2  23355566332  333333333222   1111   123334


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHH----HHcCCCCCHHHHH--HHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHHHH
Q 045674          467 VLIDALAKCGKLDEALALFKRM----EDEGCDQTVYTYT--ILINGMFKEHRNEEALKLWDMMIDKGIT----PTAASFR  536 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~~~--~l~~~~~~~~~~~~A~~~~~~~~~~~~~----p~~~~~~  536 (650)
                      .+..++.+   ++.+..-...-    ......|-...+.  .|+......|+.++|...++++......    ++..+-.
T Consensus       585 ~ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~  661 (894)
T COG2909         585 QLLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAA  661 (894)
T ss_pred             HHHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence            44444444   44333333222    2222222222222  5677778899999999999998854222    2322222


Q ss_pred             HHHHH--HHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          537 ALSIG--LCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       537 ~l~~~--~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      ..+..  ....|+.++|..++.+-..-+..    ....+..+...-...|-..+|.......-
T Consensus       662 ~~v~~~lwl~qg~~~~a~~~l~~s~~~~~~~~~~~~~~~r~i~~~~~~Lg~~~eae~al~~l~  724 (894)
T COG2909         662 YKVKLILWLAQGDKELAAEWLLKSGDPDKANAHFPQLQWRLIAREQILLGILLEAELALDELA  724 (894)
T ss_pred             HHhhHHHhcccCCHHHHHHHHHhccCchhhhhhcccccccccchHHHHHhhhhHHHHHHHHHh
Confidence            22222  34678999998888774432211    12223333333334444455554444443

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=94.63  E-value=0.082  Score=31.42  Aligned_cols=27  Identities=11%  Similarity=0.181  Sum_probs=21.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      ++..|+.+|.+.|++++|+++|++++.
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~   27 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQALA   27 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            367788999999999999999998653

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=94.63  E-value=3.1  Score=37.09  Aligned_cols=208  Identities=9%  Similarity=0.051  Sum_probs=105.0

Q ss_pred             CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          146 NLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN  225 (650)
Q Consensus       146 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  225 (650)
                      -...|.....+|-..++|++|...+.+..+- ...+...|.+       ..-++.|.-+.+++.+.  .--+..|.--..
T Consensus        30 aas~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfhA-------AKayEqaamLake~~kl--sEvvdl~eKAs~   99 (308)
T KOG1585|consen   30 AASLYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFHA-------AKAYEQAAMLAKELSKL--SEVVDLYEKASE   99 (308)
T ss_pred             hHHHHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHHH-------HHHHHHHHHHHHHHHHh--HHHHHHHHHHHH
Confidence            4556777788888888999888888777642 1223333321       23345555555555542  223344555566


Q ss_pred             HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC---C--CCCCHHHHHHHHHHHHhc
Q 045674          226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEAR---N--VQPDKITYMTLIQACYLE  300 (650)
Q Consensus       226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~~~~l~~~~~~~  300 (650)
                      .|...|..+.|-..+++.-+                ..+.-++++|+++|++....   +  ...-...+....+.+.+.
T Consensus       100 lY~E~GspdtAAmaleKAak----------------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl  163 (308)
T KOG1585|consen  100 LYVECGSPDTAAMALEKAAK----------------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRL  163 (308)
T ss_pred             HHHHhCCcchHHHHHHHHHH----------------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhh
Confidence            77788877777666665542                12233445555555543321   0  001112333444556666


Q ss_pred             CCHHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCC---CcCHHHHHHHHHHHHhcCC
Q 045674          301 GDFDSCLSLYHEMDEKG-----IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC---QPNVAIYTALIDSYAKLGS  372 (650)
Q Consensus       301 ~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~  372 (650)
                      ..+++|-..+.+-....     ....-..|...|-.+.-..++..|...++.-.+.+-   .-+..+...|+.+| ..|+
T Consensus       164 ~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD  242 (308)
T KOG1585|consen  164 EKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGD  242 (308)
T ss_pred             HHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCC
Confidence            66666554443322110     011112344444555555666667666665433211   11334455555554 3455


Q ss_pred             HHHHHHHH
Q 045674          373 MNEAINIF  380 (650)
Q Consensus       373 ~~~A~~~~  380 (650)
                      .+++.+++
T Consensus       243 ~E~~~kvl  250 (308)
T KOG1585|consen  243 IEEIKKVL  250 (308)
T ss_pred             HHHHHHHH
Confidence            55554443

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=94.56  E-value=0.92  Score=36.99  Aligned_cols=83  Identities=18%  Similarity=0.092  Sum_probs=54.6

Q ss_pred             HHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          499 TYTILINGM---FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       499 ~~~~l~~~~---~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      ..+.|+...   ...++++++..+++.|.-..++ ....-..-++.+...|++.+|..+|+++.+.++..+..-..++.|
T Consensus         9 iv~gLi~~~~~aL~~~d~~D~e~lLdALrvLrP~-~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~C   87 (153)
T TIGR02561         9 LLGGLIEVLMYALRSADPYDAQAMLDALRVLRPN-LKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALC   87 (153)
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-ccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHH
Confidence            344454433   3578888888888888775444 223333445667888899999999988887765555555555666


Q ss_pred             HHHcCCH
Q 045674          576 LCKTGRI  582 (650)
Q Consensus       576 ~~~~g~~  582 (650)
                      +...|+.
T Consensus        88 L~al~Dp   94 (153)
T TIGR02561        88 LNAKGDA   94 (153)
T ss_pred             HHhcCCh
Confidence            6666653

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=94.38  E-value=2.5  Score=34.95  Aligned_cols=40  Identities=30%  Similarity=0.242  Sum_probs=17.7

Q ss_pred             HHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674          329 IGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK  369 (650)
Q Consensus       329 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (650)
                      +..+...+.......+++.+...+. .+...++.++..|++
T Consensus        14 v~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~   53 (140)
T smart00299       14 VELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAK   53 (140)
T ss_pred             HHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHH
Confidence            3333334444444444444444432 334444445555543

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.30  E-value=0.6  Score=43.12  Aligned_cols=78  Identities=21%  Similarity=0.248  Sum_probs=52.9

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 045674          148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKE-----NGIEPSLYTYNF  222 (650)
Q Consensus       148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~~~~  222 (650)
                      .++..++..+...|+++.+...++++.... +.+...|..++.+|.+.|+...|+..|+++.+     .|+.|...+...
T Consensus       154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~  232 (280)
T COG3629         154 KALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL  232 (280)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence            345567777777777777777777777765 66777777777777777777777777777655     355555554444


Q ss_pred             HHHH
Q 045674          223 LMNG  226 (650)
Q Consensus       223 ll~~  226 (650)
                      ....
T Consensus       233 y~~~  236 (280)
T COG3629         233 YEEI  236 (280)
T ss_pred             HHHH
Confidence            4333

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=94.18  E-value=6.8  Score=41.80  Aligned_cols=43  Identities=16%  Similarity=0.155  Sum_probs=22.2

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 045674          257 TMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLE  300 (650)
Q Consensus       257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  300 (650)
                      .+|-.+.++|++++|.++..+.... .......+...+..|...
T Consensus       116 a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  116 ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTT
T ss_pred             HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhC
Confidence            4555666777777777776444332 223334455555555543

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=94.16  E-value=0.11  Score=30.28  Aligned_cols=31  Identities=16%  Similarity=0.145  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          602 KIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      .+|..++.+|...|++++|+..++++++..+
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p   32 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALELDP   32 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHCc
Confidence            3566677777777777777777777776554

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=94.03  E-value=3.1  Score=34.71  Aligned_cols=53  Identities=15%  Similarity=0.019  Sum_probs=27.0

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      .+.++.+++..++..+.-..+. ....-..-+..+...|++.+|..+|+++.+.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~-~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPE-FPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            3456666666666666554322 1111111223345666666666666666544

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=93.89  E-value=6  Score=37.53  Aligned_cols=130  Identities=13%  Similarity=0.271  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh--cC----CHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCC--
Q 045674          374 NEAINIFERMKYEGVEPDEVTYGVIISGLCK--NE----RLEEAMQYFEFCRANGVAV---NAMFYSSLIDGLGKAGR--  442 (650)
Q Consensus       374 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~--~g----~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~~~~~~--  442 (650)
                      ++.+.+++.+.+.|+.-+..+|-+.......  ..    ....|..+|+.|++..+-.   +...+..++..  ..++  
T Consensus        79 ~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e  156 (297)
T PF13170_consen   79 KEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVE  156 (297)
T ss_pred             HHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHH
Confidence            3445566666666666655554443222222  11    2345666677776654322   22333333222  2222  


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          443 --VDEAEELFEEMVEKGCPRDSY--CYNVLIDALAKCGK--LDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       443 --~~~A~~~~~~~~~~~~~~~~~--~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                        .+.+..+|+.+.+.|+..+-.  ....++........  ...+.++++.+.+.|++.....|..++-
T Consensus       157 ~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGl  225 (297)
T PF13170_consen  157 ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGL  225 (297)
T ss_pred             HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHH
Confidence              344555666666655443322  22222222111111  3355666666666666666555555443

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=93.89  E-value=7.2  Score=38.45  Aligned_cols=88  Identities=11%  Similarity=0.033  Sum_probs=43.1

Q ss_pred             HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHH
Q 045674          192 FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKA  271 (650)
Q Consensus       192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  271 (650)
                      +...|+++.+.+.+....+. +.....+...+++...+.|+++.|..+-+-|+...++ +......-....-..|-++++
T Consensus       333 ~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~  410 (831)
T PRK15180        333 FSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKS  410 (831)
T ss_pred             HHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHH
Confidence            34456666666555544333 2233445555566666666666666666655544332 222222222222333555666


Q ss_pred             HHHHHHHHhC
Q 045674          272 MEKFRAMEAR  281 (650)
Q Consensus       272 ~~~~~~~~~~  281 (650)
                      .-.++.+...
T Consensus       411 ~~~wk~~~~~  420 (831)
T PRK15180        411 YHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHhcc
Confidence            6666555443

>KOG2396 consensus HAT (Half-A-TPR) repeat-containing protein [General function prediction only]

Probab=93.53  E-value=8.8  Score=38.27  Aligned_cols=99  Identities=10%  Similarity=0.049  Sum_probs=64.9

Q ss_pred             CCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH--HcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          530 PTAASF-RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC--KTGRIKEACKLADGIVDREREIPGKIRTA  606 (650)
Q Consensus       530 p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  606 (650)
                      ++..++ +.+...+.+.|-+.+|...+..+....|.+-..+..+++.-.  ..-+...+.++|+.++..- ..|+..|..
T Consensus       457 ~~~~tl~s~~l~~~~e~~~~~~ark~y~~l~~lpp~sl~l~r~miq~e~~~~sc~l~~~r~~yd~a~~~f-g~d~~lw~~  535 (568)
T KOG2396|consen  457 ADSVTLKSKYLDWAYESGGYKKARKVYKSLQELPPFSLDLFRKMIQFEKEQESCNLANIREYYDRALREF-GADSDLWMD  535 (568)
T ss_pred             CceeehhHHHHHHHHHhcchHHHHHHHHHHHhCCCccHHHHHHHHHHHhhHhhcCchHHHHHHHHHHHHh-CCChHHHHH
Confidence            344433 345566667777888888888887775556666666655432  2223677777888777652 367777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 045674          607 LINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       607 l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      +...-..+|..+.+-.++.++.+
T Consensus       536 y~~~e~~~g~~en~~~~~~ra~k  558 (568)
T KOG2396|consen  536 YMKEELPLGRPENCGQIYWRAMK  558 (568)
T ss_pred             HHHhhccCCCcccccHHHHHHHH
Confidence            66666677887777777777665

>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]

Probab=93.47  E-value=7.3  Score=37.17  Aligned_cols=145  Identities=14%  Similarity=0.080  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----C--
Q 045674          443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE-----H--  511 (650)
Q Consensus       443 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~--  511 (650)
                      ..+|.++++.+.+.|   .......|...|..    ..+..+|...|+++.+.|..+...+...+...|..-     -  
T Consensus        93 ~~~A~~~~~~~a~~g---~~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~~~~~~  169 (292)
T COG0790          93 KTKAADWYRCAAADG---LAEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQALAVAY  169 (292)
T ss_pred             HHHHHHHHHHHhhcc---cHHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhhhcccH
Confidence            444555555444433   22233334444433    225555666666655554332211222333333221     1  


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-------
Q 045674          512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCKTG-------  580 (650)
Q Consensus       512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------  580 (650)
                      +...|...+.++...+   +......++..|..    ..+.++|..+|.++.+.+.  ......++ .+...|       
T Consensus       170 ~~~~A~~~~~~aa~~~---~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~  243 (292)
T COG0790         170 DDKKALYLYRKAAELG---NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAA  243 (292)
T ss_pred             HHHhHHHHHHHHHHhc---CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhh
Confidence            2246777777777665   44455555555533    2377888888888888765  55555555 555555       


Q ss_pred             --------CHHHHHHHHHHHHHcC
Q 045674          581 --------RIKEACKLADGIVDRE  596 (650)
Q Consensus       581 --------~~~~A~~~~~~~~~~~  596 (650)
                              +...|...+......+
T Consensus       244 ~~~~~~~~~~~~a~~~~~~~~~~~  267 (292)
T COG0790         244 FLTAAKEEDKKQALEWLQKACELG  267 (292)
T ss_pred             hcccccCCCHHHHHHHHHHHHHcC
Confidence                    5666666666666555

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=93.23  E-value=0.058  Score=49.96  Aligned_cols=124  Identities=11%  Similarity=-0.018  Sum_probs=85.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      ....|.+++|++.|...+..++ +....+..-..++.+.++...|++=+..+.+.+++...-|-.-+.+....|++++|.
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa  202 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA  202 (377)
T ss_pred             HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence            3456778888888888877643 355566666777778888888888888888887776666666666677778888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +.++.+.+.++.+....|  +-...-+.+..++-...+++..+....
T Consensus       203 ~dl~~a~kld~dE~~~a~--lKeV~p~a~ki~e~~~k~er~~~e~~~  247 (377)
T KOG1308|consen  203 HDLALACKLDYDEANSAT--LKEVFPNAGKIEEHRRKYERAREEREI  247 (377)
T ss_pred             HHHHHHHhccccHHHHHH--HHHhccchhhhhhchhHHHHHHHHhcc
Confidence            888888887755544433  344455566666666666666665443

>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.16  E-value=1.4  Score=39.18  Aligned_cols=65  Identities=14%  Similarity=0.020  Sum_probs=36.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+.++.+|+...|++-++++....++... +.+..+|..-+.+....=+..+|..-+.++++..+.
T Consensus       232 LllNy~QC~L~~~e~yevleh~seiL~~~-~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldps  296 (329)
T KOG0545|consen  232 LLLNYCQCLLKKEEYYEVLEHCSEILRHH-PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPS  296 (329)
T ss_pred             HHHhHHHHHhhHHHHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChh
Confidence            34445555555666666666666665554 445555555555555555556666666666655554

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.05  E-value=2  Score=37.21  Aligned_cols=95  Identities=13%  Similarity=-0.014  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHH--H-
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRT--A-  606 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~--~-  606 (650)
                      .+..++..|.+.|+.++|.+.|.++.+....   -.+++..++.+....|++..+...+.++...-... |....+  . 
T Consensus        38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~  117 (177)
T PF10602_consen   38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV  117 (177)
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence            3445566666666666666666666554333   23445556666666666666666665554331111 111111  1 


Q ss_pred             -HHHHHHhcCCHHHHHHHHHHHH
Q 045674          607 -LINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       607 -l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                       -+-.+...|++.+|-+.|-...
T Consensus       118 ~~gL~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  118 YEGLANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHHHHHhchHHHHHHHHHccC
Confidence             1222455677777766665543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=92.80  E-value=9  Score=36.36  Aligned_cols=120  Identities=18%  Similarity=0.264  Sum_probs=54.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCH
Q 045674          443 VDEAEELFEEMVEKGCPRDSYCYNVLIDALAK--CG----KLDEALALFKRMEDEGCD---QTVYTYTILINGMFKEHRN  513 (650)
Q Consensus       443 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g----~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~  513 (650)
                      +++.+.+++.+.+.|+..+..++.+.......  ..    ....|..+|+.|.+..+.   ++...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34455666666666666665544432222222  11    244566667777665332   333344444322  22222


Q ss_pred             ----HHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHhc--CCHHHHHHHHHHHhhCCCC
Q 045674          514 ----EEALKLWDMMIDKGITPTAA--SFRALSIGLCLS--GKVARACKILDELAPKGII  564 (650)
Q Consensus       514 ----~~A~~~~~~~~~~~~~p~~~--~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~  564 (650)
                          +.+..+|+.+.+.|+..+..  .+..++......  .....+.++++.+.+.+..
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~k  214 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVK  214 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCc
Confidence                44555566666555543322  111111111100  1134555666666666555

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=92.77  E-value=2  Score=34.25  Aligned_cols=68  Identities=15%  Similarity=0.129  Sum_probs=46.6

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhh-CCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          529 TPTAASFRALSIGLCLSGK---VARACKILDELAP-KGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       529 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .++..+-..++|++.+..+   ..+.+.+++.+.+ ..+. ..+....|+-++.+.|++++++++.+.+++..
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e  101 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE  101 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            5566777777888876654   4556677777775 3333 45566667777778888888888888777653

>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=92.71  E-value=6  Score=34.11  Aligned_cols=92  Identities=13%  Similarity=0.031  Sum_probs=66.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTA--ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      ...+...+++++|...++..+..-.+-+.  .+-..|++.....|.+++|+..++...+.+. .......-++++...|+
T Consensus        96 Ak~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg~  174 (207)
T COG2976          96 AKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKGD  174 (207)
T ss_pred             HHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcCc
Confidence            44567889999999998887753211111  1123456777889999999999988765432 23344557889999999


Q ss_pred             HHHHHHHHHHHHHcC
Q 045674          582 IKEACKLADGIVDRE  596 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~  596 (650)
                      -++|+.-|+++++.+
T Consensus       175 k~~Ar~ay~kAl~~~  189 (207)
T COG2976         175 KQEARAAYEKALESD  189 (207)
T ss_pred             hHHHHHHHHHHHHcc
Confidence            999999999999875

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=92.68  E-value=1.7  Score=37.59  Aligned_cols=63  Identities=10%  Similarity=0.036  Sum_probs=38.3

Q ss_pred             HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Q 045674          148 ECYISLIDCLALCGDVDRVRLVFNELKEKGFLM--TVSAANSLIKSFGGLGMVEELLWVWRSMKE  210 (650)
Q Consensus       148 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  210 (650)
                      ..+..++..|.+.|+.+.|.+.|.++.+....+  -...+..+++.....|++..+.....+...
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~  101 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAES  101 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            456667777777777777777777766542221  233455566666666666666666555543

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]

Probab=92.62  E-value=17  Score=39.17  Aligned_cols=222  Identities=11%  Similarity=0.011  Sum_probs=110.5

Q ss_pred             HcCCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHH-HHHhcCChhHHHHHHHHHhcC----CCCCChhhHHHHHH
Q 045674          193 GGLGMVEELLWVWRSMKENGIEPSLY-------TYNFLMN-GLVNSMFIESSELVFKVMENG----KVGPDVVTYNTMIK  260 (650)
Q Consensus       193 ~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~ll~-~~~~~~~~~~A~~~~~~~~~~----~~~~~~~~~~~l~~  260 (650)
                      ..+.++++|..+..++...-..|+..       .++.|-. .....|+++.|.++.+.....    ........+..+..
T Consensus       426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~  505 (894)
T COG2909         426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE  505 (894)
T ss_pred             HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence            45678888887777766542222211       2333322 234567788887777766542    22334556666777


Q ss_pred             HHHHcCChhHHHHHHHHHHhCCCCCCHHHHH---HH--HHHHHhcCC--HHHHHHHHHHHHHCC---CC---CCHHHHHH
Q 045674          261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYM---TL--IQACYLEGD--FDSCLSLYHEMDEKG---IE---IPSHAYNL  327 (650)
Q Consensus       261 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~---~l--~~~~~~~~~--~~~a~~~~~~~~~~~---~~---~~~~~~~~  327 (650)
                      +..-.|++++|..+.+...+..-.-+...+.   .+  ...+...|+  +.+.+..|.......   .+   +-..++..
T Consensus       506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~  585 (894)
T COG2909         506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ  585 (894)
T ss_pred             HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence            7777888888888877665532122332222   22  233445563  223333333332211   11   11223334


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHH----cCCCcCHH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC----CHHhHHH
Q 045674          328 VIGGLCKVGKCIEGHAIFESMIR----RGCQPNVA--IYTALIDSYAKLGSMNEAINIFERMKYEGVEP----DEVTYGV  397 (650)
Q Consensus       328 l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~--~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~  397 (650)
                      ++.++.+   ++.+..-.....+    ....|-..  .+..|+..+...|+.++|...+.++......+    +..+...
T Consensus       586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~  662 (894)
T COG2909         586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY  662 (894)
T ss_pred             HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence            4444444   3333222222222    21121111  22356777788889998888888876532222    2222222


Q ss_pred             HHHH--HHhcCCHHHHHHHHHH
Q 045674          398 IISG--LCKNERLEEAMQYFEF  417 (650)
Q Consensus       398 l~~~--~~~~g~~~~a~~~~~~  417 (650)
                      .+..  ....|+.+.+.....+
T Consensus       663 ~v~~~lwl~qg~~~~a~~~l~~  684 (894)
T COG2909         663 KVKLILWLAQGDKELAAEWLLK  684 (894)
T ss_pred             HhhHHHhcccCCHHHHHHHHHh
Confidence            2222  3346777777666654

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=92.55  E-value=0.25  Score=28.37  Aligned_cols=25  Identities=28%  Similarity=0.283  Sum_probs=12.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          606 ALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       606 ~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .++.++.+.|++++|++.++++++.
T Consensus         5 ~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    5 RLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3444444445555555555544443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=92.54  E-value=0.44  Score=47.63  Aligned_cols=98  Identities=11%  Similarity=-0.027  Sum_probs=59.7

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL  588 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  588 (650)
                      ..|+...|..++..+....+.-....+..++..+.+.|..-+|-.++.+.+......+-.+..++.++....+.+.|++.
T Consensus       619 ~~gn~~~a~~cl~~a~~~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~  698 (886)
T KOG4507|consen  619 AVGNSTFAIACLQRALNLAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEA  698 (886)
T ss_pred             ecCCcHHHHHHHHHHhccChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHH
Confidence            35666666666666654433333444556666666666666677777666665544555666666777777777777777


Q ss_pred             HHHHHHcCCCCCHHHHHHH
Q 045674          589 ADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~l  607 (650)
                      ++.++++. +.+.++-+.|
T Consensus       699 ~~~a~~~~-~~~~~~~~~l  716 (886)
T KOG4507|consen  699 FRQALKLT-TKCPECENSL  716 (886)
T ss_pred             HHHHHhcC-CCChhhHHHH
Confidence            77776664 4444444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=92.51  E-value=13  Score=37.32  Aligned_cols=179  Identities=12%  Similarity=0.127  Sum_probs=119.1

Q ss_pred             cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          355 PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLI  434 (650)
Q Consensus       355 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  434 (650)
                      .|....-+++..+.......-...+..+|..-|  .+...|..++.+|... .-+.-..+++++.+..+. |...-..|+
T Consensus        64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa  139 (711)
T COG1747          64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA  139 (711)
T ss_pred             ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence            355556677888887777777888888888753  3667788888888887 557788888888887665 555555566


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCC--C---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHH
Q 045674          435 DGLGKAGRVDEAEELFEEMVEKGCPR--D---SYCYNVLIDALAKCGKLDEALALFKRMEDE-GCDQTVYTYTILINGMF  508 (650)
Q Consensus       435 ~~~~~~~~~~~A~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~l~~~~~  508 (650)
                      ..|.+ ++.+.+...|..+...-++.  +   ...|..+...-  ..+.+....+..++... |..--...+.-+-.-|.
T Consensus       140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys  216 (711)
T COG1747         140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS  216 (711)
T ss_pred             HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence            65555 88888999998888763321  1   12444444321  35666667766666543 33334445555556677


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ...++.+|++++..+++..-. |...-..++.-
T Consensus       217 ~~eN~~eai~Ilk~il~~d~k-~~~ar~~~i~~  248 (711)
T COG1747         217 ENENWTEAIRILKHILEHDEK-DVWARKEIIEN  248 (711)
T ss_pred             cccCHHHHHHHHHHHhhhcch-hhhHHHHHHHH
Confidence            888999999999988876433 55544444443

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=92.40  E-value=1.3  Score=38.61  Aligned_cols=130  Identities=17%  Similarity=0.164  Sum_probs=70.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHH
Q 045674          501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLC  577 (650)
Q Consensus       501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~  577 (650)
                      +.-+..+.+.+...+|+...+.-++..+. |...-..+.+.++-.|++++|..-++-+....+.   ....|.+++.+-.
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPt-da~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ea   83 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPT-DAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRCEA   83 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCc-cccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHHHH
Confidence            34455666777778888777777765443 5555566777778888888888877777766555   3455666655422


Q ss_pred             HcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHH--HHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674          578 KTGRIKEACKLADGIVDRERE--IPGKIRTALINA--LRKAGNADLAIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~~~~~~~  637 (650)
                      ...      ++|.--..-++.  |.+.-...+..+  +...|.-+.+..+-+.+++.++.+.+.
T Consensus        84 ~R~------evfag~~~Pgflg~p~p~wva~L~aala~h~dg~gea~~alreqal~aa~~~iG~  141 (273)
T COG4455          84 ARN------EVFAGGAVPGFLGGPSPEWVAALLAALALHSDGAGEARTALREQALKAAPVPIGH  141 (273)
T ss_pred             HHH------HHhccCCCCCCcCCCCHHHHHHHHHHHhcccCCcchHHHHHHHHHHhhCCCCCcc
Confidence            111      112111111111  222222222222  223334455666667777777776554

>KOG2471 consensus TPR repeat-containing protein [General function prediction only]

Probab=92.23  E-value=6.8  Score=38.79  Aligned_cols=307  Identities=15%  Similarity=0.074  Sum_probs=159.8

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH--HHHHHHHHc----CC-------CcCHHHHH
Q 045674          295 QACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGH--AIFESMIRR----GC-------QPNVAIYT  361 (650)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~--~~~~~~~~~----~~-------~~~~~~~~  361 (650)
                      ..-...+.++.+.+.+..+...|.......++.-...|.+.|......  +-++.+...    |.       ......+.
T Consensus        25 ~~~f~~~~~d~cl~~l~~l~t~~~~~~~v~~n~av~~~~kt~~tq~~~ll~el~aL~~~~~~~~~~~~gld~~~~t~~~y  104 (696)
T KOG2471|consen   25 HEQFNNSEFDRCLELLQELETRGESSGPVLHNRAVVSYYKTGCTQHSVLLKELEALTADADAPGDVSSGLSLKQGTVMDY  104 (696)
T ss_pred             HhccCCcchHHHHHHHHHHHhccccccceeeehhhHHHHhcccchhHHHHHHHHHHHHhhccccchhcchhhhcchHHhh
Confidence            333457789999999999998887777777888888888888654332  222222111    10       01122222


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhH-----HHHHHHHHhcCCHHHHHHHHHHH---HHCC-CCC--CHHHH
Q 045674          362 ALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY-----GVIISGLCKNERLEEAMQYFEFC---RANG-VAV--NAMFY  430 (650)
Q Consensus       362 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~---~~~~-~~~--~~~~~  430 (650)
                      ...-+|.....+..|+++...+... ..|=...+     ......+......++|+.++.-+   ...+ ..+  +...-
T Consensus       105 n~aVi~yh~~~~g~a~~~~~~lv~r-~e~le~~~aa~v~~l~~~l~~~t~q~e~al~~l~vL~~~~~~~~~~~~gn~~~~  183 (696)
T KOG2471|consen  105 NFAVIFYHHEENGSAMQLSSNLVSR-TESLESSSAASVTLLSDLLAAETSQCEEALDYLNVLAEIEAEKRMKLVGNHIPA  183 (696)
T ss_pred             hhheeeeeHhhcchHHHhhhhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccch
Confidence            3334444455555666655544332 01100000     11112234444555555544332   2111 000  00000


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 045674          431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRME-DEGCDQTVYTYTILINGMFK  509 (650)
Q Consensus       431 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~l~~~~~~  509 (650)
                          ....+.+....|..-+-...     +.......-+..|.+..+...+..-.+... ..+  .+......-...+..
T Consensus       184 ----nn~~kt~s~~aAe~s~~~a~-----~k~~~~~ykVr~llq~~~Lk~~krevK~vmn~a~--~s~~~l~LKsq~eY~  252 (696)
T KOG2471|consen  184 ----NNLLKTLSPSAAERSFSTAD-----LKLELQLYKVRFLLQTRNLKLAKREVKHVMNIAQ--DSSMALLLKSQLEYA  252 (696)
T ss_pred             ----hhhcccCCcchhcccchhhc-----cchhhhHhhHHHHHHHHHHHHHHHhhhhhhhhcC--CCcHHHHHHHHHHHH
Confidence                01111122222221111100     111111222333444444444433333222 121  122222222334557


Q ss_pred             cCCHHHHHHHHHHHH---HCCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-------CCCC----------
Q 045674          510 EHRNEEALKLWDMMI---DKGITPT-----AASFRALSIGLCLSGKVARACKILDELAP-------KGII----------  564 (650)
Q Consensus       510 ~~~~~~A~~~~~~~~---~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------~~~~----------  564 (650)
                      .|++.+|.+++...-   ..|..-+     ...++.++..+.+.|.+.-+..+|.+++.       .|..          
T Consensus       253 ~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tls~n  332 (696)
T KOG2471|consen  253 HGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTLSQN  332 (696)
T ss_pred             hcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceehhcc
Confidence            899999999886543   1221112     12346777778889999999999988874       2311          


Q ss_pred             -cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674          565 -PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA  614 (650)
Q Consensus       565 -~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (650)
                       .-++.+..+-.|...|+.-.|.+.|.++.+. +..++..|..++.+|...
T Consensus       333 ks~eilYNcG~~~Lh~grPl~AfqCf~~av~v-fh~nPrlWLRlAEcCima  382 (696)
T KOG2471|consen  333 KSMEILYNCGLLYLHSGRPLLAFQCFQKAVHV-FHRNPRLWLRLAECCIMA  382 (696)
T ss_pred             cchhhHHhhhHHHHhcCCcHHHHHHHHHHHHH-HhcCcHHHHHHHHHHHHH
Confidence             3456777888999999999999999999886 477899999999998764

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=92.20  E-value=9.4  Score=35.16  Aligned_cols=74  Identities=19%  Similarity=0.227  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhhhhhh
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSIKRRV  642 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~  642 (650)
                      .+......|..+|.+.+|.++.+++++.+ +.+...+..+...+...|+--.|.+.++++-+     .|+.-+..+..+.
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsieewy  359 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEEWY  359 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHHHh
Confidence            44556788899999999999999999987 78889999999999999998888888877654     4776666665543

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=92.18  E-value=0.54  Score=41.46  Aligned_cols=118  Identities=14%  Similarity=0.024  Sum_probs=65.3

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTA-ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE  584 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  584 (650)
                      .|....+++.|+..|.+.+..  .|+. ..|..-+.++.+..+++.+..--.++++..+.......-++.++.....+++
T Consensus        19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e   96 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE   96 (284)
T ss_pred             cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence            344455666666666666653  3444 2334445555666666666666666666655555555666666666666777


Q ss_pred             HHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          585 ACKLADGIVDR----EREIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       585 A~~~~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      |+..+.++...    ..++-..++..|..+-.+.=...+...+.+
T Consensus        97 aI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q  141 (284)
T KOG4642|consen   97 AIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQ  141 (284)
T ss_pred             HHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHH
Confidence            77766666332    223344555555554333333344444333

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=92.18  E-value=1.7  Score=39.49  Aligned_cols=84  Identities=19%  Similarity=0.201  Sum_probs=47.4

Q ss_pred             CHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------------HHHHHHH
Q 045674          426 NAMFYSSLIDGLGKA-----GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK----------------LDEALAL  484 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------------~~~A~~~  484 (650)
                      |...|...+..+...     +.++-....++.|.+-|+..|..+|+.|++.+-+..-                -+-++++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v  145 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV  145 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence            556666666655432     4566666666777777777777777777776654221                1224444


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          485 FKRMEDEGCDQTVYTYTILINGMFK  509 (650)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~  509 (650)
                      +++|...|+.||..+-..|+.++.+
T Consensus       146 LeqME~hGVmPdkE~e~~lvn~FGr  170 (406)
T KOG3941|consen  146 LEQMEWHGVMPDKEIEDILVNAFGR  170 (406)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHhcc
Confidence            5555555555555555555544433

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=92.08  E-value=5.8  Score=32.52  Aligned_cols=52  Identities=8%  Similarity=0.100  Sum_probs=30.9

Q ss_pred             HcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          474 KCGKLDEALALFKRMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMIDKG  527 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  527 (650)
                      ..++.+++..++..|.-..+. +...++.  +..+...|++++|..+|++..+.+
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~~   74 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSSA   74 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhccC
Confidence            467777777777777654332 2222332  233456777777777777776654

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=91.84  E-value=21  Score=38.34  Aligned_cols=208  Identities=9%  Similarity=0.008  Sum_probs=117.5

Q ss_pred             cCCHHHHHHHHHHHHHC-CCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          370 LGSMNEAINIFERMKYE-GVEPDE--VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA  446 (650)
Q Consensus       370 ~~~~~~A~~~~~~~~~~-~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  446 (650)
                      ..+.+.|..++.+.... ++.+..  ..+..+.......+...++...++......  .+......-+......++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence            45668888888887443 222222  233344333333333566777776654332  2444455555566688899988


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 045674          447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA-LKLWDMMID  525 (650)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A-~~~~~~~~~  525 (650)
                      ...+..|.... .....-.+-++.++...|+.++|...|+.+...   .+  .|..|..  .+.|..-.- ...... ..
T Consensus       332 ~~~i~~L~~~~-~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~~~~~~~~~-~~  402 (644)
T PRK11619        332 NTWLARLPMEA-KEKDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAA--QRLGEEYPLKIDKAPK-PD  402 (644)
T ss_pred             HHHHHhcCHhh-ccCHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHH--HHcCCCCCCCCCCCCc-hh
Confidence            88888876542 345566677888888889999999999987442   12  2322222  222321000 000000 00


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      ..+..+  ....-+..+...|+...|...+..+...  .+..-...++......|.++.++......
T Consensus       403 ~~~~~~--~~~~ra~~L~~~g~~~~a~~ew~~~~~~--~~~~~~~~la~~A~~~g~~~~ai~~~~~~  465 (644)
T PRK11619        403 SALTQG--PEMARVRELMYWNMDNTARSEWANLVAS--RSKTEQAQLARYAFNQQWWDLSVQATIAG  465 (644)
T ss_pred             hhhccC--hHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCHHHHHHHHhhc
Confidence            000001  1122344566778888888888887764  24455566667777888888877766543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=91.77  E-value=7.3  Score=33.01  Aligned_cols=134  Identities=16%  Similarity=0.166  Sum_probs=66.0

Q ss_pred             HHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcC
Q 045674          273 EKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRG  352 (650)
Q Consensus       273 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  352 (650)
                      ++++.+.+.++.++...+..++..+.+.|++.....    +...++-+|.......+-.+  .+....+.++--+|..+ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~q----llq~~Vi~DSk~lA~~LLs~--~~~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQ----LLQYHVIPDSKPLACQLLSL--GNQYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH----HHhhcccCCcHHHHHHHHHh--HccChHHHHHHHHHHHH-
Confidence            445555566667777777777777777776554333    33334433433333222111  12223333333333332 


Q ss_pred             CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          353 CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRA  420 (650)
Q Consensus       353 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  420 (650)
                         =...+..++..+...|++-+|+.+..+....    +......++.+..+.++...-..+++....
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~  148 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEE  148 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence               1112445666677777777777776664321    222234455555555555444444444333

>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]

Probab=91.76  E-value=20  Score=38.00  Aligned_cols=102  Identities=10%  Similarity=0.037  Sum_probs=59.6

Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHc
Q 045674          189 IKSFGGLGMVEELLWVWRSMKENGIEP---SLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKV  265 (650)
Q Consensus       189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  265 (650)
                      +..+.+.+.+++|+...+.....  .+   -......++..+...|++++|....-.|.    .-+..-|...+..+...
T Consensus       363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~----gn~~~eWe~~V~~f~e~  436 (846)
T KOG2066|consen  363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKML----GNNAAEWELWVFKFAEL  436 (846)
T ss_pred             HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHh----cchHHHHHHHHHHhccc
Confidence            34455566777777666554432  22   23345666777777888888888777777    33566777777767666


Q ss_pred             CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 045674          266 GKTQKAMEKFRAMEARNVQPDKITYMTLIQACYL  299 (650)
Q Consensus       266 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  299 (650)
                      ++......++   .......+...|..++..+..
T Consensus       437 ~~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~  467 (846)
T KOG2066|consen  437 DQLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA  467 (846)
T ss_pred             cccchhhccC---CCCCcccCchHHHHHHHHHHH
Confidence            6655443322   221122345566666666655

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=91.56  E-value=1.9  Score=39.22  Aligned_cols=33  Identities=18%  Similarity=0.347  Sum_probs=20.8

Q ss_pred             HHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC
Q 045674          340 EGHAIFESMIRRGCQPNVAIYTALIDSYAKLGS  372 (650)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  372 (650)
                      -++.++++|...|+.||..+-..|+.++.+.+.
T Consensus       141 C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  141 CAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            355666666666666666666666666665554

>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function

Probab=91.44  E-value=14  Score=35.69  Aligned_cols=115  Identities=14%  Similarity=0.072  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 045674          481 ALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL---SGKVARACKILDE  557 (650)
Q Consensus       481 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~---~g~~~~A~~~~~~  557 (650)
                      -+.+++++++.++ .+...+..++..+.+..+.++..+.|++++...+. +...|...+.....   .-.+++....|.+
T Consensus        50 klsilerAL~~np-~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~~~~-~~~LW~~yL~~~q~~~~~f~v~~~~~~y~~  127 (321)
T PF08424_consen   50 KLSILERALKHNP-DSERLLLGYLEEGEKVWDSEKLAKKWEELLFKNPG-SPELWREYLDFRQSNFASFTVSDVRDVYEK  127 (321)
T ss_pred             HHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHhccCcHHHHHHHHHH
Confidence            3444555444433 24444444455555555555555555555544222 34444443333221   1123344444433


Q ss_pred             HhhC------CC-----C-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          558 LAPK------GI-----I-------PETAFEDMITCLCKTGRIKEACKLADGIVDRER  597 (650)
Q Consensus       558 ~~~~------~~-----~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  597 (650)
                      .+..      +.     .       -..++..+...+...|..+.|..+++.+++.++
T Consensus       128 ~l~~L~~~~~~~~~~~~~~~~~e~~~l~v~~r~~~fl~~aG~~E~Ava~~Qa~lE~n~  185 (321)
T PF08424_consen  128 CLRALSRRRSGRMTSHPDLPELEEFMLYVFLRLCRFLRQAGYTERAVALWQALLEFNF  185 (321)
T ss_pred             HHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHHCCchHHHHHHHHHHHHHHc
Confidence            3310      00     0       113444556666788888888888888888764

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=91.42  E-value=0.41  Score=27.76  Aligned_cols=26  Identities=12%  Similarity=0.166  Sum_probs=12.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          604 RTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       604 ~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      |..++..|...|++++|.+.|+++++
T Consensus         4 ~~~lg~~y~~~~~~~~A~~~~~~a~~   29 (34)
T PF13181_consen    4 YYNLGKIYEQLGDYEEALEYFEKALE   29 (34)
T ss_dssp             HHHHHHHHHHTTSHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            44444445555555555555555444

...

>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]

Probab=91.15  E-value=4.8  Score=32.22  Aligned_cols=73  Identities=10%  Similarity=0.100  Sum_probs=43.5

Q ss_pred             CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH
Q 045674          494 DQTVYTYTILINGMFKEHR---NEEALKLWDMMID-KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPE  566 (650)
Q Consensus       494 ~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~-~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  566 (650)
                      .++..+-..+..++.++.+   ..+.+.++++..+ ..+.-.......|+-++.+.+++++++++.+.+++..+.+.
T Consensus        29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~  105 (149)
T KOG3364|consen   29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNR  105 (149)
T ss_pred             cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcH
Confidence            3455555555666665443   4556667777764 33333444555666677777777777777777776655543

>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]

Probab=90.99  E-value=12  Score=33.98  Aligned_cols=131  Identities=10%  Similarity=0.059  Sum_probs=62.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA-RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG  591 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  591 (650)
                      ..+-++.++++.+.+++ +-..|..--......|+.. .-+++...|+..+.++-.+|.+--.++..-+.++.-+.+..+
T Consensus        94 L~~El~~l~eI~e~npK-NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~  172 (318)
T KOG0530|consen   94 LNKELEYLDEIIEDNPK-NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADE  172 (318)
T ss_pred             HHHHHHHHHHHHHhCcc-chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHH
Confidence            44445555555554443 4443332222223334444 455556666655445555666655555555556666666666


Q ss_pred             HHHcCCCCCHHHHHHHHHHHHh-cC-----CHHHHHHHHHHHHHCCCCChhhhhhhhccc
Q 045674          592 IVDREREIPGKIRTALINALRK-AG-----NADLAIKLMHSKIGVGYDRMGSIKRRVKFR  645 (650)
Q Consensus       592 ~~~~~~~~~~~~~~~l~~~~~~-~g-----~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~  645 (650)
                      +++.++. |..+|+.---.... .|     ..+.-+.+..+.+..-|...+..+++..+.
T Consensus       173 Lle~Di~-NNSAWN~Ryfvi~~~~~~~~~~~le~El~yt~~~I~~vP~NeSaWnYL~G~l  231 (318)
T KOG0530|consen  173 LLEEDIR-NNSAWNQRYFVITNTKGVISKAELERELNYTKDKILLVPNNESAWNYLKGLL  231 (318)
T ss_pred             HHHHhhh-ccchhheeeEEEEeccCCccHHHHHHHHHHHHHHHHhCCCCccHHHHHHHHH
Confidence            6655533 22333321111001 11     123334445555555555666665555443

>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]

Probab=90.84  E-value=1.4  Score=44.30  Aligned_cols=139  Identities=14%  Similarity=0.043  Sum_probs=98.2

Q ss_pred             CCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHH
Q 045674          495 QTVYTYTILINGMFKE--HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFED  571 (650)
Q Consensus       495 ~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~  571 (650)
                      |+..+...++.-....  ...+-+..++.. .+.-+.|--.+++..+-.+...|+...|.+.+..+....|. .......
T Consensus       569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~-~~~~~~p~w~~ln~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~v~  647 (886)
T KOG4507|consen  569 PDDHARKILLSRINNYTIPEEEIGSFLFHA-INKPNAPIWLILNEAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPLVN  647 (886)
T ss_pred             chHHHHHHHHHHHhcccCcHHHHHHHHHHH-hcCCCCCeEEEeecccceeeecCCcHHHHHHHHHHhccChhhhcccHHH
Confidence            4555555544333211  112233333333 33333443334444443445689999999999999877676 5556778


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      |+.++.+.|-...|-.++.+.+... ...+.++..+++++....+.++|++.++.++++.+...
T Consensus       648 la~~~~~~~~~~da~~~l~q~l~~~-~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~~~~~~  710 (886)
T KOG4507|consen  648 LANLLIHYGLHLDATKLLLQALAIN-SSEPLTFLSLGNAYLALKNISGALEAFRQALKLTTKCP  710 (886)
T ss_pred             HHHHHHHhhhhccHHHHHHHHHhhc-ccCchHHHhcchhHHHHhhhHHHHHHHHHHHhcCCCCh
Confidence            8999999999999999999999876 56677888999999999999999999999999987743

>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=90.74  E-value=4.8  Score=35.81  Aligned_cols=118  Identities=15%  Similarity=0.037  Sum_probs=82.2

Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHhcCCH
Q 045674          471 ALAKCGKLDEALALFKRMEDEGCDQTV-YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA-SFRALSIGLCLSGKV  548 (650)
Q Consensus       471 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~  548 (650)
                      .|....+++.|+..|.+.+..  .|+. .-|+.=+.++.+.++++.+..--.+.++.  .||.. ....++.++.....+
T Consensus        19 k~f~~k~y~~ai~~y~raI~~--nP~~~~Y~tnralchlk~~~~~~v~~dcrralql--~~N~vk~h~flg~~~l~s~~~   94 (284)
T KOG4642|consen   19 KCFIPKRYDDAIDCYSRAICI--NPTVASYYTNRALCHLKLKHWEPVEEDCRRALQL--DPNLVKAHYFLGQWLLQSKGY   94 (284)
T ss_pred             cccchhhhchHHHHHHHHHhc--CCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhc--ChHHHHHHHHHHHHHHhhccc
Confidence            366667899999988888876  4555 44566677788899999988888887774  44543 556677888889999


Q ss_pred             HHHHHHHHHHhhCC----CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          549 ARACKILDELAPKG----II-PETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       549 ~~A~~~~~~~~~~~----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      ++|+..+.++....    +. -..+...|..+-...=...+..++.++.
T Consensus        95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~~  143 (284)
T KOG4642|consen   95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQEL  143 (284)
T ss_pred             cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHHh
Confidence            99999999986432    22 3455666655544444455666665544

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=90.58  E-value=3.4  Score=41.88  Aligned_cols=150  Identities=19%  Similarity=0.122  Sum_probs=87.0

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      ..|+++.|..++..+.       ....+.+...+.++|..++|+++-       ..++.     -.....+.|+++.|.+
T Consensus       598 mrrd~~~a~~vLp~I~-------k~~rt~va~Fle~~g~~e~AL~~s-------~D~d~-----rFelal~lgrl~iA~~  658 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIP-------KEIRTKVAHFLESQGMKEQALELS-------TDPDQ-----RFELALKLGRLDIAFD  658 (794)
T ss_pred             hhccccccccccccCc-------hhhhhhHHhHhhhccchHhhhhcC-------CChhh-----hhhhhhhcCcHHHHHH
Confidence            3456666655444333       123344555566667666665432       22221     1223456677777776


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI  528 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  528 (650)
                      +..+.      .+..-|..|..+..+.|++..|.+.|.+..+         |..|+-.+...|+.+....+-....+.|.
T Consensus       659 la~e~------~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~  723 (794)
T KOG0276|consen  659 LAVEA------NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK  723 (794)
T ss_pred             HHHhh------cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence            65443      3555677888888888888888877776554         34455556666776665555555555543


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          529 TPTAASFRALSIGLCLSGKVARACKILDEL  558 (650)
Q Consensus       529 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~  558 (650)
                      . |...     .+|...|+++++.+++..-
T Consensus       724 ~-N~AF-----~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  724 N-NLAF-----LAYFLSGDYEECLELLIST  747 (794)
T ss_pred             c-chHH-----HHHHHcCCHHHHHHHHHhc
Confidence            3 3322     2355678888877777654

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=90.46  E-value=10  Score=32.21  Aligned_cols=135  Identities=13%  Similarity=0.238  Sum_probs=68.4

Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674          483 ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG  562 (650)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  562 (650)
                      +.++.+.+.++.++...+..++..+.+.|++..-.    .++..++-+|.......+-  ...+.+..+.++--.|... 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LL--s~~~~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLL--SLGNQYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHH--HhHccChHHHHHHHHHHHH-
Confidence            44455555666677777777777777777655433    3334444445444433221  1122233333332222221 


Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                        -...+..+++++...|++-+|.++.++....+ ..++   ..+..+..+.++...=..+++-..+.
T Consensus        88 --L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~-~~~~---~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 --LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD-SVPA---RKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             --hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc-cCCH---HHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence              11234556667777788888877777653222 1222   33455555566655555555544443

>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A

Probab=90.44  E-value=0.81  Score=26.47  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=25.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .+|..++.++...|++++|.+.|+++++..
T Consensus         2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~~   31 (34)
T PF13181_consen    2 EAYYNLGKIYEQLGDYEEALEYFEKALELN   31 (34)
T ss_dssp             HHHHHHHHHHHHTTSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            467788899999999999999999988764

...

>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A

Probab=90.41  E-value=0.61  Score=26.68  Aligned_cols=28  Identities=25%  Similarity=0.441  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++..++.++.+.|++++|.+.|+++++.
T Consensus         2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~   29 (33)
T PF13174_consen    2 ALYRLARCYYKLGDYDEAIEYFQRLIKR   29 (33)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            3455666666777777777777776654

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=90.41  E-value=0.71  Score=47.76  Aligned_cols=18  Identities=28%  Similarity=0.516  Sum_probs=9.0

Q ss_pred             CHHHHHHHHHHHHhcCCh
Q 045674          321 PSHAYNLVIGGLCKVGKC  338 (650)
Q Consensus       321 ~~~~~~~l~~~~~~~g~~  338 (650)
                      +..+|..=+..+|+..+.
T Consensus       837 Na~afgF~is~L~kL~dT  854 (1102)
T KOG1924|consen  837 NAQAFGFNISFLCKLRDT  854 (1102)
T ss_pred             cchhhccchHHHHhhccc
Confidence            344555555555554443

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=90.36  E-value=10  Score=33.02  Aligned_cols=76  Identities=13%  Similarity=0.061  Sum_probs=53.4

Q ss_pred             hcCCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHhcCCHHH
Q 045674          544 LSGKVARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRE---REIPGKIRTALINALRKAGNADL  619 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~  619 (650)
                      +.|+ ++|.+.|-++...+.. +++....|+..|. ..+.++|+.++.++++..   -.+|+.++..|+..+.+.|+++.
T Consensus       119 r~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~  196 (203)
T PF11207_consen  119 RFGD-QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQ  196 (203)
T ss_pred             ccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhh
Confidence            3344 5566666666655443 7777777776665 556788888888887763   14568888888888888888888


Q ss_pred             HH
Q 045674          620 AI  621 (650)
Q Consensus       620 A~  621 (650)
                      |.
T Consensus       197 AY  198 (203)
T PF11207_consen  197 AY  198 (203)
T ss_pred             hh
Confidence            75

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=90.35  E-value=0.76  Score=28.14  Aligned_cols=28  Identities=25%  Similarity=0.368  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          602 KIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .+++.++..|...|++++|..+++++++
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            3566677777777777777777777665

>PRK09687 putative lyase; Provisional

Probab=90.05  E-value=17  Score=34.27  Aligned_cols=136  Identities=15%  Similarity=0.110  Sum_probs=65.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH-RNEEALKLWDMMIDKGITPTAASFRALS  539 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~  539 (650)
                      +..+-...+.++.+.++ +++...+-.+.+.   ++...-...+.++...+ +...+...+..++.   .++..+-...+
T Consensus       141 ~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~  213 (280)
T PRK09687        141 STNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAI  213 (280)
T ss_pred             CHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHH
Confidence            44455555555555554 3444555454442   23333333333333322 12344555544442   33455555555


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      +++.+.|+ ..|...+-+..+.+.    .....+.++...|.. +|+..+..+.+..  +|..+.....++|
T Consensus       214 ~aLg~~~~-~~av~~Li~~L~~~~----~~~~a~~ALg~ig~~-~a~p~L~~l~~~~--~d~~v~~~a~~a~  277 (280)
T PRK09687        214 IGLALRKD-KRVLSVLIKELKKGT----VGDLIIEAAGELGDK-TLLPVLDTLLYKF--DDNEIITKAIDKL  277 (280)
T ss_pred             HHHHccCC-hhHHHHHHHHHcCCc----hHHHHHHHHHhcCCH-hHHHHHHHHHhhC--CChhHHHHHHHHH
Confidence            66666555 345555555554321    234455566666653 5666666666532  3555444444443

>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]

Probab=90.02  E-value=21  Score=35.16  Aligned_cols=92  Identities=15%  Similarity=0.150  Sum_probs=59.5

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHHHHHHHHHHHC------CCCCCHHHHHHHHH
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF-KEHRNEEALKLWDMMIDK------GITPTAASFRALSI  540 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A~~~~~~~~~~------~~~p~~~~~~~l~~  540 (650)
                      .+..+.+.|.+..|.++.+-+...++.-|+..-..+|..|+ +.++++--+++.+.....      ..-|+-.  .+.+-
T Consensus       109 ~i~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~~~~~~~~~~~lPn~a--~S~aL  186 (360)
T PF04910_consen  109 YIQSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPLAKCYRNWLSLLPNFA--FSIAL  186 (360)
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHhhhhhhhhhhhCccHH--HHHHH
Confidence            45567788888888888888888766656666666666664 677777777777765541      1123322  23333


Q ss_pred             HHHhcCCH---------------HHHHHHHHHHhhC
Q 045674          541 GLCLSGKV---------------ARACKILDELAPK  561 (650)
Q Consensus       541 ~~~~~g~~---------------~~A~~~~~~~~~~  561 (650)
                      ++...++.               ++|.+.+.+++..
T Consensus       187 A~~~l~~~~~~~~~~~~~~~~~~~~A~~~L~~Ai~~  222 (360)
T PF04910_consen  187 AYFRLEKEESSQSSAQSGRSENSESADEALQKAILR  222 (360)
T ss_pred             HHHHhcCccccccccccccccchhHHHHHHHHHHHH
Confidence            44445555               7888888888765

Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=89.91  E-value=0.39  Score=47.06  Aligned_cols=102  Identities=15%  Similarity=0.055  Sum_probs=75.9

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTAASF-RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI  582 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  582 (650)
                      +..+...++++.|..++.++++.  .||...| ..-..++.+.+++..|+.=+.++++..|.....|..-+.++...+++
T Consensus        11 an~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~~   88 (476)
T KOG0376|consen   11 ANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGEF   88 (476)
T ss_pred             HhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHHH
Confidence            34456778899999999999885  5555444 33346788889999999988888888877777788788888888899


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          583 KEACKLADGIVDREREIPGKIRTALIN  609 (650)
Q Consensus       583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~  609 (650)
                      .+|...|+......  |+.......+.
T Consensus        89 ~~A~~~l~~~~~l~--Pnd~~~~r~~~  113 (476)
T KOG0376|consen   89 KKALLDLEKVKKLA--PNDPDATRKID  113 (476)
T ss_pred             HHHHHHHHHhhhcC--cCcHHHHHHHH
Confidence            99999998888663  44443433333

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.80  E-value=4.7  Score=36.11  Aligned_cols=41  Identities=22%  Similarity=0.158  Sum_probs=19.4

Q ss_pred             HHhcCCHHHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHhcCC
Q 045674          507 MFKEHRNEEALKLWDMMID----KGITPT--AASFRALSIGLCLSGK  547 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~----~~~~p~--~~~~~~l~~~~~~~g~  547 (650)
                      +.....+++|++.+.-++-    .+..+.  ...+..++|.|-..|+
T Consensus        87 ~~~~Rt~~~ai~~YkLAll~~~~~~~~~s~~A~l~LrlAWlyR~~~~  133 (214)
T PF09986_consen   87 FSGERTLEEAIESYKLALLCAQIKKEKPSKKAGLCLRLAWLYRDLGD  133 (214)
T ss_pred             CCCCCCHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhccCC
Confidence            4445556666666555441    122222  2233445555555555

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=89.75  E-value=0.88  Score=27.82  Aligned_cols=29  Identities=21%  Similarity=0.379  Sum_probs=21.1

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .+++.++.+|...|++++|..+++++++.
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~   31 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALEI   31 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence            45677888888888888888888877653

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=89.71  E-value=0.67  Score=28.90  Aligned_cols=27  Identities=26%  Similarity=0.268  Sum_probs=22.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          606 ALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       606 ~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      .++.+|...|+.+.|+++++++++.|-
T Consensus         4 dLA~ayie~Gd~e~Ar~lL~evl~~~~   30 (44)
T TIGR03504         4 DLARAYIEMGDLEGARELLEEVIEEGD   30 (44)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHcCC
Confidence            477888889999999999998886544

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function

Probab=89.62  E-value=9.2  Score=34.27  Aligned_cols=30  Identities=23%  Similarity=0.191  Sum_probs=16.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          603 IRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       603 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      +...++....+.|++++|.+++.+++..+-
T Consensus       167 l~YLigeL~rrlg~~~eA~~~fs~vi~~~~  196 (214)
T PF09986_consen  167 LLYLIGELNRRLGNYDEAKRWFSRVIGSKK  196 (214)
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHcCCC
Confidence            334455555566666666666666655443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=88.84  E-value=9.1  Score=35.05  Aligned_cols=34  Identities=21%  Similarity=0.364  Sum_probs=21.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTY  500 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  500 (650)
                      .+++-..+.+++++|+..+.++...|+..+..+.
T Consensus         8 e~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~   41 (421)
T COG5159           8 ELANNAVKSNDIEKAIGEYKRILGKGVSKDEKTL   41 (421)
T ss_pred             HHHHHhhhhhhHHHHHHHHHHHhcCCCChhhhhh
Confidence            3445556667777777777777777766555443

>PRK12798 chemotaxis protein; Reviewed

Probab=88.69  E-value=26  Score=34.48  Aligned_cols=192  Identities=13%  Similarity=0.051  Sum_probs=114.5

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCH
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL-AKCGKLDEALALFKRMEDEGCDQTV----YTYTILINGMFKEHRN  513 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~  513 (650)
                      -.|+.+++.+.+..+.....++....+..|+.+- ....+...|+++|+...-.  .|..    ..+..-+......|+.
T Consensus       124 ~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRLl--aPGTLvEEAALRRsi~la~~~g~~  201 (421)
T PRK12798        124 LSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARLL--APGTLVEEAALRRSLFIAAQLGDA  201 (421)
T ss_pred             HcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHHh--CCchHHHHHHHHHhhHHHHhcCcH
Confidence            4688888988888887776677777777777653 3456788899999887654  2332    2333334455678888


Q ss_pred             HHHHHHHHHHHHC-CCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHhh-CCCC-cHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          514 EEALKLWDMMIDK-GITPTAASF-RALSIGLCLSGKVARACKILDELAP-KGII-PETAFEDMITCLCKTGRIKEACKLA  589 (650)
Q Consensus       514 ~~A~~~~~~~~~~-~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~  589 (650)
                      +++..+-...... ...|-..-| ..+..++.+.++-..-.. +..++. ..+. -..+|..++..-.-.|+.+-|...-
T Consensus       202 ~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~-l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As  280 (421)
T PRK12798        202 DKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDAR-LVEILSFMDPERQRELYLRIARAALIDGKTELARFAS  280 (421)
T ss_pred             HHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHH-HHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8877666655532 222322222 223333444332222222 344433 3343 5678888888888899999998888


Q ss_pred             HHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          590 DGIVDREREIPG---KIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       590 ~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ++++......+.   .....-+-+-.-..++++|.+.+..+-.....
T Consensus       281 ~~A~~L~~~~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I~~~~L~  327 (421)
T PRK12798        281 ERALKLADPDSADAARARLYRGAALVASDDAESALEELSQIDRDKLS  327 (421)
T ss_pred             HHHHHhccCCCcchHHHHHHHHHHccCcccHHHHHHHHhcCChhhCC
Confidence            888876422221   11111122223456778888777776665554

>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]

Probab=88.61  E-value=26  Score=34.47  Aligned_cols=48  Identities=10%  Similarity=0.027  Sum_probs=33.0

Q ss_pred             HHHHHhcCCCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHH
Q 045674           83 QILNLLDGSSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVG  130 (650)
Q Consensus        83 ~~~~~l~~~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~a  130 (650)
                      .|....-+.++...+...+.+--.....|-++.++...+...++-+.-
T Consensus        55 sii~eyfstgdv~vaa~dl~elg~seyhpyfvkrlvsmamdrhdkeke  102 (645)
T KOG0403|consen   55 SIIDEYFSTGDVVVAASDLKELGSSEYHPYFVKRLVSMAMDRHDKEKE  102 (645)
T ss_pred             HHHHHHccCCCchhhHHHHHHhccccccHHHHHHHHHHHhhccchHHH
Confidence            344444468888888877776555667788888888877766655443

>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]

Probab=88.58  E-value=20  Score=33.00  Aligned_cols=32  Identities=19%  Similarity=0.350  Sum_probs=18.9

Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674          258 MIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT  289 (650)
Q Consensus       258 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  289 (650)
                      +.+-..+.+++++|+..+.++...|+..+..+
T Consensus         9 ~a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~   40 (421)
T COG5159           9 LANNAVKSNDIEKAIGEYKRILGKGVSKDEKT   40 (421)
T ss_pred             HHHHhhhhhhHHHHHHHHHHHhcCCCChhhhh
Confidence            34445555666666666666666665555443

>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.53  E-value=19  Score=32.75  Aligned_cols=156  Identities=11%  Similarity=0.055  Sum_probs=80.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CC--CCCHHHHHHHHHHHHHcC
Q 045674          405 NERLEEAMQYFEFCRANGVAVNA---MFYSSLIDGLGKAGRVDEAEELFEEMVEK---GC--PRDSYCYNVLIDALAKCG  476 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~---~~--~~~~~~~~~l~~~~~~~g  476 (650)
                      ....++|+.-|.+..+.......   .....++..+.+.+++++..+.+.+++.-   .+  .-+....+.++.......
T Consensus        40 e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~  119 (440)
T KOG1464|consen   40 EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSK  119 (440)
T ss_pred             ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhh
Confidence            44677888888777765433232   33445667777788888877777776541   00  123345556665555555


Q ss_pred             CHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCC------CCHHHHHHHHH
Q 045674          477 KLDEALALFKRMEDE-----GCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----GIT------PTAASFRALSI  540 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~~------p~~~~~~~l~~  540 (650)
                      +.+-...+++.-++.     +-..-..|-..|...|...+.+.+..++++++...     |-.      --...|..-++
T Consensus       120 ~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQ  199 (440)
T KOG1464|consen  120 NMDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQ  199 (440)
T ss_pred             hhHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhh
Confidence            555555555443221     00111123344556666666666666666665431     100      01123444445


Q ss_pred             HHHhcCCHHHHHHHHHHHhh
Q 045674          541 GLCLSGKVARACKILDELAP  560 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~  560 (650)
                      .|-.+.+-.+-..+|++++.
T Consensus       200 mYT~qKnNKkLK~lYeqalh  219 (440)
T KOG1464|consen  200 MYTEQKNNKKLKALYEQALH  219 (440)
T ss_pred             hhhhhcccHHHHHHHHHHHH
Confidence            55555555555555555553

>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.13  E-value=0.69  Score=43.24  Aligned_cols=91  Identities=16%  Similarity=0.139  Sum_probs=55.0

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA  551 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  551 (650)
                      ....|.++.|++.|...+...+ +....|..-..++.+.+++..|++=+...++.+.. +..-|-.-..+....|++++|
T Consensus       124 Aln~G~~~~ai~~~t~ai~lnp-~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~D-sa~~ykfrg~A~rllg~~e~a  201 (377)
T KOG1308|consen  124 ALNDGEFDTAIELFTSAIELNP-PLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPD-SAKGYKFRGYAERLLGNWEEA  201 (377)
T ss_pred             HhcCcchhhhhcccccccccCC-chhhhcccccceeeeccCCchhhhhhhhhhccCcc-cccccchhhHHHHHhhchHHH
Confidence            3446677777777777776643 35555555566666777777777766666654332 222333334444556777777


Q ss_pred             HHHHHHHhhCCCC
Q 045674          552 CKILDELAPKGII  564 (650)
Q Consensus       552 ~~~~~~~~~~~~~  564 (650)
                      ...+..+.+.+.+
T Consensus       202 a~dl~~a~kld~d  214 (377)
T KOG1308|consen  202 AHDLALACKLDYD  214 (377)
T ss_pred             HHHHHHHHhcccc
Confidence            7777777766544

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=88.02  E-value=7.4  Score=29.09  Aligned_cols=62  Identities=19%  Similarity=0.194  Sum_probs=30.2

Q ss_pred             HHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCC
Q 045674          555 LDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGN  616 (650)
Q Consensus       555 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~  616 (650)
                      +++.+..+|.|......++..+...|++++|++.+-.+++.+... +...-..++..+...|.
T Consensus        11 l~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~   73 (90)
T PF14561_consen   11 LEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGP   73 (90)
T ss_dssp             HHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-T
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCC
Confidence            344444455566666666666666666666666666665543111 23344444444444444

>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]

Probab=87.79  E-value=40  Score=35.66  Aligned_cols=55  Identities=20%  Similarity=0.176  Sum_probs=35.3

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          571 DMITCLCKTGRIKEACKLADGIVDREREIPGK----IRTALINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                      .++-++..-|+.++|..+++++....   |+.    -...++.+|+-.|+-...++++.-+.
T Consensus       506 ~vGiaL~~ygrqe~Ad~lI~el~~dk---dpilR~~Gm~t~alAy~GTgnnkair~lLh~aV  564 (929)
T KOG2062|consen  506 AVGIALVVYGRQEDADPLIKELLRDK---DPILRYGGMYTLALAYVGTGNNKAIRRLLHVAV  564 (929)
T ss_pred             HHhHHHHHhhhhhhhHHHHHHHhcCC---chhhhhhhHHHHHHHHhccCchhhHHHhhcccc
Confidence            34556667788888888888887543   222    22346667777777777666666533

>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]

Probab=87.02  E-value=1.5  Score=43.09  Aligned_cols=103  Identities=15%  Similarity=0.034  Sum_probs=71.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTY-TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      -+..+...+.++.|..++.++++.  .||...| ..=..++.+.+++..|+.=+.++++..+. -...|..=+.++.+.+
T Consensus        10 ean~~l~~~~fd~avdlysKaI~l--dpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~-~~K~Y~rrg~a~m~l~   86 (476)
T KOG0376|consen   10 EANEALKDKVFDVAVDLYSKAIEL--DPNCAIYFANRALAHLKVESFGGALHDALKAIELDPT-YIKAYVRRGTAVMALG   86 (476)
T ss_pred             HHhhhcccchHHHHHHHHHHHHhc--CCcceeeechhhhhheeechhhhHHHHHHhhhhcCch-hhheeeeccHHHHhHH
Confidence            345566778899999999999886  4444333 33346778888999998888888876432 2234444456667778


Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMI  573 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~  573 (650)
                      .+.+|...|+......|.++.+...+-
T Consensus        87 ~~~~A~~~l~~~~~l~Pnd~~~~r~~~  113 (476)
T KOG0376|consen   87 EFKKALLDLEKVKKLAPNDPDATRKID  113 (476)
T ss_pred             HHHHHHHHHHHhhhcCcCcHHHHHHHH
Confidence            888888888888887777666555443

>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]

Probab=87.02  E-value=84  Score=38.50  Aligned_cols=318  Identities=13%  Similarity=0.106  Sum_probs=170.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674          292 TLIQACYLEGDFDSCLSLYHEMDEKGI--EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK  369 (650)
Q Consensus       292 ~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (650)
                      .+..+-.+.+.+.+|...++.-.....  ......+..+...|...+++|....+......   .|+   ....+.....
T Consensus      1388 tLa~aSfrc~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a---~~s---l~~qil~~e~ 1461 (2382)
T KOG0890|consen 1388 TLARASFRCKAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFA---DPS---LYQQILEHEA 1461 (2382)
T ss_pred             HHHHHHHhhHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhc---Ccc---HHHHHHHHHh
Confidence            455566777888888888887411111  11233444555588888888888777664111   122   2235556677


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          370 LGSMNEAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       370 ~~~~~~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      .|++..|...|+++.+.  .|+ ..+++.++......|.++..+...+-......+-....++.=+.+--+.+++|....
T Consensus      1462 ~g~~~da~~Cye~~~q~--~p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~~se~~~~~~s~~~eaaW~l~qwD~~e~ 1539 (2382)
T KOG0890|consen 1462 SGNWADAAACYERLIQK--DPDKEKHHSGVLKSMLAIQHLSTEILHLDGLIINRSEEVDELNSLGVEAAWRLSQWDLLES 1539 (2382)
T ss_pred             hccHHHHHHHHHHhhcC--CCccccchhhHHHhhhcccchhHHHhhhcchhhccCHHHHHHHHHHHHHHhhhcchhhhhh
Confidence            89999999999999876  444 567777777777778888777766655444222112222333444466777777666


Q ss_pred             HHHHHHHcCCCCCHHHHHH--HHHHHHHcCCHH--HHHHHHHHHHHc--------CCCC-CHHHHHHHHHHHHhcCCHHH
Q 045674          449 LFEEMVEKGCPRDSYCYNV--LIDALAKCGKLD--EALALFKRMEDE--------GCDQ-TVYTYTILINGMFKEHRNEE  515 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~--~A~~~~~~~~~~--------~~~~-~~~~~~~l~~~~~~~~~~~~  515 (650)
                      .+.   .    .+..+|..  ++..+.+..+-+  .-.+..+.+.+.        +..- -...|..++....-. +.+.
T Consensus      1540 ~l~---~----~n~e~w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~-el~~ 1611 (2382)
T KOG0890|consen 1540 YLS---D----RNIEYWSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLL-ELEN 1611 (2382)
T ss_pred             hhh---c----ccccchhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHH-HHHH
Confidence            554   1    12222222  233322222111  111222222221        1110 112233333322111 1111


Q ss_pred             HHHHHHHHHHCCCCCCHHH-HHHHHHH--HHhcCCHHHHHHHH---HHHh-h---C-CCC--cHHHHHHHHHHHHHcCCH
Q 045674          516 ALKLWDMMIDKGITPTAAS-FRALSIG--LCLSGKVARACKIL---DELA-P---K-GII--PETAFEDMITCLCKTGRI  582 (650)
Q Consensus       516 A~~~~~~~~~~~~~p~~~~-~~~l~~~--~~~~g~~~~A~~~~---~~~~-~---~-~~~--~~~~~~~l~~~~~~~g~~  582 (650)
                      -.+.+.     +..++..+ .+..-|.  +.+.+..-.+.+.+   ++.. .   . +..  -.+.|...++.....|++
T Consensus      1612 ~~~~l~-----~~s~~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~ 1686 (2382)
T KOG0890|consen 1612 SIEELK-----KVSYDEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHL 1686 (2382)
T ss_pred             HHHHhh-----ccCccccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccH
Confidence            111111     12222111 1111111  11222222232222   2211 1   1 122  568899999999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          583 KEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       583 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +.|...+-++.+..   -+.++.-.+..++..|+-..|+.++++.+++...
T Consensus      1687 q~A~nall~A~e~r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~ 1734 (2382)
T KOG0890|consen 1687 QRAQNALLNAKESR---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFP 1734 (2382)
T ss_pred             HHHHHHHHhhhhcc---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcc
Confidence            99999988888765   3455667788899999999999999999977543

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.94  E-value=10  Score=33.14  Aligned_cols=71  Identities=14%  Similarity=0.055  Sum_probs=35.9

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CcHHHHHHHHHHHHHcCCHHHH
Q 045674          514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI----IPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      ++|.+.|-.+...+.--++.....++..|. ..+.+++..++.++++...    .+++++..|+..+.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            344555544444333334444444443333 4555666666655554321    1556666666666666666655

>PRK10941 hypothetical protein; Provisional

Probab=86.88  E-value=5  Score=37.32  Aligned_cols=59  Identities=12%  Similarity=-0.042  Sum_probs=31.7

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .+-.+|.+.++++.|++..+.++...|.++.-+..-|-+|.+.|.+..|..-++..++.
T Consensus       186 nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~  244 (269)
T PRK10941        186 TLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ  244 (269)
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence            33344455555555555555555555555555555555555555555555555555443

>smart00028 TPR Tetratricopeptide repeats

Probab=86.74  E-value=1.4  Score=24.49  Aligned_cols=26  Identities=27%  Similarity=0.231  Sum_probs=12.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          604 RTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       604 ~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      +..++..+...|++++|...+++.++
T Consensus         4 ~~~~a~~~~~~~~~~~a~~~~~~~~~   29 (34)
T smart00028        4 LYNLGNAYLKLGDYDEALEYYEKALE   29 (34)
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            34444445555555555555555444

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>PRK11619 lytic murein transglycosylase; Provisional

Probab=86.70  E-value=50  Score=35.55  Aligned_cols=206  Identities=10%  Similarity=0.008  Sum_probs=118.2

Q ss_pred             cCCHHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          405 NERLEEAMQYFEFCRANG-VAVN--AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA  481 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~~-~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  481 (650)
                      ..+.+.|...+....... ....  ..+...++......+..++|...+.......  .+.......+..-.+.++++.+
T Consensus       254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~~--~~~~~~e~r~r~Al~~~dw~~~  331 (644)
T PRK11619        254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMRS--QSTSLLERRVRMALGTGDRRGL  331 (644)
T ss_pred             HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhccccc--CCcHHHHHHHHHHHHccCHHHH
Confidence            455688888888764443 2221  2233444433344433566777776654432  3445555556666688999998


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH--h
Q 045674          482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDEL--A  559 (650)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~--~  559 (650)
                      ...+..|....-. ...-.--++.++...|+.++|..+|+++...   .+  .|..++.  .+.|..-. ... ...  .
T Consensus       332 ~~~i~~L~~~~~~-~~rw~YW~aRa~~~~g~~~~A~~~~~~~a~~---~~--fYG~LAa--~~Lg~~~~-~~~-~~~~~~  401 (644)
T PRK11619        332 NTWLARLPMEAKE-KDEWRYWQADLLLEQGRKAEAEEILRQLMQQ---RG--FYPMVAA--QRLGEEYP-LKI-DKAPKP  401 (644)
T ss_pred             HHHHHhcCHhhcc-CHhhHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--cHHHHHH--HHcCCCCC-CCC-CCCCch
Confidence            8888887553222 3333344667777789999999999997531   12  2322221  12232100 000 000  0


Q ss_pred             hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      ...... .-...-+..+...|+..+|...|..+...   .+......++....+.|.++.++....+
T Consensus       402 ~~~~~~-~~~~~ra~~L~~~g~~~~a~~ew~~~~~~---~~~~~~~~la~~A~~~g~~~~ai~~~~~  464 (644)
T PRK11619        402 DSALTQ-GPEMARVRELMYWNMDNTARSEWANLVAS---RSKTEQAQLARYAFNQQWWDLSVQATIA  464 (644)
T ss_pred             hhhhcc-ChHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHHCCCHHHHHHHHhh
Confidence            000000 11233456678889999999999988864   3445566777777788888888766654

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=86.47  E-value=1.1  Score=24.08  Aligned_cols=15  Identities=27%  Similarity=0.257  Sum_probs=5.8

Q ss_pred             HHHHHHcCCHHHHHH
Q 045674          573 ITCLCKTGRIKEACK  587 (650)
Q Consensus       573 ~~~~~~~g~~~~A~~  587 (650)
                      +.++...|++++|..
T Consensus         8 a~~~~~~G~~~eA~~   22 (26)
T PF07721_consen    8 ARALLAQGDPDEAER   22 (26)
T ss_pred             HHHHHHcCCHHHHHH
Confidence            333333333333333

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]

Probab=86.31  E-value=24  Score=31.58  Aligned_cols=80  Identities=16%  Similarity=0.184  Sum_probs=44.0

Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-C------------CCcHHHHHHHHHHHHHcCCHHHH
Q 045674          519 LWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK-G------------IIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       519 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~------------~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      +.+-....++.-+..-+..++  +-..|+..+|+..++.-..- |            .+.+.....++. .|..+++++|
T Consensus       181 l~~v~k~Ekv~yt~dgLeaii--fta~GDMRQalNnLQst~~g~g~Vn~enVfKv~d~PhP~~v~~ml~-~~~~~~~~~A  257 (333)
T KOG0991|consen  181 LLEVAKAEKVNYTDDGLEAII--FTAQGDMRQALNNLQSTVNGFGLVNQENVFKVCDEPHPLLVKKMLQ-ACLKRNIDEA  257 (333)
T ss_pred             HHHHHHHhCCCCCcchHHHhh--hhccchHHHHHHHHHHHhccccccchhhhhhccCCCChHHHHHHHH-HHHhccHHHH
Confidence            333333344444444444443  44567777777777665531 1            112333333333 3456678888


Q ss_pred             HHHHHHHHHcCCCCCH
Q 045674          586 CKLADGIVDREREIPG  601 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~  601 (650)
                      .+++.++.+.|+.|..
T Consensus       258 ~~il~~lw~lgysp~D  273 (333)
T KOG0991|consen  258 LKILAELWKLGYSPED  273 (333)
T ss_pred             HHHHHHHHHcCCCHHH
Confidence            8888888888866543

>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B

Probab=86.30  E-value=9.4  Score=28.53  Aligned_cols=62  Identities=16%  Similarity=0.089  Sum_probs=39.2

Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHH
Q 045674          521 DMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       521 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~  583 (650)
                      +..++.++. |......++..+...|++++|++.+-.++..++.  +...-..++.++...|.-+
T Consensus        12 ~~~~a~~P~-D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~~   75 (90)
T PF14561_consen   12 EAALAANPD-DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPGD   75 (90)
T ss_dssp             HHHHHHSTT--HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT-
T ss_pred             HHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCCC
Confidence            333444344 6677778888888888888888888888877654  5556666666666666533

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=86.23  E-value=2.2  Score=27.97  Aligned_cols=28  Identities=18%  Similarity=0.254  Sum_probs=16.9

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          569 FEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +..++.++.+.|++++|.++.+.+++..
T Consensus         4 lY~lAig~ykl~~Y~~A~~~~~~lL~~e   31 (53)
T PF14853_consen    4 LYYLAIGHYKLGEYEKARRYCDALLEIE   31 (53)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            3445566666666666666666666653

>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models

Probab=85.92  E-value=1.3  Score=23.80  Aligned_cols=24  Identities=38%  Similarity=0.455  Sum_probs=20.5

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          603 IRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       603 ~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      ....++.++...|++++|..++++
T Consensus         3 a~~~la~~~~~~G~~~eA~~~l~~   26 (26)
T PF07721_consen    3 ARLALARALLAQGDPDEAERLLRR   26 (26)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHhC
Confidence            456789999999999999998763

The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=85.84  E-value=61  Score=35.78  Aligned_cols=40  Identities=0%  Similarity=-0.110  Sum_probs=26.1

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674          295 QACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK  334 (650)
Q Consensus       295 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  334 (650)
                      -.|+.....+-+..+++.+....-..+....+.++..|++
T Consensus       599 l~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e  638 (877)
T KOG2063|consen  599 LNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE  638 (877)
T ss_pred             HHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence            3455666677777777777766555566666666666654

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=85.51  E-value=31  Score=32.03  Aligned_cols=61  Identities=13%  Similarity=0.125  Sum_probs=53.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      ++......|..+|.+.+|..+.++++..++-+...+..++..|...|+--.|.+-|+++.+
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~  341 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE  341 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence            3455667889999999999999999999988999999999999999998888888877653

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=85.26  E-value=7.1  Score=29.16  Aligned_cols=46  Identities=15%  Similarity=0.142  Sum_probs=28.9

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674          515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP  560 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  560 (650)
                      ++.+-++.+....+.|++....+.+++|.+.+++.-|.++++.+..
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~   70 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKD   70 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            4444455555555666666666666666666677667766666653

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=84.81  E-value=15  Score=34.25  Aligned_cols=98  Identities=14%  Similarity=0.182  Sum_probs=54.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG---CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTI  502 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  502 (650)
                      ...+...++..-....+++.++..+-.+...-   ..++.. ....++.+ -.-+.++++.++..=+..|+-||..+++.
T Consensus        63 s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~-~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~~c~  140 (418)
T KOG4570|consen   63 SSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWT-IHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFTFCL  140 (418)
T ss_pred             ceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhcccc-HHHHHHHH-HccChHHHHHHHhCcchhccccchhhHHH
Confidence            33344444444444566666666665555421   011111 11222222 23455667777766677777777777777


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 045674          503 LINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      ++..+.+.+++.+|..+...|..
T Consensus       141 l~D~flk~~n~~~aa~vvt~~~~  163 (418)
T KOG4570|consen  141 LMDSFLKKENYKDAASVVTEVMM  163 (418)
T ss_pred             HHHHHHhcccHHHHHHHHHHHHH
Confidence            77777777777777776666654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=84.41  E-value=8.5  Score=36.17  Aligned_cols=99  Identities=18%  Similarity=0.154  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGI-TP--TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMI  573 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  573 (650)
                      ...|--=+.-|.+.+++..|...|.+.++... .|  +...|+.-+.+-...|++..|+.=-.++...+|.....+..=+
T Consensus        81 Aen~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~A  160 (390)
T KOG0551|consen   81 AENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGA  160 (390)
T ss_pred             HHHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhh
Confidence            44555667778888889999999988885422 23  3455666666666778898888888888888888888888888


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Q 045674          574 TCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .|+....++++|....+..++.
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Confidence            8888888999999888888654

>PRK09687 putative lyase; Provisional

Probab=84.37  E-value=37  Score=32.03  Aligned_cols=23  Identities=13%  Similarity=0.315  Sum_probs=10.7

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          432 SLIDGLGKAGRVDEAEELFEEMVE  455 (650)
Q Consensus       432 ~l~~~~~~~~~~~~A~~~~~~~~~  455 (650)
                      ..+.++...|+. +|...+..+..
T Consensus       240 ~a~~ALg~ig~~-~a~p~L~~l~~  262 (280)
T PRK09687        240 LIIEAAGELGDK-TLLPVLDTLLY  262 (280)
T ss_pred             HHHHHHHhcCCH-hHHHHHHHHHh
Confidence            344444444542 34555554444

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=84.17  E-value=8.3  Score=33.89  Aligned_cols=75  Identities=12%  Similarity=0.067  Sum_probs=57.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHH
Q 045674          536 RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER--EIPGKIRTALINA  610 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~  610 (650)
                      ...+..+.+.+..++|+...+.-++..|.+...-..+.+.||-.|+|++|..-++-+-+...  .+....|..++.+
T Consensus         5 ~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           5 RDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            34455677889999999999999998888888888899999999999999988888776531  1223455555543

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=84.08  E-value=21  Score=36.69  Aligned_cols=150  Identities=17%  Similarity=0.142  Sum_probs=84.3

Q ss_pred             hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674          334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ  413 (650)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  413 (650)
                      -.|+++.|..++..+.+       ...+.++..+.+.|-.++|+++         .+|....   .....+.|+++.|.+
T Consensus       598 mrrd~~~a~~vLp~I~k-------~~rt~va~Fle~~g~~e~AL~~---------s~D~d~r---Felal~lgrl~iA~~  658 (794)
T KOG0276|consen  598 LRRDLEVADGVLPTIPK-------EIRTKVAHFLESQGMKEQALEL---------STDPDQR---FELALKLGRLDIAFD  658 (794)
T ss_pred             hhccccccccccccCch-------hhhhhHHhHhhhccchHhhhhc---------CCChhhh---hhhhhhcCcHHHHHH
Confidence            34666666655443331       2233455556666666666653         2222211   122345677777766


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          414 YFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC  493 (650)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  493 (650)
                      +..+..      +..-|..|.++..+.+++..|.+.|.....         |..|+-.+...|+-+....+-....+.|.
T Consensus       659 la~e~~------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g~  723 (794)
T KOG0276|consen  659 LAVEAN------SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQGK  723 (794)
T ss_pred             HHHhhc------chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhcc
Confidence            654432      445577777777777777777777766543         34455556666766655555555555543


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          494 DQTVYTYTILINGMFKEHRNEEALKLWDMM  523 (650)
Q Consensus       494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  523 (650)
                      . |.     -..+|...|+++++.+++.+-
T Consensus       724 ~-N~-----AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  724 N-NL-----AFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             c-ch-----HHHHHHHcCCHHHHHHHHHhc
Confidence            2 22     223456677777777776554

>smart00028 TPR Tetratricopeptide repeats

Probab=83.70  E-value=2.4  Score=23.38  Aligned_cols=28  Identities=18%  Similarity=0.196  Sum_probs=19.3

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .+..++.++...|++++|...++++++.
T Consensus         3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~   30 (34)
T smart00028        3 ALYNLGNAYLKLGDYDEALEYYEKALEL   30 (34)
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence            4566677777777777777777776654

Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=82.99  E-value=12  Score=28.09  Aligned_cols=60  Identities=8%  Similarity=0.164  Sum_probs=39.2

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          165 RVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN  225 (650)
Q Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  225 (650)
                      ++++.+..+...+..|++.+..+.++++.+.+++..|+.+|+-++.. +..+...|..++.
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K-~~~~~~~y~~~lq   84 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK-CGAHKEIYPYILQ   84 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccCchhhHHHHHH
Confidence            45666666666666777777777777777777777777777766643 1223445555553

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]

Probab=82.77  E-value=44  Score=31.60  Aligned_cols=133  Identities=13%  Similarity=0.095  Sum_probs=68.8

Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCCcHH
Q 045674          493 CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARACKILDELAPK----GIIPET  567 (650)
Q Consensus       493 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~  567 (650)
                      +..|...++.|..+  ...+.++--+..+++.+. |-.--...+...+..|++.|+.+.|.+.+.+..+.    |..-..
T Consensus        66 i~~D~~~l~~m~~~--neeki~eld~~iedaeenlGE~ev~ea~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDV  143 (393)
T KOG0687|consen   66 IKLDQDLLNSMKKA--NEEKIKELDEKIEDAEENLGESEVREAMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDV  143 (393)
T ss_pred             eeccHHHHHHHHHh--hHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhh
Confidence            34455555554432  122333333333444432 21112345667777888999999998888776654    333112


Q ss_pred             HH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          568 AF--EDMITCLCKTGRIKEACKLADGIVDREREIPG----KIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       568 ~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      ++  ..++-.|....-..+-++..+.+.+.|-.-+.    .+|..+  -|....++.+|-.+|-..+.
T Consensus       144 vf~~iRlglfy~D~~lV~~~iekak~liE~GgDWeRrNRlKvY~Gl--y~msvR~Fk~Aa~Lfld~vs  209 (393)
T KOG0687|consen  144 VFYKIRLGLFYLDHDLVTESIEKAKSLIEEGGDWERRNRLKVYQGL--YCMSVRNFKEAADLFLDSVS  209 (393)
T ss_pred             HHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCChhhhhhHHHHHHH--HHHHHHhHHHHHHHHHHHcc
Confidence            22  22444444444455555555556665533222    222222  24556788888888776654

>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]

Probab=82.70  E-value=12  Score=35.20  Aligned_cols=98  Identities=14%  Similarity=0.034  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          463 YCYNVLIDALAKCGKLDEALALFKRMEDEGC---DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS  539 (650)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~  539 (650)
                      ..|---++-|.+..++..|...|.+-++..+   ..+.+.|+.-..+-...|++..|+.=...+....+. ....+..-+
T Consensus        82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~-h~Ka~~R~A  160 (390)
T KOG0551|consen   82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPT-HLKAYIRGA  160 (390)
T ss_pred             HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcc-hhhhhhhhh
Confidence            4566667788889999999999998877543   235566777676777889999998888888775443 344555556


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhC
Q 045674          540 IGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      .++....++++|..+.++....
T Consensus       161 kc~~eLe~~~~a~nw~ee~~~~  182 (390)
T KOG0551|consen  161 KCLLELERFAEAVNWCEEGLQI  182 (390)
T ss_pred             HHHHHHHHHHHHHHHHhhhhhh
Confidence            6777788888888888777543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=82.69  E-value=19  Score=27.36  Aligned_cols=76  Identities=9%  Similarity=0.118  Sum_probs=44.2

Q ss_pred             HHHHHHHHHHhcCChh--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          149 CYISLIDCLALCGDVD--RVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMN  225 (650)
Q Consensus       149 ~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~  225 (650)
                      .|..--..+....+.|  +.++-+..+...+..|++.+..+.+.++.+.+++..|+.+|+-++.. +......|..++.
T Consensus        10 eF~ary~~~F~~~~iD~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K-~~~~~~~Y~~~lq   87 (108)
T PF02284_consen   10 EFDARYEKYFNRPDIDGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK-CGNKKEIYPYILQ   87 (108)
T ss_dssp             HHHHHHHHHHH-TT--HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TTT-TTHHHHHHH
T ss_pred             HHHHHHHHHhCCccccHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-ccChHHHHHHHHH
Confidence            3333333444433333  56667777777777788888888888888888888888888877765 2222226666554

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.64  E-value=36  Score=30.53  Aligned_cols=57  Identities=5%  Similarity=0.088  Sum_probs=32.1

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHH------HHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          508 FKEHRNEEALKLWDMMIDKGITPTAASF------RALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      ...+++.+|+.+|++.....+..+.--|      ...+-++.-..+.-.+...+++..+..|.
T Consensus       165 a~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~~dP~  227 (288)
T KOG1586|consen  165 AQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQELDPA  227 (288)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHhcCCc
Confidence            3567788888888887765444222222      11122222335665666677777777665

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=82.27  E-value=21  Score=32.82  Aligned_cols=87  Identities=14%  Similarity=0.085  Sum_probs=42.3

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----
Q 045674          399 ISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----  474 (650)
Q Consensus       399 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----  474 (650)
                      |.+++..|+|.+++.+.-+--+.--+....+...-|-.|.+.++...+.++-...+..--..+...|..++..|..    
T Consensus        90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl  169 (309)
T PF07163_consen   90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL  169 (309)
T ss_pred             HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence            4455556666665555443333222223334444455566666666666666555553212222334444444433    


Q ss_pred             -cCCHHHHHHHH
Q 045674          475 -CGKLDEALALF  485 (650)
Q Consensus       475 -~g~~~~A~~~~  485 (650)
                       .|.+++|+++.
T Consensus       170 PLG~~~eAeelv  181 (309)
T PF07163_consen  170 PLGHFSEAEELV  181 (309)
T ss_pred             ccccHHHHHHHH
Confidence             46666666555

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]

Probab=82.20  E-value=2.6  Score=38.92  Aligned_cols=78  Identities=8%  Similarity=-0.043  Sum_probs=52.4

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED-MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN  609 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  609 (650)
                      |...|...+....+.|.+.+.-.++.++....|.+.+.|.. -..-+...++++.+..++.+.++.+ +.++.+|.....
T Consensus       106 D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N-~~~p~iw~eyfr  184 (435)
T COG5191         106 DPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMN-SRSPRIWIEYFR  184 (435)
T ss_pred             CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccC-CCCchHHHHHHH
Confidence            55555555555556667777777777777777777776654 4455667777888888888877776 556666655443

>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=82.18  E-value=81  Score=34.33  Aligned_cols=97  Identities=12%  Similarity=0.078  Sum_probs=62.0

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCC-------cHHHHHHHHHHHH---------------HcCCHHHHHHHHHHHHHcCCCCC
Q 045674          543 CLSGKVARACKILDELAPKGII-------PETAFEDMITCLC---------------KTGRIKEACKLADGIVDREREIP  600 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~---------------~~g~~~~A~~~~~~~~~~~~~~~  600 (650)
                      ...|++.+|.+.|..++-.-+.       +..-...++..++               ..+..+++.++..-.-..+..|-
T Consensus      1002 tt~gKf~eAie~Frsii~~i~l~vvd~~~e~aea~~li~i~~eYi~gL~~E~~Rr~l~~~~~~~~~ElAaYFt~~~Lqp~ 1081 (1202)
T KOG0292|consen 1002 TTEGKFGEAIEKFRSIIYSIPLLVVDSKEEEAEADELIKICREYIVGLSVELERRKLKKPNLEQQLELAAYFTHCKLQPM 1081 (1202)
T ss_pred             hccCcHHHHHHHHHHHHhheeEEEecchhhHHHHHHHHHHHHHHHhhheeeeeecccCCchHHHHHHHHHHhhcCCCCcH
Confidence            4678999999999887743221       2222223333321               23445666555544444455554


Q ss_pred             HH--HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhh
Q 045674          601 GK--IRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIK  639 (650)
Q Consensus       601 ~~--~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  639 (650)
                      ..  +....++.+.+.+++..|-.+..++++.++.|+....
T Consensus      1082 H~ilalrtA~n~ffK~kN~ktAs~fa~rLlel~~~~~~A~q 1122 (1202)
T KOG0292|consen 1082 HRILALRTAMNVFFKLKNLKTAAEFARRLLELAPSPPVAEQ 1122 (1202)
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCChHHHH
Confidence            43  4456678899999999999999999999998765543

>PRK10941 hypothetical protein; Provisional

Probab=82.12  E-value=13  Score=34.72  Aligned_cols=61  Identities=5%  Similarity=-0.038  Sum_probs=32.1

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +-.+|.+.++++.|.++.+.++... |.++.-+.--+-.|.+.|.+..|..-++..++..++
T Consensus       187 LK~~~~~~~~~~~AL~~~e~ll~l~-P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~  247 (269)
T PRK10941        187 LKAALMEEKQMELALRASEALLQFD-PEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPE  247 (269)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCC
Confidence            4444555555555555555555554 444444444455555555555555555555555544

>TIGR02508 type_III_yscG type III secretion protein, YscG family

Probab=81.62  E-value=20  Score=27.03  Aligned_cols=80  Identities=15%  Similarity=0.116  Sum_probs=50.7

Q ss_pred             CCChhHHHHHHHHHHHcCCCCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHH
Q 045674          124 SKRPNVGLRLFTWAARQKKYSHNLE-CYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL  202 (650)
Q Consensus       124 ~~~~~~al~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  202 (650)
                      ....++|..+.+|....+.   ..+ +-..-+..+...|++++|..+.+.+    ..||...|.+|...  +.|..+.+.
T Consensus        18 ~HcHqEA~tIAdwL~~~~~---~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~----~~pdlepw~ALce~--rlGl~s~l~   88 (115)
T TIGR02508        18 HHCHQEANTIADWLHLKGE---SEEAVQLIRLSSLMNRGDYQSALQLGNKL----CYPDLEPWLALCEW--RLGLGSALE   88 (115)
T ss_pred             chHHHHHHHHHHHHhcCCc---hHHHHHHHHHHHHHccchHHHHHHhcCCC----CCchHHHHHHHHHH--hhccHHHHH
Confidence            3457788888888876532   122 2223345567778888887776655    25677777666543  566666777


Q ss_pred             HHHHHHHHCC
Q 045674          203 WVWRSMKENG  212 (650)
Q Consensus       203 ~~~~~~~~~~  212 (650)
                      ..+.++...|
T Consensus        89 ~rl~rla~sg   98 (115)
T TIGR02508        89 SRLNRLAASG   98 (115)
T ss_pred             HHHHHHHhCC
Confidence            7777776664

YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.

>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins

Probab=80.89  E-value=25  Score=32.43  Aligned_cols=87  Identities=11%  Similarity=0.001  Sum_probs=51.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-cHHHHHHHH-----HHH
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII-PETAFEDMI-----TCL  576 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~-----~~~  576 (650)
                      =|.+++..+++.+++...-+--+.--+-...++..-+-.|.+.|....+.++-..-....-. ...-|..++     +++
T Consensus        89 GIQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VL  168 (309)
T PF07163_consen   89 GIQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVL  168 (309)
T ss_pred             hHHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHH
Confidence            36777888888887765444332111112334444455678888888877777766643111 222254444     444


Q ss_pred             HHcCCHHHHHHHH
Q 045674          577 CKTGRIKEACKLA  589 (650)
Q Consensus       577 ~~~g~~~~A~~~~  589 (650)
                      .-.|.+++|+++.
T Consensus       169 lPLG~~~eAeelv  181 (309)
T PF07163_consen  169 LPLGHFSEAEELV  181 (309)
T ss_pred             hccccHHHHHHHH
Confidence            5578888888887

Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane

>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane

Probab=80.44  E-value=11  Score=26.99  Aligned_cols=48  Identities=10%  Similarity=0.081  Sum_probs=24.4

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          578 KTGRIKEACKLADGIVDREREIPG--KIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      ...+.++|+..|+++++....+..  .++-.++.+|...|++.+++++..
T Consensus        18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA~   67 (80)
T PF10579_consen   18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFAL   67 (80)
T ss_pred             ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556666666666655322111  133344555666666666555543

Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane

>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A

Probab=80.38  E-value=5.9  Score=25.99  Aligned_cols=32  Identities=22%  Similarity=0.131  Sum_probs=20.5

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674          536 RALSIGLCLSGKVARACKILDELAPKGIIPET  567 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  567 (650)
                      ..++-++.+.|++++|.++.+.+++..|.+..
T Consensus         5 Y~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Q   36 (53)
T PF14853_consen    5 YYLAIGHYKLGEYEKARRYCDALLEIEPDNRQ   36 (53)
T ss_dssp             HHHHHHHHHTT-HHHHHHHHHHHHHHTTS-HH
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHhhCCCcHH
Confidence            34555667777777777777777777666443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	650
4g24_A	501	Crystal Structure Of Proteinaceous Rnase P 1 (Prorp		2e-04

>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From A. Thaliana With Mn Length = 501

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 55/127 (43%), Gaps = 11/127 (8%)
Query: 297 CYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCI----------EGHAIFE 346
           C  +GD    L LY E    G+++  + YN+++  +C + +             G  IF+
Sbjct: 36  CSKKGDVLEALRLYDEARRNGVQLSQYHYNVLL-YVCSLAEAATESSPNPGLSRGFDIFK 94
Query: 347 SMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE 406
            MI     PN A +T              A ++ ++MK  G++P   +YG  + G C+  
Sbjct: 95  QMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKG 154
Query: 407 RLEEAMQ 413
             ++A +
Sbjct: 155 DADKAYE 161

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	650
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-19
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-10
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-18
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	7e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	6e-14
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	2e-11
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	4e-10
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	8e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	7e-09
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-05
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	2e-04
2gw1_A	514	Mitochondrial precursor proteins import receptor;	3e-08
2gw1_A	514	Mitochondrial precursor proteins import receptor;	4e-07
2gw1_A	514	Mitochondrial precursor proteins import receptor;	5e-04
4g1t_A	472	Interferon-induced protein with tetratricopeptide	2e-07
4g1t_A	472	Interferon-induced protein with tetratricopeptide	1e-05
4g1t_A	472	Interferon-induced protein with tetratricopeptide	6e-05
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	3e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	4e-07
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	2e-04
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	3e-07
2kat_A	115	Uncharacterized protein; NESG, structure, structur	6e-07
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	7e-07
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	1e-06
3v6t_A	499	DHAX3; tandem repeats, DNA specific binding protei	7e-07
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	2e-06
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	2e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	4e-06
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	3e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	1e-05
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	3e-05
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	2e-05
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	3e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-05
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	4e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	6e-05
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	5e-04
3tax_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	1e-04
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	1e-04
3k9i_A	117	BH0479 protein; putative protein binding protein,	2e-04
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	2e-04
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	3e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	4e-04
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	7e-04
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	6e-04
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 91.1 bits (225), Expect = 5e-19
 Identities = 67/449 (14%), Positives = 132/449 (29%), Gaps = 123/449 (27%)

Query: 93  DMEAN-LDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYI 151
           D E        +  L      FV     N D     ++   + +    +++  H      
Sbjct: 8   DFETGEHQYQYKDILSVFEDAFV----DNFDCKDVQDMPKSILS----KEEIDH------ 53

Query: 152 SLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELL-----WVWR 206
                +     V     +F  L  K           +++ F     VEE+L     ++  
Sbjct: 54  ----IIMSKDAVSGTLRLFWTLLSKQ--------EEMVQKF-----VEEVLRINYKFLMS 96

Query: 207 SMKENGIEPSLYT--YNFLMNGLVNS------MFIESSELVFKV---MENGKVGPDVVTY 255
            +K    +PS+ T  Y    + L N         +   +   K+   +   +   +V+  
Sbjct: 97  PIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLID 156

Query: 256 NTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE 315
             +  G    GKT  A++   + + +     KI ++ L      E   +    L +++D 
Sbjct: 157 G-V-LG---SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 316 KGIEIPSHAYN------------------------LVIGGLCKV--GKCIEGHAIFESMI 349
                  H+ N                        L++  L  V   K       F    
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNA---FNL-- 264

Query: 350 RRGCQ-----PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGL-C 403
              C+         +   L  +     S++             + PDE    +++  L C
Sbjct: 265 --SCKILLTTRFKQVTDFLSAATTTHISLDH--------HSMTLTPDE-VKSLLLKYLDC 313

Query: 404 KNERL-EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE-ELFEEMVEKGCPRD 461
           + + L  E          N   + ++   S+ DGL           +    ++E      
Sbjct: 314 RPQDLPREV------LTTNPRRL-SIIAESIRDGLATWDNWKHVNCDKLTTIIES----- 361

Query: 462 SYCYNVLIDALAKCGKLDEALALFKRMED 490
               NVL  A  +  K+ + L++F     
Sbjct: 362 --SLNVLEPAEYR--KMFDRLSVF--PPS 384

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 61.4 bits (148), Expect = 8e-10
 Identities = 76/539 (14%), Positives = 162/539 (30%), Gaps = 144/539 (26%)

Query: 8   PFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFNDVSD 67
            F  + +++  +      +        R+   L  +  N      F     V        
Sbjct: 92  KFLMSPIKTEQRQPSMMTR---MYIEQRD--RL--YNDNQV----FAKYN-VSRLQPYLK 139

Query: 68  LVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRK-FLIKLSPNFVSFVLRNHDVSKR 126
           L      L P+  V     L+DG   +         K ++          V  ++ V  +
Sbjct: 140 LRQALLELRPAKNV-----LIDG---VLG-----SGKTWV-------ALDVCLSYKVQCK 179

Query: 127 PNVGLRLFTWA--ARQKKYSHNLE-----CYISLIDCLALCGDVDRVRLVFNELKE--KG 177
            +    +F W            LE      Y    +  +       ++L  + ++   + 
Sbjct: 180 MDFK--IF-WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRR 236

Query: 178 FLMTVSAANSLIKSFGGLGMVEELLWVWRSM-----------------KENGIEPSLYTY 220
            L +    N L+     L  V+     W +                    +    +  + 
Sbjct: 237 LLKSKPYENCLLV----LLNVQN-AKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISL 291

Query: 221 NFLMNGLVNSMFIESSELVFKVMENG---------KVGPDVVTYNTMIKGYCKVGKTQKA 271
           +     L      E   L+ K ++              P  +   ++I            
Sbjct: 292 DHHSMTLTPD---EVKSLLLKYLDCRPQDLPREVLTTNPRRL---SIIA----------- 334

Query: 272 MEKFRAMEAR-----NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMD--EKGIEIPSHA 324
            E  R   A      +V  DK+T  T+I++     +      ++  +        IP+  
Sbjct: 335 -ESIRDGLATWDNWKHVNCDKLT--TIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTIL 391

Query: 325 YNLVIGGLCK------VGKCIEGHAIFESMI-RRGCQPNVAIYTALIDSYAKL---GSMN 374
            +L+   + K      V K  +      S++ ++  +  ++I +  ++   KL    +++
Sbjct: 392 LSLIWFDVIKSDVMVVVNKLHK-----YSLVEKQPKESTISIPSIYLELKVKLENEYALH 446

Query: 375 EAI----NIFERMKYEGVEP---DEVTYGVIISGLCKNERLEEA----MQYFEF------ 417
            +I    NI +    + + P   D+  Y  I   L   E  E      M + +F      
Sbjct: 447 RSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQK 506

Query: 418 CRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG 476
            R +  A NA    S+++ L +        + ++  +    P+     N ++D L K  
Sbjct: 507 IRHDSTAWNAS--GSILNTLQQL-------KFYKPYICDNDPKYERLVNAILDFLPKIE 556

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 52.2 bits (124), Expect = 5e-07
 Identities = 77/530 (14%), Positives = 147/530 (27%), Gaps = 157/530 (29%)

Query: 56  PEWVEPF--NDVSDLVSCPQNLNPSPWVRQILNLLDGSSDMEANLDSFCRKFLIKLSPN- 112
             +V+ F   DV D+   P+++     +  I+   D  S       +   K         
Sbjct: 27  DAFVDNFDCKDVQDM---PKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSK------QEE 77

Query: 113 ----FVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGD------ 162
               FV  VLR        N    +      Q++ S     YI   D   L  D      
Sbjct: 78  MVQKFVEEVLR-------INYKFLMSPIKTEQRQPSMMTRMYIEQRD--RLYNDNQVFAK 128

Query: 163 --VDRVRLVFN------ELKEKGFL----M-----TVSAANSL-----IKSFGG------ 194
             V R++          EL+    +    +     T  A +                   
Sbjct: 129 YNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLN 188

Query: 195 LG-------MVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGK 247
           L        ++E L  +   +  N    S ++ N  +        I S +   + +   K
Sbjct: 189 LKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLR-------IHSIQAELRRLLKSK 241

Query: 248 VGP------DVVTYNTMIKGY---CKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQAC- 297
                      V        +   CK+  T +  +         +     T+++L     
Sbjct: 242 PYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDF-----LSAATTTHISLDHHSM 296

Query: 298 -YLEGDFDSCLSLYHEMDEKGIEIPSHAYN---LVIGGLCKVGKCIEGHAIFESMIRRGC 353
                +  S L  Y +   +  ++P          +             +I    IR G 
Sbjct: 297 TLTPDEVKSLLLKYLDCRPQ--DLPREVLTTNPRRL-------------SIIAESIRDG- 340

Query: 354 QPNVAIYTALIDSYAKLGSMNEA-INIFE----RMKYE--GVEPDEV--TYGVIISGLCK 404
                     ++   KL ++ E+ +N+ E    R  ++   V P        ++ S +  
Sbjct: 341 -LATWDNWKHVN-CDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILL-SLIWF 397

Query: 405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV-------------DEAEELFE 451
           +    + M            VN +   SL++   K   +             +    L  
Sbjct: 398 DVIKSDVMVV----------VNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHR 447

Query: 452 EMVEK-GCPR------------DSYCYNVLIDALAKCGKLDEALALFKRM 488
            +V+    P+            D Y Y+ +   L       E + LF+ +
Sbjct: 448 SIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIE-HPERMTLFRMV 496

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 87.6 bits (215), Expect = 5e-18
 Identities = 30/229 (13%), Positives = 75/229 (32%), Gaps = 5/229 (2%)

Query: 91  SSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECY 150
           S  M   L+   R+         ++ +L+        +V  +  +    Q + S   +  
Sbjct: 72  SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVE-QAPSGQHSQAQLSGQQQRL 130

Query: 151 ISLIDCLALCGDVDRVRLVFNELKE---KGFLMTVSAANSLIKSFGGLGMVEELLWVWRS 207
           ++   C  L   +     +         K  L+T+   N+++  +   G  +EL++V   
Sbjct: 131 LAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFM 190

Query: 208 MKENGIEPSLYTYNFLMNGLVNS-MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG 266
           +K+ G+ P L +Y   +  +        + E   + M    +    +    ++    +  
Sbjct: 191 VKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250

Query: 267 KTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE 315
             +   +           P  +    L++  Y +    S   L+  +  
Sbjct: 251 VLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKT 299

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 86.0 bits (211), Expect = 2e-17
 Identities = 24/209 (11%), Positives = 62/209 (29%), Gaps = 4/209 (1%)

Query: 369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAM 428
           +L S   A  + +  +     P E     ++        L+             ++    
Sbjct: 69  RLLSKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQ 128

Query: 429 FYSSLIDGLGKAGRVDEAEEL---FEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF 485
              +         ++  A  L        +K        YN ++   A+ G   E + + 
Sbjct: 129 RLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVL 188

Query: 486 KRMEDEGCDQTVYTYTILINGMFKEHRNEEAL-KLWDMMIDKGITPTAASFRALSIGLCL 544
             ++D G    + +Y   +  M ++ ++   + +  + M  +G+   A     L      
Sbjct: 189 FMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR 248

Query: 545 SGKVARACKILDELAPKGIIPETAFEDMI 573
           +  +    K+    +    +P       +
Sbjct: 249 ATVLKAVHKVKPTFSLPPQLPPPVNTSKL 277

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 85.6 bits (210), Expect = 2e-17
 Identities = 24/210 (11%), Positives = 67/210 (31%), Gaps = 4/210 (1%)

Query: 267 KTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYN 326
             Q A             P +     L+Q    +   D   +   +  +  +        
Sbjct: 72  SKQMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLL 131

Query: 327 LVIGGLCKVGKCIEGHAI---FESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERM 383
                     +    H +        ++     + +Y A++  +A+ G+  E + +   +
Sbjct: 132 AFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191

Query: 384 KYEGVEPDEVTYGVIISGLCKNERLEEAMQ-YFEFCRANGVAVNAMFYSSLIDGLGKAGR 442
           K  G+ PD ++Y   +  + + ++    ++   E     G+ + A+F + L+    +A  
Sbjct: 192 KDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATV 251

Query: 443 VDEAEELFEEMVEKGCPRDSYCYNVLIDAL 472
           +    ++                + L+  +
Sbjct: 252 LKAVHKVKPTFSLPPQLPPPVNTSKLLRDV 281

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 84.1 bits (206), Expect = 7e-17
 Identities = 15/213 (7%), Positives = 51/213 (23%), Gaps = 4/213 (1%)

Query: 207 SMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG 266
             ++    P       L+      + ++  +         ++           K      
Sbjct: 82  CTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTD 141

Query: 267 KTQKA---MEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH 323
           +   A   +        +        Y  ++     +G F   + +   + + G+     
Sbjct: 142 QLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLL 201

Query: 324 AYNLVIGGLCKVGKCIEG-HAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER 382
           +Y   +  + +  +         E M + G +        L+    +   +     +   
Sbjct: 202 SYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPT 261

Query: 383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYF 415
                  P  V    ++  +   +      +  
Sbjct: 262 FSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLH 294

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 74.5 bits (181), Expect = 6e-14
 Identities = 19/157 (12%), Positives = 50/157 (31%), Gaps = 1/157 (0%)

Query: 171 NELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNS 230
           ++ +  G    + A          L +   LL V    ++     +L  YN +M G    
Sbjct: 119 SQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQ 178

Query: 231 MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEK-FRAMEARNVQPDKIT 289
              +    V  ++++  + PD+++Y   ++   +  +    +E+    M    ++   + 
Sbjct: 179 GAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALF 238

Query: 290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYN 326
              L+          +   +           P    +
Sbjct: 239 TAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} Length = 597

 Score = 66.0 bits (161), Expect = 2e-11
 Identities = 80/606 (13%), Positives = 185/606 (30%), Gaps = 74/606 (12%)

Query: 4   VLRRPFSATLLQSPPKLKLPPYKPGNNVGSPRNMGPLASFTSNPRSANSFPPPEWVEPFN 63
           V R    + +  +P     P         +P +MG L +  SN + +     P      N
Sbjct: 3   VKRTQTDSRMQSTPGNHNHPDAHANAAYMTPPSMGALNANNSNSQLSTLTISPMTYLANN 62

Query: 64  DVSDLVSCPQN--LNPSPWVR-QILNLLDGSSDMEANLDS--FCRKFLIKLSPNFVSFVL 118
             +D     +    N     R   L L    + M+       F  + ++ ++ N      
Sbjct: 63  TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLDITGNPNDAFW 122

Query: 119 --RNHDVSKRPNVGLRLFTWAARQKKYSHNL----ECYISLID---CLALCGDVDRVRLV 169
             + +  +        L T      + S        C + L D    L L G+ +  R  
Sbjct: 123 LAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKD 182

Query: 170 FNE-----LKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLY-TYNFL 223
                   +++ G  +  S      + +  L   +     ++      ++   Y  ++ L
Sbjct: 183 EKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALM--VDAKCYEAFDQL 240

Query: 224 MNGLVNS---MFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEA 280
           ++  + +    +    +L +              Y   +       + ++A +   ++  
Sbjct: 241 VSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSIN- 299

Query: 281 RNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI-PSH--AYNLVIGGLCKVGK 337
             ++      +      ++   F   L++      K +EI P +   Y L +  L + G+
Sbjct: 300 -GLEKSSDLLLCKADTLFVRSRFIDVLAIT----TKILEIDPYNLDVYPLHLASLHESGE 354

Query: 338 CIEGHAIFESMIRRGCQPNVAI-YTALIDSYAKLGSMNEAINIFER---MKYEGVEPDEV 393
             + + I   ++ R   P  A+ + A+   Y  +  ++EA   F +   M      P   
Sbjct: 355 KNKLYLISNDLVDR--HPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-----PQFG 407

Query: 394 T----YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA----GRVDE 445
                +             ++A+  +    A    +    +   +  LG      G +  
Sbjct: 408 PAWIGFAHS---FAIEGEHDQAISAYT--TA--ARLFQGTHLPYL-FLGMQHMQLGNILL 459

Query: 446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR-----MEDEGCDQT-VYT 499
           A E  +         D    N L         +  A+  F+       + +  ++    T
Sbjct: 460 ANEYLQSSYAL-FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAAT 518

Query: 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS-FRALSIGLCLSGKVARACKILD-- 556
           +  L +   K    + A+   +  +   ++   A+   A+++          A   L   
Sbjct: 519 WANLGHAYRKLKMYDAAIDALNQGLL--LSTNDANVHTAIALVYLHKKIPGLAITHLHES 576

Query: 557 -ELAPK 561
             ++P 
Sbjct: 577 LAISPN 582

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} Length = 291

 Score = 60.5 bits (146), Expect = 4e-10
 Identities = 29/232 (12%), Positives = 73/232 (31%), Gaps = 13/232 (5%)

Query: 259 IKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGI 318
           +K    +G  Q+ + + + ++  + + D    + L +A   +  +   L          +
Sbjct: 6   VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPSSAPEL 65

Query: 319 EIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP-NVAIYTALIDSYAKLGSMNEAI 377
           +    A  +    L    +     A  +  + R     N          Y    + + A+
Sbjct: 66  Q----AVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAAL 121

Query: 378 NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFC-RANGVAVNAMFYSSLIDG 436
               +              + +  L K +RL+ A +  +     +  A      ++ +  
Sbjct: 122 RTLHQGD------SLECMAMTVQILLKLDRLDLARKELKKMQDQDEDATLTQLATAWVSL 175

Query: 437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM 488
                ++ +A  +F+EM +K C       N         G+ + A  + +  
Sbjct: 176 AAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEA 226

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 60.8 bits (148), Expect = 4e-10
 Identities = 63/355 (17%), Positives = 110/355 (30%), Gaps = 57/355 (16%)

Query: 266 GKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI-PSH- 323
           G   K  E         +Q +    ++L +  Y   DF  C  L        +E  P H 
Sbjct: 1   GSYNKPSETVIPESVDGLQENLDVVVSLAERHYYNCDFKMCYKLT----SVVMEKDPFHA 56

Query: 324 -AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAI-YTALIDSYAKLGSMNE-AINIF 380
               + IG L ++ K  E   +   ++     P+  + + A+   Y  +G  NE A    
Sbjct: 57  SCLPVHIGTLVELNKANELFYLSHKLVDL--YPSNPVSWFAVGCYYLMVGHKNEHARRYL 114

Query: 381 ER---MKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL 433
            +   ++              YG            ++AM  +    A    +    +  +
Sbjct: 115 SKATTLE-----KTYGPAWIAYGHS---FAVESEHDQAMAAYF--TA--AQLMKGCHLPM 162

Query: 434 IDGLGKA----GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR-- 487
           +  +G           AE  F + +    P D +  + +     + G+   A   F    
Sbjct: 163 L-YIGLEYGLTNNSKLAERFFSQALSI-APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220

Query: 488 --MEDEGCDQTVYTYTILINGM----FKEHRNEEALKLWDMMIDKGITPTAASFRALS-I 540
             ++  G + TV  +  L+N +     K  +  EAL      +   + P  AS    S I
Sbjct: 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALV--LIPQNAS--TYSAI 276

Query: 541 GLCLS--GKVARACKILD---ELAPKGIIPETAFEDMITCLCKTGRIKEACKLAD 590
           G   S  G    A         L         +   +  C+       EA   AD
Sbjct: 277 GYIHSLMGNFENAVDYFHTALGLRRDDTF---SVTMLGHCIEMYIGDSEAYIGAD 328

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} Length = 330

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 38/296 (12%), Positives = 89/296 (30%), Gaps = 80/296 (27%)

Query: 250 PDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLE-GDFDSCLS 308
            DV    ++ + +      +   +           P   + + +     +E    +    
Sbjct: 22  LDV--VVSLAERHYYNCDFKMCYKLTS--VVMEKDPFHASCLPVHIGTLVELNKANELFY 77

Query: 309 LYHEMDEKGIEI-PSHA---YNLVIGGLC--KVGKCIE---------------------- 340
           L H++    +++ PS+    + +   G     VG   E                      
Sbjct: 78  LSHKL----VDLYPSNPVSWFAV---GCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIA 130

Query: 341 -GH----------AI--FESMIRRGCQPNVAI-YTALIDSYAKLGSMNEAINIFER---M 383
            GH          A+  + +  +        +    +   Y    +   A   F +   +
Sbjct: 131 YGHSFAVESEHDQAMAAYFTAAQ--LMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188

Query: 384 KYEGVEPDEVT----YGVIISGLCKNERLEEAMQYF----EFCRANGVAVNAMFYSSLID 435
                 P++       GV+     +N   + A ++F    E  +A G  V    +  L++
Sbjct: 189 A-----PEDPFVMHEVGVV---AFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240

Query: 436 GLGKA----GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
            LG       +  EA +   + +    P+++  Y+ +    +  G  + A+  F  
Sbjct: 241 NLGHVCRKLKKYAEALDYHRQALVL-IPQNASTYSAIGYIHSLMGNFENAVDYFHT 295

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 57.4 bits (139), Expect = 7e-09
 Identities = 39/263 (14%), Positives = 72/263 (27%), Gaps = 43/263 (16%)

Query: 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLY 310
             +        +        A    +  E+ N+ P   +Y+ L      + +       +
Sbjct: 242 AALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTLADKENSQEFFKFF 299

Query: 311 HEMDEKGIEI-PSHA---YNLVIGG--LCKVGKCIEGHAIFESMIRRGCQPNVAI-YTAL 363
               +K +++ P +    Y+    G     +         F+        P     Y  L
Sbjct: 300 ----QKAVDLNPEYPPTYYHR---GQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQL 350

Query: 364 IDSYAKLGSMNEAINIFERMKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYFE--- 416
                K G   E+   F   K     P        +  I   L      + A++ ++   
Sbjct: 351 ACLLYKQGKFTESEAFFNETKL--KFPTLPEVPTFFAEI---LTDRGDFDTAIKQYDIAK 405

Query: 417 ----------FCRAN--GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC 464
                            G A      SS         + + A +L  +  E   PR    
Sbjct: 406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACEL-DPRSEQA 464

Query: 465 YNVLIDALAKCGKLDEALALFKR 487
              L     +  K+DEA+ LF+ 
Sbjct: 465 KIGLAQLKLQMEKIDEAIELFED 487

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 46.6 bits (111), Expect = 2e-05
 Identities = 32/198 (16%), Positives = 68/198 (34%), Gaps = 12/198 (6%)

Query: 294 IQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGC 353
           + +     ++D+  +L  +  ++        Y +    L K         +  + +    
Sbjct: 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS-LLSANTVDDPL 238

Query: 354 QPNVAI-YTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAM 412
           + N A+        +    ++ +A  + +  +   + P   +Y  +   L   E  +E  
Sbjct: 239 RENAALALCYTGIFHFLKNNLLDAQVLLQ--ESINLHPTPNSYIFLALTLADKENSQEFF 296

Query: 413 QYFEFCRANGVAVN---AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI 469
           ++F+  +A  V +N      Y               A+E F++      P + Y Y  L 
Sbjct: 297 KFFQ--KA--VDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL-NPENVYPYIQLA 351

Query: 470 DALAKCGKLDEALALFKR 487
             L K GK  E+ A F  
Sbjct: 352 CLLYKQGKFTESEAFFNE 369

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A Length = 537

 Score = 43.2 bits (102), Expect = 2e-04
 Identities = 21/127 (16%), Positives = 42/127 (33%), Gaps = 16/127 (12%)

Query: 402 LCKNERLEEAMQYFEFCRANGVAV-----NAMFYSSLIDGLGKAGRVDEAEELFEEMVE- 455
               +   EA++Y+++      A+       +FYS++       G +++  E   + +E 
Sbjct: 35  FFTAKNFNEAIKYYQY------AIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEI 88

Query: 456 KGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE--HRN 513
           K  P  S        A    G   +A+     +   G         +L   + K+     
Sbjct: 89  K--PDHSKALLRRASANESLGNFTDAMFDLSVLSLNGDFDGASIEPMLERNLNKQAMKVL 146

Query: 514 EEALKLW 520
            E L   
Sbjct: 147 NENLSKD 153

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 55.5 bits (134), Expect = 3e-08
 Identities = 35/248 (14%), Positives = 77/248 (31%), Gaps = 42/248 (16%)

Query: 262 YCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI- 320
                    A E  +  +A  + P   +Y+ +        D     + +    +K +++ 
Sbjct: 247 KFLKNDPLGAHEDIK--KAIELFPRVNSYIYMALIMADRNDSTEYYNYF----DKALKLD 300

Query: 321 PSHA---YNLVIGGLC--KVGKCIEGHAI--FESMIRRGCQPNVAI-YTALIDSYAKLGS 372
            +++   Y+    G     +    +  A   F+        P     Y  L     +   
Sbjct: 301 SNNSSVYYHR---GQMNFILQNYDQ--AGKDFDKAKEL--DPENIFPYIQLACLAYRENK 353

Query: 373 MNEAINIFERMKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYFE--------FCRA 420
            ++   +F   K     P+       +  I   L      ++A++ ++            
Sbjct: 354 FDDCETLFSEAKR--KFPEAPEVPNFFAEI---LTDKNDFDKALKQYDLAIELENKLDGI 408

Query: 421 -NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD 479
             G+A   +  ++L+          EA  L E+  +   PR       L     +   +D
Sbjct: 409 YVGIA-PLVGKATLLTRNPTVENFIEATNLLEKASKL-DPRSEQAKIGLAQMKLQQEDID 466

Query: 480 EALALFKR 487
           EA+ LF+ 
Sbjct: 467 EAITLFEE 474

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 52.1 bits (125), Expect = 4e-07
 Identities = 36/243 (14%), Positives = 71/243 (29%), Gaps = 58/243 (23%)

Query: 255 YNTMIKGYCK-VGKTQKAMEKFRAMEARNVQPDK-ITYMTLIQACYLEGDFDSCLSLYHE 312
           Y+   + + K     ++ ++K    E   ++    I+        +L+ D          
Sbjct: 205 YDKADESFTKAARLFEEQLDKNN--EDEKLKEKLAISLEHTGIFKFLKNDPLGAHEDI-- 260

Query: 313 MDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGS 372
             +K IE+                                  P V  Y  +    A    
Sbjct: 261 --KKAIEL---------------------------------FPRVNSYIYMALIMADRND 285

Query: 373 MNEAINIFERMKYEGVEPDEVTY----GVIISGLCKNERLEEAMQYFEFCRANGVAVN-- 426
             E  N F+  K   ++ +  +     G +       +  ++A + F+  +A    ++  
Sbjct: 286 STEYYNYFD--KALKLDSNNSSVYYHRGQM---NFILQNYDQAGKDFD--KA--KELDPE 336

Query: 427 -AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF 485
               Y  L     +  + D+ E LF E   K  P      N   + L      D+AL  +
Sbjct: 337 NIFPYIQLACLAYRENKFDDCETLFSEAKRK-FPEAPEVPNFFAEILTDKNDFDKALKQY 395

Query: 486 KRM 488
              
Sbjct: 396 DLA 398

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} Length = 514

 Score = 42.0 bits (99), Expect = 5e-04
 Identities = 22/127 (17%), Positives = 47/127 (37%), Gaps = 5/127 (3%)

Query: 402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD 461
             +N++ ++A++Y+    A  +  + +FYS+L       G + +  E+  + +E   P  
Sbjct: 16  FFRNKKYDDAIKYYN--WALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDY 72

Query: 462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH--RNEEALKL 519
           S        A    GK  +A+     +   G         +L   + K+   + +E    
Sbjct: 73  SKVLLRRASANEGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGD 132

Query: 520 WDMMIDK 526
            D     
Sbjct: 133 IDTATAT 139

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 52.6 bits (126), Expect = 2e-07
 Identities = 38/245 (15%), Positives = 71/245 (28%), Gaps = 32/245 (13%)

Query: 252 VVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYH 311
               N +       G+ + A+E  R  +A  +   +      I++    G++     +Y+
Sbjct: 51  ATMCNLLAYLKHLKGQNEAALECLR--KAEELIQQEHADQAEIRSLVTWGNY---AWVYY 105

Query: 312 EMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLG 371
            M            + V   + KV    E  +    +       +  +      +  K G
Sbjct: 106 HMGR---------LSDVQIYVDKVKHVCEKFSSPYRI------ESPELDCEEGWTRLKCG 150

Query: 372 SMN--EAINIFERMKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYFEFC-RANGVA 424
                 A   FE  K    +P          +    L      + A+       R N   
Sbjct: 151 GNQNERAKVCFE--KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDN 208

Query: 425 VNAMFY--SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL 482
                     L     +     E E+L EE +EK  P  +           +  + D+A+
Sbjct: 209 QYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRSAAKFYRRKDEPDKAI 267

Query: 483 ALFKR 487
            L K+
Sbjct: 268 ELLKK 272

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 46.9 bits (111), Expect = 1e-05
 Identities = 35/243 (14%), Positives = 75/243 (30%), Gaps = 39/243 (16%)

Query: 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLY 310
                 +  K Y +  +  KA+E  +  +A    P+       I  CY            
Sbjct: 246 VTDVLRSAAKFYRRKDEPDKAIELLK--KALEYIPNNAYLHCQIGCCY------------ 291

Query: 311 HEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVA-IYTALIDSYAK 369
                K  ++ +   N + G    +       A  +         N+  + + L   +A 
Sbjct: 292 ---RAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHAL 346

Query: 370 LGSMNEAINIFER-----MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVA 424
                EA   F++     +     +   + YG     L + +  ++A+ +F       + 
Sbjct: 347 ADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNF--QLYQMKCEDKAIHHFI--EGVKIN 402

Query: 425 VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL 484
             +     + D L         +++ +  + K    DS   +VL        K+ +A   
Sbjct: 403 QKSREKEKMKDKL---------QKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADED 452

Query: 485 FKR 487
            +R
Sbjct: 453 SER 455

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} Length = 472

 Score = 44.9 bits (106), Expect = 6e-05
 Identities = 36/272 (13%), Positives = 82/272 (30%), Gaps = 41/272 (15%)

Query: 262 YCKVGKTQKAMEKFRAMEARNVQPDKI-TYMTLIQACYLEGDF---DSCLSLYHEMDEKG 317
            C   + ++A   F   +A   +P        L  A Y   ++    + +        + 
Sbjct: 148 KCGGNQNERAKVCFE--KALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPL----RQA 201

Query: 318 IEI-PSH--AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQ--PNVA-IYTALIDSYAKLG 371
           I + P +     L+   L K+ +  E     E ++    +  P V  +  +    Y +  
Sbjct: 202 IRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPGVTDVLRSAAKFYRRKD 261

Query: 372 SMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS 431
             ++AI + +  K     P+       I G C   ++ + M   E        +  +   
Sbjct: 262 EPDKAIELLK--KALEYIPNNAYLHCQI-GCCYRAKVFQVMNLRENGMYGKRKLLELIG- 317

Query: 432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR---- 487
                         A    ++  E          ++L    A   + +EA   F++    
Sbjct: 318 -------------HAVAHLKKADEAN-DNLFRVCSILASLHALADQYEEAEYYFQKEFSK 363

Query: 488 -MEDEGCDQTVYTYTILINGMFKEHRNEEALK 518
            +           Y      +++    ++A+ 
Sbjct: 364 ELTPVAKQLLHLRYGNF--QLYQMKCEDKAIH 393

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.8 bits (125), Expect = 3e-07
 Identities = 46/252 (18%), Positives = 96/252 (38%), Gaps = 36/252 (14%)

Query: 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD-KITYMTLIQACYLEGDFDSCLSL 309
                + +      +G+ ++A   +   +A   QP+  + +  L      +G+    +  
Sbjct: 134 LYCVRSDLGNLLKALGRLEEAKACYL--KAIETQPNFAVAWSNLGCVFNAQGEIWLAIHH 191

Query: 310 YHEMDEKGIEI-PSHA---YNLVIGG-LCKVGKCIEGHAIFESMIRRGCQPNVAI-YTAL 363
           +    EK + + P+      NL  G  L +        A +   +     PN A+ +  L
Sbjct: 192 F----EKAVTLDPNFLDAYINL--GNVLKEARIFDRAVAAYLRALSL--SPNHAVVHGNL 243

Query: 364 IDSYAKLGSMNEAINIFER-MKYEGVEPDEVTY----GVIISGLCKNERLEEAMQYFEFC 418
              Y + G ++ AI+ + R ++ +   P               L +   + EA   +   
Sbjct: 244 ACVYYEQGLIDLAIDTYRRAIELQ---PHFPDAYCNLANA---LKEKGSVAEAEDCYN-- 295

Query: 419 RANGVAVN---AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC 475
            A  + +    A   ++L +   + G ++EA  L+ + +E   P  +  ++ L   L + 
Sbjct: 296 TA--LRLCPTHADSLNNLANIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQ 352

Query: 476 GKLDEALALFKR 487
           GKL EAL  +K 
Sbjct: 353 GKLQEALMHYKE 364

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 51.4 bits (124), Expect = 4e-07
 Identities = 24/154 (15%), Positives = 59/154 (38%), Gaps = 22/154 (14%)

Query: 343 AIFESMIRRGCQPNVA-IYTALIDSYAKLGSMNEAINIFER-MKYEGVEPDEVTY----G 396
                + R+  +P+   +   L   + +   ++ + +     +K     P         G
Sbjct: 20  RHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIK---QNPLLAEAYSNLG 74

Query: 397 VIISGLCKNERLEEAMQYFEFCRANGVAVN---AMFYSSLIDGLGKAGRVDEAEELFEEM 453
            +     +  +L+EA++++    A  + +       Y +L   L  AG ++ A + +   
Sbjct: 75  NV---YKERGQLQEAIEHYR--HA--LRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127

Query: 454 VEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
           ++   P      + L + L   G+L+EA A + +
Sbjct: 128 LQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 Length = 388

 Score = 42.9 bits (102), Expect = 2e-04
 Identities = 14/87 (16%), Positives = 32/87 (36%), Gaps = 4/87 (4%)

Query: 402 LCKNERLEEAMQYFEFC-RANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPR 460
             +    E A ++     R        +   S I    +  R+D +       +++  P 
Sbjct: 9   EYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSI--HFQCRRLDRSAHFSTLAIKQN-PL 65

Query: 461 DSYCYNVLIDALAKCGKLDEALALFKR 487
            +  Y+ L +   + G+L EA+  ++ 
Sbjct: 66  LAEAYSNLGNVYKERGQLQEAIEHYRH 92

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} Length = 258

 Score = 51.0 bits (123), Expect = 3e-07
 Identities = 40/238 (16%), Positives = 72/238 (30%), Gaps = 32/238 (13%)

Query: 262 YCKVGKTQKAMEKF-RAMEARNVQPDKITYMTLIQACYLE-GDFDSCLSLYHEMDEKGIE 319
           + K  +  +A+E + +A E   +  D ITY+    A   E G++++ +S         +E
Sbjct: 15  FYKARQFDEAIEHYNKAWE---LHKD-ITYLNNRAAAEYEKGEYETAISTL----NDAVE 66

Query: 320 I-PSH--AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEA 376
                   Y ++     ++G         +  I               D   KL +  + 
Sbjct: 67  QGREMRADYKVISKSFARIGNAYHKLGDLKKTIE--YYQKSLTEHRTADILTKLRNAEKE 124

Query: 377 INIFERMKYEGVEPDEVTY----GVIISGLCKNERLEEAMQYFEFCRANGVAVN---AMF 429
           +   E   Y  V P++       G              A++ +       +      A  
Sbjct: 125 LKKAEAEAY--VNPEKAEEARLEGKE---YFTKSDWPNAVKAYT--EM--IKRAPEDARG 175

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
           YS+    L K     EA     + +EK  P     Y     A     +   AL     
Sbjct: 176 YSNRAAALAKLMSFPEAIADCNKAIEK-DPNFVRAYIRKATAQIAVKEYASALETLDA 232

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} Length = 115

 Score = 47.7 bits (114), Expect = 6e-07
 Identities = 12/83 (14%), Positives = 25/83 (30%), Gaps = 8/83 (9%)

Query: 408 LEEAMQYFEFCRANGVAV---NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC 464
           ++   +  E      +A    N +   +L     +  + D A       ++   P  S  
Sbjct: 1   MQAITERLE--AM--LAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVA 55

Query: 465 YNVLIDALAKCGKLDEALALFKR 487
           +  L   L   G    A   ++ 
Sbjct: 56  WKWLGKTLQGQGDRAGARQAWES 78

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 50.4 bits (120), Expect = 7e-07
 Identities = 23/218 (10%), Positives = 62/218 (28%), Gaps = 8/218 (3%)

Query: 409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL 468
           +   +  ++   +   +      +           DEA  ++E  +     ++   Y   
Sbjct: 51  DIWYEAAQYLEQSSKLLAEKGDMNN-----AKLFSDEAANIYERAISTLLKKNMLLYFAY 105

Query: 469 IDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGI 528
            D      K ++  +++ R+           Y   +    +    +    ++    +   
Sbjct: 106 ADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR 165

Query: 529 TPTAASFRALSIGLCLSGKVARACKILD---ELAPKGIIPETAFEDMITCLCKTGRIKEA 585
           T       A  +    S   + A KI +   +          A+ D ++ L +    +  
Sbjct: 166 TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVL 225

Query: 586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKL 623
            +          E  G+I    +      G+    +K+
Sbjct: 226 FERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 24/157 (15%), Positives = 55/157 (35%), Gaps = 1/157 (0%)

Query: 334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV 393
                 E   I+E  I    + N+ +Y A  D         +  +I+ R+         +
Sbjct: 76  AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTL 135

Query: 394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEM 453
            Y   +    + E ++     F+  R +    + ++ ++ +     +     A ++FE  
Sbjct: 136 VYIQYMKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELG 195

Query: 454 VEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMED 490
           ++K            ID L+   + +    LF+R+  
Sbjct: 196 LKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLT 231

>3v6t_A DHAX3; tandem repeats, DNA specific binding protein, DNA binding DNA complex; HET: DNA; 1.85A {Xanthomonas} PDB: 3v6p_A 2kq5_A Length = 499

 Score = 51.3 bits (123), Expect = 7e-07
 Identities = 26/246 (10%), Positives = 60/246 (24%), Gaps = 24/246 (9%)

Query: 251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKI-TYMTLIQACYLEGDFDSCLSL 309
            VV   +   G   +   Q+ +      +A  + P ++    +              L +
Sbjct: 207 QVVAIASNGGGKQALETVQRLLPVLC--QAHGLTPQQVVAIASNGGGKQALETVQRLLPV 264

Query: 310 YHEMDEKGIEI-PSH--AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN-VAIYTALID 365
                 +   + P    A     GG   +        +          P  V    +   
Sbjct: 265 L----CQAHGLTPQQVVAIASNSGGKQALETVQRLLPVLCQAHGL--TPQQVVAIASNGG 318

Query: 366 SYAKLGSMNEAINIFERMKYEGVEPDE-VTYGVIISGLCKNERLEEAMQYFEFCRANGVA 424
               L ++   + +  +    G+ P + V       G    E ++  +     C+A    
Sbjct: 319 GKQALETVQRLLPVLCQAH--GLTPQQVVAIASHDGGKQALETVQRLLP--VLCQA--HG 372

Query: 425 VN---AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA 481
           +     +  +S   G      V     +  +      P                  +   
Sbjct: 373 LTPEQVVAIASNGGGKQALETVQRLLPVLCQAHGLT-PEQVVAIASHDGGKQALETVQRL 431

Query: 482 LALFKR 487
           L +  +
Sbjct: 432 LPVLCQ 437

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A Length = 252

 Score = 48.4 bits (116), Expect = 2e-06
 Identities = 21/136 (15%), Positives = 35/136 (25%), Gaps = 31/136 (22%)

Query: 367 YAKLGSMNEAINIFER---MKYEGVEPDEVT----YGVIISGLCKNERLEEAMQYFEFCR 419
           +        A   + +                   YG     L + +R EEA Q      
Sbjct: 81  FQTEMEPKLADEEYRKALASD-----SRNARVLNNYGGF---LYEQKRYEEAYQRLL--- 129

Query: 420 ANGVAVNAMFYSSLIDG---LG----KAGRVDEAEELFEEMVE-KGCPRDSYCYNVLIDA 471
               A     Y         LG    +  +  +A+E FE+ +              + D 
Sbjct: 130 ---EASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN--RNQPSVALEMADL 184

Query: 472 LAKCGKLDEALALFKR 487
           L K  +   A   +  
Sbjct: 185 LYKEREYVPARQYYDL 200

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A Length = 368

 Score = 49.3 bits (118), Expect = 2e-06
 Identities = 38/231 (16%), Positives = 71/231 (30%), Gaps = 38/231 (16%)

Query: 282 NVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEI-PSHA---YNLVIGG--LCKV 335
           N   D             EGD  + + L+    E  ++  P H      L   G    + 
Sbjct: 59  NPLRDHPQPFEEGLRRLQEGDLPNAVLLF----EAAVQQDPKHMEAWQYL---GTTQAEN 111

Query: 336 GKCIEGHAIFESMIRRGCQPNVAI-YTALIDSYAKLGSMNEAINIFER-----------M 383
            + +   +     +    +P+      AL  S+       +A  I              +
Sbjct: 112 EQELLAISALRRCLE--LKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLV 169

Query: 384 KYEGVEPDEVTYGV---IISGLCKNERLEEAMQYFEFCRA---NGVAVNAMFYSSLIDGL 437
                       G    I+  L  +    E  + F    A   +  +++      L    
Sbjct: 170 TPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFL--AAVRLDPTSIDPDVQCGLGVLF 227

Query: 438 GKAGRVDEAEELFEEMVE-KGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
             +G  D+A + F   +  +  P D   +N L   LA   + +EA+A ++R
Sbjct: 228 NLSGEYDKAVDCFTAALSVR--PNDYLLWNKLGATLANGNQSEEAVAAYRR 276

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 48.5 bits (116), Expect = 4e-06
 Identities = 39/212 (18%), Positives = 61/212 (28%), Gaps = 33/212 (15%)

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEI-PSHA---YNLVIGG--LCKVGKCIEGHAIFESMI 349
               EGD    +       E  I   P  A     L   G    +           +  +
Sbjct: 74  KRLKEGDLPVTILFM----EAAILQDPGDAEAWQFL---GITQAENENEQAAIVALQRCL 126

Query: 350 RRGCQPNVAI-YTALIDSYAKLGSMNEAINIFER-----MKYE-------GVEPDEVTYG 396
               QPN      AL  SY       +A    +       KY+       G         
Sbjct: 127 E--LQPNNLKALMALAVSYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMS 184

Query: 397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVE- 455
                    E ++E   Y E    NG  ++    + L      +G  + A + F   +  
Sbjct: 185 KSPVDSSVLEGVKEL--YLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV 242

Query: 456 KGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
           +  P D   +N L   LA   + +EA+  + R
Sbjct: 243 R--PEDYSLWNRLGATLANGDRSEEAVEAYTR 272

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} Length = 365

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 14/118 (11%), Positives = 34/118 (28%), Gaps = 2/118 (1%)

Query: 370 LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMF 429
             ++      +++M+ E  E     +            +  + + + F   N    +   
Sbjct: 9   KAAVESDTEFWDKMQAEWEEMARRNWISENQEAQNQVTVSASEKGYYFHTENP-FKDWPG 67

Query: 430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
                    K G +       E  + +  P D+  +  L    A+      A+   +R
Sbjct: 68  AFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQR 124

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 46.9 bits (112), Expect = 1e-05
 Identities = 40/335 (11%), Positives = 92/335 (27%), Gaps = 62/335 (18%)

Query: 296 ACYLEGDFDSCLSLYHEMDEKGIEI-PSHA---YNLVIGGLC--KVGKCIEGHAI--FES 347
                G     LS +H      ++  P +    Y           +GK     A+     
Sbjct: 12  KLLAAGQLADALSQFH----AAVDGDPDNYIAYYRR---ATVFLAMGKSKA--ALPDLTK 62

Query: 348 MIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFE---------------RMKYEGVEPD 391
           +I    + +  A          K G ++EA + F+                 +    +  
Sbjct: 63  VIA--LKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM 120

Query: 392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFE 451
           +      +           A+ + +      V  +A       +   K G   +A    +
Sbjct: 121 QRLRSQALD-AFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLK 178

Query: 452 EMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR-----------MEDEGCDQTVYTY 500
              +     ++  +  +     + G  + +L+  +                   + +   
Sbjct: 179 AASKL-KSDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKL 237

Query: 501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS---IGLCLS--GKVARACKIL 555
                 + ++ R  +A   ++ ++     P+ A +   S   I  C S   K   A +I 
Sbjct: 238 IESAEELIRDGRYTDATSKYESVMK--TEPSVAEYTVRSKERICHCFSKDEKPVEAIRIC 295

Query: 556 D---ELAPKGIIPETAFEDMITCLCKTGRIKEACK 587
               ++ P  +    A +D            EA +
Sbjct: 296 SEVLQMEPDNVN---ALKDRAEAYLIEEMYDEAIQ 327

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} Length = 359

 Score = 45.7 bits (109), Expect = 3e-05
 Identities = 29/269 (10%), Positives = 73/269 (27%), Gaps = 47/269 (17%)

Query: 255 YNTMIKGYCKVGKTQKAMEKFRAMEARNVQPD----------------KITYMTLIQACY 298
                    K GK  +A + F+  +     P                      +     +
Sbjct: 74  RLQRGHLLLKQGKLDEAEDDFK--KVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAF 131

Query: 299 LEGDFDSCLSLYHEMDEKGIEI---PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP 355
              D+ + ++      +K +E+    +    L      K G+  +  +  ++  +   + 
Sbjct: 132 DGADYTAAITFL----DKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASK--LKS 185

Query: 356 -NVAIYTALIDSYAKLGSMNEAINIFER-----------MKYEGVEPDEVTYGVIISGLC 403
            N   +  +   Y +LG    +++                 +                L 
Sbjct: 186 DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQDHKRCFAHYKQVKKLNKLIESAEELI 245

Query: 404 KNERLEEAMQYFEFCRA-----NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC 458
           ++ R  +A   +E         +           +     K  +  EA  +  E+++   
Sbjct: 246 RDGRYTDATSKYE--SVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME- 302

Query: 459 PRDSYCYNVLIDALAKCGKLDEALALFKR 487
           P +        +A       DEA+  ++ 
Sbjct: 303 PDNVNALKDRAEAYLIEEMYDEAIQDYEA 331

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} Length = 225

 Score = 45.3 bits (108), Expect = 2e-05
 Identities = 30/150 (20%), Positives = 48/150 (32%), Gaps = 31/150 (20%)

Query: 354 QPNVA-IYTALIDSYAKLGSMNEAINIFER---MKYEGVEPDEVT----YGVIISGLCKN 405
            P     +    + Y  L   ++A   F +   +K     PD       YG     LC  
Sbjct: 38  DPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-----PDSAEINNNYGWF---LCGR 89

Query: 406 -ERLEEAMQYFEFCRANGVAVNAMFYSSLIDG-------LGKAGRVDEAEELFEEMVEKG 457
             R  E+M YF+       A+    Y +             K G+   AE   +  +   
Sbjct: 90  LNRPAESMAYFD------KALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ 143

Query: 458 CPRDSYCYNVLIDALAKCGKLDEALALFKR 487
            P+    +  L       G+L +A   FK+
Sbjct: 144 -PQFPPAFKELARTKMLAGQLGDADYYFKK 172

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A Length = 450

 Score = 45.8 bits (109), Expect = 3e-05
 Identities = 44/356 (12%), Positives = 97/356 (27%), Gaps = 57/356 (16%)

Query: 255 YNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLE-GDFDSCLSLYHEM 313
           +  + K     G+   A+ +F    A +  PD           +L  G   + L      
Sbjct: 29  HLELGKKLLAAGQLADALSQFH--AAVDGDPDNYIAYYRRATVFLAMGKSKAALPDL--- 83

Query: 314 DEKGIEI-PSH--AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKL 370
             K I++      A       L K GK  E    F+ +++    P+            K 
Sbjct: 84  -TKVIQLKMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLK--SNPSENEEKEAQSQLIKS 140

Query: 371 GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFY 430
             M    +                          +     A+ + +      V  +A   
Sbjct: 141 DEMQRLRSQALN-------------------AFGSGDYTAAIAFLDKILEVCVW-DAELR 180

Query: 431 SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR--- 487
               +   K G   +A    +   +     ++  +  +     + G  + +L+  +    
Sbjct: 181 ELRAECFIKEGEPRKAISDLKAASKL-KNDNTEAFYKISTLYYQLGDHELSLSEVRECLK 239

Query: 488 --------MEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA-- 537
                          + +         + ++ R  +A   ++ ++     P+ A +    
Sbjct: 240 LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRS 297

Query: 538 -LSIGLCLS--GKVARACKILD---ELAPKGIIPETAFEDMITCLCKTGRIKEACK 587
              I  C S   K   A ++     ++ P  +    A +D            EA +
Sbjct: 298 KERICHCFSKDEKPVEAIRVCSEVLQMEPDNV---NALKDRAEAYLIEEMYDEAIQ 350

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.4 bits (105), Expect = 4e-05
 Identities = 17/154 (11%), Positives = 55/154 (35%), Gaps = 20/154 (12%)

Query: 343 AIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTY----GVI 398
             + + + +  + +  + T L  +Y K  + ++A   ++  +     P+ V        +
Sbjct: 40  MYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYK--ELLQKAPNNVDCLEACAEM 97

Query: 399 ISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG-----KAGRVDEAEELFEEM 453
                   + ++A++ +E  +   + + A   ++ I  LG      A +  +  E   + 
Sbjct: 98  ---QVCRGQEKDALRMYE--KI--LQLEADNLAANI-FLGNYYYLTAEQEKKKLETDYKK 149

Query: 454 VEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
           +     +  Y       +     + ++A    ++
Sbjct: 150 LSS-PTKMQYARYRDGLSKLFTTRYEKARNSLQK 182

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} Length = 208

 Score = 44.0 bits (104), Expect = 4e-05
 Identities = 19/101 (18%), Positives = 38/101 (37%), Gaps = 16/101 (15%)

Query: 402 LCKNERLEEAMQYF-----------EFCRANGVAVNAMFYSSLIDGLGKA----GRVDEA 446
             +  +  +A+ YF           E      V  N+   S L   L  A       D+A
Sbjct: 14  AIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKA 73

Query: 447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
              ++E+++K  P +  C     +     G+  +AL ++++
Sbjct: 74  YLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEK 113

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 44.6 bits (106), Expect = 6e-05
 Identities = 34/224 (15%), Positives = 55/224 (24%), Gaps = 42/224 (18%)

Query: 290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEI-PSHA---YNLVIGGLC--KVGKCIEGHA 343
            M    +     +       +    E   +  P       +L   GL   +  K      
Sbjct: 24  PMEEGLSMLKLANLAEAALAF----EAVCQAAPEREEAWRSL---GLTQAENEKDGLAII 76

Query: 344 IFESMIRRGCQPNVA-IYTALIDSYAKLGSMNEAINIFER--------------MKYEGV 388
                      P    ++ AL  S+    + N A+                        V
Sbjct: 77  ALNHARM--LDPKDIAVHAALAVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQADV 134

Query: 389 EPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA----GRVD 444
           + D++                E         A  + +N          LG         D
Sbjct: 135 DIDDLNVQSEDFFFAAPNEYRECRTLLH--AA--LEMNPNDAQLHA-SLGVLYNLSNNYD 189

Query: 445 EAEELFEEMVE-KGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
            A       VE +  P D+  +N L   LA   +  EAL  + R
Sbjct: 190 SAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNR 231

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A Length = 327

 Score = 41.9 bits (99), Expect = 5e-04
 Identities = 12/81 (14%), Positives = 23/81 (28%), Gaps = 2/81 (2%)

Query: 407 RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN 466
            + +    + F   N   +           + K   + EA   FE + +   P     + 
Sbjct: 2   HMLQNNTDYPFEANNP-YMYHENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWR 59

Query: 467 VLIDALAKCGKLDEALALFKR 487
            L    A+  K   A+     
Sbjct: 60  SLGLTQAENEKDGLAIIALNH 80

>3tax_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; thiocarbamate crosslink, covalent inhibitor, gylcosyltransfe inhibitor, O-GLCNAC transferase; HET: UDP; 1.88A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* Length = 723

 Score = 44.4 bits (104), Expect = 1e-04
 Identities = 29/127 (22%), Positives = 54/127 (42%), Gaps = 5/127 (3%)

Query: 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF 485
           +A   ++L +   + G ++EA  L+ + +E   P  +  ++ L   L + GKL EAL  +
Sbjct: 8   HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHY 66

Query: 486 KRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT-AASFRALSIGLCL 544
           K             Y+ + N + +    + AL+ +   I   I P  A +   L+     
Sbjct: 67  KEAIRI-SPTFADAYSNMGNTLKEMQDVQGALQCYTRAIQ--INPAFADAHSNLASIHKD 123

Query: 545 SGKVARA 551
           SG +  A
Sbjct: 124 SGNIPEA 130

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* Length = 568

 Score = 44.5 bits (105), Expect = 1e-04
 Identities = 21/125 (16%), Positives = 31/125 (24%), Gaps = 8/125 (6%)

Query: 440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYT 499
                         V    P+D   + +L DA    G         +R            
Sbjct: 2   TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPGH-PEA 59

Query: 500 YTILINGMFKEHRNEEALKLWDMMIDKGITPT-AASFRALSIGLCLSGKVARACKILD-- 556
              L    + + R+ EA  L     D    P        L   L  +G+   A       
Sbjct: 60  VARLGRVRWTQQRHAEAAVLLQQASD--AAPEHPGIALWLGHALEDAGQAEAAAAAYTRA 117

Query: 557 -ELAP 560
            +L P
Sbjct: 118 HQLLP 122

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.9 bits (96), Expect = 1e-04
 Identities = 16/85 (18%), Positives = 31/85 (36%), Gaps = 7/85 (8%)

Query: 407 RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA----GRVDEAEELFEEMVEKGCPRDS 462
              +A+ Y+E   A+G+          + GLG      G   +AE +    V++  P   
Sbjct: 5   LEAQAVPYYEKAIASGLQ-GKDLAECYL-GLGSTFRTLGEYRKAEAVLANGVKQF-PNHQ 61

Query: 463 YCYNVLIDALAKCGKLDEALALFKR 487
                    L   G+ ++ + L  +
Sbjct: 62  ALRVFYAMVLYNLGRYEQGVELLLK 86

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} Length = 117

 Score = 40.5 bits (95), Expect = 2e-04
 Identities = 11/52 (21%), Positives = 18/52 (34%), Gaps = 2/52 (3%)

Query: 438 GKAGRVDEAEELFEEMVEKGCPRDSY--CYNVLIDALAKCGKLDEALALFKR 487
           G  G   +A   +E+ +  G        CY  L       G+  +A A+   
Sbjct: 1   GVLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLAN 52

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A Length = 151

 Score = 40.9 bits (96), Expect = 2e-04
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 2/86 (2%)

Query: 402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD 461
                R+EEA  +F F        N  +   L        +  +A +L+          D
Sbjct: 46  FYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFAL-GKND 103

Query: 462 SYCYNVLIDALAKCGKLDEALALFKR 487
                       +     +A   F+ 
Sbjct: 104 YTPVFHTGQCQLRLKAPLKAKECFEL 129

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A Length = 100

 Score = 39.6 bits (93), Expect = 3e-04
 Identities = 14/62 (22%), Positives = 23/62 (37%), Gaps = 1/62 (1%)

Query: 426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF 485
           +     +L     K      A  LFEE+VE   P     Y  L     +  + D+A+  +
Sbjct: 6   DPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTY 64

Query: 486 KR 487
            +
Sbjct: 65  AQ 66

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 42.0 bits (98), Expect = 4e-04
 Identities = 24/163 (14%), Positives = 44/163 (26%), Gaps = 8/163 (4%)

Query: 380 FERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK 439
           +  + Y    P  +T G   +         +AM+  E     G      +  +++   G 
Sbjct: 91  YGDITYPVTSPLAITMGFA-ACEAAQGNYADAMEALEAAPVAGSEHLVAWMKAVV--YGA 147

Query: 440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLI-DALAKCGKLDEALALFKRMEDEGCDQTVY 498
           A R  +  +  +   +      +    V    A A      EA        D    +   
Sbjct: 148 AERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACA 207

Query: 499 TYTILINGMFKEH--RNEEALKLWDMMIDKGITPTAASFRALS 539
                   M +        A+ L + +      P  A   AL 
Sbjct: 208 RAIAWYLAMARRSQGNESAAVALLEWLQTTHPEPKVA--AALK 248

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} Length = 282

 Score = 40.9 bits (95), Expect = 7e-04
 Identities = 21/142 (14%), Positives = 42/142 (29%), Gaps = 11/142 (7%)

Query: 437 LGKAGRVDEAEELFEEMVEKGC-PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQ 495
               G   +A E  E     G     ++   V+        +  + +   K       D+
Sbjct: 112 EAAQGNYADAMEALEAAPVAGSEHLVAWMKAVV---YGAAERWTDVIDQVKSAGKWP-DK 167

Query: 496 TVYTYTILINGMFKEH--RNEEALKLWDMMIDKGITPTAASFRALSIGLCLS--GKVARA 551
            +     + +G+   +     EA +      D       A   A  + +     G  + A
Sbjct: 168 FLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAA 227

Query: 552 CKILDELAPKGIIPE--TAFED 571
             +L+ L      P+   A +D
Sbjct: 228 VALLEWLQTTHPEPKVAAALKD 249

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A Length = 142

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 12/87 (13%), Positives = 30/87 (34%), Gaps = 4/87 (4%)

Query: 402 LCKNERLEEAMQYFEF-CRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPR 460
             +  + ++A + F+  C  +    +A ++  L       G  ++A + +          
Sbjct: 28  QYQAGKWDDAQKIFQALCMLD--HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-IN 84

Query: 461 DSYCYNVLIDALAKCGKLDEALALFKR 487
           +        +   + G LD A + F  
Sbjct: 85  EPRFPFHAAECHLQLGDLDGAESGFYS 111

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 Length = 373

 Score = 41.1 bits (96), Expect = 8e-04
 Identities = 34/249 (13%), Positives = 61/249 (24%), Gaps = 34/249 (13%)

Query: 407 RLEEAMQYF----EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS 462
             +EA +      E           +  S L + L   G +  +  L ++  E+   +  
Sbjct: 29  NPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQ-TEQMARQHD 87

Query: 463 ------YCYNVLIDALAKCGKLDEA-------LALFKRMEDEGCDQTVYTYTILINGMFK 509
                 +      + L   G L  A         L      E      +   I    ++ 
Sbjct: 88  VWHYALWSLIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWA 147

Query: 510 EHRNEEALKL----WDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP 565
             R +EA        +++              L       G +  A   L+ L    +  
Sbjct: 148 WARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLE-NLLGN 206

Query: 566 ETAFEDMIT--------CLCKTGRIKEACKLADGIVDREREIPGKIRTALIN---ALRKA 614
                D I+            TG    A          E      ++    N   A    
Sbjct: 207 GKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQILL 266

Query: 615 GNADLAIKL 623
           G  + A  +
Sbjct: 267 GEFEPAEIV 275

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	650
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	100.0
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.97
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.96
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.95
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.93
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.92
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.92
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.91
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.9
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.9
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.89
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.88
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.88
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.87
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.87
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.86
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.86
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.85
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.85
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.85
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.84
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.84
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.83
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.81
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.8
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.8
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.8
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.78
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.77
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.77
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.77
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.77
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.77
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.77
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.76
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.75
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.75
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.74
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.73
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.73
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.72
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.72
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.71
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.71
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.7
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.68
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.67
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.67
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.67
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.66
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.66
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.66
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.65
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.65
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.64
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.63
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.62
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.62
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.61
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.61
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.6
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.6
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.59
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.58
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.57
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.56
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.56
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.55
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.54
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.53
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.53
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.52
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.49
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.48
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.45
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.42
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.42
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.41
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	99.4
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.39
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.39
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.39
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.37
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.37
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.36
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.36
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	99.34
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.33
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.33
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.33
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.32
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	99.32
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.32
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.31
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	99.3
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.3
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	99.29
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.26
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	99.25
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	99.24
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	99.24
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.23
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.22
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	99.22
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	99.22
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	99.2
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	99.2
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.19
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.19
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.18
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.17
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.13
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.12
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	99.12
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	99.11
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	99.1
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	99.09
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.09
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	99.08
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	99.08
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	99.05
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	99.04
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	99.04
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	99.03
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	99.03
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	99.03
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	99.03
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	99.02
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	99.01
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	99.0
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	99.0
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	99.0
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	99.0
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.99
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.97
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.97
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.96
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.96
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.95
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.95
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.94
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.94
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.91
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.91
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.91
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.9
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.9
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.9
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.9
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.88
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.88
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.87
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.87
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.86
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.85
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.84
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.84
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.84
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.83
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.83
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.81
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.79
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.77
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.75
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.74
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.72
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.71
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.71
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	98.7
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.69
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.69
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.69
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.68
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.65
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.64
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.62
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.62
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.6
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	98.59
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.57
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.54
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	98.54
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.5
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.5
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.45
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.44
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	98.44
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	98.38
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.37
2kat_A	115	Uncharacterized protein; NESG, structure, structur	98.31
2l6j_A	111	TPR repeat-containing protein associated with HSP;	98.23
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.22
1klx_A	138	Cysteine rich protein B; structural genomics, heli	98.21
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.19
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	98.15
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	98.13
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	98.09
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	98.04
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.93
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.88
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.82
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.81
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.71
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	97.65
1pc2_A	152	Mitochondria fission protein; unknown function; NM	97.65
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.65
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.61
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	97.6
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	97.57
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	97.55
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	97.5
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.48
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	97.46
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.35
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	97.3
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	97.21
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	97.15
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.09
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	97.05
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.96
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	96.94
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.84
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.49
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	96.29
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	96.25
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	96.13
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.04
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	95.96
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.9
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	95.76
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.79
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	94.75
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	94.48
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	94.43
3ffl_A	167	Anaphase-promoting complex subunit 7; tetratricope	94.34
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	94.17
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	93.56
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	93.44
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	93.36
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.26
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	93.08
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	91.01
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	90.17
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	90.01
3txn_A	394	26S proteasome regulatory complex subunit P42B; PC	88.72
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	88.61
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	87.27
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	86.57
3esl_A	202	Checkpoint serine/threonine-protein kinase BUB1; m	84.56
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	83.63
4a1g_A	152	Mitotic checkpoint serine/threonine-protein kinas;	83.53
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	82.85
2uwj_G	115	Type III export protein PSCG; virulence, chaperone	81.8
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	81.0
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	80.18

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=9.2e-42  Score=363.89  Aligned_cols=485  Identities=10%  Similarity=-0.005  Sum_probs=410.7

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLM  224 (650)
Q Consensus       145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll  224 (650)
                      ++...|..++..+.+.|++++|..+|+++...  .|+..++..++.+|.+.|++++|+.+|+++...  +++..+++.++
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~  157 (597)
T 2xpi_A           82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAA  157 (597)
T ss_dssp             CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHH
Confidence            45678889999999999999999999999864  457788889999999999999999999988653  56888999999


Q ss_pred             HHHHhcCChhHHHHHHHHHhcC---------------CCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHH
Q 045674          225 NGLVNSMFIESSELVFKVMENG---------------KVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKIT  289 (650)
Q Consensus       225 ~~~~~~~~~~~A~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  289 (650)
                      .+|.+.|++++|..+|+++...               +.+.+..+|+.++.+|.+.|++++|+++|+++.+.+. .+...
T Consensus       158 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~  236 (597)
T 2xpi_A          158 FCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDA-KCYEA  236 (597)
T ss_dssp             HHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred             HHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-hhhHH
Confidence            9999999999999999853221               2233588999999999999999999999999998642 25556


Q ss_pred             HHHHHHHHHhcCCHHHHH--HH-HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674          290 YMTLIQACYLEGDFDSCL--SL-YHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS  366 (650)
Q Consensus       290 ~~~l~~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (650)
                      +..+...+...+..+.+.  .+ +..+...+......+|+.++..|.+.|++++|.++|+++.+.  +++..+++.++.+
T Consensus       237 ~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  314 (597)
T 2xpi_A          237 FDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADT  314 (597)
T ss_dssp             HHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHH
T ss_pred             HHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHH
Confidence            666665544333222211  11 444444444444556777788999999999999999999876  5799999999999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          367 YAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA  446 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  446 (650)
                      |.+.|++++|+.+|+++.+.+.. +..++..++.++.+.|++++|..+++.+.+..+. +..++..++.+|.+.|++++|
T Consensus       315 ~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A  392 (597)
T 2xpi_A          315 LFVRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE-KAVTWLAVGIYYLCVNKISEA  392 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-SHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHhccHHHH
Confidence            99999999999999999876432 6778999999999999999999999999876554 788999999999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      .++|+++.+.. +.+..+|+.++.+|.+.|++++|+++|+++.+.++. +..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus       393 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  470 (597)
T 2xpi_A          393 RRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQG-THLPYLFLGMQHMQLGNILLANEYLQSSYAL  470 (597)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            99999999875 678899999999999999999999999999987543 7889999999999999999999999999987


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          527 GITPTAASFRALSIGLCLSGKVARACKILDELAPK------GIIP-ETAFEDMITCLCKTGRIKEACKLADGIVDREREI  599 (650)
Q Consensus       527 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  599 (650)
                      .+. +..++..++.+|.+.|++++|.++|+++.+.      .+.+ ..+|..++.+|.+.|++++|+++++++++.+ +.
T Consensus       471 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~  548 (597)
T 2xpi_A          471 FQY-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TN  548 (597)
T ss_dssp             CCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SC
T ss_pred             CCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CC
Confidence            544 7889999999999999999999999999876      2332 6899999999999999999999999999987 77


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          600 PGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       600 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      +..+|..++.+|.+.|++++|.+.++++++..+........+.
T Consensus       549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~  591 (597)
T 2xpi_A          549 DANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLK  591 (597)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence            8999999999999999999999999999999888655554443

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=3.9e-41  Score=359.08  Aligned_cols=487  Identities=10%  Similarity=-0.004  Sum_probs=417.5

Q ss_pred             HHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          112 NFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKS  191 (650)
Q Consensus       112 ~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  191 (650)
                      ..+..+++.+...|+++.|+.+|+.+...   .|+..++..++.+|.+.|++++|..+|+++...  +.+..+++.++.+
T Consensus        85 ~~~~~~~~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~  159 (597)
T 2xpi_A           85 DYLRLWRHDALMQQQYKCAAFVGEKVLDI---TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFC  159 (597)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCchHHHHHHHHHHhh---CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHH
Confidence            34455667777889999999999988753   346788899999999999999999999998654  6789999999999


Q ss_pred             HHcCCCHHHHHHHHHHHHHC---------------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHH
Q 045674          192 FGGLGMVEELLWVWRSMKEN---------------GIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYN  256 (650)
Q Consensus       192 ~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  256 (650)
                      |.+.|++++|+++|+++...               +...+..+|+.++.+|.+.|++++|..+|+++.+.+ +.+...+.
T Consensus       160 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~  238 (597)
T 2xpi_A          160 LVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFD  238 (597)
T ss_dssp             HHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHH
Confidence            99999999999999953221               123358899999999999999999999999998764 33566666


Q ss_pred             HHHHHHHHcCChhHHH--HH-HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          257 TMIKGYCKVGKTQKAM--EK-FRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLC  333 (650)
Q Consensus       257 ~l~~~~~~~g~~~~A~--~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  333 (650)
                      .++..+...+..+.+.  .+ +..+...+......+|+.++..|.+.|++++|.++|+++.+.  +++..++..++.+|.
T Consensus       239 ~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~  316 (597)
T 2xpi_A          239 QLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLF  316 (597)
T ss_dssp             HHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHH
T ss_pred             HHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHH
Confidence            6666554433322221  11 444544444445566777788899999999999999998876  468999999999999


Q ss_pred             hcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674          334 KVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ  413 (650)
Q Consensus       334 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  413 (650)
                      +.|++++|..+|+++.+.+.. +..++..++.+|.+.|++++|..+++++.+.. ..+..++..++..|.+.|++++|.+
T Consensus       317 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~  394 (597)
T 2xpi_A          317 VRSRFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARR  394 (597)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHH
Confidence            999999999999999987533 67789999999999999999999999998653 3468899999999999999999999


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          414 YFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC  493 (650)
Q Consensus       414 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  493 (650)
                      +|+++.+..+. +..+|..++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+..+
T Consensus       395 ~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  472 (597)
T 2xpi_A          395 YFSKSSTMDPQ-FGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQ  472 (597)
T ss_dssp             HHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence            99999887554 78899999999999999999999999999875 67889999999999999999999999999998755


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674          494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GITPT--AASFRALSIGLCLSGKVARACKILDELAPKGIIPET  567 (650)
Q Consensus       494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  567 (650)
                      . +..+|+.++.+|.+.|++++|.++|+++.+.    +..|+  ..++..++.+|.+.|++++|.++++++.+.++.+..
T Consensus       473 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~  551 (597)
T 2xpi_A          473 Y-DPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDAN  551 (597)
T ss_dssp             C-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHH
T ss_pred             C-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChH
Confidence            4 8899999999999999999999999999875    66777  789999999999999999999999999999898999


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      +|..++.+|...|++++|.++|+++++.+ |.+..++..++.+|.
T Consensus       552 ~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~  595 (597)
T 2xpi_A          552 VHTAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRALE  595 (597)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHh
Confidence            99999999999999999999999999987 778888888887653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=2e-30  Score=260.30  Aligned_cols=381  Identities=13%  Similarity=0.050  Sum_probs=252.9

Q ss_pred             HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS  305 (650)
Q Consensus       226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (650)
                      .+.+.|++++|...++.+.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..+..++.+.|++++
T Consensus         8 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~   85 (388)
T 1w3b_A            8 REYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHH
Confidence            3445555555555555554432 2234444555555555666666666665555442 3345556666666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          306 CLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY  385 (650)
Q Consensus       306 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  385 (650)
                      |...|+++.+.. +.+...+..++.++.+.|++++|...|+++++... .+...+..+...+...|++++|...|+++..
T Consensus        86 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           86 AIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            666666665543 22444566666666666666666666666665421 1344555566666666777777777776665


Q ss_pred             CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          386 EGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCY  465 (650)
Q Consensus       386 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~  465 (650)
                      .. .-+..+|..+...+...|++++|+..|+++.+.++. +...+..+...+...|++++|...++++.... |.+..++
T Consensus       164 ~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~  240 (388)
T 1w3b_A          164 TQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVVH  240 (388)
T ss_dssp             HC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHHH
T ss_pred             hC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cCCHHHH
Confidence            42 113556666777777777777777777777666544 56667777777777777777777777777764 5567777


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS  545 (650)
Q Consensus       466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  545 (650)
                      ..++.+|.+.|++++|+..|+++.+.++. +..+|..++.++...|++++|...++++++..+ .+..++..++..+...
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHc
Confidence            77777777788888888888777776443 566777777777778888888888888776543 3667777778888888


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      |++++|.+.++++.+..|.+..++..++.++.+.|++++|++.++++++.. |.+..++..++.++...|+
T Consensus       319 g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             CCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHccC
Confidence            888888888888887777777778888888888888888888888887765 5567777777777766553

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=100.00  E-value=1e-29  Score=255.12  Aligned_cols=380  Identities=16%  Similarity=0.065  Sum_probs=252.7

Q ss_pred             HHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHH
Q 045674          192 FGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKA  271 (650)
Q Consensus       192 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  271 (650)
                      +.+.|++++|++.++++.+.. +.+...+..+...+...|++++|...++...+.. +.+..+|..++..|.+.|++++|
T Consensus         9 ~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A   86 (388)
T 1w3b_A            9 EYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEA   86 (388)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHH
Confidence            334444444444444444331 1133333334444444445555544444444332 23444555555555555555555


Q ss_pred             HHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHc
Q 045674          272 MEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRR  351 (650)
Q Consensus       272 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  351 (650)
                      ++.|+++.+.. +.+..+|..++.++...|++++|.+.|+++.+... .+...+..+...+...|++++|.+.|+++++.
T Consensus        87 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  164 (388)
T 1w3b_A           87 IEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence            55555555432 12334455555555555555555555555555432 23444555556666666666666666666654


Q ss_pred             CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674          352 GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYS  431 (650)
Q Consensus       352 ~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  431 (650)
                      . +.+..+|..++..+...|++++|+..|+++...+. .+...+..+...+...|++++|+..++++....+. +..++.
T Consensus       165 ~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~  241 (388)
T 1w3b_A          165 Q-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHG  241 (388)
T ss_dssp             C-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHH
T ss_pred             C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHHH
Confidence            2 22456667777777777777777777777766432 14556777777778888888888888877776554 677778


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH  511 (650)
Q Consensus       432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  511 (650)
                      .++.++...|++++|++.|+++++.+ +.+..++..++.++.+.|++++|+..|+++.+..+ .+..++..++..+...|
T Consensus       242 ~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g  319 (388)
T 1w3b_A          242 NLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQG  319 (388)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHcC
Confidence            88888888888888888888888874 56777888888888888888888888888887743 47788888888888899


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      ++++|...++++.+..+. +..++..++.++.+.|++++|...++++.+..|....++..++.++...|+
T Consensus       320 ~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          320 NIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             CHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence            999999999988876433 677888889999999999999999999998888888888888888877664

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=9.1e-28  Score=250.83  Aligned_cols=449  Identities=12%  Similarity=-0.014  Sum_probs=274.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG  226 (650)
Q Consensus       147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (650)
                      ...+...+..+.+.|++++|+..|+++++.+  |+...+..++.+|...|++++|+..++++.+.+ +.+..++..+..+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            5677788888888888888888888888764  578888888888888888888888888888764 3366778888888


Q ss_pred             HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSC  306 (650)
Q Consensus       227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a  306 (650)
                      +...|++++|...|+++.+.+ +++......++..+........+.+.+..+...+..|+...+................
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            888888888888888887765 3445555555555555444444444444444333333332222211111111111111


Q ss_pred             HHHHHHHHHCCCC---------CCHHHHHHHHHHHHh---cCChHHHHHHHHHHHH-----cCC--------CcCHHHHH
Q 045674          307 LSLYHEMDEKGIE---------IPSHAYNLVIGGLCK---VGKCIEGHAIFESMIR-----RGC--------QPNVAIYT  361 (650)
Q Consensus       307 ~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~--------~~~~~~~~  361 (650)
                      ..+...+......         .+...+......+..   .|++++|..+|+++.+     ...        +.+...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence            2222111111111         113334444444443   6777777777777766     211        11244566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674          362 ALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG  441 (650)
Q Consensus       362 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  441 (650)
                      .++..+...|++++|..+|+++.+..  |+...+..+...+...|++++|...++.+....+. +...+..++.++...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhC
Confidence            66667777777777777777766653  33556666666777777777777777777665544 4556666777777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD  521 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  521 (650)
                      ++++|...++++.+.. +.+...+..++..|...|++++|...++++.+..+. +...+..++..+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            7777777777777654 445666677777777777777777777777665333 45566666777777777777777777


Q ss_pred             HHHHCCCC-CC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          522 MMIDKGIT-PT----AASFRALSIGLCL---SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       522 ~~~~~~~~-p~----~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      ++.+..+. ++    ...+..++.++..   .|++++|...++++.+..+.+..++..++.++...|++++|.+.+++++
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  476 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESA  476 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            76653222 11    2366666677777   7777777777777776666666677777777777777777777777777


Q ss_pred             HcCCCCCHHHHH
Q 045674          594 DREREIPGKIRT  605 (650)
Q Consensus       594 ~~~~~~~~~~~~  605 (650)
                      +.+ +.+...+.
T Consensus       477 ~~~-~~~~~~~~  487 (514)
T 2gw1_A          477 DLA-RTMEEKLQ  487 (514)
T ss_dssp             HHC-SSHHHHHH
T ss_pred             Hhc-cccHHHHH
Confidence            664 33444443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.97  E-value=2.4e-27  Score=247.59  Aligned_cols=448  Identities=10%  Similarity=-0.041  Sum_probs=328.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 045674          182 VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKG  261 (650)
Q Consensus       182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  261 (650)
                      ...+..++..+.+.|++++|+..|+++...+  |+...+..+..++...|++++|...++++.+.. +.+..++..++.+
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   82 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASA   82 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHH
Confidence            4456777888889999999999999998864  688889999999999999999999999988764 4467788899999


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHH
Q 045674          262 YCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEG  341 (650)
Q Consensus       262 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a  341 (650)
                      |.+.|++++|...|+++...+ +++......++..+........+.+.+..+...+..++...+................
T Consensus        83 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  161 (514)
T 2gw1_A           83 NEGLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSV  161 (514)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCH
T ss_pred             HHHHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchh
Confidence            999999999999999998875 3344455555555554444444444443332221111111111111111111111111


Q ss_pred             HHHHHHHHHcCC---------CcCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHH-----CCCC--------CCHHhHH
Q 045674          342 HAIFESMIRRGC---------QPNVAIYTALIDSYAK---LGSMNEAINIFERMKY-----EGVE--------PDEVTYG  396 (650)
Q Consensus       342 ~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~~~~~~A~~~~~~~~~-----~~~~--------p~~~~~~  396 (650)
                      ..+...+.....         +.+...+..++..+..   .|++++|+.+|+++..     ....        .+...+.
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  241 (514)
T 2gw1_A          162 TSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLE  241 (514)
T ss_dssp             HHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHH
Confidence            111111111111         1224555556665555   8899999999998877     3111        1345777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674          397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG  476 (650)
Q Consensus       397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  476 (650)
                      .+...+...|++++|...++.+.+..+.  ...+..++.++...|++++|...++++.... +.+...+..++.+|...|
T Consensus       242 ~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~  318 (514)
T 2gw1_A          242 HTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQ  318 (514)
T ss_dssp             HHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhC
Confidence            8888899999999999999998887655  7788888999999999999999999998874 667788889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILD  556 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~  556 (650)
                      ++++|...++++.+..+. +...+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|...++
T Consensus       319 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~  396 (514)
T 2gw1_A          319 NYDQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILTDKNDFDKALKQYD  396 (514)
T ss_dssp             CTTHHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence            999999999999887554 6678888888899999999999999999876443 56788888999999999999999999


Q ss_pred             HHhhCCCCcH------HHHHHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          557 ELAPKGIIPE------TAFEDMITCLCK---TGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       557 ~~~~~~~~~~------~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      ++.+..+.+.      .++..++.++..   .|++++|.+.++++++.. +.+..++..++.+|...|++++|...++++
T Consensus       397 ~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a  475 (514)
T 2gw1_A          397 LAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEES  475 (514)
T ss_dssp             HHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            9987666543      388899999999   999999999999999876 667888889999999999999999999999


Q ss_pred             HHCCCCChhhhh
Q 045674          628 IGVGYDRMGSIK  639 (650)
Q Consensus       628 ~~~~~~~~~~~~  639 (650)
                      ++..+.......
T Consensus       476 ~~~~~~~~~~~~  487 (514)
T 2gw1_A          476 ADLARTMEEKLQ  487 (514)
T ss_dssp             HHHCSSHHHHHH
T ss_pred             HHhccccHHHHH
Confidence            998887544433

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=1.9e-27  Score=241.73  Aligned_cols=204  Identities=16%  Similarity=0.149  Sum_probs=140.5

Q ss_pred             HHHHHHHHHHCCCCCCH-HHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---------hhH
Q 045674          166 VRLVFNELKEKGFLMTV-SAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF---------IES  235 (650)
Q Consensus       166 A~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~---------~~~  235 (650)
                      +..+..++.+++....+ ..++.+|.+|++.|++++|+++|++|.+.|+.||..+|+.||.+|.+.+.         ++.
T Consensus         9 ~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~   88 (501)
T 4g26_A            9 SENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR   88 (501)
T ss_dssp             ---------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred             HHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence            34444555555544443 34777788888888888888888888888888888888888888776554         456


Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE  315 (650)
Q Consensus       236 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  315 (650)
                      |.++|++|...|+.||..+|++||.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+
T Consensus        89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~  168 (501)
T 4g26_A           89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE  168 (501)
T ss_dssp             HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh
Q 045674          316 KGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK  369 (650)
Q Consensus       316 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  369 (650)
                      .|+.||..+|+.|+.+|++.|+.++|.++|++|.+.|..|+..+|+.++..|+.
T Consensus       169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            777777777777777777777777777777777777777777777777666654

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=99.96  E-value=2.8e-27  Score=240.47  Aligned_cols=202  Identities=18%  Similarity=0.226  Sum_probs=124.9

Q ss_pred             HHHHHHHHCCCCCCH-HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCC---------HHHHH
Q 045674          308 SLYHEMDEKGIEIPS-HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGS---------MNEAI  377 (650)
Q Consensus       308 ~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~A~  377 (650)
                      .+.+.+.+.+....+ ..++.++.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.+.         +++|.
T Consensus        11 ~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~   90 (501)
T 4g26_A           11 NLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF   90 (501)
T ss_dssp             -------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred             HHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence            333444444333222 23555556666666666666666666666666666666666665554432         56666


Q ss_pred             HHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          378 NIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG  457 (650)
Q Consensus       378 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  457 (650)
                      ++|++|...|+.||..+|+.++.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|
T Consensus        91 ~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G  170 (501)
T 4g26_A           91 DIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESE  170 (501)
T ss_dssp             HHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            67777766667777777777777777777777777777777766666777777777777777777777777777777777


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK  509 (650)
Q Consensus       458 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  509 (650)
                      +.||..+|+.|+.+|++.|++++|.++|++|.+.|..|+..||+.++..|..
T Consensus       171 ~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s  222 (501)
T 4g26_A          171 VVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS  222 (501)
T ss_dssp             CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred             CCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence            7777777777777777777777777777777776666777777766666653

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.96  E-value=2.1e-25  Score=234.29  Aligned_cols=437  Identities=12%  Similarity=0.004  Sum_probs=318.2

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG  226 (650)
Q Consensus       147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (650)
                      ...+..++..+.+.|++++|+..|+++++.. +.+...+..++.+|...|++++|++.|+++.+.+ +.+..++..+..+
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4566778888888899999999998888775 6678888888888888899999999998888864 3467788888888


Q ss_pred             HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCC------CCCCHHHHHHHHHHHHhc
Q 045674          227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARN------VQPDKITYMTLIQACYLE  300 (650)
Q Consensus       227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~  300 (650)
                      +...|++++|...|+ ....  .|+  .....+..+...+...+|...++.+....      ..|+.    ..+..+...
T Consensus       103 ~~~~g~~~~A~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~~  173 (537)
T 3fp2_A          103 NESLGNFTDAMFDLS-VLSL--NGD--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSN----TSLASFFGI  173 (537)
T ss_dssp             HHHHTCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCH----HHHHHHHHT
T ss_pred             HHHcCCHHHHHHHHH-HHhc--CCC--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchH----hHHHHHHHh
Confidence            888899999988886 3322  222  22223445555666678888888886531      12232    233444455


Q ss_pred             CCHHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHh--------cCChHHHHHHHHHHHHcCCCcC-------HHHHHHHH
Q 045674          301 GDFDSCLSLYHEMDEKGIEIP-SHAYNLVIGGLCK--------VGKCIEGHAIFESMIRRGCQPN-------VAIYTALI  364 (650)
Q Consensus       301 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~  364 (650)
                      .+.+.+...+......  .+. ......+...+..        .|++++|..+++.+++.... +       ..++..+.
T Consensus       174 ~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~g  250 (537)
T 3fp2_A          174 FDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENAALALCYTG  250 (537)
T ss_dssp             SCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHHHHHHHHHH
T ss_pred             cChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHHHHHHHHHH
Confidence            5555554443332221  111 1122233322222        24788888888888876322 2       23566677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 045674          365 DSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVD  444 (650)
Q Consensus       365 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  444 (650)
                      ..+...|++++|+..|+++...  .|+...+..+...+...|++++|...++.+.+..+. +..++..++..+...|+++
T Consensus       251 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  327 (537)
T 3fp2_A          251 IFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYK  327 (537)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHH
Confidence            7888899999999999998876  456778888888888999999999999998887655 7788888999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          445 EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMI  524 (650)
Q Consensus       445 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  524 (650)
                      +|...++++.+.. +.+...+..++.+|...|++++|...++++.+..+. +...+..++..+...|++++|...++++.
T Consensus       328 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  405 (537)
T 3fp2_A          328 NAKEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAK  405 (537)
T ss_dssp             HHHHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence            9999999998875 567788889999999999999999999999887544 67788888999999999999999999987


Q ss_pred             HCCC-----CCCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          525 DKGI-----TPTAASFRALSIGLCLS----------GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLA  589 (650)
Q Consensus       525 ~~~~-----~p~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  589 (650)
                      +..+     ......+...+.++...          |++++|..+++++.+..|.+..++..++.++...|++++|.+.|
T Consensus       406 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (537)
T 3fp2_A          406 RLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELF  485 (537)
T ss_dssp             HHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHH
Confidence            5321     11223355566777777          99999999999999888888899999999999999999999999


Q ss_pred             HHHHHcCCCCCHHH
Q 045674          590 DGIVDREREIPGKI  603 (650)
Q Consensus       590 ~~~~~~~~~~~~~~  603 (650)
                      +++++.. +.+...
T Consensus       486 ~~al~~~-~~~~~~  498 (537)
T 3fp2_A          486 EDSAILA-RTMDEK  498 (537)
T ss_dssp             HHHHHHC---CHHH
T ss_pred             HHHHHhC-CCcHHH
Confidence            9999876 444443

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.95  E-value=3.5e-26  Score=240.23  Aligned_cols=440  Identities=12%  Similarity=0.014  Sum_probs=337.4

Q ss_pred             HHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHH
Q 045674          182 VSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKG  261 (650)
Q Consensus       182 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  261 (650)
                      ...+..++..+.+.|++++|+..|+++.... +.+...+..+..++...|++++|...++++.+.. +.+..++..++..
T Consensus        25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~  102 (537)
T 3fp2_A           25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA  102 (537)
T ss_dssp             HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence            4567888889999999999999999999874 4478899999999999999999999999998765 4568889999999


Q ss_pred             HHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCChH
Q 045674          262 YCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIE--IPSHAYNLVIGGLCKVGKCI  339 (650)
Q Consensus       262 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~  339 (650)
                      +...|++++|...|+.+ ..  .|+.  ....+..+...+...+|...++.+......  .........+..+....+.+
T Consensus       103 ~~~~g~~~~A~~~~~~~-~~--~~~~--~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  177 (537)
T 3fp2_A          103 NESLGNFTDAMFDLSVL-SL--NGDF--DGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSH  177 (537)
T ss_dssp             HHHHTCHHHHHHHHHHH-C---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHH
T ss_pred             HHHcCCHHHHHHHHHHH-hc--CCCC--ChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChH
Confidence            99999999999999744 32  2222  122244555566678889999888654210  00111123334445555555


Q ss_pred             HHHHHHHHHHHcCCCcCHH-HHHHHHHHHH--------hcCCHHHHHHHHHHHHHCCCCCC--------HHhHHHHHHHH
Q 045674          340 EGHAIFESMIRRGCQPNVA-IYTALIDSYA--------KLGSMNEAINIFERMKYEGVEPD--------EVTYGVIISGL  402 (650)
Q Consensus       340 ~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~--------~~~~~~~A~~~~~~~~~~~~~p~--------~~~~~~l~~~~  402 (650)
                      .+...+......  .+... ....+...+.        ..|++++|+.+|+++.+.  .|+        ..++..+...+
T Consensus       178 ~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~~  253 (537)
T 3fp2_A          178 LEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGIFH  253 (537)
T ss_dssp             HHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHHHH
Confidence            555444332221  22211 2222322222        235899999999999875  333        23567777888


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674          403 CKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEAL  482 (650)
Q Consensus       403 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  482 (650)
                      ...|++++|...++.+.+..+.  ...+..++..+...|++++|...++++.+.. +.+..++..++.+|...|++++|+
T Consensus       254 ~~~~~~~~A~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~  330 (537)
T 3fp2_A          254 FLKNNLLDAQVLLQESINLHPT--PNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAK  330 (537)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCCC--HHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhcccHHHHHHHHHHHHhcCCC--chHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHH
Confidence            9999999999999999987554  7888889999999999999999999999985 678899999999999999999999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674          483 ALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG  562 (650)
Q Consensus       483 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  562 (650)
                      ..++++.+..+. +...+..++.++...|++++|..+++++.+..+. +...+..++.++...|++++|...++++.+..
T Consensus       331 ~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~  408 (537)
T 3fp2_A          331 EDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYDIAKRLE  408 (537)
T ss_dssp             HHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC
Confidence            999999987654 6778999999999999999999999999987544 67788899999999999999999999998754


Q ss_pred             CCc------HHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          563 IIP------ETAFEDMITCLCKT----------GRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       563 ~~~------~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      +.+      ...+..++.++...          |++++|+..++++++.. +.+..++..++.+|.+.|++++|++.+++
T Consensus       409 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (537)
T 3fp2_A          409 EVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFED  487 (537)
T ss_dssp             HHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence            432      23356667888888          99999999999999986 77889999999999999999999999999


Q ss_pred             HHHCCCCChhhh
Q 045674          627 KIGVGYDRMGSI  638 (650)
Q Consensus       627 ~~~~~~~~~~~~  638 (650)
                      +++..+......
T Consensus       488 al~~~~~~~~~~  499 (537)
T 3fp2_A          488 SAILARTMDEKL  499 (537)
T ss_dssp             HHHHC--CHHHH
T ss_pred             HHHhCCCcHHHH
Confidence            999988765543

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=1.2e-24  Score=223.04  Aligned_cols=366  Identities=14%  Similarity=0.070  Sum_probs=241.8

Q ss_pred             HHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          236 SELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE  315 (650)
Q Consensus       236 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~  315 (650)
                      +...+..+.... +.+...+..++..|.+.|++++|+.+|+++.+.. +.+..++..++.++...|++++|...|+++.+
T Consensus        11 ~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~   88 (450)
T 2y4t_A           11 VDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQ   88 (450)
T ss_dssp             -------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence            333444444332 3456667777777777777777777777776643 33566677777777777777777777777766


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          316 KGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV---AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE  392 (650)
Q Consensus       316 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~  392 (650)
                      .+. .+..++..++.+|.+.|++++|...|+++.+... .+.   ..+..++..+...                      
T Consensus        89 ~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~----------------------  144 (450)
T 2y4t_A           89 LKM-DFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNP-SENEEKEAQSQLIKSDEMQ----------------------  144 (450)
T ss_dssp             HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCC-CHHHHHHHHHHHHHHHHHH----------------------
T ss_pred             cCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CChhhHHHHHHHHHHHHHH----------------------
Confidence            542 2456666666777777777777777776665421 122   3444443331111                      


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL  472 (650)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (650)
                       .+..+...+...|++++|+..|+.+.+..+. +..++..++.+|...|++++|..+|+++.+.. +.+..++..++.+|
T Consensus       145 -~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~  221 (450)
T 2y4t_A          145 -RLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLY  221 (450)
T ss_dssp             -HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHH
T ss_pred             -HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence             1122233466677777777777777665443 66677777777777777777777777777653 55677777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTIL------------INGMFKEHRNEEALKLWDMMIDKGITPT----AASFR  536 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~  536 (650)
                      ...|++++|+..|+++.+..+. +...+..+            +..+...|++++|..+|+++++..+. +    ...+.
T Consensus       222 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~  299 (450)
T 2y4t_A          222 YQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKE  299 (450)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHH
Confidence            7777777777777777765433 44444444            67788888888888888888875332 2    34677


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH------
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA------  610 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~------  610 (650)
                      .++.++.+.|++++|..+++++.+..+.+..++..++.++...|++++|.+.++++++.. |.+..++..++.+      
T Consensus       300 ~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~  378 (450)
T 2y4t_A          300 RICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQ  378 (450)
T ss_dssp             HHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhc
Confidence            788888888888888888888888777788888888888888888888888888888775 5667777777733      


Q ss_pred             ------HHhcC-----CHHHHHHHHHH-HHHCCCC
Q 045674          611 ------LRKAG-----NADLAIKLMHS-KIGVGYD  633 (650)
Q Consensus       611 ------~~~~g-----~~~~A~~~~~~-~~~~~~~  633 (650)
                            |...|     +.+++++.|++ +++..|+
T Consensus       379 ~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd  413 (450)
T 2y4t_A          379 SQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD  413 (450)
T ss_dssp             HHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred             ccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence                  33344     56777888886 6666554

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.95  E-value=2.7e-24  Score=220.36  Aligned_cols=388  Identities=9%  Similarity=0.047  Sum_probs=287.0

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045674          199 EELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAM  278 (650)
Q Consensus       199 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  278 (650)
                      ..+...+.+..... +.+...+..+...+.+.|++++|..+|+++.+.. +.+..+|..++..|...|++++|+..|+++
T Consensus         9 ~~~~~~~~~~~~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a   86 (450)
T 2y4t_A            9 SGVDLGTENLYFQS-MADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKV   86 (450)
T ss_dssp             ---------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             cccccccccccccc-HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            34555566655542 4467889999999999999999999999998753 457889999999999999999999999999


Q ss_pred             HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCc
Q 045674          279 EARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS---HAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQP  355 (650)
Q Consensus       279 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  355 (650)
                      .+.+ +.+..++..++.++...|++++|...|+++.+.... +.   ..+..++..+.                      
T Consensus        87 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~----------------------  142 (450)
T 2y4t_A           87 IQLK-MDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDE----------------------  142 (450)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHH----------------------
T ss_pred             HhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHH----------------------
Confidence            9875 346889999999999999999999999999986432 33   45555544321                      


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLID  435 (650)
Q Consensus       356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  435 (650)
                       ...+..++..+...|++++|+.+|+++.+.. ..+...+..+..+|...|++++|+..|+.+.+..+. +..++..++.
T Consensus       143 -~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~  219 (450)
T 2y4t_A          143 -MQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKND-NTEAFYKIST  219 (450)
T ss_dssp             -HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHH
T ss_pred             -HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence             1123345666777888888888888877643 225667777888888888888888888887776544 6777888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHH
Q 045674          436 GLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL------------IDALAKCGKLDEALALFKRMEDEGCDQT----VYT  499 (650)
Q Consensus       436 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l------------~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~  499 (650)
                      +|...|++++|...|+++.... +.+...+..+            +..+.+.|++++|...|+++.+..+. +    ...
T Consensus       220 ~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~  297 (450)
T 2y4t_A          220 LYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRS  297 (450)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHH
Confidence            8888888888888888888764 4555555554            78888999999999999999886433 3    447


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH----
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC----  575 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~----  575 (650)
                      +..++.++.+.|++++|+..++++.+..+. +...+..++.+|...|++++|...++++++..|.+..++..++.+    
T Consensus       298 ~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  376 (450)
T 2y4t_A          298 KERICHCFSKDEKPVEAIRVCSEVLQMEPD-NVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLL  376 (450)
T ss_dssp             HHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHh
Confidence            788888899999999999999999876433 678899999999999999999999999999888888888888754    


Q ss_pred             --------HHHcC-----CHHHHHHHHHH-HHHcCCC---CCH-------HHHHHHHHHHHhcCCHHH
Q 045674          576 --------LCKTG-----RIKEACKLADG-IVDRERE---IPG-------KIRTALINALRKAGNADL  619 (650)
Q Consensus       576 --------~~~~g-----~~~~A~~~~~~-~~~~~~~---~~~-------~~~~~l~~~~~~~g~~~~  619 (650)
                              |...|     +.+++.+.|++ +++.. |   ++.       ..+..+..+|-..|+.++
T Consensus       377 ~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~-pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~~~  443 (450)
T 2y4t_A          377 KQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWH-PDNFQNEEEKKKAEKKFIDIAAAKEVLSDPEM  443 (450)
T ss_dssp             HHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSC-GGGCCSHHHHHHHHHHHHHHHHHHHHSSGGGG
T ss_pred             hcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhC-CCCCCCchHHHHHHHHHHHHHHHHHHhCCHHH
Confidence                    33334     56677888886 44432 1   111       244555566665555444

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=2.4e-22  Score=199.01  Aligned_cols=320  Identities=13%  Similarity=0.067  Sum_probs=188.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHH
Q 045674          286 DKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALID  365 (650)
Q Consensus       286 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  365 (650)
                      +...+..+...+...|++++|...|+++.+... .+..++..++..+...|++++|...++++++.. +.+...+..++.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            345677778888888888888888888877643 366778888888888888888888888887763 225667777888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674          366 SYAKLGSMNEAINIFERMKYEGVEP----DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG  441 (650)
Q Consensus       366 ~~~~~~~~~~A~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  441 (650)
                      ++...|++++|+..|+++.+.  .|    +...+..+...+.                       ...+..++..+...|
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~  134 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA  134 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred             HHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence            888888888888888888765  34    2223333311000                       001122334455555


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWD  521 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  521 (650)
                      ++++|...++++.+.. +.+...+..++.++...|++++|...++++.+..+. +..++..++..+...|++++|...++
T Consensus       135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~  212 (359)
T 3ieg_A          135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSD-NTEAFYKISTLYYQLGDHELSLSEVR  212 (359)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSC-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            5555555555555543 444555555555555555555555555555544322 44555555555555555555555555


Q ss_pred             HHHHCCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHHcCCHHHH
Q 045674          522 MMIDKGITPTAASFR------------ALSIGLCLSGKVARACKILDELAPKGIIPE----TAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       522 ~~~~~~~~p~~~~~~------------~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A  585 (650)
                      ++.+..+. +...+.            .++..+...|++++|...++++.+..+.+.    ..+..++.++...|++++|
T Consensus       213 ~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A  291 (359)
T 3ieg_A          213 ECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEA  291 (359)
T ss_dssp             HHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHH
Confidence            55543222 222221            224455566666666666666665555533    2244456666666666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      ++.++++++.. +.+..++..++.++...|++++|...++++++..+....
T Consensus       292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~  341 (359)
T 3ieg_A          292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQ  341 (359)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChH
Confidence            66666666654 445566666666666666666666666666666555433

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.93  E-value=9.5e-22  Score=194.70  Aligned_cols=334  Identities=14%  Similarity=0.071  Sum_probs=259.7

Q ss_pred             ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIG  330 (650)
Q Consensus       251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  330 (650)
                      ++..+..+...+...|++++|+..|+++.+.. +.+..++..+...+...|++++|...++++.+.. +.+...+..++.
T Consensus         2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~   79 (359)
T 3ieg_A            2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGH   79 (359)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHH
Confidence            45678889999999999999999999998864 3468899999999999999999999999999874 336788999999


Q ss_pred             HHHhcCChHHHHHHHHHHHHcCCC--cCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH
Q 045674          331 GLCKVGKCIEGHAIFESMIRRGCQ--PNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL  408 (650)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  408 (650)
                      .+...|++++|...|+.+.+....  .+...+..+...+.                       ...+..+...+...|++
T Consensus        80 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~~~  136 (359)
T 3ieg_A           80 LLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGADY  136 (359)
T ss_dssp             HHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTTCH
T ss_pred             HHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHccCH
Confidence            999999999999999999987320  13334433322211                       11233345566777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      ++|+..++.+.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++.+|...|++++|...++++
T Consensus       137 ~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a  214 (359)
T 3ieg_A          137 TAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVREC  214 (359)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            7777777777766544 66777777777888888888888888877764 667777778888888888888888888877


Q ss_pred             HHcCCCCCHHHHH------------HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHH
Q 045674          489 EDEGCDQTVYTYT------------ILINGMFKEHRNEEALKLWDMMIDKGITPTA----ASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       489 ~~~~~~~~~~~~~------------~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~  552 (650)
                      .+..+. +...+.            .++..+...|++++|...++++.+..+. +.    ..+..++.++...|++++|.
T Consensus       215 ~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~  292 (359)
T 3ieg_A          215 LKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAI  292 (359)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHH
Confidence            776433 333332            2366688899999999999999876444 33    23556788899999999999


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA  614 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (650)
                      ..++++.+..+.+..++..++.++...|++++|.+.++++++.. |.+..++..+..+....
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          293 RICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHH
Confidence            99999999888899999999999999999999999999999886 66777777777765543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.92  E-value=3.8e-20  Score=191.07  Aligned_cols=387  Identities=13%  Similarity=0.043  Sum_probs=245.7

Q ss_pred             CHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCH
Q 045674          216 SLYTYNFLMNGLVN----SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCK----VGKTQKAMEKFRAMEARNVQPDK  287 (650)
Q Consensus       216 ~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~  287 (650)
                      +...+..+...|..    .+++++|...|++..+.+   +...+..|...|..    .+++++|.+.|++..+.|   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            44444444444444    455555555555555432   34455555555555    555666666666555543   44


Q ss_pred             HHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHH
Q 045674          288 ITYMTLIQACYL----EGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCK----VGKCIEGHAIFESMIRRGCQPNVAI  359 (650)
Q Consensus       288 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~  359 (650)
                      ..+..|...|..    .+++++|...|++..+.+   +...+..+..+|..    .++.++|.+.|++..+.|   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            445555555555    556666666666655543   34555555555555    566677777777666653   4556


Q ss_pred             HHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674          360 YTALIDSYAK----LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYS  431 (650)
Q Consensus       360 ~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  431 (650)
                      +..|...|..    .+++++|+.+|++..+.+   +...+..+...|..    .+++++|..+|++..+.+   +...+.
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  259 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF  259 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            6666666666    677777777777776643   44556666666664    667777777777766654   445556


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          432 SLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC-----GKLDEALALFKRMEDEGCDQTVYTYTI  502 (650)
Q Consensus       432 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~~~~~~~~  502 (650)
                      .+..+|..    .++.++|+..|++..+.|   +...+..+...|...     +++++|+..|++..+.+   +...+..
T Consensus       260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  333 (490)
T 2xm6_A          260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN  333 (490)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence            66666666    677788888887777654   556667777777776     77888888888777763   4556666


Q ss_pred             HHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          503 LINGMFKEH---RNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       503 l~~~~~~~~---~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...|...|   ++++|++.|+++.+.+   +...+..++..|..    .+++++|.++|+++.+.+  ++.++..++.+
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~  408 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEI  408 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHH
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHH
Confidence            777776655   6778888888887753   56777777777777    778888888888887764  57777788888


Q ss_pred             HHH----cCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          576 LCK----TGRIKEACKLADGIVDRERE-I-PGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       576 ~~~----~g~~~~A~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      |..    .+++++|.+.|+++.+.+.. | +......++..+..  +.+.|.+..++..++.+.
T Consensus       409 y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~~~~~  470 (490)
T 2xm6_A          409 YYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIEKYAP  470 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHHHHCH
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHHHHHH
Confidence            877    78888888888888877521 1 44444455444332  345555555555554433

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.92  E-value=6.8e-20  Score=189.18  Aligned_cols=382  Identities=13%  Similarity=0.080  Sum_probs=249.8

Q ss_pred             CHHHHHHHHHHHHc----CCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHhcCCCCCCh
Q 045674          181 TVSAANSLIKSFGG----LGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN----SMFIESSELVFKVMENGKVGPDV  252 (650)
Q Consensus       181 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~A~~~~~~~~~~~~~~~~  252 (650)
                      +...+..+...|..    .+++++|+.+|++..+.|   +...+..|...|..    .+++++|...|++..+.+   +.
T Consensus        38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~  111 (490)
T 2xm6_A           38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP  111 (490)
T ss_dssp             CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred             CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence            44444444444444    455555555555554432   34444444444544    455555555555555432   34


Q ss_pred             hhHHHHHHHHHH----cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHH
Q 045674          253 VTYNTMIKGYCK----VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYL----EGDFDSCLSLYHEMDEKGIEIPSHA  324 (650)
Q Consensus       253 ~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~  324 (650)
                      ..+..|...|..    .+++++|+..|++..+.|   +...+..|...|..    .+++++|.+.|++..+.+   +...
T Consensus       112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a  185 (490)
T 2xm6_A          112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS  185 (490)
T ss_dssp             HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence            444555555555    455666666666655543   34455555555554    556666666666666553   4555


Q ss_pred             HHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 045674          325 YNLVIGGLCK----VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK----LGSMNEAINIFERMKYEGVEPDEVTYG  396 (650)
Q Consensus       325 ~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~  396 (650)
                      +..+...|..    .++.++|...|++..+.|   +...+..+...|..    .+++++|..+|++..+.+   +...+.
T Consensus       186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~  259 (490)
T 2xm6_A          186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQF  259 (490)
T ss_dssp             HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHH
T ss_pred             HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            6666666665    667777777777766654   44556666666665    677777777777776643   445556


Q ss_pred             HHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          397 VIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA-----GRVDEAEELFEEMVEKGCPRDSYCYNV  467 (650)
Q Consensus       397 ~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~A~~~~~~~~~~~~~~~~~~~~~  467 (650)
                      .+...|..    .++.++|+.+|++..+.+   +...+..+..+|...     +++++|...+++..+.+   +...+..
T Consensus       260 ~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~  333 (490)
T 2xm6_A          260 RLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQAN  333 (490)
T ss_dssp             HHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred             HHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHH
Confidence            66666666    778888888888777654   455666777777776     78888888888888864   5667788


Q ss_pred             HHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          468 LIDALAKCG---KLDEALALFKRMEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSI  540 (650)
Q Consensus       468 l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  540 (650)
                      +..+|...|   ++++|++.|++..+.+   +...+..|...|..    .+++++|...|+++.+.+   +...+..++.
T Consensus       334 lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~  407 (490)
T 2xm6_A          334 LGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGE  407 (490)
T ss_dssp             HHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHH
Confidence            888887766   7888888898888863   67788888888887    789999999999988864   5677888888


Q ss_pred             HHHh----cCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          541 GLCL----SGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       541 ~~~~----~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      .|..    .+++++|..+|+++.+.++.   +......++.++..  +.+.|.+..++..+
T Consensus       408 ~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~--~~~~a~~~a~~~~~  466 (490)
T 2xm6_A          408 IYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK--QLQQAELLSQQYIE  466 (490)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH--HHHHHHHHHHHHHH
T ss_pred             HHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh--HHHHHHHHHHHHHH
Confidence            8887    78999999999999988754   56666666655443  33444444444443

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.91  E-value=6.5e-20  Score=191.33  Aligned_cols=424  Identities=11%  Similarity=0.035  Sum_probs=271.2

Q ss_pred             CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          144 SHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFL  223 (650)
Q Consensus       144 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  223 (650)
                      |.+..+|..++. +.+.|++++|+.+|+++++.. |.+...|..++..+.+.|++++|..+|+++...  .|+...|..+
T Consensus        10 P~~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~   85 (530)
T 2ooe_A           10 PYDLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCY   85 (530)
T ss_dssp             TTCHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHH
T ss_pred             CCCHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHH
Confidence            456677777776 366777777777777777653 556677777777777777777777777777765  2466666555


Q ss_pred             HHHH-HhcCChhHHHH----HHHHHhc-CCCC-CChhhHHHHHHHHHH---------cCChhHHHHHHHHHHhCCCCCCH
Q 045674          224 MNGL-VNSMFIESSEL----VFKVMEN-GKVG-PDVVTYNTMIKGYCK---------VGKTQKAMEKFRAMEARNVQPDK  287 (650)
Q Consensus       224 l~~~-~~~~~~~~A~~----~~~~~~~-~~~~-~~~~~~~~l~~~~~~---------~g~~~~A~~~~~~~~~~~~~~~~  287 (650)
                      +... ...|+.+.|.+    +|++... .|.. .+...|...+....+         .|++++|..+|++.++.   |..
T Consensus        86 ~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~  162 (530)
T 2ooe_A           86 LSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMI  162 (530)
T ss_dssp             HHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCT
T ss_pred             HHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhh
Confidence            5432 33455555443    5555433 1222 234455555554433         34455555555554441   111


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 045674          288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSY  367 (650)
Q Consensus       288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (650)
                      .                                ....|..........|. ..+..++.                     
T Consensus       163 ~--------------------------------~~~~~~~~~~~e~~~~~-~~~~~~l~---------------------  188 (530)
T 2ooe_A          163 N--------------------------------IEQLWRDYNKYEEGINI-HLAKKMIE---------------------  188 (530)
T ss_dssp             T--------------------------------HHHHHHHHHHHHHHHCH-HHHHHHHH---------------------
T ss_pred             h--------------------------------HHHHHHHHHHHHHhhch-hHHHHHHH---------------------
Confidence            0                                00111111100000000 00000000                     


Q ss_pred             HhcCCHHHHHHHHHHH------HHCC---CCCC--------HHhHHHHHHHHHhc----CCH----HHHHHHHHHHHHCC
Q 045674          368 AKLGSMNEAINIFERM------KYEG---VEPD--------EVTYGVIISGLCKN----ERL----EEAMQYFEFCRANG  422 (650)
Q Consensus       368 ~~~~~~~~A~~~~~~~------~~~~---~~p~--------~~~~~~l~~~~~~~----g~~----~~a~~~~~~~~~~~  422 (650)
                      .+.+++..|..++.++      .+..   +.|+        ...|...+......    ++.    +.+..+|+++....
T Consensus       189 ~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~  268 (530)
T 2ooe_A          189 DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL  268 (530)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC
Confidence            0112233333333321      1110   1222        12333333222211    222    36777888887765


Q ss_pred             CCCCHHHHHHHHHHHHH-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          423 VAVNAMFYSSLIDGLGK-------AGRVD-------EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       423 ~~~~~~~~~~l~~~~~~-------~~~~~-------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      +. +...|..++..+.+       .|+++       +|..++++.++.-.|.+...|..++..+.+.|++++|..+|+++
T Consensus       269 p~-~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~a  347 (530)
T 2ooe_A          269 GH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRL  347 (530)
T ss_dssp             TT-CHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence            44 77888888887775       68876       89999999987324667899999999999999999999999999


Q ss_pred             HHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHhhCCCCcH
Q 045674          489 EDEGCDQT-VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG-LCLSGKVARACKILDELAPKGIIPE  566 (650)
Q Consensus       489 ~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~~~A~~~~~~~~~~~~~~~  566 (650)
                      ++..+. + ...|..++..+.+.|++++|..+|+++.+.... +...+...+.. +...|++++|..+|+++++..|.+.
T Consensus       348 l~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~  425 (530)
T 2ooe_A          348 LAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIP  425 (530)
T ss_dssp             HHSSSS-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCH
T ss_pred             hCcccc-CchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCH
Confidence            986432 3 357888888888999999999999999976332 34444443333 3368999999999999999988899


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIP----GKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      .+|..++..+.+.|+.++|..+|+++++.+ +.+    ...|...+......|+.+.+..+.+++++.-+
T Consensus       426 ~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~-~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p  494 (530)
T 2ooe_A          426 EYVLAYIDYLSHLNEDNNTRVLFERVLTSG-SLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFR  494 (530)
T ss_dssp             HHHHHHHHHHTTTTCHHHHHHHHHHHHHSC-CSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHhCCCHhhHHHHHHHHHhcc-CCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc
Confidence            999999999999999999999999999874 323    34888888888999999999999999998766

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.90  E-value=2.6e-21  Score=189.12  Aligned_cols=292  Identities=9%  Similarity=-0.056  Sum_probs=209.5

Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHH
Q 045674          321 PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIIS  400 (650)
Q Consensus       321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  400 (650)
                      +...+..++..+...|++++|..+|+++.+... .+...+..++..+...|++++|..+++++.+... .+...+..+..
T Consensus        21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~   98 (330)
T 3hym_B           21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVGC   98 (330)
T ss_dssp             CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHH
Confidence            444555666666666666666666666665522 2333444556666677777777777777665421 24556666666


Q ss_pred             HHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 045674          401 GLCKNE-RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD  479 (650)
Q Consensus       401 ~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (650)
                      .+...| ++++|...|+++.+..+. +...+..++.++...|++++|...++++.+.. +.+...+..++..|...|+++
T Consensus        99 ~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~  176 (330)
T 3hym_B           99 YYLMVGHKNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSK  176 (330)
T ss_dssp             HHHHSCSCHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhhhhHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHH
Confidence            777777 777777777777766544 55667777777888888888888888877764 455666777788888888888


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC--------CCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG--------ITPTAASFRALSIGLCLSGKVARA  551 (650)
Q Consensus       480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--------~~p~~~~~~~l~~~~~~~g~~~~A  551 (650)
                      +|...++++.+..+. +...+..++..+...|++++|...++++.+..        ......++..++.++...|++++|
T Consensus       177 ~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  255 (330)
T 3hym_B          177 LAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEA  255 (330)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHH
Confidence            888888888776543 67777788888888888888888888877531        123456788888888888999999


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-HhcCCHH
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL-RKAGNAD  618 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~  618 (650)
                      ...++++.+..+.+..++..++.++...|++++|.+.++++++.. +.+..++..++.++ ...|+.+
T Consensus       256 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g~~~  322 (330)
T 3hym_B          256 LDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIGDSE  322 (330)
T ss_dssp             HHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTTC--
T ss_pred             HHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhCchh
Confidence            999988888878888888888999999999999999999888775 66778888888877 4556544

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.90  E-value=3.8e-21  Score=187.95  Aligned_cols=283  Identities=11%  Similarity=-0.012  Sum_probs=246.3

Q ss_pred             CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          354 QPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL  433 (650)
Q Consensus       354 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l  433 (650)
                      ..+...+..++..+...|++++|+.+|+++.+... .+...+..++..+...|++++|...++++.+..+. +...+..+
T Consensus        19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l   96 (330)
T 3hym_B           19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV   96 (330)
T ss_dssp             -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence            33555667788899999999999999999987632 24556777888899999999999999999987665 67788899


Q ss_pred             HHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          434 IDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR  512 (650)
Q Consensus       434 ~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  512 (650)
                      +..+...| ++++|...|+++.+.. +.+...+..++.++...|++++|+..++++.+..+. +...+..++..+...|+
T Consensus        97 ~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~  174 (330)
T 3hym_B           97 GCYYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNN  174 (330)
T ss_dssp             HHHHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTC
T ss_pred             HHHHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhh
Confidence            99999999 9999999999999875 667889999999999999999999999999987554 56677789999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCcHHHHHHHHHHHHHcCCHH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKG---------IIPETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~~~~~~~l~~~~~~~g~~~  583 (650)
                      +++|...++++.+..+. +...+..++..+...|++++|..+++++.+..         +....++..++.++...|+++
T Consensus       175 ~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~  253 (330)
T 3hym_B          175 SKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA  253 (330)
T ss_dssp             HHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence            99999999999987554 78889999999999999999999999998753         335679999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          584 EACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       584 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      +|++.++++++.. +.+..++..++.++.+.|++++|.+.++++++..+........+.
T Consensus       254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~  311 (330)
T 3hym_B          254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLG  311 (330)
T ss_dssp             HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHH
Confidence            9999999999986 778899999999999999999999999999999887655554444

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.89  E-value=2.8e-21  Score=192.09  Aligned_cols=289  Identities=11%  Similarity=-0.001  Sum_probs=204.1

Q ss_pred             cCChHHHHH-HHHHHHHcCCC-c--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHH
Q 045674          335 VGKCIEGHA-IFESMIRRGCQ-P--NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEE  410 (650)
Q Consensus       335 ~g~~~~a~~-~~~~~~~~~~~-~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  410 (650)
                      .|++++|.. .+++....... |  +...+..++..+...|++++|+.+|+++.+.. ..+...+..+..++...|++++
T Consensus        38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  116 (368)
T 1fch_A           38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL  116 (368)
T ss_dssp             --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence            355555555 55544432111 1  22334456666666666666666666666542 1244556666666666666666


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH----------------HHHHHHHH
Q 045674          411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN----------------VLIDALAK  474 (650)
Q Consensus       411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~----------------~l~~~~~~  474 (650)
                      |+..|+++.+..+. +..++..++.++...|++++|...++++.... +.+...+.                .+...+ .
T Consensus       117 A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  193 (368)
T 1fch_A          117 AISALRRCLELKPD-NQTALMALAVSFTNESLQRQACEILRDWLRYT-PAYAHLVTPAEEGAGGAGLGPSKRILGSLL-S  193 (368)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-TTTGGGCC---------------CTTHHHH-H
T ss_pred             HHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHhhhhcccHHHHHHHHHh-h
Confidence            66666666655443 55566666666666666666666666666643 22222221                233344 8


Q ss_pred             cCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      .|++++|...++++.+..+.. +..++..++..+...|++++|+..++++++..+. +...+..++.++...|++++|..
T Consensus       194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  272 (368)
T 1fch_A          194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVA  272 (368)
T ss_dssp             HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHH
Confidence            899999999999998875432 5788999999999999999999999999986443 67889999999999999999999


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----------HHHHHHHHHHHHhcCCHHHHHH
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-----------GKIRTALINALRKAGNADLAIK  622 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~  622 (650)
                      .++++++..+.+..++..++.++...|++++|.+.++++++.. +.+           ..+|..++.+|...|++++|..
T Consensus       273 ~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  351 (368)
T 1fch_A          273 AYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA  351 (368)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence            9999999888889999999999999999999999999998874 333           6889999999999999999999


Q ss_pred             HHHHHHH
Q 045674          623 LMHSKIG  629 (650)
Q Consensus       623 ~~~~~~~  629 (650)
                      ++++.++
T Consensus       352 ~~~~~l~  358 (368)
T 1fch_A          352 ADARDLS  358 (368)
T ss_dssp             HHTTCHH
T ss_pred             hHHHHHH
Confidence            8886554

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.88  E-value=5.3e-18  Score=176.87  Aligned_cols=428  Identities=10%  Similarity=0.083  Sum_probs=286.0

Q ss_pred             CCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          108 KLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANS  187 (650)
Q Consensus       108 ~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  187 (650)
                      +.+.+.....++. ...|+.+.|..+|+.+...  +|.+...|...+..+.+.|++++|+.+|++++...  |+...|..
T Consensus        10 P~~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~   84 (530)
T 2ooe_A           10 PYDLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKC   84 (530)
T ss_dssp             TTCHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHH
T ss_pred             CCCHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHH
Confidence            3445555555554 4578999999999999876  67789999999999999999999999999999873  58888888


Q ss_pred             HHHHH-HcCCCHHHHHH----HHHHHHHC-CCCC-CHHHHHHHHHHHHh---------cCChhHHHHHHHHHhcCCCCCC
Q 045674          188 LIKSF-GGLGMVEELLW----VWRSMKEN-GIEP-SLYTYNFLMNGLVN---------SMFIESSELVFKVMENGKVGPD  251 (650)
Q Consensus       188 l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~~-~~~~~~~ll~~~~~---------~~~~~~A~~~~~~~~~~~~~~~  251 (650)
                      ++... ...|+.+.|.+    +|++.... |..+ +...|...+.....         .|+++.|..+|++.++.  +.+
T Consensus        85 ~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~--P~~  162 (530)
T 2ooe_A           85 YLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN--PMI  162 (530)
T ss_dssp             HHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS--CCT
T ss_pred             HHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc--hhh
Confidence            77543 45677766655    77776653 5443 56677777776654         68899999999999973  211


Q ss_pred             --hhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH------CC---CCC
Q 045674          252 --VVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDE------KG---IEI  320 (650)
Q Consensus       252 --~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~------~~---~~~  320 (650)
                        ...|..........|.                    .+...++.  ...++++.|..+++++..      ..   ++|
T Consensus       163 ~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p  220 (530)
T 2ooe_A          163 NIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP  220 (530)
T ss_dssp             THHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred             hHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence              1223222221111110                    11111111  123445666665554221      10   111


Q ss_pred             CHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh----cCCH----HHHHHHHHHHHHCCCCCCH
Q 045674          321 PSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK----LGSM----NEAINIFERMKYEGVEPDE  392 (650)
Q Consensus       321 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~----~~A~~~~~~~~~~~~~p~~  392 (650)
                      +..            ......               ...|...+.....    .++.    .++..+|+++.... .-+.
T Consensus       221 ~~~------------~~~~~~---------------~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~  272 (530)
T 2ooe_A          221 QNT------------PQEAQQ---------------VDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHP  272 (530)
T ss_dssp             C--------------CCHHHH---------------HHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCH
T ss_pred             CCC------------hhHHHH---------------HHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCH
Confidence            100            000000               1122222211111    1121    35666677666541 2245


Q ss_pred             HhHHHHHHHHHh-------cCCHH-------HHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          393 VTYGVIISGLCK-------NERLE-------EAMQYFEFCRA-NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG  457 (650)
Q Consensus       393 ~~~~~l~~~~~~-------~g~~~-------~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  457 (650)
                      ..|..++..+.+       .|+++       +|..+|++..+ ..+. +...|..++..+.+.|++++|..+|+++++..
T Consensus       273 ~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~-~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~  351 (530)
T 2ooe_A          273 DIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE  351 (530)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS
T ss_pred             HHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc
Confidence            666666666654       67766       88888888886 3333 67888888888889999999999999998863


Q ss_pred             CCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 045674          458 CPRDS-YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING-MFKEHRNEEALKLWDMMIDKGITPTAASF  535 (650)
Q Consensus       458 ~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~  535 (650)
                       +.+. ..|..++..+.+.|++++|.++|++..+.... +...|...+.. +...|++++|..+|+++++..+. +...+
T Consensus       352 -p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~-~~~~~  428 (530)
T 2ooe_A          352 -DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYV  428 (530)
T ss_dssp             -SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTT-CHHHH
T ss_pred             -ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCC-CHHHH
Confidence             3343 58888888888899999999999999886332 33333333222 33689999999999999876443 67888


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          536 RALSIGLCLSGKVARACKILDELAPKGIIPE----TAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ..++..+.+.|+.++|..+|++++..++.++    .+|...+......|+.+.+..+++++.+.-
T Consensus       429 ~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~  493 (530)
T 2ooe_A          429 LAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAF  493 (530)
T ss_dssp             HHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            8999999999999999999999998765543    488888888889999999999999998763

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.88  E-value=3.1e-17  Score=176.30  Aligned_cols=221  Identities=13%  Similarity=0.128  Sum_probs=98.1

Q ss_pred             hcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          229 NSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLS  308 (650)
Q Consensus       229 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~  308 (650)
                      ..+++++|.++.++..      +..+|..+..++...|++++|++.|.+.      -|...|..++..+.+.|++++|.+
T Consensus      1088 ~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIe 1155 (1630)
T 1xi4_A         1088 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 1155 (1630)
T ss_pred             HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHH
Confidence            3444445444444331      2344445555555555555555554332      133444445555555555555555


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          309 LYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV  388 (650)
Q Consensus       309 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~  388 (650)
                      .+...++...  +......++.+|.+.+++++...+.    +   .++...|..++..|...|++++|..+|..+     
T Consensus      1156 yL~mArk~~~--e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----- 1221 (1630)
T 1xi4_A         1156 YLQMARKKAR--ESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----- 1221 (1630)
T ss_pred             HHHHHHhhcc--cccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----
Confidence            5544443321  1112223444444444444322221    1   123333444445555555555555555443     


Q ss_pred             CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          389 EPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL  468 (650)
Q Consensus       389 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  468 (650)
                          ..|..+...+++.|++++|.+.+++.      .+..+|..+..+|...|++..|......+     ..++..+..+
T Consensus      1222 ----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeel 1286 (1630)
T 1xi4_A         1222 ----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEEL 1286 (1630)
T ss_pred             ----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHH
Confidence                14444555555555555555555443      13344444444455555544444433321     1233344444


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Q 045674          469 IDALAKCGKLDEALALFKRMED  490 (650)
Q Consensus       469 ~~~~~~~g~~~~A~~~~~~~~~  490 (650)
                      +..|.+.|.+++|+.+++..+.
T Consensus      1287 i~yYe~~G~feEAI~LlE~aL~ 1308 (1630)
T 1xi4_A         1287 INYYQDRGYFEELITMLEAALG 1308 (1630)
T ss_pred             HHHHHHcCCHHHHHHHHHHHhc
Confidence            5555555555555555544443

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.87  E-value=2.3e-20  Score=185.52  Aligned_cols=307  Identities=14%  Similarity=0.037  Sum_probs=197.4

Q ss_pred             HHHHcCChhHHHH-HHHHHHhCCC---CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          261 GYCKVGKTQKAME-KFRAMEARNV---QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVG  336 (650)
Q Consensus       261 ~~~~~g~~~~A~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  336 (650)
                      .+...|++++|.+ .+++......   ..+...+..+...+...|++++|...|+++.+.. +.+..++..++.++...|
T Consensus        34 ~~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g  112 (368)
T 1fch_A           34 AHPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENE  112 (368)
T ss_dssp             ------------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTT
T ss_pred             hhHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCc
Confidence            3444456666665 5554433211   1123445555666666666666666666666553 224555555666666666


Q ss_pred             ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHH
Q 045674          337 KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-TYGVIISGLCKNERLEEAMQYF  415 (650)
Q Consensus       337 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~  415 (650)
                      ++++|...|+++++.. +.+..++..++.+|...|++++|+..|+++....  |+.. .+..+...       ..     
T Consensus       113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~-------~~-----  177 (368)
T 1fch_A          113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEG-------AG-----  177 (368)
T ss_dssp             CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC-------------------
T ss_pred             CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHH-------hh-----
Confidence            6666666666665542 2245555555666666666666666666655542  2111 11100000       00     


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          416 EFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPR--DSYCYNVLIDALAKCGKLDEALALFKRMEDEGC  493 (650)
Q Consensus       416 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  493 (650)
                            ... ....+..+...+ ..|++++|...++++.+.. +.  +..++..++.+|.+.|++++|+..++++.+..+
T Consensus       178 ------~~~-~~~~~~~~~~~~-~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~  248 (368)
T 1fch_A          178 ------GAG-LGPSKRILGSLL-SDSLFLEVKELFLAAVRLD-PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP  248 (368)
T ss_dssp             ---------------CTTHHHH-HHHHHHHHHHHHHHHHHHS-TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred             ------hhc-ccHHHHHHHHHh-hcccHHHHHHHHHHHHHhC-cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc
Confidence                  000 001111233333 8889999999999999875 44  688899999999999999999999999988754


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--------
Q 045674          494 DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP--------  565 (650)
Q Consensus       494 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--------  565 (650)
                      . +..++..++.++...|++++|...++++++..+. +...+..++.++...|++++|...++++.+..+.+        
T Consensus       249 ~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  326 (368)
T 1fch_A          249 N-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGG  326 (368)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CC
T ss_pred             C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCcccccc
Confidence            3 6788999999999999999999999999886443 67888999999999999999999999998766654        


Q ss_pred             ---HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          566 ---ETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       566 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                         ..+|..++.++...|++++|..++++.++
T Consensus       327 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~  358 (368)
T 1fch_A          327 AMSENIWSTLRLALSMLGQSDAYGAADARDLS  358 (368)
T ss_dssp             CCCHHHHHHHHHHHHHHTCGGGHHHHHTTCHH
T ss_pred             chhhHHHHHHHHHHHHhCChHhHHHhHHHHHH
Confidence               78999999999999999999998876543

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.87  E-value=5e-19  Score=182.30  Aligned_cols=214  Identities=14%  Similarity=0.030  Sum_probs=128.0

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-----------
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK-----------  474 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----------  474 (650)
                      |++++|.+.+++.....+. +..++..++..|...|++++|...++++.+.. |.+..++..++.+|..           
T Consensus       227 ~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~y~~~~~~~~~~~~~  304 (472)
T 4g1t_A          227 EEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAYLHCQIGCCYRAKVFQVMNLREN  304 (472)
T ss_dssp             ---CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred             hHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence            3444555555554444333 44444455555555555555555555555442 3344444444444322           


Q ss_pred             --------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHH
Q 045674          475 --------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAA--SFRALSI-GLC  543 (650)
Q Consensus       475 --------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~--~~~~l~~-~~~  543 (650)
                              .+.++.|...+++..+..+. +..++..++..+...|++++|+..|+++++..+.+...  .+..++. .+.
T Consensus       305 ~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~  383 (472)
T 4g1t_A          305 GMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLY  383 (472)
T ss_dssp             ---CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHH
Confidence                    23467788888888776544 55667888999999999999999999999865443221  2333333 345


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  623 (650)
                      ..|++++|+..|+++++..+.+.....          ....+.+++++.++.+ |.+..+|..++.+|...|++++|++.
T Consensus       384 ~~~~~~~Ai~~y~kal~i~~~~~~~~~----------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~  452 (472)
T 4g1t_A          384 QMKCEDKAIHHFIEGVKINQKSREKEK----------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADED  452 (472)
T ss_dssp             TSSCHHHHHHHHHHHHHSCCCCHHHHH----------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-----
T ss_pred             HCCCHHHHHHHHHHHHhcCcccHHHHH----------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHH
Confidence            789999999999999998777543222          2345567778888776 77889999999999999999999999


Q ss_pred             HHHHHHCCCC
Q 045674          624 MHSKIGVGYD  633 (650)
Q Consensus       624 ~~~~~~~~~~  633 (650)
                      |+++++.|+.
T Consensus       453 y~kALe~~~~  462 (472)
T 4g1t_A          453 SERGLESGSL  462 (472)
T ss_dssp             ----------
T ss_pred             HHHHHhcCCC
Confidence            9999998876

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.86  E-value=1.3e-16  Score=171.49  Aligned_cols=411  Identities=11%  Similarity=0.066  Sum_probs=292.8

Q ss_pred             CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          145 HNLECYISLIDCLALCGDVDRVRLVFNELKEKG--FLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNF  222 (650)
Q Consensus       145 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  222 (650)
                      .+++--...+..|...|.+.+|+++++++.-.+  +..+....+.|+....+. +..+..++..++...    +   ..-
T Consensus       983 ~~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d---~~e 1054 (1630)
T 1xi4_A          983 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D---APD 1054 (1630)
T ss_pred             cCHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c---HHH
Confidence            355556678888888888889998888888432  113445566677666665 445555555555422    1   233


Q ss_pred             HHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCC
Q 045674          223 LMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGD  302 (650)
Q Consensus       223 ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  302 (650)
                      +...+...|.+++|..+|++..     ......+.++   ...+++++|.++.++..      +..+|..+..++...|+
T Consensus      1055 IA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A         1055 IANIAISNELFEEAFAIFRKFD-----VNTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred             HHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCC
Confidence            6667788899999999998853     1222233333   26688888888888652      46788889999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          303 FDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFER  382 (650)
Q Consensus       303 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~  382 (650)
                      +++|.+.|.+.      .+...|..++..+.+.|++++|.+++....+..  ++....+.++.+|++.+++++...+.  
T Consensus      1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI-- 1190 (1630)
T 1xi4_A         1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI-- 1190 (1630)
T ss_pred             HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH--
Confidence            99999988653      367788888999999999999999998877764  23333345888888888888544332  


Q ss_pred             HHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674          383 MKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS  462 (650)
Q Consensus       383 ~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~  462 (650)
                        .   .++...|..+...|...|++++|..+|..+         ..|..++..+.+.|++++|.+.+++.      .+.
T Consensus      1191 --~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~ 1250 (1630)
T 1xi4_A         1191 --N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NST 1250 (1630)
T ss_pred             --h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCH
Confidence              2   345566777888888999999999999874         36888889999999999999888875      456


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL  542 (650)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  542 (650)
                      .+|..+..+|...|++..|......+.     .+...+..++..|...|.+++|+.+++..+... .-....|..++..+
T Consensus      1251 ~aWkev~~acve~~Ef~LA~~cgl~Ii-----v~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLy 1324 (1630)
T 1xi4_A         1251 RTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILY 1324 (1630)
T ss_pred             HHHHHHHHHHhhhhHHHHHHHHHHhhh-----cCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHH
Confidence            788888888888888888887665432     256667788888889999999999998887654 22455666666666


Q ss_pred             Hh--cCCHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHcCCHHHHHHHH-------------HHHHHcCCCCCHH
Q 045674          543 CL--SGKVARACKILDELAPKGI-----IPETAFEDMITCLCKTGRIKEACKLA-------------DGIVDREREIPGK  602 (650)
Q Consensus       543 ~~--~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~~~-------------~~~~~~~~~~~~~  602 (650)
                      .+  -++..++.++|..-.+..+     .....|..++..|.+.|+++.|....             +..+.  ...+.+
T Consensus      1325 aKy~peklmEhlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~--kv~n~e 1402 (1630)
T 1xi4_A         1325 SKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIIT--KVANVE 1402 (1630)
T ss_pred             HhCCHHHHHHHHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhc--ccccHH
Confidence            54  4567777777776665433     25678888999999999999888332             22221  245677


Q ss_pred             HHHHHHHHHHhcC
Q 045674          603 IRTALINALRKAG  615 (650)
Q Consensus       603 ~~~~l~~~~~~~g  615 (650)
                      .|...+.-|...+
T Consensus      1403 lyykai~Fyl~~~ 1415 (1630)
T 1xi4_A         1403 LYYRAIQFYLEFK 1415 (1630)
T ss_pred             HHHHHHHHHHhhC
Confidence            7777777777544

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.86  E-value=5e-20  Score=182.78  Aligned_cols=263  Identities=13%  Similarity=0.020  Sum_probs=194.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLG  438 (650)
Q Consensus       359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  438 (650)
                      .+..++..+.+.|++++|+.+|+++.... ..+...+..+...+...|++++|+..|+++.+..+. +..++..++.+|.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~  144 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSYT  144 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHH
Confidence            35556666666666666666666666542 124556666666666666777777766666665443 5666667777777


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHH
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRD----------SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QTVYTYTILINGM  507 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~  507 (650)
                      ..|++++|...++++.+.. +.+          ...+..++..+...|++++|+..++++.+..+. .+..++..++..+
T Consensus       145 ~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQN-PKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-HHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhC-ccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHH
Confidence            7777777777777776642 111          223445578888899999999999999887543 2688899999999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674          508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      ...|++++|+..++++++..+. +..++..++.++...|++++|...++++++..|.+..++..++.++...|++++|++
T Consensus       224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~  302 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVS  302 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHH
Confidence            9999999999999999986544 788899999999999999999999999999888899999999999999999999999


Q ss_pred             HHHHHHHcCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          588 LADGIVDREREI------------PGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       588 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      .++++++.. +.            +..+|..++.++...|+.+.|....++
T Consensus       303 ~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          303 NFLTALSLQ-RKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHH-HCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHhC-cccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            999998764 11            367899999999999999988877665

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.85  E-value=1.5e-19  Score=176.25  Aligned_cols=262  Identities=12%  Similarity=-0.012  Sum_probs=178.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 045674          363 LIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR  442 (650)
Q Consensus       363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  442 (650)
                      ++..+...|++++|+.+|+++.+... .+...+..+...+...|++++|...++++.+..+. +..++..++..+...|+
T Consensus        27 ~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~  104 (327)
T 3cv0_A           27 EGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHN  104 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHHHHHcCC
Confidence            34444444444444444444443211 13334444444444444444444444444443322 34444445555555555


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHH--------------HH-HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          443 VDEAEELFEEMVEKGCPRDSYCYNVL--------------ID-ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGM  507 (650)
Q Consensus       443 ~~~A~~~~~~~~~~~~~~~~~~~~~l--------------~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  507 (650)
                      +++|...++++.+.. +.+...+..+              .. .+...|++++|...++++.+..+. +...+..++..+
T Consensus       105 ~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~  182 (327)
T 3cv0_A          105 ANAALASLRAWLLSQ-PQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHASLGVLY  182 (327)
T ss_dssp             HHHHHHHHHHHHHTS-TTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHH
Confidence            555555555554432 2222222221              22 366778899999999998887544 778888889999


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674          508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      ...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+..+.+..++..++.++...|++++|.+
T Consensus       183 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  261 (327)
T 3cv0_A          183 NLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQYDLAAK  261 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccHHHHHH
Confidence            9999999999999998876443 678888999999999999999999999999888888999999999999999999999


Q ss_pred             HHHHHHHcCCCC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          588 LADGIVDREREI------------PGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       588 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .++++++.. +.            +..++..++.++.+.|++++|...++++++.
T Consensus       262 ~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~  315 (327)
T 3cv0_A          262 QLVRAIYMQ-VGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNVEP  315 (327)
T ss_dssp             HHHHHHHHH-TTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCSHH
T ss_pred             HHHHHHHhC-CccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence            999998875 33            5778899999999999999999998866553

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.85  E-value=3.7e-18  Score=175.82  Aligned_cols=391  Identities=10%  Similarity=-0.052  Sum_probs=218.0

Q ss_pred             CHHHHHHHHHHHHcCCCHHHHHHHHHHHHHC--------CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcC-----C
Q 045674          181 TVSAANSLIKSFGGLGMVEELLWVWRSMKEN--------GIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENG-----K  247 (650)
Q Consensus       181 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~-----~  247 (650)
                      ....|+.|...+...|++++|++.|++..+.        .......+|+.+..+|...|++++|...+++..+.     +
T Consensus        50 ~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~  129 (472)
T 4g1t_A           50 KATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSS  129 (472)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhccc
Confidence            3456777777777788888888877766542        01223456666777777777777777777665431     0


Q ss_pred             -CC-CChhhHHHHHHHHHHc--CChhHHHHHHHHHHhCCCCCCHHHHHHHHHHH---HhcCCHHHHHHHHHHHHHCCCCC
Q 045674          248 -VG-PDVVTYNTMIKGYCKV--GKTQKAMEKFRAMEARNVQPDKITYMTLIQAC---YLEGDFDSCLSLYHEMDEKGIEI  320 (650)
Q Consensus       248 -~~-~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~---~~~~~~~~a~~~~~~~~~~~~~~  320 (650)
                       .. ....++..+..++...  +++++|++.|++..+.++ -+...+..+..++   ...++.++|++.+++..+.+. .
T Consensus       130 ~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p-~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p-~  207 (472)
T 4g1t_A          130 PYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKP-KNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP-D  207 (472)
T ss_dssp             SSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS-S
T ss_pred             ccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC-c
Confidence             01 1233444444444443  346677777776665431 1334444443332   234555666666666655432 2


Q ss_pred             CHHHHHHHHHHHHh----cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHH
Q 045674          321 PSHAYNLVIGGLCK----VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYG  396 (650)
Q Consensus       321 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~  396 (650)
                      +..++..+...+..    .|++++|.+++++..... +.+..++..++..|...|++++|+..++++.+.... +..++.
T Consensus       208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~  285 (472)
T 4g1t_A          208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHC  285 (472)
T ss_dssp             CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred             chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHH
Confidence            34444444433332    345566666666666542 224555666666666666666666666666654211 334444


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 045674          397 VIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG  476 (650)
Q Consensus       397 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  476 (650)
                      .+...|...+...         .....       ..........+.+++|...++...+.. +.+...+..++.+|...|
T Consensus       286 ~lg~~y~~~~~~~---------~~~~~-------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~  348 (472)
T 4g1t_A          286 QIGCCYRAKVFQV---------MNLRE-------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALAD  348 (472)
T ss_dssp             HHHHHHHHHHHHH---------HHC-------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHh---------hhHHH-------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhc
Confidence            4444432211100         00000       000001112234678888999888875 566778889999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          477 KLDEALALFKRMEDEGCDQTVY--TYTILIN-GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      ++++|+..|++.++..+.+...  .+..++. .....|++++|+..|+++++..+  +....         .+....+.+
T Consensus       349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~--~~~~~---------~~~~~~l~~  417 (472)
T 4g1t_A          349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQ--KSREK---------EKMKDKLQK  417 (472)
T ss_dssp             CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCC--CCHHH---------HHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCc--ccHHH---------HHHHHHHHH
Confidence            9999999999999875443221  2233332 23578999999999999998643  32221         223455677


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR  604 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  604 (650)
                      ++++.++.+|.+..++..++.++...|++++|++.|+++++.+ +.++.+.
T Consensus       418 ~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~-~~~p~a~  467 (472)
T 4g1t_A          418 IAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG-SLIPSAS  467 (472)
T ss_dssp             HHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------------
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCCcHh
Confidence            7888888889899999999999999999999999999999876 4444433

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.85  E-value=6.5e-19  Score=167.31  Aligned_cols=277  Identities=14%  Similarity=0.108  Sum_probs=180.5

Q ss_pred             HHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHH
Q 045674          330 GGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLE  409 (650)
Q Consensus       330 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  409 (650)
                      +-....|++..|+..++................+.++|...|+++.|+..++..    -.|+..++..+...+...|+.+
T Consensus         7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~   82 (291)
T 3mkr_A            7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD   82 (291)
T ss_dssp             HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred             HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence            445567777777777766544321111234455677777788887777655431    2445666777777777777778


Q ss_pred             HHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          410 EAMQYFEFCRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM  488 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  488 (650)
                      +|++.++++...+..| +...+..++.++...|++++|++.+++      +.+...+..++.+|.+.|++++|.+.|+++
T Consensus        83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~  156 (291)
T 3mkr_A           83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKELKKM  156 (291)
T ss_dssp             HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            8888877777664322 555666667777777888888777766      456777777777777778888888877777


Q ss_pred             HHcCCCCCHHHH---HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 045674          489 EDEGCDQTVYTY---TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP  565 (650)
Q Consensus       489 ~~~~~~~~~~~~---~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  565 (650)
                      .+..  |+....   ..++..+...|++++|..+|+++++..+ .+...++.++.++.+.|++++|...++++++..|.+
T Consensus       157 ~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~  233 (291)
T 3mkr_A          157 QDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH  233 (291)
T ss_dssp             HHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence            7764  232111   1122233344777777777777776633 366777777777777777888887777777777777


Q ss_pred             HHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674          566 ETAFEDMITCLCKTGRIKE-ACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLM  624 (650)
Q Consensus       566 ~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  624 (650)
                      +.++..++.++...|+.++ +.++++++++.+ |.++.+.    +...+.+.++++..-|
T Consensus       234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~-P~~~~~~----d~~~~~~~fd~~~~~~  288 (291)
T 3mkr_A          234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAH-RSHPFIK----EYRAKENDFDRLVLQY  288 (291)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHH----HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC-CCChHHH----HHHHHHHHHHHHHHHc
Confidence            7777777777777777755 467777777765 4444332    2344555555555433

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.84  E-value=8.6e-20  Score=181.07  Aligned_cols=265  Identities=11%  Similarity=-0.007  Sum_probs=186.5

Q ss_pred             HHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHH
Q 045674          324 AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLC  403 (650)
Q Consensus       324 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  403 (650)
                      .+..++..+.+.|++++|..+|+++++.. +.+...+..++.+|...|++++|+..|+++.... ..+..++..+...|.
T Consensus        67 ~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~  144 (365)
T 4eqf_A           67 GAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVSYT  144 (365)
T ss_dssp             THHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence            35555555566666666666666665542 2245555666666666666666666666665542 113555666666666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCC---------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHH
Q 045674          404 KNERLEEAMQYFEFCRANGVA---------VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPR--DSYCYNVLIDAL  472 (650)
Q Consensus       404 ~~g~~~~a~~~~~~~~~~~~~---------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~  472 (650)
                      ..|++++|+..++++.+..+.         .....+..++..+...|++++|...++++++.. +.  +..++..++.+|
T Consensus       145 ~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~~~~  223 (365)
T 4eqf_A          145 NTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLGVLF  223 (365)
T ss_dssp             HTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHHHHH
Confidence            666666666666665553221         012334456778888999999999999999875 44  688899999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ...|++++|+..|+++.+..+. +..+|..++.+|...|++++|+..++++++..+. +..++..++.+|...|++++|.
T Consensus       224 ~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~  301 (365)
T 4eqf_A          224 HLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINLGAYREAV  301 (365)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHCCCHHHHH
Confidence            9999999999999999887544 7888999999999999999999999999886544 6788899999999999999999


Q ss_pred             HHHHHHhhCCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          553 KILDELAPKGII------------PETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       553 ~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      ..++++++..+.            +..+|..++.++...|+.+.|.++.++.+
T Consensus       302 ~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~l  354 (365)
T 4eqf_A          302 SNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLGDL  354 (365)
T ss_dssp             HHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTTCC
T ss_pred             HHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHhhH
Confidence            999999876543            36789999999999999999988877643

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.84  E-value=1.9e-18  Score=164.12  Aligned_cols=259  Identities=14%  Similarity=0.085  Sum_probs=187.8

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCH--HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674          364 IDSYAKLGSMNEAINIFERMKYEGVEPDE--VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG  441 (650)
Q Consensus       364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  441 (650)
                      ++-....|++..|+..++++...  .|+.  .....+.++|...|++++|+..++.   . -.++..++..++..+...+
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~-~~~~~~a~~~la~~~~~~~   79 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---S-SAPELQAVRMFAEYLASHS   79 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---T-SCHHHHHHHHHHHHHHCST
T ss_pred             HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---c-CChhHHHHHHHHHHHcCCC
Confidence            34455678888888887776543  3332  3445567788888888888876643   1 2346667777778888888


Q ss_pred             CHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674          442 RVDEAEELFEEMVEKG-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLW  520 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  520 (650)
                      +.++|++.+++++..+ .|.+...+..++.+|.+.|++++|++.+++      ..+...+..++..+.+.|++++|.+.+
T Consensus        80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l  153 (291)
T 3mkr_A           80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL  153 (291)
T ss_dssp             THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            8888888888887765 355677777778888888888888888876      346777888888888888888888888


Q ss_pred             HHHHHCCCCCCHH-HH--HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 045674          521 DMMIDKGITPTAA-SF--RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER  597 (650)
Q Consensus       521 ~~~~~~~~~p~~~-~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  597 (650)
                      +++.+..  |+.. ..  ..++..+...|++++|..+|+++.+..|.+..+++.++.++...|++++|++.++++++.+ 
T Consensus       154 ~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-  230 (291)
T 3mkr_A          154 KKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-  230 (291)
T ss_dssp             HHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred             HHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence            8888754  3322 11  1122333345788888888888888777788888888888888888888888888888876 


Q ss_pred             CCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHHCCCCChhh
Q 045674          598 EIPGKIRTALINALRKAGNADL-AIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       598 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~~~~~~  637 (650)
                      |.++.++..++.++...|+.++ +.++++++++..|.....
T Consensus       231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~  271 (291)
T 3mkr_A          231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFI  271 (291)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHH
Confidence            6678888888888888888765 567888888887775443

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.83  E-value=1e-18  Score=170.35  Aligned_cols=279  Identities=13%  Similarity=0.007  Sum_probs=192.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHH
Q 045674          288 ITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSY  367 (650)
Q Consensus       288 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~  367 (650)
                      ..+..+...+...|++++|..+++++.+... .+...+..++..+...|++++|...++++.+.. +.+...+..++..|
T Consensus        22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~   99 (327)
T 3cv0_A           22 ENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH   99 (327)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence            3445555666666666666666666665432 245555556666666666666666666665542 22445555556666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHHcCCHHH
Q 045674          368 AKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSL-ID-GLGKAGRVDE  445 (650)
Q Consensus       368 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-~~-~~~~~~~~~~  445 (650)
                      ...|++++|+..++++...... +...+..+...+                      ++......+ .. .+...|++++
T Consensus       100 ~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~~  156 (327)
T 3cv0_A          100 TNEHNANAALASLRAWLLSQPQ-YEQLGSVNLQAD----------------------VDIDDLNVQSEDFFFAAPNEYRE  156 (327)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTT-TTTC------------------------------------------CCTTSHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHH----------------------HHHHHHHHHHHhHHHHHcccHHH
Confidence            6666666666666665544211 111111110000                      000011112 22 3667788999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      |...++++.+.. +.+...+..++..|...|++++|...++++.+..+. +..++..++..+...|++++|...++++.+
T Consensus       157 A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~  234 (327)
T 3cv0_A          157 CRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALD  234 (327)
T ss_dssp             HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999999988875 667888999999999999999999999999887543 678888999999999999999999999987


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII------------PETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      ..+. +...+..++.++...|++++|.+.++++.+..+.            ...++..++.++...|++++|..++++++
T Consensus       235 ~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          235 INPG-YVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             cCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            6543 6788889999999999999999999999887777            67889999999999999999999988665


Q ss_pred             H
Q 045674          594 D  594 (650)
Q Consensus       594 ~  594 (650)
                      +
T Consensus       314 ~  314 (327)
T 3cv0_A          314 E  314 (327)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.81  E-value=4.5e-18  Score=164.20  Aligned_cols=380  Identities=13%  Similarity=0.078  Sum_probs=154.0

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHH
Q 045674          158 ALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSE  237 (650)
Q Consensus       158 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~  237 (650)
                      -+.|++++|.++++++.      +..+|..|+.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|+
T Consensus        14 ~~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            35566777777777772      2347777777777777777777777542      35557777777777777777777


Q ss_pred             HHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          238 LVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKG  317 (650)
Q Consensus       238 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  317 (650)
                      ..++...+.  .+++.+.+.++.+|.+.|+++++.++++       .|+..+|..++..|...|++++|...|..+    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            766666653  3456667777777777777777776663       255567777777777888888888777765    


Q ss_pred             CCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHH
Q 045674          318 IEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGV  397 (650)
Q Consensus       318 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  397 (650)
                           ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.     ..+.....
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~  212 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEE  212 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHH
Confidence                 35777778888888888888877777      166777778888888888888855444322     23333445


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHcCCCC------CHHHHHHHH
Q 045674          398 IISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA--GRVDEAEELFEEMVEKGCPR------DSYCYNVLI  469 (650)
Q Consensus       398 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~~------~~~~~~~l~  469 (650)
                      ++..|.+.|++++|+.+++...... .-....|+.+..+|++-  +++.+.++.|..-+  ++++      +...|..+.
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~i--ni~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTS--CHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--cCcHHHHHHHHHHHHHHHH
Confidence            7777778888888888887777655 33566666666666654  23333333333111  1122      344577777


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcC-----------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          470 DALAKCGKLDEALALFKRMEDEG-----------CDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL  538 (650)
Q Consensus       470 ~~~~~~g~~~~A~~~~~~~~~~~-----------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  538 (650)
                      ..|...++++.|...+-+-....           -..+...|-..+.-|.  +....++.-+-..+...+  |.   ...
T Consensus       290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~l--d~---~r~  362 (449)
T 1b89_A          290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPRL--DH---TRA  362 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGGC--CH---HHH
T ss_pred             HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhcc--Cc---HHH
Confidence            78888888887765332211100           0123444444444444  111122222222221112  21   223


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLAD  590 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  590 (650)
                      +..+.+.|+..-...++..+.+.+  ...+=.++-..|...++++.-++-++
T Consensus       363 v~~~~~~~~l~l~~~yl~~v~~~n--~~~vnealn~l~ieeed~~~lr~si~  412 (449)
T 1b89_A          363 VNYFSKVKQLPLVKPYLRSVQNHN--NKSVNESLNNLFITEEDYQALRTSID  412 (449)
T ss_dssp             HHHHHHTTCTTTTHHHHHHHHTTC--CHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHhh--HHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence            344556666666667776666442  44455556667777777776555444

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.80  E-value=1.2e-19  Score=175.15  Aligned_cols=354  Identities=13%  Similarity=0.064  Sum_probs=159.2

Q ss_pred             HhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          228 VNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCL  307 (650)
Q Consensus       228 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~  307 (650)
                      .+.|++++|.+.++++      ++..+|..|+.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|.
T Consensus        14 ~~~~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi   81 (449)
T 1b89_A           14 EHIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELV   81 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHH
Confidence            3567788888888876      23458889999999999999999888653      46678888888888899999999


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          308 SLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEG  387 (650)
Q Consensus       308 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  387 (650)
                      ..++..++.  .+++.+.+.++.+|.+.|++.++.++++       .|+..+|..++..|...|.+++|..+|..+    
T Consensus        82 ~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a----  148 (449)
T 1b89_A           82 KYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----  148 (449)
T ss_dssp             -----------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT----
T ss_pred             HHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh----
Confidence            977766664  3356778888889999999888887774       356678888899999999999999998876    


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          388 VEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNV  467 (650)
Q Consensus       388 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~  467 (650)
                           ..|..++.++.+.|++++|.+.+.++      .+..+|..++.+|...|+++.|......+     ..++.-...
T Consensus       149 -----~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L-----~~~ad~l~~  212 (449)
T 1b89_A          149 -----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEE  212 (449)
T ss_dssp             -----TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTT-----TTCHHHHHH
T ss_pred             -----hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHH-----HhCHhhHHH
Confidence                 36888888899999999999888887      27788888889999999998886554432     234444557


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHH
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE--HRNEEALKLWDMMIDKGITP------TAASFRALS  539 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~~~p------~~~~~~~l~  539 (650)
                      ++..|.+.|++++|..+++..+... +-....|+.|...|++-  ++..+.++.|..  +.+++|      +...|..+.
T Consensus       213 lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~  289 (449)
T 1b89_A          213 LINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELV  289 (449)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHH
Confidence            8888888899999999888888765 44677777777776643  333444444332  122222      334567777


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhC------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          540 IGLCLSGKVARACKILDELAPK------------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      ..|...++++.|...+-+-...            .+.+.++|...+..|.  +...+++.-+...+...  .|.   ...
T Consensus       290 ~ly~~~~e~d~A~~tm~~h~~~a~~~~~f~~~~~kv~n~elyYkai~fyl--~~~p~~l~~ll~~l~~~--ld~---~r~  362 (449)
T 1b89_A          290 FLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAIQFYL--EFKPLLLNDLLMVLSPR--LDH---TRA  362 (449)
T ss_dssp             HHHHHTTCHHHHHHHHHHSTTTTCCHHHHHHHHHHCSSTHHHHHHHHHHH--HHCGGGHHHHHHHHGGG--CCH---HHH
T ss_pred             HHHHhhchHHHHHHHHHhCChhhhhhHHHHHHHhchhHHHHHHHHHHHHH--hcCHHHHHHHHHHHHhc--cCc---HHH
Confidence            7788888888887644333221            2334555666665555  22233333333333211  121   234


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          608 INALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       608 ~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      +..+.+.|+..-+..+++.+.+.+.
T Consensus       363 v~~~~~~~~l~l~~~yl~~v~~~n~  387 (449)
T 1b89_A          363 VNYFSKVKQLPLVKPYLRSVQNHNN  387 (449)
T ss_dssp             HHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred             HHHHHHcCCcHHHHHHHHHHHHhhH
Confidence            5556777777777777777776544

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.80  E-value=9.4e-18  Score=152.18  Aligned_cols=198  Identities=19%  Similarity=0.098  Sum_probs=143.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      +...+..+...+...|++++|+..|+++++.. |.+...+..++.++.+.|++++|+..+++.++..+. +...+..++.
T Consensus         4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~   81 (217)
T 2pl2_A            4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVARTPR-YLGGYMVLSE   81 (217)
T ss_dssp             CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHH
Confidence            44556667777777777777777777777764 566777777777777777777777777777776543 6667777777


Q ss_pred             HHHhc-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674          506 GMFKE-----------HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT  574 (650)
Q Consensus       506 ~~~~~-----------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  574 (650)
                      ++...           |++++|+..++++++..+. +...+..++.++...|++++|+..|+++++.+ .+..++..++.
T Consensus        82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~la~  159 (217)
T 2pl2_A           82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRSALAE  159 (217)
T ss_dssp             HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHH
T ss_pred             HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHHHHHH
Confidence            77777           8888888888888876554 67778888888888888888888888888877 78888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          575 CLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       575 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                      ++...|++++|+..|+++++.. |.+..++..++.++...|++++|+..+++..
T Consensus       160 ~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          160 LYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            8888888888888888888876 6778888888888888888888888887764

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.80  E-value=1.9e-17  Score=155.29  Aligned_cols=225  Identities=13%  Similarity=0.096  Sum_probs=163.2

Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHH
Q 045674          393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-------SYCY  465 (650)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-------~~~~  465 (650)
                      ..+..+...+...|++++|+..|+++.+..  .+...+..++.++...|++++|...++++++.. +.+       ..++
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~   82 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG-REMRADYKVISKSF   82 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC-cccccchHHHHHHH
Confidence            345556666666666666666666666555  355666666777777777777777777666642 111       4667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS  545 (650)
Q Consensus       466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  545 (650)
                      ..++.+|...|++++|...|+++.+..  |+.       ..+...|++++|...++++....+. +...+..++..+...
T Consensus        83 ~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  152 (258)
T 3uq3_A           83 ARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTK  152 (258)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHh
Confidence            777777777777777777777777653  332       3355667778888888887775333 455677788888888


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      |++++|...++++.+..+.+..++..++.++...|++++|++.++++++.. +.+..++..++.++...|++++|+..++
T Consensus       153 ~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~  231 (258)
T 3uq3_A          153 SDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLD  231 (258)
T ss_dssp             TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence            888888888888888777778888888888888888888888888888775 6667788888888888888888888888


Q ss_pred             HHHHCC
Q 045674          626 SKIGVG  631 (650)
Q Consensus       626 ~~~~~~  631 (650)
                      ++++..
T Consensus       232 ~a~~~~  237 (258)
T 3uq3_A          232 AARTKD  237 (258)
T ss_dssp             HHHHHH
T ss_pred             HHHHhC
Confidence            888876

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.78  E-value=2.9e-17  Score=161.03  Aligned_cols=234  Identities=11%  Similarity=0.064  Sum_probs=133.7

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR-VDEAEELFEEMVEKGCPRDSYCYNVLIDAL  472 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (650)
                      .|..+...+...|++++|+..++++++..+. +...|..+..++...|+ +++|+..|+++++.. +.+...|+.++.++
T Consensus        99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~  176 (382)
T 2h6f_A           99 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  176 (382)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            3444455555555566666666555555444 55555555555666664 666666666666553 44555666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh-cCCHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL-SGKVARA  551 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A  551 (650)
                      ...|++++|+..|+++++..+. +...|..++.++...|++++|+..++++++..+. +...|..++.++.. .|..++|
T Consensus       177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~eA  254 (382)
T 2h6f_A          177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  254 (382)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcchHH
Confidence            6666666666666666655443 5555666666666666666666666666655443 55555566665555 3443444


Q ss_pred             -----HHHHHHHhhCCCCcHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--------C
Q 045674          552 -----CKILDELAPKGIIPETAFEDMITCLCKTG--RIKEACKLADGIVDREREIPGKIRTALINALRKAG--------N  616 (650)
Q Consensus       552 -----~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--------~  616 (650)
                           +..+++++...|.+..+|..++.++...|  ++++|++.++++ +.+ +.+..++..++.+|.+.|        +
T Consensus       255 ~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~  332 (382)
T 2h6f_A          255 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKED  332 (382)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHH
T ss_pred             HHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHH
Confidence                 35666666666666666666666666655  456666666655 332 445555566666665543        2


Q ss_pred             -HHHHHHHHHHH-HHCCCC
Q 045674          617 -ADLAIKLMHSK-IGVGYD  633 (650)
Q Consensus       617 -~~~A~~~~~~~-~~~~~~  633 (650)
                       +++|+++++++ ++..+.
T Consensus       333 ~~~~A~~~~~~l~~~~DP~  351 (382)
T 2h6f_A          333 ILNKALELCEILAKEKDTI  351 (382)
T ss_dssp             HHHHHHHHHHHHHHTTCGG
T ss_pred             HHHHHHHHHHHHHHHhCch
Confidence             35666666666 555444

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=3.4e-17  Score=166.10  Aligned_cols=372  Identities=11%  Similarity=0.041  Sum_probs=183.8

Q ss_pred             HHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCCh---hHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC-
Q 045674          226 GLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKT---QKAMEKFRAMEARNVQPDKITYMTLIQACYLEG-  301 (650)
Q Consensus       226 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-  301 (650)
                      .+.+.|++++|..+|++..+.+   +..++..|...|...|+.   ++|++.|++..+.    +...+..|...+...+ 
T Consensus        12 ~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~~~   84 (452)
T 3e4b_A           12 EALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAKPG   84 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHHTC--
T ss_pred             HHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhCCC
Confidence            3344444555555554444332   222333344444444444   4555555554432    2333333444333332 


Q ss_pred             ----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCh---HHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHH
Q 045674          302 ----DFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKC---IEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMN  374 (650)
Q Consensus       302 ----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  374 (650)
                          ++++|...|++..+.|..   ..+..|...|...+..   .++.+.+......|   +...+..|...|...+.++
T Consensus        85 ~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~  158 (452)
T 3e4b_A           85 ATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQGTYD  158 (452)
T ss_dssp             CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGG
T ss_pred             CCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcc
Confidence                445555555555554322   2344444444443332   22333333333333   2233444555665555333


Q ss_pred             ----HHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----CCH
Q 045674          375 ----EAINIFERMKYEGVEPDEVTYGVIISGLCKNE---RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA----GRV  443 (650)
Q Consensus       375 ----~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~  443 (650)
                          .+..+++.....    +...+..+...|...|   +.++|++.|++..+.+.. +...+..+..+|...    +++
T Consensus       159 ~~~~~a~~~~~~a~~~----~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          159 QHLDDVERICKAALNT----TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             GGHHHHHHHHHHHTTT----CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHHHHTCGGGSSCCH
T ss_pred             cCHHHHHHHHHHHHcC----CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHHHHhCCCCCCCCH
Confidence                333333333322    2225556666666666   666777777766666544 444444555555444    567


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 045674          444 DEAEELFEEMVEKGCPRDSYCYNVLIDA-L--AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH-----RNEE  515 (650)
Q Consensus       444 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-----~~~~  515 (650)
                      ++|+..|+... .   .+...+..+..+ |  ...+++++|+..|++..+.|   +...+..|...|. .|     ++++
T Consensus       234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~  305 (452)
T 3e4b_A          234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA  305 (452)
T ss_dssp             HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred             HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence            77777777765 3   355556666665 3  34667777777777777654   5556666666665 34     7777


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 045674          516 ALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACK  587 (650)
Q Consensus       516 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  587 (650)
                      |...|++.. .   -+......++..|..    ..++++|..+|+++.+.|  +......|+.+|..    ..+.++|..
T Consensus       306 A~~~~~~Aa-~---g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~G~g~~~d~~~A~~  379 (452)
T 3e4b_A          306 AEAHFEKAV-G---REVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG--QNSADFAIAQLFSQGKGTKPDPLNAYV  379 (452)
T ss_dssp             HHHHHHTTT-T---TCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT--CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred             HHHHHHHHh-C---CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC--hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            777777766 2   255666666666654    237777777777777654  44556666666653    346777777


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          588 LADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      +|+++.+.| .++.......+......++..+|..+.++..+.
T Consensus       380 ~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~~  421 (452)
T 3e4b_A          380 FSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELAA  421 (452)
T ss_dssp             HHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHh
Confidence            777777665 222222222222222234556666666665543

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.77  E-value=4.7e-17  Score=147.55  Aligned_cols=199  Identities=18%  Similarity=0.029  Sum_probs=156.5

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          390 PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI  469 (650)
Q Consensus       390 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  469 (650)
                      ++...+..+...+.+.|++++|+..|+++.+..+. +...+..+..++.+.|++++|+..++++++.. |.+...+..++
T Consensus         3 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg   80 (217)
T 2pl2_A            3 TAEQNPLRLGVQLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS   80 (217)
T ss_dssp             -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence            34556777777788888888888888888877665 77778888888888888888888888888875 66778888888


Q ss_pred             HHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          470 DALAKC-----------GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL  538 (650)
Q Consensus       470 ~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  538 (650)
                      .++.+.           |++++|+..+++.++..+. +...+..++.++...|++++|+..|+++++..  .+...+..+
T Consensus        81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~l  157 (217)
T 2pl2_A           81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSAL  157 (217)
T ss_dssp             HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHH
Confidence            888888           9999999999999887654 77888889999999999999999999999876  588889999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIV  593 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  593 (650)
                      +.++...|++++|+..|+++++..|.+..++..++.++...|++++|++.+++..
T Consensus       158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999999999999999999988899999999999999999999999988764

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.77  E-value=9.9e-17  Score=151.69  Aligned_cols=244  Identities=11%  Similarity=-0.002  Sum_probs=132.8

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHH
Q 045674          396 GVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC--PRDSYCYNVLIDALA  473 (650)
Q Consensus       396 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~~~l~~~~~  473 (650)
                      ......+...|++++|+..|+.+.+..+. +...+..++.++...|++++|+..++++++...  ......|..++.+|.
T Consensus         7 ~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~   85 (272)
T 3u4t_A            7 FRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM   85 (272)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence            33444455555555555555555554433 333444555555555555555555555555210  011223555566666


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      ..|++++|++.|+++.+..+. +...+..++..+...|++++|+..++++++..+. +...+..++..+...+++++|.+
T Consensus        86 ~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~  163 (272)
T 3u4t_A           86 KKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKADS  163 (272)
T ss_dssp             HTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666554333 4455556666666666666666666666554322 44555555533333446666666


Q ss_pred             HHHHHhhCCCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCC-CCC------HHHHHHHHHHHHhcCCHHHHHHH
Q 045674          554 ILDELAPKGIIPETAFEDMITCLCKTGR---IKEACKLADGIVDRER-EIP------GKIRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       554 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~~~------~~~~~~l~~~~~~~g~~~~A~~~  623 (650)
                      .++++++..+.+...+..++.++...|+   +++|...++++++... .++      ..++..++..|...|++++|++.
T Consensus       164 ~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  243 (272)
T 3u4t_A          164 SFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAA  243 (272)
T ss_dssp             HHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            6666666655556666666666666665   5556666666654310 011      13555566666666666666666


Q ss_pred             HHHHHHCCCCChhhhhhhh
Q 045674          624 MHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~  642 (650)
                      ++++++..+........+.
T Consensus       244 ~~~al~~~p~~~~a~~~l~  262 (272)
T 3u4t_A          244 WKNILALDPTNKKAIDGLK  262 (272)
T ss_dssp             HHHHHHHCTTCHHHHHHHC
T ss_pred             HHHHHhcCccHHHHHHHhh
Confidence            6666666665544444433

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.77  E-value=2.6e-14  Score=149.47  Aligned_cols=474  Identities=10%  Similarity=0.022  Sum_probs=282.4

Q ss_pred             hhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCC---HHHHHH
Q 045674          127 PNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGM---VEELLW  203 (650)
Q Consensus       127 ~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~  203 (650)
                      +..-...|+.....  .+.+...|..++..+.+.+.++.++.+|++++.. +|.....|...+..-.+.|.   ++.+.+
T Consensus        48 ~~d~i~~lE~~l~~--np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~  124 (679)
T 4e6h_A           48 ESDVIGKLNDMIEE--QPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEP  124 (679)
T ss_dssp             CSCHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHH
T ss_pred             CHHHHHHHHHHHHH--CcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHH
Confidence            44445555544443  3457888888888888888888888888888776 46777788888877777777   888888


Q ss_pred             HHHHHHHCC-CCCCHHHHHHHHHHHHhcCCh--------hHHHHHHHHHhc-CCC-CC-ChhhHHHHHHHHHH-------
Q 045674          204 VWRSMKENG-IEPSLYTYNFLMNGLVNSMFI--------ESSELVFKVMEN-GKV-GP-DVVTYNTMIKGYCK-------  264 (650)
Q Consensus       204 ~~~~~~~~~-~~~~~~~~~~ll~~~~~~~~~--------~~A~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~~-------  264 (650)
                      +|++..... ..|++..|...+....+.++.        +...++|+..+. .|. .+ +...|...+.....       
T Consensus       125 lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~  204 (679)
T 4e6h_A          125 VLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKF  204 (679)
T ss_dssp             HHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHH
T ss_pred             HHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcH
Confidence            888887753 136777777776655554443        223456665543 233 23 23556655554332       


Q ss_pred             --cCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHH
Q 045674          265 --VGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGH  342 (650)
Q Consensus       265 --~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~  342 (650)
                        .++.+.+..+|++.+......-..+|..... +.+.-+...+.+++.+                     ...+++.|.
T Consensus       205 eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~-fe~~~~~~~a~~~~~e---------------------~~~~y~~Ar  262 (679)
T 4e6h_A          205 EEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQ-WEQDVNQLTARRHIGE---------------------LSAQYMNAR  262 (679)
T ss_dssp             HHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHH-HHHHHCTTTHHHHHHH---------------------HHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHH-HHHhcCcchHHHHHHH---------------------hhHHHHHHH
Confidence              2334555556655553211000111111100 0000000000000000                     011222233


Q ss_pred             HHHHHHHHc--CCC---cCH-HHHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-------CH
Q 045674          343 AIFESMIRR--GCQ---PNV-AIYTALIDSYAKLG-SMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE-------RL  408 (650)
Q Consensus       343 ~~~~~~~~~--~~~---~~~-~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~  408 (650)
                      ..+.++...  ++.   |.. ....  ....-..+ .....+               ..|...+..--..+       ..
T Consensus       263 ~~~~e~~~~~~~l~r~~p~~~~~~~--~~~~p~~~~~~~~ql---------------~lW~~yi~fEk~~~~~l~~~~~~  325 (679)
T 4e6h_A          263 SLYQDWLNITKGLKRNLPITLNQAT--ESNLPKPNEYDVQQL---------------LIWLEWIRWESDNKLELSDDLHK  325 (679)
T ss_dssp             HHHHHHHHHTTTCCCCCCSSSTTCC--TTTSCCTTCCCHHHH---------------HHHHHHHHHHHTCTTCCCHHHHH
T ss_pred             HHHHHHHHHHHhHhhccccccccch--hccCCCCchhHHHHH---------------HHHHHHHHHHHhCCccccchhhH
Confidence            333222110  000   000 0000  00000000 000001               12333332211111       12


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE-ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR  487 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (650)
                      +.+..+|++++...+. ....|...+..+...|+.++|. .+|++++.. +|.+...|..++....+.|+++.|.++|++
T Consensus       326 ~Rv~~~Ye~aL~~~p~-~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek  403 (679)
T 4e6h_A          326 ARMTYVYMQAAQHVCF-APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILS  403 (679)
T ss_dssp             HHHHHHHHHHHHHTTT-CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            3455677777766444 7788888888888888888886 999998876 467777788888888889999999999998


Q ss_pred             HHHcCC---------CC------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          488 MEDEGC---------DQ------------TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       488 ~~~~~~---------~~------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      +++...         .|            ....|...+....+.|..+.|..+|.++.+.-.......|...+..-.+.|
T Consensus       404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~  483 (679)
T 4e6h_A          404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS  483 (679)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred             HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence            876310         12            133577777777788999999999999987612223445555554445554


Q ss_pred             -CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          547 -KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE--IPGKIRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       547 -~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~  623 (650)
                       +.+.|.++|+.+++..+.+...+..++......|+.+.|..+|+++++...+  .....|..++..-.+.|+.+.+.++
T Consensus       484 ~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v  563 (679)
T 4e6h_A          484 KDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL  563 (679)
T ss_dssp             SCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence             5899999999999987778888889999999999999999999999987521  1356788888888899999999999


Q ss_pred             HHHHHHCCCCChhhhhhhhcc
Q 045674          624 MHSKIGVGYDRMGSIKRRVKF  644 (650)
Q Consensus       624 ~~~~~~~~~~~~~~~~~~~~~  644 (650)
                      .+++.+.-|..+..-.-.-||
T Consensus       564 ~~R~~~~~P~~~~~~~f~~ry  584 (679)
T 4e6h_A          564 EKRFFEKFPEVNKLEEFTNKY  584 (679)
T ss_dssp             HHHHHHHSTTCCHHHHHHHHT
T ss_pred             HHHHHHhCCCCcHHHHHHHHh
Confidence            999999888754433333344

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.77  E-value=7.8e-17  Score=151.00  Aligned_cols=226  Identities=13%  Similarity=0.093  Sum_probs=173.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--C----HHHHH
Q 045674          358 AIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAV--N----AMFYS  431 (650)
Q Consensus       358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~----~~~~~  431 (650)
                      ..+..++..+...|++++|+.+|+++.+..  .+...+..+..++...|++++|+..++.+.+..+..  +    ..++.
T Consensus         6 ~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~   83 (258)
T 3uq3_A            6 DKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA   83 (258)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence            455666677777777777777777776654  456667777777777777777777777666543221  1    46777


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH  511 (650)
Q Consensus       432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  511 (650)
                      .++.++...|++++|...++++....  ++.       ..+.+.|++++|...++++....+. +...+..++..+...|
T Consensus        84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~  153 (258)
T 3uq3_A           84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKS  153 (258)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhc
Confidence            78888888888888888888888753  442       3456667788888888888876433 5667778888888889


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG  591 (650)
Q Consensus       512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  591 (650)
                      ++++|...++++++..+. +...+..++.++...|++++|...++++++..+.+..++..++.++...|++++|.+.+++
T Consensus       154 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  232 (258)
T 3uq3_A          154 DWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDA  232 (258)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            999999999988876544 6778888889999999999999999999988888888899999999999999999999998


Q ss_pred             HHHcC
Q 045674          592 IVDRE  596 (650)
Q Consensus       592 ~~~~~  596 (650)
                      +++..
T Consensus       233 a~~~~  237 (258)
T 3uq3_A          233 ARTKD  237 (258)
T ss_dssp             HHHHH
T ss_pred             HHHhC
Confidence            88763

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.77  E-value=4.5e-17  Score=165.18  Aligned_cols=350  Identities=11%  Similarity=0.001  Sum_probs=249.0

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          257 TMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDF---DSCLSLYHEMDEKGIEIPSHAYNLVIGGLC  333 (650)
Q Consensus       257 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  333 (650)
                      .+...+.+.|++++|+++|++..+.|   +...+..|...|...|+.   ++|...|++..+.    +...+..+...+.
T Consensus         8 ~la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~   80 (452)
T 3e4b_A            8 RLANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLA   80 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC--------------------------------CHHHHHHHHH
T ss_pred             HHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHH
Confidence            36677888999999999999998765   344556677777778888   8999999998855    5556777777555


Q ss_pred             hcC-----ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhc
Q 045674          334 KVG-----KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSM---NEAINIFERMKYEGVEPDEVTYGVIISGLCKN  405 (650)
Q Consensus       334 ~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  405 (650)
                      ..+     +.++|...|++..+.|...   .+..|...|...+..   .++.+.+.+....|   +...+..+...|...
T Consensus        81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~y~~~  154 (452)
T 3e4b_A           81 AKPGATEAEHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLLYRTQ  154 (452)
T ss_dssp             TC--CCHHHHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHHHHHH
T ss_pred             hCCCCCCcCHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC
Confidence            555     7789999999999976432   566688888776543   34555666555543   344666777778888


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc----CCH
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG---RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC----GKL  478 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~  478 (650)
                      +.++++......+.+.-...+...+..+..+|...|   +.++|++.|+...+.| +++...+..+..+|...    +++
T Consensus       155 ~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~  233 (452)
T 3e4b_A          155 GTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDE  233 (452)
T ss_dssp             TCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCH
T ss_pred             CCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCH
Confidence            865555544333222211113337788999999999   9999999999999997 67777778888888765    799


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-----CHHH
Q 045674          479 DEALALFKRMEDEGCDQTVYTYTILING-M--FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-----KVAR  550 (650)
Q Consensus       479 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~  550 (650)
                      ++|+..|++.. .   -+...+..|... +  ...+++++|+..|++..+.|   +...+..++..|. .|     ++++
T Consensus       234 ~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~  305 (452)
T 3e4b_A          234 KTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKA  305 (452)
T ss_dssp             HHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHH
T ss_pred             HHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHH
Confidence            99999999988 3   366677777776 4  46899999999999999876   6778888888887 55     9999


Q ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 045674          551 ACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINALRK----AGNADLAIK  622 (650)
Q Consensus       551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  622 (650)
                      |.++|+++.   +.+......|+.+|..    ..++++|.++|+++.+.+   +......++..|..    ..+.++|..
T Consensus       306 A~~~~~~Aa---~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~  379 (452)
T 3e4b_A          306 AEAHFEKAV---GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKPDPLNAYV  379 (452)
T ss_dssp             HHHHHHTTT---TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred             HHHHHHHHh---CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence            999999999   5588899999988877    349999999999999865   45567778888774    459999999


Q ss_pred             HHHHHHHCCCCC
Q 045674          623 LMHSKIGVGYDR  634 (650)
Q Consensus       623 ~~~~~~~~~~~~  634 (650)
                      +++++.+.|...
T Consensus       380 ~~~~A~~~g~~~  391 (452)
T 3e4b_A          380 FSQLAKAQDTPE  391 (452)
T ss_dssp             HHHHHHTTCCHH
T ss_pred             HHHHHHHCCCHH
Confidence            999999998753

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.77  E-value=1e-16  Score=157.21  Aligned_cols=250  Identities=10%  Similarity=0.038  Sum_probs=205.5

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          357 VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNER-LEEAMQYFEFCRANGVAVNAMFYSSLID  435 (650)
Q Consensus       357 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~  435 (650)
                      ...|..+...+...|++++|+..|++++..... +...|..+..++...|+ +++|+..|+++++.++. +...|..+..
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~  174 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  174 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
Confidence            456777788888888899999999888875322 46778888888888886 99999999988888776 7888888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHH
Q 045674          436 GLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK-EHRNE  514 (650)
Q Consensus       436 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~  514 (650)
                      ++...|++++|+..|+++++.. +.+...|..++.++.+.|++++|+..++++++..+. +...|+.++.++.. .|..+
T Consensus       175 ~~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P~-~~~a~~~lg~~l~~l~~~~~  252 (382)
T 2h6f_A          175 LVEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYND  252 (382)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCS
T ss_pred             HHHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCcch
Confidence            9999999999999999999886 778889999999999999999999999999988665 78888888888888 56557


Q ss_pred             HH-----HHHHHHHHHCCCCCCHHHHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-------
Q 045674          515 EA-----LKLWDMMIDKGITPTAASFRALSIGLCLSG--KVARACKILDELAPKGIIPETAFEDMITCLCKTG-------  580 (650)
Q Consensus       515 ~A-----~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------  580 (650)
                      +|     +..++++++..+. +...|..++.++...|  ++++|.+.++++ +..+.+..++..++.+|.+.|       
T Consensus       253 eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~  330 (382)
T 2h6f_A          253 RAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNK  330 (382)
T ss_dssp             HHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSH
T ss_pred             HHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccch
Confidence            77     5888888886555 6778888888888888  689999999888 777778899999999998874       


Q ss_pred             -C-HHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHHh
Q 045674          581 -R-IKEACKLADGI-VDREREIPGKIRTALINALRK  613 (650)
Q Consensus       581 -~-~~~A~~~~~~~-~~~~~~~~~~~~~~l~~~~~~  613 (650)
                       + +++|+++|+++ .+.+ +.....|..++..+..
T Consensus       331 ~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l~~  365 (382)
T 2h6f_A          331 EDILNKALELCEILAKEKD-TIRKEYWRYIGRSLQS  365 (382)
T ss_dssp             HHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHH
Confidence             2 58999999998 7765 5567778777776654

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.76  E-value=9.6e-17  Score=148.90  Aligned_cols=215  Identities=16%  Similarity=0.168  Sum_probs=140.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      ....+..++..+...|++++|...|+++.+.. +.+...+..++.+|...|++++|+..++++.+..+. +...+..++.
T Consensus        22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~   99 (243)
T 2q7f_A           22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELDSS-AATAYYGAGN   99 (243)
T ss_dssp             --------------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCc-chHHHHHHHH
Confidence            34455566666777777777777777777653 556677777777777777777777777777765433 5666777777


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      .+...|++++|..+++++.+.... +...+..++..+...|++++|..+++++.+..+.+..++..++.++...|++++|
T Consensus       100 ~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          100 VYVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence            777777777777777777765433 5666777777777777777777777777777677777777777778888888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhhcc
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRVKF  644 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~  644 (650)
                      ++.++++++.. +.+..++..++.+|...|++++|+..++++++..+........+...
T Consensus       179 ~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l  236 (243)
T 2q7f_A          179 LSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL  236 (243)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred             HHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence            88887777765 55677777777777888888888888888877777766555554443

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.75  E-value=6.8e-16  Score=144.03  Aligned_cols=208  Identities=13%  Similarity=0.021  Sum_probs=160.4

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING  506 (650)
Q Consensus       427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  506 (650)
                      ...+..++..+...|++++|...++++.+.. +.+...+..++.+|...|++++|.+.++++.+..+. +...+..++..
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASDSR-NARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHH
Confidence            4556667777777888888888888777764 556777778888888888888888888887776443 66777777888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          507 MFKEHRNEEALKLWDMMIDKGITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      +...|++++|.++++++.+.+..| +...+..++.++...|++++|..+++++.+..+.+...+..++.++...|++++|
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A  194 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA  194 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence            888888888888888887632233 4556777788888888888888888888887777788888888888888888888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  637 (650)
                      ..+++++++.. +.+...+..++..+...|++++|.+.++++++..+.....
T Consensus       195 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~  245 (252)
T 2ho1_A          195 RQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSLEY  245 (252)
T ss_dssp             HHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSHHH
T ss_pred             HHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCHHH
Confidence            88888888765 5677777888888888888888888888888877664443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.75  E-value=5.1e-16  Score=146.77  Aligned_cols=251  Identities=11%  Similarity=0.010  Sum_probs=186.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHH
Q 045674          359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV--AVNAMFYSSLIDG  436 (650)
Q Consensus       359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~  436 (650)
                      .+...+..+...|++++|+.+|+++.+.... +...+..+...+...|++++|+..++++.+...  ......|..++..
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~   83 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKI   83 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHH
Confidence            3445667777888888888888887765321 344677777788888888888888888777332  2224457788888


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA  516 (650)
Q Consensus       437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  516 (650)
                      +...|++++|+..++++.+.. +.+..++..++.+|...|++++|+..+++..+..+. +...+..++..+...+++++|
T Consensus        84 ~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A  161 (272)
T 3u4t_A           84 LMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTT-DPKVFYELGQAYYYNKEYVKA  161 (272)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCC-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCC-cHHHHHHHHHHHHHHHHHHHH
Confidence            888888888888888888874 567788888888899999999999999888876433 677777777344455699999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCC---CCc-----HHHHHHHHHHHHHcCCHHHH
Q 045674          517 LKLWDMMIDKGITPTAASFRALSIGLCLSGK---VARACKILDELAPKG---IIP-----ETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~---~~~-----~~~~~~l~~~~~~~g~~~~A  585 (650)
                      ...++++++..+. +...+..++.++...|+   +++|...++++.+..   +.+     ..++..++.++...|++++|
T Consensus       162 ~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  240 (272)
T 3u4t_A          162 DSSFVKVLELKPN-IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKA  240 (272)
T ss_dssp             HHHHHHHHHHSTT-CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHhCcc-chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHH
Confidence            9999998876444 56777788888888887   888888888887653   221     25778899999999999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKA  614 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (650)
                      .+.++++++.+ |.+..++..+.......
T Consensus       241 ~~~~~~al~~~-p~~~~a~~~l~~~~~~~  268 (272)
T 3u4t_A          241 DAAWKNILALD-PTNKKAIDGLKMKLEHH  268 (272)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHC------
T ss_pred             HHHHHHHHhcC-ccHHHHHHHhhhhhccc
Confidence            99999999886 67777777766554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.74  E-value=7e-15  Score=138.92  Aligned_cols=226  Identities=13%  Similarity=0.022  Sum_probs=166.5

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYN  466 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~  466 (650)
                      +..++..+...+...|++++|+..|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            34455566666666677777777777666632   44556667777777    777777777777777764   666777


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          467 VLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGITPTAASFRAL  538 (650)
Q Consensus       467 ~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  538 (650)
                      .++.+|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|+..|+++.+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            77777777    777888887777777763   66677777777777    788888888888877754   55667777


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          539 SIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       539 ~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      +..+..    .+++++|..+++++.+.+  +...+..++.++..    .+++++|++.++++++.+   +...+..++.+
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~--~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~  227 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAM  227 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHH
Confidence            777777    788888888888887763  56777788888888    888888888888888764   36677778888


Q ss_pred             HHh----cCCHHHHHHHHHHHHHCCCC
Q 045674          611 LRK----AGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       611 ~~~----~g~~~~A~~~~~~~~~~~~~  633 (650)
                      |..    .+++++|++.++++++.|+.
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~~~~  254 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKLGAK  254 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHcCCH
Confidence            887    88888888888888887654

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.73  E-value=2.4e-15  Score=137.54  Aligned_cols=208  Identities=13%  Similarity=0.034  Sum_probs=167.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      +...+..++..+...|++++|.+.++++.+.. +.+...+..++.+|...|++++|...++++.+..+. +..++..++.
T Consensus         7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~   84 (225)
T 2vq2_A            7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPD-SAEINNNYGW   84 (225)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-ChHHHHHHHH
Confidence            45567777888888888888888888888764 566778888888888888888888888888876443 6777888888


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674          506 GMFKE-HRNEEALKLWDMMIDKGITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       506 ~~~~~-~~~~~A~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  583 (650)
                      .+... |++++|...++++.+.+..| +...+..++.++...|++++|..+++++.+..+.+...+..++.++...|+++
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           85 FLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHH
Confidence            88888 88888888888888732233 35677788888888899999999999888887778888888999999999999


Q ss_pred             HHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          584 EACKLADGIVDRERE-IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       584 ~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      +|.++++++++.. + .+...+..++..+...|+.++|..+++.+.+..+....
T Consensus       165 ~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~  217 (225)
T 2vq2_A          165 DADYYFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEE  217 (225)
T ss_dssp             HHHHHHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHH
Confidence            9999999888876 5 67777777888888889999999988888877666443

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.73  E-value=3.6e-16  Score=145.01  Aligned_cols=216  Identities=13%  Similarity=0.080  Sum_probs=157.8

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA  471 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  471 (650)
                      ...+..+...+...|++++|...|+++.+..+. +...+..++..+...|++++|...++++.+.. +.+...+..++..
T Consensus        23 ~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~  100 (243)
T 2q7f_A           23 SMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV  100 (243)
T ss_dssp             -------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence            445666666777778888888888877776544 67777778888888888888888888888764 5677888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA  551 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  551 (650)
                      |...|++++|.+.++++.+.... +...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|
T Consensus       101 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A  178 (243)
T 2q7f_A          101 YVVKEMYKEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELNEN-DTEARFQFGMCLANEGMLDEA  178 (243)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCHHH
T ss_pred             HHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHcCCHHHH
Confidence            88888888888888888876543 6777888888888888999999888888876443 677888888888999999999


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      .++++++.+..+.+..++..++.++...|++++|.+.++++++.. +.+..++..+.....
T Consensus       179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~l~~  238 (243)
T 2q7f_A          179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ-PDHMLALHAKKLLGH  238 (243)
T ss_dssp             HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC-TTCHHHHHHHTC---
T ss_pred             HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC-cchHHHHHHHHHHHh
Confidence            999999988878888888999999999999999999999998876 666666666554433

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.72  E-value=1.8e-14  Score=136.13  Aligned_cols=224  Identities=11%  Similarity=-0.045  Sum_probs=178.7

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 045674          356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYS  431 (650)
Q Consensus       356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~  431 (650)
                      +...+..+...|...|++++|+.+|++..+.   -+...+..+...|..    .+++++|+..|++..+.+   +...+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~   78 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH   78 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence            4556667777777888888888888877763   245566777777777    888888888888877765   667777


Q ss_pred             HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          432 SLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTIL  503 (650)
Q Consensus       432 ~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  503 (650)
                      .+...|..    .+++++|+..|++..+.+   +...+..+...|..    .+++++|+..|++..+.+   +...+..+
T Consensus        79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l  152 (273)
T 1ouv_A           79 LLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTIL  152 (273)
T ss_dssp             HHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred             HHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHH
Confidence            78888888    888888888888888764   67788888888888    888888888888888864   56677778


Q ss_pred             HHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          504 INGMFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       504 ~~~~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      ...|..    .+++++|+..++++.+.+   +...+..++..|..    .+++++|..+++++.+.++  ...+..++.+
T Consensus       153 g~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~  227 (273)
T 1ouv_A          153 GSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAM  227 (273)
T ss_dssp             HHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHH
T ss_pred             HHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHH
Confidence            887877    888899999888888763   56777788888888    8899999999998888754  7778888888


Q ss_pred             HHH----cCCHHHHHHHHHHHHHcC
Q 045674          576 LCK----TGRIKEACKLADGIVDRE  596 (650)
Q Consensus       576 ~~~----~g~~~~A~~~~~~~~~~~  596 (650)
                      +..    .+++++|.+.++++.+.+
T Consensus       228 ~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          228 QYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHcCCCcccCHHHHHHHHHHHHHcC
Confidence            888    889999999999998876

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.72  E-value=4.9e-15  Score=138.19  Aligned_cols=209  Identities=11%  Similarity=-0.035  Sum_probs=173.7

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA  471 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  471 (650)
                      ...+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++|.+.++++.+.. +.+...+..++.+
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~  114 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGF  114 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHH
Confidence            345667777788888888888888888776544 67788888888999999999999999988875 5678888889999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          472 LAKCGKLDEALALFKRMEDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR  550 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  550 (650)
                      |...|++++|.+.++++.+.+..| +...+..++.++...|++++|...++++.+..+. +...+..++..+...|++++
T Consensus       115 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~g~~~~  193 (252)
T 2ho1_A          115 LYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRN-QPSVALEMADLLYKEREYVP  193 (252)
T ss_dssp             HHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHcCCHHH
Confidence            999999999999999988732233 5667888888899999999999999999876543 67888899999999999999


Q ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIR  604 (650)
Q Consensus       551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  604 (650)
                      |..+++++.+..+.+...+..++.++...|++++|.++++++.+.. +.+....
T Consensus       194 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~  246 (252)
T 2ho1_A          194 ARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY-PGSLEYQ  246 (252)
T ss_dssp             HHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSHHHH
T ss_pred             HHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCCHHHH
Confidence            9999999999888888899999999999999999999999999875 4455443

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.71  E-value=2.1e-15  Score=133.02  Aligned_cols=171  Identities=13%  Similarity=0.082  Sum_probs=143.1

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS  539 (650)
Q Consensus       460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~  539 (650)
                      .+..+|..++..|.+.|++++|++.|++.++..+. +..++..++.+|...|++++|...+.++....+. +...+..++
T Consensus         3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~   80 (184)
T 3vtx_A            3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILG   80 (184)
T ss_dssp             -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHH
Confidence            46678888888888888888888888888887654 7778888888888888888888888888876544 667777788


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADL  619 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  619 (650)
                      ..+...++++.|...++++.+..+.+..++..++.++...|++++|++.|+++++.+ |.+..+|..++.+|.+.|++++
T Consensus        81 ~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           81 SANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence            888888899999999988888888888888889999999999999999999988886 6778888888999999999999


Q ss_pred             HHHHHHHHHHCCCC
Q 045674          620 AIKLMHSKIGVGYD  633 (650)
Q Consensus       620 A~~~~~~~~~~~~~  633 (650)
                      |++.++++++..+.
T Consensus       160 A~~~~~~al~~~p~  173 (184)
T 3vtx_A          160 AVKYFKKALEKEEK  173 (184)
T ss_dssp             HHHHHHHHHHTTHH
T ss_pred             HHHHHHHHHhCCcc
Confidence            99999999887543

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.71  E-value=1e-15  Score=144.99  Aligned_cols=246  Identities=12%  Similarity=-0.096  Sum_probs=179.7

Q ss_pred             hcCCHHHHHHHHHHHHHCCCC---CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVE---PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE  445 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~---p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  445 (650)
                      ..|++++|+..|+++.+....   .+...+..+...+...|++++|...|+++.+..+. +...+..++.++...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence            456778888888877764221   13456777777788888888888888888776554 67788888888888888888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      |...++++++.. +.+...+..++.+|.+.|++++|...++++.+..+  +.......+..+...|++++|...++++..
T Consensus        96 A~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  172 (275)
T 1xnf_A           96 AYEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHFE  172 (275)
T ss_dssp             HHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence            888888888874 56778888888888888999999998888887643  333333344455667889999999988776


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII----PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG  601 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  601 (650)
                      .... +...+ .++..+...++.++|...++++.+..+.    +..++..++.++...|++++|...++++++.+ +.+.
T Consensus       173 ~~~~-~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~  249 (275)
T 1xnf_A          173 KSDK-EQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN-VHNF  249 (275)
T ss_dssp             HSCC-CSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-CTTC
T ss_pred             cCCc-chHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-chhH
Confidence            5332 33333 3666677788888899999888876543    25788889999999999999999999999765 3333


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHH
Q 045674          602 KIRTALINALRKAGNADLAIKLM  624 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~  624 (650)
                      .   ....++...|++++|++.+
T Consensus       250 ~---~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          250 V---EHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             H---HHHHHHHHHHHHHHC----
T ss_pred             H---HHHHHHHHHHHHHhhHHHH
Confidence            3   3356778889999988776

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.70  E-value=1.5e-14  Score=132.15  Aligned_cols=210  Identities=11%  Similarity=0.007  Sum_probs=161.5

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA  471 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  471 (650)
                      ...+..+...+...|++++|...++.+.+..+. +...+..++..+...|++++|.+.++++.+.. +.+..++..++.+
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~   85 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWF   85 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            445666677777777777777777777765543 56677778888888888888888888887764 5677788888888


Q ss_pred             HHHc-CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          472 LAKC-GKLDEALALFKRMEDEGCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVA  549 (650)
Q Consensus       472 ~~~~-g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~  549 (650)
                      |... |++++|...++++.+.+..| +...+..++.++...|++++|...++++.+..+. +...+..++.++...|+++
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~  164 (225)
T 2vq2_A           86 LCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQ-FPPAFKELARTKMLAGQLG  164 (225)
T ss_dssp             HHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHH
T ss_pred             HHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CchHHHHHHHHHHHcCCHH
Confidence            8888 88888888888887732222 3567777888888888888888888888876443 5777888888888889999


Q ss_pred             HHHHHHHHHhhCCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          550 RACKILDELAPKGI-IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRT  605 (650)
Q Consensus       550 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  605 (650)
                      +|..+++++.+..+ .+...+..++..+...|+.++|..+++.+.+.. +.+.....
T Consensus       165 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~  220 (225)
T 2vq2_A          165 DADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANF-PYSEELQT  220 (225)
T ss_dssp             HHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHH
Confidence            99999998888878 777888888888888899999988888887764 44554443

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.68  E-value=7.8e-16  Score=155.23  Aligned_cols=204  Identities=14%  Similarity=0.060  Sum_probs=123.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGK-----------------LDEALALFK  486 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~-----------------~~~A~~~~~  486 (650)
                      .+..+...|...|++++|...++++.+.    + .+....++..++.+|...|+                 +++|++.++
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~  207 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ  207 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence            3444555555555555555555554432    0 01123345555666666666                 666666665


Q ss_pred             HHHHc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          487 RMEDE----GC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILD  556 (650)
Q Consensus       487 ~~~~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~  556 (650)
                      +..+.    +. .....++..++..+...|++++|...++++.+.... .+    ...+..++.++...|++++|..+++
T Consensus       208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  287 (411)
T 4a1s_A          208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK  287 (411)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence            54331    10 112335666666777777777777777776642111 11    2256677777778888888888887


Q ss_pred             HHhhCCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          557 ELAPKGII------PETAFEDMITCLCKTGRIKEACKLADGIVDRER-----EIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       557 ~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      ++.+..+.      ...++..++.++...|++++|.++++++++...     .....++..++.+|...|++++|.+.++
T Consensus       288 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  367 (411)
T 4a1s_A          288 RTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAE  367 (411)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHH
Confidence            77653221      245677788888888888888888887765420     0113466777888888888888888888


Q ss_pred             HHHHCCC
Q 045674          626 SKIGVGY  632 (650)
Q Consensus       626 ~~~~~~~  632 (650)
                      ++++...
T Consensus       368 ~al~~~~  374 (411)
T 4a1s_A          368 QHLQLAX  374 (411)
T ss_dssp             HHHHHCC
T ss_pred             HHHHHHh
Confidence            8877643

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.67  E-value=2.3e-15  Score=153.62  Aligned_cols=212  Identities=12%  Similarity=-0.008  Sum_probs=167.2

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRV-DEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK  486 (650)
Q Consensus       408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (650)
                      +++++..++....... .+...+..++..+...|++ ++|++.|+++++.. +.+...|..++.+|.+.|++++|+..|+
T Consensus        84 ~~~al~~l~~~~~~~~-~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQ-VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE-PELVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTCC-CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccCc-hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            4556666666555443 3677777788888888888 88888888888774 5667788888888888888888888888


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhc---------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc--------CCHH
Q 045674          487 RMEDEGCDQTVYTYTILINGMFKE---------HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS--------GKVA  549 (650)
Q Consensus       487 ~~~~~~~~~~~~~~~~l~~~~~~~---------~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~--------g~~~  549 (650)
                      ++++..  |+...+..+..++...         |++++|+..++++++..+. +...+..++.+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            888764  4567777788888787         8888888888888876544 677788888888877        8888


Q ss_pred             HHHHHHHHHhhCCC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          550 RACKILDELAPKGI---IPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       550 ~A~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      +|++.|+++++..+   .+..++..++.++...|++++|++.|+++++.. +.+..++..++.++...|++++|++.+.
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~  316 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG  316 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            88888888888777   688888888888888888888888888888876 6677788888888888888888887544

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.67  E-value=1e-14  Score=137.93  Aligned_cols=227  Identities=11%  Similarity=-0.026  Sum_probs=189.0

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 045674          403 CKNERLEEAMQYFEFCRANGVA---VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD  479 (650)
Q Consensus       403 ~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  479 (650)
                      ...|++++|+..++.+.+....   .+..++..++..+...|++++|...|+++++.. +.+..++..++.+|...|+++
T Consensus        16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~   94 (275)
T 1xnf_A           16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFD   94 (275)
T ss_dssp             CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHH
T ss_pred             CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHH
Confidence            3468899999999999886421   246778889999999999999999999999985 678999999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          480 EALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       480 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      +|...|+++.+..+. +...+..++.++...|++++|...++++.+..+  +..........+...|++++|...++++.
T Consensus        95 ~A~~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~--~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  171 (275)
T 1xnf_A           95 AAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP--NDPFRSLWLYLAEQKLDEKQAKEVLKQHF  171 (275)
T ss_dssp             HHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT--TCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence            999999999997544 678899999999999999999999999998643  33333334445567799999999999998


Q ss_pred             hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE---IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      ...+.+...+. ++..+...++.++|.+.++++++....   .+..++..++.+|...|++++|+..++++++..+..
T Consensus       172 ~~~~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~  248 (275)
T 1xnf_A          172 EKSDKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHN  248 (275)
T ss_dssp             HHSCCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTT
T ss_pred             hcCCcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchh
Confidence            87666555544 777788889999999999999865311   125788899999999999999999999999988753

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.67  E-value=8.6e-12  Score=130.47  Aligned_cols=447  Identities=11%  Similarity=0.046  Sum_probs=268.7

Q ss_pred             cCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCC-CCCC
Q 045674          106 LIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGD---VDRVRLVFNELKEKG-FLMT  181 (650)
Q Consensus       106 ~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~-~~~~  181 (650)
                      ..+.+.+.-...+..+...+..+.+..+|+.+...  +|.+...|...+..-.+.|+   ++.+..+|++.+... .+++
T Consensus        61 ~np~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal~~~~~~~s  138 (679)
T 4e6h_A           61 EQPTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCLSKELGNND  138 (679)
T ss_dssp             HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHTCSSSCCCC
T ss_pred             HCcCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHHhcCCCCC
Confidence            35566777777777777778999999999998887  77888999999999999999   999999999999863 1389


Q ss_pred             HHHHHHHHHHHHcCCCH--------HHHHHHHHHHHHC-CC-CC-CHHHHHHHHHHHHh---------cCChhHHHHHHH
Q 045674          182 VSAANSLIKSFGGLGMV--------EELLWVWRSMKEN-GI-EP-SLYTYNFLMNGLVN---------SMFIESSELVFK  241 (650)
Q Consensus       182 ~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~~-~~-~~-~~~~~~~ll~~~~~---------~~~~~~A~~~~~  241 (650)
                      +..|...+....+.++.        +...++|++.... |. .+ +...|...+.....         .++++.+..+|+
T Consensus       139 v~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~~~~R~iy~  218 (679)
T 4e6h_A          139 LSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRVQYIRKLYK  218 (679)
T ss_dssp             HHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHHHHHHHHHH
Confidence            99999888766655543        3455788876653 55 44 45678777765542         345678899999


Q ss_pred             HHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCC
Q 045674          242 VMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEK--GIE  319 (650)
Q Consensus       242 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~  319 (650)
                      +++......-..+|......-...+ ...+..++.+                     ...+++.|...+.++...  ++.
T Consensus       219 raL~iP~~~~~~~w~~Y~~fe~~~~-~~~a~~~~~e---------------------~~~~y~~Ar~~~~e~~~~~~~l~  276 (679)
T 4e6h_A          219 TLLCQPMDCLESMWQRYTQWEQDVN-QLTARRHIGE---------------------LSAQYMNARSLYQDWLNITKGLK  276 (679)
T ss_dssp             HHTTSCCSSHHHHHHHHHHHHHHHC-TTTHHHHHHH---------------------HHHHHHHHHHHHHHHHHHTTTCC
T ss_pred             HHHhCccHHHHHHHHHHHHHHHhcC-cchHHHHHHH---------------------hhHHHHHHHHHHHHHHHHHHhHh
Confidence            9885311111223322221111101 1111111111                     112344555555554321  111


Q ss_pred             ----CCHHHHHHHHHHHHhcC-ChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcC-------CHHHHHHHHHHHHHCC
Q 045674          320 ----IPSHAYNLVIGGLCKVG-KCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLG-------SMNEAINIFERMKYEG  387 (650)
Q Consensus       320 ----~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-------~~~~A~~~~~~~~~~~  387 (650)
                          .......  ....-..+ .......+               |...+.--...+       ..+.+..+|+++...-
T Consensus       277 r~~p~~~~~~~--~~~~p~~~~~~~~ql~l---------------W~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~~  339 (679)
T 4e6h_A          277 RNLPITLNQAT--ESNLPKPNEYDVQQLLI---------------WLEWIRWESDNKLELSDDLHKARMTYVYMQAAQHV  339 (679)
T ss_dssp             CCCCSSSTTCC--TTTSCCTTCCCHHHHHH---------------HHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT
T ss_pred             hccccccccch--hccCCCCchhHHHHHHH---------------HHHHHHHHHhCCccccchhhHHHHHHHHHHHHHHc
Confidence                0000000  00000000 00011111               111111111110       1234455666665431


Q ss_pred             CCCCHHhHHHHHHHHHhcCCHHHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------
Q 045674          388 VEPDEVTYGVIISGLCKNERLEEAM-QYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG---------  457 (650)
Q Consensus       388 ~~p~~~~~~~l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~---------  457 (650)
                       .-....|...+..+...|+.++|. ++|++.....+ .+...+..++....+.|++++|.++|+.++...         
T Consensus       340 -p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P-~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~  417 (679)
T 4e6h_A          340 -CFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCIP-NSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALME  417 (679)
T ss_dssp             -TTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             -CCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhh
Confidence             225566666666667777777775 77777776433 356666667777777777888888877776531         


Q ss_pred             -CCC-----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHH
Q 045674          458 -CPR-----------DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE-HRNEEALKLWDMMI  524 (650)
Q Consensus       458 -~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~  524 (650)
                       .+.           ...+|...+....+.|+.+.|..+|.++.+.-.......|...+..-.+. ++.+.|..+|+..+
T Consensus       418 ~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~L  497 (679)
T 4e6h_A          418 DDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHISKDTKTACKVLELGL  497 (679)
T ss_dssp             HSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHH
T ss_pred             ccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence             111           23467777777777888888888888887751112233343333322333 44788888888888


Q ss_pred             HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          525 DKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       525 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +.- .-+...+...+......|+.+.|..+|++++...+.   ...+|..++..-...|+.+.+.++.+++.+..
T Consensus       498 k~~-p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~  571 (679)
T 4e6h_A          498 KYF-ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF  571 (679)
T ss_dssp             HHH-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred             HHC-CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence            752 335666667777777788888888888888877662   55778888888888888888888888888774

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.66  E-value=7.8e-14  Score=134.04  Aligned_cols=222  Identities=12%  Similarity=0.071  Sum_probs=174.7

Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-------HcCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674          409 EEAMQYFEFCRANGVAVNAMFYSSLIDGLG-------KAGRV-------DEAEELFEEMVEKGCPRDSYCYNVLIDALAK  474 (650)
Q Consensus       409 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (650)
                      ++|...|+++....+. +...|..++..+.       ..|++       ++|..+|++.++.-.|.+...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence            5677778777776544 6677777776665       34775       8899999999883225677788889999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH-hcCCHHHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVY-TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC-LSGKVARAC  552 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~  552 (650)
                      .|++++|.++|+++++..+. +.. .|..++..+.+.|++++|..+|+++++..+. +...+...+.... ..|++++|.
T Consensus       112 ~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A~  189 (308)
T 2ond_A          112 RMKYEKVHSIYNRLLAIEDI-DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAF  189 (308)
T ss_dssp             TTCHHHHHHHHHHHHTSSSS-CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcccc-CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHHH
Confidence            99999999999999886433 333 7888888888899999999999999876543 4455544444332 369999999


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE-REI--PGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      .+|+++++..|.+..+|..++..+...|++++|+.+|+++++.. .+|  ....|..++..+.+.|+.++|..+++++++
T Consensus       190 ~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~  269 (308)
T 2ond_A          190 KIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  269 (308)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            99999998888888999999999999999999999999999862 243  467888888888999999999999999999


Q ss_pred             CCCC
Q 045674          630 VGYD  633 (650)
Q Consensus       630 ~~~~  633 (650)
                      ..+.
T Consensus       270 ~~p~  273 (308)
T 2ond_A          270 AFRE  273 (308)
T ss_dssp             HTTT
T ss_pred             Hccc
Confidence            8776

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.66  E-value=3.3e-14  Score=125.24  Aligned_cols=168  Identities=15%  Similarity=0.153  Sum_probs=152.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      +..+|..++..|...|++++|++.|++.++.. |.+...+..++.+|.+.|++++|...+.......+. +...+..++.
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD-PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            56788899999999999999999999999986 778899999999999999999999999999887554 7778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      .+...++++.|...+.++.+..+. +...+..++.++...|++++|++.|+++++.+|.+..++..++.++...|++++|
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A  160 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA  160 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence            899999999999999999986554 7888999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHcC
Q 045674          586 CKLADGIVDRE  596 (650)
Q Consensus       586 ~~~~~~~~~~~  596 (650)
                      ++.|+++++.+
T Consensus       161 ~~~~~~al~~~  171 (184)
T 3vtx_A          161 VKYFKKALEKE  171 (184)
T ss_dssp             HHHHHHHHHTT
T ss_pred             HHHHHHHHhCC
Confidence            99999999864

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.66  E-value=4.4e-15  Score=149.35  Aligned_cols=301  Identities=17%  Similarity=0.126  Sum_probs=186.6

Q ss_pred             CCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-
Q 045674          320 IPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMKYE----GVEP-  390 (650)
Q Consensus       320 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-  390 (650)
                      .....+......+...|++++|...|+++++.... +    ...+..++..|...|++++|...++++...    +..| 
T Consensus         7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            34555667777888888888888888888876322 2    346777778888888888888888876432    1111 


Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCC--------------------HHH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVA-VN----AMFYSSLIDGLGKAGR--------------------VDE  445 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~--------------------~~~  445 (650)
                      ....+..+...+...|++++|...++++.+.... .+    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            1345666777777888888888888777664211 11    3356667777777777                    777


Q ss_pred             HHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 045674          446 AEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEE  515 (650)
Q Consensus       446 A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~  515 (650)
                      |...+++....    + .+....++..++.+|...|++++|...+++..+.... ++    ..++..++..+...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            77777766542    1 0112345666777777777777777777776543111 12    2256666677777777777


Q ss_pred             HHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHHcCCHHH
Q 045674          516 ALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITCLCKTGRIKE  584 (650)
Q Consensus       516 A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~  584 (650)
                      |...++++.+.... .+    ..++..++..+...|++++|..+++++.+....      ...++..++.++...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            77777776642111 11    345566677777777777777777776643211      24566667777777777777


Q ss_pred             HHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHH
Q 045674          585 ACKLADGIVDREREIP-----GKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       585 A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      |.+.++++++......     ..++..++.++...|+...+.
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~  367 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTN  367 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC-
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHH
Confidence            7777777776541112     123444555555555544433

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.65  E-value=3.5e-16  Score=163.21  Aligned_cols=117  Identities=9%  Similarity=0.065  Sum_probs=76.0

Q ss_pred             hhhHHHHHHHHHHcCChhHHHHHHHHHHh---CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          252 VVTYNTMIKGYCKVGKTQKAMEKFRAMEA---RNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLV  328 (650)
Q Consensus       252 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l  328 (650)
                      ..+||+||++||+.|+.++|.++|++|.+   .|+.||..|||+||.+|++.|++++|.++|++|.+.|+.||..+|+++
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            44666666666666666666666665543   356666666666666666666666666666666666666666666666


Q ss_pred             HHHHHhcCCh-HHHHHHHHHHHHcCCCcCHHHHHHHHHHHH
Q 045674          329 IGGLCKVGKC-IEGHAIFESMIRRGCQPNVAIYTALIDSYA  368 (650)
Q Consensus       329 ~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~  368 (650)
                      |.++++.|+. ++|.++|++|.+.|+.||..+|+.++..+.
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~e  247 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEED  247 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhh
Confidence            6666666653 556666666666666666666666654433

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.65  E-value=5e-15  Score=148.95  Aligned_cols=306  Identities=14%  Similarity=0.040  Sum_probs=229.7

Q ss_pred             CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCChHHHHHHHHHHHHc----CCCc-
Q 045674          284 QPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIP---SHAYNLVIGGLCKVGKCIEGHAIFESMIRR----GCQP-  355 (650)
Q Consensus       284 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-  355 (650)
                      ......+......+...|++++|...|++..+......   ..++..+...+...|++++|...+++++..    +..+ 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            44566777888999999999999999999988743311   357888899999999999999999988654    2122 


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCC--------------------HHH
Q 045674          356 NVAIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPD----EVTYGVIISGLCKNER--------------------LEE  410 (650)
Q Consensus       356 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~--------------------~~~  410 (650)
                      ....+..++..|...|++++|+..+++...... ..+    ..++..+...|...|+                    +++
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~  165 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA  165 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence            245778889999999999999999998865310 012    3477888888999999                    999


Q ss_pred             HHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHH
Q 045674          411 AMQYFEFCRAN----GVA-VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-PRD----SYCYNVLIDALAKCGKLDE  480 (650)
Q Consensus       411 a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~  480 (650)
                      |...+++....    +.. ....++..++..+...|++++|...++++.+... .++    ..++..++.+|...|++++
T Consensus       166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  245 (406)
T 3sf4_A          166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET  245 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence            99999876543    111 1245678889999999999999999999886410 122    2378889999999999999


Q ss_pred             HHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHH
Q 045674          481 ALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVAR  550 (650)
Q Consensus       481 A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~  550 (650)
                      |...+++..+.... .+    ..++..++..+...|++++|...++++.+.... .+    ..++..++.++...|++++
T Consensus       246 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~  325 (406)
T 3sf4_A          246 ASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQ  325 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHH
Confidence            99999998764211 11    567888899999999999999999998853111 12    4577889999999999999


Q ss_pred             HHHHHHHHhhCCC----C--cHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          551 ACKILDELAPKGI----I--PETAFEDMITCLCKTGRIKEACKLA  589 (650)
Q Consensus       551 A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~  589 (650)
                      |.++++++.+...    .  ...++..++.++...|+...+..-+
T Consensus       326 A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~  370 (406)
T 3sf4_A          326 AMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSYSTNNSI  370 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTSCC----
T ss_pred             HHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhHHHHHHH
Confidence            9999999875421    1  3456667777777777666444333

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.64  E-value=7.7e-15  Score=143.30  Aligned_cols=268  Identities=16%  Similarity=0.114  Sum_probs=158.7

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----C-CCCCHHHHHHHH
Q 045674          364 IDSYAKLGSMNEAINIFERMKYEGVEPD----EVTYGVIISGLCKNERLEEAMQYFEFCRAN----G-VAVNAMFYSSLI  434 (650)
Q Consensus       364 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~  434 (650)
                      +..+...|++++|+.+|+++.+.... +    ...+..+...+...|++++|...++++...    + ......++..+.
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~   90 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTE-DLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   90 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence            34444444445554444444433111 1    123444444444455555555544443221    1 001233445555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHHHHHHH
Q 045674          435 DGLGKAGRVDEAEELFEEMVEKGC-PRD----SYCYNVLIDALAKCGK--------------------LDEALALFKRME  489 (650)
Q Consensus       435 ~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~  489 (650)
                      ..+...|++++|...+++..+... ..+    ..++..++..|...|+                    +++|...+++..
T Consensus        91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~  170 (338)
T 3ro2_A           91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL  170 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence            566666666666666665544210 011    2355666666666666                    666766666554


Q ss_pred             Hc----CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          490 DE----GC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       490 ~~----~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      +.    +. ......+..++..+...|++++|...++++.+.... ++    ..++..++..+...|++++|.++++++.
T Consensus       171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al  250 (338)
T 3ro2_A          171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL  250 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            31    10 112345666777777888888888888777642110 11    2366777888888888888888888877


Q ss_pred             hCCCC------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          560 PKGII------PETAFEDMITCLCKTGRIKEACKLADGIVDRERE-I----PGKIRTALINALRKAGNADLAIKLMHSKI  628 (650)
Q Consensus       560 ~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  628 (650)
                      +..+.      ...++..++.++...|++++|.+.++++++.... .    ...++..++.+|...|++++|...+++++
T Consensus       251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~  330 (338)
T 3ro2_A          251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL  330 (338)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence            54222      2567788889999999999999999888764211 1    13467788889999999999999999988


Q ss_pred             HCCC
Q 045674          629 GVGY  632 (650)
Q Consensus       629 ~~~~  632 (650)
                      +...
T Consensus       331 ~~~~  334 (338)
T 3ro2_A          331 EISR  334 (338)
T ss_dssp             HC--
T ss_pred             HHHH
Confidence            8643

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.63  E-value=5.4e-15  Score=149.05  Aligned_cols=275  Identities=13%  Similarity=0.062  Sum_probs=165.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCChHHHHHHHHHHHHc----CC-CcCHHHH
Q 045674          290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPS----HAYNLVIGGLCKVGKCIEGHAIFESMIRR----GC-QPNVAIY  360 (650)
Q Consensus       290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~~~~~~~  360 (650)
                      +..+...+...|++++|...|+++.+.... +.    .++..+...+...|++++|...++++++.    +. ......+
T Consensus        51 l~~~g~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  129 (411)
T 4a1s_A           51 LALEGERLCNAGDCRAGVAFFQAAIQAGTE-DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSS  129 (411)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHHHHHHHHHHhccc-ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHH
Confidence            334445555666666666666665554322 21    24445555555555555555555554432    00 1112334


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHH
Q 045674          361 TALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANG-VAVNAMFYSSLIDGLGK  439 (650)
Q Consensus       361 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~  439 (650)
                      ..+...|...|++++|+..++++....                               ...+ ......++..+...|..
T Consensus       130 ~~l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~~l~~~~~~  178 (411)
T 4a1s_A          130 GNLGNTLKVMGRFDEAAICCERHLTLA-------------------------------RQLGDRLSEGRALYNLGNVYHA  178 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHhhchHHHHHHHHHHHHHHHH
Confidence            444444444555555554444443210                               0000 01123345555666666


Q ss_pred             cCC-----------------HHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC
Q 045674          440 AGR-----------------VDEAEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT  496 (650)
Q Consensus       440 ~~~-----------------~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~  496 (650)
                      .|+                 +++|++.+++..+.    + .+....++..++..|...|++++|+..+++..+.... .+
T Consensus       179 ~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  258 (411)
T 4a1s_A          179 KGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGD  258 (411)
T ss_dssp             HHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCC
Confidence            666                 66666666655442    1 0112346677778888888888888888877653111 11


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC---
Q 045674          497 ----VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-----PTAASFRALSIGLCLSGKVARACKILDELAPKGII---  564 (650)
Q Consensus       497 ----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-----p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---  564 (650)
                          ...+..++..|...|++++|...++++.+....     ....++..++.++...|++++|..+++++.+....   
T Consensus       259 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~  338 (411)
T 4a1s_A          259 RAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGD  338 (411)
T ss_dssp             HHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC
T ss_pred             cHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCC
Confidence                236777888888899999999988887753111     11456778888999999999999999988764222   


Q ss_pred             ---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          565 ---PETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       565 ---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                         ...++..++.++...|++++|.++++++++..
T Consensus       339 ~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  373 (411)
T 4a1s_A          339 RIGEARACWSLGNAHSAIGGHERALKYAEQHLQLA  373 (411)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHH
Confidence               34578889999999999999999999998763

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.62  E-value=9.7e-16  Score=159.90  Aligned_cols=118  Identities=11%  Similarity=0.157  Sum_probs=88.1

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRA---NGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVL  468 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l  468 (650)
                      ..||+++|++||+.|++++|.++|+.|.+   .|+.||..+|+.||.+||+.|++++|.++|++|.+.|+.||..+|+.+
T Consensus       127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL  206 (1134)
T 3spa_A          127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA  206 (1134)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            45777777777777777777777766653   367777777777777777777777777777777777777777777777


Q ss_pred             HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          469 IDALAKCGK-LDEALALFKRMEDEGCDQTVYTYTILINGMFK  509 (650)
Q Consensus       469 ~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  509 (650)
                      +.++++.|+ .++|.++|++|.+.|+.||..+|+.++.+..+
T Consensus       207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR  248 (1134)
T 3spa_A          207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDR  248 (1134)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHH
T ss_pred             HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhH
Confidence            777777776 46777777777777777777777777654433

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.62  E-value=7e-14  Score=139.23  Aligned_cols=231  Identities=10%  Similarity=0.027  Sum_probs=160.1

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--C----CCCHHHHH
Q 045674          398 IISGLCKNERLEEAMQYFEFCRAN----GVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--C----PRDSYCYN  466 (650)
Q Consensus       398 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~----~~~~~~~~  466 (650)
                      ....+...|++++|+..++++.+.    +..+ ...++..++..|...|++++|...+++..+..  .    +....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            444556677777777777766553    1111 23556677777777777777777777776531  1    11234677


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CC-CCCHHHHH
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEEALKLWDMMIDK----GI-TPTAASFR  536 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~-~p~~~~~~  536 (650)
                      .++.+|...|++++|+..+++..+.... ++    ..++..++.+|...|++++|+..++++.+.    +. .....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            7788888888888888888877653111 11    246777888888889999998888888761    22 22456778


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCC-----CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGI-----IPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALI  608 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~  608 (650)
                      .++.++...|++++|..+++++.+...     .....+..++.++...|+   +++|+.++++..  ..+....++..++
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la  346 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM--LYADLEDFAIDVA  346 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc--CHHHHHHHHHHHH
Confidence            888888899999999999988876421     122335678888888888   778888887762  1123345677889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 045674          609 NALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ..|...|++++|...++++++.
T Consensus       347 ~~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          347 KYYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
Confidence            9999999999999999998874

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.61  E-value=6e-14  Score=128.44  Aligned_cols=207  Identities=10%  Similarity=-0.013  Sum_probs=165.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      +...+...+..+...|++++|+..|+++++...+++...+..++.++...|++++|+..+++..+..+. +...|..++.
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence            567888889999999999999999999998763278888888999999999999999999999987554 6778888999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTA-------ASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCL  576 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~  576 (650)
                      ++...|++++|+..++++++..+. +.       ..+..++..+...|++++|++.++++++.+|.  +..++..++.++
T Consensus        85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~  163 (228)
T 4i17_A           85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVLF  163 (228)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHHH
T ss_pred             HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHHH
Confidence            999999999999999999986544 45       45788888899999999999999999998888  788999999998


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      ...|     ..+++++.... ..+...+...  .....+.+++|+..++++++..+........+.
T Consensus       164 ~~~~-----~~~~~~a~~~~-~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~  221 (228)
T 4i17_A          164 YNNG-----ADVLRKATPLA-SSNKEKYASE--KAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQD  221 (228)
T ss_dssp             HHHH-----HHHHHHHGGGT-TTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHHH-----HHHHHHHHhcc-cCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHH
Confidence            7655     44456665554 3344444333  345567789999999999999888665555443

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.61  E-value=3.1e-14  Score=150.82  Aligned_cols=169  Identities=15%  Similarity=0.084  Sum_probs=130.4

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL  538 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  538 (650)
                      |.+...++.|+.+|.+.|++++|++.|++.++..+. +..+|..++.+|.+.|++++|+..|+++++..+. +...+..+
T Consensus         6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nL   83 (723)
T 4gyw_A            6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNM   83 (723)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence            445667777777788888888888888877776544 6777777777788888888888888887776544 56777778


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNAD  618 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  618 (650)
                      +.++...|++++|++.|+++++.+|.+..++..++.+|...|++++|++.|+++++.+ +.+..++..++.+|...|+++
T Consensus        84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~  162 (723)
T 4gyw_A           84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWT  162 (723)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCT
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHH
Confidence            8888888888888888888888777777888888888888888888888888888776 667777788888888888888


Q ss_pred             HHHHHHHHHHHC
Q 045674          619 LAIKLMHSKIGV  630 (650)
Q Consensus       619 ~A~~~~~~~~~~  630 (650)
                      +|.+.++++++.
T Consensus       163 ~A~~~~~kal~l  174 (723)
T 4gyw_A          163 DYDERMKKLVSI  174 (723)
T ss_dssp             THHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            888887777764

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.60  E-value=4.4e-14  Score=144.14  Aligned_cols=215  Identities=11%  Similarity=-0.016  Sum_probs=182.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          373 MNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERL-EEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFE  451 (650)
Q Consensus       373 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~  451 (650)
                      +++++..+++..... ..+...+..+...+...|++ ++|++.|+++.+..+. +...|..++.+|...|++++|.+.|+
T Consensus        84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~  161 (474)
T 4abn_A           84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFS  161 (474)
T ss_dssp             HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            566666776665442 23677788888888888999 9999999888887655 67888889999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc--------CCHH
Q 045674          452 EMVEKGCPRDSYCYNVLIDALAKC---------GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKE--------HRNE  514 (650)
Q Consensus       452 ~~~~~~~~~~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~  514 (650)
                      ++++..  |+...+..++.+|...         |++++|+..|+++.+..+. +...|..++.+|...        |+++
T Consensus       162 ~al~~~--p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~  238 (474)
T 4abn_A          162 GALTHC--KNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQ  238 (474)
T ss_dssp             HHHTTC--CCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred             HHHhhC--CCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHH
Confidence            998874  6678888899999998         9999999999999887654 788899999999888        9999


Q ss_pred             HHHHHHHHHHHCCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          515 EALKLWDMMIDKGIT--PTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      +|+..|+++++..+.  .+...+..++.+|...|++++|.+.|+++.+..|.+..++..++.++...|++++|++.+.++
T Consensus       239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            999999999986441  378899999999999999999999999999999999999999999999999999998876544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.60  E-value=1.9e-13  Score=136.12  Aligned_cols=232  Identities=9%  Similarity=-0.042  Sum_probs=173.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------CCHHHHH
Q 045674          363 LIDSYAKLGSMNEAINIFERMKYE----GVEP-DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVA------VNAMFYS  431 (650)
Q Consensus       363 l~~~~~~~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~~~~~~  431 (650)
                      .+..+...|++++|+..|++....    +-.+ ...++..+...|...|++++|+..+++..+....      ....++.
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            566677888888988888888653    1111 2356777888888889999998888877653111      1235678


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHH
Q 045674          432 SLIDGLGKAGRVDEAEELFEEMVEKGC-PRD----SYCYNVLIDALAKCGKLDEALALFKRMEDE----GC-DQTVYTYT  501 (650)
Q Consensus       432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~  501 (650)
                      .++.+|...|++++|...++++++... ..+    ..++..++.+|...|++++|+..+++..+.    +. .....++.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  268 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF  268 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence            888999999999999999998876410 011    247888999999999999999999998772    22 33567788


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDKG----ITPTAASFRALSIGLCLSGK---VARACKILDELAPKGIIPETAFEDMIT  574 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~~----~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~  574 (650)
                      .++.++...|++++|...++++.+..    -......+..++..+...|+   +++|+.++++.. ..+....++..++.
T Consensus       269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~la~  347 (383)
T 3ulq_A          269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKM-LYADLEDFAIDVAK  347 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCc-CHHHHHHHHHHHHH
Confidence            89999999999999999999987531    11122335678888888998   888888887772 11224567888999


Q ss_pred             HHHHcCCHHHHHHHHHHHHHc
Q 045674          575 CLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       575 ~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++...|++++|.+.++++++.
T Consensus       348 ~y~~~g~~~~A~~~~~~al~~  368 (383)
T 3ulq_A          348 YYHERKNFQKASAYFLKVEQV  368 (383)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHH
Confidence            999999999999999999865

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.59  E-value=9.9e-14  Score=135.36  Aligned_cols=203  Identities=14%  Similarity=0.046  Sum_probs=134.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----CCHHHHHHHHHHHHHcCC--------------------HHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVA-----VNAMFYSSLIDGLGKAGR--------------------VDEAEE  448 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~--------------------~~~A~~  448 (650)
                      .+..+...+...|++++|...+++..+....     ....++..+...+...|+                    +++|..
T Consensus        85 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~  164 (338)
T 3ro2_A           85 ASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVD  164 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHH
Confidence            3444444455555555555555444322100     012345555666666666                    666666


Q ss_pred             HHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCCHHHHHH
Q 045674          449 LFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-Q----TVYTYTILINGMFKEHRNEEALK  518 (650)
Q Consensus       449 ~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~  518 (650)
                      .+++....    + .+....++..++..|...|++++|...+++..+.... +    ...++..++..+...|++++|..
T Consensus       165 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  244 (338)
T 3ro2_A          165 LYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASE  244 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            66665432    1 0112346777788888888888888888877653110 1    13367778888889999999999


Q ss_pred             HHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHHcCCHHHHHH
Q 045674          519 LWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       519 ~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      .++++.+.... .+    ..++..++..+...|++++|..+++++.+..+.      ...++..++.++...|++++|.+
T Consensus       245 ~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~  324 (338)
T 3ro2_A          245 YYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMH  324 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHH
Confidence            99888753111 11    456778889999999999999999998764322      24578889999999999999999


Q ss_pred             HHHHHHHcC
Q 045674          588 LADGIVDRE  596 (650)
Q Consensus       588 ~~~~~~~~~  596 (650)
                      .++++++..
T Consensus       325 ~~~~a~~~~  333 (338)
T 3ro2_A          325 FAEKHLEIS  333 (338)
T ss_dssp             HHHHHHHC-
T ss_pred             HHHHHHHHH
Confidence            999998763

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.58  E-value=1.9e-12  Score=124.38  Aligned_cols=218  Identities=9%  Similarity=0.072  Sum_probs=161.3

Q ss_pred             HHHHHHHHHHHHCCCCCCHHhHHHHHHHHH-------hcCCH-------HHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 045674          374 NEAINIFERMKYEGVEPDEVTYGVIISGLC-------KNERL-------EEAMQYFEFCRA-NGVAVNAMFYSSLIDGLG  438 (650)
Q Consensus       374 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~-------~~g~~-------~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~  438 (650)
                      ++|+.+|+++.... .-+...|..++..+.       +.|++       ++|..+|++..+ ..+. +...|..++..+.
T Consensus        33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~  110 (308)
T 2ond_A           33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEE  110 (308)
T ss_dssp             HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence            56666676666532 124555655555544       34665       888888888887 3443 6677888888888


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-hcCCHHHH
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSY-CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF-KEHRNEEA  516 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~~~~~~A  516 (650)
                      ..|++++|..+|+++++.. +.+.. +|..++..+.+.|++++|..+|+++.+..+. +...|...+.... ..|++++|
T Consensus       111 ~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~a~~~~~~~~~~~~A  188 (308)
T 2ond_A          111 SRMKYEKVHSIYNRLLAIE-DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVA  188 (308)
T ss_dssp             HTTCHHHHHHHHHHHHTSS-SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHH
T ss_pred             hcCCHHHHHHHHHHHHhcc-ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHcCCHHHH
Confidence            8888888888888888853 33444 7888888888888999999999888876543 4455544433322 26899999


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC---CCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          517 LKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK---GII-PETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      ..+|+++++..+. +...+..++..+...|++++|..+|++++..   .+. ...+|..++..+...|+.++|..+++++
T Consensus       189 ~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a  267 (308)
T 2ond_A          189 FKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR  267 (308)
T ss_dssp             HHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999988876444 6778888888888889999999999999885   332 5678888888888899999999999998


Q ss_pred             HHcC
Q 045674          593 VDRE  596 (650)
Q Consensus       593 ~~~~  596 (650)
                      ++..
T Consensus       268 ~~~~  271 (308)
T 2ond_A          268 FTAF  271 (308)
T ss_dssp             HHHT
T ss_pred             HHHc
Confidence            8774

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.57  E-value=2.2e-13  Score=119.98  Aligned_cols=171  Identities=16%  Similarity=0.089  Sum_probs=139.5

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ...+..++..+...|++++|...++++.+..+. +...+..++..+...|++++|...++++.+..+. +...+..++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAF-DVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcc-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            345666777788888888888888887765433 6777888888888888888888888888876433 67778888888


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      +...|++++|.++++++.+..+.+..++..++.++...|++++|.++++++++.. +.+..++..++.++...|++++|.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence            8888999999999998888877788888889999999999999999999988876 667888888999999999999999


Q ss_pred             HHHHHHHHCCCCCh
Q 045674          622 KLMHSKIGVGYDRM  635 (650)
Q Consensus       622 ~~~~~~~~~~~~~~  635 (650)
                      ..++++++..+...
T Consensus       165 ~~~~~~~~~~~~~~  178 (186)
T 3as5_A          165 PHFKKANELDEGAS  178 (186)
T ss_dssp             HHHHHHHHHHHCCC
T ss_pred             HHHHHHHHcCCCch
Confidence            99999888765543

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.56  E-value=8e-13  Score=120.90  Aligned_cols=209  Identities=11%  Similarity=0.002  Sum_probs=170.0

Q ss_pred             CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          390 PDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLI  469 (650)
Q Consensus       390 p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~  469 (650)
                      .|...+......+...|++++|+..|+.+.+..+.++...+..++.++...|++++|+..+++.++.. +.+...+..++
T Consensus         5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~   83 (228)
T 4i17_A            5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS   83 (228)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence            35678888899999999999999999999988764577888889999999999999999999999975 66788999999


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHH
Q 045674          470 DALAKCGKLDEALALFKRMEDEGCDQTV-------YTYTILINGMFKEHRNEEALKLWDMMIDKGITPT---AASFRALS  539 (650)
Q Consensus       470 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---~~~~~~l~  539 (650)
                      .+|...|++++|+..+++..+..+. +.       ..|..++..+...|++++|+..++++++.  .|+   ...+..++
T Consensus        84 ~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~  160 (228)
T 4i17_A           84 AAYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLG  160 (228)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHH
T ss_pred             HHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHH
Confidence            9999999999999999999987544 55       56888888999999999999999999985  444   46777888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      .++...     +..+++++...+..+...+...  .....+.+++|+..++++++.. |.+..+...+...
T Consensus       161 ~~~~~~-----~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~~~~A~~~~~~a~~l~-p~~~~~~~~l~~i  223 (228)
T 4i17_A          161 VLFYNN-----GADVLRKATPLASSNKEKYASE--KAKADAAFKKAVDYLGEAVTLS-PNRTEIKQMQDQV  223 (228)
T ss_dssp             HHHHHH-----HHHHHHHHGGGTTTCHHHHHHH--HHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HHHHHH-----HHHHHHHHHhcccCCHHHHHHH--HHHHHHHHHHHHHHHHHHhhcC-CCCHHHHHHHHHH
Confidence            887654     4455677776655554444433  3445677999999999999986 6677766666544

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.56  E-value=1e-13  Score=133.74  Aligned_cols=239  Identities=15%  Similarity=0.052  Sum_probs=174.1

Q ss_pred             HHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-
Q 045674          392 EVTYGVIISGLCKNERLEEAMQYFEFCRAN-------GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK------G-  457 (650)
Q Consensus       392 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-  457 (650)
                      ..++..+...+...|++++|..+++++.+.       ........+..++..|...|++++|...+++++..      + 
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  106 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD  106 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence            567888888999999999999999988773       22335667888999999999999999999998874      1 


Q ss_pred             CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----
Q 045674          458 CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE------GC-DQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----  526 (650)
Q Consensus       458 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----  526 (650)
                      .+....++..++..|...|++++|...++++.+.      +. ......+..++..+...|++++|+.+++++.+.    
T Consensus       107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~  186 (311)
T 3nf1_A          107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK  186 (311)
T ss_dssp             CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred             ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence            1334567888999999999999999999998764      11 224556788888999999999999999998864    


Q ss_pred             --CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---------CCc------HHHHHHHHHHHHHcCCHHHHHHH
Q 045674          527 --GITP-TAASFRALSIGLCLSGKVARACKILDELAPKG---------IIP------ETAFEDMITCLCKTGRIKEACKL  588 (650)
Q Consensus       527 --~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------~~~------~~~~~~l~~~~~~~g~~~~A~~~  588 (650)
                        +..| ...++..++.++...|++++|.++++++.+..         +..      ...+..++..+...+.+.+|...
T Consensus       187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~  266 (311)
T 3nf1_A          187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW  266 (311)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred             hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence              1122 34467888999999999999999999988631         111      22333344445556667777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          589 ADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       589 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  631 (650)
                      ++++.... +....++..++.+|.+.|++++|++.++++++..
T Consensus       267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~  308 (311)
T 3nf1_A          267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSR  308 (311)
T ss_dssp             -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred             HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHh
Confidence            88777654 5567788999999999999999999999998753

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.55  E-value=8e-13  Score=131.24  Aligned_cols=230  Identities=11%  Similarity=0.033  Sum_probs=152.7

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCC-C----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CC----CCHHHHH
Q 045674          398 IISGLCKNERLEEAMQYFEFCRANGVA-V----NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--CP----RDSYCYN  466 (650)
Q Consensus       398 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~----~~~~~~~  466 (650)
                      ....+...|++++|+..|+++.+.... +    ...++..++.+|...|+++.|...+++..+..  ..    ....+++
T Consensus       107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  186 (378)
T 3q15_A          107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF  186 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred             HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence            334455667777777777666543111 1    23456667777777777777777777766531  01    1234567


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHHHHH
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDE----GCD-QTVYTYTILINGMFKEHRNEEALKLWDMMID-----KGITPTAASFR  536 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~p~~~~~~  536 (650)
                      .++.+|...|++++|++.+++..+.    +.. ....++..++.+|...|++++|...++++++     ..+. ...++.
T Consensus       187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~~~  265 (378)
T 3q15_A          187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKVLF  265 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHHHH
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHHHH
Confidence            7777788888888888877776552    111 1234667777888888888888888888876     4333 366777


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCC-----cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGII-----PETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALI  608 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~  608 (650)
                      .++.++.+.|++++|..+++++.+....     ....+..+...+...|+   +.+|+.++++..  ..+.....+..++
T Consensus       266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~--~~~~~~~~~~~la  343 (378)
T 3q15_A          266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN--LHAYIEACARSAA  343 (378)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC--ChhHHHHHHHHHH
Confidence            8888888888888888888888764221     23445666777777777   777777777632  1122344666788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 045674          609 NALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ..|...|++++|...++++++.
T Consensus       344 ~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          344 AVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHH
Confidence            8888889999998888888763

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.54  E-value=5.9e-14  Score=135.37  Aligned_cols=168  Identities=16%  Similarity=0.125  Sum_probs=90.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC
Q 045674          428 MFYSSLIDGLGKAGRVDEAEELFEEMVEK------G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE------GCD  494 (650)
Q Consensus       428 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~  494 (650)
                      ..+..++..+...|++++|...++++.+.      + .+.....+..++.+|...|++++|+..++++.+.      +..
T Consensus       112 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~  191 (311)
T 3nf1_A          112 ATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDD  191 (311)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTC
T ss_pred             HHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence            34445555555555555555555555442      1 1122344555666666666666666666665543      111


Q ss_pred             -CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          495 -QTVYTYTILINGMFKEHRNEEALKLWDMMIDK-------GITPT-------AASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       495 -~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                       ....++..++.++...|++++|..+++++.+.       ...+.       ...+..++..+...+.+.+|...+..+.
T Consensus       192 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~  271 (311)
T 3nf1_A          192 PNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACK  271 (311)
T ss_dssp             HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-------
T ss_pred             HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcC
Confidence             12345556666666666666666666666542       01111       1112223333445566777777788777


Q ss_pred             hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ...+....++..++.++...|++++|.++++++++.
T Consensus       272 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          272 VDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             --CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            766667888999999999999999999999998865

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.53  E-value=6.9e-12  Score=124.31  Aligned_cols=301  Identities=13%  Similarity=0.053  Sum_probs=189.3

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCH----HhH
Q 045674          325 YNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNV----AIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPDE----VTY  395 (650)
Q Consensus       325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~~----~~~  395 (650)
                      .......+...|++++|...+++.+......+.    ..++.+...+...|++++|...+++...... ..+.    .++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            344555667788888888888888775322222    2455667777888888888888887764210 1121    234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 045674          396 GVIISGLCKNERLEEAMQYFEFCRAN----GVA--V-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCP----RDSYC  464 (650)
Q Consensus       396 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~----~~~~~  464 (650)
                      ..+...+...|++++|...+++..+.    +..  + ....+..+...+...|++++|...+++.......    ....+
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            55666777888888888888776543    111  1 2345566777788888888888888887764311    12355


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQT--VYTYT----ILINGMFKEHRNEEALKLWDMMIDKGITP---TAASF  535 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~  535 (650)
                      +..+...+...|++++|...+++.......++  .....    ..+..+...|++++|...+++.......+   ....+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            67777778888888888888887765321111  11111    22334667888888888887776543221   12345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCC----C--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          536 RALSIGLCLSGKVARACKILDELAPKGI----I--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN  609 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  609 (650)
                      ..++..+...|++++|...++++.....    .  ...++..++.++...|++++|...+++++... ++     .....
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~-~~-----~g~~~  330 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLA-NR-----TGFIS  330 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HH-----HCCCH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHh-cc-----ccHHH
Confidence            6677777788888888888887764311    1  12356667778888888888888888887542 11     11223


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          610 ALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       610 ~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+...|  +....+++++++.++.
T Consensus       331 ~~~~~g--~~~~~ll~~~~~~~~~  352 (373)
T 1hz4_A          331 HFVIEG--EAMAQQLRQLIQLNTL  352 (373)
T ss_dssp             HHHTTH--HHHHHHHHHHHHTTCS
T ss_pred             HHHHcc--HHHHHHHHHHHhCCCC
Confidence            344444  6677777777776664

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.53  E-value=4.8e-13  Score=141.76  Aligned_cols=167  Identities=19%  Similarity=0.128  Sum_probs=150.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      +...|+.++.+|.+.|++++|++.|+++++.. +.+...++.++.+|.+.|++++|++.|+++++..+. +...|..++.
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~-P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            46778889999999999999999999999875 677889999999999999999999999999987654 7888999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      ++...|++++|++.|+++++..+. +...+..++.+|...|++++|++.|+++++..|.+..++..++.++...|++++|
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~A  164 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTDY  164 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTTH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHHH
Confidence            999999999999999999987555 7788999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHHc
Q 045674          586 CKLADGIVDR  595 (650)
Q Consensus       586 ~~~~~~~~~~  595 (650)
                      .+.++++++.
T Consensus       165 ~~~~~kal~l  174 (723)
T 4gyw_A          165 DERMKKLVSI  174 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            9999988764

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.52  E-value=5.5e-12  Score=125.14  Aligned_cols=233  Identities=9%  Similarity=-0.056  Sum_probs=170.7

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-----C-CCHHH
Q 045674          361 TALIDSYAKLGSMNEAINIFERMKYEGV-EPD----EVTYGVIISGLCKNERLEEAMQYFEFCRANGV-----A-VNAMF  429 (650)
Q Consensus       361 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~-~~~~~  429 (650)
                      ...+..+...|++++|+..|++...... .++    ..++..+...|...|+++.|...+++..+...     . ....+
T Consensus       105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~  184 (378)
T 3q15_A          105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQS  184 (378)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHH
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHH
Confidence            3455567788889999988888765311 122    34677788888888999999888887764311     1 12456


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 045674          430 YSSLIDGLGKAGRVDEAEELFEEMVEK----GCP-RDSYCYNVLIDALAKCGKLDEALALFKRMED-----EGCDQTVYT  499 (650)
Q Consensus       430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  499 (650)
                      +..++.+|...|++++|.+.+++.++.    +.+ ....++..++.+|...|++++|+..+++..+     ..+. ...+
T Consensus       185 ~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~~~~  263 (378)
T 3q15_A          185 LFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-LPKV  263 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-HHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-HHHH
Confidence            778888899999999999999888763    101 1235678889999999999999999998877     4333 3778


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CC-CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcHHHHHHH
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGI---TP-TAASFRALSIGLCLSGK---VARACKILDELAPKGIIPETAFEDM  572 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p-~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l  572 (650)
                      +..++.++...|++++|...++++.+...   .+ ....+..+...+...|+   +.+|+.++++.. ..+.....+..+
T Consensus       264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~-~~~~~~~~~~~l  342 (378)
T 3q15_A          264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKN-LHAYIEACARSA  342 (378)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCC-ChhHHHHHHHHH
Confidence            88899999999999999999999886321   12 23345666666777788   888888887732 111245677889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc
Q 045674          573 ITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       573 ~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      +.+|...|++++|.+.++++++.
T Consensus       343 a~~y~~~g~~~~A~~~~~~al~~  365 (378)
T 3q15_A          343 AAVFESSCHFEQAAAFYRKVLKA  365 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHH
Confidence            99999999999999999998754

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.49  E-value=3.5e-12  Score=112.24  Aligned_cols=167  Identities=18%  Similarity=0.104  Sum_probs=135.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING  506 (650)
Q Consensus       427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  506 (650)
                      ...+..++..+...|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+..+. +...+..++..
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            3456667777788888888888888777653 557777888888888888888888888888776433 67778888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      +...|++++|...++++.+..+. +...+..++.++...|++++|.++++++.+..+.+..++..++.++...|++++|.
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~  164 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL  164 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence            88888888888888888876443 67788888888888999999999999988887778888889999999999999999


Q ss_pred             HHHHHHHHcC
Q 045674          587 KLADGIVDRE  596 (650)
Q Consensus       587 ~~~~~~~~~~  596 (650)
                      +.++++++..
T Consensus       165 ~~~~~~~~~~  174 (186)
T 3as5_A          165 PHFKKANELD  174 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHcC
Confidence            9999888764

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.48  E-value=1e-11  Score=123.03  Aligned_cols=300  Identities=13%  Similarity=-0.003  Sum_probs=195.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH----HHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHH
Q 045674          290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSH----AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQ-PN----VAIY  360 (650)
Q Consensus       290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~  360 (650)
                      .......+...|++++|...+++........+..    ++..+...+...|++++|...+++....... .+    ..++
T Consensus        17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   96 (373)
T 1hz4_A           17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   96 (373)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            3444556677888999988888877754332222    4556677788888999888888887764111 12    2235


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----CCC--CC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC----CCHHH
Q 045674          361 TALIDSYAKLGSMNEAINIFERMKYE----GVE--PD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVA----VNAMF  429 (650)
Q Consensus       361 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~--p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~  429 (650)
                      ..+...+...|++++|...+++....    +..  |. ...+..+...+...|++++|...+++.......    .....
T Consensus        97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  176 (373)
T 1hz4_A           97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  176 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence            56777888889999998888887642    211  22 345566777788889999998888887654322    12356


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-C-HHHHH----HHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHH
Q 045674          430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPR-D-SYCYN----VLIDALAKCGKLDEALALFKRMEDEGCDQ---TVYTY  500 (650)
Q Consensus       430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~-~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~  500 (650)
                      +..+...+...|++++|...+++.......+ . .....    ..+..+...|++++|...+++.......+   ....+
T Consensus       177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  256 (373)
T 1hz4_A          177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  256 (373)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence            6777888888899999988888877641111 1 11111    23344778888988888888876643221   13345


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          501 TILINGMFKEHRNEEALKLWDMMIDK----GITPTA-ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       501 ~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      ..+...+...|++++|...++++...    +..++. ..+..++.++...|+.++|...++++......     ......
T Consensus       257 ~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~~~~-----~g~~~~  331 (373)
T 1hz4_A          257 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANR-----TGFISH  331 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHH-----HCCCHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhcc-----ccHHHH
Confidence            66777888888999988888887642    211122 25566777788888999998888888754111     112233


Q ss_pred             HHHcCCHHHHHHHHHHHHHcC
Q 045674          576 LCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +...|  +....+++.+....
T Consensus       332 ~~~~g--~~~~~ll~~~~~~~  350 (373)
T 1hz4_A          332 FVIEG--EAMAQQLRQLIQLN  350 (373)
T ss_dssp             HHTTH--HHHHHHHHHHHHTT
T ss_pred             HHHcc--HHHHHHHHHHHhCC
Confidence            44444  56666777776654

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.45  E-value=1.2e-12  Score=124.05  Aligned_cols=228  Identities=15%  Similarity=0.054  Sum_probs=162.0

Q ss_pred             HHhcCCHHHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHHH
Q 045674          402 LCKNERLEEAMQYFEFCRAN-------GVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK------G-CPRDSYCYNV  467 (650)
Q Consensus       402 ~~~~g~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~  467 (650)
                      ....|++++|+..+++..+.       +......++..++..|...|++++|+..++++++.      + .+....++..
T Consensus        11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~   90 (283)
T 3edt_B           11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN   90 (283)
T ss_dssp             --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred             cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence            34567777787777766542       22234667888999999999999999999998864      1 1334567888


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc-----CC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CC-CC-CHH
Q 045674          468 LIDALAKCGKLDEALALFKRMEDE-----GC--DQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-----GI-TP-TAA  533 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~-----~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-----~~-~p-~~~  533 (650)
                      ++.+|...|++++|+..++++.+.     +.  .....++..++..+...|++++|..+++++.+.     +. .| ...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            999999999999999999998764     11  224667888889999999999999999998864     11 22 345


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhC---------CCCcHHHHHHHHHHHHHcCC------HHHHHHHHHHHHHcCCC
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPK---------GIIPETAFEDMITCLCKTGR------IKEACKLADGIVDRERE  598 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~  598 (650)
                      ++..++.++...|++++|..+++++.+.         .+.....+..+.......+.      +.++...++...... +
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~  249 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS-P  249 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC-H
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC-H
Confidence            7788899999999999999999998864         22244555555555554443      333333333332211 2


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          599 IPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       599 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ....++..++.+|...|++++|..+++++++.
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34567888999999999999999999999874

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.42  E-value=5.2e-12  Score=120.08  Aligned_cols=176  Identities=11%  Similarity=0.046  Sum_probs=79.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045674          372 SMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN----GVAV-NAMFYSSLIDGLGKAGRVDEA  446 (650)
Q Consensus       372 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A  446 (650)
                      ++++|...|++.               ...|...|++++|...|.+....    +..+ ...+|..++.+|...|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            366666666655               22355566666666666655432    1111 134555566666666666666


Q ss_pred             HHHHHHHHHcCCC-CC----HHHHHHHHHHHHHc-CCHHHHHHHHHHHHHcCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 045674          447 EELFEEMVEKGCP-RD----SYCYNVLIDALAKC-GKLDEALALFKRMEDEGCDQ-T----VYTYTILINGMFKEHRNEE  515 (650)
Q Consensus       447 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~-~----~~~~~~l~~~~~~~~~~~~  515 (650)
                      +..+++.++.... .+    ..+++.++.+|... |++++|+..|++.++..... +    ..++..++..+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            6666655542100 01    22344444444443 55555555555444321100 0    1234444444444444444


Q ss_pred             HHHHHHHHHHCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 045674          516 ALKLWDMMIDKGITPTA------ASFRALSIGLCLSGKVARACKILDELAPKG  562 (650)
Q Consensus       516 A~~~~~~~~~~~~~p~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  562 (650)
                      |+..|+++.+..+....      ..+..++.++...|++++|...++++++..
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~  229 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED  229 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            44444444443222111      123334444444444444444444444433

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.42  E-value=1.2e-11  Score=115.61  Aligned_cols=100  Identities=14%  Similarity=0.066  Sum_probs=55.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-C-CHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-Q-TVYTY  500 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~-~~~~~  500 (650)
                      +...+..++..+.+.|++++|+..|+++++.. |.+   ...+..++.+|.+.|++++|+..|+++++..+. + ....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG-RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC-SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            34445555556666666666666666666543 333   455566666666666666666666666554321 1 13344


Q ss_pred             HHHHHHHHh--------cCCHHHHHHHHHHHHHC
Q 045674          501 TILINGMFK--------EHRNEEALKLWDMMIDK  526 (650)
Q Consensus       501 ~~l~~~~~~--------~~~~~~A~~~~~~~~~~  526 (650)
                      ..++.++..        .|++++|+..|+++++.
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~  126 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR  126 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence            455555555        56666666666666554

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.41  E-value=1.1e-10  Score=109.48  Aligned_cols=224  Identities=9%  Similarity=-0.004  Sum_probs=171.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH----HHc---C
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG--RVDEAEELFEEMVEKGCPRDSYCYNVLIDAL----AKC---G  476 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g  476 (650)
                      ...++|+..++.++..++. +..+|+.-..++...+  +++++++.++.++... |.+..+|+....++    ...   +
T Consensus        47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccC
Confidence            3346788888888877666 6667777777777777  8888888888888875 66777777766666    555   6


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------H
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNE--EALKLWDMMIDKGITPTAASFRALSIGLCLSGK------V  548 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------~  548 (650)
                      ++++++.+++++.+..++ +..+|+.-..++...|+++  +++++++++++.++. |...|..-..++...|+      +
T Consensus       125 ~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence            788888888888887655 7888887777777778777  888888888877666 77777777777777776      8


Q ss_pred             HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 045674          549 ARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE-ACKLADGIVDRE--REIPGKIRTALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       549 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      +++++++++++..+|.+..+|+.+..++.+.|+..+ +..+.+++.+.+  .+.++.++..++.+|.+.|+.++|++.++
T Consensus       203 ~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~  282 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYD  282 (306)
T ss_dssp             HHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH
Confidence            889999999988888889999888888888887444 556777666542  13467788888888888899999999999


Q ss_pred             HHHH-CCCC
Q 045674          626 SKIG-VGYD  633 (650)
Q Consensus       626 ~~~~-~~~~  633 (650)
                      .+.+ .++.
T Consensus       283 ~l~~~~Dpi  291 (306)
T 3dra_A          283 LLKSKYNPI  291 (306)
T ss_dssp             HHHHTTCGG
T ss_pred             HHHhccChH
Confidence            9886 3554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=99.40  E-value=1.7e-11  Score=114.60  Aligned_cols=208  Identities=11%  Similarity=-0.036  Sum_probs=141.2

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCCHHHH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN---AMFYSSLIDGLGKAGRVDEAEELFEEMVEKG--CPRDSYCY  465 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~  465 (650)
                      +...+......+.+.|++++|+..|+.+.+..+. +   ...+..++.+|...|++++|+..|+.+++..  .+.....+
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~   92 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE   92 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence            4566777777888888999999998888877554 3   5677778888888899999999988888863  11234567


Q ss_pred             HHHHHHHHH--------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 045674          466 NVLIDALAK--------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRA  537 (650)
Q Consensus       466 ~~l~~~~~~--------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~  537 (650)
                      ..++.++..        .|++++|+..|+++++..+. +......+...              ..+...    ....+..
T Consensus        93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~--------------~~~~~~----~~~~~~~  153 (261)
T 3qky_A           93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKI--------------RELRAK----LARKQYE  153 (261)
T ss_dssp             HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHH--------------HHHHHH----HHHHHHH
T ss_pred             HHHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHH--------------HHHHHH----HHHHHHH
Confidence            778888888        88888999888888876443 22222221111              111100    0122556


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCC---cHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCH---
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGII---PETAFEDMITCLCKT----------GRIKEACKLADGIVDREREIPG---  601 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~---  601 (650)
                      ++..|...|++++|+..|+++++..|.   ...++..++.++...          |++++|+..|+++++.. |.+.   
T Consensus       154 la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~  232 (261)
T 3qky_A          154 AARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIF-PDSPLLR  232 (261)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHC-TTCTHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHC-CCChHHH
Confidence            777788888888888888888877666   456777888888766          78888888888888764 4332   


Q ss_pred             HHHHHHHHHHHhcCCHHH
Q 045674          602 KIRTALINALRKAGNADL  619 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~  619 (650)
                      .+...+...+...|++++
T Consensus       233 ~a~~~l~~~~~~~~~~~~  250 (261)
T 3qky_A          233 TAEELYTRARQRLTELEG  250 (261)
T ss_dssp             HHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHhhh
Confidence            233444545555555444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.39  E-value=6.2e-11  Score=107.81  Aligned_cols=190  Identities=12%  Similarity=-0.026  Sum_probs=126.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTV--YTY  500 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~--~~~  500 (650)
                      +...+..++..+...|++++|+..|+++++.. |.+   ...+..++.+|.+.|++++|+..|+++++..+....  ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRY-PFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHH
Confidence            34455566777888888888888888888753 222   356777888888888888888888888776543211  244


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHH-----------
Q 045674          501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAF-----------  569 (650)
Q Consensus       501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------  569 (650)
                      ..++.++...+..     .+            ..+..+...+...|++++|...|+++++..|.+..++           
T Consensus        82 ~~~g~~~~~~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~  144 (225)
T 2yhc_A           82 YMRGLTNMALDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKD  144 (225)
T ss_dssp             HHHHHHHHHHHC-------------------------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhhhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHH
Confidence            4455555432210     00            0111222233345666666666666666666543222           


Q ss_pred             ------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          570 ------EDMITCLCKTGRIKEACKLADGIVDREREIPG---KIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       570 ------~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                            ..++..+...|++++|+..|+++++.. |.++   .++..++.+|.+.|++++|++.++++...++..
T Consensus       145 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~  217 (225)
T 2yhc_A          145 RLAKYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNT  217 (225)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCC
T ss_pred             HHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCc
Confidence                  457888999999999999999999875 4443   578889999999999999999999999987764

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.39  E-value=1.2e-11  Score=111.02  Aligned_cols=128  Identities=10%  Similarity=-0.080  Sum_probs=84.8

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC-
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR-  581 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-  581 (650)
                      ++.++...|++++|+..|+++++..+. +...+..++.++...|++++|...|+++++.+|.+..++..++.++...|+ 
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~  138 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQ  138 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHH
Confidence            666777777777777777777766444 666777777777777777777777777777777777777777777765553 


Q ss_pred             -HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          582 -IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       582 -~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                       .+.+...++++...  .|....+...+.++...|++++|+..|+++++..|.
T Consensus       139 ~~~~~~~~~~~~~~~--~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~  189 (208)
T 3urz_A          139 EKKKLETDYKKLSSP--TKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPS  189 (208)
T ss_dssp             HHHHHHHHHC---CC--CHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred             HHHHHHHHHHHHhCC--CchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence             34455555555421  222334455566667777777777777777777665

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.39  E-value=2.4e-11  Score=115.50  Aligned_cols=210  Identities=12%  Similarity=0.048  Sum_probs=134.9

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 045674          407 RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK----GCPR-DSYCYNVLIDALAKCGKLDEA  481 (650)
Q Consensus       407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A  481 (650)
                      ++++|...|+++               +..|...|++++|...|.+..+.    |.++ ...+|+.++.+|.+.|++++|
T Consensus        32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A   96 (292)
T 1qqe_A           32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA   96 (292)
T ss_dssp             HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence            477777777665               33466778888888777777653    2111 145677778888888888888


Q ss_pred             HHHHHHHHHcCCC-CC----HHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHH
Q 045674          482 LALFKRMEDEGCD-QT----VYTYTILINGMFKE-HRNEEALKLWDMMIDKGITP-T----AASFRALSIGLCLSGKVAR  550 (650)
Q Consensus       482 ~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~-~~~~~A~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~  550 (650)
                      +..+++.++.... .+    ..+++.++.+|... |++++|+..|+++++..... +    ..++..++..+...|++++
T Consensus        97 ~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~  176 (292)
T 1qqe_A           97 VDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIE  176 (292)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHH
Confidence            8877777653111 01    34677777777775 88888888888777532110 1    3456777777888888888


Q ss_pred             HHHHHHHHhhCCCCcH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHH--hcCC
Q 045674          551 ACKILDELAPKGIIPE-------TAFEDMITCLCKTGRIKEACKLADGIVDREREIPG-----KIRTALINALR--KAGN  616 (650)
Q Consensus       551 A~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-----~~~~~l~~~~~--~~g~  616 (650)
                      |+.+|+++.+..+.+.       ..+..++.++...|++++|+..++++++.. +...     ..+..++.++.  ..++
T Consensus       177 A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~l~~l~~~~~~~~~~~  255 (292)
T 1qqe_A          177 ASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSED-PNFADSRESNFLKSLIDAVNEGDSEQ  255 (292)
T ss_dssp             HHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------HHHHHHHHHHHHTTCTTT
T ss_pred             HHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCCCcHHHHHHHHHHHHHHcCCHHH
Confidence            8888888877665522       146677777888888888888888877653 2111     12334455553  3466


Q ss_pred             HHHHHHHHHHHHHCCC
Q 045674          617 ADLAIKLMHSKIGVGY  632 (650)
Q Consensus       617 ~~~A~~~~~~~~~~~~  632 (650)
                      +++|+..|+++++..+
T Consensus       256 ~~~A~~~~~~~~~l~~  271 (292)
T 1qqe_A          256 LSEHCKEFDNFMRLDK  271 (292)
T ss_dssp             HHHHHHHHTTSSCCCH
T ss_pred             HHHHHHHhccCCccHH
Confidence            7777777777666544

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.37  E-value=9e-12  Score=132.98  Aligned_cols=171  Identities=15%  Similarity=0.044  Sum_probs=83.2

Q ss_pred             HhcCCHHHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 045674          403 CKNERLEEAMQYFEFCR--------ANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK  474 (650)
Q Consensus       403 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  474 (650)
                      ...|++++|++.++++.        +..+. +...+..++.++...|++++|+..|+++++.+ +.+...|..++.+|..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFSE-SVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccccc-chhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHH
Confidence            34455555555555544        22222 33444445555555555555555555555443 3444455555555555


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKI  554 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~  554 (650)
                      .|++++|++.|+++++..+. +...|..++.++...|++++ +..|+++++.++. +...+..++.++...|++++|++.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            55555555555555544332 34444455555555555555 5555555544332 344445555555555555555555


Q ss_pred             HHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          555 LDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       555 ~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                      |+++++.+|.+..++..++.++..
T Consensus       557 ~~~al~l~P~~~~a~~~~~~~~~~  580 (681)
T 2pzi_A          557 LDEVPPTSRHFTTARLTSAVTLLS  580 (681)
T ss_dssp             HHTSCTTSTTHHHHHHHHHHHTC-
T ss_pred             HHhhcccCcccHHHHHHHHHHHHc
Confidence            555555544444555555555444

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.37  E-value=1.5e-12  Score=109.68  Aligned_cols=145  Identities=10%  Similarity=0.002  Sum_probs=89.3

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 045674          469 IDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV  548 (650)
Q Consensus       469 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  548 (650)
                      +.++...|++++|+..++......+. +...+..++..|...|++++|++.|+++++..+. +..++..++.++...|++
T Consensus         4 G~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~   81 (150)
T 4ga2_A            4 GSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENT   81 (150)
T ss_dssp             ---CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCch
Confidence            34445556666666666666543211 3334455666666677777777777776665444 566666677777777777


Q ss_pred             HHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          549 ARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKL-ADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       549 ~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      ++|+..|+++++.+|.+..++..++.++.+.|++++|.+. ++++++.. |.++.+|......+...|+
T Consensus        82 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           82 DKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred             HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence            7777777777776666667777777777777776655443 46666665 5566666666666655553

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.36  E-value=4.7e-11  Score=98.54  Aligned_cols=132  Identities=17%  Similarity=0.189  Sum_probs=94.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                      .|..++..+...|++++|..+++++.+.++. +...+..++..+...|++++|..+++++.+.++.+...+..++.++..
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence            3555666666777777777777777655333 556666677777777777777777777777666667777777777777


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          579 TGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       579 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      .|++++|.++++++++.. +.+..++..++.++...|++++|...++++++..+
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~  134 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDP  134 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHST
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCC
Confidence            788888888887777765 55667777777777888888888888887777654

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.36  E-value=9.3e-11  Score=105.35  Aligned_cols=178  Identities=16%  Similarity=0.129  Sum_probs=137.3

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----CHHHHHHHH
Q 045674          445 EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEH----RNEEALKLW  520 (650)
Q Consensus       445 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~A~~~~  520 (650)
                      +|.+.|++..+.|   ++..+..+...|...+++++|+..|++..+.|   +...+..|...|.. +    ++++|+..|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4667777777754   67777888888888888888888888887764   56677777777766 6    788888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHH----cCCHHHHHHHHH
Q 045674          521 DMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGII--PETAFEDMITCLCK----TGRIKEACKLAD  590 (650)
Q Consensus       521 ~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~----~g~~~~A~~~~~  590 (650)
                      ++..+.|   +...+..++..|..    .+++++|.++|+++.+.++.  .+..+..|+.+|..    .+++++|+++|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            8887754   56677778877776    77888888888888887763  37788888888888    778889999998


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCCCC
Q 045674          591 GIVDREREIPGKIRTALINALRKA-G-----NADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       591 ~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~~~  634 (650)
                      ++.+.  +.+...+..++..|... |     ++++|+.+++++.+.|...
T Consensus       154 ~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          154 GSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             HHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            88876  34556777788877653 3     8899999999988887653

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=99.34  E-value=9e-10  Score=103.32  Aligned_cols=233  Identities=11%  Similarity=0.031  Sum_probs=177.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH----HHc---C
Q 045674          371 GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE--RLEEAMQYFEFCRANGVAVNAMFYSSLIDGL----GKA---G  441 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~  441 (650)
                      ...++|+.++.+++..+.. +...|+.-...+...|  ++++++++++.+...+++ +..+|+.-..++    ...   +
T Consensus        47 e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~~  124 (306)
T 3dra_A           47 EYSERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNNDF  124 (306)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTCC
T ss_pred             CCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhccccC
Confidence            3345777777777765221 3455666666666666  888888888888877666 555555544444    444   6


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC------H
Q 045674          442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD--EALALFKRMEDEGCDQTVYTYTILINGMFKEHR------N  513 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~  513 (650)
                      ++++++.+++.+.+.. +.+..+|+....++.+.|.++  ++++.++++++..+. |...|+.-...+...++      +
T Consensus       125 ~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~  202 (306)
T 3dra_A          125 DPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTI  202 (306)
T ss_dssp             CTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred             CHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhH
Confidence            7889999999998875 778888888888888888887  889999999888765 88888887777777776      8


Q ss_pred             HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHhhCC---CCcHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          514 EEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR-ACKILDELAPKG---IIPETAFEDMITCLCKTGRIKEACKLA  589 (650)
Q Consensus       514 ~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~  589 (650)
                      +++++.+++++...+. |...|+.+...+.+.|+..+ +..+.+++.+.+   +.+..++..++.++.+.|+.++|++++
T Consensus       203 ~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~  281 (306)
T 3dra_A          203 DEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY  281 (306)
T ss_dssp             HHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            9999999999987666 88889888888888887444 556777777655   568889999999999999999999999


Q ss_pred             HHHHHc-CCCCCHHHHHHHHH
Q 045674          590 DGIVDR-EREIPGKIRTALIN  609 (650)
Q Consensus       590 ~~~~~~-~~~~~~~~~~~l~~  609 (650)
                      +.+.+. + |.....|...+.
T Consensus       282 ~~l~~~~D-pir~~yW~~~~~  301 (306)
T 3dra_A          282 DLLKSKYN-PIRSNFWDYQIS  301 (306)
T ss_dssp             HHHHHTTC-GGGHHHHHHHHH
T ss_pred             HHHHhccC-hHHHHHHHHHHh
Confidence            999874 4 566667765543

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.33  E-value=3.3e-11  Score=114.03  Aligned_cols=167  Identities=15%  Similarity=0.104  Sum_probs=122.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHH-HHH
Q 045674          459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAAS-FRA  537 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~-~~~  537 (650)
                      +.+...+..++..+.+.|++++|+..|+++.+..+. +...+..++..+...|++++|...++++....  |+... ...
T Consensus       114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~  190 (287)
T 3qou_A          114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLV  190 (287)
T ss_dssp             CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHH
T ss_pred             CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHH
Confidence            445566667777777778888888888877776544 66677777777778888888888877776543  33332 223


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcC
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP--GKIRTALINALRKAG  615 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g  615 (650)
                      ....+...++.++|...+++++...|.+..++..++.++...|++++|++.++++++.+ +.+  ..++..++.++...|
T Consensus       191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~-p~~~~~~a~~~l~~~~~~~g  269 (287)
T 3qou_A          191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXD-LTAADGQTRXTFQEILAALG  269 (287)
T ss_dssp             HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTGGGGHHHHHHHHHHHHHC
T ss_pred             HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcc-cccccchHHHHHHHHHHHcC
Confidence            33345666777778888888888888888888888888888888888888888888775 333  667788888888888


Q ss_pred             CHHHHHHHHHHHHH
Q 045674          616 NADLAIKLMHSKIG  629 (650)
Q Consensus       616 ~~~~A~~~~~~~~~  629 (650)
                      +.++|...+++.+.
T Consensus       270 ~~~~a~~~~r~al~  283 (287)
T 3qou_A          270 TGDALASXYRRQLY  283 (287)
T ss_dssp             TTCHHHHHHHHHHH
T ss_pred             CCCcHHHHHHHHHH
Confidence            88888888877664

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.33  E-value=1.8e-11  Score=115.97  Aligned_cols=228  Identities=15%  Similarity=0.108  Sum_probs=161.2

Q ss_pred             HhcCCHHHHHHHHHHHHH-------CCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC------C-CCCCHHHHHHH
Q 045674          368 AKLGSMNEAINIFERMKY-------EGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRAN------G-VAVNAMFYSSL  433 (650)
Q Consensus       368 ~~~~~~~~A~~~~~~~~~-------~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~------~-~~~~~~~~~~l  433 (650)
                      ...|++++|+.+|++..+       ........++..+...|...|++++|+..++++.+.      + ......++..+
T Consensus        12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l   91 (283)
T 3edt_B           12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL   91 (283)
T ss_dssp             -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred             CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence            345666666666666543       221223567888999999999999999999988754      1 12245678889


Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHc------C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCC-CCHHH
Q 045674          434 IDGLGKAGRVDEAEELFEEMVEK------G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE------GCD-QTVYT  499 (650)
Q Consensus       434 ~~~~~~~~~~~~A~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~-~~~~~  499 (650)
                      +.+|...|++++|...+++++..      . .+....++..++.+|...|++++|+..++++.+.      +.. ....+
T Consensus        92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~  171 (283)
T 3edt_B           92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT  171 (283)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence            99999999999999999999875      1 1334677889999999999999999999999775      112 24567


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC-------CCCC-CHHHHHHHHHHHHhcCC------HHHHHHHHHHHhhCCCCc
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDK-------GITP-TAASFRALSIGLCLSGK------VARACKILDELAPKGIIP  565 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-------~~~p-~~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~~~~~~  565 (650)
                      +..++.++...|++++|..+++++.+.       ...+ ....+..+...+...+.      +.++..+++......+..
T Consensus       172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  251 (283)
T 3edt_B          172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPTV  251 (283)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHHH
Confidence            888999999999999999999999863       1111 22234444444443333      333444443333332335


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          566 ETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ..++..++.++...|++++|.++++++++.
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            678899999999999999999999999864

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.33  E-value=6.6e-09  Score=105.68  Aligned_cols=125  Identities=15%  Similarity=0.063  Sum_probs=94.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-KVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ..|...+....+.+..+.|..+|+++ .. ...+...|...+..-...| +.+.|..+|+.+++..+.++..+...++..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e  364 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHH
Confidence            44666666666778899999999988 32 2235555554444333344 699999999999987777777778888888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      ...|+.+.|..+|+++.     .....|...+..-...|+.+.+.++++++.+
T Consensus       365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            88999999999999873     3567888888877888999999998888875

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.32  E-value=2e-09  Score=99.71  Aligned_cols=79  Identities=10%  Similarity=0.059  Sum_probs=34.5

Q ss_pred             HHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          376 AINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGV-AVNAMFYSSLIDGLGKAGRVDEAEELFEEMV  454 (650)
Q Consensus       376 A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  454 (650)
                      |+..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++.++.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            344444444332 22333333444444444555555555544444332 1133344444444555555555555555444


Q ss_pred             H
Q 045674          455 E  455 (650)
Q Consensus       455 ~  455 (650)
                      +
T Consensus       164 ~  164 (310)
T 3mv2_B          164 N  164 (310)
T ss_dssp             H
T ss_pred             h
Confidence            4

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=99.32  E-value=1.9e-10  Score=103.02  Aligned_cols=135  Identities=14%  Similarity=0.051  Sum_probs=99.8

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674          468 LIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK  547 (650)
Q Consensus       468 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~  547 (650)
                      ++.+|.+.|++++|+..|++.++..+. +...+..++.++...|++++|+..|+++++..+. +...+..++.+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence            888888899999999999988887654 7788888888888899999999999998887554 67788888888766654


Q ss_pred             --HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045674          548 --VARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALI  608 (650)
Q Consensus       548 --~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~  608 (650)
                        .+.+...++.+..  +. ....+...+.++...|++++|+..|+++++..  |+......+.
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~--P~~~~~~~l~  197 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRF--PSTEAQKTLD  197 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTS--CCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCHHHHHHHH
Confidence              3445566666543  22 23355667888888899999999999998764  6655444443

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.32  E-value=5.8e-11  Score=124.69  Aligned_cols=165  Identities=12%  Similarity=-0.031  Sum_probs=123.0

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL  519 (650)
Q Consensus       440 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  519 (650)
                      .|++++|++.++++.+.. +.+...+..++..|.+.|++++|++.+++..+..+. +...+..++.+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHR-PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             --------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHH
Confidence            478889999999888774 667888889999999999999999999999887544 678888888899999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHcC
Q 045674          520 WDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT---GRIKEACKLADGIVDRE  596 (650)
Q Consensus       520 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~  596 (650)
                      ++++++..+. +...+..++.++...|++++|.+.++++.+..+.+..++..++.++...   |++++|.+.++++++.+
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            9998886544 6778888899999999999999999999988888888889999999999   99999999999998876


Q ss_pred             CCCCHHHHHHHH
Q 045674          597 REIPGKIRTALI  608 (650)
Q Consensus       597 ~~~~~~~~~~l~  608 (650)
                       +.+...+..++
T Consensus       159 -p~~~~~~~~l~  169 (568)
T 2vsy_A          159 -VGAVEPFAFLS  169 (568)
T ss_dssp             -CCCSCHHHHTT
T ss_pred             -CcccChHHHhC
Confidence             55555555444

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.31  E-value=5.7e-10  Score=103.30  Aligned_cols=179  Identities=13%  Similarity=0.091  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 045674          411 AMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGC-PRDSYCYNVLIDALAKCGKLDEALALFKRME  489 (650)
Q Consensus       411 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  489 (650)
                      |+..|+++...+ .++...+..++.++...|++++|++++.+.+..+- ..+...+..++.++.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            555555555443 22344444566666666666666666666655431 1345556666666666666666666666666


Q ss_pred             HcCCCC-----CHHHHHHHHHHH--HhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674          490 DEGCDQ-----TVYTYTILINGM--FKEH--RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAP  560 (650)
Q Consensus       490 ~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  560 (650)
                      +.  .|     +..+...|+.++  ...|  ++.+|..+|+++.+.  .|+..+...+..++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            54  23     234444444442  2223  666666666666543  23322222222256666666666666665544


Q ss_pred             C----------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          561 K----------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       561 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .          ++.++.++..++.+....|+  +|.++++++.+..
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~  283 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD  283 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence            3          24456666555555555565  6666666666654

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=99.30  E-value=7.8e-11  Score=125.76  Aligned_cols=174  Identities=10%  Similarity=-0.016  Sum_probs=144.9

Q ss_pred             HhcCCHHHHHHHHHHHH--------HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 045674          368 AKLGSMNEAINIFERMK--------YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK  439 (650)
Q Consensus       368 ~~~~~~~~A~~~~~~~~--------~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  439 (650)
                      ...|++++|++.++++.        +.. ..+...+..+...+...|++++|+..|+++.+.++. +...+..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67899999999999988        431 224567888888999999999999999999887665 78889999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          440 AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKL  519 (650)
Q Consensus       440 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~  519 (650)
                      .|++++|+..|+++++.. +.+...+..++.+|.+.|++++ ++.|+++++.++. +...|..++.++...|++++|+..
T Consensus       480 ~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDG-VISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCc-hHHHHHHHHHHHHHcCCHHHHHHH
Confidence            999999999999999985 6688899999999999999999 9999999987655 788899999999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674          520 WDMMIDKGITPTAASFRALSIGLCLSGK  547 (650)
Q Consensus       520 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~  547 (650)
                      |+++++.++. +...+..++.++...|+
T Consensus       557 ~~~al~l~P~-~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPTSRH-FTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTTSTT-HHHHHHHHHHHTC----
T ss_pred             HHhhcccCcc-cHHHHHHHHHHHHccCC
Confidence            9998876433 45677778888766555

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.30  E-value=3e-11  Score=105.16  Aligned_cols=162  Identities=13%  Similarity=0.065  Sum_probs=112.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HH
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG-LC  543 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~  543 (650)
                      +..++..+.+.|++++|+..|+++.+..+. +...+..++.++...|++++|+..++++.+..+  +......++.. +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence            445556666777777777777776655433 566677777777777777777777777665433  44333322222 12


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHH
Q 045674          544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGNADLAIK  622 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~  622 (650)
                      ..+...+|...++++++..|.+...+..++.++...|++++|+..|+++++.+..+ +...+..++.++...|+.++|..
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~  165 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS  165 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred             hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence            22233457888888888888888888888888888888888888888888775211 25578888888888888888888


Q ss_pred             HHHHHHH
Q 045674          623 LMHSKIG  629 (650)
Q Consensus       623 ~~~~~~~  629 (650)
                      .|++++.
T Consensus       166 ~y~~al~  172 (176)
T 2r5s_A          166 KYRRQLY  172 (176)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            8888765

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=99.29  E-value=8.3e-12  Score=105.17  Aligned_cols=146  Identities=10%  Similarity=-0.064  Sum_probs=116.3

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR  512 (650)
Q Consensus       433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  512 (650)
                      |+.++...|++++|+..++...... +.+...+..++.+|.+.|++++|++.|++.++..+. +..+|..++.+|...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCc
Confidence            4455666788888888888876642 334556678888899999999999999999887655 78889999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH-HHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACK-ILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~-~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      +++|+..|+++++..+. +...+..++.++.+.|++++|.+ +++++++..|.++.++......+...|+
T Consensus        81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence            99999999999887555 67888889999999999877665 4688999888888888888888877774

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.26  E-value=4.1e-10  Score=92.81  Aligned_cols=131  Identities=16%  Similarity=0.207  Sum_probs=95.4

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          464 CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC  543 (650)
Q Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  543 (650)
                      .+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|..+++++.+.++. +...+..++..+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            4556666777777777777777777665433 5666667777777777777777777777765433 5666777777777


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          544 LSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ..|++++|.++++++.+..+.+...+..++.++...|++++|.+.++++++.+
T Consensus        81 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~  133 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD  133 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred             HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence            88888888888888877767677777788888888888888888888877653

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=99.25  E-value=2.9e-10  Score=119.42  Aligned_cols=163  Identities=10%  Similarity=-0.056  Sum_probs=93.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 045674          405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL  484 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~  484 (650)
                      .|++++|++.++++.+..+. +...+..+...+...|++++|.+.+++.++.. +.+...+..++.+|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            35666677777666655443 55666666667777777777777777766654 45566666677777777777777777


Q ss_pred             HHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHhhC
Q 045674          485 FKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS---GKVARACKILDELAPK  561 (650)
Q Consensus       485 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~  561 (650)
                      +++..+..+. +...+..++.++...|++++|.+.++++.+..+. +...+..++.++...   |++++|.+.++++++.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            7776665433 5666666666677777777777777776665433 455666666666666   6777777777777666


Q ss_pred             CCCcHHHHHH
Q 045674          562 GIIPETAFED  571 (650)
Q Consensus       562 ~~~~~~~~~~  571 (650)
                      ++.+...+..
T Consensus       158 ~p~~~~~~~~  167 (568)
T 2vsy_A          158 GVGAVEPFAF  167 (568)
T ss_dssp             TCCCSCHHHH
T ss_pred             CCcccChHHH
Confidence            6654444433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=99.24  E-value=9.2e-10  Score=98.79  Aligned_cols=176  Identities=11%  Similarity=0.027  Sum_probs=140.8

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC----CHHHHHHHH
Q 045674          410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG----KLDEALALF  485 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g----~~~~A~~~~  485 (650)
                      +|++.|++..+.+   +...+..+...|...+++++|+..|++..+.|   +...+..|..+|.. +    ++++|+..|
T Consensus         4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~   76 (212)
T 3rjv_A            4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLA   76 (212)
T ss_dssp             CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHH
T ss_pred             hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHH
Confidence            4677777777764   67777888888888889999999999888865   67778888888887 6    889999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHh----cCCHHHHHHHHH
Q 045674          486 KRMEDEGCDQTVYTYTILINGMFK----EHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCL----SGKVARACKILD  556 (650)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~----~g~~~~A~~~~~  556 (650)
                      ++..+.|   +...+..|...|..    .+++++|+..|++..+.+.. .+...+..|+..|..    .+++++|..+|+
T Consensus        77 ~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~  153 (212)
T 3rjv_A           77 EKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFK  153 (212)
T ss_dssp             HHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHH
T ss_pred             HHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHH
Confidence            9887764   67777888887776    78999999999998876532 126778888888888    788999999999


Q ss_pred             HHhhCCCCcHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHcC
Q 045674          557 ELAPKGIIPETAFEDMITCLCKT-G-----RIKEACKLADGIVDRE  596 (650)
Q Consensus       557 ~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~~~~~~  596 (650)
                      ++.+. +.+...+..|+.+|... |     ++++|+++|+++.+.+
T Consensus       154 ~A~~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g  198 (212)
T 3rjv_A          154 GSSSL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG  198 (212)
T ss_dssp             HHHHT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred             HHHHc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence            99887 34566788888888754 3     8999999999998876

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=99.24  E-value=1.1e-09  Score=99.35  Aligned_cols=186  Identities=12%  Similarity=-0.014  Sum_probs=132.0

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH---HHH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN--AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS---YCY  465 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~---~~~  465 (650)
                      +...+..+...+...|++++|+..|+.+.+..+...  ...+..++.++.+.|++++|+..|+++++.. |.+.   ..+
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~-P~~~~~~~a~   81 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLN-PTHPNIDYVM   81 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHC-cCCCcHHHHH
Confidence            345566677789999999999999999998755422  4577889999999999999999999999874 3333   256


Q ss_pred             HHHHHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          466 NVLIDALAK------------------CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKG  527 (650)
Q Consensus       466 ~~l~~~~~~------------------~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  527 (650)
                      ..++.++.+                  .|++++|+..|+++++..+. +...+.......          .+....    
T Consensus        82 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~----------~~~~~~----  146 (225)
T 2yhc_A           82 YMRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLV----------FLKDRL----  146 (225)
T ss_dssp             HHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHH----------HHHHHH----
T ss_pred             HHHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHH----------HHHHHH----
Confidence            667777665                  34556666666666554322 111111111000          000000    


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          528 ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       528 ~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                          ......++..+.+.|++++|+..|+++++..|.++   .++..++.++.+.|++++|++.++.+...+
T Consensus       147 ----~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 ----AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ----HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ----HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence                01123567788999999999999999999888754   679999999999999999999999988764

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.23  E-value=2.7e-10  Score=92.33  Aligned_cols=106  Identities=11%  Similarity=0.016  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      ..+...+..+.+.|++++|++.|+++++.+|.+..+|..++.++...|++++|++.++++++.+ +.+..+|..++.+|.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence            3456667777777777777777777777777777777777777777777777777777777765 566677777777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCChhhhh
Q 045674          613 KAGNADLAIKLMHSKIGVGYDRMGSIK  639 (650)
Q Consensus       613 ~~g~~~~A~~~~~~~~~~~~~~~~~~~  639 (650)
                      ..|++++|++.|+++++..|.......
T Consensus        93 ~~~~~~~A~~~~~~al~l~P~~~~a~~  119 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVDPSNEEARE  119 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHCcCCHHHHH
Confidence            777777777777777777666544443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.22  E-value=2e-11  Score=102.15  Aligned_cols=104  Identities=8%  Similarity=-0.076  Sum_probs=88.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      +...+..++..+...|++++|...|++++..+|.+...|..++.++...|++++|++.|+++++.+ |.++.+|..++.+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHH
Confidence            345677888888889999999999999998888888889999999999999999999999998886 7778888888999


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          611 LRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       611 ~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      |...|++++|+..|+++++..+++.
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~~~~~  138 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHSNDEK  138 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCCHH
Confidence            9999999999999999988876543

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=99.22  E-value=1.4e-10  Score=100.80  Aligned_cols=161  Identities=10%  Similarity=0.042  Sum_probs=124.6

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HH
Q 045674          430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILING-MF  508 (650)
Q Consensus       430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~  508 (650)
                      +..+...+...|++++|...++++++.. |.+...+..++.++.+.|++++|+..++++....+  +...+..+... +.
T Consensus         9 ~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~   85 (176)
T 2r5s_A            9 LLKQVSELLQQGEHAQALNVIQTLSDEL-QSRGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELH   85 (176)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHTSCHHH-HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHH
Confidence            4456677888888999988888887764 66788888888888889999999998888877643  44433333222 12


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      ..++..+|+..++++++..+. +...+..++.++...|++++|...|+++++..|.  +..++..++.++...|+.++|.
T Consensus        86 ~~~~~~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~  164 (176)
T 2r5s_A           86 QQAAESPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIA  164 (176)
T ss_dssp             HHHTSCHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHH
T ss_pred             hhcccchHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHH
Confidence            222334578888888876544 6788889999999999999999999999998876  4668899999999999999999


Q ss_pred             HHHHHHHH
Q 045674          587 KLADGIVD  594 (650)
Q Consensus       587 ~~~~~~~~  594 (650)
                      ..|++++.
T Consensus       165 ~~y~~al~  172 (176)
T 2r5s_A          165 SKYRRQLY  172 (176)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            99998764

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=99.22  E-value=3e-10  Score=107.41  Aligned_cols=165  Identities=10%  Similarity=0.050  Sum_probs=140.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH-HHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYT-ILI  504 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~-~l~  504 (650)
                      +...+..+...+...|++++|...|+++++.. |.+...+..++.++.+.|++++|...++++....+  +..... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p--~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQ--DTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGC--SHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhc--chHHHHHHHH
Confidence            55667778888999999999999999999985 77889999999999999999999999999887643  443332 333


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc--HHHHHHHHHHHHHcCCH
Q 045674          505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP--ETAFEDMITCLCKTGRI  582 (650)
Q Consensus       505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~  582 (650)
                      ..+...++.++|+..++++++..+. +...+..++..+...|++++|+..|+++++..|.+  ..++..++.++...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            3466778888899999999987655 78899999999999999999999999999988885  88999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 045674          583 KEACKLADGIVD  594 (650)
Q Consensus       583 ~~A~~~~~~~~~  594 (650)
                      ++|...|++.+.
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999999998764

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=99.20  E-value=1.1e-07  Score=96.72  Aligned_cols=125  Identities=12%  Similarity=0.049  Sum_probs=93.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFK-EHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      .+|...+..+.+.++.+.|..+|+++ +. ...+...|...+..-.. .++.+.|..+|+.+++..+. +...+...+..
T Consensus       287 ~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~-~~~~~~~yid~  363 (493)
T 2uy1_A          287 LLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPD-STLLKEEFFLF  363 (493)
T ss_dssp             HHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            56777777777788899999999999 32 22345555433322223 34699999999999875333 45566667777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      ....|+.+.|..+|+++.    .....|...+..-...|+.+.+.++++++.+
T Consensus       364 e~~~~~~~~aR~l~er~~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          364 LLRIGDEENARALFKRLE----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHHTCHHHHHHHHHHSC----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHH----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            788999999999999983    3678899998888889999999999988874

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=99.20  E-value=5.2e-10  Score=90.65  Aligned_cols=111  Identities=13%  Similarity=0.068  Sum_probs=90.5

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      ..+...+..|.+.|++++|++.|+++++..+. +...+..++.++...|++++|+..++++++.++.+..+|..++.++.
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~   92 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV   92 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence            45666777888888888888888888876544 67788888888888888888888888888888888888888888888


Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          578 KTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      ..|++++|++.|+++++.+ |.+..++..+..+
T Consensus        93 ~~~~~~~A~~~~~~al~l~-P~~~~a~~~l~~~  124 (126)
T 4gco_A           93 AMREWSKAQRAYEDALQVD-PSNEEAREGVRNC  124 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-cCCHHHHHHHHHh
Confidence            8888888888888888886 6677777666654

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.19  E-value=6.1e-09  Score=98.55  Aligned_cols=226  Identities=10%  Similarity=-0.034  Sum_probs=163.3

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-CHHHH
Q 045674          405 NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKC-G-KLDEA  481 (650)
Q Consensus       405 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~~A  481 (650)
                      .+..++|+++++.++..++. +..+|+.-..++...+ .++++++.++.++... +.+..+|+....++.+. + +++++
T Consensus        67 ~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E  144 (349)
T 3q7a_A           67 EEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE  144 (349)
T ss_dssp             TCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred             CCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence            34456788888888777666 6667777777777777 4888888888888775 67778888877777776 6 77888


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC------
Q 045674          482 LALFKRMEDEGCDQTVYTYTILINGMFKEHRNE--------EALKLWDMMIDKGITPTAASFRALSIGLCLSGK------  547 (650)
Q Consensus       482 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~------  547 (650)
                      +++++++++..++ |..+|+.-..++...|+++        ++++.++++++..+. |...|+....++.+.++      
T Consensus       145 L~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~  222 (349)
T 3q7a_A          145 IEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSR  222 (349)
T ss_dssp             HHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHH
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchH
Confidence            8888888877555 7777777666665555555        888888888887665 77788888877777776      


Q ss_pred             -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH--------------------HHHHHHHHHHHHcC-----CCCCH
Q 045674          548 -VARACKILDELAPKGIIPETAFEDMITCLCKTGRI--------------------KEACKLADGIVDRE-----REIPG  601 (650)
Q Consensus       548 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~-----~~~~~  601 (650)
                       ++++++++++++...|.+..+|+.+...+.+.|+.                    .+..+....+....     ..+++
T Consensus       223 ~~~eELe~~~~aI~~~P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  302 (349)
T 3q7a_A          223 SLQDELIYILKSIHLIPHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP  302 (349)
T ss_dssp             HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred             HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence             68899999999988888999998888888777753                    23333333333221     13567


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          602 KIRTALINALRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      .++..++..|...|+.++|.++++.+.++ ++|.
T Consensus       303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpi  335 (349)
T 3q7a_A          303 LALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQM  335 (349)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGG
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChH
Confidence            78888999999999999999999987643 4443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.19  E-value=1.7e-08  Score=95.12  Aligned_cols=224  Identities=10%  Similarity=0.010  Sum_probs=160.1

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC--C
Q 045674          410 EAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGR----------VDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG--K  477 (650)
Q Consensus       410 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~  477 (650)
                      +|+.+++.++..++. +..+|+.-..++...+.          +++++.+++.++... |.+..+|+....++.+.|  .
T Consensus        48 eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~  125 (331)
T 3dss_A           48 SVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPN  125 (331)
T ss_dssp             HHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCC
T ss_pred             HHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCccc
Confidence            566666666665554 44444443333333222          567788888887764 678888888877777777  4


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc-----------
Q 045674          478 LDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR-NEEALKLWDMMIDKGITPTAASFRALSIGLCLS-----------  545 (650)
Q Consensus       478 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------  545 (650)
                      +++++.+++++.+..+. |..+|+.-..++...|. ++++++.++++++..+. |...|+.....+...           
T Consensus       126 ~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~  203 (331)
T 3dss_A          126 WARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGR  203 (331)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC------C
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccc
Confidence            78888888888887655 77778777777777777 58888888888877665 777777766666554           


Q ss_pred             ---CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          546 ---GKVARACKILDELAPKGIIPETAFEDMITCLCKT-----------GRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       546 ---g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                         +.++++++++.+++...|.+..+|+.+...+...           +.++++++.++++++.. |.+  .|..+..++
T Consensus       204 ~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~-pd~--~w~l~~~~~  280 (331)
T 3dss_A          204 LPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE-PEN--KWCLLTIIL  280 (331)
T ss_dssp             CCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC-TTC--HHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC-ccc--chHHHHHHH
Confidence               4588999999999999999999998777776665           46889999999999875 444  343333322


Q ss_pred             -----HhcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674          612 -----RKAGNADLAIKLMHSKIGVGYDRMGSIKR  640 (650)
Q Consensus       612 -----~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  640 (650)
                           ...|..+++...+.++++.+|...+....
T Consensus       281 ~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d  314 (331)
T 3dss_A          281 LMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDD  314 (331)
T ss_dssp             HHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHH
T ss_pred             HHHhhcccccHHHHHHHHHHHHHhCcchhhHHHH
Confidence                 24678899999999999987765554443

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.18  E-value=6.6e-11  Score=99.21  Aligned_cols=101  Identities=12%  Similarity=0.010  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      ...+..++..+...|++++|...|++++..+|.+...|..++.++...|++++|++.|+++++.+ |.+..++..++.+|
T Consensus        21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~   99 (148)
T 2vgx_A           21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence            33455556666666666666666666666666666666666666666666666666666666654 45556666666666


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCC
Q 045674          612 RKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       612 ~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ...|++++|+..|+++++..+.
T Consensus       100 ~~~g~~~~A~~~~~~al~~~p~  121 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQELIAN  121 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHTT
T ss_pred             HHcCCHHHHHHHHHHHHHHCcC
Confidence            6666666666666666665544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.17  E-value=1.4e-09  Score=97.96  Aligned_cols=128  Identities=14%  Similarity=-0.058  Sum_probs=87.0

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL  542 (650)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  542 (650)
                      ..+..++..+...|++++|+..|+++.    .++...+..++.++...|++++|+..++++++..+. +...+..++.++
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence            345556666777777777777776653    346667777777777777777777777777765433 556666777777


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCcH----------------HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          543 CLSGKVARACKILDELAPKGIIPE----------------TAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ...|++++|...++++.+..+.+.                .++..++.++...|++++|.+.++++++.
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            777777777777777776655544                66677777777777777777777777654

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.13  E-value=3.7e-10  Score=108.11  Aligned_cols=225  Identities=10%  Similarity=-0.007  Sum_probs=162.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK-NERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAE  447 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~  447 (650)
                      ..|++++|.+++++..+..  +.         .+.. .+++++|...|..+               +..|...|++++|.
T Consensus         3 ~~~~~~eA~~~~~~a~k~~--~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~   56 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYL--KT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAK   56 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHH--CC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHc--cc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHH
Confidence            3567788888888776531  11         1222 57788888777654               45678899999999


Q ss_pred             HHHHHHHHcC----CC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC---CC--CHHHHHHHHHHHHhcCCHHHHH
Q 045674          448 ELFEEMVEKG----CP-RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGC---DQ--TVYTYTILINGMFKEHRNEEAL  517 (650)
Q Consensus       448 ~~~~~~~~~~----~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~~~~~~A~  517 (650)
                      ..|.++.+..    -+ .-..++..++.+|.+.|++++|+..|++.++...   .+  ...+++.+..+|.. |++++|+
T Consensus        57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~  135 (307)
T 2ifu_A           57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV  135 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence            9999887641    00 1145788899999999999999999998876411   11  14577788888888 9999999


Q ss_pred             HHHHHHHHCCCCC-C----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHHHHHHHHHHHcCCHHHHH
Q 045674          518 KLWDMMIDKGITP-T----AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       518 ~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      ..++++++..... +    ..++..++.++...|++++|+..|+++++..+.      ....+..++.++...|++++|+
T Consensus       136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~  215 (307)
T 2ifu_A          136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ  215 (307)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence            9999988632111 1    457888999999999999999999999875332      1346777888888899999999


Q ss_pred             HHHHHHHHcCCCCC--HH---HHHHHHHHHHhcCCHHHHHHH
Q 045674          587 KLADGIVDREREIP--GK---IRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       587 ~~~~~~~~~~~~~~--~~---~~~~l~~~~~~~g~~~~A~~~  623 (650)
                      ..|++++ .. +..  ..   ....++.++ ..|+.+.+..+
T Consensus       216 ~~~~~al-~~-p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~  254 (307)
T 2ifu_A          216 KCVRESY-SI-PGFSGSEDCAALEDLLQAY-DEQDEEQLLRV  254 (307)
T ss_dssp             HHHHHHT-TS-TTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred             HHHHHHh-CC-CCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence            9999999 54 322  21   234455544 67887766663

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.12  E-value=2.9e-09  Score=91.37  Aligned_cols=131  Identities=13%  Similarity=0.049  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ...+..++..+...|++++|...++++++..+. +...+..++.++...|++++|...++++.+..+.+..++..++.++
T Consensus        13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~   91 (166)
T 1a17_A           13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            345666777778888888888888888876443 6778888888888899999999999998888888888888999999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH--HHHhcCCHHHHHHHHHHHHH
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIRTALIN--ALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~  629 (650)
                      ...|++++|.+.++++++.. +.+...+..+..  .+...|++++|++.+++..+
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            99999999999999998875 556666644444  47788999999998887655

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=99.12  E-value=4.8e-10  Score=105.61  Aligned_cols=197  Identities=12%  Similarity=-0.007  Sum_probs=134.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      +...+..++..+...|++++|+..|+++++.. +.+...+..++.+|.+.|++++|+..++++++..+. +...+..++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            45567778888888888888988888888874 567888888888888899999999999888887544 6778888888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      ++...|++++|...|+++.+.++. +...+...++...   +..++..+........+.+..+...++..+  .|++++|
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A  154 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSAL---RIAKKKRWNSIEERRIHQESELHSYLTRLI--AAERERE  154 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHH---HHHHHHHHHHHHHTCCCCCCHHHHHHHHHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHH---HHHHHHHHHHHHHHHHhhhHHHHHHHHHHH--HHHHHHH
Confidence            888899999999988888764221 1001111122211   112222333333333344666666665543  6889999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHHCC
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKA-GNADLAIKLMHSKIGVG  631 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~  631 (650)
                      ++.++++++.+ +.+......+...+.+. +.+++|.++|.++.+..
T Consensus       155 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~~  200 (281)
T 2c2l_A          155 LEECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDEKR  200 (281)
T ss_dssp             HTTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCTT
T ss_pred             HHHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhccc
Confidence            99999988764 44444445555555555 67888999998887643

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=99.11  E-value=1.3e-09  Score=104.35  Aligned_cols=224  Identities=13%  Similarity=0.046  Sum_probs=145.8

Q ss_pred             cCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 045674          335 VGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAK-LGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQ  413 (650)
Q Consensus       335 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~  413 (650)
                      .|++++|.+++++..+.... .          +.+ .+++++|...|.++               ...|...|++++|..
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~-~----------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~   57 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT-S----------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKD   57 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC-C----------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc-c----------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHH
Confidence            46677777777776654110 0          111 46677777776654               234666777777777


Q ss_pred             HHHHHHHCCCC-----CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 045674          414 YFEFCRANGVA-----VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK----GCPR-DSYCYNVLIDALAKCGKLDEALA  483 (650)
Q Consensus       414 ~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~A~~  483 (650)
                      .|.++......     .-..+|..+..+|...|++++|+..|++.++.    |-+. ...++..++.+|.. |++++|+.
T Consensus        58 ~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~  136 (307)
T 2ifu_A           58 AYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVH  136 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHH
Confidence            77665543111     01346677777788888888888888877653    1011 13567778888877 99999988


Q ss_pred             HHHHHHHcCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHH
Q 045674          484 LFKRMEDEGCDQ-----TVYTYTILINGMFKEHRNEEALKLWDMMIDK----GITPT-AASFRALSIGLCLSGKVARACK  553 (650)
Q Consensus       484 ~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~p~-~~~~~~l~~~~~~~g~~~~A~~  553 (650)
                      .|++.++.....     ...+++.++..|...|++++|+..|+++++.    +..+. ...+..++.++...|++++|..
T Consensus       137 ~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~  216 (307)
T 2ifu_A          137 LYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQK  216 (307)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence            888876532111     1456778888899999999999999988753    11111 2356667777888899999999


Q ss_pred             HHHHHhhCCCCc-----HHHHHHHHHHHHHcCCHHHHHH
Q 045674          554 ILDELAPKGIIP-----ETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       554 ~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      .|++++ ..+..     ...+..++.++ ..|+.+.+.+
T Consensus       217 ~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          217 CVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            999998 76641     12344555554 5677666655

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=99.10  E-value=5.4e-08  Score=92.09  Aligned_cols=234  Identities=9%  Similarity=-0.007  Sum_probs=138.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC-CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-C-CHHHHH
Q 045674          371 GSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE-RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKA-G-RVDEAE  447 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~A~  447 (650)
                      +..++|+++++++...... +...|+.-...+...| .+++++.+++.+...+++ +..+|+.-..++... + ++++++
T Consensus        68 e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL  145 (349)
T 3q7a_A           68 EKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEI  145 (349)
T ss_dssp             CCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred             CCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHH
Confidence            3345566666666554211 3344554444455555 366666666666666555 555565555555554 4 566666


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-------
Q 045674          448 ELFEEMVEKGCPRDSYCYNVLIDALAKCGKLD--------EALALFKRMEDEGCDQTVYTYTILINGMFKEHR-------  512 (650)
Q Consensus       448 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--------~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-------  512 (650)
                      ++++.+++.. +.+..+|+....++.+.|.++        ++++.++++++..+. |...|+.....+...++       
T Consensus       146 ~~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~  223 (349)
T 3q7a_A          146 EYIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS  223 (349)
T ss_dssp             HHHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred             HHHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence            6666666654 556666666555555555444        667777777766554 66667666666666554       


Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH--------------------HHHHHHHHHHhhCC------CCcH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV--------------------ARACKILDELAPKG------IIPE  566 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~--------------------~~A~~~~~~~~~~~------~~~~  566 (650)
                      ++++++.+++++...+. |...|..+...+.+.|+.                    .+..++...+....      +.+.
T Consensus       224 ~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~  302 (349)
T 3q7a_A          224 LQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVP  302 (349)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCCH
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCcH
Confidence            56777777777765544 666666666666555543                    23333333333332      3477


Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALIN  609 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  609 (650)
                      .++.-++.+|...|+.++|.++++.+.+.--+.....|...+.
T Consensus       303 ~al~~l~d~~~~~~~~~~a~~~~~~l~~~~dpir~~yw~~~~~  345 (349)
T 3q7a_A          303 LALEYLADSFIEQNRVDDAAKVFEKLSSEYDQMRAGYWEFRRR  345 (349)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHhhhChHHHHHHHHHHH
Confidence            7888899999999999999999999875532445555655443

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=99.09  E-value=3.9e-09  Score=96.40  Aligned_cols=192  Identities=10%  Similarity=-0.057  Sum_probs=123.6

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHc------------CCC-----
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVL-------IDALAKCGKLDEALALFKRMEDE------------GCD-----  494 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~g~~~~A~~~~~~~~~~------------~~~-----  494 (650)
                      ..++.+.|.+.|.++.+.. |.....|..+       ...+.+.++..+++..+.+....            |.-     
T Consensus        18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            4677777777777777764 5566677666       45555555555555555544431            100     


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHH
Q 045674          495 ---QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAF  569 (650)
Q Consensus       495 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~  569 (650)
                         .-......+...+...|++++|.++|+.+...+  |+......++..+.+.|++++|+..|+........  ...++
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~  174 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAG  174 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHH
Confidence               002233445566677788888888887776543  33335556666777788888888888766554211  13467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          570 EDMITCLCKTGRIKEACKLADGIVDREREI--PGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ..++.++...|++++|+..|+++......|  ....+...+.++.+.|+.++|+..|++++...+.
T Consensus       175 ~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~  240 (282)
T 4f3v_A          175 VAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE  240 (282)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence            777888888888888888888877433213  3346667777788888888888888888887776

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.09  E-value=1.9e-08  Score=95.53  Aligned_cols=164  Identities=9%  Similarity=-0.033  Sum_probs=123.8

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHH
Q 045674          467 VLIDALAKCGKLDEALALFKRMEDEGCD-QTV----YTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFR  536 (650)
Q Consensus       467 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~  536 (650)
                      ..+..+...|++++|...+++..+.... ++.    ..+..++..+...|++++|+..++++++.... ++    ..+++
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            3456678889999999999888774322 221    12334666666778999999999999874222 22    33688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhh----CCCC---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCC-CHHHH
Q 045674          537 ALSIGLCLSGKVARACKILDELAP----KGII---PETAFEDMITCLCKTGRIKEACKLADGIVDRE----REI-PGKIR  604 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~-~~~~~  604 (650)
                      .++.+|...|++++|..+++++++    ....   ...++..++.+|...|++++|+++++++++..    ... -..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            899999999999999999999884    1111   34578899999999999999999999988652    111 16788


Q ss_pred             HHHHHHHHhcC-CHHHHHHHHHHHHHC
Q 045674          605 TALINALRKAG-NADLAIKLMHSKIGV  630 (650)
Q Consensus       605 ~~l~~~~~~~g-~~~~A~~~~~~~~~~  630 (650)
                      ..++.+|.+.| ++++|++.++++++.
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            89999999999 579999999998874

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=99.08  E-value=3.2e-10  Score=94.45  Aligned_cols=99  Identities=16%  Similarity=0.035  Sum_probs=56.8

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK  613 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (650)
                      .+..++..+...|++++|...|++++..+|.+...|..++.++...|++++|+..|+++++.+ |.++..+..++.+|..
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~   98 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHLQ   98 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHH
Confidence            344455555555666666666666555555555555556666666666666666666655554 4455555555555666


Q ss_pred             cCCHHHHHHHHHHHHHCCCC
Q 045674          614 AGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       614 ~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .|++++|+..++++++..+.
T Consensus        99 ~g~~~~A~~~~~~al~~~p~  118 (142)
T 2xcb_A           99 LGDLDGAESGFYSARALAAA  118 (142)
T ss_dssp             TTCHHHHHHHHHHHHHHHHT
T ss_pred             cCCHHHHHHHHHHHHHhCCC
Confidence            66666666666655555443

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=99.08  E-value=5.3e-10  Score=93.39  Aligned_cols=104  Identities=11%  Similarity=0.023  Sum_probs=92.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...+..++..+...|++++|+..|+++++..+. +...|..++.++...|++++|+..|+++++.+|.++.++..++.+
T Consensus        35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~  113 (151)
T 3gyz_A           35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQC  113 (151)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHH
Confidence            4557778888899999999999999999987655 788999999999999999999999999999999999999999999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          576 LCKTGRIKEACKLADGIVDREREIPGK  602 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~  602 (650)
                      |...|++++|++.|+++++..  |+..
T Consensus       114 ~~~lg~~~eA~~~~~~al~l~--~~~~  138 (151)
T 3gyz_A          114 QLRLKAPLKAKECFELVIQHS--NDEK  138 (151)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC--CCHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhC--CCHH
Confidence            999999999999999999875  5544

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=99.05  E-value=1.5e-08  Score=91.13  Aligned_cols=131  Identities=9%  Similarity=-0.095  Sum_probs=85.7

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF  508 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (650)
                      .+..++..+...|++++|+..|+++.    .++...+..++.+|.+.|++++|+..+++..+..+. +...+..++.++.
T Consensus         8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~~   82 (213)
T 1hh8_A            8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYY   82 (213)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHH
Confidence            34455666667777777777776653    346667777777777777777777777777665433 5666666777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCC---------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          509 KEHRNEEALKLWDMMIDKGITP---------------TAASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p---------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      ..|++++|+..|+++.+..+..               ....+..++.++...|++++|.+.++++.+..+.
T Consensus        83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  153 (213)
T 1hh8_A           83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE  153 (213)
T ss_dssp             HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred             HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence            7777777777777776653321               1155666677777777777777777777766554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=99.04  E-value=4.6e-09  Score=101.63  Aligned_cols=97  Identities=10%  Similarity=-0.068  Sum_probs=63.3

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      ...+..++.++.+.|++++|+..++++++..|.+..++..++.++...|++++|+..|+++++.. +.+..++..++.++
T Consensus       196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~  274 (336)
T 1p5q_A          196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ  274 (336)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            35566666666666666666666666666666666666666777777777777777777766665 55566666666666


Q ss_pred             HhcCCHHHH-HHHHHHHHH
Q 045674          612 RKAGNADLA-IKLMHSKIG  629 (650)
Q Consensus       612 ~~~g~~~~A-~~~~~~~~~  629 (650)
                      ...|++++| ...++++++
T Consensus       275 ~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          275 QRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             HHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHH
Confidence            666666666 445555543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=99.04  E-value=1.8e-09  Score=93.92  Aligned_cols=121  Identities=11%  Similarity=0.051  Sum_probs=69.1

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCH--HH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG-LCLSGKV--AR  550 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~--~~  550 (650)
                      ..|++++|+..+++..+..+. +...|..++..|...|++++|...|+++++..+. +...+..++.+ +...|++  ++
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~~   99 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTAQ   99 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCHH
T ss_pred             hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchHH
Confidence            445566666666666555332 5555666666666666666666666666654332 45555555555 5555665  66


Q ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          551 ACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      |...++++++.+|.+..++..++.++...|++++|...++++++..
T Consensus       100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A          100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            6666666666655556666666666666666666666666666554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=99.03  E-value=5e-09  Score=85.92  Aligned_cols=118  Identities=10%  Similarity=-0.020  Sum_probs=76.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|.++++++.+..+.+..++..++.+
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~   93 (133)
T 2lni_A           15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA   93 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence            4455666666666666666666666666654333 556666666666667777777777777776666666667777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          576 LCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG  615 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  615 (650)
                      +...|++++|++.++++++.. +.+...+..++.++...|
T Consensus        94 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~  132 (133)
T 2lni_A           94 LEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY  132 (133)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred             HHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence            777777777777777776654 445556666666665554

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=99.03  E-value=1.5e-09  Score=90.90  Aligned_cols=111  Identities=14%  Similarity=0.010  Sum_probs=89.7

Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674          484 LFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       484 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      .|++++...+. +...+..++..+...|++++|+..|++++...+. +...+..++.++...|++++|+..|++++..+|
T Consensus         9 ~~~~al~~~p~-~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p   86 (148)
T 2vgx_A            9 TIAMLNEISSD-TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI   86 (148)
T ss_dssp             SHHHHTTCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             hHHHHHcCCHh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC
Confidence            44555544222 4556677788888889999999999888876544 777888888888999999999999999998888


Q ss_pred             CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          564 IPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       564 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      .+...+..++.++...|++++|++.|+++++..
T Consensus        87 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~  119 (148)
T 2vgx_A           87 XEPRFPFHAAECLLQXGELAEAESGLFLAQELI  119 (148)
T ss_dssp             TCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence            888888899999999999999999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=99.03  E-value=2.7e-08  Score=94.47  Aligned_cols=165  Identities=8%  Similarity=-0.017  Sum_probs=105.2

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC---CCC--HHH
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQT-----VYTYTILINGMFKEHRNEEALKLWDMMIDKGI---TPT--AAS  534 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~p~--~~~  534 (650)
                      +...+..+...|++++|.+.+++..+......     ...+..++..+...|++++|+..++++.+...   .+.  ..+
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  157 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI  157 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence            34445556667777777777766665432211     01233344555667778888887777764321   111  346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh---hCCCCc----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC----C-CHH
Q 045674          535 FRALSIGLCLSGKVARACKILDELA---PKGIIP----ETAFEDMITCLCKTGRIKEACKLADGIVDRERE----I-PGK  602 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~-~~~  602 (650)
                      +..++..|...|++++|..+++++.   +..+.+    ..++..++.+|...|++++|+++++++++....    . -..
T Consensus       158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~  237 (293)
T 2qfc_A          158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ  237 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence            7777778888888888888888776   322221    257777888888888888888888887754200    0 155


Q ss_pred             HHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 045674          603 IRTALINALRKAGNADLA-IKLMHSKIG  629 (650)
Q Consensus       603 ~~~~l~~~~~~~g~~~~A-~~~~~~~~~  629 (650)
                      ++..++.+|.+.|++++| ...++++++
T Consensus       238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          238 LYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            677788888888888888 666777665

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=99.03  E-value=2.6e-09  Score=86.80  Aligned_cols=98  Identities=10%  Similarity=0.021  Sum_probs=65.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      ..+..++..+...|++++|+..|+++++..|.+..++..++.++...|++++|+..++++++.+ +.+..++..++.++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence            3455566666666666666666666666666666666666666666666666666666666665 555666666666666


Q ss_pred             hcCCHHHHHHHHHHHHHCC
Q 045674          613 KAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       613 ~~g~~~~A~~~~~~~~~~~  631 (650)
                      ..|++++|+..++++++..
T Consensus        84 ~~~~~~~A~~~~~~al~~~  102 (126)
T 3upv_A           84 AVKEYASALETLDAARTKD  102 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHhC
Confidence            6666666666666666665

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=99.02  E-value=7e-09  Score=84.68  Aligned_cols=120  Identities=16%  Similarity=0.047  Sum_probs=85.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|.+.++++.+..+.+...+..++.+
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~   89 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHH
Confidence            3445566666677777777777777777665333 566677777777777777777777777777766677777777777


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCH
Q 045674          576 LCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNA  617 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  617 (650)
                      +...|++++|.+.++++++.. +.+...+..++.++...|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhcC
Confidence            778888888888887777765 55667777777777766654

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=99.01  E-value=5.9e-08  Score=92.06  Aligned_cols=162  Identities=10%  Similarity=-0.012  Sum_probs=121.2

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHH
Q 045674          433 LIDGLGKAGRVDEAEELFEEMVEKGCPRDSY------CYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYT  501 (650)
Q Consensus       433 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~  501 (650)
                      .+..+...|++++|...+++..+.. +.+..      .+..++..+...|++++|+..++++.+.... .+    ..+++
T Consensus        81 ~i~~~~~~~~y~~a~~~~~~~l~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           81 QVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHhhHHHHHHHHHHHhccc-cCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            4566778888888888888887742 22221      2334667777778999999999988874222 22    34688


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHH----C-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHHHH
Q 045674          502 ILINGMFKEHRNEEALKLWDMMID----K-GITPT-AASFRALSIGLCLSGKVARACKILDELAPKGII------PETAF  569 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~----~-~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~  569 (650)
                      .++.+|...|++++|+.+++++++    . +..+. ..++..++.+|...|++++|..+++++++....      -..++
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            888899999999999999999884    1 11112 236788999999999999999999998853211      36789


Q ss_pred             HHHHHHHHHcCC-HHHHHHHHHHHHHc
Q 045674          570 EDMITCLCKTGR-IKEACKLADGIVDR  595 (650)
Q Consensus       570 ~~l~~~~~~~g~-~~~A~~~~~~~~~~  595 (650)
                      ..++.++...|+ +++|.+.+++++..
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~i  266 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASFF  266 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence            999999999994 79999999998753

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=99.00  E-value=5.6e-08  Score=91.59  Aligned_cols=193  Identities=9%  Similarity=0.013  Sum_probs=164.1

Q ss_pred             HHcCCHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          438 GKAGRVD-EAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK----------LDEALALFKRMEDEGCDQTVYTYTILING  506 (650)
Q Consensus       438 ~~~~~~~-~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  506 (650)
                      .+.|.++ +|+..++.++..+ |.+..+|+.-..++...+.          +++++.+++.++...++ +..+|+.-..+
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~n-P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3455544 8999999999986 6778888877776665554          68899999999988665 88899888888


Q ss_pred             HHhcC--CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc----
Q 045674          507 MFKEH--RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK-VARACKILDELAPKGIIPETAFEDMITCLCKT----  579 (650)
Q Consensus       507 ~~~~~--~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----  579 (650)
                      +...+  .+++++.+++++++..+. |...|..-.+++...|. +++++++++++++.+|.+..+|+..+.++...    
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~  196 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP  196 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence            88888  489999999999988766 88899988888989998 69999999999999999999999999888876    


Q ss_pred             ----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCC
Q 045674          580 ----------GRIKEACKLADGIVDREREIPGKIRTALINALRKA-----------GNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       580 ----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~~~~  634 (650)
                                +.++++++.+++++..+ |.|..+|+.+...+.+.           +.++++++.++++++..|+.
T Consensus       197 ~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~pd~  271 (331)
T 3dss_A          197 DSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELEPEN  271 (331)
T ss_dssp             ------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             ccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhCccc
Confidence                      56899999999999987 88999998877777666           56899999999999988865

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=99.00  E-value=1.9e-08  Score=86.21  Aligned_cols=130  Identities=9%  Similarity=-0.027  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          463 YCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGL  542 (650)
Q Consensus       463 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  542 (650)
                      ..+..++..+...|++++|...|++..+..+. +...+..++.++...|++++|...++++++..+. +...+..++.++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            45666777777888888888888888776443 6777778888888888888888888888876443 677788888888


Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH--HHHHHcCCHHHHHHHHHHHHH
Q 045674          543 CLSGKVARACKILDELAPKGIIPETAFEDMI--TCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~--~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      ...|++++|...++++.+..+.+...+..+.  ..+...|++++|++.+++...
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~  145 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS  145 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence            8888888888888888888777766664444  447778888888888877653

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=99.00  E-value=1.8e-08  Score=81.35  Aligned_cols=115  Identities=16%  Similarity=0.169  Sum_probs=65.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ...+..++..+...|++++|..+++++.+..+. +...+..++..+...|++++|..+++++.+..+.+...+..++.++
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~   87 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence            344555555555566666666666655544322 4455555566666666666666666666655555555666666666


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIRTALINALRK  613 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (650)
                      ...|++++|...++++++.. +.+...+..++.++..
T Consensus        88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~  123 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQK  123 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHh
Confidence            66666666666666666554 4455555555555443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=99.00  E-value=2.7e-09  Score=86.63  Aligned_cols=102  Identities=14%  Similarity=0.114  Sum_probs=75.1

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-------GKIRT  605 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~  605 (650)
                      ..+..++..+.+.|++++|+..|+++++.+|.+..+|..++.+|...|++++|++.++++++.+ +.+       ..++.
T Consensus         9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~   87 (127)
T 4gcn_A            9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVG-RETRADYKLIAKAMS   87 (127)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhC-cccchhhHHHHHHHH
Confidence            3456677777888888888888888887777777788888888888888888888888877653 111       23566


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCh
Q 045674          606 ALINALRKAGNADLAIKLMHSKIGVGYDRM  635 (650)
Q Consensus       606 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  635 (650)
                      .++.++...|++++|++.|+++++..+.|+
T Consensus        88 ~lg~~~~~~~~~~~A~~~~~kal~~~~~~~  117 (127)
T 4gcn_A           88 RAGNAFQKQNDLSLAVQWFHRSLSEFRDPE  117 (127)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSCCHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCcCHH
Confidence            677777888888888888888887665544

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.99  E-value=9.1e-10  Score=97.81  Aligned_cols=135  Identities=13%  Similarity=-0.006  Sum_probs=95.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---------------HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT---------------AASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~---------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      ...+..++..+...|++++|+..|+++++......               ...+..++.++...|++++|+..++++++.
T Consensus        38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~  117 (198)
T 2fbn_A           38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI  117 (198)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            33455556666666777777777776665432211               267778888888999999999999999988


Q ss_pred             CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH-HHHHHHHHCCC
Q 045674          562 GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI-KLMHSKIGVGY  632 (650)
Q Consensus       562 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~~~  632 (650)
                      .+.+..++..++.++...|++++|++.|+++++.. +.+..++..+..++...|+.+++. ..+..+..++.
T Consensus       118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~~  188 (198)
T 2fbn_A          118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKGP  188 (198)
T ss_dssp             STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC--------------
T ss_pred             CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            88888899999999999999999999999998886 667888888888888888887777 56666665543

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.97  E-value=5e-09  Score=84.12  Aligned_cols=98  Identities=11%  Similarity=-0.003  Sum_probs=81.9

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA  614 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (650)
                      +..++..+.+.|++++|+..++++++..|.+..++..++.++...|++++|+..++++++.+ |.+..++..++.+|...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence            45667778888999999999999998888888888899999999999999999999998886 66788888889999999


Q ss_pred             CCHHHHHHHHHHHHHCCCC
Q 045674          615 GNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       615 g~~~~A~~~~~~~~~~~~~  633 (650)
                      |++++|+..++++++..+.
T Consensus        99 g~~~~A~~~~~~al~~~P~  117 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQPQ  117 (121)
T ss_dssp             HHHHHHHHHHHHHHC----
T ss_pred             CCHHHHHHHHHHHHHhCcC
Confidence            9999999999998887664

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.97  E-value=2.7e-09  Score=88.79  Aligned_cols=105  Identities=13%  Similarity=-0.025  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...+..++..+...|++++|+..|++++...+. +...+..++.++...|++++|+..|++++..+|.++..+..++.+
T Consensus        17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   95 (142)
T 2xcb_A           17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAEC   95 (142)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHH
Confidence            3455666777788889999999999888876554 777888888889999999999999999998888888888899999


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          576 LCKTGRIKEACKLADGIVDREREIPGK  602 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~  602 (650)
                      +...|++++|++.|+++++.. +.++.
T Consensus        96 ~~~~g~~~~A~~~~~~al~~~-p~~~~  121 (142)
T 2xcb_A           96 HLQLGDLDGAESGFYSARALA-AAQPA  121 (142)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH-HTCGG
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCcc
Confidence            999999999999999988775 33433

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.96  E-value=7.9e-09  Score=88.44  Aligned_cols=107  Identities=10%  Similarity=0.013  Sum_probs=86.5

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++++.++.+..++..++.+
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~   88 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence            4567777888888888888888888888876544 677888888888888888888888888888888888888888888


Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045674          576 LCKTGRIKEACKLADGIVDREREIPGKIR  604 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~  604 (650)
                      +...|++++|++.|+++++.. +.+...+
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~  116 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAE-GNGGSDA  116 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHH-SSSCCHH
T ss_pred             HHHccCHHHHHHHHHHHHHhC-CCchHHH
Confidence            888888888888888888775 4444433

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.96  E-value=2.6e-08  Score=91.00  Aligned_cols=198  Identities=11%  Similarity=-0.071  Sum_probs=136.2

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHHcCCHHHHHHHHHHHHHc------------CCC-----
Q 045674          404 KNERLEEAMQYFEFCRANGVAVNAMFYSSL-------IDGLGKAGRVDEAEELFEEMVEK------------GCP-----  459 (650)
Q Consensus       404 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~A~~~~~~~~~~------------~~~-----  459 (650)
                      ..++...|.+.|.++....+. ....|..+       ...+...++..+++..+...++.            |..     
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~   96 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY   96 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence            467777788888777777665 55666655       45555555555555555554441            100     


Q ss_pred             ---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--HHH
Q 045674          460 ---RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT--AAS  534 (650)
Q Consensus       460 ---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~--~~~  534 (650)
                         .-......++..+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  ...
T Consensus        97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a  173 (282)
T 4f3v_A           97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA  173 (282)
T ss_dssp             ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred             ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence               002344556777888899999998888887654  333356666677888999999999888665431 111  346


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCC--CC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKG--II-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      +..++.++...|++++|+..|+++....  |. ..+.....+.++.+.|+.++|..+|+++...+  |+..++..|
T Consensus       174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~--P~~~~~~aL  247 (282)
T 4f3v_A          174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTH--PEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS--CCHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcHHHHHHH
Confidence            7788888999999999999999987543  33 55678888999999999999999999998875  345555444

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.95  E-value=4.4e-09  Score=98.94  Aligned_cols=196  Identities=11%  Similarity=0.025  Sum_probs=134.7

Q ss_pred             CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          391 DEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLID  470 (650)
Q Consensus       391 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  470 (650)
                      +...+..+...+...|++++|+..|+.+....+. +...|..++.+|...|++++|+..++++++.. +.+...+..++.
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~   80 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ   80 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence            3456666777788888888888888888776554 77788888888888888999988888888874 667888888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          471 ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR  550 (650)
Q Consensus       471 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  550 (650)
                      +|...|++++|+..|+++.+..+. +...+...+....+   ..++. .+..........+......+...  ..|++++
T Consensus        81 ~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~~i~~~l~~l--~~~~~~~  153 (281)
T 2c2l_A           81 CQLEMESYDEAIANLQRAYSLAKE-QRLNFGDDIPSALR---IAKKK-RWNSIEERRIHQESELHSYLTRL--IAAERER  153 (281)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHH-TTCCCCSHHHHHHH---HHHHH-HHHHHHHTCCCCCCHHHHHHHHH--HHHHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCcc-chhhHHHHHHHHHH---HHHHH-HHHHHHHHHHhhhHHHHHHHHHH--HHHHHHH
Confidence            899999999999988888764321 10011111111111   11111 12222233344455554444433  3689999


Q ss_pred             HHHHHHHHhhCCCCcHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHc
Q 045674          551 ACKILDELAPKGIIPETAFEDMITCLCKT-GRIKEACKLADGIVDR  595 (650)
Q Consensus       551 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~  595 (650)
                      |++.++++.+..+.+......+...+.+. +.+++|.++|+++.+.
T Consensus       154 A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          154 ELEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             HHTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             HHHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            99999999998887777777777777666 6789999999988753

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.95  E-value=1.1e-08  Score=91.10  Aligned_cols=155  Identities=10%  Similarity=-0.075  Sum_probs=74.5

Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHhcCCHH
Q 045674          475 CGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK----GIT-PTAASFRALSIGLCLSGKVA  549 (650)
Q Consensus       475 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-p~~~~~~~l~~~~~~~g~~~  549 (650)
                      .|++++|.+.++.+... +......+..+...+...|++++|...++++.+.    +.. .....+..++..+...|+++
T Consensus         5 ~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~   83 (203)
T 3gw4_A            5 AHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWD   83 (203)
T ss_dssp             --CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHH
Confidence            44555555533332221 1123444455555555555555555555554431    111 12234455555555666666


Q ss_pred             HHHHHHHHHhhC---CC-C---cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHhcCCH
Q 045674          550 RACKILDELAPK---GI-I---PETAFEDMITCLCKTGRIKEACKLADGIVDRER-EIP----GKIRTALINALRKAGNA  617 (650)
Q Consensus       550 ~A~~~~~~~~~~---~~-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~----~~~~~~l~~~~~~~g~~  617 (650)
                      +|.+.++++.+.   .. .   ...++..++.++...|++++|.+.++++++... ..+    ..++..++.++...|++
T Consensus        84 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~  163 (203)
T 3gw4_A           84 AARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNL  163 (203)
T ss_dssp             HHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCH
Confidence            666666555542   11 1   123455566666666666666666666553210 011    12335556666666666


Q ss_pred             HHHHHHHHHHHHC
Q 045674          618 DLAIKLMHSKIGV  630 (650)
Q Consensus       618 ~~A~~~~~~~~~~  630 (650)
                      ++|+..++++++.
T Consensus       164 ~~A~~~~~~al~~  176 (203)
T 3gw4_A          164 LEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665553

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.94  E-value=2.2e-08  Score=79.86  Aligned_cols=103  Identities=13%  Similarity=0.021  Sum_probs=59.7

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      ..+..++..+...|++++|...++++....+.+...+..++.++...|++++|...++++++.. +.+...+..++.++.
T Consensus         5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~   83 (118)
T 1elw_A            5 NELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALE   83 (118)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            3444555555556666666666666655555555556666666666666666666666665554 445555555666666


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCChh
Q 045674          613 KAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       613 ~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      ..|++++|++.++++++.++....
T Consensus        84 ~~~~~~~A~~~~~~~~~~~~~~~~  107 (118)
T 1elw_A           84 FLNRFEEAKRTYEEGLKHEANNPQ  107 (118)
T ss_dssp             HTTCHHHHHHHHHHHHTTCTTCHH
T ss_pred             HHhhHHHHHHHHHHHHHcCCCCHH
Confidence            666666666666666655554433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.94  E-value=9.8e-09  Score=89.19  Aligned_cols=123  Identities=9%  Similarity=0.017  Sum_probs=70.9

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH-HHHcCCH--HHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC-LCKTGRI--KEA  585 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~A  585 (650)
                      ..|++++|...+++.++..+. +...+..++.++...|++++|...|+++.+..+.+..++..++.+ +...|++  ++|
T Consensus        22 ~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~A  100 (177)
T 2e2e_A           22 SQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQT  100 (177)
T ss_dssp             -----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred             hccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHHH
Confidence            345566666666665554332 455566666666666666666666666666555555666666666 5556665  666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          586 CKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +..++++++.+ +.+..++..++.+|...|++++|+..++++++..+.
T Consensus       101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~  147 (177)
T 2e2e_A          101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLNSP  147 (177)
T ss_dssp             HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCT
T ss_pred             HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCC
Confidence            66666666554 445555666666666666666666666666665554

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.91  E-value=3.1e-08  Score=95.79  Aligned_cols=133  Identities=12%  Similarity=0.010  Sum_probs=102.2

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQT--------------VYTYTILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      +...+..++..|.+.|++++|+..|++.++..+...              ...|..++.+|...|++++|+..++++++.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            344555566666666666666666666665533311              567888888888899999999999998886


Q ss_pred             CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 045674          527 GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA-CKLADGIVD  594 (650)
Q Consensus       527 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  594 (650)
                      .+. +...+..++.+|...|++++|+..|+++++..|.+..++..++.++...|++++| ..+|+++..
T Consensus       226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~  293 (336)
T 1p5q_A          226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE  293 (336)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            544 7788888899999999999999999999988888888999999999999998888 456666654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.91  E-value=6.7e-08  Score=77.91  Aligned_cols=117  Identities=16%  Similarity=0.181  Sum_probs=84.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ...+..++..+...|++++|.+.++++.+..+ .+...+..++..+...|++++|..+++++.+..+. +...+..++.+
T Consensus         9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~   86 (125)
T 1na0_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNA   86 (125)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHH
Confidence            45666677777777777777777777776543 25666777777777777777777777777765433 56677777777


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG  580 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  580 (650)
                      +...|++++|..+++++.+..+.+...+..++.++...|
T Consensus        87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  125 (125)
T 1na0_A           87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG  125 (125)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred             HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence            888888888888888887777777777777777665543

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.91  E-value=2.5e-08  Score=81.64  Aligned_cols=121  Identities=12%  Similarity=0.020  Sum_probs=93.5

Q ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          459 PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRAL  538 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l  538 (650)
                      +.+...+..++..+.+.|++++|...|++..+..+. +...+..++.++...|++++|+..++++.+..+. +...+..+
T Consensus        13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l   90 (133)
T 2lni_A           13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLEPT-FIKGYTRK   90 (133)
T ss_dssp             SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-chHHHHHH
Confidence            345567777788888888888888888888776433 6777777888888888888888888888875443 67778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          539 SIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      +.++...|++++|.+.++++.+..+.+...+..++.++...|+
T Consensus        91 a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           91 AAALEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence            8888888888888888888888777777778888887776654

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.90  E-value=5.1e-08  Score=77.74  Aligned_cols=112  Identities=13%  Similarity=0.034  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+.+...+..++.++
T Consensus         4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~   82 (118)
T 1elw_A            4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL   82 (118)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence            445666677777777888888777777765433 5667777777777888888888888888877777777888888888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      ...|++++|.+.++++++.+ +.+...+..+..+
T Consensus        83 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  115 (118)
T 1elw_A           83 EFLNRFEEAKRTYEEGLKHE-ANNPQLKEGLQNM  115 (118)
T ss_dssp             HHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHh
Confidence            88888888888888887765 5556666555543

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.90  E-value=2.5e-07  Score=87.74  Aligned_cols=164  Identities=9%  Similarity=0.003  Sum_probs=115.5

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CC--HH
Q 045674          430 YSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDS------YCYNVLIDALAKCGKLDEALALFKRMEDEGCD---QT--VY  498 (650)
Q Consensus       430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~--~~  498 (650)
                      +...+..+...|++++|.+.+.+..+.. +...      ..+..++..+...|++++|+..+++..+....   +.  ..
T Consensus        78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           78 FKDQVIMLCKQKRYKEIYNKVWNELKKE-EYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHhccc-cCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3445566677777777777777776643 1221      22344566677778888888888887753211   12  45


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHH---CCCC-C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMID---KGIT-P--TAASFRALSIGLCLSGKVARACKILDELAPKGII------PE  566 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~-p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~  566 (650)
                      +|+.++..|...|++++|...++++.+   .... +  ...++..++.+|...|++++|..+++++++....      -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            788888888888999999988888872   2111 1  1257788888999999999999999988753211      26


Q ss_pred             HHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 045674          567 TAFEDMITCLCKTGRIKEA-CKLADGIVD  594 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~~  594 (650)
                      .++..++.++...|++++| ...+++++.
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            7788899999999999999 777888764

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.90  E-value=2.2e-08  Score=82.57  Aligned_cols=99  Identities=11%  Similarity=-0.032  Sum_probs=48.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      +...+..++..+...|++++|...|+++++..+. +...+..++.++...|++++|...++++++.++.+..++..++.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence            3444444455555555555555555555443322 344444455555555555555555555554444444455555555


Q ss_pred             HHHcCCHHHHHHHHHHHHHc
Q 045674          576 LCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       576 ~~~~g~~~~A~~~~~~~~~~  595 (650)
                      +...|++++|+..|+++++.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHH
Confidence            55555555555555554443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.90  E-value=4.1e-08  Score=79.98  Aligned_cols=120  Identities=9%  Similarity=-0.006  Sum_probs=89.8

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI  540 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  540 (650)
                      +...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+. +...+..++.
T Consensus        11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~   88 (131)
T 2vyi_A           11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGL   88 (131)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHH
Confidence            4456667777777778888888888777766433 6677777777777888888888888887765433 5667777888


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674          541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI  582 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  582 (650)
                      ++...|++++|...++++.+..+.+...+..++.++...|++
T Consensus        89 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           89 ALSSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence            888888888888888888887777777888888887777653

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.88  E-value=3.1e-08  Score=84.72  Aligned_cols=104  Identities=8%  Similarity=-0.080  Sum_probs=56.6

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ...+..++..+.+.|++++|+..|++.++..+. +...|..++.+|...|++++|+..++++++..+. +...+..++.+
T Consensus        11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   88 (164)
T 3sz7_A           11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGLA   88 (164)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            344555555555555555555555555554332 4555555555555555555555555555554333 44555555555


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPET  567 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~  567 (650)
                      +...|++++|...|+++++..+.+..
T Consensus        89 ~~~~g~~~~A~~~~~~al~~~p~~~~  114 (164)
T 3sz7_A           89 RFDMADYKGAKEAYEKGIEAEGNGGS  114 (164)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHSSSCC
T ss_pred             HHHccCHHHHHHHHHHHHHhCCCchH
Confidence            55555555555555555555554333

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.88  E-value=3.5e-08  Score=79.94  Aligned_cols=108  Identities=12%  Similarity=0.057  Sum_probs=82.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-------HHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------ETAF  569 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~  569 (650)
                      ..++..++..+.+.|++++|+..|+++++..+. +...+..++.+|...|++++|++.++++++.++..       ..++
T Consensus         8 A~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~   86 (127)
T 4gcn_A            8 AIAEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM   86 (127)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence            345667777888888888888888888876544 67778888888888888888888888887654431       3467


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          570 EDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      ..++.++...|++++|++.|+++++.  .|++.....+
T Consensus        87 ~~lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~~~l  122 (127)
T 4gcn_A           87 SRAGNAFQKQNDLSLAVQWFHRSLSE--FRDPELVKKV  122 (127)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHHHHH
Confidence            78899999999999999999999876  4666655444

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.87  E-value=1.3e-08  Score=80.40  Aligned_cols=102  Identities=12%  Similarity=-0.007  Sum_probs=82.2

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREI--PGKIRTALIN  609 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~  609 (650)
                      ...+..++..+...|++++|...++++.+..+.+..++..++.++...|++++|++.++++++.. +.  +..++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence            34566677778888888888888888888777778888888888888888888888888888775 55  6778888888


Q ss_pred             HHHhc-CCHHHHHHHHHHHHHCCCCC
Q 045674          610 ALRKA-GNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       610 ~~~~~-g~~~~A~~~~~~~~~~~~~~  634 (650)
                      ++... |++++|++.++++++..+.+
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~p~~  110 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEHHHH  110 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGCCCC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcccCC
Confidence            88888 88888888888888877654

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.87  E-value=7e-09  Score=85.27  Aligned_cols=102  Identities=15%  Similarity=0.076  Sum_probs=69.2

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------cH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGII-------PE-----TAFEDMITCLCKTGRIKEACKLADGIVDR-------  595 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  595 (650)
                      +...+..+...|++++|+..|+++++..|.       +.     .+|..++.++.+.|++++|+..++++++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            344455555566666666666666655444       22     27777777888888888888888877776       


Q ss_pred             CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674          596 EREIPGKIR----TALINALRKAGNADLAIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       596 ~~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  637 (650)
                      + |.+...|    ...+.++...|++++|+..|+++++..+...+.
T Consensus        94 ~-pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~  138 (159)
T 2hr2_A           94 N-QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE  138 (159)
T ss_dssp             T-STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred             C-CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence            5 5566677    777888888888888888888888765554333

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.86  E-value=5.9e-08  Score=78.62  Aligned_cols=97  Identities=13%  Similarity=0.034  Sum_probs=68.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      ..|..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|+..++++++.+|.+...+..++.++.
T Consensus         5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~   83 (126)
T 3upv_A            5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence            44555666666777777777777777665433 56667777777777777777777777777777777777777777777


Q ss_pred             HcCCHHHHHHHHHHHHHc
Q 045674          578 KTGRIKEACKLADGIVDR  595 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~  595 (650)
                      ..|++++|++.|+++++.
T Consensus        84 ~~~~~~~A~~~~~~al~~  101 (126)
T 3upv_A           84 AVKEYASALETLDAARTK  101 (126)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHHh
Confidence            777777777777777665

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.85  E-value=4.5e-08  Score=80.68  Aligned_cols=102  Identities=12%  Similarity=0.087  Sum_probs=81.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      +...+..++..+...|++++|...|++++...+.+..++..++.++...|++++|+..++++++.+ +.+..++..++.+
T Consensus         8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~   86 (137)
T 3q49_B            8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC   86 (137)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence            566777788888888888888888888888777778888888888888888888888888888776 6677788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCC
Q 045674          611 LRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       611 ~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      |...|++++|+..++++++..+.
T Consensus        87 ~~~~~~~~~A~~~~~~a~~~~p~  109 (137)
T 3q49_B           87 QLEMESYDEAIANLQRAYSLAKE  109 (137)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhHHHHHHHHHHHHHHChh
Confidence            88888888888888888876554

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.84  E-value=4.4e-08  Score=79.77  Aligned_cols=92  Identities=10%  Similarity=0.055  Sum_probs=43.2

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHH
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDKGITPTA---ASFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCL  576 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~  576 (650)
                      ++..+...|++++|...|+++++..+. +.   ..+..++.++...|++++|...++++++..|.+   ..++..++.++
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~   86 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ   86 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence            334444455555555555555443222 11   234444444555555555555555555444443   44444455555


Q ss_pred             HHcCCHHHHHHHHHHHHHc
Q 045674          577 CKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~  595 (650)
                      ...|++++|+..++++++.
T Consensus        87 ~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           87 YGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHH
Confidence            5555555555555555444

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.84  E-value=5.9e-08  Score=86.33  Aligned_cols=156  Identities=15%  Similarity=-0.018  Sum_probs=92.3

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHhcCCH
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE----GC-DQTVYTYTILINGMFKEHRN  513 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~~~~  513 (650)
                      ..|++++|.++++.+... ......++..++..+...|++++|...+++..+.    +. .....++..+...+...|++
T Consensus         4 ~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~   82 (203)
T 3gw4_A            4 EAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW   82 (203)
T ss_dssp             ---CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred             ccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence            355666666644333221 1234455666666666666666666666665541    11 11234566666677777777


Q ss_pred             HHHHHHHHHHHHC----CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--cHHHHHHHHHHHHHcCC
Q 045674          514 EEALKLWDMMIDK----GITP--TAASFRALSIGLCLSGKVARACKILDELAPK----GII--PETAFEDMITCLCKTGR  581 (650)
Q Consensus       514 ~~A~~~~~~~~~~----~~~p--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~  581 (650)
                      ++|...+++..+.    +..+  ....+..++..+...|++++|...++++.+.    +..  ...++..++.++...|+
T Consensus        83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~  162 (203)
T 3gw4_A           83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN  162 (203)
T ss_dssp             HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence            7777777766642    1111  1234666777777788888888888777642    111  12345778888888888


Q ss_pred             HHHHHHHHHHHHHc
Q 045674          582 IKEACKLADGIVDR  595 (650)
Q Consensus       582 ~~~A~~~~~~~~~~  595 (650)
                      +++|.+.++++++.
T Consensus       163 ~~~A~~~~~~al~~  176 (203)
T 3gw4_A          163 LLEAQQHWLRARDI  176 (203)
T ss_dssp             HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHH
Confidence            88888888877654

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.84  E-value=9.5e-08  Score=79.85  Aligned_cols=98  Identities=18%  Similarity=0.022  Sum_probs=46.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT----AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFED  571 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  571 (650)
                      +...+..++..+...|++++|...|+++.+.  .|+    ...+..++.++...|++++|...++++.+..+.+...+..
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~  104 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYR  104 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHH
Confidence            3444444444445555555555555554443  222    3344444444444555555555555544444444444444


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          572 MITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++.++...|++++|.+.|+++++.
T Consensus       105 ~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          105 RSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc
Confidence            455555555555555555544444

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.83  E-value=3.1e-08  Score=84.45  Aligned_cols=100  Identities=13%  Similarity=0.071  Sum_probs=56.7

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--------CC--------CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDK--------GI--------TP-TAASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--------~~--------~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      ...+...+..+.+.|++++|+..|+++++.        .+        .| +...+..++.++.+.|++++|+..+++++
T Consensus        11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al   90 (162)
T 3rkv_A           11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL   90 (162)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence            345555666666666777776666666653        00        00 12345555555555566666666666655


Q ss_pred             hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +.+|.+..++..++.++...|++++|+..|+++++.+
T Consensus        91 ~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~  127 (162)
T 3rkv_A           91 KREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH  127 (162)
T ss_dssp             HHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred             hcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence            5555555555555666666666666666666555553

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.83  E-value=7.8e-09  Score=91.71  Aligned_cols=155  Identities=12%  Similarity=0.045  Sum_probs=102.7

Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHH
Q 045674          438 GKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQT---------------VYTYTI  502 (650)
Q Consensus       438 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---------------~~~~~~  502 (650)
                      ...|+++++.+.++...... ......+..++..+...|++++|+..|++.++......               ...+..
T Consensus        15 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~   93 (198)
T 2fbn_A           15 ENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLN   93 (198)
T ss_dssp             -------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHH
T ss_pred             hhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHH
Confidence            33444555544443222210 12334456666667777777777777777766432211               267888


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI  582 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  582 (650)
                      ++.++...|++++|+..++++++..+. +...+..++.++...|++++|.+.|+++++..|.+..++..++.++...|+.
T Consensus        94 la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~  172 (198)
T 2fbn_A           94 LATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEA  172 (198)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHH
Confidence            888899999999999999999886443 7788889999999999999999999999998888999999999999888888


Q ss_pred             HHHH-HHHHHHHH
Q 045674          583 KEAC-KLADGIVD  594 (650)
Q Consensus       583 ~~A~-~~~~~~~~  594 (650)
                      +++. ..+..+..
T Consensus       173 ~~~~~~~~~~~f~  185 (198)
T 2fbn_A          173 RKKDKLTFGGMFD  185 (198)
T ss_dssp             HC-----------
T ss_pred             HHHHHHHHHHHhc
Confidence            7776 55555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.81  E-value=3.6e-07  Score=94.45  Aligned_cols=174  Identities=10%  Similarity=0.013  Sum_probs=149.3

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGK----------LDEALALFKRMEDEGCDQTVYTYTILINGMFKEH  511 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----------~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  511 (650)
                      .-++|++.++.++... |.+..+|+....++...|+          ++++++.++++.+..++ +..+|+.-..++.+.+
T Consensus        44 ~~eeal~~~~~~l~~n-P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGAN-PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            3467788888888875 6778888888888887777          89999999999988766 8888888888888888


Q ss_pred             --CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc---------
Q 045674          512 --RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSG-KVARACKILDELAPKGIIPETAFEDMITCLCKT---------  579 (650)
Q Consensus       512 --~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  579 (650)
                        +++++++.++++++..+. +..+|..-.+++.+.| .+++++++++++++.++.+..+|...+.++...         
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhccccccccc
Confidence              779999999999987666 8888988888888888 899999999999999999999999999888874         


Q ss_pred             -----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          580 -----GRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADL  619 (650)
Q Consensus       580 -----g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~  619 (650)
                           +.+++|++++++++..+ |.+..+|..+...+.+.+++++
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred             ccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence                 56899999999999987 7889999999999888887555

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.79  E-value=1.6e-07  Score=78.41  Aligned_cols=111  Identities=14%  Similarity=0.065  Sum_probs=86.3

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      +...+..++..+...|++++|.+.|+++.+..+.+   ..++..++.++...|++++|++.++++++.. +.+..++..+
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~  105 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR  105 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence            56677778888888888888888888888877765   6777888888888888888888888888775 5567778888


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          608 INALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       608 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      +.++...|++++|+..++++++..+........+.
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~  140 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALR  140 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHH
Confidence            88888888888888888888887776555444433

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.77  E-value=6e-08  Score=77.74  Aligned_cols=96  Identities=11%  Similarity=-0.027  Sum_probs=80.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT  579 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  579 (650)
                      +..++..+...|++++|+..++++++..+. +...+..++.++...|++++|+..++++++.+|.+..++..++.++...
T Consensus        20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~   98 (121)
T 1hxi_A           20 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE   98 (121)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence            445667778889999999999988876554 7778888888899999999999999999988888888889999999999


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 045674          580 GRIKEACKLADGIVDRE  596 (650)
Q Consensus       580 g~~~~A~~~~~~~~~~~  596 (650)
                      |++++|+..++++++.+
T Consensus        99 g~~~~A~~~~~~al~~~  115 (121)
T 1hxi_A           99 HNANAALASLRAWLLSQ  115 (121)
T ss_dssp             HHHHHHHHHHHHHHC--
T ss_pred             CCHHHHHHHHHHHHHhC
Confidence            99999999999988654

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.75  E-value=8.9e-08  Score=96.84  Aligned_cols=143  Identities=12%  Similarity=0.025  Sum_probs=83.0

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHH
Q 045674          442 RVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQT--------------VYTYTILINGM  507 (650)
Q Consensus       442 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~l~~~~  507 (650)
                      ++++|...|+...+.. +.....+..++..|.+.|++++|+..|+++++..+...              ...|..+..+|
T Consensus       249 ~~~~A~~~~~~~~~~~-~~~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~  327 (457)
T 1kt0_A          249 SFEKAKESWEMDTKEK-LEQAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCY  327 (457)
T ss_dssp             EEECCCCGGGSCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcccCcchhhcCHHHH-HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHH
Confidence            3444544444333321 23566778888888889999999999888887533311              35555555555


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          508 FKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       508 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      .+.|++++|+..++++++..+. +...+..++.+|...|++++|+..|+++++..|.+..++..++.++...|++++|.
T Consensus       328 ~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~  405 (457)
T 1kt0_A          328 LKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD  405 (457)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence            5666666666666665554333 45555555555666666666666666666555555555555555555555555544

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.74  E-value=9.3e-08  Score=77.85  Aligned_cols=110  Identities=14%  Similarity=0.110  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-------HHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------ETAFE  570 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~  570 (650)
                      ..+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|..+++++.+..+.+       ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence            34555555666666666666666666654322 45555566666666666666666666665543332       45555


Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          571 DMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      .++.++...|++++|.+.++++++..  |+...+..+..+
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~  121 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA  121 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence            66666666666666666666666543  344444444433

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.72  E-value=4.1e-07  Score=73.87  Aligned_cols=103  Identities=11%  Similarity=-0.099  Sum_probs=78.3

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHH
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGRIKEACKLADGIVDREREIP---GKIRTALI  608 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~~l~  608 (650)
                      +..++..+...|++++|...++++.+..|.+.   .++..++.++...|++++|+..++++++.. +.+   ..++..++
T Consensus         5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la   83 (129)
T 2xev_A            5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG   83 (129)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence            34566677788888888888888887766655   677788888888888888888888888765 444   66677788


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674          609 NALRKAGNADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       609 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      .++...|++++|+..++++++..+......
T Consensus        84 ~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~  113 (129)
T 2xev_A           84 LSQYGEGKNTEAQQTLQQVATQYPGSDAAR  113 (129)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTTSHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCCChHHH
Confidence            888888888888888888888776654433

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.71  E-value=1.3e-07  Score=77.02  Aligned_cols=100  Identities=12%  Similarity=0.050  Sum_probs=69.4

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-------GKIRT  605 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~  605 (650)
                      ..+..++..+...|++++|..+++++.+..+.+..++..++.++...|++++|...++++++.. +.+       ..++.
T Consensus         5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~   83 (131)
T 1elr_A            5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYA   83 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhc-cccchhHHHHHHHHH
Confidence            4456666677777777777777777777666667777777777777777777777777776653 222       55666


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          606 ALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       606 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .++.++...|++++|++.++++++..+.
T Consensus        84 ~la~~~~~~~~~~~A~~~~~~~~~~~~~  111 (131)
T 1elr_A           84 RIGNSYFKEEKYKDAIHFYNKSLAEHRT  111 (131)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCC
Confidence            7777777777777777777777776553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.71  E-value=1.5e-07  Score=91.92  Aligned_cols=141  Identities=8%  Similarity=-0.091  Sum_probs=105.7

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          462 SYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIG  541 (650)
Q Consensus       462 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~  541 (650)
                      ...+..++..+.+.|++++|+..|+++++.-  +..          ......++       ..+.. ..+...+..++.+
T Consensus       223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~~~-------~~~~~-~~~~~~~~nla~~  282 (370)
T 1ihg_A          223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAEDAD-------GAKLQ-PVALSCVLNIGAC  282 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCHHH-------HGGGH-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccChHH-------HHHHH-HHHHHHHHHHHHH
Confidence            4567778888888888888888888877630  000          00111111       11111 1145678888899


Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      +.+.|++++|++.++++++..+.+..++..++.+|...|++++|++.|+++++.. +.+..++..+..++...++.+++.
T Consensus       283 ~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~  361 (370)
T 1ihg_A          283 KLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE  361 (370)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999999999888889999999999999999999999999999886 667888888888888888887775


Q ss_pred             HH
Q 045674          622 KL  623 (650)
Q Consensus       622 ~~  623 (650)
                      +.
T Consensus       362 k~  363 (370)
T 1ihg_A          362 KA  363 (370)
T ss_dssp             HC
T ss_pred             HH
Confidence            43

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=98.70  E-value=9.5e-08  Score=81.41  Aligned_cols=96  Identities=16%  Similarity=0.087  Sum_probs=48.8

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhC------------------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 045674          537 ALSIGLCLSGKVARACKILDELAPK------------------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE  598 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~------------------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  598 (650)
                      ..+..+.+.|++++|+..|++++..                  .+....++..++.++.+.|++++|+..++++++.+ +
T Consensus        16 ~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p   94 (162)
T 3rkv_A           16 QKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE-E   94 (162)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-T
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-C
Confidence            3444455555555555555555543                  22233455555555555555555555555555544 4


Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          599 IPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       599 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+..+|..++.+|...|++++|+..++++++..+.
T Consensus        95 ~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~  129 (162)
T 3rkv_A           95 TNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPA  129 (162)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGG
T ss_pred             cchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCC
Confidence            44455555555555555555555555555555444

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.69  E-value=2.5e-08  Score=79.55  Aligned_cols=87  Identities=15%  Similarity=0.128  Sum_probs=46.0

Q ss_pred             cCCHHHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHH
Q 045674          510 EHRNEEALKLWDMMIDKGI--TPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       510 ~~~~~~A~~~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      .|++++|+..|+++++.+.  +.+...+..++.++...|++++|+..++++++.+|.+..++..++.++...|++++|++
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~   82 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE   82 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence            3555556666666555421  11234455555555556666666666666655555555555556666666666666666


Q ss_pred             HHHHHHHcC
Q 045674          588 LADGIVDRE  596 (650)
Q Consensus       588 ~~~~~~~~~  596 (650)
                      .++++++..
T Consensus        83 ~~~~al~~~   91 (117)
T 3k9i_A           83 LLLKIIAET   91 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhC
Confidence            665555543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.69  E-value=9e-07  Score=91.46  Aligned_cols=162  Identities=8%  Similarity=-0.034  Sum_probs=142.1

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHR----------NEEALKLWDMMIDKGITPTAASFRALSIGLCLSG  546 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  546 (650)
                      ..++|++.+++++..++. +..+|+.-..++...|+          ++++++.++++++..++ +..+|..-.+++.+.|
T Consensus        44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            346889999999998765 77888887777777777          99999999999988776 8889999999999999


Q ss_pred             --CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------
Q 045674          547 --KVARACKILDELAPKGIIPETAFEDMITCLCKTG-RIKEACKLADGIVDREREIPGKIRTALINALRKA---------  614 (650)
Q Consensus       547 --~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---------  614 (650)
                        ++++++++++++.+.++.+..+|..-+.++...| .++++++.++++++.+ +.+..+|...+.++.+.         
T Consensus       122 ~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          122 EPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             cccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhccccccccc
Confidence              7799999999999999999999999999999999 8999999999999987 77899999998888774         


Q ss_pred             -----CCHHHHHHHHHHHHHCCCCC-hhhhhhh
Q 045674          615 -----GNADLAIKLMHSKIGVGYDR-MGSIKRR  641 (650)
Q Consensus       615 -----g~~~~A~~~~~~~~~~~~~~-~~~~~~~  641 (650)
                           +.+++|++.++++++..|.. ..+.|..
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~  233 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPNDQSAWFYHR  233 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHH
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCCCccHHHHHH
Confidence                 56899999999999999984 4444443

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.69  E-value=3.3e-08  Score=100.45  Aligned_cols=118  Identities=13%  Similarity=0.059  Sum_probs=75.9

Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      .+...|++++|++.++++++..+. +...+..++.++.+.|++++|++.++++++..+.+..++..++.++...|++++|
T Consensus        15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHH
Confidence            345566777777777776665333 4666667777777777777777777777777666677777777777777777777


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCCHHHHHHHHH
Q 045674          586 CKLADGIVDREREIPGKIRTALINA--LRKAGNADLAIKLMH  625 (650)
Q Consensus       586 ~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  625 (650)
                      ++.++++++.. +.+..++..++.+  +.+.|++++|++.++
T Consensus        94 ~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHS-TTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            77777777664 4455555555555  666677777777766

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.68  E-value=1.4e-07  Score=74.36  Aligned_cols=99  Identities=10%  Similarity=-0.025  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC--cHHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII--PETAFEDMIT  574 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~  574 (650)
                      ...+..++..+...|++++|...++++.+..+. +...+..++.++...|++++|...++++.+..+.  +..++..++.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~   84 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD   84 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence            345566667777777888888888777765433 5667777788888888888888888888887777  7788888888


Q ss_pred             HHHHc-CCHHHHHHHHHHHHHcC
Q 045674          575 CLCKT-GRIKEACKLADGIVDRE  596 (650)
Q Consensus       575 ~~~~~-g~~~~A~~~~~~~~~~~  596 (650)
                      ++... |++++|++.++++++..
T Consensus        85 ~~~~~~~~~~~A~~~~~~~~~~~  107 (112)
T 2kck_A           85 ALRYIEGKEVEAEIAEARAKLEH  107 (112)
T ss_dssp             HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred             HHHHHhCCHHHHHHHHHHHhhcc
Confidence            88888 88888888888887764

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.65  E-value=5e-08  Score=94.35  Aligned_cols=154  Identities=9%  Similarity=-0.065  Sum_probs=90.6

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSI  540 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~  540 (650)
                      ....+..++..+.+.|++++|+..|++.++..  |+...       +...++.+++...+.          ...+..++.
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            35567778888888899999999998888752  33221       223344444433221          136788899


Q ss_pred             HHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHhcCCHHH
Q 045674          541 GLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA-LRKAGNADL  619 (650)
Q Consensus       541 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~  619 (650)
                      ++.+.|++++|+..++++++.++.+..++..++.+|...|++++|+..|+++++.. +.+..++..+... ....+..++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999988899999999999999999999999999999876 5667777777776 345677889


Q ss_pred             HHHHHHHHHHCCCCC
Q 045674          620 AIKLMHSKIGVGYDR  634 (650)
Q Consensus       620 A~~~~~~~~~~~~~~  634 (650)
                      +...|+++++..+..
T Consensus       318 a~~~~~~~l~~~p~~  332 (338)
T 2if4_A          318 QKEMYKGIFKGKDEG  332 (338)
T ss_dssp             ---------------
T ss_pred             HHHHHHHhhCCCCCC
Confidence            999999999887654

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.64  E-value=1.7e-07  Score=79.74  Aligned_cols=132  Identities=11%  Similarity=0.049  Sum_probs=81.7

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC------cHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AASFRALSIGLCLSGKVARACKILDELAPKGII------PET  567 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~------~~~  567 (650)
                      ++..++..+...|++++|...++++.+.... ++    ..++..++..+...|++++|.++++++.+....      ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            3444555555555555555555555432100 01    134556666677777777777777776643211      244


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--C---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDRER--E---IPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ++..++.++...|++++|.+.++++++...  .   ....++..++..+...|++++|++.++++++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            567778888888888888888887765410  0   11345677788888888888888888887764

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.62  E-value=5.3e-08  Score=77.64  Aligned_cols=92  Identities=14%  Similarity=0.105  Sum_probs=73.1

Q ss_pred             hcCCHHHHHHHHHHHhhCC---CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          544 LSGKVARACKILDELAPKG---IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLA  620 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  620 (650)
                      ..|++++|+..|+++++.+   +.+..++..++.++...|++++|++.++++++.. |.+..++..++.++...|++++|
T Consensus         2 ~~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A   80 (117)
T 3k9i_A            2 VLGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF-PNHQALRVFYAMVLYNLGRYEQG   80 (117)
T ss_dssp             -----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred             CCCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHcCCHHHH
Confidence            3578888899999988874   4467788888999999999999999999988886 66788888888889999999999


Q ss_pred             HHHHHHHHHCCCCChh
Q 045674          621 IKLMHSKIGVGYDRMG  636 (650)
Q Consensus       621 ~~~~~~~~~~~~~~~~  636 (650)
                      +..++++++..+....
T Consensus        81 ~~~~~~al~~~p~~~~   96 (117)
T 3k9i_A           81 VELLLKIIAETSDDET   96 (117)
T ss_dssp             HHHHHHHHHHHCCCHH
T ss_pred             HHHHHHHHHhCCCcHH
Confidence            9999998888776443

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.62  E-value=5.3e-07  Score=91.16  Aligned_cols=150  Identities=11%  Similarity=0.002  Sum_probs=108.4

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---------------HHHHHHHHH
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRD---------------SYCYNVLID  470 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~---------------~~~~~~l~~  470 (650)
                      +++++|+..|+......+. ....+..+...+.+.|++++|+..|+++++.. +.+               ..+|..++.
T Consensus       248 ~~~~~A~~~~~~~~~~~~~-~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~-p~~~~~~~~~~~~~~~~~~~~~~nla~  325 (457)
T 1kt0_A          248 KSFEKAKESWEMDTKEKLE-QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWL-EMEYGLSEKESKASESFLLAAFLNLAM  325 (457)
T ss_dssp             EEEECCCCGGGSCHHHHHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-TTCCSCCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhcccCcchhhcCHHHHHH-HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh-cccccCChHHHHHHHHHHHHHHHHHHH
Confidence            3444555444333322211 45667778888888999999999999888863 333               578888888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          471 ALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR  550 (650)
Q Consensus       471 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~  550 (650)
                      +|.+.|++++|+..++++++..+. +...|..++.+|...|++++|+..|+++++..+. +...+..++.++.+.|++++
T Consensus       326 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~  403 (457)
T 1kt0_A          326 CYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNE  403 (457)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999988887554 7888888888889999999999999998876443 55677788888888888877


Q ss_pred             HHH-HHHHHh
Q 045674          551 ACK-ILDELA  559 (650)
Q Consensus       551 A~~-~~~~~~  559 (650)
                      |.+ .+..+.
T Consensus       404 a~~~~~~~~f  413 (457)
T 1kt0_A          404 RDRRIYANMF  413 (457)
T ss_dssp             HHHHHHHHC-
T ss_pred             HHHHHHHHHH
Confidence            764 444444

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.60  E-value=2.6e-06  Score=85.88  Aligned_cols=96  Identities=5%  Similarity=-0.095  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhC--CCC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----H
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPK--GII----PETAFEDMITCLCKTGRIKEACKLADGIVDRE--REIP----G  601 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~----~  601 (650)
                      ++..++..+...|++++|..+++++...  +..    ...++..++.+|...|++++|..++++++...  .+.+    .
T Consensus       137 ~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  216 (434)
T 4b4t_Q          137 LSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVA  216 (434)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHH
Confidence            4444555555555555555555554421  000    23445555555555555555555555544321  0111    1


Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          602 KIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      ..+..++..+...|++++|...+.++++
T Consensus       217 ~~~~~~g~~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          217 ELDLMSGILHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence            2333444444555555555555555443

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=98.59  E-value=6.8e-07  Score=73.46  Aligned_cols=97  Identities=13%  Similarity=-0.056  Sum_probs=74.6

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC------CH-----HHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------
Q 045674          500 YTILINGMFKEHRNEEALKLWDMMIDKGITP------TA-----ASFRALSIGLCLSGKVARACKILDELAPK-------  561 (650)
Q Consensus       500 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p------~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------  561 (650)
                      +...+..+...|++++|+..|+++++..+..      +.     ..|..++.++...|++++|+..++++++.       
T Consensus        14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~   93 (159)
T 2hr2_A           14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL   93 (159)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence            3444555566666666666666666543221      22     37788888888888888888888888888       


Q ss_pred             CCCcHHHH----HHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          562 GIIPETAF----EDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       562 ~~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +|.+...|    ...+.++...|++++|+..|+++++..
T Consensus        94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~  132 (159)
T 2hr2_A           94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMI  132 (159)
T ss_dssp             TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence            88888899    999999999999999999999999874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.57  E-value=3.3e-07  Score=93.07  Aligned_cols=117  Identities=11%  Similarity=0.038  Sum_probs=59.9

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA  551 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A  551 (650)
                      +.+.|++++|++.++++++..+. +...|..++.+|...|++++|+..++++++..+. +...+..++.+|...|++++|
T Consensus        16 ~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~-~~~~~~~lg~~~~~~g~~~eA   93 (477)
T 1wao_1           16 YFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKFRAA   93 (477)
T ss_dssp             TTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHHTCHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHH
Confidence            44455555555555555554322 4555555555555555555555555555554332 444555555555555555555


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 045674          552 CKILDELAPKGIIPETAFEDMITC--LCKTGRIKEACKLAD  590 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~  590 (650)
                      .+.++++++..+.+..++..++.+  +.+.|++++|++.++
T Consensus        94 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           94 LRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            555555555555544455545444  555555555555555

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.54  E-value=1.4e-07  Score=77.25  Aligned_cols=87  Identities=10%  Similarity=-0.063  Sum_probs=52.1

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH----------HHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          509 KEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV----------ARACKILDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                      +.+++++|++.+++.++..+. +...+..++.++...|++          ++|+..|+++++.+|....+|..++.+|..
T Consensus        14 r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~   92 (158)
T 1zu2_A           14 RILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS   92 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence            445566666666666665444 556666666666655543          366666666666666666666666666665


Q ss_pred             cC-----------CHHHHHHHHHHHHHcC
Q 045674          579 TG-----------RIKEACKLADGIVDRE  596 (650)
Q Consensus       579 ~g-----------~~~~A~~~~~~~~~~~  596 (650)
                      .|           ++++|++.|+++++.+
T Consensus        93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~  121 (158)
T 1zu2_A           93 FAFLTPDETEAKHNFDLATQFFQQAVDEQ  121 (158)
T ss_dssp             HHHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred             hcccCcchhhhhccHHHHHHHHHHHHHhC
Confidence            53           5666666666666553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=98.54  E-value=8.6e-07  Score=86.58  Aligned_cols=142  Identities=8%  Similarity=-0.079  Sum_probs=107.3

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      ....+..+...+.+.|++++|+..|+++++..  +..          ......       +...+.. ..+...|..+..
T Consensus       222 ~a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~--~~~----------~~~~~~-------~~~~~~~-~~~~~~~~nla~  281 (370)
T 1ihg_A          222 ISEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV--EGS----------RAAAED-------ADGAKLQ-PVALSCVLNIGA  281 (370)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--HHH----------HHHSCH-------HHHGGGH-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh--hcC----------ccccCh-------HHHHHHH-HHHHHHHHHHHH
Confidence            35568888999999999999999999988731  100          001111       1111111 114567788888


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEA  585 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  585 (650)
                      +|.+.|++++|+..++++++..+. +...+..++.+|...|++++|++.|+++.+..|.+..++..+..++...++.+++
T Consensus       282 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a  360 (370)
T 1ihg_A          282 CKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDK  360 (370)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999999886544 6778888999999999999999999999998888888888899888888888777


Q ss_pred             HHH
Q 045674          586 CKL  588 (650)
Q Consensus       586 ~~~  588 (650)
                      .+.
T Consensus       361 ~k~  363 (370)
T 1ihg_A          361 EKA  363 (370)
T ss_dssp             HHC
T ss_pred             HHH
Confidence            653

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.50  E-value=7.7e-07  Score=75.48  Aligned_cols=132  Identities=13%  Similarity=0.012  Sum_probs=86.0

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CC----HH
Q 045674          464 CYNVLIDALAKCGKLDEALALFKRMEDEGCD-QT----VYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PT----AA  533 (650)
Q Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~----~~  533 (650)
                      ++..++..|...|++++|+..+++..+.... .+    ..++..++..+...|++++|...++++.+.... .+    ..
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455555666666666666666655442110 01    135566666777777777777777776642100 11    34


Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKG----II--PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .+..++.++...|++++|.++++++.+..    ..  ....+..++.++...|++++|.+.++++++.
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~  158 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            56677788888888888888888877431    11  2456778899999999999999999988764

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.50  E-value=3.5e-06  Score=69.08  Aligned_cols=113  Identities=9%  Similarity=-0.011  Sum_probs=84.8

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHH
Q 045674          511 HRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEAC  586 (650)
Q Consensus       511 ~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~  586 (650)
                      +++++|+..|++..+.|. ++..    ++..|...+.+++|.++|+++.+.+  +......|+.+|..    .+++++|.
T Consensus         9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            466778888888877762 2333    6666777777788888888887763  67777788888877    77888888


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045674          587 KLADGIVDREREIPGKIRTALINALRK----AGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  633 (650)
                      ++|+++.+.+   ++..+..++..|..    .+++++|+++++++.+.|..
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~  129 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  129 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence            8888888764   56677778888887    78888888888888887653

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.45  E-value=1.5e-05  Score=80.26  Aligned_cols=199  Identities=12%  Similarity=-0.015  Sum_probs=124.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674          363 LIDSYAKLGSMNEAINIFERMKYEGVEPD----------------EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVN  426 (650)
Q Consensus       363 l~~~~~~~~~~~~A~~~~~~~~~~~~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  426 (650)
                      -+..+.+.|++++|++.|.++.+......                ...+..++..|...|++++|.+.+..+........
T Consensus        10 ~a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~   89 (434)
T 4b4t_Q           10 EARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFA   89 (434)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcc
Confidence            35567788999999999988887532211                12356677778888888888888876654321111


Q ss_pred             -H----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC
Q 045674          427 -A----MFYSSLIDGLGKAGRVDEAEELFEEMVEK----G-CPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE--GCD  494 (650)
Q Consensus       427 -~----~~~~~l~~~~~~~~~~~~A~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~  494 (650)
                       .    .+.+.+...+...|++++|..+++.....    + ...-..++..++..|...|++++|..+++++...  +..
T Consensus        90 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~  169 (434)
T 4b4t_Q           90 KSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLD  169 (434)
T ss_dssp             HHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSS
T ss_pred             chHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcc
Confidence             1    12333334444567788888887776542    1 1122456677777888888888888887776543  111


Q ss_pred             ---CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CC-CCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          495 ---QTVYTYTILINGMFKEHRNEEALKLWDMMIDK--GI-TPT---AASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       495 ---~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~-~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                         ....++..++..|...|++++|..++++....  .+ .|.   ...+..++..+...|++++|...+.++.+.
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~~  245 (434)
T 4b4t_Q          170 DKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFES  245 (434)
T ss_dssp             CSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHH
T ss_pred             cchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence               12346667777777888888888887776631  11 111   234455566666777888888777777653

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.44  E-value=1.3e-07  Score=74.53  Aligned_cols=94  Identities=14%  Similarity=0.137  Sum_probs=71.1

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC------HHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP------GKIR  604 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~------~~~~  604 (650)
                      +...+..++..+...|++++|.+.++++++..|.+..++..++.++...|++++|++.++++++.. +.+      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence            455677778888888888888888888888878888888888888888888888888888888765 444      5566


Q ss_pred             HHHHHHHHhcCCHHHHHHHHH
Q 045674          605 TALINALRKAGNADLAIKLMH  625 (650)
Q Consensus       605 ~~l~~~~~~~g~~~~A~~~~~  625 (650)
                      ..++.++...|++++|+..++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~  102 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVD  102 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHH
Confidence            666777776666665554443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=98.44  E-value=4.9e-07  Score=87.36  Aligned_cols=151  Identities=12%  Similarity=0.069  Sum_probs=90.5

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          426 NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       426 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      ....+..+...+.+.|++++|+..|++++...  |+...       +...|+++++...+.          ...|..+..
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            35567788888999999999999999998863  43321       223344444443321          136788889


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH-HHcCCHHH
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL-CKTGRIKE  584 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~~~  584 (650)
                      +|.+.|++++|+..++++++..+. +...+..++.+|...|++++|...|+++++..|.+..++..+..+. ...+..++
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999986544 7888999999999999999999999999999888888888888774 45567888


Q ss_pred             HHHHHHHHHHcC
Q 045674          585 ACKLADGIVDRE  596 (650)
Q Consensus       585 A~~~~~~~~~~~  596 (650)
                      +.++|++++...
T Consensus       318 a~~~~~~~l~~~  329 (338)
T 2if4_A          318 QKEMYKGIFKGK  329 (338)
T ss_dssp             ------------
T ss_pred             HHHHHHHhhCCC
Confidence            899999998764

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=98.38  E-value=1.1e-06  Score=72.16  Aligned_cols=95  Identities=11%  Similarity=-0.010  Sum_probs=77.6

Q ss_pred             HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          543 CLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRI----------KEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       543 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      .+.+.+++|++.++++++.+|.+.+.|..++.++...|++          ++|+..|+++++.+ |.+..+|..++.+|.
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay~   91 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAYT   91 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHH
Confidence            4557788889999999888888888888888888888764          58999999998887 677888888888888


Q ss_pred             hcC-----------CHHHHHHHHHHHHHCCCCChhhh
Q 045674          613 KAG-----------NADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       613 ~~g-----------~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      ..|           ++++|++.|+++++..+......
T Consensus        92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~  128 (158)
T 1zu2_A           92 SFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYL  128 (158)
T ss_dssp             HHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             HhcccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHH
Confidence            774           88999999999998877754433

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.38  E-value=3.6e-06  Score=66.57  Aligned_cols=80  Identities=11%  Similarity=-0.036  Sum_probs=52.8

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          515 EALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD  594 (650)
Q Consensus       515 ~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  594 (650)
                      +|+..++++++..+. +...+..++.++...|++++|+..++++++.++.+...+..++.++...|++++|+..|+++++
T Consensus         3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            355666666655433 5566666666677777777777777777766666666666677777777777777777776665


Q ss_pred             c
Q 045674          595 R  595 (650)
Q Consensus       595 ~  595 (650)
                      .
T Consensus        82 ~   82 (115)
T 2kat_A           82 A   82 (115)
T ss_dssp             H
T ss_pred             h
Confidence            4

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.37  E-value=3.9e-06  Score=62.92  Aligned_cols=83  Identities=17%  Similarity=0.157  Sum_probs=62.0

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      ...+..++..+...|++++|..+++++++..+.+..++..++.++...|++++|++.++++++.. +.+..++..++.++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence            44566677777778888888888888877777777777788888888888888888888887765 55677777777766


Q ss_pred             HhcC
Q 045674          612 RKAG  615 (650)
Q Consensus       612 ~~~g  615 (650)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            6543

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=98.31  E-value=6.1e-06  Score=65.21  Aligned_cols=82  Identities=11%  Similarity=0.007  Sum_probs=62.0

Q ss_pred             HHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          550 RACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       550 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      +|+..|+++++..|.+...+..++.++...|++++|+..++++++.+ +.+...|..++.+|...|++++|+..++++++
T Consensus         3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~   81 (115)
T 2kat_A            3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA   81 (115)
T ss_dssp             CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            46677777777777777777777888888888888888888777765 55677777777777778888888888877777


Q ss_pred             CCC
Q 045674          630 VGY  632 (650)
Q Consensus       630 ~~~  632 (650)
                      ..+
T Consensus        82 ~~~   84 (115)
T 2kat_A           82 AAQ   84 (115)
T ss_dssp             HHH
T ss_pred             hcc
Confidence            644

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=98.23  E-value=9.6e-07  Score=69.34  Aligned_cols=95  Identities=13%  Similarity=0.093  Sum_probs=69.0

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc------HHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP------ETAF  569 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------~~~~  569 (650)
                      +...+..++..+...|++++|+..|+++++..+. +...+..++.++...|++++|++.++++++..+.+      ..++
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~   81 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQ   81 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHH
Confidence            4456667777777788888888888887775443 66777778888888888888888888888777765      6667


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHH
Q 045674          570 EDMITCLCKTGRIKEACKLADG  591 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~  591 (650)
                      ..++.++...|++++|++.+++
T Consensus        82 ~~~~~~~~~~~~~~~a~~~~~~  103 (111)
T 2l6j_A           82 YRLELAQGAVGSVQIPVVEVDE  103 (111)
T ss_dssp             HHHHHHHHHHHCCCCCSSSSSS
T ss_pred             HHHHHHHHHHHhHhhhHhHHHH
Confidence            7777777777776666555443

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.22  E-value=1.4e-05  Score=80.44  Aligned_cols=95  Identities=7%  Similarity=-0.122  Sum_probs=48.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAP-----KGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDR-----EREIP  600 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~  600 (650)
                      +++.++.+|...|++++|..+++++++     .|+..   ...++.|+.+|...|++++|+.+++++++.     | +..
T Consensus       353 ~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG-~~H  431 (490)
T 3n71_A          353 LLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHG-PSH  431 (490)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTC-TTS
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhC-CCC
Confidence            445555555555555555555555442     23332   234555555556666666665555555432     2 122


Q ss_pred             ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          601 ---GKIRTALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       601 ---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                         ..+...+..++...|++++|...|+++.+
T Consensus       432 p~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~  463 (490)
T 3n71_A          432 PITKDLEAMRMQTEMELRMFRQNEFMYHKMRE  463 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence               12333455555555666666666665554

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=98.21  E-value=6e-05  Score=61.60  Aligned_cols=111  Identities=8%  Similarity=-0.052  Sum_probs=75.4

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHH
Q 045674          476 GKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARA  551 (650)
Q Consensus       476 g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A  551 (650)
                      +++++|++.|++..+.|. ++..    |...|...+..++|++.|++..+.|   +......++..|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            356667777777766652 2332    5555556666677777777777653   55666677777766    6777777


Q ss_pred             HHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 045674          552 CKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDRE  596 (650)
Q Consensus       552 ~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  596 (650)
                      .++|+++.+.+  ++.....|+.+|..    .+++++|.++|+++.+.+
T Consensus        81 ~~~~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g  127 (138)
T 1klx_A           81 AQYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  127 (138)
T ss_dssp             HHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence            77777777653  56677777777777    777888888888777765

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.19  E-value=9.8e-06  Score=62.03  Aligned_cols=65  Identities=12%  Similarity=0.032  Sum_probs=49.6

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      +...+..++.++...|++++|++.|+++++.+|.+..+|..++.++...|++++|++.|+++++.
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l   70 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV   70 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55667777777777788888888888777777777777777777777788888887777777654

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=98.15  E-value=2.3e-05  Score=58.59  Aligned_cols=83  Identities=14%  Similarity=0.148  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Q 045674          497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCL  576 (650)
Q Consensus       497 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~  576 (650)
                      ...+..+...+...|++++|+..++++++..+. +...+..++.++...|++++|...++++.+..|.+..++..++.++
T Consensus         9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~   87 (91)
T 1na3_A            9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPN-NAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAK   87 (91)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence            445666677777777777777777777765433 5667777777888888888888888888877777777777777777


Q ss_pred             HHcC
Q 045674          577 CKTG  580 (650)
Q Consensus       577 ~~~g  580 (650)
                      ...|
T Consensus        88 ~~~g   91 (91)
T 1na3_A           88 QKQG   91 (91)
T ss_dssp             HHHC
T ss_pred             HhcC
Confidence            6544

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=98.13  E-value=3.2e-05  Score=77.83  Aligned_cols=124  Identities=9%  Similarity=0.007  Sum_probs=93.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHH
Q 045674          472 LAKCGKLDEALALFKRMEDE-----GCD-Q-TVYTYTILINGMFKEHRNEEALKLWDMMID-----KGIT-PT-AASFRA  537 (650)
Q Consensus       472 ~~~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~  537 (650)
                      +..+|++++|+.++++.++.     |.. | ...+++.|+.+|...|++++|..+++++++     .|.. |+ ..+++.
T Consensus       319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n  398 (490)
T 3n71_A          319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR  398 (490)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred             HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence            55678888888888777552     211 1 345778888888888898888888888764     2333 22 346788


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          538 LSIGLCLSGKVARACKILDELAP-----KGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      |+..|...|++++|..+++++++     .|++.   .+....+..++...|.+++|..+|+++.+.
T Consensus       399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            89999999999999999998874     56663   355677888888999999999999998764

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=98.09  E-value=4.8e-06  Score=63.67  Aligned_cols=88  Identities=11%  Similarity=0.073  Sum_probs=65.2

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGIIPET-AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG  615 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  615 (650)
                      ..+..+...|++++|...++++++..+.+.. ++..++.++...|++++|++.|+++++.+ +.+..++..        +
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~--------~   75 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN-PDSPALQAR--------K   75 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHH--------H
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHH--------H
Confidence            3456677888888888888888888787777 88888888888888888888888888876 445554421        5


Q ss_pred             CHHHHHHHHHHHHHCCCC
Q 045674          616 NADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       616 ~~~~A~~~~~~~~~~~~~  633 (650)
                      .+.+|...++++.+..+.
T Consensus        76 ~~~~a~~~~~~~~~~~p~   93 (99)
T 2kc7_A           76 MVMDILNFYNKDMYNQLE   93 (99)
T ss_dssp             HHHHHHHHHCCTTHHHHC
T ss_pred             HHHHHHHHHHHHhccCcc
Confidence            566677777666655444

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=98.04  E-value=2.5e-05  Score=59.71  Aligned_cols=68  Identities=15%  Similarity=-0.015  Sum_probs=45.0

Q ss_pred             CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045674          563 IIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       563 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  631 (650)
                      |.+..++..++.++...|++++|++.|+++++.+ +.+..+|..++.+|...|++++|++.++++++..
T Consensus         4 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~   71 (100)
T 3ma5_A            4 PEDPFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVA   71 (100)
T ss_dssp             -CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhh
Confidence            4456666667777777777777777777776665 5556666666777777777777777777666553

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.93  E-value=8.1e-05  Score=55.49  Aligned_cols=66  Identities=18%  Similarity=0.080  Sum_probs=39.6

Q ss_pred             CHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          531 TAASFRALSIGLCLSGK---VARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +...+..++.++...++   .++|..+++++++.+|.+......++..+...|++++|+..|+++++.+
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~   73 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN   73 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence            45555555555544333   4666666666666666666666666666666666666666666666554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.88  E-value=0.00012  Score=69.11  Aligned_cols=73  Identities=11%  Similarity=0.003  Sum_probs=59.8

Q ss_pred             hCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          560 PKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       560 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      ..++.++.++..++..+...|++++|+..+++++..+  |+...|..++..+.-.|++++|++.+++++..+|.+
T Consensus       271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~  343 (372)
T 3ly7_A          271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA  343 (372)
T ss_dssp             GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred             ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            3445578888888888888899999999999998886  677777788888888999999999999998887764

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.82  E-value=0.0015  Score=58.99  Aligned_cols=91  Identities=9%  Similarity=0.044  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHc-----CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhc-CCHH
Q 045674          548 VARACKILDELAPKGII--PETAFEDMITCLCKT-----GRIKEACKLADGIVDREREI-PGKIRTALINALRKA-GNAD  618 (650)
Q Consensus       548 ~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~~  618 (650)
                      ..+|...++++++.++.  +...|..++..|...     |+.++|.+.|+++++.+ +. +..++..++..++.. |+++
T Consensus       179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~Ln-P~~~id~~v~YA~~l~~~~gd~~  257 (301)
T 3u64_A          179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYC-SAHDPDHHITYADALCIPLNNRA  257 (301)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHC-CTTCSHHHHHHHHHTTTTTTCHH
T ss_pred             HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhC-CCCCchHHHHHHHHHHHhcCCHH
Confidence            57888889999998888  778899999998885     89999999999999887 33 478888888888774 8999


Q ss_pred             HHHHHHHHHHHCCCC--Chhhhh
Q 045674          619 LAIKLMHSKIGVGYD--RMGSIK  639 (650)
Q Consensus       619 ~A~~~~~~~~~~~~~--~~~~~~  639 (650)
                      +|.+.+++++...+.  |+..+-
T Consensus       258 ~a~~~L~kAL~a~p~~~P~~~la  280 (301)
T 3u64_A          258 GFDEALDRALAIDPESVPHNKLL  280 (301)
T ss_dssp             HHHHHHHHHHHCCGGGCSSCHHH
T ss_pred             HHHHHHHHHHcCCCCCCCChhHH
Confidence            999999999998887  655443

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.81  E-value=8.2e-05  Score=60.18  Aligned_cols=83  Identities=17%  Similarity=0.132  Sum_probs=58.3

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHhhCC-CC-cHHHHHHHHHHHHHcCCHHHHHH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSG---KVARACKILDELAPKG-II-PETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      ...+.+.|.+..+.+. ++..+...+++++++.+   ++++++.+|+.+.+.+ |. ..+.+..++.++.+.|++++|++
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHH
Confidence            4455666666666554 47777777777777777   5567777777777765 42 56677777777777788888888


Q ss_pred             HHHHHHHcC
Q 045674          588 LADGIVDRE  596 (650)
Q Consensus       588 ~~~~~~~~~  596 (650)
                      +++.+++..
T Consensus        93 y~~~lL~ie  101 (152)
T 1pc2_A           93 YVRGLLQTE  101 (152)
T ss_dssp             HHHHHHHHC
T ss_pred             HHHHHHhcC
Confidence            887777764

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.71  E-value=0.074  Score=56.83  Aligned_cols=27  Identities=19%  Similarity=0.313  Sum_probs=19.8

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045674          254 TYNTMIKGYCKVGKTQKAMEKFRAMEA  280 (650)
Q Consensus       254 ~~~~l~~~~~~~g~~~~A~~~~~~~~~  280 (650)
                      -|..+++++.+.++.+.+.++|.++..
T Consensus       232 dy~~a~~~ai~LnD~~li~~if~~l~~  258 (963)
T 4ady_A          232 DYLTLNKVVVNLNDAGLALQLFKKLKE  258 (963)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred             hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            455666777777888888888888764

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=97.65  E-value=0.00043  Score=51.50  Aligned_cols=71  Identities=13%  Similarity=-0.003  Sum_probs=61.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          562 GIIPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       562 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+.++.++..++.++...++   .++|..+++++++.+ |.+..++..++..+.+.|++++|+..|+++++..+.
T Consensus         2 ~p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~   75 (93)
T 3bee_A            2 NAVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP   75 (93)
T ss_dssp             CCCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred             CCCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence            35678888999999876665   789999999999987 778889999999999999999999999999998777

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=97.65  E-value=0.00048  Score=55.72  Aligned_cols=90  Identities=10%  Similarity=0.112  Sum_probs=64.5

Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHhcCCHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMITCLCKTG---RIKEACKLADGIVDREREI--PGKIRTALINALRKAGNADLAI  621 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~  621 (650)
                      ....+.+.|.+....++.+.++...+++++++.+   +.++++.+++...+.+ .|  +...+..++-+|.+.|++++|+
T Consensus        13 ~l~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           13 DLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            3455666677766666777777778888888877   5667888888877764 23  4567777777788888888888


Q ss_pred             HHHHHHHHCCCCChhh
Q 045674          622 KLMHSKIGVGYDRMGS  637 (650)
Q Consensus       622 ~~~~~~~~~~~~~~~~  637 (650)
                      ++++.+++..|.....
T Consensus        92 ~y~~~lL~ieP~n~QA  107 (152)
T 1pc2_A           92 KYVRGLLQTEPQNNQA  107 (152)
T ss_dssp             HHHHHHHHHCTTCHHH
T ss_pred             HHHHHHHhcCCCCHHH
Confidence            8888888877765433

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.65  E-value=0.00019  Score=55.10  Aligned_cols=75  Identities=9%  Similarity=0.066  Sum_probs=56.8

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC-------CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674          531 TAASFRALSIGLCLSGKVARACKILDELAPK-------GIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKI  603 (650)
Q Consensus       531 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  603 (650)
                      +..-...++..+...|+++.|..+|+.+.+.       ++....++..++.++.+.|++++|+.+++++++.. |.+..+
T Consensus         4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~-P~~~~~   82 (104)
T 2v5f_A            4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA   82 (104)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHH
Confidence            5556677888888888999999888888753       23466788888888888888888888888888775 555554


Q ss_pred             HHH
Q 045674          604 RTA  606 (650)
Q Consensus       604 ~~~  606 (650)
                      ...
T Consensus        83 ~~n   85 (104)
T 2v5f_A           83 NGN   85 (104)
T ss_dssp             HHH
T ss_pred             Hhh
Confidence            433

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.61  E-value=0.00022  Score=70.50  Aligned_cols=87  Identities=6%  Similarity=-0.078  Sum_probs=46.3

Q ss_pred             hcCCHHHHHHHHHHHHH---CCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHHHHHHH
Q 045674          509 KEHRNEEALKLWDMMID---KGITPT----AASFRALSIGLCLSGKVARACKILDELAP-----KGIIP---ETAFEDMI  573 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~---~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~~~~l~  573 (650)
                      ..|++++|..++++.++   .-+.|+    ..+++.++.+|...|++++|+.+++++++     .|+..   ...++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            45666666666666553   111111    23455566666666666666666666553     23332   23355555


Q ss_pred             HHHHHcCCHHHHHHHHHHHHHc
Q 045674          574 TCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      .+|...|++++|+.+++++++.
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~i  411 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIAI  411 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHHH
Confidence            5555555555555555555543

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=97.60  E-value=0.00036  Score=52.91  Aligned_cols=67  Identities=22%  Similarity=0.214  Sum_probs=59.6

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674          571 DMITCLCKTGRIKEACKLADGIVDREREIPGK-IRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       571 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      ..+..+...|++++|++.++++++.. +.+.. ++..++.+|...|++++|++.++++++..+......
T Consensus         5 ~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~   72 (99)
T 2kc7_A            5 KTIKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ   72 (99)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence            46778899999999999999999986 66778 999999999999999999999999999988755443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=97.57  E-value=0.0011  Score=50.79  Aligned_cols=76  Identities=8%  Similarity=-0.037  Sum_probs=41.4

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhh
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDRE------REIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKR  640 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  640 (650)
                      .-...+|..+...|+++.|+..++.+++..      -.....++..++.++.+.|++++|+..++++++..|.......+
T Consensus         6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~n   85 (104)
T 2v5f_A            6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN   85 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHhh
Confidence            334455666666666666666666655431      01234455556666666666666666666666655554444444


Q ss_pred             hh
Q 045674          641 RV  642 (650)
Q Consensus       641 ~~  642 (650)
                      +.
T Consensus        86 ~~   87 (104)
T 2v5f_A           86 LK   87 (104)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=97.55  E-value=0.13  Score=54.94  Aligned_cols=272  Identities=12%  Similarity=0.085  Sum_probs=146.2

Q ss_pred             HHHhcCChHHHHHHHHHHHHcC--CCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--C-----CCHHhHHHHHHH
Q 045674          331 GLCKVGKCIEGHAIFESMIRRG--CQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGV--E-----PDEVTYGVIISG  401 (650)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~-----p~~~~~~~l~~~  401 (650)
                      +.+..|+.+++..++...+..+  -.+.+..-..+.-+....|..+++..++.......-  .     +....-..+.-+
T Consensus       383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG  462 (963)
T 4ady_A          383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG  462 (963)
T ss_dssp             HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred             hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence            4556777788877777665421  122233334445555666665677887777654311  0     111112223223


Q ss_pred             HHhcCC-HHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH--HHHHHHHHcCC
Q 045674          402 LCKNER-LEEAMQYFEFCRANGVAV-NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYN--VLIDALAKCGK  477 (650)
Q Consensus       402 ~~~~g~-~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~g~  477 (650)
                      ++-.|. -+++.+.+..+....-.. ....-..+...+...|+-+....++..+.+..   +..+..  .+.-++...|+
T Consensus       463 la~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~  539 (963)
T 4ady_A          463 LAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGR  539 (963)
T ss_dssp             HHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTC
T ss_pred             HHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCC
Confidence            333332 245666666655542110 01112234444556788877778877777642   333333  33444456788


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674          478 LDEALALFKRMEDEGCDQTVYTY--TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKIL  555 (650)
Q Consensus       478 ~~~A~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~  555 (650)
                      .+.+..+++.+... ..|....-  ..++.+|+..|+.....+++..+.+.. ..+..-...++-++...|+.+.+.+++
T Consensus       540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv  617 (963)
T 4ady_A          540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV  617 (963)
T ss_dssp             GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred             hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence            88888888887764 12222211  234456778899887777988888642 223333334444555567776667777


Q ss_pred             HHHhhCCCCcHHHHHHHHHH--HHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          556 DELAPKGIIPETAFEDMITC--LCKTGR-IKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       556 ~~~~~~~~~~~~~~~~l~~~--~~~~g~-~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      +.+.+.+  ++.+-...+.+  ....|+ ..+|+..+..+..   .++..+....+.++.
T Consensus       618 ~~L~~~~--d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~Vrq~Ai~ALG  672 (963)
T 4ady_A          618 QLLSKSH--NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFVRQAAMIALS  672 (963)
T ss_dssp             TTGGGCS--CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHHHHHHHHHHH
T ss_pred             HHHHhcC--CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHHHHHHHHHHH
Confidence            6665543  34443333333  333444 3678888888874   355555544444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=97.50  E-value=0.0091  Score=53.97  Aligned_cols=105  Identities=14%  Similarity=0.078  Sum_probs=80.9

Q ss_pred             HHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhc-----CCHHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHc-CCH
Q 045674          513 NEEALKLWDMMIDKGITPT---AASFRALSIGLCLS-----GKVARACKILDELAPKGII-PETAFEDMITCLCKT-GRI  582 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~-g~~  582 (650)
                      ...|...++++++.  .|+   ...+..++..|...     |+.++|.++|+++++.+|. +..++..+++.++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            46788888888885  555   55788899889884     9999999999999999997 589999999999985 999


Q ss_pred             HHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          583 KEACKLADGIVDRERE--IPGKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       583 ~~A~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      ++|.+++++++..+..  |+....+        .+.-.+|..++.++
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan--------~~~q~eA~~LL~~~  295 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLV--------ILSQKRARWLKAHV  295 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHH--------HHHHHHHHHHHHTH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHH--------HHHHHHHHHHHHHh
Confidence            9999999999987533  3333222        23335666665544

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.48  E-value=0.00082  Score=66.52  Aligned_cols=92  Identities=11%  Similarity=-0.046  Sum_probs=46.4

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHhh-----CCCCc---HHH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDK---GITPT----AASFRALSIGLCLSGKVARACKILDELAP-----KGIIP---ETA  568 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~---~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~---~~~  568 (650)
                      +..+...|++++|+.+++++++.   -+.|+    ..+++.++.+|...|++++|+.++++++.     .|+..   ...
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            33344556666666666665532   11111    23445555555556666666666555542     23332   233


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          569 FEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       569 ~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++.|+.+|...|++++|+.+++++++.
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~i  400 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFDI  400 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHH
Confidence            455555555555555555555555544

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=97.46  E-value=0.0021  Score=60.72  Aligned_cols=66  Identities=12%  Similarity=0.018  Sum_probs=29.9

Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCC
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGI  563 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  563 (650)
                      +..+|..+...+...|++++|...+++++..+  |+...+..+++.+...|++++|.+.|+++...+|
T Consensus       276 ~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P  341 (372)
T 3ly7_A          276 LSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP  341 (372)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred             CHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence            44444444444444444444444444444432  3444444444444444444444444444444443

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.35  E-value=0.00081  Score=66.44  Aligned_cols=87  Identities=14%  Similarity=-0.002  Sum_probs=63.9

Q ss_pred             HcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHHHHHHH
Q 045674          474 KCGKLDEALALFKRMEDE-----GCD-Q-TVYTYTILINGMFKEHRNEEALKLWDMMID-----KGIT-PT-AASFRALS  539 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~-----~~~-~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~-~~~~~~l~  539 (650)
                      ..|++++|+.++++.++.     |.. | ...+++.|+.+|...|++++|+.+++++++     .|.. |+ ..+++.|+
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            358889999888887652     221 1 245778888888889999999999888874     3432 22 23578888


Q ss_pred             HHHHhcCCHHHHHHHHHHHhh
Q 045674          540 IGLCLSGKVARACKILDELAP  560 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~  560 (650)
                      ..|..+|++++|+.+++++++
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            888899999999888877765

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=97.30  E-value=0.022  Score=62.33  Aligned_cols=189  Identities=20%  Similarity=0.162  Sum_probs=112.0

Q ss_pred             HHhcCCHHHHHH-HHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 045674          367 YAKLGSMNEAIN-IFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDE  445 (650)
Q Consensus       367 ~~~~~~~~~A~~-~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  445 (650)
                      ....+++++|.+ ++..+      ++......++..+.+.|..++|+++.+.         ..   .-.......|++++
T Consensus       609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~---------~~---~~f~~~l~~~~~~~  670 (814)
T 3mkq_A          609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD---------QD---QKFELALKVGQLTL  670 (814)
T ss_dssp             HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC---------HH---HHHHHHHHHTCHHH
T ss_pred             HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC---------cc---hheehhhhcCCHHH
Confidence            345677777766 44221      1122336666667778888887766531         11   11233566788888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      |.++.+.      ..+...|..++..+.+.|+++.|++.|.++.+         |..+...+...|+.+...++.+.+..
T Consensus       671 A~~~~~~------~~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~  735 (814)
T 3mkq_A          671 ARDLLTD------ESAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAET  735 (814)
T ss_dssp             HHHHHTT------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHh------hCcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHH
Confidence            8877543      35677888888888888888888888887653         33444555556777666555555444


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG----  601 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~----  601 (650)
                      .|.      +.....++.+.|++++|++++                     .+.+++++|..+.+..     .+..    
T Consensus       736 ~~~------~~~A~~~~~~~g~~~~a~~~~---------------------~~~~~~~~A~~lA~~~-----~~~~~~i~  783 (814)
T 3mkq_A          736 TGK------FNLAFNAYWIAGDIQGAKDLL---------------------IKSQRFSEAAFLGSTY-----GLGDNEVN  783 (814)
T ss_dssp             TTC------HHHHHHHHHHHTCHHHHHHHH---------------------HHTTCHHHHHHHHHHT-----TCCHHHHH
T ss_pred             cCc------hHHHHHHHHHcCCHHHHHHHH---------------------HHcCChHHHHHHHHHh-----CCChHHHH
Confidence            321      122233345566666666554                     4446777777776653     2333    


Q ss_pred             HHHHHHHHHHHhcCCHHHH
Q 045674          602 KIRTALINALRKAGNADLA  620 (650)
Q Consensus       602 ~~~~~l~~~~~~~g~~~~A  620 (650)
                      .+.......+...|+.+.|
T Consensus       784 ~~~~~~~~~L~~~~~~~~a  802 (814)
T 3mkq_A          784 DIVTKWKENLILNGKNTVS  802 (814)
T ss_dssp             HHHHHHHHHHHTTTCHHHH
T ss_pred             HHHHHHHHHHHhccchhHH
Confidence            4445555556666665443

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=97.21  E-value=0.0026  Score=62.96  Aligned_cols=91  Identities=15%  Similarity=0.074  Sum_probs=46.0

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-HHH
Q 045674          469 IDALAKCGKLDEALALFKRMEDEG---CDQ----TVYTYTILINGMFKEHRNEEALKLWDMMID-----KGIT-PT-AAS  534 (650)
Q Consensus       469 ~~~~~~~g~~~~A~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~-----~~~~-p~-~~~  534 (650)
                      +..+.+.|++++|+.++++.++..   ..+    ...+++.|+.+|...|++++|+.+++++++     .|.. |+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            333445566666666666554321   011    133455555566666666666666665552     1221 11 124


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          535 FRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      ++.++..|...|++++|+.++++++
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al  398 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAF  398 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            5555666666666666665555443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=97.15  E-value=0.003  Score=50.13  Aligned_cols=64  Identities=8%  Similarity=0.011  Sum_probs=48.2

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          578 KTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       578 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      ..++.++|.++|+.+++.. +.=..+|...+..-.++|+..+|++++.+++..++.|...+...+
T Consensus        72 ei~D~d~aR~vy~~a~~~h-KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~  135 (161)
T 4h7y_A           72 AIQEPDDARDYFQMARANC-KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL  135 (161)
T ss_dssp             HHHCGGGCHHHHHHHHHHC-TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHHh-HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            4477888888888887664 333778888888888888888888888888888888766655443

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.09  E-value=0.0063  Score=47.23  Aligned_cols=88  Identities=15%  Similarity=0.077  Sum_probs=59.8

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH---HHHHHHHHhhCC-CC-cHHHHHHHHHHHHHcCCHHHHHH
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVAR---ACKILDELAPKG-II-PETAFEDMITCLCKTGRIKEACK  587 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~-~~-~~~~~~~l~~~~~~~g~~~~A~~  587 (650)
                      ...+.+.|.+....|. ++..+-..++|++.+..+..+   ++.+++.+.+.+ |. ..+....++.++.+.|++++|.+
T Consensus        17 l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~   95 (126)
T 1nzn_A           17 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALK   95 (126)
T ss_dssp             HHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHH
Confidence            3444455555554443 577777778888887776555   778888877765 32 55677777888888888888888


Q ss_pred             HHHHHHHcCCCCCHH
Q 045674          588 LADGIVDREREIPGK  602 (650)
Q Consensus       588 ~~~~~~~~~~~~~~~  602 (650)
                      +++.+++.. |.+..
T Consensus        96 ~~~~lL~~e-P~n~Q  109 (126)
T 1nzn_A           96 YVRGLLQTE-PQNNQ  109 (126)
T ss_dssp             HHHHHHHHC-TTCHH
T ss_pred             HHHHHHHhC-CCCHH
Confidence            888888764 43433

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=97.05  E-value=0.0036  Score=48.59  Aligned_cols=92  Identities=10%  Similarity=0.072  Sum_probs=74.5

Q ss_pred             cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCCHHHH
Q 045674          545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKE---ACKLADGIVDRERE-IPGKIRTALINALRKAGNADLA  620 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A  620 (650)
                      ......+.+.|.+....+..+..+-..+++++.+..+..+   ++.+++.+.+.+.+ ........++-++.+.|+|++|
T Consensus        14 ~~~l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A   93 (126)
T 1nzn_A           14 VEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKA   93 (126)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHH
Confidence            3445566777777777777888999999999999887666   99999999876511 2456778899999999999999


Q ss_pred             HHHHHHHHHCCCCChh
Q 045674          621 IKLMHSKIGVGYDRMG  636 (650)
Q Consensus       621 ~~~~~~~~~~~~~~~~  636 (650)
                      ++.++.+++..|....
T Consensus        94 ~~~~~~lL~~eP~n~Q  109 (126)
T 1nzn_A           94 LKYVRGLLQTEPQNNQ  109 (126)
T ss_dssp             HHHHHHHHHHCTTCHH
T ss_pred             HHHHHHHHHhCCCCHH
Confidence            9999999999887543

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.96  E-value=0.065  Score=58.52  Aligned_cols=45  Identities=13%  Similarity=0.204  Sum_probs=23.2

Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          368 AKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFC  418 (650)
Q Consensus       368 ~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~  418 (650)
                      ...|+++.|.++.+.+      .+...|..+...+.+.|+++.|.+.|..+
T Consensus       663 l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~  707 (814)
T 3mkq_A          663 LKVGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNA  707 (814)
T ss_dssp             HHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             hhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHc
Confidence            4455555555553322      14445555555555555555555555543

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=96.94  E-value=0.0071  Score=48.00  Aligned_cols=113  Identities=11%  Similarity=0.077  Sum_probs=61.0

Q ss_pred             CCCHHHHHHHHHHHHHcCCH------HHHHHHHHHHHHcCCCCCH-HHHHHHHHH------HHhcCCHHHHHHHHHHHHH
Q 045674          459 PRDSYCYNVLIDALAKCGKL------DEALALFKRMEDEGCDQTV-YTYTILING------MFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       459 ~~~~~~~~~l~~~~~~~g~~------~~A~~~~~~~~~~~~~~~~-~~~~~l~~~------~~~~~~~~~A~~~~~~~~~  525 (650)
                      +.|..+|...+....+.|+.      +..+++|++.... ++|+. ..|...+..      +...++.++|.++|+.+++
T Consensus        10 p~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~   88 (161)
T 4h7y_A           10 ANNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARA   88 (161)
T ss_dssp             CCSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence            45666666666666666666      6666677766654 23321 111111111      1233566666666666654


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHH
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMI  573 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~  573 (650)
                      .+-.- ...|...++--.++|+...|.+++.+++..++.+.+.+...+
T Consensus        89 ~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a~  135 (161)
T 4h7y_A           89 NCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIAL  135 (161)
T ss_dssp             HCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHHH
T ss_pred             HhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHHH
Confidence            32222 445555555555666666666666666666666555554443

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.84  E-value=0.11  Score=40.27  Aligned_cols=66  Identities=21%  Similarity=0.313  Sum_probs=40.9

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +.....+..+...|+-++-.+++..++... ++++..+..++.+|.+.|+..+|.++++++.++|..
T Consensus        92 e~vd~ALd~lv~~~KkDqLdki~~~~l~n~-~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k  157 (172)
T 1wy6_A           92 EHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK  157 (172)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHHHHHHHhccHhHHHHHHHHHhccC-CCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence            344444555566666666666666654432 566666667777777777777777777777776654

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.49  E-value=0.2  Score=38.83  Aligned_cols=140  Identities=13%  Similarity=0.112  Sum_probs=85.1

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA  516 (650)
Q Consensus       437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  516 (650)
                      +.-.|.+++..++..+....   .+..-+|-++.-....-+-+-..++++.+-+. +  |.          ...|+....
T Consensus        17 ~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki-F--Di----------s~C~NlKrV   80 (172)
T 1wy6_A           17 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV   80 (172)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred             HHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh-c--Cc----------HhhhcHHHH
Confidence            34457777777777777664   35555555555555555555555555554332 1  11          123343333


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          517 LKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ...+-.+     .-+...++..+..+..+|+-++-.+++..+....+.+++.+..++.+|.+.|+..+|.+++.++.+.|
T Consensus        81 i~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           81 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3333322     11444555566667778888888888888766555577888888888888888888888888888777


Q ss_pred             C
Q 045674          597 R  597 (650)
Q Consensus       597 ~  597 (650)
                      .
T Consensus       156 ~  156 (172)
T 1wy6_A          156 E  156 (172)
T ss_dssp             C
T ss_pred             h
Confidence            3

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=96.29  E-value=2.9e-06  Score=81.18  Aligned_cols=251  Identities=12%  Similarity=0.058  Sum_probs=152.2

Q ss_pred             CCchhhhHHHHHHhhcCCCChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 045674           91 SSDMEANLDSFCRKFLIKLSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVF  170 (650)
Q Consensus        91 ~~~~~~al~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  170 (650)
                      .+...+++++|.+    .-+|+.+..|+..+...|.++.-.+++.-+++..   .++.+=..++-+|++.+++.+..+++
T Consensus        67 ~~~v~eAIdsyIk----A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~---ke~~IDteLi~ayAk~~rL~elEefl  139 (624)
T 3lvg_A           67 KGMVKEAIDSYIK----ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI  139 (624)
T ss_dssp             SSSCTTTTTSSCC----CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC---CSTTTTHHHHHHHHTSCSSSTTTSTT
T ss_pred             cCchHHHHHHHHh----CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh---cccccHHHHHHHHHhhCcHHHHHHHH
Confidence            4667788887764    3567777888888889999999999999887653   34445567899999999887655443


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCC
Q 045674          171 NELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGP  250 (650)
Q Consensus       171 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~  250 (650)
                      .       .++..-...++.-+...|.++.|.-+|..+..         |..|..+++..|++..|.+.-++      .-
T Consensus       140 ~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN---------~akLAstLV~L~~yq~AVdaArK------An  197 (624)
T 3lvg_A          140 N-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN---------FGRLASTLVHLGEYQAAVDGARK------AN  197 (624)
T ss_dssp             S-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCC---------CTTTSSSSSSCSGGGSSTTTTTT------CC
T ss_pred             c-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCcc---------HHHHHHHHHHHHHHHHHHHHHHh------cC
Confidence            2       34555566778888888888888777765432         33344556667777666543332      23


Q ss_pred             ChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 045674          251 DVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIG  330 (650)
Q Consensus       251 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~  330 (650)
                      ++.+|-.+-.+|...+++.-|.-.--.+.-.   +|  -...++..|-..|.+++-+.+++.-.... ......|+-|.-
T Consensus       198 s~ktWKeV~~ACvd~~EfrLAqicGLniIvh---ad--eL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaI  271 (624)
T 3lvg_A          198 STRTWKEVCFACVDGKEFRLAQMCGLHIVVH---AD--ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAI  271 (624)
T ss_dssp             SSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC---SS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHH
T ss_pred             ChhHHHHHHHHHhCchHHHHHHHhcchhccc---HH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHH
Confidence            5677777777777777776665444333321   11  11224555666777777777777655321 224556666666


Q ss_pred             HHHhcCChHHHHHHHHHHHHc-CCCc------CHHHHHHHHHHHHhcCCHHHHH
Q 045674          331 GLCKVGKCIEGHAIFESMIRR-GCQP------NVAIYTALIDSYAKLGSMNEAI  377 (650)
Q Consensus       331 ~~~~~g~~~~a~~~~~~~~~~-~~~~------~~~~~~~l~~~~~~~~~~~~A~  377 (650)
                      .|++- +.++-.+.++..-.+ +++-      ....|.-++-.|.+-.+++.|.
T Consensus       272 LYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~  324 (624)
T 3lvg_A          272 LYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI  324 (624)
T ss_dssp             HHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence            66554 233333333222111 1110      1234555666666666666554

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=96.25  E-value=0.081  Score=41.17  Aligned_cols=70  Identities=23%  Similarity=0.194  Sum_probs=52.9

Q ss_pred             CCCCCHHHHHHHHHHHHhcCCH---HHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          527 GITPTAASFRALSIGLCLSGKV---ARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       527 ~~~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      +..|+..+-..++|++.+..+.   .+++.+++.+.+.++. ..+.+..++.++.+.|++++|.++.+.+++..
T Consensus        35 ~~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~e  108 (134)
T 3o48_A           35 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE  108 (134)
T ss_dssp             GGGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC
T ss_pred             CCCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhC
Confidence            4567778888888888877654   4677788887776664 56777778888888888888888888888764

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=96.13  E-value=0.19  Score=39.74  Aligned_cols=74  Identities=20%  Similarity=0.140  Sum_probs=56.2

Q ss_pred             CCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 045674          527 GITPTAASFRALSIGLCLSGK---VARACKILDELAPKGII-PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPG  601 (650)
Q Consensus       527 ~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  601 (650)
                      +..|+..+-..++|++.+..+   ..+++.+++.+...++. ..+....++.++.+.|++++|.++.+.+++.. |.|.
T Consensus        34 ~~~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~e-P~n~  111 (144)
T 1y8m_A           34 GPTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RNNK  111 (144)
T ss_dssp             STTSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTC-CCCH
T ss_pred             cCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC-CCcH
Confidence            345788888888888888765   44678888888876664 66777788888888888888888888888874 4343

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.04  E-value=0.5  Score=39.22  Aligned_cols=8  Identities=13%  Similarity=0.156  Sum_probs=2.9

Q ss_pred             CCHHHHHH
Q 045674          511 HRNEEALK  518 (650)
Q Consensus       511 ~~~~~A~~  518 (650)
                      |+++++.+
T Consensus       103 Gdv~~~i~  110 (177)
T 3mkq_B          103 NSTKERSS  110 (177)
T ss_dssp             TCHHHHHH
T ss_pred             CCHHHHHH
Confidence            33333333

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=95.96  E-value=0.07  Score=41.54  Aligned_cols=76  Identities=11%  Similarity=-0.022  Sum_probs=62.5

Q ss_pred             CCCcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhh
Q 045674          562 GIIPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGS  637 (650)
Q Consensus       562 ~~~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  637 (650)
                      |..+..+-..+++++.+..+   ..+++.+++.+.+.+.......+..++-++.+.|++++|+++.+.+++..|.....
T Consensus        36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA  114 (134)
T 3o48_A           36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV  114 (134)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHH
T ss_pred             CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHH
Confidence            34478888889999998876   45789999999987622346788899999999999999999999999998876443

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.90  E-value=0.61  Score=38.71  Aligned_cols=43  Identities=21%  Similarity=0.308  Sum_probs=19.9

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR  487 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  487 (650)
                      ..|+++.|.++.+++      .+...|..|+....+.|+++-|++.|.+
T Consensus        17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~   59 (177)
T 3mkq_B           17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQT   59 (177)
T ss_dssp             HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence            344444444444332      2344444455444445555444444444

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=95.76  E-value=0.17  Score=39.90  Aligned_cols=73  Identities=11%  Similarity=-0.009  Sum_probs=61.2

Q ss_pred             CcHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          564 IPETAFEDMITCLCKTGR---IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       564 ~~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                      .+..+-..+++++.+..+   ..+++.+++.+.+.+..........++-++.+.|+|++|+++.+.+++..|....
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~Q  112 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQ  112 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHH
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHH
Confidence            478888889999999886   4578999999998752235677788999999999999999999999999887643

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.79  E-value=0.13  Score=41.85  Aligned_cols=57  Identities=9%  Similarity=-0.018  Sum_probs=32.4

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC-CCCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHh
Q 045674          503 LINGMFKEHRNEEALKLWDMMIDK-GITPT-------AASFRALSIGLCLSGKVARACKILDELA  559 (650)
Q Consensus       503 l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~  559 (650)
                      -+..+...|.++.|+-+.+.+... +..|+       ..++..++.++...|++..|...|++++
T Consensus        26 qik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qAL   90 (167)
T 3ffl_A           26 HVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMAL   90 (167)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence            344556667777776666654421 11222       1244556666667777777777776654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=94.75  E-value=0.16  Score=53.33  Aligned_cols=53  Identities=13%  Similarity=0.001  Sum_probs=27.0

Q ss_pred             HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 045674          574 TCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSK  627 (650)
Q Consensus       574 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  627 (650)
                      ..|...|+++-|+++.+++.... |.+-.+|..|+.+|...|+++.|+-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33444555555555555555443 444455555555555555555555554443

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=94.48  E-value=3.1  Score=38.69  Aligned_cols=166  Identities=13%  Similarity=0.023  Sum_probs=92.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH----HHHHHcCCCCCHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF----KRMEDEGCDQTVYTYTILI  504 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~----~~~~~~~~~~~~~~~~~l~  504 (650)
                      +|.++..-|.+.+++++|++++-....               .+.+.|+...|.++.    +-..+.+.++|......++
T Consensus        37 ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~  101 (336)
T 3lpz_A           37 ETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLL  101 (336)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred             HHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            344555568888888888887654332               245566665555443    4445567777887777777


Q ss_pred             HHHHhcCCHH-HHHHHHHHHHH----C--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-HHHHHHHHHHH
Q 045674          505 NGMFKEHRNE-EALKLWDMMID----K--GITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-ETAFEDMITCL  576 (650)
Q Consensus       505 ~~~~~~~~~~-~A~~~~~~~~~----~--~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~  576 (650)
                      ..+.....-+ .=..+.+++++    .  ...-|+.....++..|.+.+++.+|...|-  .  +-++ .+.+..+..-+
T Consensus       102 ~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i--l--g~~~s~~~~a~mL~ew  177 (336)
T 3lpz_A          102 GCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV--L--GTKESPEVLARMEYEW  177 (336)
T ss_dssp             HHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT--T--SCTTHHHHHHHHHHHH
T ss_pred             HHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH--h--cCCchHHHHHHHHHHH
Confidence            7665443211 11233333331    1  233466777777777777777777777662  1  2222 24444443333


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIR-TALINALRKAGNADLAIKLMHSKIG  629 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~  629 (650)
                      ...+.                +.....+ ...+--|.-.++...|..++....+
T Consensus       178 ~~~~~----------------~~e~dlfiaRaVL~yL~l~n~~~A~~~~~~f~~  215 (336)
T 3lpz_A          178 YKQDE----------------SHTAPLYCARAVLPYLLVANVRAANTAYRIFTS  215 (336)
T ss_dssp             HHTSC----------------GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHhcC----------------CccHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33222                1112222 2223336678899999887766554

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=94.43  E-value=3.8  Score=40.43  Aligned_cols=50  Identities=6%  Similarity=0.135  Sum_probs=28.7

Q ss_pred             CChHHHHHHHHHHHHc-----CCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          336 GKCIEGHAIFESMIRR-----GCQPNVAIYTALIDSYAKLGSMNEAINIFERMKY  385 (650)
Q Consensus       336 g~~~~a~~~~~~~~~~-----~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  385 (650)
                      |++++|.+.+..+.+.     ...........++..|...|+++...+.+.-+..
T Consensus        30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lsk   84 (445)
T 4b4t_P           30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSK   84 (445)
T ss_dssp             HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHT
T ss_pred             CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            5666666666555432     1222344556666777777777776666655543

>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}

Probab=94.34  E-value=0.22  Score=40.52  Aligned_cols=133  Identities=14%  Similarity=0.121  Sum_probs=80.4

Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCC-------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCCHHH
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEG-CDQT-------VYTYTILINGMFKEHRNEEALKLWDMMIDK--GITPTAAS  534 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~-------~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~~~~  534 (650)
                      +..-+..+...|.++.|+-+.+.+.... ..++       ..++..++.++...|++..|...|+++++.  .+.-+...
T Consensus        23 l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~  102 (167)
T 3ffl_A           23 VIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKV  102 (167)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC------
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence            4455667788999999998887764421 1233       236677888999999999999999998742  11111111


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      ...+..    ......       -... +.+.++-..++.|+.+.|++++|+.+++.+....  -++.+-..|+..|
T Consensus       103 ~~~~~~----~ss~p~-------s~~~-~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip~k~--Rt~kvnm~LakLy  165 (167)
T 3ffl_A          103 RPSTGN----SASTPQ-------SQCL-PSEIEVKYKLAECYTVLKQDKDAIAILDGIPSRQ--RTPKINMLLANLY  165 (167)
T ss_dssp             -------------------------CC-CCHHHHHHHHHHHHHHTTCHHHHHHHHHTSCGGG--CCHHHHHHHHHHC
T ss_pred             cccccc----cCCCcc-------cccc-cchHHHHHHHHHHHHHHCCHHHHHHHHhcCCchh--cCHHHHHHHHHHh
Confidence            111100    000000       0011 2366778889999999999999999998765442  3455555555544

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=94.17  E-value=0.75  Score=40.94  Aligned_cols=124  Identities=11%  Similarity=0.044  Sum_probs=85.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcH---HHHHHHHHHHHHcCC
Q 045674          505 NGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPE---TAFEDMITCLCKTGR  581 (650)
Q Consensus       505 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~  581 (650)
                      ....+.|+.++|++....-++..+. |...-..+++.+|-.|+++.|.+-++.+.+.+|...   ..|..++.+-     
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~aE-----   78 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAA-----   78 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHH-----
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHHH-----
Confidence            3456889999999999999988666 888888899999999999999999999998877622   2344444331     


Q ss_pred             HHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHH--HhcCCHHHHHHHHHHHHHCCCCChhhhh
Q 045674          582 IKEACKLADGIVDRERE-----IPGKIRTALINAL--RKAGNADLAIKLMHSKIGVGYDRMGSIK  639 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~~~-----~~~~~~~~l~~~~--~~~g~~~~A~~~~~~~~~~~~~~~~~~~  639 (650)
                           ..=++...-+..     ........++.++  ...|+.++|..+-.++.+.-+...+.+.
T Consensus        79 -----~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G~~~  138 (273)
T 1zbp_A           79 -----QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN  138 (273)
T ss_dssp             -----HHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred             -----HHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCCCcC
Confidence                 111122211111     1233344555554  4579999999999999998666444433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=93.56  E-value=0.38  Score=50.60  Aligned_cols=53  Identities=11%  Similarity=0.063  Sum_probs=33.2

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGI  592 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  592 (650)
                      ..+...|+++-|+++-++++..-|.+-..|..|+.+|...|+++.|+-.++.+
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc  397 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM  397 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred             HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence            33445566666666666666665666666666666666666666666665554

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=93.44  E-value=2.4  Score=47.91  Aligned_cols=169  Identities=12%  Similarity=0.124  Sum_probs=104.1

Q ss_pred             HHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          114 VSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG  193 (650)
Q Consensus       114 ~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  193 (650)
                      ...++..+...+.++.+.++..|+      +.++..-..++.++...|++++|...|.+... |+..+...         
T Consensus       815 ~~~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l---------  878 (1139)
T 4fhn_B          815 VTELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQ---------  878 (1139)
T ss_dssp             HHHHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCS---------
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchh---------
Confidence            334444455556777787777774      33555667889999999999999999987642 11111000         


Q ss_pred             cCCCHHHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCC----hhhHHHHHHHHHHcCC
Q 045674          194 GLGMVEELLWVWRSMKENG--IEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPD----VVTYNTMIKGYCKVGK  267 (650)
Q Consensus       194 ~~g~~~~a~~~~~~~~~~~--~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~  267 (650)
                       ......    +..+....  ...-..-|..++..+.+.+.++.+.++-+..++.....+    ...|..+.+.+...|+
T Consensus       879 -~~~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~  953 (1139)
T 4fhn_B          879 -FAVLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGK  953 (1139)
T ss_dssp             -CSSHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCC
T ss_pred             -hhhhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCC
Confidence             001111    11112111  111234567777778888888888877776654321112    1257788899999999


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 045674          268 TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDS  305 (650)
Q Consensus       268 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~  305 (650)
                      +++|...+-.+.....  -......|+..+|..|..+.
T Consensus       954 ye~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~~~  989 (1139)
T 4fhn_B          954 FDAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKINQ  989 (1139)
T ss_dssp             SGGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCHHH
T ss_pred             HHHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCChhh
Confidence            9999999888876532  45667777777777766543

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=93.36  E-value=4.9  Score=37.09  Aligned_cols=169  Identities=9%  Similarity=-0.052  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH----HHHHHHcCCCCCHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALAL----FKRMEDEGCDQTVYTYTILI  504 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~----~~~~~~~~~~~~~~~~~~l~  504 (650)
                      .|.++..-|.+.+++++|++++.....               .+.+.|+...|.++    ++...+.+.+++......++
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~   99 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLV   99 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            344455557777778877777654432               24555666555543    44444556777777777777


Q ss_pred             HHHHhcCCHH-HHHHHHHHHH----HCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          505 NGMFKEHRNE-EALKLWDMMI----DKG--ITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       505 ~~~~~~~~~~-~A~~~~~~~~----~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      ..+..-...+ .=.+++++++    +.|  ..-++.....++..|.+.|++.+|...|-...   .++.+.+..+..-+.
T Consensus       100 ~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~---~~s~~~~a~~l~~w~  176 (312)
T 2wpv_A          100 RLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT---HDSMIKYVDLLWDWL  176 (312)
T ss_dssp             HHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC---HHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC---CccHHHHHHHHHHHH
Confidence            6654422111 1123333333    121  22366666777777777777777666553110   013344443333333


Q ss_pred             Hc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          578 KT---GRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       578 ~~---g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      ..   |...++--++               ...+--|.-.|+...|..++....++
T Consensus       177 ~~~~~~~~~e~dlf~---------------~RaVL~yL~l~n~~~A~~~~~~f~~~  217 (312)
T 2wpv_A          177 CQVDDIEDSTVAEFF---------------SRLVFNYLFISNISFAHESKDIFLER  217 (312)
T ss_dssp             HHTTCCCHHHHHHHH---------------HHHHHHHHHTTBHHHHHHHHHHHHHH
T ss_pred             HhcCCCCcchHHHHH---------------HHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence            32   3332221111               11222356688999999998876643

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.26  E-value=0.54  Score=45.64  Aligned_cols=78  Identities=15%  Similarity=0.095  Sum_probs=60.5

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHHHH
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTALIN  609 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l~~  609 (650)
                      ...++..+...|++++|...+..+....|.+...+..++.+|...|+..+|++.|+++.+     .|+.|.+.+-...-.
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~~~  253 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALNER  253 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHHHH
Confidence            344566677888999999888888888888888888999999999999999888887643     478888876655544


Q ss_pred             HHH
Q 045674          610 ALR  612 (650)
Q Consensus       610 ~~~  612 (650)
                      .+.
T Consensus       254 il~  256 (388)
T 2ff4_A          254 ILR  256 (388)
T ss_dssp             HHT
T ss_pred             HHc
Confidence            443

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=93.08  E-value=0.41  Score=46.47  Aligned_cols=74  Identities=14%  Similarity=0.066  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhhhhhh
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSIKRRV  642 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~~  642 (650)
                      +...++..+...|++++|+..++.++... |-+...+..++.+|.+.|+..+|++.|+++.+     .|.+|...+..+.
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l~  251 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  251 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHHH
Confidence            44567788899999999999999999886 77888999999999999999999999998654     5999887776554

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=91.01  E-value=9.5  Score=35.17  Aligned_cols=25  Identities=28%  Similarity=0.252  Sum_probs=14.9

Q ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          461 DSYCYNVLIDALAKCGKLDEALALF  485 (650)
Q Consensus       461 ~~~~~~~l~~~~~~~g~~~~A~~~~  485 (650)
                      ++.....++..|.+.|++.+|+..|
T Consensus       133 dp~LH~~~a~~~~~e~~~~~A~~H~  157 (312)
T 2wpv_A          133 DPYLHNTIGSKLLEGDFVYEAERYF  157 (312)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHH
Confidence            5555566666666666666665544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=90.17  E-value=15  Score=36.13  Aligned_cols=96  Identities=14%  Similarity=0.050  Sum_probs=60.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC--CCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC--HH
Q 045674          360 YTALIDSYAKLGSMNEAINIFERMKYE--GVEPD---EVTYGVIISGLCKNERLEEAMQYFEFCRA----NGVAVN--AM  428 (650)
Q Consensus       360 ~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~~--~~  428 (650)
                      ...|+..|...|++.+|.+++..+...  +....   ...+...++.|...+++..|..++.++..    ....|+  ..
T Consensus       140 ~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~  219 (445)
T 4b4t_P          140 TKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLE  219 (445)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHH
T ss_pred             HHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHH
Confidence            345677777788888888888777532  21111   23455666677777888888777776532    222222  24


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVE  455 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~  455 (650)
                      .+...+..+...+++.+|...|.++..
T Consensus       220 ~~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          220 YYNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            456667777777888777777766654

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=90.01  E-value=0.0011  Score=63.84  Aligned_cols=245  Identities=13%  Similarity=0.079  Sum_probs=142.6

Q ss_pred             HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 045674          147 LECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNG  226 (650)
Q Consensus       147 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~  226 (650)
                      +.+|..++.+....|+..+|++-|-+..      |+..|..++....+.|.+++.+.++...++..-  +...=+.|+-+
T Consensus        54 p~VWs~LgkAqL~~~~v~eAIdsyIkA~------Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~k--e~~IDteLi~a  125 (624)
T 3lvg_A           54 PAVWSQLAKAQLQKGMVKEAIDSYIKAD------DPSSYMEVVQAANTSGNWEELVKYLQMARKKAR--ESYVETELIFA  125 (624)
T ss_dssp             CCCSSSHHHHTTTSSSCTTTTTSSCCCS------CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCC--STTTTHHHHHH
T ss_pred             ccHHHHHHHHHHccCchHHHHHHHHhCC------ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhc--ccccHHHHHHH
Confidence            3456666666666666666655442221      344456666666666666666666665554422  22233455566


Q ss_pred             HHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhC--------------------CCCCC
Q 045674          227 LVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEAR--------------------NVQPD  286 (650)
Q Consensus       227 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------~~~~~  286 (650)
                      |.+.+++.+-++++.       .||..-...+.+-|...|.++.|.-+|..+...                    .-.-+
T Consensus       126 yAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns  198 (624)
T 3lvg_A          126 LAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANS  198 (624)
T ss_dssp             HHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCS
T ss_pred             HHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            666666544322221       344444555555555555555555554433110                    01236


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHH
Q 045674          287 KITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDS  366 (650)
Q Consensus       287 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~  366 (650)
                      ..||..+..+|...+.+.-|.-.--.++-..     .-...++..|-..|.+++-+.+++..+.. -......|+-|+-.
T Consensus       199 ~ktWKeV~~ACvd~~EfrLAqicGLniIvha-----deL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaIL  272 (624)
T 3lvg_A          199 TRTWKEVCFACVDGKEFRLAQMCGLHIVVHA-----DELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAIL  272 (624)
T ss_dssp             SCSHHHHTHHHHHSCTTTTTTHHHHHHHCCS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHH
T ss_pred             hhHHHHHHHHHhCchHHHHHHHhcchhcccH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHH
Confidence            6789999999999998887765544444321     12334566788899999999999988743 23467788888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCC-------CHHhHHHHHHHHHhcCCHHHHHH
Q 045674          367 YAKLGSMNEAINIFERMKYEGVEP-------DEVTYGVIISGLCKNERLEEAMQ  413 (650)
Q Consensus       367 ~~~~~~~~~A~~~~~~~~~~~~~p-------~~~~~~~l~~~~~~~g~~~~a~~  413 (650)
                      |++- ++++.++.++..-.+=-.|       ....|.-++-.|++-.+++.|..
T Consensus       273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l  325 (624)
T 3lvg_A          273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII  325 (624)
T ss_dssp             HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred             HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence            8765 4666666655433210011       23456667777777777776643

>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A

Probab=88.72  E-value=17  Score=34.81  Aligned_cols=166  Identities=10%  Similarity=-0.064  Sum_probs=80.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCC---CHHhHHHHHHHHHhc-CCHHHHHHHHHHHHHCCCCCCHHHH--
Q 045674          358 AIYTALIDSYAKLGSMNEAINIFERMKYE-GVEP---DEVTYGVIISGLCKN-ERLEEAMQYFEFCRANGVAVNAMFY--  430 (650)
Q Consensus       358 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p---~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~--  430 (650)
                      .....|+..|.+.|+.++..+++.....- +.-+   .......++..+... +..+.-.++..+..+-.-. +..+|  
T Consensus        20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~kak~~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~-~~r~flr   98 (394)
T 3txn_A           20 QGILQQGELYKQEGKAKELADLIKVTRPFLSSISKAKAAKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQ-EKRTFLR   98 (394)
T ss_dssp             HHHHHHHHHHHHHTCHHHHHHHHHHTTTGGGGSCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHH-TTCHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHH-HHHHHHH
Confidence            44556888888888888888888776431 0011   122344555555443 3333333333333221000 11111  


Q ss_pred             ----HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHH
Q 045674          431 ----SSLIDGLGKAGRVDEAEELFEEMVEKGCPRD-----SYCYNVLIDALAKCGKLDEALALFKRMEDE--GCDQTVYT  499 (650)
Q Consensus       431 ----~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~  499 (650)
                          ..++..|...|++.+|.+++..+.+.--..|     ..++..-+..|...+++.++...+......  .+.+++..
T Consensus        99 ~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i  178 (394)
T 3txn_A           99 QSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKV  178 (394)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHH
Confidence                1456666667777777666666665311111     123344455566666666666666655432  11122221


Q ss_pred             HH----HHHHHHH-hcCCHHHHHHHHHHHH
Q 045674          500 YT----ILINGMF-KEHRNEEALKLWDMMI  524 (650)
Q Consensus       500 ~~----~l~~~~~-~~~~~~~A~~~~~~~~  524 (650)
                      -.    .-+..+. ..++|.+|...|-+..
T Consensus       179 ~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf  208 (394)
T 3txn_A          179 QGALDLQSGILHAADERDFKTAFSYFYEAF  208 (394)
T ss_dssp             HHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence            11    1122234 4566666666655543

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=88.61  E-value=6.5  Score=33.24  Aligned_cols=73  Identities=14%  Similarity=0.010  Sum_probs=51.3

Q ss_pred             CCCCHHHHHHHHHHHHh--cCCHHHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 045674          528 ITPTAASFRALSIGLCL--SGKVARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREIP  600 (650)
Q Consensus       528 ~~p~~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~  600 (650)
                      ..-|...+..-+...-.  .++..++.++|..+...++.  -...|...+..+...|++++|.++|+..++.+-.|-
T Consensus        73 YkND~RYLklWl~Ya~~~~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~  149 (202)
T 3esl_A           73 YRNDPRFLKIWIWYINLFLSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY  149 (202)
T ss_dssp             GTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred             ccCCHHHHHHHHHHHHhhcccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence            34455544333332222  45577888888888876655  677888888888888999999999998888776663

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=87.27  E-value=5.8  Score=44.79  Aligned_cols=145  Identities=19%  Similarity=0.131  Sum_probs=72.0

Q ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----------------
Q 045674          432 SLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-----------------  494 (650)
Q Consensus       432 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----------------  494 (650)
                      .++..+...+..+-+.++..-     ++.++.....++.+|...|++++|...|++.... +.                 
T Consensus       817 ~l~~~l~~~~~~~~~~~l~~~-----~~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~-~~~~~~l~~~~~~~~~~~~  890 (1139)
T 4fhn_B          817 ELVEKLFLFKQYNACMQLIGW-----LNSDPIAVYLKALIYLKSKEAVKAVRCFKTTSLV-LYSHTSQFAVLREFQEIAE  890 (1139)
T ss_dssp             HHHHHHHHHSCTTHHHHHHHH-----SCCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCS-CTTCCCSCSSHHHHHHHHH
T ss_pred             HHHHHHHHhhhHHHHHHHhhh-----ccCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhh-hcccchhhhhhcccccccc
Confidence            345556666666655543322     2445555566777777788888888777765211 10                 


Q ss_pred             ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          495 ------QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTA----ASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       495 ------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                            .-..-|..++..+.+.+.++.+.++-+.+++.....+.    ..|..+...+...|++++|...+-.+..... 
T Consensus       891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-  969 (1139)
T 4fhn_B          891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-  969 (1139)
T ss_dssp             TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-
T ss_pred             cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-
Confidence                  01122344444455555555555555555432111111    1234444555555555555555544443211 


Q ss_pred             cHHHHHHHHHHHHHcCCHH
Q 045674          565 PETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~~  583 (650)
                      -...+..|+..+|..|..+
T Consensus       970 r~~cLr~LV~~lce~~~~~  988 (1139)
T 4fhn_B          970 KKSCLLDFVNQLTKQGKIN  988 (1139)
T ss_dssp             CHHHHHHHHHHHHHHCCHH
T ss_pred             HHHHHHHHHHHHHhCCChh
Confidence            2344455555555555433

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=86.57  E-value=1.9  Score=38.35  Aligned_cols=57  Identities=16%  Similarity=0.113  Sum_probs=51.0

Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ..+.+.|+.++|+..+...++..|.|...-..+.+.||-.|+++.|.+-++.+.+.+
T Consensus         5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~   61 (273)
T 1zbp_A            5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLF   61 (273)
T ss_dssp             HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC
Confidence            345678999999999999999999999999999999999999999999999988875

>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}

Probab=84.56  E-value=11  Score=31.99  Aligned_cols=73  Identities=10%  Similarity=-0.035  Sum_probs=57.2

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhh
Q 045674          568 AFEDMITCLCKTGRIKEACKLADGIVDREREI-PGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRR  641 (650)
Q Consensus       568 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  641 (650)
                      +|..++..+ ..+...++.++|..+...++-. -+..|...+..+-..|++++|.++|+..++.+-.|...+.+.
T Consensus        82 lWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~~rL~~~  155 (202)
T 3esl_A           82 IWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPYNRLLRS  155 (202)
T ss_dssp             HHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHHHHHH
T ss_pred             HHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHHHHHHH
Confidence            444444433 2445789999999998887554 466778899999999999999999999999999997776654

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=83.63  E-value=8.1  Score=28.27  Aligned_cols=49  Identities=18%  Similarity=0.127  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          513 NEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       513 ~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      .=+..+-++.+....+.|++.+..+.+++|.+.+++.-|.++++.+..+
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3445555555555566666666666666666666666666666666643

>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A

Probab=83.53  E-value=16  Score=29.36  Aligned_cols=51  Identities=14%  Similarity=0.155  Sum_probs=38.9

Q ss_pred             HHHHHHHHHHhhCCCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          549 ARACKILDELAPKGII--PETAFEDMITCLCKTGRIKEACKLADGIVDREREI  599 (650)
Q Consensus       549 ~~A~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  599 (650)
                      +++.++|..+..+++.  -...|...+..+...|++++|.++|+..++.+-.|
T Consensus        82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P  134 (152)
T 4a1g_A           82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP  134 (152)
T ss_dssp             SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred             CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence            3477788888776665  66777788888888888888888888888776555

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=82.85  E-value=30  Score=32.12  Aligned_cols=111  Identities=14%  Similarity=0.111  Sum_probs=54.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHH----HHHHHCCCCCCHHhHHHHHH
Q 045674          325 YNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIF----ERMKYEGVEPDEVTYGVIIS  400 (650)
Q Consensus       325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~----~~~~~~~~~p~~~~~~~l~~  400 (650)
                      |.++..-|.+.+++++|.+++.....               .+.+.|+...|.++-    +-..+.++++|......++.
T Consensus        38 ~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~  102 (336)
T 3lpz_A           38 TRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG  102 (336)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred             HHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence            44455557777777777776543322               233445554443333    33444566667666666666


Q ss_pred             HHHhcCCHHH-HHHHHHHHH----HC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          401 GLCKNERLEE-AMQYFEFCR----AN--GVAVNAMFYSSLIDGLGKAGRVDEAEELF  450 (650)
Q Consensus       401 ~~~~~g~~~~-a~~~~~~~~----~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  450 (650)
                      .+.....-+- =..+++.++    +.  ...-+......+...|.+.+++.+|...|
T Consensus       103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            5554432111 111112111    11  12234455555555566555555555544

>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}

Probab=81.80  E-value=7  Score=28.39  Aligned_cols=80  Identities=14%  Similarity=0.072  Sum_probs=48.7

Q ss_pred             CCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHH
Q 045674          124 SKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLW  203 (650)
Q Consensus       124 ~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~  203 (650)
                      ..+.++|..+.+|....+.   ...+-..-+..+...|++++|..+.+.+-    .||...|.+|..  .+.|..+++..
T Consensus        19 ~H~HqEA~tIAdwL~~~~~---~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c----~pdlepw~ALce--~rlGl~s~le~   89 (115)
T 2uwj_G           19 QHCHEEALCIAEWLERLGQ---DEAARLIRISSLANQGRYQEALAFAHGNP----WPALEPWFALCE--WHLGLGAALDR   89 (115)
T ss_dssp             TTCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHTTCHHHHHGGGTTCC----CGGGHHHHHHHH--HHTTCHHHHHH
T ss_pred             chHHHHHHHHHHHHHhCCc---HHHHHHHHHHHHHcchhHHHHHHhcCCCC----CchHHHHHHHHH--HhcccHHHHHH
Confidence            4567888888888877642   11122233445667777777776655433    556666665554  35677777776


Q ss_pred             HHHHHHHCC
Q 045674          204 VWRSMKENG  212 (650)
Q Consensus       204 ~~~~~~~~~  212 (650)
                      .+.++...|
T Consensus        90 rL~~la~sg   98 (115)
T 2uwj_G           90 RLAGLGGSS   98 (115)
T ss_dssp             HHHHHHTCS
T ss_pred             HHHHHHhCC
Confidence            666666654

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=81.00  E-value=54  Score=33.76  Aligned_cols=201  Identities=9%  Similarity=0.011  Sum_probs=115.9

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHhH----HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          371 GSMNEAINIFERMKYEGVEPDEVTY----GVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEA  446 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~~~p~~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  446 (650)
                      .+.+.|...+....... ..+....    ..+...+...+...++...+........  +.....-.+....+.|+++.|
T Consensus       228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHH
T ss_pred             cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCC--ChHHHHHHHHHHHHCCCHHHH
Confidence            47889999998886532 1232222    2222233334435566677766554432  333344445555677999999


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          447 EELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       447 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  526 (650)
                      ...|+.|.... ........-++.++...|+.++|..+|+.+.+.   .+  .|..+.  ..+.|..-..       .-.
T Consensus       305 ~~~~~~l~~~~-~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~~--fYg~lA--a~~Lg~~~~~-------~~~  369 (618)
T 1qsa_A          305 NTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVA--AQRIGEEYEL-------KID  369 (618)
T ss_dssp             HHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHH--HHHTTCCCCC-------CCC
T ss_pred             HHHHHHccccc-cccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---CC--hHHHHH--HHHcCCCCCC-------CCC
Confidence            99998876532 234555677788888899999999999988752   12  233322  1233321000       000


Q ss_pred             CCCC---CH---HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 045674          527 GITP---TA---ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG  591 (650)
Q Consensus       527 ~~~p---~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  591 (650)
                      .+.+   ..   .....-+..+...|....|...+..+... . +..-...++......|.++.++....+
T Consensus       370 ~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~-~~~~~~~la~~a~~~~~~~~~v~~~~~  438 (618)
T 1qsa_A          370 KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K-SKTEQAQLARYAFNNQWWDLSVQATIA  438 (618)
T ss_dssp             CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C-CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            0111   00   01123345577889999999888887764 2 333344566667778888877765543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=80.18  E-value=15  Score=26.89  Aligned_cols=49  Identities=8%  Similarity=0.034  Sum_probs=27.4

Q ss_pred             HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          408 LEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEK  456 (650)
Q Consensus       408 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~  456 (650)
                      .=+..+-++.+...+..|+..+....+.+|.+.+++.-|.++|+-+..+
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K   74 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   74 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            3344455555555555556666666666666666666666666555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	650
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	1e-09
d1w3ba_	388	a.118.8.1 (A:) O-GlcNAc transferase p110 subunit,	4e-04
d1zbpa1	264	e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {V	2e-07
d2onda1	308	a.118.8.7 (A:242-549) Cleavage stimulation factor	6e-06

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.1 bits (139), Expect = 1e-09
 Identities = 50/353 (14%), Positives = 97/353 (27%), Gaps = 21/353 (5%)

Query: 141 KKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEE 200
           ++   N    + L      C  +DR                +     L +++  LG V  
Sbjct: 27  RQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLA--------IKQNPLLAEAYSNLGNV-- 76

Query: 201 LLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIK 260
                  ++E                        +      +    +     + YN  + 
Sbjct: 77  -YKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLY 135

Query: 261 GYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLY---HEMDEKG 317
                                       T      A    G   +            EK 
Sbjct: 136 CVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKA 195

Query: 318 IEI-PSH--AYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMN 374
           + + P+   AY  +   L +        A +   +       V  +  L   Y + G ++
Sbjct: 196 VTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVV-HGNLACVYYEQGLID 254

Query: 375 EAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLI 434
            AI+ + R   E        Y  + + L +   + EA   +                +L 
Sbjct: 255 LAIDTYRRA-IELQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLN-NLA 312

Query: 435 DGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
           +   + G ++EA  L+ + +E   P  +  ++ L   L + GKL EAL  +K 
Sbjct: 313 NIKREQGNIEEAVRLYRKALEV-FPEFAAAHSNLASVLQQQGKLQEALMHYKE 364

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} Length = 388

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.8 bits (94), Expect = 4e-04
 Identities = 9/49 (18%), Positives = 20/49 (40%), Gaps = 1/49 (2%)

Query: 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKR 487
           +AG  + AE    ++  +  P ++    +L     +C +LD +      
Sbjct: 11  QAGDFEAAERHCMQLWRQ-EPDNTGVLLLLSSIHFQCRRLDRSAHFSTL 58

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} Length = 264

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

 Score = 50.8 bits (121), Expect = 2e-07
 Identities = 19/141 (13%), Positives = 43/141 (30%), Gaps = 11/141 (7%)

Query: 439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRM--EDEGCDQT 496
             G++ +A EL  E ++   P+D+   +  I+ L   G  + A     +           
Sbjct: 8   SEGQLQQALELLIEAIKA-SPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPG 66

Query: 497 VYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARA---CK 553
                 L+         ++  +        G                +S    +      
Sbjct: 67  ASQLRHLVKAA---QARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELAL 123

Query: 554 ILDELAPK--GIIPETAFEDM 572
            ++EL  +   +  +T+F D+
Sbjct: 124 QIEELRQEKGFLANDTSFSDV 144

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} Length = 308

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 46.1 bits (108), Expect = 6e-06
 Identities = 24/215 (11%), Positives = 57/215 (26%), Gaps = 8/215 (3%)

Query: 412 MQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA 471
            +  ++   +   +      +           DEA  ++E  +     ++   Y    D 
Sbjct: 54  YEAAQYLEQSSKLLAEKGDMNN-----AKLFSDEAANIYERAISTLLKKNMLLYFAYADY 108

Query: 472 LAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT 531
                K ++  +++ R+           Y   +    +    +    ++    +   T  
Sbjct: 109 EESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDARTRH 168

Query: 532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADG 591
                A  +    S   + A KI +    K           I  L           L + 
Sbjct: 169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFER 228

Query: 592 IVDREREIPGK---IRTALINALRKAGNADLAIKL 623
           ++      P K   I    +      G+    +K+
Sbjct: 229 VLTSGSLPPEKSGEIWARFLAFESNIGDLASILKV 263

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	650
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.96
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.95
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.78
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.75
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.51
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.51
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.43
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.42
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.4
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	99.39
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	99.38
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.28
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.14
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	99.1
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	99.08
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	99.04
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.03
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	99.01
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.98
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.97
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.95
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.94
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.92
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.88
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.83
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.81
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.8
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.76
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.74
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.72
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.69
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	98.67
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.63
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	98.61
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.61
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.57
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.56
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.5
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	98.48
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	98.43
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.35
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	98.34
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	98.34
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.29
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.21
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	98.16
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	98.15
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	98.04
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	97.97
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.92
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.88
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.62
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	97.25
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	97.15
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	97.02
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	96.76
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	96.75
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.68
d1qsaa1	450	70 KDa soluble lytic transglycosylase (SLT70), sup	95.0
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	80.68

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.96  E-value=4.8e-25  Score=218.56  Aligned_cols=382  Identities=13%  Similarity=0.056  Sum_probs=272.3

Q ss_pred             HHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 045674          225 NGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFD  304 (650)
Q Consensus       225 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  304 (650)
                      ..+.+.|++++|.+.++++.+.. +.+..++..+..+|.+.|++++|+..|+++.+.+ +-+..++..+..++...|+++
T Consensus         7 ~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~~   84 (388)
T d1w3ba_           7 HREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhcccc
Confidence            34455666666666666665442 2345566666666666666666666666666543 224556666666666666677


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045674          305 SCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMK  384 (650)
Q Consensus       305 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  384 (650)
                      +|...+......... ...............+....+............. ...............+....+...+.+..
T Consensus        85 ~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  162 (388)
T d1w3ba_          85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI  162 (388)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred             ccccccccccccccc-cccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhh
Confidence            766666666655322 3344444444445555555555555544444322 33334445555666777777777777666


Q ss_pred             HCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 045674          385 YEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYC  464 (650)
Q Consensus       385 ~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~  464 (650)
                      ... .-+...+..+...+...|++++|...++...+..+. +...+..++..+...|++++|...++.....+ +.+...
T Consensus       163 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~  239 (388)
T d1w3ba_         163 ETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNHAVV  239 (388)
T ss_dssp             HHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTCHHH
T ss_pred             ccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhHHHH
Confidence            542 124556677777778888888888888887776554 66777888888888888888888888888765 567778


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL  544 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~  544 (650)
                      +..++..+.+.|++++|+..|+++.+..+. +..++..++..+...|++++|.+.++.+....+ .+...+..++.++..
T Consensus       240 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~  317 (388)
T d1w3ba_         240 HGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKRE  317 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHH
Confidence            888888888888888888888888876544 677888888888888999999988888887643 377788888888888


Q ss_pred             cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          545 SGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       545 ~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      .|++++|++.++++++..|.+..++..++.++...|++++|++.|+++++.+ |.+..+|..++.+|.+.||
T Consensus       318 ~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         318 QGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             TTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTCC
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence            9999999999999988888888888889999999999999999999998876 6678888888888888775

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.95  E-value=4.3e-24  Score=211.60  Aligned_cols=384  Identities=16%  Similarity=0.068  Sum_probs=257.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 045674          153 LIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMF  232 (650)
Q Consensus       153 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~  232 (650)
                      ++..+.+.|++++|+..++++++.. |.+...+..++..|.+.|++++|+..|+++.+..                    
T Consensus         5 la~~~~~~G~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--------------------   63 (388)
T d1w3ba_           5 LAHREYQAGDFEAAERHCMQLWRQE-PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--------------------   63 (388)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------------
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--------------------
Confidence            3445555555555555555555443 3345555555555555555555555555554432                    


Q ss_pred             hhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          233 IESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHE  312 (650)
Q Consensus       233 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~  312 (650)
                                      +.+..+|..++..|.+.|++++|++.+....+.. ..+..............+....+......
T Consensus        64 ----------------p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (388)
T d1w3ba_          64 ----------------PLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVS  126 (388)
T ss_dssp             ----------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred             ----------------CCCHHHHHHHHHHhhhhccccccccccccccccc-ccccccccccccccccccccccccccccc
Confidence                            2233444444555555555555555555544432 12233333333333334444444433333


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          313 MDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDE  392 (650)
Q Consensus       313 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~  392 (650)
                      ...... ................+....+...+....... +.+...+..++..+...|++++|...+++...... -+.
T Consensus       127 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~  203 (388)
T d1w3ba_         127 ALQYNP-DLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFL  203 (388)
T ss_dssp             HHHHCT-TCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             cccccc-ccccccccccccccccchhhhhHHHHHHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCc-ccH
Confidence            333221 133333444444555556666666665555542 22455666677777777788888877777765421 145


Q ss_pred             HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          393 VTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDAL  472 (650)
Q Consensus       393 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (650)
                      ..+..+...+...|++++|+..++.....+.. +...+..++..+.+.|++++|+..|+++++.. |.+..++..++.++
T Consensus       204 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  281 (388)
T d1w3ba_         204 DAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANAL  281 (388)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHH
T ss_pred             HHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            56777777888888888888888877776544 66777778888888899999999999888874 66788888899999


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      ...|++++|++.++......+ .+...+..++.++...|++++|+..++++++..+. +..++..++.++...|++++|.
T Consensus       282 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~  359 (388)
T d1w3ba_         282 KEKGSVAEAEDCYNTALRLCP-THADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEAL  359 (388)
T ss_dssp             HHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHHHHTTTCCHHHH
T ss_pred             HHcCCHHHHHHHHHhhhccCC-ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence            999999999999998887644 47788888889999999999999999999876544 6778889999999999999999


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      +.|+++++..|.+..++..++.+|.+.||
T Consensus       360 ~~~~~al~l~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         360 MHYKEAIRISPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999999999988875

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.78  E-value=4e-17  Score=156.39  Aligned_cols=229  Identities=11%  Similarity=0.021  Sum_probs=126.7

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 045674          402 LCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEA  481 (650)
Q Consensus       402 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  481 (650)
                      +.+.|++++|+..|+++++..+. +...|..++.++...|++++|...+.++++.. |.+...+..++.+|...|++++|
T Consensus        29 ~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          29 RLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccccccc
Confidence            34444444444444444444333 33444444444444444444444444444432 33344444444444444444444


Q ss_pred             HHHHHHHHHcCCC--------------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHhcC
Q 045674          482 LALFKRMEDEGCD--------------QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGIT-PTAASFRALSIGLCLSG  546 (650)
Q Consensus       482 ~~~~~~~~~~~~~--------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-p~~~~~~~l~~~~~~~g  546 (650)
                      .+.++++....+.              .+.......+..+...+.+.+|...+.++++..+. .+...+..++..+...|
T Consensus       107 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~  186 (323)
T d1fcha_         107 CEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSG  186 (323)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTT
T ss_pred             ccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHH
Confidence            4444444332110              00000111122233445566677777766654332 34556667777777777


Q ss_pred             CHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          547 KVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHS  626 (650)
Q Consensus       547 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  626 (650)
                      ++++|+..+++++...|.+..++..++.++...|++++|++.++++++.+ +.+..++..++.+|.+.|++++|+..|++
T Consensus       187 ~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~  265 (323)
T d1fcha_         187 EYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLE  265 (323)
T ss_dssp             CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            77777777777777767777777777777777777777777777777765 55666777777777777777777777777


Q ss_pred             HHHCCCC
Q 045674          627 KIGVGYD  633 (650)
Q Consensus       627 ~~~~~~~  633 (650)
                      +++..+.
T Consensus       266 al~l~p~  272 (323)
T d1fcha_         266 ALNMQRK  272 (323)
T ss_dssp             HHHHHHT
T ss_pred             HHHhCCc
Confidence            7775443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.75  E-value=7.4e-16  Score=147.42  Aligned_cols=272  Identities=11%  Similarity=-0.030  Sum_probs=174.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC
Q 045674          327 LVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE  406 (650)
Q Consensus       327 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g  406 (650)
                      ..+..+.+.|++++|...|+++++.. +-+..+|..++.+|...|++++|+..|.++.+.... +...+..+...|...|
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~  101 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNES  101 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-cccccccccccccccc
Confidence            34455556666666666666666542 124555566666666666666666666665543211 3445555555566666


Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 045674          407 RLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFK  486 (650)
Q Consensus       407 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~  486 (650)
                      ++++|.+.++.+....+.. ...+....... .                   ..+.......+..+...+.+.+|...+.
T Consensus       102 ~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~-~-------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~  160 (323)
T d1fcha_         102 LQRQACEILRDWLRYTPAY-AHLVTPAEEGA-G-------------------GAGLGPSKRILGSLLSDSLFLEVKELFL  160 (323)
T ss_dssp             CHHHHHHHHHHHHHTSTTT-GGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHH
T ss_pred             cccccccchhhHHHhccch-HHHHHhhhhhh-h-------------------hcccccchhhHHHHHHhhHHHHHHHHHH
Confidence            6666666666555543221 00000000000 0                   0000111112223445566788888888


Q ss_pred             HHHHcCCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc
Q 045674          487 RMEDEGCD-QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP  565 (650)
Q Consensus       487 ~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  565 (650)
                      ++.+..+. .+...+..++..+...|++++|+..+++++...+. +...+..++.++...|++++|.+.++++++..|.+
T Consensus       161 ~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~  239 (323)
T d1fcha_         161 AAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQPGY  239 (323)
T ss_dssp             HHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhhcc
Confidence            88775433 45677888888899999999999999999876554 67888899999999999999999999999988888


Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          566 ETAFEDMITCLCKTGRIKEACKLADGIVDREREI-----------PGKIRTALINALRKAGNADLAIKL  623 (650)
Q Consensus       566 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~  623 (650)
                      ..++..++.+|...|++++|++.|+++++.. |.           ...+|..+..++...|+.+.+...
T Consensus       240 ~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~~~  307 (323)
T d1fcha_         240 IRSRYNLGISCINLGAHREAVEHFLEALNMQ-RKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAA  307 (323)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence            9999999999999999999999999998753 22           223556666677667766555433

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1.4e-12  Score=122.66  Aligned_cols=215  Identities=11%  Similarity=0.081  Sum_probs=147.8

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          394 TYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG-RVDEAEELFEEMVEKGCPRDSYCYNVLIDAL  472 (650)
Q Consensus       394 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  472 (650)
                      .++.+...+.+.+.+++|++.++++++.++. +...|+....++...| ++++|+..++.+++.. |.+..+|+.++.++
T Consensus        45 a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~  122 (315)
T d2h6fa1          45 VYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV  122 (315)
T ss_dssp             HHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence            4455555566677777777777777776655 6666777777766655 4777777777777764 66677777777777


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC-----
Q 045674          473 AKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK-----  547 (650)
Q Consensus       473 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-----  547 (650)
                      .+.|++++|+..++++++..+. +...|..++..+...|++++|+..++++++.++. +...|..++.++.+.+.     
T Consensus       123 ~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~-n~~a~~~r~~~l~~~~~~~~~~  200 (315)
T d2h6fa1         123 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVR-NNSVWNQRYFVISNTTGYNDRA  200 (315)
T ss_dssp             HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCSCSHH
T ss_pred             HhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCc-cHHHHHHHHHHHHHccccchhh
Confidence            7777777777777777776544 6777777777777777777777777777776544 56666666666655554     


Q ss_pred             -HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHh
Q 045674          548 -VARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRERE-IPGKIRTALINALRK  613 (650)
Q Consensus       548 -~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~l~~~~~~  613 (650)
                       +++|++.+.++++..|.+..+|..++..+... ..+++.+.++.+.+.... .+...+..++..|..
T Consensus       201 ~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~  267 (315)
T d2h6fa1         201 VLEREVQYTLEMIKLVPHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYED  267 (315)
T ss_dssp             HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHH
T ss_pred             hhHHhHHHHHHHHHhCCCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHH
Confidence             57788888888888788888887777665443 357777777777665422 234455556665543

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=7.6e-13  Score=124.53  Aligned_cols=203  Identities=8%  Similarity=0.047  Sum_probs=180.0

Q ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          427 AMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCG-KLDEALALFKRMEDEGCDQTVYTYTILIN  505 (650)
Q Consensus       427 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  505 (650)
                      ...++.+...+.+.+.+++|+++++.+++.. |.+...|+..+.++...| ++++|+..++++++..+. +..+|..++.
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~  120 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRV  120 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhH
Confidence            4567777888889999999999999999986 788899999999999876 599999999999998765 8999999999


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC----
Q 045674          506 GMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR----  581 (650)
Q Consensus       506 ~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~----  581 (650)
                      .+.+.|++++|+..++++++..+. +...|..+++++...|++++|++.++++++.+|.+..+|..++.++.+.|.    
T Consensus       121 ~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p~n~~a~~~r~~~l~~~~~~~~~  199 (315)
T d2h6fa1         121 LVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDVRNNSVWNQRYFVISNTTGYNDR  199 (315)
T ss_dssp             HHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred             HHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCCccHHHHHHHHHHHHHccccchh
Confidence            999999999999999999987665 788999999999999999999999999999999999999999999887776    


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          582 --IKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       582 --~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                        +++|++.+.++++.. |.+...|..++..+... ..+++.+.++++++..+.+
T Consensus       200 ~~~~~ai~~~~~al~~~-P~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~~  252 (315)
T d2h6fa1         200 AVLEREVQYTLEMIKLV-PHNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPSH  252 (315)
T ss_dssp             HHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTTC
T ss_pred             hhhHHhHHHHHHHHHhC-CCchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCCc
Confidence              689999999999987 77888898888776544 4688889999998877664

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.43  E-value=6.3e-11  Score=111.22  Aligned_cols=192  Identities=11%  Similarity=0.056  Sum_probs=158.5

Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 045674          441 GRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLW  520 (650)
Q Consensus       441 ~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~  520 (650)
                      +..++|..+|++.++...+.+...|..++..+.+.|+++.|..+|+++++..+......|..++..+.+.|+.++|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34678899999998765567788888899999999999999999999998755544567888898888999999999999


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-C
Q 045674          521 DMMIDKGITPTAASFRALSIGL-CLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRER-E  598 (650)
Q Consensus       521 ~~~~~~~~~p~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~  598 (650)
                      +++++.++. +...+...+... ...|+.+.|..+|+.+++..+.+...|..++..+...|++++|+.+|+++++... +
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            999987655 445555555433 4468999999999999998888999999999999999999999999999988641 2


Q ss_pred             C--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          599 I--PGKIRTALINALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       599 ~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      |  ....|...+..-...|+.+.+.++++++.+.-+.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~  273 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE  273 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTT
T ss_pred             hHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcc
Confidence            2  2357888888888899999999999999886543

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.43  E-value=6.4e-11  Score=114.16  Aligned_cols=271  Identities=13%  Similarity=0.049  Sum_probs=154.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHHcCCCcC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC----HHhH
Q 045674          325 YNLVIGGLCKVGKCIEGHAIFESMIRRGCQPN----VAIYTALIDSYAKLGSMNEAINIFERMKYEGV-EPD----EVTY  395 (650)
Q Consensus       325 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~p~----~~~~  395 (650)
                      .......+...|++++|..++++.++.....+    ...+..++.+|...|++++|+..|++...... .++    ...+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            33445666777777777777777776522211    23555667777777777777777777654210 111    2234


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC----CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHH
Q 045674          396 GVIISGLCKNERLEEAMQYFEFCRAN----GVAV---NAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG----CPRDSYC  464 (650)
Q Consensus       396 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~----~~~~~~~  464 (650)
                      ..+...+...|++..+...+......    ....   ....+..+...+...|+++.+...+.......    .......
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            45555666777777777777655431    1111   12234455666667777777777776666532    1122344


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCC----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---CHHHH
Q 045674          465 YNVLIDALAKCGKLDEALALFKRMEDEG--CDQ----TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITP---TAASF  535 (650)
Q Consensus       465 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p---~~~~~  535 (650)
                      +......+...+++..+...+.+.....  ...    ....+..+...+...|++++|...+++..+.....   ....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            5555566666677777766666554321  111    12234444555566677777777766665432221   12344


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhC----CCC--cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          536 RALSIGLCLSGKVARACKILDELAPK----GII--PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ..++.++...|++++|...++++...    +..  ...++..++.++...|++++|.+.++++++.
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l  320 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL  320 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            55666667777777777777666521    111  3455666677777777777777777776654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.42  E-value=1.9e-10  Score=110.76  Aligned_cols=271  Identities=13%  Similarity=-0.022  Sum_probs=190.8

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCC-cC----HHHH
Q 045674          290 YMTLIQACYLEGDFDSCLSLYHEMDEKGIEIP----SHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQ-PN----VAIY  360 (650)
Q Consensus       290 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~----~~~~  360 (650)
                      .......+...|++++|++++++..+.....+    ...+..+...+...|++++|...+++..+.... ++    ...+
T Consensus        15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~   94 (366)
T d1hz4a_          15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL   94 (366)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence            34445677889999999999999887643322    235667788888999999999999988764211 11    3355


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCCCHHH
Q 045674          361 TALIDSYAKLGSMNEAINIFERMKY----EGVEPD---EVTYGVIISGLCKNERLEEAMQYFEFCRANG----VAVNAMF  429 (650)
Q Consensus       361 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~  429 (650)
                      ..+...+...|++..+...+.+...    .+....   ...+..+...+...|+++.+...+.......    .......
T Consensus        95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  174 (366)
T d1hz4a_          95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC  174 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence            5677788888999999998887653    111111   2345566677888999999999888776542    2223455


Q ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC---CCHHHH
Q 045674          430 YSSLIDGLGKAGRVDEAEELFEEMVEKG--CPRD----SYCYNVLIDALAKCGKLDEALALFKRMEDEGCD---QTVYTY  500 (650)
Q Consensus       430 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~~~  500 (650)
                      +......+...++...+...+.+.....  ....    ...+..++..+...|++++|...+++..+....   .....+
T Consensus       175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~  254 (366)
T d1hz4a_         175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW  254 (366)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence            6667777888899999988888776531  1111    234566677788889999999988887664332   224456


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 045674          501 TILINGMFKEHRNEEALKLWDMMID----KGITPT-AASFRALSIGLCLSGKVARACKILDELAP  560 (650)
Q Consensus       501 ~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~  560 (650)
                      ..++.++...|++++|...+++++.    .+..|+ ...+..++.+|...|++++|.+.++++++
T Consensus       255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~  319 (366)
T d1hz4a_         255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK  319 (366)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            6678888899999999999988763    233333 34677788889999999999999988875

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.40  E-value=6.1e-12  Score=115.31  Aligned_cols=151  Identities=15%  Similarity=-0.034  Sum_probs=83.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 045674          372 SMNEAINIFERMKYEGVEPD---EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEE  448 (650)
Q Consensus       372 ~~~~A~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~  448 (650)
                      +.+.++..++++.......+   ..++..+..+|.+.|++++|+..|++.++..+. +..+|..++.++...|++++|+.
T Consensus        14 ~~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~   92 (259)
T d1xnfa_          14 QQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYE   92 (259)
T ss_dssp             HHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhh
Confidence            34455555555554321111   234555555666666666666666666665544 55666666666666666666666


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          449 LFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       449 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      .|+++++.. |.+..++..++.+|...|++++|...|++.++..+. +......+..++...+..+.+..+......
T Consensus        93 ~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  167 (259)
T d1xnfa_          93 AFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEK  167 (259)
T ss_dssp             HHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred             hhhHHHHHH-hhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence            666666654 445556666666666666666666666666655332 333333333344444444444444444443

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.40  E-value=1.1e-12  Score=125.51  Aligned_cols=235  Identities=9%  Similarity=-0.029  Sum_probs=154.3

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCCHHHH-HHHHHHHHHcCCHHH
Q 045674          369 KLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNE--RLEEAMQYFEFCRANGVAVNAMFY-SSLIDGLGKAGRVDE  445 (650)
Q Consensus       369 ~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~  445 (650)
                      ..|.+++|+.+++++.+...+ +...|..+..++...+  ++++|+..+..+.+..+. +...+ ......+...+.+++
T Consensus        85 ~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~  162 (334)
T d1dcea1          85 SAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAE  162 (334)
T ss_dssp             HHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHH
T ss_pred             HHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHH
Confidence            344567777777777665322 4555666655555544  467788788777776554 44443 344566666777888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045674          446 AEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMID  525 (650)
Q Consensus       446 A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~  525 (650)
                      |+..++.+++.+ +.+...|+.++.++.+.|++++|...++...+..  |+   ...+...+...+..+++...+.....
T Consensus       163 Al~~~~~~i~~~-p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~---~~~~~~~~~~l~~~~~a~~~~~~~l~  236 (334)
T d1dcea1         163 ELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVL--LK---ELELVQNAFFTDPNDQSAWFYHRWLL  236 (334)
T ss_dssp             HHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHH--HH---HHHHHHHHHHHCSSCSHHHHHHHHHH
T ss_pred             HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhH--HH---HHHHHHHHHHhcchhHHHHHHHHHHH
Confidence            888888777775 5677778888888888887777765555444321  11   11122334455666677777777776


Q ss_pred             CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          526 KGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRT  605 (650)
Q Consensus       526 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  605 (650)
                      ..+. +...+..++..+...|++++|...+.++.+.+|.+..++..++.++...|++++|+++++++++.+ |.+...|.
T Consensus       237 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ld-P~~~~y~~  314 (334)
T d1dcea1         237 GRAE-PLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD-PMRAAYLD  314 (334)
T ss_dssp             SCCC-CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHC-GGGHHHHH
T ss_pred             hCcc-hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-cccHHHHH
Confidence            5432 344455566666777888888888888887777777788888888888888888888888888775 44566666


Q ss_pred             HHHHHHHh
Q 045674          606 ALINALRK  613 (650)
Q Consensus       606 ~l~~~~~~  613 (650)
                      .+...+..
T Consensus       315 ~L~~~~~~  322 (334)
T d1dcea1         315 DLRSKFLL  322 (334)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHhH
Confidence            66665553

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.39  E-value=1.2e-12  Score=125.09  Aligned_cols=255  Identities=10%  Similarity=-0.003  Sum_probs=196.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCH-HhHHHHH---H-------HHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 045674          371 GSMNEAINIFERMKYEGVEPDE-VTYGVII---S-------GLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK  439 (650)
Q Consensus       371 ~~~~~A~~~~~~~~~~~~~p~~-~~~~~l~---~-------~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~  439 (650)
                      +..++|+++++++.+.  .|+. ..|+..-   .       .+...|++++|+.+++.+.+.+++ +...|..+..++..
T Consensus        43 ~~~~~al~~~~~~l~~--~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~  119 (334)
T d1dcea1          43 ELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSR  119 (334)
T ss_dssp             CCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHT
T ss_pred             cccHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHH
Confidence            3446777777777654  3442 2332222   1       133445678899999999888766 77888888877777


Q ss_pred             cC--CHHHHHHHHHHHHHcCCCCCHHHHH-HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          440 AG--RVDEAEELFEEMVEKGCPRDSYCYN-VLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA  516 (650)
Q Consensus       440 ~~--~~~~A~~~~~~~~~~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  516 (650)
                      .+  ++++|+..++.+++.. +.+...+. .....+...+.+++|+..++.+++.++. +...|+.++.++...|++++|
T Consensus       120 ~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A  197 (334)
T d1dcea1         120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS  197 (334)
T ss_dssp             CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCS
T ss_pred             hccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHH
Confidence            65  4899999999999985 55666654 5557778889999999999999998765 889999999999999999888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          517 LKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ...+++..+.  .|+   ...+...+...+..+++...+.......+.....+..++..+...|++++|+..+.+..+.+
T Consensus       198 ~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~  272 (334)
T d1dcea1         198 GPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRAEPLFRCELSVEKSTVLQSELESCKELQELEPEN  272 (334)
T ss_dssp             SSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred             HHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhC
Confidence            7666554442  111   12233445667888889999999998888877778888899999999999999999998775


Q ss_pred             CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChh
Q 045674          597 REIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMG  636 (650)
Q Consensus       597 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~  636 (650)
                       +.+..++..++.++...|++++|++.++++++..|....
T Consensus       273 -p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~  311 (334)
T d1dcea1         273 -KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAA  311 (334)
T ss_dssp             -HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHH
T ss_pred             -chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHH
Confidence             556788899999999999999999999999998775433

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=99.38  E-value=1.8e-11  Score=112.16  Aligned_cols=96  Identities=15%  Similarity=0.042  Sum_probs=46.5

Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          429 FYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMF  508 (650)
Q Consensus       429 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  508 (650)
                      +|..++.+|.+.|++++|+..|++.++.. |.++.+|+.++.+|.+.|++++|+..|+++++..+. +..++..++.++.
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~  116 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALY  116 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHH
Confidence            33444444555555555555555555443 444445555555555555555555555555444332 3344444444455


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 045674          509 KEHRNEEALKLWDMMIDK  526 (650)
Q Consensus       509 ~~~~~~~A~~~~~~~~~~  526 (650)
                      ..|++++|...|++.++.
T Consensus       117 ~~g~~~~A~~~~~~al~~  134 (259)
T d1xnfa_         117 YGGRDKLAQDDLLAFYQD  134 (259)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHHhh
Confidence            555555555555555443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=1.1e-09  Score=102.48  Aligned_cols=188  Identities=10%  Similarity=0.117  Sum_probs=152.1

Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 045674          406 ERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALF  485 (650)
Q Consensus       406 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~  485 (650)
                      +..++|..+|++..+...+.+...+...+..+...|+++.|..+|+.+++........+|..++..+.+.|+++.|.++|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34578888999888765555777888888899999999999999999988642233557889999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHH-HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC
Q 045674          486 KRMEDEGCDQTVYTYTILING-MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGII  564 (650)
Q Consensus       486 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~  564 (650)
                      +++.+.++. +...|...+.. +...|+.+.|..+|+.+++..+. +...+..++..+...|+++.|+.+|+++++..+.
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~-~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhh-hHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            999887554 44445444433 34568999999999999986444 6788999999999999999999999999987654


Q ss_pred             ----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          565 ----PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       565 ----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                          ...+|...+..-...|+.+.+.++++++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence                3457888888888999999999999998775

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=4.4e-10  Score=87.59  Aligned_cols=103  Identities=13%  Similarity=-0.007  Sum_probs=75.5

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGN  616 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  616 (650)
                      .-+..+...|++++|+..|+++++..|.+..+|..++.++...|++++|+..++++++.+ +.+...|..++.++...|+
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccC
Confidence            345667777777777777777777777777777777777777777777777777777776 6677777777777777777


Q ss_pred             HHHHHHHHHHHHHCCCCChhhhhh
Q 045674          617 ADLAIKLMHSKIGVGYDRMGSIKR  640 (650)
Q Consensus       617 ~~~A~~~~~~~~~~~~~~~~~~~~  640 (650)
                      +++|+..++++++..+........
T Consensus        87 ~~~A~~~~~~a~~~~p~~~~~~~~  110 (117)
T d1elwa_          87 FEEAKRTYEEGLKHEANNPQLKEG  110 (117)
T ss_dssp             HHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHH
Confidence            777777777777776665444433

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=3.1e-09  Score=91.07  Aligned_cols=122  Identities=15%  Similarity=-0.046  Sum_probs=68.2

Q ss_pred             HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 045674          469 IDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKV  548 (650)
Q Consensus       469 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~  548 (650)
                      +..+...|++++|++.|+++.    +++..+|..++.+|...|++++|++.|+++++.++. +...|..++.++.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence            445555666666666655431    235555555666666666666666666666655433 455555666666666666


Q ss_pred             HHHHHHHHHHhhCCCC----------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          549 ARACKILDELAPKGII----------------PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       549 ~~A~~~~~~~~~~~~~----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++|++.|++++...+.                ..+++..++.++.+.|++++|.+.++++++.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            6666666665543221                0234455555666666666666666655544

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.08  E-value=2.5e-09  Score=83.14  Aligned_cols=107  Identities=13%  Similarity=0.030  Sum_probs=89.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      .-+..+...|++++|+.+|+++++..+. +...|..++.++...|++++|+..++++++.+|.+...|..++.++...|+
T Consensus         8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~   86 (117)
T d1elwa_           8 EKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNR   86 (117)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccC
Confidence            3456678889999999999998887555 777888889999999999999999999998888888889999999999999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          582 IKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      +++|+..|+++++.. |.+..++..+..+
T Consensus        87 ~~~A~~~~~~a~~~~-p~~~~~~~~l~~l  114 (117)
T d1elwa_          87 FEEAKRTYEEGLKHE-ANNPQLKEGLQNM  114 (117)
T ss_dssp             HHHHHHHHHHHHTTC-TTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            999999999999876 6667666666554

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.04  E-value=7.4e-10  Score=96.55  Aligned_cols=100  Identities=11%  Similarity=-0.032  Sum_probs=76.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHH
Q 045674          495 QTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMIT  574 (650)
Q Consensus       495 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~  574 (650)
                      |+...+...+..+...|++++|+..|+++++..+. +...|..++.+|.+.|++++|+..++++++.+|.+..+|..++.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~   80 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ   80 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHH
Confidence            56666777777777888888888888877776544 66777777778888888888888888888777777777777888


Q ss_pred             HHHHcCCHHHHHHHHHHHHHc
Q 045674          575 CLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       575 ~~~~~g~~~~A~~~~~~~~~~  595 (650)
                      ++...|++++|+..|+++++.
T Consensus        81 ~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          81 CQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHh
Confidence            888888888888888877765

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.03  E-value=5.3e-09  Score=86.72  Aligned_cols=121  Identities=13%  Similarity=0.051  Sum_probs=95.3

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674          501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG  580 (650)
Q Consensus       501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  580 (650)
                      ...+..|.+.|++++|+..|+++++..+. +...|..++.++...|++++|...|+++++.+|.+..+|..++.++...|
T Consensus        14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          14 KTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcC
Confidence            33456678889999999999988887655 77888888889999999999999999999888888888999999999999


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH--HhcCCHHHHHHH
Q 045674          581 RIKEACKLADGIVDREREIPGKIRTALINAL--RKAGNADLAIKL  623 (650)
Q Consensus       581 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~  623 (650)
                      ++++|++.++++++.. |.+..++..+..+.  ...+.+++|+..
T Consensus        93 ~~~eA~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~~~a~~~  136 (159)
T d1a17a_          93 KFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAG  136 (159)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            9999999999998876 66677666665543  333445555543

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2e-09  Score=89.41  Aligned_cols=103  Identities=9%  Similarity=-0.064  Sum_probs=94.7

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKA  614 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~  614 (650)
                      +...+..+.+.|++++|+..|+++++.+|.+...|..++.++...|++++|+..|+++++.+ +.+..+|..++.++...
T Consensus        13 l~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~   91 (159)
T d1a17a_          13 LKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMAL   91 (159)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHc
Confidence            44457778999999999999999999999999999999999999999999999999999987 77889999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCChhhh
Q 045674          615 GNADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       615 g~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      |++++|+..++++++..+......
T Consensus        92 g~~~eA~~~~~~a~~~~p~~~~~~  115 (159)
T d1a17a_          92 GKFRAALRDYETVVKVKPHDKDAK  115 (159)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCCCHHHH
Confidence            999999999999999988755543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.98  E-value=1.2e-06  Score=79.31  Aligned_cols=223  Identities=13%  Similarity=0.014  Sum_probs=118.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045674          395 YGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYNVLID  470 (650)
Q Consensus       395 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~  470 (650)
                      +..+...+...+++++|+++|++..+.|   +...+..|..+|..    ..+...|...+......+   +......++.
T Consensus         5 ~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~~   78 (265)
T d1ouva_           5 LVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLGN   78 (265)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhcccc
Confidence            3333444444455555555555444443   33333334444443    334555555555554433   3333333333


Q ss_pred             HHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 045674          471 ALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILINGMF----KEHRNEEALKLWDMMIDKGITPTAASFRALSIGL  542 (650)
Q Consensus       471 ~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~  542 (650)
                      .+..    .++.+.|...++...+.|.   ......+...+.    .......+...+.+....   .+...+..++..+
T Consensus        79 ~~~~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~~  152 (265)
T d1ouva_          79 LYYSGQGVSQNTNKALQYYSKACDLKY---AEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSLY  152 (265)
T ss_dssp             HHHHTSSSCCCHHHHHHHHHHHHHTTC---HHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHHH
T ss_pred             ccccccccchhhHHHHHHHhhhhhhhh---hhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhhh
Confidence            3332    2345555555555555432   122222222222    233445555555555542   2445555555555


Q ss_pred             Hh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh-
Q 045674          543 CL----SGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDREREIPGKIRTALINALRK-  613 (650)
Q Consensus       543 ~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~-  613 (650)
                      ..    ..+...+..+++.+.+.+  +..+...++..+..    ..++++|+.+|+++.+.+   ++..+..|+..|.+ 
T Consensus       153 ~~~~~~~~~~~~~~~~~~~a~~~g--~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~~G  227 (265)
T d1ouva_         153 DAGRGTPKDLKKALASYDKACDLK--DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNG  227 (265)
T ss_dssp             HHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTT
T ss_pred             ccCCCcccccccchhhhhcccccc--ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHHcC
Confidence            53    345666677777766543  56666667666665    457788888888887765   45666677777664 


Q ss_pred             ---cCCHHHHHHHHHHHHHCCCCC
Q 045674          614 ---AGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       614 ---~g~~~~A~~~~~~~~~~~~~~  634 (650)
                         ..++++|.++|+++.+.|..+
T Consensus       228 ~g~~~n~~~A~~~~~kAa~~g~~~  251 (265)
T d1ouva_         228 EGVTRNEKQAIENFKKGCKLGAKG  251 (265)
T ss_dssp             SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred             CCCccCHHHHHHHHHHHHHCcCHH
Confidence               336777888888888877654

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.97  E-value=3.7e-08  Score=84.15  Aligned_cols=126  Identities=9%  Similarity=-0.067  Sum_probs=96.1

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHH
Q 045674          504 INGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIK  583 (650)
Q Consensus       504 ~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~  583 (650)
                      +..+...|++++|++.|.++    .+|+..++..++.++...|++++|++.|+++++.+|....+|..++.++.+.|+++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~   87 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYD   87 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHH
Confidence            44566788888888887754    24567777888888888888888888888888888888888888888888888888


Q ss_pred             HHHHHHHHHHHcCCCCC----------------HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045674          584 EACKLADGIVDREREIP----------------GKIRTALINALRKAGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       584 ~A~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      +|++.|++++... +.+                ..++..++.++.+.|++++|.+.++++++..+.+
T Consensus        88 ~A~~~~~kAl~~~-~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~  153 (192)
T d1hh8a_          88 LAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP  153 (192)
T ss_dssp             HHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHhC-ccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence            8888888877542 111                2556677888888888888888888888777664

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.95  E-value=3.7e-09  Score=81.39  Aligned_cols=92  Identities=12%  Similarity=0.041  Sum_probs=80.9

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 045674          536 RALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAG  615 (650)
Q Consensus       536 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  615 (650)
                      ..++..+.+.|++++|...+++++..+|.+..+|..++.++.+.|++++|+..++++++.+ |.+..+|..++.+|...|
T Consensus        20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g   98 (112)
T d1hxia_          20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH   98 (112)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCC
Confidence            3567778889999999999999998888889999999999999999999999999999887 778888999999999999


Q ss_pred             CHHHHHHHHHHHH
Q 045674          616 NADLAIKLMHSKI  628 (650)
Q Consensus       616 ~~~~A~~~~~~~~  628 (650)
                      ++++|++.+++.+
T Consensus        99 ~~~~A~~~l~~~l  111 (112)
T d1hxia_          99 NANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHh
Confidence            9999999988865

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=2.3e-09  Score=93.33  Aligned_cols=119  Identities=15%  Similarity=-0.021  Sum_probs=95.8

Q ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          460 RDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALS  539 (650)
Q Consensus       460 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~  539 (650)
                      |+...+...+..|.+.|++++|+..|+++++..+. +...|..++.+|...|++++|+..|+++++..+. +...|..++
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            67777888899999999999999999999888655 8888999999999999999999999999886544 677889999


Q ss_pred             HHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674          540 IGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG  580 (650)
Q Consensus       540 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  580 (650)
                      .+|...|++++|+..|+++++..|.+...+...+..+...+
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~~~  120 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIA  120 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence            99999999999999999998765543333333333333333

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.92  E-value=1.5e-08  Score=93.63  Aligned_cols=199  Identities=11%  Similarity=0.046  Sum_probs=127.4

Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHHHHHH
Q 045674          433 LIDGLGKAGRVDEAEELFEEMVEK----GC-PRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCD-----QTVYTYTI  502 (650)
Q Consensus       433 l~~~~~~~~~~~~A~~~~~~~~~~----~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-----~~~~~~~~  502 (650)
                      .+.+|...+++++|.+.|.++.+.    +- +.-..+|..++.+|.+.|++++|...+++..+....     ....++..
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  122 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFE  122 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHH
Confidence            355677777788888777777653    10 112356777788888888888888888776542111     11345555


Q ss_pred             HHHHHHh-cCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-------HHHH
Q 045674          503 LINGMFK-EHRNEEALKLWDMMIDK----GITP-TAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------ETAF  569 (650)
Q Consensus       503 l~~~~~~-~~~~~~A~~~~~~~~~~----~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~  569 (650)
                      ++..|.. .|++++|++.++++.+.    +-.+ ...++..++..+...|++++|..+++++....+..       ...+
T Consensus       123 l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~  202 (290)
T d1qqea_         123 LGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYF  202 (290)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHH
T ss_pred             HHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHH
Confidence            6666644 58888888888887642    1111 13356777888888889999999888888765442       2345


Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHh--cCCHHHHHHHHHHHHHCC
Q 045674          570 EDMITCLCKTGRIKEACKLADGIVDRERE-IP---GKIRTALINALRK--AGNADLAIKLMHSKIGVG  631 (650)
Q Consensus       570 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~~~  631 (650)
                      ...+.++...|+++.|.+.++++.+.... ++   ......++.++..  .+.+++|+..|.++.+.+
T Consensus       203 ~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~lD  270 (290)
T d1qqea_         203 LKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLD  270 (290)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCC
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcC
Confidence            56677777888889998888888766411 11   2234455555544  345788888877665543

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.88  E-value=5.6e-06  Score=74.74  Aligned_cols=221  Identities=11%  Similarity=-0.043  Sum_probs=129.0

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045674          359 IYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCK----NERLEEAMQYFEFCRANGVAVNAMFYSSLI  434 (650)
Q Consensus       359 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  434 (650)
                      .+..|...+...+++++|+++|++..+.|   +...+..|...|..    ..+...|...+......+   +......+.
T Consensus         4 ~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~---~~~a~~~l~   77 (265)
T d1ouva_           4 ELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   77 (265)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccc---ccchhhccc
Confidence            34445555555666666666666665543   33344444444443    345566666666555544   223333333


Q ss_pred             HHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          435 DGLGK----AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAK----CGKLDEALALFKRMEDEGCDQTVYTYTILING  506 (650)
Q Consensus       435 ~~~~~----~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  506 (650)
                      ..+..    ..+.+.|...++...+.|   .......+...+..    ......+...+......   .+...+..|+..
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL---NDGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT---TCHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhh---hhhHHHhhcccccCCCcccchhHHHHHHhhhhhcc---cccchhhhhhhh
Confidence            33332    345666666666666654   22223333333332    33455666666665553   255566666666


Q ss_pred             HHh----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH
Q 045674          507 MFK----EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARACKILDELAPKGIIPETAFEDMITCLCK  578 (650)
Q Consensus       507 ~~~----~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~  578 (650)
                      +..    ..+...+...++...+.|   +......++..+..    ..++++|..+|+++.+.|  ++..+..|+.+|..
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--~~~a~~~LG~~y~~  226 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--NGGGCFNLGAMQYN  226 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHT
T ss_pred             hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc--CHHHHHHHHHHHHc
Confidence            653    456667777777776643   55666666666654    457888888888888765  56677778887765


Q ss_pred             ----cCCHHHHHHHHHHHHHcC
Q 045674          579 ----TGRIKEACKLADGIVDRE  596 (650)
Q Consensus       579 ----~g~~~~A~~~~~~~~~~~  596 (650)
                          ..+.++|.++|+++.+.|
T Consensus       227 G~g~~~n~~~A~~~~~kAa~~g  248 (265)
T d1ouva_         227 GEGVTRNEKQAIENFKKGCKLG  248 (265)
T ss_dssp             TSSSSCCSTTHHHHHHHHHHHT
T ss_pred             CCCCccCHHHHHHHHHHHHHCc
Confidence                336788888888888776

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.83  E-value=5.8e-08  Score=81.03  Aligned_cols=86  Identities=9%  Similarity=-0.085  Sum_probs=73.3

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 045674          533 ASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALR  612 (650)
Q Consensus       533 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~  612 (650)
                      .++..++.+|.+.|++++|+..++++++.+|.+..++..++.++...|++++|+..|+++++.+ |.+..+...+..+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence            3566788889999999999999999999999999999999999999999999999999999987 668888877777766


Q ss_pred             hcCCHHH
Q 045674          613 KAGNADL  619 (650)
Q Consensus       613 ~~g~~~~  619 (650)
                      +.+...+
T Consensus       142 ~~~~~~~  148 (170)
T d1p5qa1         142 RIRRQLA  148 (170)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            5554443

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=9.5e-09  Score=79.87  Aligned_cols=97  Identities=11%  Similarity=0.102  Sum_probs=46.5

Q ss_pred             HHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHh
Q 045674          538 LSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG---RIKEACKLADGIVDREREIP-GKIRTALINALRK  613 (650)
Q Consensus       538 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~  613 (650)
                      ++..+...+++++|.+.|++++..+|.+..++..++.++.+.+   ++++|+.+++++++.+..++ ..++..++.+|.+
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~~   84 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYR   84 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHHH
Confidence            3334444455555555555555555555555555555554432   23345555555554331111 1244455555555


Q ss_pred             cCCHHHHHHHHHHHHHCCCCC
Q 045674          614 AGNADLAIKLMHSKIGVGYDR  634 (650)
Q Consensus       614 ~g~~~~A~~~~~~~~~~~~~~  634 (650)
                      .|++++|++.|+++++..|..
T Consensus        85 ~g~~~~A~~~~~~aL~~~P~~  105 (122)
T d1nzna_          85 LKEYEKALKYVRGLLQTEPQN  105 (122)
T ss_dssp             TTCHHHHHHHHHHHHHHCTTC
T ss_pred             HhhhHHHHHHHHHHHHhCcCC
Confidence            555555555555555554443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.80  E-value=1.4e-07  Score=86.84  Aligned_cols=196  Identities=12%  Similarity=0.083  Sum_probs=128.5

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHHHHHHH
Q 045674          399 ISGLCKNERLEEAMQYFEFCRAN----GVA-VNAMFYSSLIDGLGKAGRVDEAEELFEEMVEKG-----CPRDSYCYNVL  468 (650)
Q Consensus       399 ~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-----~~~~~~~~~~l  468 (650)
                      ...|...|++++|.+.|.++.+.    +-. .-..+|..++.+|.+.|++++|.+.++...+..     ......++..+
T Consensus        44 a~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l  123 (290)
T d1qqea_          44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL  123 (290)
T ss_dssp             HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHH
Confidence            34566777777777777766542    111 123567777888888888888888888766531     01113455666


Q ss_pred             HHHHHH-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HHHHH
Q 045674          469 IDALAK-CGKLDEALALFKRMEDE----GCDQ-TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT------AASFR  536 (650)
Q Consensus       469 ~~~~~~-~g~~~~A~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~------~~~~~  536 (650)
                      +..|.. .|++++|+..+++..+.    +..+ ...++..++..+...|++++|+..++++........      ...+.
T Consensus       124 ~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~  203 (290)
T d1qqea_         124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL  203 (290)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred             HHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHH
Confidence            666654 58999999988887542    1111 134577788889999999999999999886532211      12344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCC--c---HHHHHHHHHHHHH--cCCHHHHHHHHHHHHH
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGII--P---ETAFEDMITCLCK--TGRIKEACKLADGIVD  594 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~---~~~~~~l~~~~~~--~g~~~~A~~~~~~~~~  594 (650)
                      ..+..+...|+++.|...++++.+..+.  +   ...+..++.++..  .+.+++|+..|+++.+
T Consensus       204 ~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            5566677889999999999999887664  1   2345566666554  3458899988887654

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.76  E-value=4.1e-08  Score=75.29  Aligned_cols=91  Identities=12%  Similarity=-0.006  Sum_probs=78.0

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      .++..+.+.|++++|+..|+++++..+. +...+..++.++.+.|++++|+..++++++.+|.+..++..++.+|...|+
T Consensus        21 ~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~   99 (112)
T d1hxia_          21 EEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN   99 (112)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence            3566678889999999999998887555 778888888899999999999999999998888888999999999999999


Q ss_pred             HHHHHHHHHHHH
Q 045674          582 IKEACKLADGIV  593 (650)
Q Consensus       582 ~~~A~~~~~~~~  593 (650)
                      +++|++.+++.+
T Consensus       100 ~~~A~~~l~~~l  111 (112)
T d1hxia_         100 ANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHh
Confidence            999999988764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=4.7e-08  Score=75.84  Aligned_cols=104  Identities=13%  Similarity=0.118  Sum_probs=78.3

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCc--HHHHHHHHHHH
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGK---VARACKILDELAPKGIIP--ETAFEDMITCL  576 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~--~~~~~~l~~~~  576 (650)
                      .++..+...+++++|.+.|++++..++. +..++..+++++.+.++   +++|+.++++++..++.+  ..++..++.+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4566677788888888888888876555 77888888888876544   456888888888776653  35788888888


Q ss_pred             HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          577 CKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       577 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      .+.|++++|++.|+++++.+ |.+..+....
T Consensus        83 ~~~g~~~~A~~~~~~aL~~~-P~~~~A~~l~  112 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQTE-PQNNQAKELE  112 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence            88888888888888888876 5555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.72  E-value=4.9e-08  Score=77.03  Aligned_cols=96  Identities=13%  Similarity=0.060  Sum_probs=52.1

Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-------HHHHHHHHH
Q 045674          537 ALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIP-------GKIRTALIN  609 (650)
Q Consensus       537 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~-------~~~~~~l~~  609 (650)
                      .++..+.+.|++++|+..|+++++.+|.+..++..++.+|...|++++|++.++++++.+ +.+       ..++..++.
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~-~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVG-RENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-HHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHHH
Confidence            445555555666666666655555555555555555666666666666666655555432 111       123444555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          610 ALRKAGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       610 ~~~~~g~~~~A~~~~~~~~~~~~~  633 (650)
                      .+...+++++|++.+++.+.....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~~~~~  111 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLAEHRT  111 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCCC
T ss_pred             HHHHhCCHHHHHHHHHHHHhcCCC
Confidence            555555666666666555554433

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.69  E-value=2.6e-07  Score=75.34  Aligned_cols=76  Identities=11%  Similarity=-0.095  Sum_probs=56.1

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINA  610 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~  610 (650)
                      ++..++.+|.+.|++++|++.++++++.+|.+..+|..++.++...|++++|+..|+++++.+ |.+..+...+..+
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~-P~n~~~~~~l~~~  144 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELC  144 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence            456677777778888888888888887777777778888888888888888888888887775 5566665555444

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.67  E-value=4.4e-07  Score=75.53  Aligned_cols=87  Identities=8%  Similarity=-0.044  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      .+|+.+..+|.+.|++++|+..++++++..+. +...+..++.++...|++++|+..|+++++.+|.+..+...+..+..
T Consensus        63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  141 (170)
T d1p5qa1          63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ  141 (170)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            35677888899999999999999999987655 78899999999999999999999999999999998888888887776


Q ss_pred             HcCCHHHH
Q 045674          578 KTGRIKEA  585 (650)
Q Consensus       578 ~~g~~~~A  585 (650)
                      +.+...+.
T Consensus       142 ~~~~~~~~  149 (170)
T d1p5qa1         142 RIRRQLAR  149 (170)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            66554443

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.63  E-value=1.1e-06  Score=72.90  Aligned_cols=96  Identities=9%  Similarity=0.008  Sum_probs=78.9

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 045674          534 SFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRK  613 (650)
Q Consensus       534 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~  613 (650)
                      ++..++.+|.+.|++++|+..++++++.+|.+..++..++.++...|++++|++.|+++++.+ |.+..+...+..+...
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~~~  144 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQKK  144 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence            456688889999999999999999999999999999999999999999999999999999987 7788888777777666


Q ss_pred             cCCH-HHHHHHHHHHHHC
Q 045674          614 AGNA-DLAIKLMHSKIGV  630 (650)
Q Consensus       614 ~g~~-~~A~~~~~~~~~~  630 (650)
                      .+.. +...+.+.+|.++
T Consensus       145 ~~~~~e~~kk~~~~~f~~  162 (168)
T d1kt1a1         145 AKEHNERDRRTYANMFKK  162 (168)
T ss_dssp             HHHHHHHHHHHHHHHHHH
T ss_pred             HHhHHHHHHHHHHHHHhh
Confidence            5544 3455666655543

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=98.61  E-value=5.3e-07  Score=73.46  Aligned_cols=74  Identities=14%  Similarity=0.023  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhh
Q 045674          567 TAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRR  641 (650)
Q Consensus       567 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  641 (650)
                      .++..++.+|.+.|++++|++.++++++.+ |.+..+|..++.++...|++++|+..|+++++..|........+
T Consensus        68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l  141 (153)
T d2fbna1          68 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSY  141 (153)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHH
T ss_pred             HHHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            467789999999999999999999999997 78899999999999999999999999999999998866554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.61  E-value=3.6e-07  Score=76.19  Aligned_cols=87  Identities=8%  Similarity=-0.123  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      ...+..++.++.+.|++++|+..++++++.+|.+..+|..++.++...|++++|++.|+++++.+ |.+..+...+..+.
T Consensus        77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~  155 (169)
T d1ihga1          77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVK  155 (169)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence            44566778888889999999999999999888888899999999999999999999999999886 66777777776665


Q ss_pred             HhcCCHHH
Q 045674          612 RKAGNADL  619 (650)
Q Consensus       612 ~~~g~~~~  619 (650)
                      .+.....+
T Consensus       156 ~~l~~~~~  163 (169)
T d1ihga1         156 QKIKAQKD  163 (169)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            54444433

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.57  E-value=3.9e-08  Score=98.18  Aligned_cols=226  Identities=7%  Similarity=-0.080  Sum_probs=110.3

Q ss_pred             HHHHHHHHHHHcCCCcC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHH
Q 045674          340 EGHAIFESMIRRGCQPN-VAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEV-TYGVIISGLCKNERLEEAMQYFEF  417 (650)
Q Consensus       340 ~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~  417 (650)
                      +|.+.|+++.+.  +|+ ...+..+..+|...|++++|   |++++..  .|+.. .++.  ....-...+..+.+.++.
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~--dp~~a~~~~~--e~~Lw~~~y~~~ie~~r~   74 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVT--DLEYALDKKV--EQDLWNHAFKNQITTLQG   74 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHH--CHHHHHHHTH--HHHHHHHHTHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHc--ChhhHHHHhH--HHHHHHHHHHHHHHHHHH
Confidence            577778877765  333 33455567777777777765   5666543  22211 1111  111111123445566665


Q ss_pred             HHHCCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 045674          418 CRANGVAVNAMFY--SSLIDGLGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQ  495 (650)
Q Consensus       418 ~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~  495 (650)
                      ..+....++..-.  ..........+.++.|+..+....... +++...+..++..+.+.|+.++|...++......   
T Consensus        75 ~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---  150 (497)
T d1ya0a1          75 QAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---  150 (497)
T ss_dssp             HHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---
T ss_pred             hcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---
Confidence            5544322222111  111122233445555555555444432 4455666777777777777777777766655431   


Q ss_pred             CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Q 045674          496 TVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITC  575 (650)
Q Consensus       496 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~  575 (650)
                      ...++..++..+...|++++|...|+++.+..+. +...|+.++..+...|+..+|...|.+++...++-+.++..|+..
T Consensus       151 ~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~  229 (497)
T d1ya0a1         151 CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKA  229 (497)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHH
Confidence            1345666777777777777777777777776444 556777777777777777777777777777766667777777666


Q ss_pred             HHHc
Q 045674          576 LCKT  579 (650)
Q Consensus       576 ~~~~  579 (650)
                      +.+.
T Consensus       230 ~~~~  233 (497)
T d1ya0a1         230 LSKA  233 (497)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            6543

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=4.5e-07  Score=71.28  Aligned_cols=106  Identities=13%  Similarity=0.110  Sum_probs=80.2

Q ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCc-------HHHHHH
Q 045674          499 TYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIP-------ETAFED  571 (650)
Q Consensus       499 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~-------~~~~~~  571 (650)
                      .+..++..+...|++++|+..|+++++.++. +...+..++.+|.+.|++++|+..++++++.++.+       ..++..
T Consensus         6 ~~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~   84 (128)
T d1elra_           6 KEKELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (128)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence            3455677788888888888888888877554 67788888888888888888888888888654432       246677


Q ss_pred             HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045674          572 MITCLCKTGRIKEACKLADGIVDREREIPGKIRTAL  607 (650)
Q Consensus       572 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  607 (650)
                      ++.++...+++++|++.|++.+...  ++......+
T Consensus        85 lg~~~~~~~~~~~A~~~~~kal~~~--~~~~~~~~l  118 (128)
T d1elra_          85 IGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKC  118 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHhcC--CCHHHHHHH
Confidence            8888888899999999999988753  455544333

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.50  E-value=4e-07  Score=73.28  Aligned_cols=114  Identities=11%  Similarity=-0.064  Sum_probs=74.8

Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----------cCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc
Q 045674          510 EHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----------SGKVARACKILDELAPKGIIPETAFEDMITCLCKT  579 (650)
Q Consensus       510 ~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----------~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~  579 (650)
                      .+.+++|+..|+++++..+. +...+..++.++..          .+.+++|+..|+++++.+|.+..+|..++.+|...
T Consensus        10 ~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          10 ILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred             HccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHHc
Confidence            34445555555555544333 44444444444432          24457888888888888888888888888888766


Q ss_pred             C-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          580 G-----------RIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       580 g-----------~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                      |           ++++|.+.|+++++.+ |.+...+..+...       .+|.+++.++.++|+
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l~-P~~~~~~~~L~~~-------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDEQ-PDNTHYLKSLEMT-------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHH-------HTHHHHHHHHHHSSS
T ss_pred             ccchhhHHHHHHhHHHhhhhhhcccccC-CCHHHHHHHHHHH-------HHHHHHHHHHHHHhc
Confidence            5           3688999999999886 4455544444433       567777777777764

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=3.5e-08  Score=98.54  Aligned_cols=228  Identities=10%  Similarity=-0.067  Sum_probs=132.2

Q ss_pred             HHHHHHHHHHHCCCCCC-HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 045674          375 EAINIFERMKYEGVEPD-EVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAGRVDEAEELFEEM  453 (650)
Q Consensus       375 ~A~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  453 (650)
                      +|.++|++....  +|+ ...+..+..++...|++++|   |++++..++. ....++.... +. ...+..+.+.++..
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~-Lw-~~~y~~~ie~~r~~   75 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQD-LW-NHAFKNQITTLQGQ   75 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHH-HH-HHHTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHH-HH-HHHHHHHHHHHHHh
Confidence            688888888764  444 34566667777778888776   6666654322 1111111111 11 11244566777766


Q ss_pred             HHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045674          454 VEKGCPRDSYCY--NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPT  531 (650)
Q Consensus       454 ~~~~~~~~~~~~--~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~  531 (650)
                      .+....++..-.  ..+...+...+.++.++..+....+..+ ++...+..++..+.+.|+.++|...+.+....  . .
T Consensus        76 ~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~-~  151 (497)
T d1ya0a1          76 AKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVDL-PCRVKSSQLGIISNKQTHTSAIVKPQSSSCSY--I-C  151 (497)
T ss_dssp             HSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHH--H-H
T ss_pred             cccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCh-hhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCC--C-H
Confidence            654322332211  1122223345566666666665554432 35667778888888999999999888877653  2 2


Q ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          532 AASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       532 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      ..++..++..+...|++++|..+|+++.+..|.+...|+.+|.++...|+..+|+..|.+++... +|.+.++..|...+
T Consensus       152 ~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~  230 (497)
T d1ya0a1         152 QHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKAL  230 (497)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHH
Confidence            35777889999999999999999999999999999999999999999999999999999999887 77888888888877


Q ss_pred             HhcC
Q 045674          612 RKAG  615 (650)
Q Consensus       612 ~~~g  615 (650)
                      .+..
T Consensus       231 ~~~~  234 (497)
T d1ya0a1         231 SKAL  234 (497)
T ss_dssp             HHHT
T ss_pred             HHhh
Confidence            6544

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.48  E-value=8.4e-07  Score=73.84  Aligned_cols=76  Identities=8%  Similarity=-0.016  Sum_probs=67.7

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhhhhh
Q 045674          565 PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSIKRR  641 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  641 (650)
                      ....+..++.++.+.|++++|+..++++++.+ |.+..+|..++.+|...|++++|+..|+++++..+........+
T Consensus        76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l  151 (169)
T d1ihga1          76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAEL  151 (169)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred             hHHHHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHH
Confidence            55678889999999999999999999999987 78899999999999999999999999999999988765544433

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=98.43  E-value=4.9e-06  Score=68.87  Aligned_cols=95  Identities=11%  Similarity=0.042  Sum_probs=77.8

Q ss_pred             HHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Q 045674          498 YTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLC  577 (650)
Q Consensus       498 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  577 (650)
                      ..|+.+..+|.+.|++++|+..++++++..+. +...+..++.++...|++++|...|+++++.+|.+..+...+..+..
T Consensus        65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence            34666788889999999999999999987655 78899999999999999999999999999999999988888888776


Q ss_pred             HcCCHHH-HHHHHHHHH
Q 045674          578 KTGRIKE-ACKLADGIV  593 (650)
Q Consensus       578 ~~g~~~~-A~~~~~~~~  593 (650)
                      ..+...+ ..+++.+|.
T Consensus       144 ~~~~~~e~~kk~~~~~f  160 (168)
T d1kt1a1         144 KAKEHNERDRRTYANMF  160 (168)
T ss_dssp             HHHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHH
Confidence            6665443 444444443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.35  E-value=5.7e-06  Score=68.79  Aligned_cols=124  Identities=12%  Similarity=-0.007  Sum_probs=74.0

Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcC
Q 045674          501 TILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTG  580 (650)
Q Consensus       501 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  580 (650)
                      ...+......|++++|.+.|.++++.-..+-..-        ...+.+  +...-..+..   ....++..++.++...|
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~~--------~~~~~w--~~~~r~~l~~---~~~~a~~~la~~~~~~g   81 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLDD--------LRDFQF--VEPFATALVE---DKVLAHTAKAEAEIACG   81 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTGG--------GTTSTT--HHHHHHHHHH---HHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCccccccc--------CcchHH--HHHHHHHHHH---HHHHHHHHHHHHHHHCC
Confidence            3445566788889998888888886421110000        000000  0000011100   12345666777777777


Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCChhhh
Q 045674          581 RIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIG-----VGYDRMGSI  638 (650)
Q Consensus       581 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~  638 (650)
                      ++++|+..++++++.+ |.+...|..++.+|...|++++|++.|+++.+     .|.+|...+
T Consensus        82 ~~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l  143 (179)
T d2ff4a2          82 RASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  143 (179)
T ss_dssp             CHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             CchHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence            7777777777777776 66777777777777777777777777777633     567765543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=98.34  E-value=4.4e-07  Score=81.04  Aligned_cols=131  Identities=12%  Similarity=-0.056  Sum_probs=101.4

Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHH
Q 045674          507 MFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEAC  586 (650)
Q Consensus       507 ~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~  586 (650)
                      ..+.|++++|+..+++.++..+. |...+..++..++..|++++|.+.++.+.+..|.....+..++.++...+..+++.
T Consensus         6 aL~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a~   84 (264)
T d1zbpa1           6 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDFA   84 (264)
T ss_dssp             HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHHH
Confidence            35679999999999999998766 88899999999999999999999999999998888888888888877666666654


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674          587 KLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       587 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      .........+.+++...+...+..+...|+.++|.+.++++.+..+......
T Consensus        85 ~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~  136 (264)
T d1zbpa1          85 QGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLA  136 (264)
T ss_dssp             TSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEE
T ss_pred             HHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCccc
Confidence            4433332222122334445567778889999999999999999887754443

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.34  E-value=5.2e-07  Score=72.56  Aligned_cols=100  Identities=11%  Similarity=-0.035  Sum_probs=85.7

Q ss_pred             HHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045674          542 LCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKT----------GRIKEACKLADGIVDREREIPGKIRTALINAL  611 (650)
Q Consensus       542 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~  611 (650)
                      |-+.+.+++|++.++.+++.+|.+..++..++.++...          +.+++|+..|+++++.+ |.+..+|..++.+|
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~-P~~~~a~~~lG~~y   85 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY   85 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhc-chhhHHHhhHHHHH
Confidence            45667899999999999999999999999999999854          45689999999999997 88899999999999


Q ss_pred             HhcCC-----------HHHHHHHHHHHHHCCCCChhhhhhhh
Q 045674          612 RKAGN-----------ADLAIKLMHSKIGVGYDRMGSIKRRV  642 (650)
Q Consensus       612 ~~~g~-----------~~~A~~~~~~~~~~~~~~~~~~~~~~  642 (650)
                      ...|+           +++|.+.|+++++..|......+.+-
T Consensus        86 ~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~  127 (145)
T d1zu2a1          86 TSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLE  127 (145)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             HHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHH
Confidence            87653           69999999999999887665555443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=8.8e-07  Score=65.10  Aligned_cols=71  Identities=6%  Similarity=-0.011  Sum_probs=33.0

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045674          535 FRALSIGLCLSGKVARACKILDELAPKGII-------PETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTA  606 (650)
Q Consensus       535 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~  606 (650)
                      +..++..+.+.|++++|..+|+++++..+.       ...++..++.++.+.|++++|++.++++++.+ |.+..++..
T Consensus         8 c~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a~~N   85 (95)
T d1tjca_           8 SFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRANGN   85 (95)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHHHHH
Confidence            334455555555555555555555432111       13344445555555555555555555555443 333443333

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.21  E-value=0.0015  Score=59.44  Aligned_cols=136  Identities=10%  Similarity=-0.043  Sum_probs=76.9

Q ss_pred             CChHHHHHHHHhccCCCChhHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 045674          109 LSPNFVSFVLRNHDVSKRPNVGLRLFTWAARQKKYSHNLECYISLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSL  188 (650)
Q Consensus       109 ~~~~~~~~~l~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l  188 (650)
                      .+...+..+...|...|.++.|..++....          -|..++..+.+.+++..|..++.+.-      +..+|..+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~   75 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEV   75 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHH
Confidence            334455566677777788888887777432          25567777778888888777665442      66677777


Q ss_pred             HHHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcC
Q 045674          189 IKSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVNSMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVG  266 (650)
Q Consensus       189 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g  266 (650)
                      ...+.+......+     .+.......+......++..|...|.+++...+++...... ..+...++.++..|++.+
T Consensus        76 ~~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          76 CFACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred             HHHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence            7777776655443     12222233455555667777777788888777777765432 445666777777777643

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.16  E-value=6.3e-06  Score=60.33  Aligned_cols=84  Identities=10%  Similarity=0.031  Sum_probs=64.9

Q ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674          565 PETAFEDMITCLCKTGRIKEACKLADGIVDRER-----EI-PGKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-----~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      +.+.+..+|..+.+.|++++|+..|+++++...     .+ ...++..++.++.+.|++++|+..++++++..|......
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~   83 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN   83 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHH
Confidence            345566788888888999999888888876520     11 246788888888889999999999999988888888888


Q ss_pred             hhhhcccccc
Q 045674          639 KRRVKFRSLV  648 (650)
Q Consensus       639 ~~~~~~~~~~  648 (650)
                      +++..|+.++
T Consensus        84 ~Nl~~~~~~l   93 (95)
T d1tjca_          84 GNLKYFEYIM   93 (95)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            8877776654

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=98.15  E-value=3.4e-05  Score=63.93  Aligned_cols=128  Identities=12%  Similarity=0.086  Sum_probs=91.8

Q ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 045674          466 NVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLS  545 (650)
Q Consensus       466 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~  545 (650)
                      ...+......|++++|...|.+.+.....+ ..      .. ...+.+  +...-..+...    ....+..++..+...
T Consensus        15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~-~l------~~-~~~~~w--~~~~r~~l~~~----~~~a~~~la~~~~~~   80 (179)
T d2ff4a2          15 KTAGVHAAAAGRFEQASRHLSAALREWRGP-VL------DD-LRDFQF--VEPFATALVED----KVLAHTAKAEAEIAC   80 (179)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTTCCSS-TT------GG-GTTSTT--HHHHHHHHHHH----HHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhCccc-cc------cc-CcchHH--HHHHHHHHHHH----HHHHHHHHHHHHHHC
Confidence            445567888999999999999998852111 00      00 001111  11111111111    235667788999999


Q ss_pred             CCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----cCCCCCHHHHHHH
Q 045674          546 GKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVD-----REREIPGKIRTAL  607 (650)
Q Consensus       546 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~~~~~l  607 (650)
                      |++++|+..+++++..+|.+...|..++.+|...|++++|++.|+++.+     .|+.|...+....
T Consensus        81 g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~~l~  147 (179)
T d2ff4a2          81 GRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRALN  147 (179)
T ss_dssp             TCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHHH
T ss_pred             CCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHHHHH
Confidence            9999999999999999999999999999999999999999999999843     5888887754433

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=98.04  E-value=3.2e-05  Score=62.86  Aligned_cols=94  Identities=12%  Similarity=-0.025  Sum_probs=63.2

Q ss_pred             HHHHHhcCCHHHHHHHHHHHhhCCCC------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCC-
Q 045674          539 SIGLCLSGKVARACKILDELAPKGII------------PETAFEDMITCLCKTGRIKEACKLADGIVDRE-----REIP-  600 (650)
Q Consensus       539 ~~~~~~~g~~~~A~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~-  600 (650)
                      +..+...|++++|+..|+++++..+.            ....|..++.+|...|++++|.+.++++++..     ..++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            44455667777777777777653322            12457778888888888888888888877531     1111 


Q ss_pred             ----HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          601 ----GKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       601 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                          ..++..++.+|...|++++|+..|+++++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~  131 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIE  131 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhH
Confidence                22466678888888888888888888887643

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.97  E-value=0.0059  Score=55.40  Aligned_cols=136  Identities=13%  Similarity=0.104  Sum_probs=72.8

Q ss_pred             CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHH
Q 045674          285 PDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALI  364 (650)
Q Consensus       285 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~  364 (650)
                      ||..-...++..|.+.|.++.|..+|..+.         -|..++..+.+.+++..|.+++.+.-      +..+|..+.
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~   76 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC   76 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence            454455556666777777777777776442         25566667777777777776665432      455666677


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 045674          365 DSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNAMFYSSLIDGLGKAG  441 (650)
Q Consensus       365 ~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~  441 (650)
                      ..+.+.....-+     .+.......+......++..|-..|.+++...+++...... ..+...++.++.+|++.+
T Consensus        77 ~~l~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~-~~~~~~~~~L~~lyak~~  147 (336)
T d1b89a_          77 FACVDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFK  147 (336)
T ss_dssp             HHHHHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTC
T ss_pred             HHHHhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCC-ccchHHHHHHHHHHHHhC
Confidence            777666555433     12222223355555667777777777777777777665432 235666677777776654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.92  E-value=3.2e-05  Score=62.86  Aligned_cols=97  Identities=19%  Similarity=0.030  Sum_probs=66.1

Q ss_pred             HHHHH--HHHHHhcCCHHHHHHHHHHHHHCCCC-C----------CHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCC---
Q 045674          499 TYTIL--INGMFKEHRNEEALKLWDMMIDKGIT-P----------TAASFRALSIGLCLSGKVARACKILDELAPKG---  562 (650)
Q Consensus       499 ~~~~l--~~~~~~~~~~~~A~~~~~~~~~~~~~-p----------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---  562 (650)
                      +|..+  +..+...|++++|+..|++.++.... |          ....|..++.+|...|++++|...+++++...   
T Consensus         9 a~~~l~~g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~   88 (156)
T d2hr2a1           9 AYLALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRR   88 (156)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccc
Confidence            34444  33445667777777777777642111 1          13467778888888888888888888877421   


Q ss_pred             ----CC----cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          563 ----II----PETAFEDMITCLCKTGRIKEACKLADGIVDR  595 (650)
Q Consensus       563 ----~~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  595 (650)
                          +.    ...++..++.+|...|++++|++.|+++++.
T Consensus        89 ~~~~~~~~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l  129 (156)
T d2hr2a1          89 GELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEM  129 (156)
T ss_dssp             CCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             ccccccccchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHHh
Confidence                11    1235777899999999999999999998765

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.88  E-value=1.3e-05  Score=71.24  Aligned_cols=52  Identities=21%  Similarity=0.312  Sum_probs=27.1

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 045674          439 KAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDE  491 (650)
Q Consensus       439 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  491 (650)
                      +.|++++|+..+++.++.. |.|...+..++..|+..|++++|.+.|+...+.
T Consensus         8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l   59 (264)
T d1zbpa1           8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL   59 (264)
T ss_dssp             TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence            3455555555555555543 445555555555555555555555555555544

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.62  E-value=0.00095  Score=51.90  Aligned_cols=112  Identities=8%  Similarity=-0.023  Sum_probs=68.4

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHH
Q 045674          512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCK----TGRIKEACK  587 (650)
Q Consensus       512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~  587 (650)
                      ++++|++.|++..+.|..   .....++  .....+.++|.++++++.+.+  ++.....|+..|..    ..+.++|.+
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g--~~~a~~~Lg~~y~~g~~~~~d~~~A~~   80 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN--SGNGCRFLGDFYENGKYVKKDLRKAAQ   80 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc--chhhhhhHHHhhhhccccchhhHHHHH
Confidence            455666666666655422   1122222  123456677777777777654  55556666666654    345777788


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045674          588 LADGIVDREREIPGKIRTALINALRK----AGNADLAIKLMHSKIGVGYD  633 (650)
Q Consensus       588 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~  633 (650)
                      +|+++.+.+   ++.....|+..|..    ..+.++|.++++++.+.|..
T Consensus        81 ~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~  127 (133)
T d1klxa_          81 YYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE  127 (133)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred             HHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence            887777654   44555666666665    35777888888887777654

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=97.25  E-value=0.015  Score=42.38  Aligned_cols=138  Identities=15%  Similarity=0.232  Sum_probs=76.4

Q ss_pred             HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 045674          474 KCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDK-GITPTAASFRALSIGLCLSGKVARAC  552 (650)
Q Consensus       474 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~p~~~~~~~l~~~~~~~g~~~~A~  552 (650)
                      -.|..++..+++.+....   .+..-||-++.-....-+-+-..+.++.+-+. .+.| ...+..++.++...+.     
T Consensus        14 ldG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~-C~Nlk~vv~C~~~~n~-----   84 (161)
T d1wy6a1          14 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK-CQNLKSVVECGVINNT-----   84 (161)
T ss_dssp             HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG-CSCTHHHHHHHHHTTC-----
T ss_pred             HhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh-hhcHHHHHHHHHHhcc-----
Confidence            346666666666666553   24445555555455555555555555444321 1110 0011122222222221     


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLAIKLMHSKIGVGY  632 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~  632 (650)
                                  ..+.+......+...|+-++-.++++.+++.+ ++++.....++.+|.+.|...++-+++.++.++|.
T Consensus        85 ------------~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~  151 (161)
T d1wy6a1          85 ------------LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE  151 (161)
T ss_dssp             ------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             ------------hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence                        33444445556677777777777777766654 67777777777777777777777777777777776


Q ss_pred             C
Q 045674          633 D  633 (650)
Q Consensus       633 ~  633 (650)
                      .
T Consensus       152 K  152 (161)
T d1wy6a1         152 K  152 (161)
T ss_dssp             H
T ss_pred             H
Confidence            4

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=97.15  E-value=0.0071  Score=46.67  Aligned_cols=110  Identities=8%  Similarity=-0.002  Sum_probs=67.1

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHH
Q 045674          477 KLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCL----SGKVARAC  552 (650)
Q Consensus       477 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~  552 (650)
                      ++++|++.|++..+.|..   .....|.  .....+.++|...+++..+.|   +......++..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            445555666555554421   1112222  123456677777777777654   44555556665553    34677888


Q ss_pred             HHHHHHhhCCCCcHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcC
Q 045674          553 KILDELAPKGIIPETAFEDMITCLCK----TGRIKEACKLADGIVDRE  596 (650)
Q Consensus       553 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~  596 (650)
                      ++|+++.+.+  ++.....|+..|..    ..+.++|.++|+++.+.|
T Consensus        80 ~~~~~aa~~g--~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_          80 QYYSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred             HHHhhhhccC--cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence            8888887764  55666677777665    457888888888887766

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.02  E-value=0.0055  Score=45.48  Aligned_cols=74  Identities=19%  Similarity=0.117  Sum_probs=50.5

Q ss_pred             CCCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHhhCCCCc-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          528 ITPTAASFRALSIGLCLSGK---VARACKILDELAPKGIIP-ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGK  602 (650)
Q Consensus       528 ~~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~  602 (650)
                      ..++..+-..++|++.+..+   .++++.+++++.+.++.+ .+.+..|+.++.+.|++++|.++++++++.. |.+..
T Consensus        31 ~~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie-P~n~q  108 (124)
T d2pqrb1          31 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE-RNNKQ  108 (124)
T ss_dssp             GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             CCCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC-CCcHH
Confidence            44566677777777776543   456777777777665553 4677777777777888888888877777765 43433

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=96.76  E-value=0.054  Score=39.40  Aligned_cols=140  Identities=13%  Similarity=0.112  Sum_probs=84.3

Q ss_pred             HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          437 LGKAGRVDEAEELFEEMVEKGCPRDSYCYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEA  516 (650)
Q Consensus       437 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A  516 (650)
                      +...|.+++..+++.+....   .+..-||.++.-....-+-+...++++.+-+. +  |.          ...++....
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~-F--Dl----------s~C~Nlk~v   75 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY-F--DL----------DKCQNLKSV   75 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG-S--CG----------GGCSCTHHH
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhh-c--Cc----------hhhhcHHHH
Confidence            44567788888888777764   35555666665555556666666666655332 1  10          112222222


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 045674          517 LKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGRIKEACKLADGIVDRE  596 (650)
Q Consensus       517 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~  596 (650)
                      ...+-.+     .-+...++..+..+..+|+-++-.+++..+.+.+-.+++.+..++.+|.+.|...++-+++.++.+.|
T Consensus        76 v~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          76 VECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            2222211     11334455555666777777777777777777655677788888888888888888888888877776


Q ss_pred             C
Q 045674          597 R  597 (650)
Q Consensus       597 ~  597 (650)
                      .
T Consensus       151 ~  151 (161)
T d1wy6a1         151 E  151 (161)
T ss_dssp             C
T ss_pred             H
Confidence            3

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.75  E-value=0.0098  Score=44.07  Aligned_cols=73  Identities=12%  Similarity=-0.014  Sum_probs=61.4

Q ss_pred             cHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCChhhh
Q 045674          565 PETAFEDMITCLCKTGR---IKEACKLADGIVDREREIP-GKIRTALINALRKAGNADLAIKLMHSKIGVGYDRMGSI  638 (650)
Q Consensus       565 ~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~  638 (650)
                      ...+-..+++++.+..+   .++|+.+++++.+.+ +.+ ...+..++.+|.+.|++++|++.++++++..|......
T Consensus        34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA~  110 (124)
T d2pqrb1          34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG  110 (124)
T ss_dssp             CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred             CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHHH
Confidence            67788889999987754   678999999999865 444 46888999999999999999999999999988865544

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.68  E-value=0.9  Score=42.83  Aligned_cols=418  Identities=11%  Similarity=0.015  Sum_probs=188.5

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH--cCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 045674          152 SLIDCLALCGDVDRVRLVFNELKEKGFLMTVSAANSLIKSFG--GLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN  229 (650)
Q Consensus       152 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~  229 (650)
                      ..+.-..+.|+...+..+...+..  .+  ...|...-..-.  ......+...++++-..  .+.........+..+.+
T Consensus        11 ~~a~~a~~~~~~~~~~~~~~~L~d--yp--L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~--~P~~~~lr~~~l~~L~~   84 (450)
T d1qsaa1          11 AQIKQAWDNRQMDVVEQMMPGLKD--YP--LYPYLEYRQITDDLMNQPAVTVTNFVRANPT--LPPARTLQSRFVNELAR   84 (450)
T ss_dssp             HHHHHHHHTTCHHHHHHHSGGGTT--ST--THHHHHHHHHHHTGGGCCHHHHHHHHHHCTT--CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHhhhcC--CC--CHHHHHHHHHHhccccCCHHHHHHHHHHCCC--ChhHHHHHHHHHHHHHh
Confidence            445556677777777777777632  22  222332222222  22344444333332111  01111122333455666


Q ss_pred             cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCChhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 045674          230 SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGKTQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSL  309 (650)
Q Consensus       230 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~  309 (650)
                      .++++.....+.     ..+.+...-.....+....|+.++|...+..+-..|.. ..                +.+..+
T Consensus        85 ~~~w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p----------------~~c~~l  142 (450)
T d1qsaa1          85 REDWRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP----------------NACDKL  142 (450)
T ss_dssp             TTCHHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC----------------THHHHH
T ss_pred             ccCHHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc----------------hHHHHH
Confidence            676655443221     11334555556667777778877777777766554421 11                222233


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHHHHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045674          310 YHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFESMIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVE  389 (650)
Q Consensus       310 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~  389 (650)
                      +..+...|. .+...+-.-+......|+...|..+...+-..    .......++........+.   ....   ..  .
T Consensus       143 ~~~~~~~~~-lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p~~~~---~~~~---~~--~  209 (450)
T d1qsaa1         143 FSVWRASGK-QDPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNPNTVL---TFAR---TT--G  209 (450)
T ss_dssp             HHHHHHTTC-SCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCGGGHH---HHHH---HS--C
T ss_pred             HHHHHhcCC-CCHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhChHhHH---HHHh---cC--C
Confidence            333333322 23333333334444555555555554432211    2222233333322211111   1111   11  1


Q ss_pred             CCHHhHHHHHHHHHh--cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH----HHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 045674          390 PDEVTYGVIISGLCK--NERLEEAMQYFEFCRANGVAVNAMFYSSLID----GLGKAGRVDEAEELFEEMVEKGCPRDSY  463 (650)
Q Consensus       390 p~~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~A~~~~~~~~~~~~~~~~~  463 (650)
                      .+......+..++.+  ..+.+.+...+......... +......+..    .....+..+.+...+......+  .+..
T Consensus       210 ~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~--~~~~  286 (450)
T d1qsaa1         210 ATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTS  286 (450)
T ss_dssp             CCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHH
T ss_pred             CChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhcccc--cchH
Confidence            122222222222221  23555666666555443222 2221211111    1222344555666665555542  3444


Q ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045674          464 CYNVLIDALAKCGKLDEALALFKRMEDEGCDQTVYTYTILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLC  543 (650)
Q Consensus       464 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~  543 (650)
                      .....+......+++..+...+..+... ......-.--++.++...|+.++|...|..+...   ++  .|..++.  .
T Consensus       287 ~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~---~~--fYG~LAa--~  358 (450)
T d1qsaa1         287 LIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---RG--FYPMVAA--Q  358 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---CS--HHHHHHH--H
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC---CC--hHHHHHH--H
Confidence            4444444455566777777666665432 1112333334556666777777777777766532   22  2222221  1


Q ss_pred             hcCCHHHHHHHHHHHhhCCCCc---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCHHHH
Q 045674          544 LSGKVARACKILDELAPKGIIP---ETAFEDMITCLCKTGRIKEACKLADGIVDREREIPGKIRTALINALRKAGNADLA  620 (650)
Q Consensus       544 ~~g~~~~A~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  620 (650)
                      +.|..-.   +-..-.......   ...-...+..+...|+..+|...|..+...   .+......++....+.|.++.|
T Consensus       359 ~Lg~~~~---~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~~la~lA~~~g~~~~a  432 (450)
T d1qsaa1         359 RIGEEYE---LKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQAQLARYAFNNQWWDLS  432 (450)
T ss_dssp             HTTCCCC---CCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HcCCCCC---CCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHHHHHHHHHHCCChhHH
Confidence            2221100   000000000000   001123456677888888888888877643   3455566777778888888888


Q ss_pred             HHHHHHH
Q 045674          621 IKLMHSK  627 (650)
Q Consensus       621 ~~~~~~~  627 (650)
                      +....++
T Consensus       433 I~a~~~~  439 (450)
T d1qsaa1         433 VQATIAG  439 (450)
T ss_dssp             HHHHHHT
T ss_pred             HHHHHHH
Confidence            8776665

>d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Bacterial muramidases
family: Bacterial muramidases
domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain
species: Escherichia coli [TaxId: 562]

Probab=95.00  E-value=1.5  Score=41.25  Aligned_cols=385  Identities=11%  Similarity=0.005  Sum_probs=198.9

Q ss_pred             HHHHcCCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh--cCChhHHHHHHHHHhcCCCCCChhhHHHHHHHHHHcCC
Q 045674          190 KSFGGLGMVEELLWVWRSMKENGIEPSLYTYNFLMNGLVN--SMFIESSELVFKVMENGKVGPDVVTYNTMIKGYCKVGK  267 (650)
Q Consensus       190 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  267 (650)
                      .-..+.|+.+.+..+...+...   | ...|...-..-..  ....++...+++.-.+.  +.....-...+..+.+.++
T Consensus        14 ~~a~~~~~~~~~~~~~~~L~dy---p-L~pYl~~~~l~~~~~~~~~~~i~~Fl~~~p~~--P~~~~lr~~~l~~L~~~~~   87 (450)
T d1qsaa1          14 KQAWDNRQMDVVEQMMPGLKDY---P-LYPYLEYRQITDDLMNQPAVTVTNFVRANPTL--PPARTLQSRFVNELARRED   87 (450)
T ss_dssp             HHHHHTTCHHHHHHHSGGGTTS---T-THHHHHHHHHHHTGGGCCHHHHHHHHHHCTTC--HHHHHHHHHHHHHHHHTTC
T ss_pred             HHHHHCCCHHHHHHHHhhhcCC---C-CHHHHHHHHHHhccccCCHHHHHHHHHHCCCC--hhHHHHHHHHHHHHHhccC
Confidence            3345678888877777776321   2 2233322222112  22344444444332211  1111222334556677777


Q ss_pred             hhHHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCChHHHHHHHHH
Q 045674          268 TQKAMEKFRAMEARNVQPDKITYMTLIQACYLEGDFDSCLSLYHEMDEKGIEIPSHAYNLVIGGLCKVGKCIEGHAIFES  347 (650)
Q Consensus       268 ~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  347 (650)
                      ++..+..+.     ..+.+...-..++.+....|+.++|...+..+-..|.. .+                +....+|..
T Consensus        88 w~~~~~~~~-----~~p~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~~~~-~p----------------~~c~~l~~~  145 (450)
T d1qsaa1          88 WRGLLAFSP-----EKPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS-QP----------------NACDKLFSV  145 (450)
T ss_dssp             HHHHHHHCC-----SCCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC-CC----------------THHHHHHHH
T ss_pred             HHHHHHhcc-----CCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-Cc----------------hHHHHHHHH
Confidence            766444331     12335555556777888889888888887777655432 22                222334444


Q ss_pred             HHHcCCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045674          348 MIRRGCQPNVAIYTALIDSYAKLGSMNEAINIFERMKYEGVEPDEVTYGVIISGLCKNERLEEAMQYFEFCRANGVAVNA  427 (650)
Q Consensus       348 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~  427 (650)
                      +...|.. +...+-.-+......|++..|..++..+...    ........+......   ..+....   ....  .+.
T Consensus       146 ~~~~~~l-t~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~----~~~~~~a~~~l~~~p---~~~~~~~---~~~~--~~~  212 (450)
T d1qsaa1         146 WRASGKQ-DPLAYLERIRLAMKAGNTGLVTVLAGQMPAD----YQTIASAIISLANNP---NTVLTFA---RTTG--ATD  212 (450)
T ss_dssp             HHHTTCS-CHHHHHHHHHHHHHTTCHHHHHHHHHTCCGG----GHHHHHHHHHHHHCG---GGHHHHH---HHSC--CCH
T ss_pred             HHhcCCC-CHHHHHHHHHHHHHcCChhhHHHHHhhCChh----HHHHHHHHHHHHhCh---HhHHHHH---hcCC--CCh
Confidence            4443322 3333334555666778888888776644321    222333333332222   2222211   1111  122


Q ss_pred             HHHHHHHHHHHH--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH----HHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045674          428 MFYSSLIDGLGK--AGRVDEAEELFEEMVEKGCPRDSYCYNVLIDA----LAKCGKLDEALALFKRMEDEGCDQTVYTYT  501 (650)
Q Consensus       428 ~~~~~l~~~~~~--~~~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~----~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~  501 (650)
                      .....+..++.+  ..+.+.|..++....... ..+..-+......    +...+..+.+...+......+.  +.....
T Consensus       213 ~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~  289 (450)
T d1qsaa1         213 FTRQMAAVAFASVARQDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQ--STSLIE  289 (450)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCC--CHHHHH
T ss_pred             hhhHHHHHHHHHHhccChhHHHHHHHhhhhcc-cccHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccccc--chHHHH
Confidence            222222333322  357788888888877653 3333333333222    2335667778777777766543  444344


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHHcCC
Q 045674          502 ILINGMFKEHRNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPKGIIPETAFEDMITCLCKTGR  581 (650)
Q Consensus       502 ~l~~~~~~~~~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~  581 (650)
                      -.+......+++..+...+..+... ..-...-...++.++...|+.++|..+|..+... . +  .|.-|+.  .+.|.
T Consensus       290 w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~~-~-~--fYG~LAa--~~Lg~  362 (450)
T d1qsaa1         290 RRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ-R-G--FYPMVAA--QRIGE  362 (450)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS-C-S--HHHHHHH--HHTTC
T ss_pred             HHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHHHHHhcC-C-C--hHHHHHH--HHcCC
Confidence            4444556778999998888877543 2224455567888899999999999999998753 1 2  3333322  12221


Q ss_pred             HHHHHHHHHHHHHcCCCCCHH----HHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045674          582 IKEACKLADGIVDREREIPGK----IRTALINALRKAGNADLAIKLMHSKIGV  630 (650)
Q Consensus       582 ~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~g~~~~A~~~~~~~~~~  630 (650)
                      .-.   +-..-.  ...+...    .-...+..+...|....|...+..+.+.
T Consensus       363 ~~~---~~~~~~--~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~  410 (450)
T d1qsaa1         363 EYE---LKIDKA--PQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS  410 (450)
T ss_dssp             CCC---CCCCCC--CSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             CCC---CCcCCC--CccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC
Confidence            000   000000  0000100    1113456688899999999999888764

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=80.68  E-value=6.6  Score=26.81  Aligned_cols=50  Identities=18%  Similarity=0.122  Sum_probs=33.2

Q ss_pred             CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhC
Q 045674          512 RNEEALKLWDMMIDKGITPTAASFRALSIGLCLSGKVARACKILDELAPK  561 (650)
Q Consensus       512 ~~~~A~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  561 (650)
                      +.=++.+-++.+....+.|++....+.+++|.+.+++.-|.++++.+..+
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K   70 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK   70 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence            34455555556666666777777777777777777777777777776644