Citrus Sinensis ID: 045708

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------780-------790-------800-------810-------820-------830-------840-------850-------860-------870-------880-------890-------900-------910-------920-------930-------940-------950-------960-------970-------980-------990------1000------1010------1020------1030------1040------1050------1060------1070------1080------1090------1100------1110------1120------1130------1140------1150------1160------1170------1180------1190------

MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEKWVLRAESAGTILKTPLDSQASLSSEEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIVKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVKDMQSNGTSGSRSSSFSEKNTKAELNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDEPIFCRGPPFHVRVSGTA

cccccccccccEEEEEEEEcccccHHHHHHHHHHHcccccEEccccccccccccccccccccccccEEEEEEEccccccccccccccccEEEEEEEEEcccccccHHHHHHHHHHHHHHccccEEEEEEEEccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccHHHHHHHHHHHHHHcccccccEEEccccHHHHHHHHHHHHHHHHHccccccccccHHHHHHHEEEcccccccccHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccHHHHHccccccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccccccccccccEEEEEccEEEEEEEEEcccccEEEEEEEEEEEEccEEEEcccEEEEccccccEEEEEEEEcEEEEEEEcEEEEEEEccEEEEccccccHHHccccccccccccccccccccccccccccEEEEcccccEEEccccccccEEEEcccEEEEEEEEEEcccccccEEEEEEEcccccHHHHHHHHHHHcccccccccEEEEEEEEEEccccccccccccccccccccccccccccccEEEEEEEcccccccccccccccEEEEEEEEEEEEcccccEEEEEEccccccccccccccccEEEccccccccccccccccEEEEccccccccccEEEccccccccEEEEEEEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHcccEEEEEEccccEEEEEHHHHHHHHHcHHHHHHcccccEEEEEEEEccccccccccccccccccccccEEEccEEEEEEEEEEcccccEEEEEEEEEEcccccccccccccEEEEEccccccccccccccEEEEEEEEEEEEcEEEEEEEEEEEEccHHHHHccccccccccccccccccEEEEEcccc

cccccccccccEEEEEEEEcccccHHHHHHHHHHHHHccEEEccccccccccccccccccccccccEEEEEEEEccccccccccccccccEEEEEEEEcccccccHHHHHHHHHHHHHHcccHEEEEEEEEcccccHccccccccccEEEEccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccEccccccccccccccHHHHHHccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHccccccccEEEEccccHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcHHcccHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHcccHHHHHcccccHHHHHcccccHHHHHHHHHccccccccccccccccccccccHcHHcccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHcccccccccccccHEEEcccccccccccccccccccHHccccccccccEEEcccccccccccccccEEEEEccEEEEEEEEEccccEEEEEEEEEEEEccEEEEccccEEEEcccccEEEEEEEEEccccEEEEEEEEEEEccccccccccccccHHHHHccccccccccccccccccccccccEEEEEccccEEEEEccccccEEEEEEcEEEEEEEEEEEcccccEcEEEEEEEccccHHHHHHcHHHHHHHcccccccEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEEcccccccccccccccccEEEEEEEEEEcccEEEEEEEEEcccccccHHHHccccccccccccccccccccccccEEEEccccccccEEEEEEEccccccEEEEEEEEEEEcccccccccccccccccccccccccccccccEEEEEccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcEEEEEccccccccccHHHHHHHHHHHHHHHHHcccccEEEEEEcccccccccccccccccccccccccccccEEEEEEEEEcccccEEEEEEEEcccccccccccccccEEEEEccccccEEEccccccEEEEEEEEEEccccEEEEEEEEEHcHHHHHHHccccccccccEEEccccEEEEEEccc

MEPDVSMETSSMIRIAVlpigtvpptllRDYHSMLLRHhtiplsaissfytehqkspftnqpwdsgslrfkfvlggappspwedfqsNRKILAVIGichcpsspdldSVIEQFNAACKGYNSALVKRcfafspcdshleeggkkgdnlimfppadqqtQEFHLQTMMQDIAASLLMEFEKWVLRAESAgtilktpldsqaslsSEEVIKAKKRRLARAQKTIGdycllagspvdanaHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRksfipdnaqrvsplsFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRvqgrasisksslsnetgsslvdggkmhhqSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSyyplitpvgqnGLASALANsaerlpsgtrcadsalpfvrlysfplhpsqmdivkrnpgredwwagsapsgpfiytpfskgepndsskqELIWVVGEPVQVLVELAnpcgfdlrvDSIYLSvhsgnfdafpisvelppnsskvitlsgiptsvgpvtipgctvhcfgvitehifRDVDNLLLGAaqglvlsdpfrccgsaklknvsvpnisvvpplpllvsnvvggdgaiILYEGEIRDVWISLanagtvpveqahislsgknQDSIISIASETlksalplkpgaeviipvtlkawqhgpvdpetvagkiasgsigrhvkdvsspslLIHYAGLlansedqsavppgrrlvlPLQICVLQGLSFVKARLLSMeipahvsenlpravhvettsckglvgsgnrmdklmkidpfrgswglrflelelsnptdvVFEISVTVKlensgnedshsadhdateygypktridrdysarvliplehfklpildgsffvkdmqsngtsgsrsssfseknTKAELNASIRNLISRIKVRWqsgrnssgelnIKDAVQAALQSSVmdvllpdpltfGFRLVkkgseqdaeldlpndssgpkgsvlahdmtpmevLVRNNTKEMIKMSLSITCRdvagenciegtkptvlwSGVLneitmevpplqeskhcfslyflvpgEYTLVAAAVIDDANNILRArartdspdepifcrgppfhvrvsgta

MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEKWVLRAESAGTIlktpldsqaslsseEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKsfipdnaqrVSPLSFELEATLKLARFLCRRELAKDVVELLTSAadgakslidasdRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRasisksslsnetGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIVKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHvsenlpravhvettsckglvgsgnrmdklMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKLensgnedshsadhdateygypktrIDRDYSARVLIPLEHFKLPILDGSFFVKDMQSNgtsgsrsssfsekntkAELNASIRNLISRIKVRWqsgrnssgelNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSeqdaeldlpndssgpkgsvlahdmtpMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARartdspdepifcrgppfhvrvsgta

MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEKWVLRAESAGTILKTPLDSQASLSSEEVIkakkrrlaraQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPlaawsaaarllrsYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIVKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKnvsvpnisvvpplpllvsnvvGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVKDMQsngtsgsrsssfsEKNTKAELNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDEPIFCRGPPFHVRVSGTA

***********MIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHL********NLIMF*******QEFHLQTMMQDIAASLLMEFEKWVLRAESAGTILK*********************LARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQ****************************VQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALA********GTRCADSALPFVRLYSFPLHPSQMDIVKRNPGREDWWAGSAPSGPFIYTP************ELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANS*****VPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKL*****************YGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVK***************************IRNLISRIKVRWQ*********NIKDAVQAALQSSVMDVLLPDPLTFGFRLV*******************************EVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRAR*********IFCR************

***DVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAI***************PWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSP****************MFPPADQQTQEFHLQTMMQDIAASLLMEFEK**************************************QKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMG**********KFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSL*****************************WSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQ*********************PFIYTPFSK******SKQ*LIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNL***************************PNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPE****KIASGSIGRHVKDVSSPSLLIHY******************LVLPLQICVLQGLSFVKARLL*********************************DKLMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKLENS**EDSHSADHDATEYGYPKTRIDRDYSARVLIPLEHFKLP********************************LNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGS***************KGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDA*****************FCRGPPFHVRVSG**

*********SSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEKWVLRAESAGTILKTPLDSQASLSSEEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQ*****************LVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIVKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKL************HDATEYGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVKDM*****************TKAELNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDEPIFCRGPPFHVRVSGTA

****VSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYT*HQKSPFTNQPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEKWVLRAESAGTILKTPLDSQASLSSEEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIVKRNP*********APSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLG*A**************AKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSEDQSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPR********C*GLVGSGNRMDKLMKIDPFRGSWGLRFLELELSNPTDVVFEISVTVKLENS*******ADHDATEYGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVK*****************KNTKAELNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKK*******************SVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDEPIFCRGPPFHVRVSGTA

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		1196	2.2.26 [Sep-21-2011]
Q32PH0		1138	Trafficking protein parti	yes	no	0.527	0.554	0.234	2e-35
Q3U0M1		1148	Trafficking protein parti	yes	no	0.526	0.548	0.229	2e-35
Q96Q05		1148	Trafficking protein parti	yes	no	0.527	0.549	0.234	1e-34
Q6PA97		1151	Trafficking protein parti	N/A	no	0.551	0.573	0.237	1e-33
Q9VIL0		1320	Protein brunelleschi OS=D	yes	no	0.389	0.353	0.241	7e-19
O14251		1210	Transport protein particl	yes	no	0.223	0.220	0.231	1e-07

>sp\|Q32PH0\|TPPC9_BOVIN Trafficking protein particle complex subunit 9 OS=Bos taurus GN=TRAPPC9 PE=2 SV=1	Back alignment and function desciption

 Score =  152 bits (383), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 185/790 (23%), Positives = 323/790 (40%), Gaps = 159/790 (20%)

Query: 78  PP--SPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALV-KRCFAFSPC 134
           PP  S W DFQ++RK++ +I I  C S+ D   + E+F+   + Y S L   R F F   
Sbjct: 62  PPENSEWGDFQTHRKVVGLITITDCFSAKDWPQIFEKFHVQKEIYGSTLYDSRLFVFG-- 119

Query: 135 DSHLE-EGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFE-KWVLRA-ESAGT- 190
              L+ E  ++    + F P+ +      ++  ++D   SL +  E K + RA + +G  
Sbjct: 120 ---LQGEIAEQPRTDVAFYPSYEDCAT--VEKRIEDFVESLFIVLESKRLDRATDKSGDK 174

Query: 191 --ILKTPLDSQASLSSE-EVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELAR 247
             +L  P + +  +  + +    KKR   R +K +GD CL AG   D+  HY  ++EL R
Sbjct: 175 IPLLCVPFEKKDFVGLDTDSRHYKKRCQGRMRKHVGDLCLQAGMLQDSLVHYHMSVELLR 234

Query: 248 LTADYFWYAGALEGSVCALLV--------------------------------------- 268
              D+ W   ALEG   A ++                                       
Sbjct: 235 SVNDFLWLGAALEGLCSASVIYHYPGGTGGKAGARRFPGSALPAEAANRHRPGALTTNGI 294

Query: 269 -----DRMGQ-KDAVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFL 322
                  +G+ K+ +  E++  +Y   I +Y K     NA  +     ELEA +K  R L
Sbjct: 295 NADTSTEIGRAKNCLSPEDIIEKYKEAISYYSKY---KNAGVI-----ELEACVKAVRVL 346

Query: 323 CRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQLY 382
             ++ + +  E L +A       +   +++  Y  ++ L+  + + RK+AFF R      
Sbjct: 347 AIQKRSMEASEFLQNAVYINLRQLSEEEKIQRYSILSELYELIGFHRKSAFFKR------ 400

Query: 383 LQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLV----DGGKMHHQSVQ 438
                    + AMQ +A +       G  +  K  L    G SL     D  K  H+   
Sbjct: 401 ---------VAAMQCVAPSISE---PGWRACYKLLLETLPGYSLSLDPQDFNKGTHRG-- 446

Query: 439 SVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASA 498
                    W+ +QM +L E++ ++ R G+P  +    + LL++    ++   +  +  +
Sbjct: 447 ---------WAAVQMRLLHELVYASRRMGNPALSVRHLSFLLQTMLDFLSDQEKKDVTQS 497

Query: 499 LANSAERLPSGTRCAD------------SALPFVR---LYSFP--LHPSQMDIVKRNPGR 541
           L N   + P                   + LP VR   L   P  L P +M        +
Sbjct: 498 LENYTSKCPGTMELLTLPDGLTLPPVPFTKLPIVRRVKLLDLPASLRPQKM--------K 549

Query: 542 EDWWAGSAPSGPFIYTPF---SKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDS 598
                  +   PFIY+P    S+GE   S K +  WV G+  +V + + NP  F+LRV++
Sbjct: 550 SSLGPSVSAKSPFIYSPIIAHSRGE-ERSKKIDFQWVQGDVCEVQLMVYNPMPFELRVEN 608

Query: 599 IYLSVHSGNFDAFPISVELPPNSSKV-ITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRD 657
           + L      F++ P ++ LP  S    +TL G+P + G +T+ G     FGV +      
Sbjct: 609 MGLLTSGVEFESLPAALSLPAESGLYPVTLVGVPQTTGTITVSGYHTTVFGVFS------ 662

Query: 658 VDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDG-------A 710
             + LL +  G+      +  GS      ++P + +   LP    ++    G       +
Sbjct: 663 --DCLLDSLPGI------KTSGSTVEVIPALPRLQISTSLPRSAHSLQPSSGDKISTNVS 714

Query: 711 IILYEGEIRDVWISLANAGTVPVEQAHIS---LSGKNQ--DSIISIASETLKSALPLKPG 765
           + LY GE + + + L N G  P+E+  ++   L+ K +     +S   E   +  PL+PG
Sbjct: 715 VQLYNGETQQLVVRLENIGMEPLEKLEVTSKILTTKEKLYGDFLSWKLEDTLAQFPLQPG 774

Query: 766 AEVIIPVTLK 775
                 +++K
Sbjct: 775 KVATFTISIK 784

Functions as an activator of NF-kappa-B through increased phosphorylation of the IKK complex. May function in neuronal cells differentiation. May play a role in vesicular transport from endoplasmic reticulum to Golgi.
Bos taurus (taxid: 9913)

>sp\|Q3U0M1\|TPPC9_MOUSE Trafficking protein particle complex subunit 9 OS=Mus musculus GN=Trappc9 PE=1 SV=2	Back alignment and function description

>sp\|Q96Q05\|TPPC9_HUMAN Trafficking protein particle complex subunit 9 OS=Homo sapiens GN=TRAPPC9 PE=1 SV=2	Back alignment and function description

>sp\|Q6PA97\|TPPC9_XENLA Trafficking protein particle complex subunit 9 OS=Xenopus laevis GN=trappc9 PE=2 SV=1	Back alignment and function description

>sp\|Q9VIL0\|BRU_DROME Protein brunelleschi OS=Drosophila melanogaster GN=bru PE=1 SV=2	Back alignment and function description

>sp\|O14251\|TR120_SCHPO Transport protein particle subunit trs120 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=trs120 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1196
255548814		1195	conserved hypothetical protein [Ricinus	0.991	0.992	0.831	0.0
359475856		1202	PREDICTED: trafficking protein particle	0.997	0.992	0.819	0.0
225430408		1185	PREDICTED: trafficking protein particle	0.983	0.992	0.807	0.0
449455555		1196	PREDICTED: uncharacterized protein LOC10	0.994	0.994	0.797	0.0
297807133		1186	hypothetical protein ARALYDRAFT_487936 [	0.985	0.994	0.800	0.0
15238938		1186	protein TRS120 [Arabidopsis thaliana] gi	0.985	0.994	0.797	0.0
356563912		1198	PREDICTED: trafficking protein particle	0.991	0.989	0.789	0.0
414586505		1178	TPA: hypothetical protein ZEAMMB73_99382	0.979	0.994	0.661	0.0
414586504		1163	TPA: hypothetical protein ZEAMMB73_99382	0.968	0.995	0.658	0.0
242073628		1163	hypothetical protein SORBIDRAFT_06g02174	0.964	0.992	0.659	0.0

>gi\|255548814\|ref\|XP_002515463.1\| conserved hypothetical protein [Ricinus communis] gi\|223545407\|gb\|EEF46912.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score = 2046 bits (5302), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 1002/1205 (83%), Positives = 1085/1205 (90%), Gaps = 19/1205 (1%)

Query: 1    MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTN 60
            MEPDVS+ETS MIRIA++PIG VP  +LRDY+SM    H IPLSAISSFYTEHQKSPF N
Sbjct: 1    MEPDVSIETSCMIRIAIIPIGAVPAKILRDYYSMFEGQHRIPLSAISSFYTEHQKSPFAN 60

Query: 61   QPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGY 120
            QPWD+GSLRFKFVLGG+PPSPWEDFQSNRKILAVIG+CHCPSSPDLDSV++QFNA+CK Y
Sbjct: 61   QPWDTGSLRFKFVLGGSPPSPWEDFQSNRKILAVIGVCHCPSSPDLDSVLDQFNASCKYY 120

Query: 121  NSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEK 180
             SALV RCFAFSPCDS  ++GGKKG+NL +FPPAD++T E HLQTMMQDIAASLLMEFEK
Sbjct: 121  ASALVSRCFAFSPCDS--QDGGKKGENLKLFPPADRETLEIHLQTMMQDIAASLLMEFEK 178

Query: 181  WVLRAESAGTILKTPLDSQASLSSEEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYS 240
            WVL+AESAGTILKTPLDSQA+LSSEEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYS
Sbjct: 179  WVLQAESAGTILKTPLDSQATLSSEEVIKAKKRRLARAQKTIGDYCLLAGSPVDANAHYS 238

Query: 241  TALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPD 300
            TALELARLTAD+FWYAGALEGSVCALL+D+MGQKDAV E+EVK+RYNSVI HY+KSF PD
Sbjct: 239  TALELARLTADFFWYAGALEGSVCALLIDQMGQKDAVFEDEVKYRYNSVISHYKKSFTPD 298

Query: 301  NAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIAR 360
            NAQRVSPLSFELEATLKLARFLCRR + KDVVELLTSAADGA+SLIDASDRLILY+EIAR
Sbjct: 299  NAQRVSPLSFELEATLKLARFLCRRGITKDVVELLTSAADGARSLIDASDRLILYVEIAR 358

Query: 361  LFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKS---- 416
            LFG+L YQRKAAFFSRQVAQLY+QQ+NR AAI AMQVLAMTT AYRVQ RAS S      
Sbjct: 359  LFGSLGYQRKAAFFSRQVAQLYMQQDNRLAAISAMQVLAMTTSAYRVQSRASFSSHPPSD 418

Query: 417  -SLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSA 475
             S   E GSS  D GKMHH+S+   VSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSA
Sbjct: 419  ISAQKEIGSSHADSGKMHHESI---VSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSA 475

Query: 476  AARLLRSYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIV 535
            AARLLRSYYPLITP GQNGLASAL NSAERLPSGTRCAD ALPFVRLYSFPLH S MDIV
Sbjct: 476  AARLLRSYYPLITPAGQNGLASALTNSAERLPSGTRCADPALPFVRLYSFPLHSSHMDIV 535

Query: 536  KRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLR 595
            KRNP REDWWAGSAP+GPFIYTPFSKGEPNDSSKQELIW+VGEPVQVLVELANPCGFDLR
Sbjct: 536  KRNPAREDWWAGSAPTGPFIYTPFSKGEPNDSSKQELIWIVGEPVQVLVELANPCGFDLR 595

Query: 596  VDSIYLSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIF 655
            VDSIYLSVHS NFDAFP+SVELPPNSSKVI LSGIPTS GPVTIPGCTVHCFGVITEH+F
Sbjct: 596  VDSIYLSVHSENFDAFPVSVELPPNSSKVIILSGIPTSEGPVTIPGCTVHCFGVITEHLF 655

Query: 656  RDVDNLLLGAAQGLVLSDPFRCCGSAKLKNVSVPNISVVPPLPLLVSNVVGGDGAIILYE 715
            RDVDNLLLGAAQGLVLSDPFRCCGS KL+NVSVPNISVVPPLPLLVS+VVGG GAI+LYE
Sbjct: 656  RDVDNLLLGAAQGLVLSDPFRCCGSPKLRNVSVPNISVVPPLPLLVSHVVGGGGAIVLYE 715

Query: 716  GEIRDVWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLK 775
            GEIRDVWISLANAGTVPVEQAHISLSGKNQDS++SI  ETLKSALPLKPGAEVI+PVTLK
Sbjct: 716  GEIRDVWISLANAGTVPVEQAHISLSGKNQDSVVSIPYETLKSALPLKPGAEVILPVTLK 775

Query: 776  AWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSED----QSAVPPGRRL 831
            AWQ G VD +    K ASGS+GR +KD SSP+LLIHYAG L +S D     SAVPPGRR+
Sbjct: 776  AWQLGLVDLDITGNKHASGSLGRQLKDGSSPTLLIHYAGPLTDSGDPHTKGSAVPPGRRM 835

Query: 832  VLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKID 891
            V+PL ICVL+GLSFVKARLLSMEIPAHV EN P  VHVE +  K  + S  +MD L+KID
Sbjct: 836  VIPLHICVLRGLSFVKARLLSMEIPAHVGENPPEPVHVECSPSKEAI-SPKKMDGLVKID 894

Query: 892  PFRGSWGLRFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDY 951
            PFRGSWGLRFLELELSNPTDVVFEISV+V+L++  +ED+ SAD + TEY YPKTRIDRDY
Sbjct: 895  PFRGSWGLRFLELELSNPTDVVFEISVSVQLDS--HEDNLSADQEGTEYSYPKTRIDRDY 952

Query: 952  SARVLIPLEHFKLPILDGSFFVKDMQSNGTSGSRSSSFSEKNTKAELNASIRNLISRIKV 1011
            SARVLIPLEHFKLPILDGSFF+KD Q +G  G R+SSFSEKN KAELNASI+NLISRIKV
Sbjct: 953  SARVLIPLEHFKLPILDGSFFMKDFQPDGGIGGRNSSFSEKNAKAELNASIKNLISRIKV 1012

Query: 1012 RWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSG 1071
            RWQSGRNSSGELNIKDA+QAALQ+SVMDVLLPDPLTFGFRLVK    +++E  +P DSSG
Sbjct: 1013 RWQSGRNSSGELNIKDAIQAALQTSVMDVLLPDPLTFGFRLVKSNVPRESE--MPVDSSG 1070

Query: 1072 PKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITM 1131
             KGSV+AHDMTPMEV+VRNNTKEMI+MSLSITCRDVAG NC+EG+K TVLW+GVLN I M
Sbjct: 1071 SKGSVMAHDMTPMEVVVRNNTKEMIRMSLSITCRDVAGHNCVEGSKATVLWAGVLNGIIM 1130

Query: 1132 EVPPLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDEPIFCRGPPFHVR 1191
            EVP LQESKHCFSL+FLVPGEYTLVAAAVI DAN++LR RARTDS DEPIFCRGPPFH+R
Sbjct: 1131 EVPALQESKHCFSLHFLVPGEYTLVAAAVIADANDVLRTRARTDSADEPIFCRGPPFHIR 1190

Query: 1192 VSGTA 1196
            + GTA
Sbjct: 1191 IIGTA 1195

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|359475856\|ref\|XP_003631763.1\| PREDICTED: trafficking protein particle complex subunit 9-like isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|225430408\|ref\|XP_002285396.1\| PREDICTED: trafficking protein particle complex subunit 9-like isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|449455555\|ref\|XP_004145518.1\| PREDICTED: uncharacterized protein LOC101217047 [Cucumis sativus] gi\|449485175\|ref\|XP_004157090.1\| PREDICTED: uncharacterized LOC101217047 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|297807133\|ref\|XP_002871450.1\| hypothetical protein ARALYDRAFT_487936 [Arabidopsis lyrata subsp. lyrata] gi\|297317287\|gb\|EFH47709.1\| hypothetical protein ARALYDRAFT_487936 [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|15238938\|ref\|NP_196665.1\| protein TRS120 [Arabidopsis thaliana] gi\|9795156\|emb\|CAC03452.1\| putative protein [Arabidopsis thaliana] gi\|332004245\|gb\|AED91628.1\| protein TRS120 [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|356563912\|ref\|XP_003550201.1\| PREDICTED: trafficking protein particle complex subunit 9-like [Glycine max]	Back alignment and taxonomy information

>gi\|414586505\|tpg\|DAA37076.1\| TPA: hypothetical protein ZEAMMB73_993824 [Zea mays]	Back alignment and taxonomy information

>gi\|414586504\|tpg\|DAA37075.1\| TPA: hypothetical protein ZEAMMB73_993824 [Zea mays]	Back alignment and taxonomy information

>gi\|242073628\|ref\|XP_002446750.1\| hypothetical protein SORBIDRAFT_06g021740 [Sorghum bicolor] gi\|241937933\|gb\|EES11078.1\| hypothetical protein SORBIDRAFT_06g021740 [Sorghum bicolor]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		1196
TAIR\|locus:2184901		1186	TRS120 "AT5G11040" [Arabidopsi	0.985	0.994	0.761	0.0
DICTYBASE\|DDB_G0274803		1464	DDB_G0274803 [Dictyostelium di	0.162	0.132	0.341	1.6e-47
UNIPROTKB\|Q32PH0		1138	TRAPPC9 "Trafficking protein p	0.360	0.378	0.225	6.2e-27
UNIPROTKB\|Q96Q05		1148	TRAPPC9 "Trafficking protein p	0.360	0.375	0.223	2.8e-26
MGI\|MGI:1923760		1148	Trappc9 "trafficking protein p	0.361	0.376	0.226	1.4e-25
FB\|FBgn0261787		1320	bru "brunelleschi" [Drosophila	0.275	0.249	0.24	2.1e-16
POMBASE\|SPAC6G10.05c		1210	trs120 "TRAPP complex subunit	0.091	0.090	0.298	6e-15
ASPGD\|ASPL0000003889		1474	hypA [Emericella nidulans (tax	0.074	0.060	0.347	3e-10
UNIPROTKB\|G4NGQ6		1438	MGG_17698 "Uncharacterized pro	0.078	0.065	0.281	2.7e-05
SGD\|S000002815		1289	TRS120 "Subunit of the transpo	0.075	0.069	0.298	0.0002

TAIR\|locus:2184901 TRS120 "AT5G11040" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 4657 (1644.4 bits), Expect = 0., P = 0.
 Identities = 915/1202 (76%), Positives = 1018/1202 (84%)

Query:     1 MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTN 60
             MEPDVS+ET S+IRIAVLPIGT+PPTLLRDYHSMLLRHHTI LSAISSFYTEHQKSPFTN
Sbjct:     1 MEPDVSIETLSIIRIAVLPIGTIPPTLLRDYHSMLLRHHTIALSAISSFYTEHQKSPFTN 60

Query:    61 QPWDSGSLRFKFVLGGAPPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGY 120
             QPWDSGSLRFKFVLGG+PPSPWEDFQSNRK+LAVIG+CHCPSSPDLDSV E+FN ACK Y
Sbjct:    61 QPWDSGSLRFKFVLGGSPPSPWEDFQSNRKMLAVIGLCHCPSSPDLDSVTEKFNVACKSY 120

Query:   121 NSALVKRCFAFSPCDSHLEEGGKKGDNLIMFPPADQQTQEFHLQTMMQDIAASLLMEFEK 180
             +SALV+RCFAFSP DS LE+G KKG+NLI+FPP+D+QTQEFHLQTMMQDIAASLLMEFEK
Sbjct:   121 SSALVRRCFAFSPGDSQLEDGDKKGENLILFPPSDKQTQEFHLQTMMQDIAASLLMEFEK 180

Query:   181 WVLRAESAGTILKTPLDSQASLSSEEVIXXXXXXXXXXQKTIGDYCLLAGSPVDANAHYS 240
             WVL+AESAGTILKTPLDSQASL+SEEVI          QKTIGDY LLAGSPVDANAHYS
Sbjct:   181 WVLQAESAGTILKTPLDSQASLNSEEVIKAKKRRLGRAQKTIGDYSLLAGSPVDANAHYS 240

Query:   241 TALELARLTADYFWYAGALEGSVCALLVDRMGQKDAVLEEEVKFRYNSVILHYRKSFIPD 300
             TALELARLT DYFWYAGALEGSVCALLVDRMGQ+D  LE+EV++RY +VILHYRKSFI +
Sbjct:   241 TALELARLTGDYFWYAGALEGSVCALLVDRMGQRDVALEDEVRYRYTNVILHYRKSFIQE 300

Query:   301 NAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIAR 360
              AQRVSPLSFELEATLKLARFLCRRELAK+VVELLT+AADGAKSLIDASDRLILY+E+AR
Sbjct:   301 IAQRVSPLSFELEATLKLARFLCRRELAKEVVELLTNAADGAKSLIDASDRLILYVEVAR 360

Query:   361 LFGTLDYQRKAAFFSRQVAQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSN 420
             LFG L YQRKAAFF RQVAQLYLQQ+NR AAI AMQVL+MTT AYR+Q RAS+SK S++N
Sbjct:   361 LFGALGYQRKAAFFCRQVAQLYLQQDNRLAAISAMQVLSMTTDAYRIQSRASMSKVSVNN 420

Query:   421 ETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPXXXXXXXXXXX 480
             ETG  L D GKMHH S+   VSLFES WSTLQMVVLREILLSAVRAGDP           
Sbjct:   421 ETGR-LPDAGKMHHHSI---VSLFESHWSTLQMVVLREILLSAVRAGDPLAAWSAAARLL 476

Query:   481 XXYYPLITPVGQNGLASALANSAERLPSGTRCADSALPFVRLYSFPLHPSQMDIVKRNPG 540
               +YPLITP GQNGLA++LANSA+RLPSGTRCAD ALPFVRL+SFPLH SQ+DIVKRNP 
Sbjct:   477 RWHYPLITPSGQNGLANSLANSADRLPSGTRCADPALPFVRLFSFPLHSSQVDIVKRNPA 536

Query:   541 REDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIY 600
             REDWW GSAPSGPFIYTPFSKG+ N+SSKQELIWVVGEPVQVLVELANPC FDLR+DSIY
Sbjct:   537 REDWWTGSAPSGPFIYTPFSKGDANESSKQELIWVVGEPVQVLVELANPCCFDLRIDSIY 596

Query:   601 LSVHSGNFDAFPISVELPPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDN 660
             LS HS NFDAFP+SV++PPNS+KVITLSGIPT+VGPVTIPGCTVHCFGVITEH+FRDVDN
Sbjct:   597 LSAHSSNFDAFPVSVDIPPNSAKVITLSGIPTAVGPVTIPGCTVHCFGVITEHVFRDVDN 656

Query:   661 LLLGAAQGLVLSDPFRCCGSAKLKXXXXXXXXXXXXXXXXXXXXXGGDGAIILYEGEIRD 720
             LLLGAAQGLV SDPFR CGSAKL+                     GGDGAIILYEGEIR+
Sbjct:   657 LLLGAAQGLVFSDPFRSCGSAKLRHVFVPNISVAPPLPLLVANVVGGDGAIILYEGEIRE 716

Query:   721 VWISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSALPLKPGAEVIIPVTLKAWQHG 780
             V I+ ANAGTVP+ QAH+SLSGKNQD++ISIA E L+SALPLKPGA+V +PVTLKAW  G
Sbjct:   717 VCINFANAGTVPIVQAHVSLSGKNQDAVISIADEALQSALPLKPGAQVTLPVTLKAWHVG 776

Query:   781 PVDPETV--AGKIASGSIGRHVKDVSSPSLLIHYAGLLANSED----QSAVPPGRRLVLP 834
             P D +    +G+ A+G+ GR  KD +SPSLLIHYAG L+N+ D    +S VPPGRRLV+P
Sbjct:   777 PTDSDNTMSSGRNAAGNTGRP-KDGTSPSLLIHYAGPLSNNGDSQEKESIVPPGRRLVVP 835

Query:   835 LQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKIDPFR 894
             LQICVLQGLSFVKARLLSMEIPAHVS+NL R   +E  S           D L+KI+PFR
Sbjct:   836 LQICVLQGLSFVKARLLSMEIPAHVSDNL-RDEDIERES---------NADSLVKINPFR 885

Query:   895 GSWGLRFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYSAR 954
             GSWGLRFLELELSNPTDVVFEISV V+LENS  ED  S   D+ EY YPKTRIDRDYSAR
Sbjct:   886 GSWGLRFLELELSNPTDVVFEISVFVQLENSAKEDDSSPVQDSPEYEYPKTRIDRDYSAR 945

Query:   955 VLIPLEHFKLPILDGSFFVKDMQXXXXXXXXXXXXXEKNTKAELNASIRNLISRIKVRWQ 1014
             VLIPLEHFKLP+LDGSFF KD               EKNTKAE+N  I+NLIS+IKVRWQ
Sbjct:   946 VLIPLEHFKLPVLDGSFFTKDPPPGSPSSSRNPSFSEKNTKAEINTLIKNLISKIKVRWQ 1005

Query:  1015 SGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDSSGPKG 1074
             SGRNSSGEL+IKDA+Q ALQ++VMDVLLPDPLTFGFRLV+ G E+D E    +  S  KG
Sbjct:  1006 SGRNSSGELDIKDAIQTALQTTVMDVLLPDPLTFGFRLVRNGLEKDPETKAESPFS--KG 1063

Query:  1075 SVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIEGTKPTVLWSGVLNEITMEVP 1134
             SVL+H++TPMEVLVRNNT E IK++LS+TCRDVAG+NC EG   TVLW+G L+ I+MEV 
Sbjct:  1064 SVLSHEVTPMEVLVRNNTSEAIKLNLSVTCRDVAGQNCTEGADATVLWAGALSGISMEVA 1123

Query:  1135 PLQESKHCFSLYFLVPGEYTLVAAAVIDDANNILRARARTDSPDEPIFCRGPPFHVRVSG 1194
             PLQE++HCFSL+FLVPGEYT+VAAAVI+DANN+LRARA T SP+EPIFCRGPPFHV V+G
Sbjct:  1124 PLQEARHCFSLFFLVPGEYTMVAAAVIEDANNVLRARAGTASPNEPIFCRGPPFHVCVAG 1183

Query:  1195 TA 1196
              A
Sbjct:  1184 GA 1185

GO:0003674 "molecular_function" evidence=ND

GO:0005794 "Golgi apparatus" evidence=ISM

GO:0000910 "cytokinesis" evidence=IMP

GO:0000919 "cell plate assembly" evidence=IMP

DICTYBASE\|DDB_G0274803 DDB_G0274803 [Dictyostelium discoideum (taxid:44689)]	Back alignment and assigned GO terms

UNIPROTKB\|Q32PH0 TRAPPC9 "Trafficking protein particle complex subunit 9" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|Q96Q05 TRAPPC9 "Trafficking protein particle complex subunit 9" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

MGI\|MGI:1923760 Trappc9 "trafficking protein particle complex 9" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

FB\|FBgn0261787 bru "brunelleschi" [Drosophila melanogaster (taxid:7227)]	Back alignment and assigned GO terms

POMBASE\|SPAC6G10.05c trs120 "TRAPP complex subunit Trs120 (predicted)" [Schizosaccharomyces pombe (taxid:4896)]	Back alignment and assigned GO terms

ASPGD\|ASPL0000003889 hypA [Emericella nidulans (taxid:162425)]	Back alignment and assigned GO terms

UNIPROTKB\|G4NGQ6 MGG_17698 "Uncharacterized protein" [Magnaporthe oryzae 70-15 (taxid:242507)]	Back alignment and assigned GO terms

SGD\|S000002815 TRS120 "Subunit of the transport protein particle (TRAPP) complex" [Saccharomyces cerevisiae (taxid:4932)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		1196
pfam08626		1183	pfam08626, TRAPPC9-Trs120, Transport protein Trs12	0.0

>gnl\|CDD\|219942 pfam08626, TRAPPC9-Trs120, Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit	Back alignment and domain information

 Score =  799 bits (2064), Expect = 0.0
 Identities = 361/1280 (28%), Positives = 549/1280 (42%), Gaps = 230/1280 (17%)

Query: 1    ME-PDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFT 59
            ME PD S ET S +R+ V+PIG V P   R Y  +L R   I LS +S +  E QKSPF 
Sbjct: 1    MESPDYSFETPSKVRVLVVPIGKVTPKNFRRYLQLLRRVSEIRLSDVSRYTPERQKSPFN 60

Query: 60   NQPWDSGSLRFKFVLGG-APPSPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACK 118
             Q + +G L  KF+  G A PS  EDFQ  RK+  VIGI   PS PD++   ++     +
Sbjct: 61   PQAFPNGRLFLKFLTSGDAEPSFLEDFQPFRKVFVVIGIVDYPSDPDVE---QKLVVLKE 117

Query: 119  GYNSALVKRCFAFSPCDSHLEEGGKKGDNLIMFP-PADQQTQEFHLQTMMQDIAASLLME 177
             Y +A+V   F F      + E         +FP P+D Q+    ++T++ DI A+LL  
Sbjct: 118  RYPTAIVHNLFVFDTPTDEIVE--NIRTAPNVFPHPSDCQSLLKAMETILCDITANLLEA 175

Query: 178  FEKW---VLRAESAGTI------------------------LKTPLDSQASLSSEEVIKA 210
             E +    +   S G+I                        L TPLDS  SL S+   K+
Sbjct: 176  LESYSYKNITLRSPGSITDSAVLTKTLNNANKRLSSFKVTLLNTPLDSSLSLGSDLSSKS 235

Query: 211  KKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSVCALLVDR 270
            KKR L R +K +GD+CLLAG  VDA  H+ TA+EL R   D+ W   ALEG   AL++  
Sbjct: 236  KKRHLGRQRKIMGDFCLLAGRYVDALQHFITAIELLRKVGDFLWLGSALEGISVALVLLH 295

Query: 271  MGQKD--------------------------------------------------AVLEE 280
                D                                                   +L E
Sbjct: 296  YLGSDYQIPQILSMILSVEGTTDASGPRRFSGTLVSSPRNSVSLSPGSANIDVENILLPE 355

Query: 281  EVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRREL------------- 327
             +K  Y+ VI +Y KS + +N     P    LEA LK ARFL                  
Sbjct: 356  LIKIIYSEVIQYYDKSTLQNNNM--VPGVVYLEAILKTARFLIGIYSSDNLDSIVKPVLK 413

Query: 328  -------AKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQVAQ 380
                     +V E +  A +     +   ++  +Y  +A ++G L  +RKAAFF R +A 
Sbjct: 414  DTPNSPSKSEVSEFIMKAFELQLRDMSIEEQCRIYSALAEMYGLLGLKRKAAFFLRLLAV 473

Query: 381  LYLQQ--------ENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKM 432
              L          +     + A+  +++ T+++ V  R    K+S  N            
Sbjct: 474  SILPHLSHGEQSIKELLEEVFALYGISLETESFSVDSR----KTSQGN------------ 517

Query: 433  HHQSVQSVVSLFESQWSTLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQ 492
                           WS+LQM +LR  L ++ R GDP  +    + LL +Y  L++   Q
Sbjct: 518  ---------------WSSLQMDLLRLCLSASRRLGDPELSLKLCSLLLTTYTHLLSSSEQ 562

Query: 493  NGLASALANSAERLPSGTRCADSALPF--------VRLYSFPLHPSQMDIVKRNPGREDW 544
              LA +L NS  +  SGTR    ++P+        V+L S    P + +IV R+  +++W
Sbjct: 563  KKLAQSLENSLSK--SGTRNIKLSIPYWDPFLVRKVKLNS--DIPLEEEIVLRHQNKKEW 618

Query: 545  WAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVH 604
            W  S   GPF Y PF+K   + + K + +WVVG+ V+V V L NP  F++ V+ I+L   
Sbjct: 619  WTNSINKGPF-YNPFTKKGSSSTKKIDKVWVVGDVVEVSVTLQNPFSFEVEVEDIHLVTE 677

Query: 605  SGNFDAFPISVEL-PPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLL 663
               F + P S+ L  P S + +TLSG+P SVG +TI G  V  FGV T+ +F     L  
Sbjct: 678  GVEFRSIPASLFLKAPTSMEPVTLSGLPLSVGELTINGFDVKVFGVETQFLFIIDPELKH 737

Query: 664  GAAQGLVLSDPFRCCGSAKLKNV-----SVPNISVVPPLPLLVSNVVG-GDGAIILYEGE 717
             A + L+ S       S   K V         + V+PP P L   V+   +G+I+L EGE
Sbjct: 738  VALKVLLES---VNAESRLDKTVQNLESESLTVEVIPPQPRLSLLVISMTNGSIMLLEGE 794

Query: 718  IRDVWISLANAGTVPVEQAHISLSGKNQDSIISI-ASETLKSALPLKPGAEVIIPVTLKA 776
             R   I+L NA +VP+    ++    N + +     S+ L +    +    ++     + 
Sbjct: 795  KRQFTITLENASSVPINYLSVTFWDSNIEHLNKALHSKLLTADDLYELEFLLLWLKPFRI 854

Query: 777  WQHGPVDPETVAGKIASGSIGRHVK-DVSSPSLLIHYAGLL---ANSEDQSAVPPGRRLV 832
                P+ P           +   ++ D + P L +  +G++    +SE   +    RRL 
Sbjct: 855  LNKPPIQP--------GEVVTFDIELDGARPPLHMKESGIILEYGHSEPDHSEFYMRRLS 906

Query: 833  LPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKIDP 892
            +PL + V+  +  V+  +L +     VSEN    +                         
Sbjct: 907  IPLNVSVMPSIELVRCDILPL-NSDSVSENSDSVIS----------------YITSIKAD 949

Query: 893  FRGSWGLRFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYS 952
             +GSW    L L+  N  D   E +V+                  + +   +  I+   +
Sbjct: 950  SKGSWDYCLLLLDFRNSWDEGLECNVSY-----------------STFESNEVLIEAGKT 992

Query: 953  ARVLIPLEHFKLPILDGSFFVKDMQSNGTSGSRSSSFS--EKNTKAELNASIRNLISRIK 1010
             R+LIPL+ FKL  +D +F      S      +S   S  E+    EL      ++S++ 
Sbjct: 993  QRILIPLKRFKLKKVDFNFKPIPSLSREKQFIQSYKKSEEEEIEMRELFWLRNEILSKLS 1052

Query: 1011 VRWQSGRNS-SGELNIKDAVQAALQSSVMDVLLPDPLTFGFRLVKKGSEQDAELDLPNDS 1069
            V W++GRNS SGE++++DA++  L + ++++L PDPL F   ++K               
Sbjct: 1053 VSWKTGRNSRSGEIDLRDAIR--LSTKMLNILSPDPLQFSVTVLK--DSCKQTSGEQY-- 1106

Query: 1070 SGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENCIE--GTKPTVLWSGVLN 1127
                         P+EV +RNNTK  +   L     DV  +N      +  TVLW+G L 
Sbjct: 1107 ---NLKCQVDPFYPLEVTIRNNTKATVNGILLTNTPDVDHQNSKANPSSDRTVLWNGSLT 1163

Query: 1128 EITMEVPPLQESKHCFSLYF 1147
            +I  EV P  ES    SL F
Sbjct: 1164 DIVCEVQPGGESVLELSLVF 1183

This region is found at the N terminal of Saccharomyces cerevisiae Trs120 protein. Trs120 is a subunit of the multiprotein complex TRAPP (transport particle protein) which functions in ER to Golgi traffic. Trs120 is specific to the larger TRAPP complex, TRAPP II, along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way. It is likely that there is a complex function for TRAPP II in multiple pathways. Length = 1183

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		1196
PF08626		1185	TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC	100.0
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	100.0
KOG1938		960	consensus Protein with predicted involvement in me	99.69
PF12739		414	TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex	99.23
PF07919		554	Gryzun: Gryzun, putative trafficking through Golgi	98.92
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	95.24
KOG1953		1235	consensus Targeting complex (TRAPP) subunit [Intra	95.05
COG1470		513	Predicted membrane protein [Function unknown]	94.76
PF00927		107	Transglut_C: Transglutaminase family, C-terminal i	93.06
PF13424		78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	92.52
PF14874		102	PapD-like: Flagellar-associated PapD-like	91.22
PF10633		78	NPCBM_assoc: NPCBM-associated, NEW3 domain of alph	90.74
PF14938		282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	88.68
PF12690		82	BsuPI: Intracellular proteinase inhibitor; InterPr	88.57
PF06159		249	DUF974: Protein of unknown function (DUF974); Inte	87.38
PF07705		101	CARDB: CARDB; InterPro: IPR011635 The APHP (acidic	86.77
PF03896		285	TRAP_alpha: Translocon-associated protein (TRAP),	86.28
smart00769		100	WHy Water Stress and Hypersensitive response.	84.8
PF13176		36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	83.21
KOG1130		639	consensus Predicted G-alpha GTPase interaction pro	83.09
PF12862		94	Apc5: Anaphase-promoting complex subunit 5	80.59

>PF08626 TRAPPC9-Trs120: Transport protein Trs120 or TRAPPC9, TRAPP II complex subunit; InterPro: IPR013935 The trafficking protein particle complex TRAPP is a multi-protein complex needed in the early stages of the secretory pathway	Back alignment and domain information

Probab=100.00  E-value=7.5e-169  Score=1641.81  Aligned_cols=1034  Identities=30%  Similarity=0.488  Sum_probs=819.6

Q ss_pred             CCCCCCccccceeEEEEEeCCCCChhHHHHHHHHHhccCeeecCCCCCcccccCCCCCCCCCCCCCceEEEEeecC-CCC
Q 045708            1 MEPDVSMETSSMIRIAVLPIGTVPPTLLRDYHSMLLRHHTIPLSAISSFYTEHQKSPFTNQPWDSGSLRFKFVLGG-APP   79 (1196)
Q Consensus         1 me~~~s~~~parvrvLvvPiG~i~~~~F~~~~~~L~~~~~VrL~DIt~~~~~~~~~~F~p~~fp~G~i~~~f~t~~-~~~   79 (1196)
                      ||++.||++||||||||||||+|++++|.+|+++||++++|||+||+|++..+++++|+|++||+|+|+|+|+++. +.+
T Consensus         1 m~~~~s~~~pa~vrvlv~PiG~i~~~~F~~~~~~l~~~~~v~L~di~~~~~~~~~~~F~p~~~p~G~i~~~f~~~~~~~~   80 (1185)
T PF08626_consen    1 MEDDYSFIAPARVRVLVVPIGPIKRSRFNRYVERLQRHNEVRLGDISPDTPRPERSPFSPQAFPDGRILYDFVTSVPPEH   80 (1185)
T ss_pred             CCCCccccCccEEEEEEEcCCCCCHHHHHHHHHHHhhcCeEeccccccccCccccCCCCCCCCCCceEEEEEecCCCCCc
Confidence            9999999999999999999999999999999999999999999999998765679999999999999999999998 457


Q ss_pred             CCCccccccceEEEEEEEecCCCCCCHHHHHHHHHHHHHhCCCceEEEEEEec-CCCCccccCCCCCCcEEEeC-CCCcc
Q 045708           80 SPWEDFQSNRKILAVIGICHCPSSPDLDSVIEQFNAACKGYNSALVKRCFAFS-PCDSHLEEGGKKGDNLIMFP-PADQQ  157 (1196)
Q Consensus        80 s~l~dFq~~RkvlgVIgI~d~~~~~dl~~~~~~~~~lk~~YP~alv~rclvFd-~~~~~~~~~~~~~~~lv~~P-~~~~~  157 (1196)
                      ++|+|||+|||+||||||+||++.++++.   +|+++|++||++++||||+|| +.++..   ....++.++|| +.++.
T Consensus        81 ~~l~dFe~~R~~l~vIgi~~~~~~~~~~~---~~~~l~~~yp~~l~~~~~~F~~~~~~~~---~~~~~~~~~~~~~~~~~  154 (1185)
T PF08626_consen   81 LFLEDFEPFRRVLGVIGIADCSSDPDLNE---EFEQLKERYPSALVHRCFVFDSPEDEQN---DNSDEDLVVFPSPSDSQ  154 (1185)
T ss_pred             cccccccccCceEEEEEEEcCCCCcchhh---HHHHHHhhcchhhhhheeEeeccccccc---cCCCCceEEEecCcccc
Confidence            79999999999999999999999888766   899999999999999999999 433321   33445567777 44557


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHH---HHhhhccCcc------------------------ccCCCCCCCCCCcH-HHH-
Q 045708          158 TQEFHLQTMMQDIAASLLMEFEKW---VLRAESAGTI------------------------LKTPLDSQASLSSE-EVI-  208 (1196)
Q Consensus       158 ~~~~~l~TvmcDi~~~lL~~le~~---~~s~~s~~si------------------------l~tpl~s~~~lssd-e~~-  208 (1196)
                      ++.++|+|+||||+++||++|+++   ...+++++++                        +.+|.+++.+++++ +.+ 
T Consensus       155 ~~~~~l~t~mcDi~~~lL~~l~~~s~~~~tl~s~~~i~~~~~~~~~~~~~~~~lss~~~~~~~~~~~~~~~~~~~~~~~~  234 (1185)
T PF08626_consen  155 SLETTLETVMCDISSSLLAELESLSYKAVTLRSPGSIGGSAVLKPTLNNASKRLSSFKPSLLSAPSESSDSVGSSLSSSD  234 (1185)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHhhhhhhheeccCCccccCcccccccccccccccccCCCcccCCCcccccccCccccccc
Confidence            789999999999999999999999   3345666543                        34455555544442 122 


Q ss_pred             hhhhhccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCc------------
Q 045708          209 KAKKRRLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKD------------  275 (1196)
Q Consensus       209 r~kkR~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~------------  275 (1196)
                      |+|||++||+.|++||||||||+|.|||++|+||++.+|+.+||||||+||||++ |++++.+.+ .+            
T Consensus       235 ~~~~r~~gR~~k~~gd~~LlaG~~~dAl~~y~~a~~~~k~~~D~lW~a~alEg~~~~~~l~~~~~-~~~qip~i~~~~~~  313 (1185)
T PF08626_consen  235 RSRKRCKGRLQKVLGDLYLLAGRWPDALKEYTEAIEILKSSNDYLWLASALEGIAVCLLLLSWLG-MDFQIPQICSPLCP  313 (1185)
T ss_pred             ccchhhhhhhhhhhhhHHHHcCCHHHHHHHHHHHHHHHhhcCcHhhhHHHHHHHHHHHHHHhccC-CCccccchhcccCC
Confidence            8999999999999999999999999999999999999999999999999999997 555553322 11            


Q ss_pred             -------------------------------------hhhHHHHHHHHHHHHHHHhhcCCCCCCCCCCCchhhHHHHHHH
Q 045708          276 -------------------------------------AVLEEEVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKL  318 (1196)
Q Consensus       276 -------------------------------------~~~~~ei~~~~~~ai~lY~ks~~p~n~e~~p~l~~~~Ea~Lr~  318 (1196)
                                                           ..++++|++++++|+.+|+|+.+ .+.+.+|++ +|+||+||+
T Consensus       314 ~~~~~~~~s~~~~~~~~~~sP~~s~~~~~~~~~~~~~~~l~~~i~~~~~~~l~~Y~~~~~-~~~~~~p~l-v~~E~~lr~  391 (1185)
T PF08626_consen  314 ISSSTSSSSPRNSSSSSTQSPRNSVSSSSSSNIDVNLVNLPNLIPDLYEKALSLYSRSTN-DTSEYVPQL-VYSEACLRF  391 (1185)
T ss_pred             CCCccCccCcccCCccCCCCCCccccCCCccccchhhccCHhhhhHHHHHHHHHHHHhhc-cccccCcch-HHHHHHHHH
Confidence                                                 12467889999999999999975 355567776 678999999


Q ss_pred             HHHHhhcc--------------------chHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHHHHHH
Q 045708          319 ARFLCRRE--------------------LAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFFSRQV  378 (1196)
Q Consensus       319 a~~L~~~~--------------------~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~lR~l  378 (1196)
                      |+||++.+                    .+.||+++++++++.++.+|++.|||+||++||+||++|||+||+|||+|++
T Consensus       392 ~~~l~~~~~~~~l~~iV~~~~~~~~~~~~~~eI~~~l~~~~~~~l~~l~~~dqi~i~~~lA~vy~~lG~~RK~AFvlR~l  471 (1185)
T PF08626_consen  392 ARFLVAQHLSDNLDHIVKRPLTPTPNISSRSEIAEFLFKAFPLQLKDLSVEDQIRIYSGLASVYGSLGFHRKKAFVLREL  471 (1185)
T ss_pred             HHHHHHhhcccchhhhhccccccccCCCCHHHHHHHHHHhhhhhhhhCCHHHHHHHHHHHHHHHHhcchhHHHHHHHHHH
Confidence            99999988                    8899999999999998888999999999999999999999999999999999


Q ss_pred             HHHHHhhcccchhhhHHHHHHHHHhhcCccccccccccccccccCCCccCCCCccccchhhhhhcccccchHHHHHHHHH
Q 045708          379 AQLYLQQENRSAAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWSTLQMVVLRE  458 (1196)
Q Consensus       379 ~~~lv~~~~~~~~~s~~~lL~~~~~~Ygi~~~~~~~~~~~~~~~g~~~~d~~~~~~~s~~~v~~~fg~gW~~LQi~vL~e  458 (1196)
                      ++.+++...++. .+...+|..+++.||+...........            ..+.+          .+|++||+++|++
T Consensus       472 ~~~~~~~l~~~~-~s~~~lL~~~~~~Ygi~~~~~~~~~~~------------~~~~~----------~~W~~LQi~vL~~  528 (1185)
T PF08626_consen  472 AVQLVPGLIHWH-QSYRSLLEELCKGYGISLDPESSSEDS------------SKGSQ----------SNWPSLQIDVLKE  528 (1185)
T ss_pred             HHHhccccCCcc-hHHHHHHHHHhccCcccCCcccccccc------------ccccc----------cCCHHHHHHHHHH
Confidence            999987663333 345568899999999977543222110            00000          2399999999999


Q ss_pred             HHHHHHHcCChHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHHHHhhC--CCCCcccCCCCCcc-ccccCCC-CCCcccc
Q 045708          459 ILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNGLASALANSAERL--PSGTRCADSALPFV-RLYSFPL-HPSQMDI  534 (1196)
Q Consensus       459 ~i~~a~~~~d~~~~~~~~~~LL~~~~~~Ls~~eQ~~L~~~l~~~s~~l--~~~~~~~~p~lPfv-rl~~~p~-~p~~~~i  534 (1196)
                      ||.+|++++|+..+++|+++|||+|+|+|+++||++|++++.+.+.+.  +......+||+||+ |-..++. .|....+
T Consensus       529 ~I~~ae~l~D~~~~~~~~~~LL~~~~~~Ls~~EQ~~L~~~l~~~~~~~~~~~~~l~~~Ywdpflvr~v~l~~~iP~~~~i  608 (1185)
T PF08626_consen  529 CINIAEALGDFAGVLRFSSLLLRTYSPLLSPDEQIRLANNLQRTSAAANLGNSDLSAEYWDPFLVRDVKLESSIPLKPDI  608 (1185)
T ss_pred             HHHHHHhcCCHHHHHHHHHHHHHHHhhhCCHHHHHHHHHHHHHHhhhhccCCcccccccCCCceeeeeecccCCCCccch
Confidence            999999999999999999999999999999999999999998766433  33344457888884 3221211 1222222


Q ss_pred             ccCCCCCccccCCCCCCCCceecCCCCCCCCCCCccceeEEecCeEEEEEEEECCCcceEEEeEEEEEeecceeeeeeee
Q 045708          535 VKRNPGREDWWAGSAPSGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDAFPIS  614 (1196)
Q Consensus       535 v~~~p~k~~~~~~~~~~~PFIYnPf~k~~~~~~~k~~~~~V~gE~~ev~VtLqNPf~feL~I~sI~L~teGv~Fes~~~s  614 (1196)
                      ....+....+...+..++|| ||||.|+.++...+.+.+||+||+++|.|||||||+|||+|++|+|.++|++|++.+.+
T Consensus       609 ~~~~~~~~~~~~~~~~~~pF-YnPf~k~~~~~~~~~~~~~V~gE~~~v~VtLqNPf~fel~I~~I~L~~egv~fes~~~s  687 (1185)
T PF08626_consen  609 LPPHPRKSEASSQSINKGPF-YNPFSKKSSSSSNKKEPLWVVGEPAEVKVTLQNPFKFELEISSISLSTEGVPFESYPVS  687 (1185)
T ss_pred             hhhhhhhhhhcccCCCCCCc-CChhhcCCcccccccCccEEcCCeEEEEEEEECCccceEEEEEEEEEEcCCccccceee
Confidence            22112222223344467899 99999865554456789999999999999999999999999999999999999999999


Q ss_pred             EEE-CCCCeeEEEEEEEeCeeeeEEEceEEEEEecccccccccchhhhhhhhccCCcccCCccccCCCCc----------
Q 045708          615 VEL-PPNSSKVITLSGIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQGLVLSDPFRCCGSAKL----------  683 (1196)
Q Consensus       615 i~L-~P~S~~~I~Lsg~P~~~G~L~I~G~~~~v~g~~~e~~f~~~~~~~~~~~k~~~~~~~~r~~~~~~~----------  683 (1196)
                      ++| +|+++++|+|+|+|+++|+|+|+||.++++||..++.+....+.  .+.++....++.+. +....          
T Consensus       688 ~~l~~p~s~~~v~L~g~P~~~G~L~I~G~~i~v~g~~~~~~~~~~~~~--~~~k~~~~~~~~~~-~~~~~~~~~~l~~~~  764 (1185)
T PF08626_consen  688 IVLLPPNSTQTVRLSGTPLETGTLKITGCIIKVFGCREEFFPIFKSEW--GSIKGKKLKDKFRK-GSRLDKPSPPLESES  764 (1185)
T ss_pred             eEecCCCcceEEEEEEEECccceEEEEEEEEEEcccccceecccCccc--chhhhhhccccccc-ccccccccccccccc
Confidence            988 99999999999999999999999999999999655543332211  01111111111111 10000          


Q ss_pred             cCcCCceEEEeCCCCcEEEEeeC-CCcceEEecccEEEEEEEEEeccccccceEEEEEecCCCc--------------ce
Q 045708          684 KNVSVPNISVVPPLPLLVSNVVG-GDGAIILYEGEIRDVWISLANAGTVPVEQAHISLSGKNQD--------------SI  748 (1196)
Q Consensus       684 ~~~~~l~i~VIp~qP~L~i~~ts-~~~~vmLleGE~~~f~ItL~N~S~~pV~~l~~sf~d~~~~--------------~i  748 (1196)
                      .....++|+|||+||.|++..++ +++++||||||+++|+|||+|+|++||||+.|+|+|++++              ++
T Consensus       765 ~~~~~l~i~VIp~qP~L~v~~~sl~~~~~mlleGE~~~~~ItL~N~S~~pvd~l~~sf~DS~~~~~~~~l~~k~l~~~e~  844 (1185)
T PF08626_consen  765 PKTKSLSIKVIPPQPLLEVKSSSLTQGALMLLEGEKQTFTITLRNTSSVPVDFLSFSFQDSTIEPLQKALSNKDLSPDEL  844 (1185)
T ss_pred             cccCcceEEEECCCCeEEEEeccCCCcceEEECCcEEEEEEEEEECCccccceEEEEEEeccHHHHhhhhhcccCChhhh
Confidence            12346999999999999998875 8999999999999999999999999999999999997643              45


Q ss_pred             EEEecccc-------ccccCCCCCCEEEEEEEEEEcccCCCCccccccccccCCcccccccCCCCeEEEEeccccCCCCC
Q 045708          749 ISIASETL-------KSALPLKPGAEVIIPVTLKAWQHGPVDPETVAGKIASGSIGRHVKDVSSPSLLIHYAGLLANSED  821 (1196)
Q Consensus       749 ~~~e~e~~-------~~~~~I~PG~s~t~~i~v~g~k~g~~~~~~~~~~~~~~~~~~~~k~~t~~~i~i~Y~~~~g~~~~  821 (1196)
                      |++|++++       ....+|+||++++|++++.| ++|.+++                   +.+.++|+|+|. + .  
T Consensus       845 yelE~~l~~~~~~~i~~~~~I~Pg~~~~~~~~~~~-~~~~~~~-------------------~~~~i~l~y~~~-~-~--  900 (1185)
T PF08626_consen  845 YELEWQLFKLPAFRILNKPPIPPGESATFTVEVDG-KPGPIQL-------------------TYADIQLEYGYS-G-E--  900 (1185)
T ss_pred             hhhhhhhhcCcceeecccCccCCCCEEEEEEEecC-cccccce-------------------eeeeEEEEeccc-C-C--
Confidence            66666542       12239999999999999999 9997666                   778899999997 3 2  


Q ss_pred             CCCCCCeeEEEeeEEEEEEcceEEEeeeeecCCCCccccCCCccccccccccCCccccCCcccccceeec--CCCCCcce
Q 045708          822 QSAVPPGRRLVLPLQICVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDKLMKID--PFRGSWGL  899 (1196)
Q Consensus       822 ~~~~~~~R~l~~pl~vtV~~sle~~~~dilp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d--~~~~~w~l  899 (1196)
                      +.+.+|+|||++|++|||+||||+++|||+|+. +...+++.+  .+.+.            ... .+.|  .+.++|||
T Consensus       901 ~~~~~y~Rql~ipl~vtV~~slev~~~dilp~~-~~~~~~~~~--~~~~~------------~~~-~~~~~~~~~~~~cl  964 (1185)
T PF08626_consen  901 DSSTFYTRQLSIPLTVTVNPSLEVTRCDILPLN-SDSVSSNSD--SWISY------------ITS-LKSDVNDDSSDYCL  964 (1185)
T ss_pred             CCCCCeeEEEEEEEEEEEeceEEEeeeeEEecc-cccccccCc--chhhh------------hhh-hcccccCCCCCeEE
Confidence            245689999999999999999999999999994 222222222  11100            001 1111  34557888


Q ss_pred             eEEEeeecCCCCceEEEEEEEeecCCCCCCCCCCCCCCCccCccceeeCCCCceEEEEeecccccCCCCCCceeecccCC
Q 045708          900 RFLELELSNPTDVVFEISVTVKLENSGNEDSHSADHDATEYGYPKTRIDRDYSARVLIPLEHFKLPILDGSFFVKDMQSN  979 (1196)
Q Consensus       900 ~~l~l~l~N~~~~~f~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~rvl~p~~~~~lp~~~~~~~~~~~~~~  979 (1196)
                        |.|||||+|+.+++|++...    +            ++.+.+.+|+||+|+||+||++|++|+..+.+     .++.
T Consensus       965 --L~lDlrNsw~~~~~v~l~~~----~------------~~~~~~~~I~pg~t~Ri~vPi~Ri~l~~~~~~-----~~pi 1021 (1185)
T PF08626_consen  965 --LLLDLRNSWPNPLSVNLHYD----E------------DFSSSEITIEPGHTSRIIVPIKRIYLEDPDFS-----FKPI 1021 (1185)
T ss_pred             --EEEEEEecCCCceEEEEEec----c------------CccccceEECCCCeEEEEEEecccccCCcccc-----cCcC
Confidence              99999999999988877771    0            11334569999999999999999998876542     1333


Q ss_pred             CCCCCCccccccc-c------cHHHHHHHHHHHhhheeEEEecCCccceeeehHHHHHHHHhhhhhhhccCCcceeeEEE
Q 045708          980 GTSGSRSSSFSEK-N------TKAELNASIRNLISRIKVRWQSGRNSSGELNIKDAVQAALQSSVMDVLLPDPLTFGFRL 1052 (1196)
Q Consensus       980 ~~~~~r~~~~~~~-~------~~~e~~~~~~~l~~~i~~~w~~~~~~~g~l~~~~~~~~~l~~~~~~~~~~d~~~~~~~~ 1052 (1196)
                      +.. +|++||+.+ .      ..+|+|||||+|+++|+++|+++++++|++++|+.||  |+++|+|+|+.||++|+|+|
T Consensus      1022 p~l-~~~rqfv~sk~s~eee~~~re~FW~RE~ll~~l~~~W~~~~~~~G~i~lR~~ir--Lt~~mv~~L~~~~i~i~~~l 1098 (1185)
T PF08626_consen 1022 PSL-SRNRQFVVSKLSEEEERAMRELFWYREELLSRLKGTWKESSNSSGEIDLRGIIR--LTPRMVDILRLDPIQIDFSL 1098 (1185)
T ss_pred             CCc-ccCceeEECCCCHHHHHHHHHHHHHHHHHHhhcceEEEcCCCCcEEEEcccccc--cCHHHHHhhccCccceEEEE
Confidence            333 467777555 2      3379999999999999999998887799999998884  99999999999999999999


Q ss_pred             eecCCcccccCCCCCCCCCCCCcceeecceeeEEEEecCchhcccceeeeeeccCCCccc---cCCCCCcEEeccccccc
Q 045708         1053 VKKGSEQDAELDLPNDSSGPKGSVLAHDMTPMEVLVRNNTKEMIKMSLSITCRDVAGENC---IEGTKPTVLWSGVLNEI 1129 (1196)
Q Consensus      1053 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~v~n~t~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~g~l~~~ 1129 (1196)
                      ..++...      ... ...+..+.++||++|+|.|+|||+++|+  ++ .|.++.+.+|   ++.+ ++|+|+|+||++
T Consensus      1099 ~~~~~~~------~~~-~~~~~~v~~~~f~~l~v~i~N~s~~~i~--l~-~~~~~~~~~~~~~~~~~-~ril~~G~Lq~~ 1167 (1185)
T PF08626_consen 1099 SDDSDSV------KVG-ESSKFSVQVDEFYTLRVTITNRSSRPIS--LR-LQPSLDHQNGNVALDLD-RRILWNGSLQQP 1167 (1185)
T ss_pred             ccccccc------ccC-cceeEEEecCCcEEEEEEeecCCCCcee--eE-eeeeccCCCcccccCcC-CeEEEEccCccc
Confidence            7654111      000 0134567899999999999999999999  33 4445555544   4555 599999999999


Q ss_pred             ccccCCCCceeEEEEEEE
Q 045708         1130 TMEVPPLQESKHCFSLYF 1147 (1196)
Q Consensus      1130 ~~~~~~~~~~~~~~~~~~ 1147 (1196)
                      .++|+|+++++|+++++|
T Consensus      1168 l~~l~p~~~~~~~~~lif 1185 (1185)
T PF08626_consen 1168 LPELEPGESTEHELSLIF 1185 (1185)
T ss_pred             ccccCCCceEEEEEEEEC
Confidence            999999999999999987

To date, two kinds of TRAPP complexes have been studied, TRAPPI and TRAPP II. These complexes differ in subunit composition []. TRAPP I binds vesicles derived from the endoplasmic reticulum bringing them closer to the acceptor membrane. Trs120 is a subunit specific to the TRAPP II complex [] along with Trs65p and Trs130p(TRAPPC10). It is suggested that Trs120p is required for the stability of the Trs130p subunit, suggesting that these two proteins might interact in some way []. It is likely that there is a complex function for TRAPP II in multiple pathways [].

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>KOG1938 consensus Protein with predicted involvement in meiosis (GSG1) [Cell cycle control, cell division, chromosome partitioning]	Back alignment and domain information

>PF12739 TRAPPC-Trs85: ER-Golgi trafficking TRAPP I complex 85 kDa subunit; InterPro: IPR024420 This entry represents Trs85, a subunit of the TRAPP III complex []	Back alignment and domain information

>PF07919 Gryzun: Gryzun, putative trafficking through Golgi; InterPro: IPR012880 The proteins featured in this family are all hypothetical eukaryotic proteins of unknown function	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>KOG1953 consensus Targeting complex (TRAPP) subunit [Intracellular trafficking, secretion, and vesicular transport]	Back alignment and domain information

>COG1470 Predicted membrane protein [Function unknown]	Back alignment and domain information

>PF00927 Transglut_C: Transglutaminase family, C-terminal ig like domain; InterPro: IPR008958 Synonym(s): Protein-glutamine gamma-glutamyltransferase, Fibrinoligase, TGase Transglutaminases catalyse the post-translational modification of proteins at glutamine residues, with formation of isopeptide bonds	Back alignment and domain information

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H	Back alignment and domain information

>PF14874 PapD-like: Flagellar-associated PapD-like	Back alignment and domain information

>PF10633 NPCBM_assoc: NPCBM-associated, NEW3 domain of alpha-galactosidase; InterPro: IPR018905 This domain has been named NEW3, but its function is not known	Back alignment and domain information

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A	Back alignment and domain information

>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo	Back alignment and domain information

>PF06159 DUF974: Protein of unknown function (DUF974); InterPro: IPR010378 This is a family of uncharacterised eukaryotic proteins	Back alignment and domain information

>PF07705 CARDB: CARDB; InterPro: IPR011635 The APHP (acidic peptide-dependent hydrolases/peptidase) domain is found in a variety of different proteins	Back alignment and domain information

>PF03896 TRAP_alpha: Translocon-associated protein (TRAP), alpha subunit; InterPro: IPR005595 The alpha-subunit of the TRAP complex (TRAP alpha) is a single-spanning membrane protein of the endoplasmic reticulum (ER) which is found in proximity of nascent polypeptide chains translocating across the membrane []	Back alignment and domain information

>smart00769 WHy Water Stress and Hypersensitive response	Back alignment and domain information

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A	Back alignment and domain information

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]	Back alignment and domain information

>PF12862 Apc5: Anaphase-promoting complex subunit 5	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		1196
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-09
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-05
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-05

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

 Score = 61.0 bits (147), Expect = 2e-09
 Identities = 112/745 (15%), Positives = 202/745 (27%), Gaps = 264/745 (35%)

Query: 281 EVKFRYNSVILHYRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAAD 340
           E +++Y  ++  +  +F+ +                    F C     KDV ++  S   
Sbjct: 13  EHQYQYKDILSVFEDAFVDN--------------------FDC-----KDVQDMPKSILS 47

Query: 341 GA--KSLIDASDRLILYIEIARLFGTL-DYQRKAA--FFSRQVAQLY------LQQENRS 389
                 +I + D +       RLF TL   Q +    F    +   Y      ++ E R 
Sbjct: 48  KEEIDHIIMSKDAV---SGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ 104

Query: 390 AAICAMQVLAMTTKAYRVQGRASISKSSLSNETGSSLVDGGKMHHQSVQSVVSLFESQWS 449
                    +M T+ Y  Q      +  L N          K +       VS  +    
Sbjct: 105 P--------SMMTRMYIEQ------RDRLYN-DNQVFA---KYN-------VSRLQ---- 135

Query: 450 TLQMVVLREILLSAVRAGDPLAAWSAAARLLRSYYPLITPVGQNG-----LASALANSAE 504
               + LR+ LL                  LR     +   G  G     +A  +  S +
Sbjct: 136 --PYLKLRQALLE-----------------LRP-AKNVLIDGVLGSGKTWVALDVCLSYK 175

Query: 505 ---RLPSG--------TRCADSAL-PFVRLYSF--PLHPSQMDIVKRNPGREDWWAGSAP 550
              ++               ++ L    +L     P   S+ D       R      +  
Sbjct: 176 VQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQ-AEL 234

Query: 551 SGPFIYTPFSKGEPNDSSKQELIWVVGEPVQVLVELANPCGFDLRVDSIYLSVHSGNFDA 610
                  P+         +  L+        VL              ++    ++  ++A
Sbjct: 235 RRLLKSKPY---------ENCLL--------VL-------------LNVQ---NAKAWNA 261

Query: 611 FPISVELPPNSSKVITLS---GIPTSVGPVTIPGCTVHCFGVITEHIFRDVDNLLLGAAQ 667
           F +       S K++  +    +   +   T            T HI  D  ++ L   +
Sbjct: 262 FNL-------SCKILLTTRFKQVTDFLSAAT------------TTHISLDHHSMTLTPDE 302

Query: 668 GLVLSDPFRCCGSAKLKNVSVPNISVVPP-----LPLLVSNVVGGDGAIILYEGEIR-DV 721
              L          K  +    ++   P       P  +S +        + +G    D 
Sbjct: 303 VKSL---L-----LKYLDCRPQDL---PREVLTTNPRRLSII----AE-SIRDGLATWDN 346

Query: 722 WISLANAGTVPVEQAHISLSGKNQDSIISIASETLKSA--------LPLKPGAEVIIPV- 772
           W              H++       +II  +   L+ A        L + P     IP  
Sbjct: 347 W-------------KHVNC--DKLTTIIESSLNVLEPAEYRKMFDRLSVFP-PSAHIPTI 390

Query: 773 TLKA-WQHGPV-DPETVAGKIASGS-IGRHVKDVSSPSLLIH--YAGLLANSEDQSAVPP 827
            L   W      D   V  K+   S + +  K+    ++ I   Y  L    E++ A+  
Sbjct: 391 LLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKE---STISIPSIYLELKVKLENEYAL-- 445

Query: 828 GRRLVLPLQI-CVLQGLSFVKARLLSMEIPAHVSENLPRAVHVETTSCKGLVGSGNRMDK 886
            R +V    I         +    L     +H+  +L    H E                
Sbjct: 446 HRSIVDHYNIPKTFDSDDLIPPY-LDQYFYSHIGHHLKNIEHPE---------------- 488

Query: 887 LMKIDPFRGSW-GLRFLELELSNPTDVVFEISVTVKLENSG---NEDSHSAD--HDATEY 940
             ++  FR  +   RFLE                 K+ +     N      +       Y
Sbjct: 489 --RMTLFRMVFLDFRFLE----------------QKIRHDSTAWNASGSILNTLQQLKFY 530

Query: 941 GYPKTRIDRDYSARVLIPLEHFKLP 965
                  D  Y  R++  +  F LP
Sbjct: 531 KPYICDNDPKYE-RLVNAILDF-LP 553

PyMOL of 1vt4

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		1196
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	97.07
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	96.75
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	96.3
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	96.24
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.18
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	96.08
4a1s_A		411	PINS, partner of inscuteable; cell cycle, LGN, mit	96.06
3sf4_A		406	G-protein-signaling modulator 2; tetratricopeptide	95.96
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	95.93
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	95.81
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	95.72
3ro2_A		338	PINS homolog, G-protein-signaling modulator 2; TPR	95.63
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	95.38
3ulq_A		383	Response regulator aspartate phosphatase F; tetrat	95.35
2ifu_A		307	Gamma-SNAP; membrane fusion, snare complex disasse	94.9
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	94.88
3q15_A		378	PSP28, response regulator aspartate phosphatase H;	94.7
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	94.6
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	94.45
1qqe_A		292	Vesicular transport protein SEC17; helix-turn-heli	94.44
3nf1_A		311	KLC 1, kinesin light chain 1; TPR, structural geno	94.14
2qsv_A		220	Uncharacterized protein; MCSG, structural genomics	94.1
3gw4_A		203	Uncharacterized protein; structural genomics, PSI-	93.72
3ro3_A		164	PINS homolog, G-protein-signaling modulator 2; asy	93.52
3edt_B		283	KLC 2, kinesin light chain 2; superhelical, struct	93.22
2xzz_A		102	Protein-glutamine gamma-glutamyltransferase K; 2.3	92.84
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	91.11
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	90.87
2q3z_A		687	Transglutaminase 2; transglutaminase 2, tissue tra	90.63
4gcn_A		127	Protein STI-1; structural genomics, PSI-biology, m	90.25
1vjj_A		692	Protein-glutamine glutamyltransferase E; transglut	90.21
4b4t_Q		434	26S proteasome regulatory subunit RPN6; hydrolase,	89.97
4i17_A		228	Hypothetical protein; TPR repeats protein, structu	89.78
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	89.41
4gyw_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	88.76
3rkv_A		162	Putative peptidylprolyl isomerase; structural geno	88.57
3but_A		136	Uncharacterized protein AF_0446; lipid binding pro	88.39
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	87.37
1g0d_A		695	Protein-glutamine gamma-glutamyltransferase; tissu	87.27
4gco_A		126	Protein STI-1; structural genomics, PSI-biology, m	86.69
1hz4_A		373	MALT regulatory protein; two-helix bundles, helix	86.32
2hr2_A		159	Hypothetical protein; alpha-alpha superhelix fold,	86.31
1p5q_A		336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	86.15
2fbn_A		198	70 kDa peptidylprolyl isomerase, putative; sulfur	85.96
1ihg_A		370	Cyclophilin 40; ppiase immunophilin tetratricopept	85.93
3vtx_A		184	MAMA; tetratricopeptide repeats (TPR) containing p	85.81
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	85.77
2qfc_A		293	PLCR protein; TPR, HTH, transcription regulation;	84.73
4gyw_A		723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	84.34
2fo7_A		136	Synthetic consensus TPR protein; tetratricopeptide	84.25
3isy_A		120	Bsupi, intracellular proteinase inhibitor; intrace	84.11
2q3z_A		687	Transglutaminase 2; transglutaminase 2, tissue tra	83.61
1ex0_A		731	Coagulation factor XIII A chain; transglutaminase,	83.5
3u3w_A		293	Transcriptional activator PLCR protein; ternary co	83.3
3uq3_A		258	Heat shock protein STI1; HSP90, peptide binding, c	83.19
1kt0_A		457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	83.1
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	82.87
2ho1_A		252	Type 4 fimbrial biogenesis protein PILF; type IV p	82.79
3isy_A		120	Bsupi, intracellular proteinase inhibitor; intrace	82.39
2vq2_A		225	PILW, putative fimbrial biogenesis and twitching m	82.3
3hym_B		330	Cell division cycle protein 16 homolog; APC, anaph	82.05
3as5_A		186	MAMA; tetratricopeptide repeats (TPR) containing p	81.87
3idu_A		127	Uncharacterized protein; all beta-protein, structu	81.76
1hh8_A		213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	81.52
4abn_A		474	Tetratricopeptide repeat protein 5; P53 cofactor,	81.34
3upv_A		126	Heat shock protein STI1; TPR-fold, adaptor protein	80.86
1a17_A		166	Serine/threonine protein phosphatase 5; hydrolase,	80.77
2if4_A		338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	80.74
2ys4_A		122	Hydrocephalus-inducing protein homolog; hydin, PAP	80.43
2q7f_A		243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	80.07

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

Probab=97.07  E-value=0.0058  Score=58.38  Aligned_cols=151  Identities=15%  Similarity=0.091  Sum_probs=107.1

Q ss_pred             ccccceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHH
Q 045708          214 RLARAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILH  292 (1196)
Q Consensus       214 ~~GR~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~l  292 (1196)
                      ..++....+|..+...|+|.+|+..|.+|+...+..+|..+.+.++-.++ +......+        ++....+.+++.+
T Consensus         7 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~A~~~~~~a~~~   78 (164)
T 3ro3_A            7 AQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEF--------ETASEYYKKTLLL   78 (164)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCH--------HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCH--------HHHHHHHHHHHHH
Confidence            45667778999999999999999999999999999999888888777664 32222221        3445567777777


Q ss_pred             HhhcCCCCCCCCCCCchhhHHHHHHHHHHHhhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHH
Q 045708          293 YRKSFIPDNAQRVSPLSFELEATLKLARFLCRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAA  372 (1196)
Q Consensus       293 Y~ks~~p~n~e~~p~l~~~~Ea~Lr~a~~L~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~A  372 (1196)
                      +.+...        + .....+...++..+...+...++.+.+.+++......-+.......+..+|.+|...|=..++.
T Consensus        79 ~~~~~~--------~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  149 (164)
T 3ro3_A           79 ARQLKD--------R-AVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAM  149 (164)
T ss_dssp             HHHTTC--------H-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHHhCC--------c-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHH
Confidence            776531        1 1224667777888877777778888777766442222334566778888888888888877777


Q ss_pred             HHHHHHHHH
Q 045708          373 FFSRQVAQL  381 (1196)
Q Consensus       373 F~lR~l~~~  381 (1196)
                      -+++.+...
T Consensus       150 ~~~~~a~~~  158 (164)
T 3ro3_A          150 HFAEKHLEI  158 (164)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            776665443

PyMOL of 3ro3

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}	Back alignment and structure

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}	Back alignment and structure

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1	Back alignment and structure

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}	Back alignment and structure

>2qsv_A Uncharacterized protein; MCSG, structural genomics, porphyromonas gingivalis W83, PSI protein structure initiative; 2.10A {Porphyromonas gingivalis}	Back alignment and structure

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}	Back alignment and structure

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}	Back alignment and structure

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A	Back alignment and structure

>2xzz_A Protein-glutamine gamma-glutamyltransferase K; 2.30A {Homo sapiens}	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*	Back alignment and structure

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}	Back alignment and structure

>1vjj_A Protein-glutamine glutamyltransferase E; transglutaminase 3, X-RAY crystallography, metalloenzyme, calcium ION; HET: GDP; 1.90A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1sgx_A* 1l9m_A 1l9n_A* 1nud_A 1nuf_A 1nug_A 1rle_A*	Back alignment and structure

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}	Back alignment and structure

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*	Back alignment and structure

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}	Back alignment and structure

>3but_A Uncharacterized protein AF_0446; lipid binding protein, beta barrel, protein structure initia PSI-2; 1.91A {Archaeoglobus fulgidus dsm 4304}	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>1g0d_A Protein-glutamine gamma-glutamyltransferase; tissue transglutaminase,acyltransferase; 2.50A {Pagrus major} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4	Back alignment and structure

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}	Back alignment and structure

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2	Back alignment and structure

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8	Back alignment and structure

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A	Back alignment and structure

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1	Back alignment and structure

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A	Back alignment and structure

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}	Back alignment and structure

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*	Back alignment and structure

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A	Back alignment and structure

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}	Back alignment and structure

>2q3z_A Transglutaminase 2; transglutaminase 2, tissue transglutaminase, TG2, transferas; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1kv3_A 3ly6_A*	Back alignment and structure

>1ex0_A Coagulation factor XIII A chain; transglutaminase, blood coagulation, mutant, W279F, oxyanion, transferase; 2.00A {Homo sapiens} SCOP: b.1.18.9 b.1.5.1 b.1.5.1 d.3.1.4 PDB: 1evu_A 1fie_A 1f13_A 1ggt_A 1ggu_A 1ggy_A 1qrk_A	Back alignment and structure

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A	Back alignment and structure

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A	Back alignment and structure

>3isy_A Bsupi, intracellular proteinase inhibitor; intracellular proteinase inhibitor bsupi, beta sandwich, GRE structural genomics; HET: PG4; 2.61A {Bacillus subtilis}	Back alignment and structure

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}	Back alignment and structure

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}	Back alignment and structure

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A	Back alignment and structure

>3idu_A Uncharacterized protein; all beta-protein, structural genomics, PSI-2, protein structure initiative; 1.70A {Pyrococcus furiosus} PDB: 2kl6_A	Back alignment and structure

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*	Back alignment and structure

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}	Back alignment and structure

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}	Back alignment and structure

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A	Back alignment and structure

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}	Back alignment and structure

>2ys4_A Hydrocephalus-inducing protein homolog; hydin, PAPD-like, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}	Back alignment and structure

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		1196
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	95.97
d1ex0a3		100	Transglutaminase, two C-terminal domains {Human (H	95.94
d1g0da3		101	Transglutaminase, two C-terminal domains {Red sea	95.7
d1vjja3		99	Transglutaminase, two C-terminal domains {Human (H	95.41
d2q3za3		98	Transglutaminase, two C-terminal domains {Human (H	95.25
d2hr2a1		156	Hypothetical protein CT2138 {Chlorobium tepidum [T	93.91
d2c2la1		201	STIP1 homology and U box-containing protein 1, STU	92.41
d2vzsa2		122	Exochitosanase CsxA, domains 2, 4 and 5 {Amycolato	91.8
d1elra_		128	Hop {Human (Homo sapiens) [TaxId: 9606]}	90.99
d1p5qa1		170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	90.6
d1w8oa1		103	Sialidase, "linker" domain {Micromonospora viridif	89.43
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	88.81
d1elwa_		117	Hop {Human (Homo sapiens) [TaxId: 9606]}	88.65
d1qqea_		290	Vesicular transport protein sec17 {Baker's yeast (	88.07
d1hz4a_		366	Transcription factor MalT domain III {Escherichia	87.51
d1hxia_		112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	85.06
d1ihga1		169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	84.38
d1a17a_		159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	83.49
d2fbna1		153	Putative 70 kda peptidylprolyl isomerase PFL2275c	82.29
d1kt1a1		168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	80.09

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.97  E-value=0.037  Score=58.24  Aligned_cols=147  Identities=8%  Similarity=-0.071  Sum_probs=105.9

Q ss_pred             cceeeehhHhhhcCChHHHHHHHHHHHHHhccCCchhhHHHhHHHHH-HHHhhhccCCCchhhHHHHHHHHHHHHHHHhh
Q 045708          217 RAQKTIGDYCLLAGSPVDANAHYSTALELARLTADYFWYAGALEGSV-CALLVDRMGQKDAVLEEEVKFRYNSVILHYRK  295 (1196)
Q Consensus       217 R~~KvlGDl~LLaG~~~DAL~~Y~eAi~~lk~~~D~LWlAsALEGi~-~~llL~~~~~~~~~~~~ei~~~~~~ai~lY~k  295 (1196)
                      -.....|++|-.+|+|.+|+..|..|+++..+.+|.-..|.++..++ |..-+..        +++....++.++.+|.+
T Consensus        38 ~~y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~--------~~~A~~~~~~a~~~~~~  109 (290)
T d1qqea_          38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGN--------SVNAVDSLENAIQIFTH  109 (290)
T ss_dssp             HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC--------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCC--------cHHHHHHHHHhhHHhhh
Confidence            34556799999999999999999999999999999988899988875 4333322        24566778888888887


Q ss_pred             cCCCCCCCCCCCchhhHHHHHHHHHHH-hhccchHHHHHHHHhhccCCCCCCCHHHHHHHHHHHHHHhccCCchhhHHHH
Q 045708          296 SFIPDNAQRVSPLSFELEATLKLARFL-CRRELAKDVVELLTSAADGAKSLIDASDRLILYIEIARLFGTLDYQRKAAFF  374 (1196)
Q Consensus       296 s~~p~n~e~~p~l~~~~Ea~Lr~a~~L-~~~~~~~ei~~~L~~a~~~~~~ll~~~dqi~i~~~lA~vy~~LGf~RK~AF~  374 (1196)
                      ...         ..-...+..+++..+ ...+...++.+.+.++.......-.......++..+|.+|..+|-..++.-+
T Consensus       110 ~~~---------~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~  180 (290)
T d1qqea_         110 RGQ---------FRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI  180 (290)
T ss_dssp             TTC---------HHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             ccc---------chhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHH
Confidence            642         112245666677655 3446667788888877654222222355678889999999999998888887


Q ss_pred             HHHHHH
Q 045708          375 SRQVAQ  380 (1196)
Q Consensus       375 lR~l~~  380 (1196)
                      ...++.
T Consensus       181 ~~~~~~  186 (290)
T d1qqea_         181 YSKLIK  186 (290)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            766544

PyMOL of d1qqea_

>d1ex0a3 b.1.5.1 (A:628-727) Transglutaminase, two C-terminal domains {Human (Homo sapiens), blood isozyme [TaxId: 9606]}	Back information, alignment and structure

>d1g0da3 b.1.5.1 (A:584-684) Transglutaminase, two C-terminal domains {Red sea bream (Chrysophrys major) [TaxId: 143350]}	Back information, alignment and structure

>d1vjja3 b.1.5.1 (A:594-692) Transglutaminase, two C-terminal domains {Human (Homo sapiens), TGase E3 [TaxId: 9606]}	Back information, alignment and structure

>d2q3za3 b.1.5.1 (A:586-683) Transglutaminase, two C-terminal domains {Human (Homo sapiens), tissue isozyme [TaxId: 9606]}	Back information, alignment and structure

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}	Back information, alignment and structure

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}	Back information, alignment and structure

>d2vzsa2 b.1.4.1 (A:778-899) Exochitosanase CsxA, domains 2, 4 and 5 {Amycolatopsis orientalis [TaxId: 31958]}	Back information, alignment and structure

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1w8oa1 b.1.18.2 (A:403-505) Sialidase, "linker" domain {Micromonospora viridifaciens [TaxId: 1881]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}	Back information, alignment and structure

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}	Back information, alignment and structure

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}	Back information, alignment and structure

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	Back information, alignment and structure

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}	Back information, alignment and structure

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}	Back information, alignment and structure