Citrus Sinensis ID: 045814

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------
Protein Sequence
MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN
Secondary Structure (PSIPRED)
cccccHHHHHHHHHcccccccHHHHHHHHcccccccHHHHHHHHHHHHHccccHHHHHHHHHccccccccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHccccHHHHHHHHHHHHHccccccccHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHcccHHHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHcccccccEEHHHHHHHHHHcccHHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEEEHHHHHHHHHHcccHHHHHHHHHHHHHccccccEHHHHHHHHHHHHcccHHHHHHHHHHHHHcccccccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
MGRAPFSVLTILrqnprnfqnpntqlrnlsietKESQQLYTEIAKQVCKItrtkprweqtllsdipsfnfndplFFREFLKQQNNVLLSIRFFQWLhshygfspdlvSCNVLFDSLVEARAFKVAMDfldstgfspnpnsLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEdglvpentAFNKLISRFCEKKNFGRVSELLHTMVARnrapdnftyEEVINGLCKSRKRLEAYRVFNDlkergyvpdtVMYTTVIHGLCKMGWLGDARKMWFEMIHkgllpneytynsmihgyCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN
Flexible Loop (DISEMBL)
MGRAPFSVLTIlrqnprnfqnpntqLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVArnrapdnftyeEVINGLCKSRKRLEAYRVFndlkergyvpdTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIqgyckegkivn
Low Complexity Region (SEG)
MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN
Disordered region (IsUnstruct)
*************************************QLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG****
Disordered Region (DISOPRED)
*****FSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV*
Disordered Region (DISEMBL)
MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN
Disordered Region (DISPRO)
*GRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	427	2.2.26 [Sep-21-2011]
Q8GYM2	483	Pentatricopeptide repeat-	yes	no	0.990	0.875	0.480	1e-125
Q9LFF1	754	Pentatricopeptide repeat-	no	no	0.784	0.444	0.293	9e-45
Q6NQ83	619	Pentatricopeptide repeat-	no	no	0.754	0.520	0.302	1e-43
Q9FMF6	730	Pentatricopeptide repeat-	no	no	0.754	0.441	0.305	2e-43
Q9LPX2	644	Pentatricopeptide repeat-	no	no	0.754	0.5	0.287	4e-43
Q9FIX3	747	Pentatricopeptide repeat-	no	no	0.770	0.440	0.292	5e-43
Q9CAN5	614	Pentatricopeptide repeat-	no	no	0.758	0.527	0.300	2e-42
Q9LSL9	915	Pentatricopeptide repeat-	no	no	0.756	0.353	0.324	3e-42
Q9SH60	666	Pentatricopeptide repeat-	no	no	0.758	0.486	0.297	2e-41
Q9ASZ8	621	Pentatricopeptide repeat-	no	no	0.744	0.512	0.284	3e-41

>sp|Q8GYM2|PP393_ARATH Pentatricopeptide repeat-containing protein At5g18950 OS=Arabidopsis thaliana GN=At5g18950 PE=2 SV=2

 Score =  448 bits (1153), Expect = e-125,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 301/441 (68%), Gaps = 18/441 (4%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKE---------SQQLYTEIAKQVCKIT 51
           M R    +++  R   R  +NPNTQ+R+L++E+++         S   YTE+AK V  I 
Sbjct: 1   MSRGQSYLISFFRNRTR--KNPNTQIRSLTVESRDCESKPDEQKSAVSYTEMAKTVSTIM 58

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           R + RW+QTL+SD PSF+F DPLFF E LK QNNVL S+ FF+WL S+Y ++P  VS N+
Sbjct: 59  RERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYTPGPVSLNI 118

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF +L++ +A K A  FLD+TGF P P  LE Y++CL E GL+EEA   ++ LK+MG+  
Sbjct: 119 LFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNVLKDMGISS 178

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQ 224
           S+ T NS LLGC+K  + D  W+L+ +++ES +       LI+A C+ G VSEGYELL+Q
Sbjct: 179 SVVTCNSVLLGCLKARKLDRFWELHKEMVESEFDSERIRCLIRALCDGGDVSEGYELLKQ 238

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
            L+ GL P    + KLIS FCE  N+  +SE+LHTM+A N  P  + Y+++I GLC ++K
Sbjct: 239 GLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKK 298

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
           +LEAY +F +LK++GY PD V+YTT+I G C+ GWLG ARK+WFEMI KG+ PNE+ YN 
Sbjct: 299 QLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           MIHG+ +   +   +  + EML  GYG T ++ NT+I G C HG++DEA+ +F+ M++ G
Sbjct: 359 MIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETG 418

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  + ITYN LI+G+CKE K+
Sbjct: 419 VTPNAITYNALIKGFCKENKV 439

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LFF1|PP281_ARATH Pentatricopeptide repeat-containing protein At3g53700, chloroplastic OS=Arabidopsis thaliana GN=MEE40 PE=2 SV=1

 Score =  181 bits (459), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 102/348 (29%), Positives = 170/348 (48%), Gaps = 13/348 (3%)

Query: 90  IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLELYIQ 146
           +    W+   +G  PD    N + + LV+  + K   ++   +   G  P+ ++  + I+
Sbjct: 138 LSVVDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNVLIK 197

Query: 147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--- 203
            LC +  +  A      +   G+    KT+ + + G I+    D   ++   ++E G   
Sbjct: 198 ALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFGCSW 257

Query: 204 ------YLIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                  ++  FC +G+V +    ++++  +DG  P+   FN L++  C+  +     E+
Sbjct: 258 SNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHAIEI 317

Query: 257 LHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           +  M+     PD +TY  VI+GLCK  +  EA  V + +  R   P+TV Y T+I  LCK
Sbjct: 318 MDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLISTLCK 377

Query: 317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT 376
              + +A ++   +  KG+LP+  T+NS+I G C   N   A  L +EM  KG      T
Sbjct: 378 ENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPDEFT 437

Query: 377 YNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           YN LI  LC  G+ DEA ++ ++M   G  R VITYNTLI G+CK  K
Sbjct: 438 YNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

May be involved in female gametophyte development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6NQ83|PP247_ARATH Pentatricopeptide repeat-containing protein At3g22470, mitochondrial OS=Arabidopsis thaliana GN=At3g22470 PE=2 SV=1

 Score =  177 bits (450), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 101/334 (30%), Positives = 174/334 (52%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSL-VEARAFK--VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           PDLV+ + L + L ++ R  +  V +D +   GF P+  +    +  LC+SG    A   
Sbjct: 173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIESGYLIQAFCN 211
           F K++E  +  S+  ++  +    K    D    L++         D++    LI   CN
Sbjct: 233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           DGK  +G ++LR+++   ++P+   F+ LI  F ++       EL + M+ R  APD  T
Sbjct: 293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+G CK     EA ++F+ +  +G  PD V Y+ +I+  CK   + D  +++ E+ 
Sbjct: 353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            KGL+PN  TYN+++ G+C+   L  AK L +EM+ +G   + VTY  L+ GLC +G  +
Sbjct: 413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +A  +FE+M +  +   +  YN +I G C   K+
Sbjct: 473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FMF6|PP444_ARATH Pentatricopeptide repeat-containing protein At5g64320, mitochondrial OS=Arabidopsis thaliana GN=At5g64320 PE=2 SV=1

 Score =  176 bits (447), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 103/337 (30%), Positives = 167/337 (49%), Gaps = 15/337 (4%)

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAF 158
           GF+PD ++   L + L +      A D        P P  +     I      G +++A 
Sbjct: 317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI---PKPEIVIFNTLIHGFVTHGRLDDAK 373

Query: 159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQA 208
              S +    G+   + T+NS + G  K     L  ++ HD+   G          L+  
Sbjct: 374 AVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDG 433

Query: 209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
           FC  GK+ E Y +L ++  DGL P    FN LIS FC++       E+   M  +   PD
Sbjct: 434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 493

Query: 269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
            +T+  +I+GLC+  +   A  +  D+   G V +TV Y T+I+   + G + +ARK+  
Sbjct: 494 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553

Query: 329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
           EM+ +G   +E TYNS+I G CR   +++A+ L ++ML  G+  + ++ N LI GLC  G
Sbjct: 554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613

Query: 389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +EA    +EM  +G   D++T+N+LI G C+ G+I
Sbjct: 614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LPX2|PPR39_ARATH Pentatricopeptide repeat-containing protein At1g12775, mitochondrial OS=Arabidopsis thaliana GN=At1g12775 PE=2 SV=1

 Score =  176 bits (445), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 96/334 (28%), Positives = 166/334 (49%), Gaps = 12/334 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P ++  N LF ++ + + +++ +     ++S G + +  +L + I C C    +  AF  
Sbjct: 86  PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G       +N+ L G     R     +L   ++E G+         L+   C 
Sbjct: 146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKVS+   L+ +++E G  P    +  +++  C+        ELL  M  RN   D   
Sbjct: 206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK      A+ +FN+++ +G+  D + Y T+I G C  G   D  K+  +MI
Sbjct: 266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + PN  T++ +I  + +   L EA +L KEM+ +G    T+TYN+LI G C   R +
Sbjct: 326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           EA  + + M  KG   D++T+N LI GYCK  +I
Sbjct: 386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FIX3|PP407_ARATH Pentatricopeptide repeat-containing protein At5g39710 OS=Arabidopsis thaliana GN=EMB2745 PE=2 SV=1

 Score =  176 bits (445), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 111/379 (29%), Positives = 180/379 (47%), Gaps = 50/379 (13%)

Query: 96  LHSHYGFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYIQCLCE 150
           L   +GF P ++S N + D+ + ++     A  V  + L+S   SPN  +  + I+  C 
Sbjct: 159 LAQAHGFMPGVLSYNAVLDATIRSKRNISFAENVFKEMLESQ-VSPNVFTYNILIRGFCF 217

Query: 151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH---------DLIE 201
           +G I+ A   F K++  G   ++ T+N+ + G  K+ + D  +KL           +LI 
Sbjct: 218 AGNIDVALTLFDKMETKGCLPNVVTYNTLIDGYCKLRKIDDGFKLLRSMALKGLEPNLIS 277

Query: 202 SGYLIQAFCNDGKVSE-----------GYEL------------------------LRQVL 226
              +I   C +G++ E           GY L                          ++L
Sbjct: 278 YNVVINGLCREGRMKEVSFVLTEMNRRGYSLDEVTYNTLIKGYCKEGNFHQALVMHAEML 337

Query: 227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL 286
             GL P    +  LI   C+  N  R  E L  M  R   P+  TY  +++G  +     
Sbjct: 338 RHGLTPSVITYTSLIHSMCKAGNMNRAMEFLDQMRVRGLCPNERTYTTLVDGFSQKGYMN 397

Query: 287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI 346
           EAYRV  ++ + G+ P  V Y  +I+G C  G + DA  +  +M  KGL P+  +Y++++
Sbjct: 398 EAYRVLREMNDNGFSPSVVTYNALINGHCVTGKMEDAIAVLEDMKEKGLSPDVVSYSTVL 457

Query: 347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF 406
            G+CR  +++EA R+ +EM++KG    T+TY++LI G C   RT EA  L+EEM + G+ 
Sbjct: 458 SGFCRSYDVDEALRVKREMVEKGIKPDTITYSSLIQGFCEQRRTKEACDLYEEMLRVGLP 517

Query: 407 RDVITYNTLIQGYCKEGKI 425
            D  TY  LI  YC EG +
Sbjct: 518 PDEFTYTALINAYCMEGDL 536

Arabidopsis thaliana (taxid: 3702)

>sp|Q9CAN5|PPR98_ARATH Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana GN=At1g63080 PE=2 SV=1

 Score =  173 bits (439), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 101/336 (30%), Positives = 162/336 (48%), Gaps = 12/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P +V  + L  ++ + + F + + F   ++  G S N  +  + I CLC    +  A   
Sbjct: 63  PSIVEFSKLLSAIAKMKKFDLVISFGEKMEILGVSHNLYTYNIMINCLCRRSQLSFALAI 122

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G   SI T NS L G    +R      L   ++E GY         L+     
Sbjct: 123 LGKMMKLGYGPSIVTLNSLLNGFCHGNRISEAVALVDQMVEMGYQPDTVTFTTLVHGLFQ 182

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             K SE   L+ +++  G  P+   +  +I+  C++        LL+ M       D   
Sbjct: 183 HNKASEAVALVERMVVKGCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVI 242

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  VI+ LCK R   +A  +F ++  +G  PD   Y+++I  LC  G   DA ++  +M+
Sbjct: 243 YSTVIDSLCKYRHVDDALNLFTEMDNKGIRPDVFTYSSLISCLCNYGRWSDASRLLSDML 302

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + PN  T+NS+I  + +   L EA++L  EM+ +      VTYN+LI G C+H R D
Sbjct: 303 ERKINPNVVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLD 362

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
           EA  +F  M  K    DV+TYNTLI G+CK  K+V+
Sbjct: 363 EAQQIFTLMVSKDCLPDVVTYNTLINGFCKAKKVVD 398

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LSL9|PP445_ARATH Pentatricopeptide repeat-containing protein At5g65560 OS=Arabidopsis thaliana GN=At5g65560 PE=2 SV=1

 Score =  172 bits (437), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 109/336 (32%), Positives = 170/336 (50%), Gaps = 13/336 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P + +  VL  SL  +     A++    ++ TG  PN ++  + I  LC     E+A   
Sbjct: 321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLV-----WKLYHDLIESGYLIQAFCN 211
             ++ E G+  ++ T+N+ + G  K     D  D+V      KL  +      LI+ +C 
Sbjct: 381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
              V +   +L ++LE  ++P+   +N LI   C   NF     LL  M  R   PD +T
Sbjct: 441 -SNVHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+ LCKS++  EA  +F+ L+++G  P+ VMYT +I G CK G + +A  M  +M+
Sbjct: 500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            K  LPN  T+N++IHG C    L+EA  L ++M+  G   T  T   LI  L   G  D
Sbjct: 560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
            AY  F++M   G   D  TY T IQ YC+EG++++
Sbjct: 620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655

Arabidopsis thaliana (taxid: 3702)

>sp|Q9SH60|PP103_ARATH Pentatricopeptide repeat-containing protein At1g64100 OS=Arabidopsis thaliana GN=At1g64100 PE=2 SV=2

 Score =  170 bits (430), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 101/339 (29%), Positives = 166/339 (48%), Gaps = 15/339 (4%)

Query: 89  SIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYI 145
           +I FF ++     F    V CN +    V      VA+     ++      N  S  + I
Sbjct: 90  AIDFFDYMVRSRPFYT-AVDCNKVIGVFVRMNRPDVAISLYRKMEIRRIPLNIYSFNILI 148

Query: 146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL 205
           +C C+   +  +   F KL ++G    + T+N+ L G    DR      L+  ++E+G+L
Sbjct: 149 KCFCDCHKLSFSLSTFGKLTKLGFQPDVVTFNTLLHGLCLEDRISEALALFGYMVETGFL 208

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
                      E   L  Q++E GL P    FN LI+  C +      + L++ MV +  
Sbjct: 209 -----------EAVALFDQMVEIGLTPVVITFNTLINGLCLEGRVLEAAALVNKMVGKGL 257

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             D  TY  ++NG+CK      A  + + ++E    PD V+Y+ +I  LCK G   DA+ 
Sbjct: 258 HIDVVTYGTIVNGMCKMGDTKSALNLLSKMEETHIKPDVVIYSAIIDRLCKDGHHSDAQY 317

Query: 326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           ++ EM+ KG+ PN +TYN MI G+C      +A+RL ++M+++      +T+N LI+   
Sbjct: 318 LFSEMLEKGIAPNVFTYNCMIDGFCSFGRWSDAQRLLRDMIEREINPDVLTFNALISASV 377

Query: 386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
             G+  EA  L +EM  + IF D +TYN++I G+CK  +
Sbjct: 378 KEGKLFEAEKLCDEMLHRCIFPDTVTYNSMIYGFCKHNR 416

Arabidopsis thaliana (taxid: 3702)

>sp|Q9ASZ8|PPR37_ARATH Pentatricopeptide repeat-containing protein At1g12620 OS=Arabidopsis thaliana GN=At1g12620 PE=2 SV=1

 Score =  169 bits (429), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 94/330 (28%), Positives = 163/330 (49%), Gaps = 12/330 (3%)

Query: 104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
           P L+  + LF  +   + + + +D    ++  G + N  +L + I C C    +  AF A
Sbjct: 70  PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCN 211
             K+ ++G      T+++ + G     R     +L   ++E G+         L+   C 
Sbjct: 130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query: 212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
           +GKVS+   L+ +++E G  P    +  ++   C+        ELL  M  R    D   
Sbjct: 190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query: 272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
           Y  +I+GLCK      A+ +FN+++ +G+  D ++YTT+I G C  G   D  K+  +MI
Sbjct: 250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query: 332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
            + + P+   ++++I  + +   L EA+ LHKEM+ +G    TVTY +LI G C   + D
Sbjct: 310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query: 392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
           +A H+ + M  KG   ++ T+N LI GYCK
Sbjct: 370 KANHMLDLMVSKGCGPNIRTFNILINGYCK 399

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
297736961	636	unnamed protein product [Vitis vinifera]	0.953	0.639	0.606	1e-154
449480434	638	PREDICTED: pentatricopeptide repeat-cont	0.983	0.658	0.579	1e-145
449433055	602	PREDICTED: pentatricopeptide repeat-cont	0.983	0.697	0.579	1e-145
90657590	719	hypothetical protein [Cleome spinosa]	0.990	0.588	0.515	1e-133
356523408	577	PREDICTED: pentatricopeptide repeat-cont	0.934	0.691	0.562	1e-131
357494871	861	Pentatricopeptide repeat-containing prot	0.939	0.465	0.545	1e-130
297812073	483	pentatricopeptide repeat-containing prot	0.990	0.875	0.498	1e-129
15239614	483	pentatricopeptide repeat-containing prot	0.990	0.875	0.480	1e-123
218192883	473	hypothetical protein OsI_11678 [Oryza sa	0.606	0.547	0.427	3e-60
115453133	564	Os03g0363700 [Oryza sativa Japonica Grou	0.606	0.459	0.427	6e-60

>gi|297736961|emb|CBI26162.3| unnamed protein product [Vitis vinifera]

 Score =  552 bits (1422), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 260/429 (60%), Positives = 320/429 (74%), Gaps = 22/429 (5%)

Query: 20  QNPNTQLRNLSIETKES-------------QQLYTEIAKQVCKITRTKPRWEQTLLSDIP 66
           QNPN+++RNL + +                QQ   EI K+V  ITRT+PRWEQTLLSD P
Sbjct: 61  QNPNSRIRNLGVVSGNQYGDVEGAHQHTQQQQHLEEIVKRVSDITRTRPRWEQTLLSDFP 120

Query: 67  SFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAM 126
           SFNF DP F   F++ Q N L+S+RFF WL S  GFSPD  SCNVLFD+LVEA A   A 
Sbjct: 121 SFNFLDPTFLSHFVEHQKNALISLRFFHWLSSQSGFSPDSSSCNVLFDALVEAGACNAAK 180

Query: 127 DFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI 186
            FLDST F+P P SLE YI+CLC+ GL+EEA   F +LK +GV  SI TWNS L G ++ 
Sbjct: 181 SFLDSTNFNPKPASLEAYIRCLCKGGLVEEAISVFGQLKGIGVCASIATWNSVLRGSVRA 240

Query: 187 DRTDLVWKLYHDLIES---------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF 237
            R D VW+LY +++ES         GYL+QAFC++ ++S+G+ LLR+VLEDG+VP N AF
Sbjct: 241 GRIDFVWELYGEMVESSVVADVHTVGYLVQAFCDENRISDGHNLLRRVLEDGVVPRNAAF 300

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE 297
           NKLIS FC+ K +GRVS+LLH+M+ARNRAPD FTY+EV+NGLCK  K  E +RVF DLK+
Sbjct: 301 NKLISGFCKDKAYGRVSDLLHSMIARNRAPDIFTYQEVVNGLCKGGKGPEGFRVFKDLKD 360

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE 357
           RGY PD VMYTT+IHGLC+M WLGDARK+WFEMI KG LPNEYTYN+MIHGY +I NLEE
Sbjct: 361 RGYAPDRVMYTTMIHGLCRMKWLGDARKLWFEMIQKGFLPNEYTYNAMIHGYFKIGNLEE 420

Query: 358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ 417
           A ++++EM DKGYGE TV+YN +I GLC HG+  EA+ LFEEM+ KGI R+ ITYN L++
Sbjct: 421 AWKMYREMCDKGYGEKTVSYNVMIKGLCSHGKIKEAHDLFEEMSHKGILRNHITYNALVR 480

Query: 418 GYCKEGKIV 426
           G+CKEGKIV
Sbjct: 481 GFCKEGKIV 489

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449480434|ref|XP_004155892.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18950-like [Cucumis sativus]

 Score =  521 bits (1343), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/449 (57%), Positives = 319/449 (71%), Gaps = 29/449 (6%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIET----------KESQQL--------YTEIAKQVC 48
           S++  +RQN R  +N    +RNLS+ET          + S++L         +EIA +V 
Sbjct: 42  SLMISIRQNSRFVKNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEIAAEVG 101

Query: 49  KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVS 108
           K+ R+KPRWEQ+LLSD PSFNF+DP FF E LKQ NNV LS+RFF WL S   F P  VS
Sbjct: 102 KVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFLPHPVS 161

Query: 109 CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           CN LFD+L+EA+A   A  FL S  FSP P SLE YI+C+CE GL+EEA   F  LKE G
Sbjct: 162 CNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAG 221

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSE 217
               ++TWN A   C+K  RTDL+WKLY  ++E+G           YLIQAFCND KVS 
Sbjct: 222 YRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSR 281

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            YE+LRQ LEDGL P N AFNKLIS FC++KN  RV EL+HTM+ +NR PD FTY+E+IN
Sbjct: 282 AYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIIN 341

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+   L+A+ VFN LK+RGY PD VMYTT+IHG CKMG L DA K+WFEMI KG LP
Sbjct: 342 GFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLP 401

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NEY+YN++I+G+C+I NL+EA +L+K+MLD GY ETT++ NTLI GLCLHGRTDEAY  F
Sbjct: 402 NEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFF 461

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EM  K I  DVITYNTLIQG+C+EGK++
Sbjct: 462 REMPCKNIVCDVITYNTLIQGFCREGKVL 490

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433055|ref|XP_004134313.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18950-like [Cucumis sativus]

 Score =  521 bits (1342), Expect = e-145,   Method: Compositional matrix adjust.
 Identities = 260/449 (57%), Positives = 319/449 (71%), Gaps = 29/449 (6%)

Query: 7   SVLTILRQNPRNFQNPNTQLRNLSIET----------KESQQL--------YTEIAKQVC 48
           S++  +RQN R  +N    +RNLS+ET          + S++L         +EIA +V 
Sbjct: 6   SLMISIRQNSRFVKNLRIHIRNLSVETNGGNNGREEIESSEKLLNLTQRKDVSEIAAEVG 65

Query: 49  KITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVS 108
           K+ R+KPRWEQ+LLSD PSFNF+DP FF E LKQ NNV LS+RFF WL S   F P  VS
Sbjct: 66  KVIRSKPRWEQSLLSDYPSFNFHDPSFFSELLKQLNNVFLSLRFFLWLSSQPEFLPHPVS 125

Query: 109 CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG 168
           CN LFD+L+EA+A   A  FL S  FSP P SLE YI+C+CE GL+EEA   F  LKE G
Sbjct: 126 CNKLFDALLEAKACVPAKSFLYSFEFSPEPASLENYIRCVCEGGLVEEAVYTFDMLKEAG 185

Query: 169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSE 217
               ++TWN A   C+K  RTDL+WKLY  ++E+G           YLIQAFCND KVS 
Sbjct: 186 YRPYVETWNFAFQSCLKFGRTDLIWKLYEGMMETGVQKDVDIETVGYLIQAFCNDNKVSR 245

Query: 218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN 277
            YE+LRQ LEDGL P N AFNKLIS FC++KN  RV EL+HTM+ +NR PD FTY+E+IN
Sbjct: 246 AYEILRQSLEDGLTPCNDAFNKLISGFCKEKNHHRVLELVHTMIVKNRNPDIFTYQEIIN 305

Query: 278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP 337
           G CK+   L+A+ VFN LK+RGY PD VMYTT+IHG CKMG L DA K+WFEMI KG LP
Sbjct: 306 GFCKNWMTLQAFEVFNALKDRGYAPDMVMYTTLIHGFCKMGQLEDASKLWFEMIDKGFLP 365

Query: 338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF 397
           NEY+YN++I+G+C+I NL+EA +L+K+MLD GY ETT++ NTLI GLCLHGRTDEAY  F
Sbjct: 366 NEYSYNTLIYGFCKIGNLDEAMKLYKKMLDSGYKETTLSCNTLILGLCLHGRTDEAYDFF 425

Query: 398 EEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            EM  K I  DVITYNTLIQG+C+EGK++
Sbjct: 426 REMPCKNIVCDVITYNTLIQGFCREGKVL 454

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|90657590|gb|ABD96889.1| hypothetical protein [Cleome spinosa]

 Score =  482 bits (1240), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 235/456 (51%), Positives = 317/456 (69%), Gaps = 33/456 (7%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKE--------------------SQQLY 40
           M RA   V +  R   R  +NPN QLRNLS++ K+                    S++ Y
Sbjct: 1   MIRASSYVNSFFRHRAR--RNPNAQLRNLSVDGKDGVSEAEGSGSIGGERVSQDISRRNY 58

Query: 41  TEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHY 100
           TE+AK V  ITR KPRWEQTL+SD PSFNF DPLFFRE +  QNNVLLS+RFFQWL +++
Sbjct: 59  TEMAKIVATITREKPRWEQTLVSDFPSFNFADPLFFRELVATQNNVLLSLRFFQWLCTNH 118

Query: 101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
             +PD +S N+LF++L++A+A + A    D  GF P+  SLE Y++CLC  G IEEA   
Sbjct: 119 DCTPDPISSNMLFEALLDAKAVRAAKMVRDIAGFIPDSASLEQYVKCLCGVGFIEEAIEV 178

Query: 161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----------LIQAF 209
           + +LKE G+  SI   NS L GC+K  +T+L+++ Y ++I++G            LIQAF
Sbjct: 179 YFQLKEAGIRISIVACNSILSGCLKAGKTELLFEFYQEMIKAGTASDANTETVGCLIQAF 238

Query: 210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN 269
           C+ G+V+ GYELL Q L+ GL P N  +NKLI+ FC+ KN+  +SE+LHTM+ARN  P  
Sbjct: 239 CDSGQVARGYELLNQFLKTGLDPGNPTYNKLIAGFCQAKNYASMSEVLHTMIARNHLPTI 298

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFE 329
           +TY+E+INGLCK+ + LEAYRVFNDLK+RGY PD VMYTT+IHGLC+MG  G+ARK+WFE
Sbjct: 299 YTYQEIINGLCKNEECLEAYRVFNDLKDRGYAPDRVMYTTMIHGLCEMGSFGEARKLWFE 358

Query: 330 MIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR 389
           M+ KG+ PN YTYN+M+HG  +  + E A  L+ EM +KGYG TTVT N +I+ LC  G+
Sbjct: 359 MMDKGMQPNAYTYNTMLHGSLKSGDFERACELYNEMCNKGYGTTTVTCNKIISELCSRGK 418

Query: 390 TDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           +DEA+ +F++M++ GI  D ITYN+LI+G+CKEGK+
Sbjct: 419 SDEAFEVFKKMSETGIQADAITYNSLIRGFCKEGKV 454

Source: Cleome spinosa

Species: Cleome spinosa

Genus: Cleome

Family: Cleomaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356523408|ref|XP_003530332.1| PREDICTED: pentatricopeptide repeat-containing protein At5g18950-like [Glycine max]

 Score =  474 bits (1220), Expect = e-131,   Method: Compositional matrix adjust.
 Identities = 238/423 (56%), Positives = 296/423 (69%), Gaps = 24/423 (5%)

Query: 24  TQLRNLSIETKESQQLYTEIA---------KQVCKITRTKPRWEQTLLSDIPSFNFNDPL 74
            Q RNL+ ETK     +   A          ++C+ITRTKPRWE TLLS  PSFNF DP 
Sbjct: 22  AQFRNLTSETKNGDHEHPTKALDAKDCNFVYEICRITRTKPRWEDTLLSQYPSFNFKDPS 81

Query: 75  FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF 134
           FF  +LK QNN  LS+RFF WL S  GFSPD  SCNVLF  LV+A A K+A   LDS GF
Sbjct: 82  FFLLYLKHQNNAFLSLRFFHWLCSSCGFSPDQSSCNVLFQVLVDAGAGKLAKSLLDSPGF 141

Query: 135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK 194
           +P P SLE YIQCL  +G++E+A      LK +    S+ TWN++LLGC++  RTDLVW 
Sbjct: 142 TPEPASLEGYIQCLSGAGMVEDAV---DMLKRVVFCPSVATWNASLLGCLRARRTDLVWT 198

Query: 195 LYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR 243
           LY  ++ESG           YLI AFC + KV +GYELL+++LE+GL P+N  FN+LI  
Sbjct: 199 LYEQMMESGVVASINVETVGYLIMAFCAEYKVLKGYELLKELLENGLCPDNVVFNELIRG 258

Query: 244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD 303
           FC++  + RVSE+LH M+A+   PD  TY+E+I GL K  K  E ++VFNDLK+RGY PD
Sbjct: 259 FCKEGQYDRVSEILHIMIAKQCNPDVSTYQEIIYGLLK-MKNSEGFQVFNDLKDRGYFPD 317

Query: 304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK 363
            VMYTTVI GLC+M  LG+ARK+WFEMI KG  PNEYTYN M+HGYC+I +L EA+++ +
Sbjct: 318 RVMYTTVIKGLCEMQRLGEARKLWFEMIKKGFQPNEYTYNVMMHGYCKIGDLAEARKIFE 377

Query: 364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           +M D+GY ETTV+Y T+I+GLCLHGRTDEA  LFEEM QKGI  D+ITYN LI+  CKE 
Sbjct: 378 DMRDRGYAETTVSYGTMISGLCLHGRTDEAQSLFEEMFQKGIVPDLITYNCLIKALCKEV 437

Query: 424 KIV 426
           KIV
Sbjct: 438 KIV 440

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357494871|ref|XP_003617724.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355519059|gb|AET00683.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]

 Score =  472 bits (1214), Expect = e-130,   Method: Compositional matrix adjust.
 Identities = 227/416 (54%), Positives = 294/416 (70%), Gaps = 15/416 (3%)

Query: 26  LRNLSIETKESQ----QLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLK 81
            RNL+ ET   Q    Q +T+   ++C ITR+KPRWE TL+S  PSFNF++P FF  +LK
Sbjct: 13  FRNLTTETTTKQDPKDQNFTQTLNEICTITRSKPRWENTLISQYPSFNFSNPKFFLSYLK 72

Query: 82  QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL 141
            QNN  LS+RF  WL SH GF PD  SCN LFD+LV+A A K A   L+   F P  +SL
Sbjct: 73  HQNNTFLSLRFLHWLTSHCGFKPDQSSCNALFDALVDAGAVKAAKSLLEYPDFVPKNDSL 132

Query: 142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE 201
           E Y++ L E+G++EE F  F  LK++G   S  ++N  LL C+K+ RTDLVWKLY  +IE
Sbjct: 133 EGYVRLLGENGMVEEVFDVFVSLKKVGFLPSASSFNVCLLACLKVGRTDLVWKLYELMIE 192

Query: 202 SGY-----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF 250
           SG            LI+AFC + KV  GYELLRQVLE GL  +NT FN LI+ FC++K +
Sbjct: 193 SGVGVNIDVETVGCLIKAFCAENKVFNGYELLRQVLEKGLCVDNTVFNALINGFCKQKQY 252

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV 310
            RVSE+LH M+A    P  +TY+E+INGL K RK  EA+RVFNDLK+RGY PD VMYTTV
Sbjct: 253 DRVSEILHIMIAMKCNPSIYTYQEIINGLLKRRKNDEAFRVFNDLKDRGYFPDRVMYTTV 312

Query: 311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
           I G C MG L +ARK+WFEMI KGL+PNEYTYN MI+GYC++ +  EA++L+ +M  +GY
Sbjct: 313 IKGFCDMGLLAEARKLWFEMIQKGLVPNEYTYNVMIYGYCKVRDFAEARKLYDDMCGRGY 372

Query: 371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV 426
            E  V+Y+T+I+GL LHG+TDEA  LF EM++KGI RD+I+YN+LI+G C+EG++ 
Sbjct: 373 AENVVSYSTMISGLYLHGKTDEALSLFHEMSRKGIARDLISYNSLIKGLCQEGELA 428

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297812073|ref|XP_002873920.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319757|gb|EFH50179.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata]

 Score =  468 bits (1204), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 220/441 (49%), Positives = 308/441 (69%), Gaps = 18/441 (4%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQ---------LYTEIAKQVCKIT 51
           M R    ++   R   R  QNPN Q+R+L++E+++S+           YTE+AK V  I 
Sbjct: 1   MSRGQSYLINFFRNRTR--QNPNAQIRSLTVESRDSESKPDEQKSAVSYTEMAKTVSTIM 58

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           R + RW+QTL+SD PSF+F DPLFFR+ LK QNNV+ S+ FF+WL S+Y ++PD VS N+
Sbjct: 59  RQRQRWQQTLVSDFPSFDFADPLFFRQLLKSQNNVMFSLWFFRWLCSNYDYTPDSVSLNL 118

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF +L++ +A K A  FLD+TGF P P  LE Y++CL E GL+EEA   ++ LKEMG+  
Sbjct: 119 LFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNVLKEMGISS 178

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQ 224
           S+ T NS LLGC+K  + D  W+L+ ++IES +       LIQA C+ G+VSEGYELL+Q
Sbjct: 179 SVVTCNSVLLGCLKARKLDRFWELHKEMIESEFDLERIRCLIQALCDGGEVSEGYELLKQ 238

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
            L+ GL P +  + KLIS FCE +N+  +SE+LHTM+A N  P  +TY+ +I GLC ++K
Sbjct: 239 GLKQGLDPGHDVYAKLISGFCEIENYACISEILHTMIAWNHFPSIYTYQRIIKGLCMNKK 298

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
            LEAY +F +LKE+GY PD V+YTT+IHG C+ GWLG ARK+WFEMI KG+ PNE+ YN 
Sbjct: 299 ELEAYCIFKNLKEKGYAPDRVVYTTMIHGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           M+HG+ +   +   +  + EML  GYGETT++ NT+I GLC HG++DEA+ +F++M++ G
Sbjct: 359 MMHGHFKRGEISLGEAFYNEMLRNGYGETTLSCNTVIRGLCSHGKSDEAFEIFKKMSETG 418

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  + ITYN LI+G CKE K+
Sbjct: 419 VTPNAITYNALIKGLCKENKV 439

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15239614|ref|NP_197396.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|223635758|sp|Q8GYM2.2|PP393_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g18950 gi|332005249|gb|AED92632.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]

 Score =  448 bits (1153), Expect = e-123,   Method: Compositional matrix adjust.
 Identities = 212/441 (48%), Positives = 301/441 (68%), Gaps = 18/441 (4%)

Query: 1   MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKE---------SQQLYTEIAKQVCKIT 51
           M R    +++  R   R  +NPNTQ+R+L++E+++         S   YTE+AK V  I 
Sbjct: 1   MSRGQSYLISFFRNRTR--KNPNTQIRSLTVESRDCESKPDEQKSAVSYTEMAKTVSTIM 58

Query: 52  RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
           R + RW+QTL+SD PSF+F DPLFF E LK QNNVL S+ FF+WL S+Y ++P  VS N+
Sbjct: 59  RERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYTPGPVSLNI 118

Query: 112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
           LF +L++ +A K A  FLD+TGF P P  LE Y++CL E GL+EEA   ++ LK+MG+  
Sbjct: 119 LFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNVLKDMGISS 178

Query: 172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQ 224
           S+ T NS LLGC+K  + D  W+L+ +++ES +       LI+A C+ G VSEGYELL+Q
Sbjct: 179 SVVTCNSVLLGCLKARKLDRFWELHKEMVESEFDSERIRCLIRALCDGGDVSEGYELLKQ 238

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
            L+ GL P    + KLIS FCE  N+  +SE+LHTM+A N  P  + Y+++I GLC ++K
Sbjct: 239 GLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKK 298

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
           +LEAY +F +LK++GY PD V+YTT+I G C+ GWLG ARK+WFEMI KG+ PNE+ YN 
Sbjct: 299 QLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           MIHG+ +   +   +  + EML  GYG T ++ NT+I G C HG++DEA+ +F+ M++ G
Sbjct: 359 MIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETG 418

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  + ITYN LI+G+CKE K+
Sbjct: 419 VTPNAITYNALIKGFCKENKV 439

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218192883|gb|EEC75310.1| hypothetical protein OsI_11678 [Oryza sativa Indica Group]

 Score =  238 bits (608), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 164/269 (60%), Gaps = 10/269 (3%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQAFCNDGKVS 216
           +G+  S++  N A+   ++  R DLV++L+           D     +L++A   +G+  
Sbjct: 143 LGIHPSLRALNFAMRSALRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPL 202

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +G  LLR     G+ P+  A   L++ F    NFG+VSE LH M+A    PD   Y+ +I
Sbjct: 203 DGLRLLRDGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRII 262

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +GL   +   EA RVFN++K RGY  D V YTT I GLCKMG + +AR++W EM+ KG+ 
Sbjct: 263 HGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME 322

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PNEY Y S++  YC+  + E A++++ EML KG  E+TV+ N L+ G C HGR DEA  +
Sbjct: 323 PNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGM 382

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FEEM +KGI  DVITYN LIQG CK G++
Sbjct: 383 FEEMVKKGIEHDVITYNILIQGLCKAGRL 411

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115453133|ref|NP_001050167.1| Os03g0363700 [Oryza sativa Japonica Group] gi|108708311|gb|ABF96106.1| pentatricopeptide, putative [Oryza sativa Japonica Group] gi|113548638|dbj|BAF12081.1| Os03g0363700 [Oryza sativa Japonica Group]

 Score =  238 bits (606), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 115/269 (42%), Positives = 164/269 (60%), Gaps = 10/269 (3%)

Query: 167 MGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------DLIESGYLIQAFCNDGKVS 216
           +G+  S++  N A+   ++  R DLV++L+           D     +L++A   +G+  
Sbjct: 143 LGIHPSLRALNFAMRSALRAARPDLVFRLFSAFSSSPDFPGDAATVAFLVRACSAEGRPL 202

Query: 217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI 276
           +G  LLR     G+ P+  A   L++ F    NFG+VSE LH M+A    PD   Y+ +I
Sbjct: 203 DGLRLLRDGARRGVPPQLDAVADLVAAFSAAANFGKVSETLHLMIAAGSVPDTVIYQRII 262

Query: 277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL 336
           +GL   +   EA RVFN++K RGY  D V YTT I GLCKMG + +AR++W EM+ KG+ 
Sbjct: 263 HGLFAHKMGSEALRVFNEIKLRGYNVDAVTYTTAIDGLCKMGCIDEARQIWNEMVDKGME 322

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           PNEY Y S++  YC+  + E A++++ EML KG  E+TV+ N L+ G C HGR DEA  +
Sbjct: 323 PNEYAYCSLVAYYCKAGDFEMARKVYDEMLGKGLKESTVSCNILVTGFCTHGRVDEALGM 382

Query: 397 FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
           FEEM +KGI  DVITYN LIQG CK G++
Sbjct: 383 FEEMVKKGIEHDVITYNILIQGLCKAGRL 411

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	427
TAIR|locus:2144915	483	AT5G18950 "AT5G18950" [Arabido	0.990	0.875	0.478	8.2e-115
TAIR|locus:2173403	730	AT5G64320 "AT5G64320" [Arabido	0.754	0.441	0.308	6e-44
TAIR|locus:2083976	754	MEE40 "maternal effect embryo	0.786	0.445	0.296	1.8e-42
TAIR|locus:1009023134	644	AT1G12775 [Arabidopsis thalian	0.754	0.5	0.290	4.7e-42
TAIR|locus:2077061	619	AT3G22470 "AT3G22470" [Arabido	0.754	0.520	0.305	6.6e-42
TAIR|locus:2015228	614	AT1G63080 [Arabidopsis thalian	0.751	0.522	0.296	7.5e-41
TAIR|locus:2195047	621	AT1G12620 [Arabidopsis thalian	0.754	0.518	0.287	2.3e-40
TAIR|locus:2155730	915	AT5G65560 "AT5G65560" [Arabido	0.756	0.353	0.324	4.5e-40
TAIR|locus:2026192	630	RPF2 "rna processing factor 2"	0.761	0.515	0.290	1.9e-39
TAIR|locus:2031301	577	AT1G63400 [Arabidopsis thalian	0.751	0.556	0.290	2.3e-39

TAIR|locus:2144915 AT5G18950 "AT5G18950" [Arabidopsis thaliana (taxid:3702)]

 Score = 1132 (403.5 bits), Expect = 8.2e-115, P = 8.2e-115
 Identities = 211/441 (47%), Positives = 301/441 (68%)

Query:     1 MGRAPFSVLTILRQNPRNFQNPNTQLRNLSIETKESQQL---------YTEIAKQVCKIT 51
             M R    +++  R   R  +NPNTQ+R+L++E+++ +           YTE+AK V  I 
Sbjct:     1 MSRGQSYLISFFRNRTR--KNPNTQIRSLTVESRDCESKPDEQKSAVSYTEMAKTVSTIM 58

Query:    52 RTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNV 111
             R + RW+QTL+SD PSF+F DPLFF E LK QNNVL S+ FF+WL S+Y ++P  VS N+
Sbjct:    59 RERQRWQQTLVSDFPSFDFADPLFFGELLKSQNNVLFSLWFFRWLCSNYDYTPGPVSLNI 118

Query:   112 LFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG 171
             LF +L++ +A K A  FLD+TGF P P  LE Y++CL E GL+EEA   ++ LK+MG+  
Sbjct:   119 LFGALLDGKAVKAAKSFLDTTGFKPEPTLLEQYVKCLSEEGLVEEAIEVYNVLKDMGISS 178

Query:   172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQ 224
             S+ T NS LLGC+K  + D  W+L+ +++ES +       LI+A C+ G VSEGYELL+Q
Sbjct:   179 SVVTCNSVLLGCLKARKLDRFWELHKEMVESEFDSERIRCLIRALCDGGDVSEGYELLKQ 238

Query:   225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
              L+ GL P    + KLIS FCE  N+  +SE+LHTM+A N  P  + Y+++I GLC ++K
Sbjct:   239 GLKQGLDPGQYVYAKLISGFCEIGNYACMSEVLHTMIAWNHFPSMYIYQKIIKGLCMNKK 298

Query:   285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             +LEAY +F +LK++GY PD V+YTT+I G C+ GWLG ARK+WFEMI KG+ PNE+ YN 
Sbjct:   299 QLEAYCIFKNLKDKGYAPDRVVYTTMIRGFCEKGWLGSARKLWFEMIKKGMRPNEFAYNV 358

Query:   345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
             MIHG+ +   +   +  + EML  GYG T ++ NT+I G C HG++DEA+ +F+ M++ G
Sbjct:   359 MIHGHFKRGEISLVEAFYNEMLRNGYGGTMLSCNTMIKGFCSHGKSDEAFEIFKNMSETG 418

Query:   405 IFRDVITYNTLIQGYCKEGKI 425
             +  + ITYN LI+G+CKE K+
Sbjct:   419 VTPNAITYNALIKGFCKENKV 439

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0006259 "DNA metabolic process" evidence=RCA

GO:0007059 "chromosome segregation" evidence=RCA

GO:0007062 "sister chromatid cohesion" evidence=RCA

GO:0007126 "meiosis" evidence=RCA

GO:0007129 "synapsis" evidence=RCA

GO:0007131 "reciprocal meiotic recombination" evidence=RCA

GO:0009410 "response to xenobiotic stimulus" evidence=RCA

GO:0010332 "response to gamma radiation" evidence=RCA

GO:0032204 "regulation of telomere maintenance" evidence=RCA

GO:0032504 "multicellular organism reproduction" evidence=RCA

GO:0033044 "regulation of chromosome organization" evidence=RCA

GO:0042138 "meiotic DNA double-strand break formation" evidence=RCA

GO:0043247 "telomere maintenance in response to DNA damage" evidence=RCA

GO:0045132 "meiotic chromosome segregation" evidence=RCA

GO:0048522 "positive regulation of cellular process" evidence=RCA

TAIR|locus:2173403 AT5G64320 "AT5G64320" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.0e-44, Sum P(2) = 6.0e-44
 Identities = 104/337 (30%), Positives = 168/337 (49%)

Query:   101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSL--ELYIQCLCESGLIEEAF 158
             GF+PD ++   L + L +      A D        P P  +     I      G +++A 
Sbjct:   317 GFAPDDITYGYLMNGLCKIGRVDAAKDLFYRI---PKPEIVIFNTLIHGFVTHGRLDDAK 373

Query:   159 CAFSKL-KEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----Y----LIQA 208
                S +    G+   + T+NS + G  K     L  ++ HD+   G     Y    L+  
Sbjct:   374 AVLSDMVTSYGIVPDVCTYNSLIYGYWKEGLVGLALEVLHDMRNKGCKPNVYSYTILVDG 433

Query:   209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
             FC  GK+ E Y +L ++  DGL P    FN LIS FC++       E+   M  +   PD
Sbjct:   434 FCKLGKIDEAYNVLNEMSADGLKPNTVGFNCLISAFCKEHRIPEAVEIFREMPRKGCKPD 493

Query:   269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              +T+  +I+GLC+  +   A  +  D+   G V +TV Y T+I+   + G + +ARK+  
Sbjct:   494 VYTFNSLISGLCEVDEIKHALWLLRDMISEGVVANTVTYNTLINAFLRRGEIKEARKLVN 553

Query:   329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
             EM+ +G   +E TYNS+I G CR   +++A+ L ++ML  G+  + ++ N LI GLC  G
Sbjct:   554 EMVFQGSPLDEITYNSLIKGLCRAGEVDKARSLFEKMLRDGHAPSNISCNILINGLCRSG 613

Query:   389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               +EA    +EM  +G   D++T+N+LI G C+ G+I
Sbjct:   614 MVEEAVEFQKEMVLRGSTPDIVTFNSLINGLCRAGRI 650

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2083976 MEE40 "maternal effect embryo arrest 40" [Arabidopsis thaliana (taxid:3702)]

 Score = 455 (165.2 bits), Expect = 1.8e-42, P = 1.8e-42
 Identities = 104/351 (29%), Positives = 173/351 (49%)

Query:    87 LLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFK---VAMDFLDSTGFSPNPNSLEL 143
             +LS+    W+   +G  PD    N + + LV+  + K   ++   +   G  P+ ++  +
Sbjct:   137 ILSV--VDWMIDEFGLKPDTHFYNRMLNLLVDGNSLKLVEISHAKMSVWGIKPDVSTFNV 194

Query:   144 YIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG 203
              I+ LC +  +  A      +   G+    KT+ + + G I+    D   ++   ++E G
Sbjct:   195 LIKALCRAHQLRPAILMLEDMPSYGLVPDEKTFTTVMQGYIEEGDLDGALRIREQMVEFG 254

Query:   204 ---------YLIQAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRV 253
                       ++  FC +G+V +    ++++  +DG  P+   FN L++  C+  +    
Sbjct:   255 CSWSNVSVNVIVHGFCKEGRVEDALNFIQEMSNQDGFFPDQYTFNTLVNGLCKAGHVKHA 314

Query:   254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
              E++  M+     PD +TY  VI+GLCK  +  EA  V + +  R   P+TV Y T+I  
Sbjct:   315 IEIMDVMLQEGYDPDVYTYNSVISGLCKLGEVKEAVEVLDQMITRDCSPNTVTYNTLIST 374

Query:   314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
             LCK   + +A ++   +  KG+LP+  T+NS+I G C   N   A  L +EM  KG    
Sbjct:   375 LCKENQVEEATELARVLTSKGILPDVCTFNSLIQGLCLTRNHRVAMELFEEMRSKGCEPD 434

Query:   374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
               TYN LI  LC  G+ DEA ++ ++M   G  R VITYNTLI G+CK  K
Sbjct:   435 EFTYNMLIDSLCSKGKLDEALNMLKQMELSGCARSVITYNTLIDGFCKANK 485

GO:0005739 "mitochondrion" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=RCA;IMP

GO:0009507 "chloroplast" evidence=IDA

GO:0010027 "thylakoid membrane organization" evidence=RCA

GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=RCA

GO:0016226 "iron-sulfur cluster assembly" evidence=RCA

GO:0048481 "ovule development" evidence=RCA

TAIR|locus:1009023134 AT1G12775 [Arabidopsis thaliana (taxid:3702)]

 Score = 446 (162.1 bits), Expect = 4.7e-42, P = 4.7e-42
 Identities = 97/334 (29%), Positives = 170/334 (50%)

Query:   104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
             P ++  N LF ++ + + +++ +     ++S G + +  +L + I C C    +  AF  
Sbjct:    86 PTVIDFNRLFSAIAKTKQYELVLALCKQMESKGIAHSIYTLSIMINCFCRCRKLSYAFST 145

Query:   161 FSKLKEMGVFGSIKTWNSALLG-CIK------IDRTDLVWKLYHD--LIESGYLIQAFCN 211
               K+ ++G       +N+ L G C++      ++  D + ++ H   LI    L+   C 
Sbjct:   146 MGKIMKLGYEPDTVIFNTLLNGLCLECRVSEALELVDRMVEMGHKPTLITLNTLVNGLCL 205

Query:   212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +GKVS+   L+ +++E G  P    +  +++  C+        ELL  M  RN   D   
Sbjct:   206 NGKVSDAVVLIDRMVETGFQPNEVTYGPVLNVMCKSGQTALAMELLRKMEERNIKLDAVK 265

Query:   272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
             Y  +I+GLCK      A+ +FN+++ +G+  D + Y T+I G C  G   D  K+  +MI
Sbjct:   266 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIITYNTLIGGFCNAGRWDDGAKLLRDMI 325

Query:   332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              + + PN  T++ +I  + +   L EA +L KEM+ +G    T+TYN+LI G C   R +
Sbjct:   326 KRKISPNVVTFSVLIDSFVKEGKLREADQLLKEMMQRGIAPNTITYNSLIDGFCKENRLE 385

Query:   392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             EA  + + M  KG   D++T+N LI GYCK  +I
Sbjct:   386 EAIQMVDLMISKGCDPDIMTFNILINGYCKANRI 419

GO:0005739 "mitochondrion" evidence=ISM

TAIR|locus:2077061 AT3G22470 "AT3G22470" [Arabidopsis thaliana (taxid:3702)]

 Score = 444 (161.4 bits), Expect = 6.6e-42, P = 6.6e-42
 Identities = 102/334 (30%), Positives = 175/334 (52%)

Query:   104 PDLVSCNVLFDSL-VEARAFK--VAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
             PDLV+ + L + L ++ R  +  V +D +   GF P+  +    +  LC+SG    A   
Sbjct:   173 PDLVTVSTLINGLCLKGRVSEALVLIDRMVEYGFQPDEVTYGPVLNRLCKSGNSALALDL 232

Query:   161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------Y--LIQAFCN 211
             F K++E  +  S+  ++  +    K    D    L++++   G       Y  LI   CN
Sbjct:   233 FRKMEERNIKASVVQYSIVIDSLCKDGSFDDALSLFNEMEMKGIKADVVTYSSLIGGLCN 292

Query:   212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             DGK  +G ++LR+++   ++P+   F+ LI  F ++       EL + M+ R  APD  T
Sbjct:   293 DGKWDDGAKMLREMIGRNIIPDVVTFSALIDVFVKEGKLLEAKELYNEMITRGIAPDTIT 352

Query:   272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
             Y  +I+G CK     EA ++F+ +  +G  PD V Y+ +I+  CK   + D  +++ E+ 
Sbjct:   353 YNSLIDGFCKENCLHEANQMFDLMVSKGCEPDIVTYSILINSYCKAKRVDDGMRLFREIS 412

Query:   332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              KGL+PN  TYN+++ G+C+   L  AK L +EM+ +G   + VTY  L+ GLC +G  +
Sbjct:   413 SKGLIPNTITYNTLVLGFCQSGKLNAAKELFQEMVSRGVPPSVVTYGILLDGLCDNGELN 472

Query:   392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +A  +FE+M +  +   +  YN +I G C   K+
Sbjct:   473 KALEIFEKMQKSRMTLGIGIYNIIIHGMCNASKV 506

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2015228 AT1G63080 [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 7.5e-41, P = 7.5e-41
 Identities = 100/337 (29%), Positives = 177/337 (52%)

Query:   101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
             G  PDLV+   + + L +     +A++ L+          + +Y   I  LC+   +++A
Sbjct:   200 GCQPDLVTYGAVINGLCKRGEPDLALNLLNKMEKGKIEADVVIYSTVIDSLCKYRHVDDA 259

Query:   158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
                F+++   G+   + T++S L+ C+    R     +L  D++E            LI 
Sbjct:   260 LNLFTEMDNKGIRPDVFTYSS-LISCLCNYGRWSDASRLLSDMLERKINPNVVTFNSLID 318

Query:   208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             AF  +GK+ E  +L  ++++  + P    +N LI+ FC         ++   MV+++  P
Sbjct:   319 AFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFTLMVSKDCLP 378

Query:   268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             D  TY  +ING CK++K ++   +F D+  RG V +TV YTT+IHG  +     +A+ ++
Sbjct:   379 DVVTYNTLINGFCKAKKVVDGMELFRDMSRRGLVGNTVTYTTLIHGFFQASDCDNAQMVF 438

Query:   328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCL 386
              +M+  G+ PN  TYN+++ G C+   LE+A  +  E L K   E  + TYN +  G+C 
Sbjct:   439 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQKSKMEPDIYTYNIMSEGMCK 497

Query:   387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              G+ ++ + LF  ++ KG+  DVI YNT+I G+CK+G
Sbjct:   498 AGKVEDGWDLFCSLSLKGVKPDVIAYNTMISGFCKKG 534

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2195047 AT1G12620 [Arabidopsis thaliana (taxid:3702)]

 Score = 430 (156.4 bits), Expect = 2.3e-40, P = 2.3e-40
 Identities = 96/334 (28%), Positives = 168/334 (50%)

Query:   104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
             P L+  + LF  +   + + + +D    ++  G + N  +L + I C C    +  AF A
Sbjct:    70 PRLIDFSRLFSVVARTKQYDLVLDLCKQMELKGIAHNLYTLSIMINCCCRCRKLSLAFSA 129

Query:   161 FSKLKEMGVFGSIKTWNSALLG-CIK------IDRTDLVWKLYHD--LIESGYLIQAFCN 211
               K+ ++G      T+++ + G C++      ++  D + ++ H   LI    L+   C 
Sbjct:   130 MGKIIKLGYEPDTVTFSTLINGLCLEGRVSEALELVDRMVEMGHKPTLITLNALVNGLCL 189

Query:   212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
             +GKVS+   L+ +++E G  P    +  ++   C+        ELL  M  R    D   
Sbjct:   190 NGKVSDAVLLIDRMVETGFQPNEVTYGPVLKVMCKSGQTALAMELLRKMEERKIKLDAVK 249

Query:   272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
             Y  +I+GLCK      A+ +FN+++ +G+  D ++YTT+I G C  G   D  K+  +MI
Sbjct:   250 YSIIIDGLCKDGSLDNAFNLFNEMEIKGFKADIIIYTTLIRGFCYAGRWDDGAKLLRDMI 309

Query:   332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              + + P+   ++++I  + +   L EA+ LHKEM+ +G    TVTY +LI G C   + D
Sbjct:   310 KRKITPDVVAFSALIDCFVKEGKLREAEELHKEMIQRGISPDTVTYTSLIDGFCKENQLD 369

Query:   392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
             +A H+ + M  KG   ++ T+N LI GYCK   I
Sbjct:   370 KANHMLDLMVSKGCGPNIRTFNILINGYCKANLI 403

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2155730 AT5G65560 "AT5G65560" [Arabidopsis thaliana (taxid:3702)]

 Score = 436 (158.5 bits), Expect = 4.5e-40, P = 4.5e-40
 Identities = 109/336 (32%), Positives = 170/336 (50%)

Query:   104 PDLVSCNVLFDSLVEARAFKVAMDF---LDSTGFSPNPNSLELYIQCLCESGLIEEAFCA 160
             P + +  VL  SL  +     A++    ++ TG  PN ++  + I  LC     E+A   
Sbjct:   321 PTVRTYTVLIKSLCGSERKSEALNLVKEMEETGIKPNIHTYTVLIDSLCSQCKFEKAREL 380

Query:   161 FSKLKEMGVFGSIKTWNSALLGCIKI----DRTDLVW-----KLYHDLIESGYLIQAFCN 211
               ++ E G+  ++ T+N+ + G  K     D  D+V      KL  +      LI+ +C 
Sbjct:   381 LGQMLEKGLMPNVITYNALINGYCKRGMIEDAVDVVELMESRKLSPNTRTYNELIKGYCK 440

Query:   212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT 271
                V +   +L ++LE  ++P+   +N LI   C   NF     LL  M  R   PD +T
Sbjct:   441 SN-VHKAMGVLNKMLERKVLPDVVTYNSLIDGQCRSGNFDSAYRLLSLMNDRGLVPDQWT 499

Query:   272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI 331
             Y  +I+ LCKS++  EA  +F+ L+++G  P+ VMYT +I G CK G + +A  M  +M+
Sbjct:   500 YTSMIDSLCKSKRVEEACDLFDSLEQKGVNPNVVMYTALIDGYCKAGKVDEAHLMLEKML 559

Query:   332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD 391
              K  LPN  T+N++IHG C    L+EA  L ++M+  G   T  T   LI  L   G  D
Sbjct:   560 SKNCLPNSLTFNALIHGLCADGKLKEATLLEEKMVKIGLQPTVSTDTILIHRLLKDGDFD 619

Query:   392 EAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
              AY  F++M   G   D  TY T IQ YC+EG++++
Sbjct:   620 HAYSRFQQMLSSGTKPDAHTYTTFIQTYCREGRLLD 655

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2026192 RPF2 "rna processing factor 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 423 (154.0 bits), Expect = 1.9e-39, P = 1.9e-39
 Identities = 98/337 (29%), Positives = 166/337 (49%)

Query:   101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIEEA 157
             G+ P++V+ + L +    ++    A+  +D    TG+ PN  +    I  L       EA
Sbjct:   146 GYEPNIVTLSSLLNGYCHSKRISEAVALVDQMFVTGYQPNTVTFNTLIHGLFLHNKASEA 205

Query:   158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL----IESGYLI-----QA 208
                  ++   G    + T+   + G  K   TDL + L + +    +E G LI       
Sbjct:   206 MALIDRMVAKGCQPDLVTYGVVVNGLCKRGDTDLAFNLLNKMEQGKLEPGVLIYNTIIDG 265

Query:   209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD 268
              C    + +   L +++   G+ P    ++ LIS  C    +   S LL  M+ R   PD
Sbjct:   266 LCKYKHMDDALNLFKEMETKGIRPNVVTYSSLISCLCNYGRWSDASRLLSDMIERKINPD 325

Query:   269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF 328
              FT+  +I+   K  K +EA ++++++ +R   P  V Y+++I+G C    L +A++M+ 
Sbjct:   326 VFTFSALIDAFVKEGKLVEAEKLYDEMVKRSIDPSIVTYSSLINGFCMHDRLDEAKQMFE 385

Query:   329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG 388
              M+ K   P+  TYN++I G+C+   +EE   + +EM  +G    TVTYN LI GL   G
Sbjct:   386 FMVSKHCFPDVVTYNTLIKGFCKYKRVEEGMEVFREMSQRGLVGNTVTYNILIQGLFQAG 445

Query:   389 RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
               D A  +F+EM   G+  +++TYNTL+ G CK GK+
Sbjct:   446 DCDMAQEIFKEMVSDGVPPNIMTYNTLLDGLCKNGKL 482

GO:0005739 "mitochondrion" evidence=ISM;IDA

GO:0000966 "RNA 5'-end processing" evidence=IMP

GO:0003723 "RNA binding" evidence=IDA

TAIR|locus:2031301 AT1G63400 [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 98/337 (29%), Positives = 183/337 (54%)

Query:   101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELY---IQCLCESGLIEEA 157
             G  P+LV+  V+ + L +     +A + L+    +    ++ +Y   I  LC+    ++A
Sbjct:   220 GCQPNLVTYGVVVNGLCKRGDIDLAFNLLNKMEAAKIEANVVIYSTVIDSLCKYRHEDDA 279

Query:   158 FCAFSKLKEMGVFGSIKTWNSALLGCI-KIDRTDLVWKLYHDLIES---------GYLIQ 207
                F++++  GV  ++ T++S L+ C+   +R     +L  D+IE            LI 
Sbjct:   280 LNLFTEMENKGVRPNVITYSS-LISCLCNYERWSDASRLLSDMIERKINPNVVTFNALID 338

Query:   208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP 267
             AF  +GK+ E  +L  ++++  + P+   ++ LI+ FC          +   M++++  P
Sbjct:   339 AFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFELMISKDCFP 398

Query:   268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW 327
             +  TY  +ING CK+++  E   +F ++ +RG V +TV YTT+IHG  +     +A+ ++
Sbjct:   399 NVVTYNTLINGFCKAKRIDEGVELFREMSQRGLVGNTVTYTTLIHGFFQARDCDNAQMVF 458

Query:   328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTLIAGLCL 386
              +M+  G+ PN  TYN+++ G C+   LE+A  +  E L +   E T+ TYN +I G+C 
Sbjct:   459 KQMVSDGVHPNIMTYNTLLDGLCKNGKLEKAMVVF-EYLQRSKMEPTIYTYNIMIEGMCK 517

Query:   387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
              G+ ++ + LF  ++ KG+  DVI YNT+I G+C++G
Sbjct:   518 AGKVEDGWDLFCSLSLKGVKPDVIIYNTMISGFCRKG 554

GO:0005739 "mitochondrion" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GYM2	PP393_ARATH	No assigned EC number	0.4807	0.9906	0.8757	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_601971.1 annotation not avaliable (483 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	427
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	3e-18
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-17
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-16
pfam13041	50	pfam13041, PPR_2, PPR repeat family	5e-14
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-13
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	8e-13
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-12
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	1e-10
pfam12854	34	pfam12854, PPR_1, PPR repeat	1e-09
pfam12854	34	pfam12854, PPR_1, PPR repeat	2e-09
PLN03081	697	PLN03081, PLN03081, pentatricopeptide (PPR) repeat	6e-09
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	2e-08
pfam01535	31	pfam01535, PPR, PPR repeat	1e-07
pfam13041	50	pfam13041, PPR_2, PPR repeat family	2e-07
pfam01535	31	pfam01535, PPR, PPR repeat	2e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	4e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	4e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	5e-07
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	8e-07
pfam12854	34	pfam12854, PPR_1, PPR repeat	8e-07
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	2e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	5e-06
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	6e-06
PLN03218	1060	PLN03218, PLN03218, maturation of RBCL 1; Provisio	9e-06
pfam01535	31	pfam01535, PPR, PPR repeat	2e-05
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	6e-05
pfam13041	50	pfam13041, PPR_2, PPR repeat family	1e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	2e-04
TIGR00756	35	TIGR00756, PPR, pentatricopeptide repeat domain (P	3e-04
PLN03077	857	PLN03077, PLN03077, Protein ECB2; Provisional	8e-04
pfam13812	34	pfam13812, PPR_3, Pentatricopeptide repeat domain	0.003
pfam13041	50	pfam13041, PPR_2, PPR repeat family	0.004

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 86.8 bits (215), Expect = 3e-18
 Identities = 72/324 (22%), Positives = 140/324 (43%), Gaps = 55/324 (16%)

Query: 113 FDSLVEA-------RAFKVAMDFLDSTGFSPNPNS----LELYIQCLCESGLIEEAFCAF 161
           +D+LVEA       R  K     ++S+GF P+       L ++++C    G++ +A   F
Sbjct: 126 YDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC----GMLIDARRLF 181

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL 221
            ++ E  +     +W +                          +I    + G   E + L
Sbjct: 182 DEMPERNLA----SWGT--------------------------IIGGLVDAGNYREAFAL 211

Query: 222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN-FTYEEVINGLC 280
            R++ EDG   E   F  ++ R        R  + LH  V +     + F    +I+   
Sbjct: 212 FREMWEDGSDAEPRTFVVML-RASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYS 270

Query: 281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY 340
           K     +A  VF+ + E+     TV + +++ G    G+  +A  +++EM   G+  +++
Sbjct: 271 KCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF 326

Query: 341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
           T++ MI  + R+  LE AK+ H  ++  G+    V    L+      GR ++A ++F+ M
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386

Query: 401 AQKGIFRDVITYNTLIQGYCKEGK 424
            +    +++I++N LI GY   G+
Sbjct: 387 PR----KNLISWNALIAGYGNHGR 406

Length = 697

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 75.5 bits (187), Expect = 2e-17
 Identities = 26/48 (54%), Positives = 32/48 (66%)

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK 421
            VTYNTLI G C  G+ +EA  LF EM ++GI  +V TY+ LI G CK
Sbjct: 3   VVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 72.4 bits (179), Expect = 2e-16
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR 351
           PD V Y T+I G CK G + +A K++ EM  +G+ PN YTY+ +I G C+
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 65.9 bits (162), Expect = 5e-14
 Identities = 22/49 (44%), Positives = 30/49 (61%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC 385
           P+  TYN++I GYC+   +EEA +L  EM  +G      TY+ LI GLC
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 64.3 bits (158), Expect = 2e-13
 Identities = 23/50 (46%), Positives = 33/50 (66%)

Query: 267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK 316
           PD  TY  +I+G CK  K  EA ++FN++K+RG  P+   Y+ +I GLCK
Sbjct: 1   PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 69.9 bits (171), Expect = 8e-13
 Identities = 42/201 (20%), Positives = 93/201 (46%), Gaps = 8/201 (3%)

Query: 225 VLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK 284
           V   G  P+    N+++    +         L   M  RN      ++  +I GL  +  
Sbjct: 149 VESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERN----LASWGTIIGGLVDAGN 204

Query: 285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS 344
             EA+ +F ++ E G   +   +  ++     +G     +++   ++  G++ + +   +
Sbjct: 205 YREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCA 264

Query: 345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG 404
           +I  Y +  ++E+A+ +   M +K    TTV +N+++AG  LHG ++EA  L+ EM   G
Sbjct: 265 LIDMYSKCGDIEDARCVFDGMPEK----TTVAWNSMLAGYALHGYSEEALCLYYEMRDSG 320

Query: 405 IFRDVITYNTLIQGYCKEGKI 425
           +  D  T++ +I+ + +   +
Sbjct: 321 VSIDQFTFSIMIRIFSRLALL 341

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 69.1 bits (169), Expect = 2e-12
 Identities = 60/290 (20%), Positives = 124/290 (42%), Gaps = 18/290 (6%)

Query: 149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---- 204
             S  I+ A      ++E G+    K + + +  C K  + D +++++H+++ +G     
Sbjct: 448 ASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANV 507

Query: 205 -----LIQAFCNDGKVSE---GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL 256
                LI      G+V++    Y ++R      + P+   FN LIS   +     R  ++
Sbjct: 508 HTFGALIDGCARAGQVAKAFGAYGIMRS---KNVKPDRVVFNALISACGQSGAVDRAFDV 564

Query: 257 LHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL 314
           L  M A      PD+ T   ++     + +   A  V+  + E        +YT  ++  
Sbjct: 565 LAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSC 624

Query: 315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT 374
            + G    A  ++ +M  KG+ P+E  +++++       +L++A  + ++   +G    T
Sbjct: 625 SQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           V+Y++L+          +A  L+E++    +   V T N LI   C EG 
Sbjct: 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC-EGN 733

Length = 1060

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 53/227 (23%), Positives = 96/227 (42%), Gaps = 21/227 (9%)

Query: 206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR 265
           ++A C+ G++ +  +LL  + E  +  +  A+  L  R CE K   R  E    + +R  
Sbjct: 58  LRALCSHGQLEQALKLLESMQELRVPVDEDAYVALF-RLCEWK---RAVEEGSRVCSRAL 113

Query: 266 APDNFTYEEVINGLCKSRKRL----EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG 321
           +        + N +     R      A+ VF  + ER    D   +  ++ G  K G+  
Sbjct: 114 SSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPER----DLFSWNVLVGGYAKAGYFD 169

Query: 322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI 381
           +A  ++  M+  G+ P+ YT+  ++     I +L   + +H  ++  G+       N LI
Sbjct: 170 EALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALI 229

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY-----CKEG 423
                 G    A  +F+ M +    RD I++N +I GY     C EG
Sbjct: 230 TMYVKCGDVVSARLVFDRMPR----RDCISWNAMISGYFENGECLEG 272

Length = 857

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.7 bits (128), Expect = 1e-09
 Identities = 16/33 (48%), Positives = 21/33 (63%)

Query: 333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           KGL P+  TYN++I G CR   ++EA  L  EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 52.4 bits (127), Expect = 2e-09
 Identities = 18/28 (64%), Positives = 19/28 (67%)

Query: 373 TTVTYNTLIAGLCLHGRTDEAYHLFEEM 400
             VTYNTLI GLC  GR DEA  L +EM
Sbjct: 6   DVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 45/213 (21%), Positives = 78/213 (36%), Gaps = 47/213 (22%)

Query: 250 FGRVSELLHTM-VARNRAP---DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV 305
            GR  E L    +     P      TY+ ++      +       V+  ++  G+ PD  
Sbjct: 100 CGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQY 159

Query: 306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
           M   V+    K G L DAR+++ EM  +    N  ++ ++I G     N  EA  L +EM
Sbjct: 160 MMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFALFREM 215

Query: 366 LDKGYGETTVTYNTLI----------AGLCLH-------------------------GRT 390
            + G      T+  ++          AG  LH                         G  
Sbjct: 216 WEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDI 275

Query: 391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG 423
           ++A  +F+ M +K      + +N+++ GY   G
Sbjct: 276 EDARCVFDGMPEK----TTVAWNSMLAGYALHG 304

Length = 697

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 56.4 bits (136), Expect = 2e-08
 Identities = 46/200 (23%), Positives = 77/200 (38%), Gaps = 39/200 (19%)

Query: 230 LVPENT--AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE 287
           L+   T   FN L+S     ++                          I+G         
Sbjct: 431 LIRNPTLSTFNMLMSVCASSQD--------------------------IDG--------- 455

Query: 288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH 347
           A RV   ++E G   D  +YTT+I    K G +    +++ EM++ G+  N +T+ ++I 
Sbjct: 456 ALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALID 515

Query: 348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA--QKGI 405
           G  R   + +A   +  M  K      V +N LI+     G  D A+ +  EM      I
Sbjct: 516 GCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPI 575

Query: 406 FRDVITYNTLIQGYCKEGKI 425
             D IT   L++     G++
Sbjct: 576 DPDHITVGALMKACANAGQV 595

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 47.1 bits (113), Expect = 1e-07
 Identities = 18/30 (60%), Positives = 21/30 (70%)

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
            TYNS+I GYC+   LEEA  L KEM +KG
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKG 30

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 47.0 bits (113), Expect = 2e-07
 Identities = 16/46 (34%), Positives = 25/46 (54%)

Query: 236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK 281
            +N LI  +C+K       +L + M  R   P+ +TY  +I+GLCK
Sbjct: 5   TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 46.7 bits (112), Expect = 2e-07
 Identities = 17/31 (54%), Positives = 24/31 (77%)

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
           VTYN+LI+G C  G+ +EA  LF+EM +KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 46.3 bits (111), Expect = 3e-07
 Identities = 22/35 (62%), Positives = 26/35 (74%)

Query: 375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV 409
           VTYNTLI GLC  GR +EA  LF+EM ++GI  DV
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 52.2 bits (125), Expect = 4e-07
 Identities = 45/229 (19%), Positives = 91/229 (39%), Gaps = 9/229 (3%)

Query: 198 DLIESGYLIQAFCNDGKVS---EGYELLRQVLEDGLVPENTAFNKLISRFCEKK-NFGRV 253
           D I  G L++A  N G+V    E Y+++ +    G     T         C +K ++   
Sbjct: 578 DHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTI----AVNSCSQKGDWDFA 633

Query: 254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG 313
             +   M  +   PD   +  +++    +    +A+ +  D +++G    TV Y++++  
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693

Query: 314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET 373
                    A +++ ++    L P   T N++I   C  + L +A  +  EM   G    
Sbjct: 694 CSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPN 753

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE 422
           T+TY+ L+         D    L  +  + GI  +++    +  G C  
Sbjct: 754 TITYSILLVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCIT-GLCLR 801

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.8 bits (110), Expect = 4e-07
 Identities = 14/33 (42%), Positives = 21/33 (63%)

Query: 298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM 330
           +G  PD V Y T+I GLC+ G + +A ++  EM
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 45.5 bits (109), Expect = 5e-07
 Identities = 14/31 (45%), Positives = 20/31 (64%)

Query: 340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY 370
            TYN++I G C+   +EEA  L KEM ++G 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 51.0 bits (122), Expect = 8e-07
 Identities = 45/213 (21%), Positives = 94/213 (44%), Gaps = 9/213 (4%)

Query: 210 CNDGKVSEG-YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS---ELLHTMVARNR 265
           C   +  +G   +LR V E GL  +   +  LIS  C K   G+V    E+ H MV    
Sbjct: 447 CASSQDIDGALRVLRLVQEAGLKADCKLYTTLIST-CAKS--GKVDAMFEVFHEMVNAGV 503

Query: 266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARK 325
             +  T+  +I+G  ++ +  +A+  +  ++ +   PD V++  +I    + G +  A  
Sbjct: 504 EANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFD 563

Query: 326 MWFEMIH--KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG 383
           +  EM      + P+  T  +++        ++ AK +++ + +     T   Y   +  
Sbjct: 564 VLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNS 623

Query: 384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
               G  D A  ++++M +KG+  D + ++ L+
Sbjct: 624 CSQKGDWDFALSIYDDMKKKGVKPDEVFFSALV 656

Length = 1060

>gnl|CDD|205109 pfam12854, PPR_1, PPR repeat

 Score = 45.0 bits (108), Expect = 8e-07
 Identities = 13/23 (56%), Positives = 18/23 (78%)

Query: 403 KGIFRDVITYNTLIQGYCKEGKI 425
           KG+  DV+TYNTLI G C+ G++
Sbjct: 1   KGLKPDVVTYNTLIDGLCRAGRV 23

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 43.6 bits (104), Expect = 2e-06
 Identities = 14/35 (40%), Positives = 23/35 (65%)

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE 339
           V Y T+I GLCK G + +A +++ EM  +G+ P+ 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 48.7 bits (116), Expect = 5e-06
 Identities = 64/310 (20%), Positives = 121/310 (39%), Gaps = 36/310 (11%)

Query: 132 TGFSPNP---NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR 188
           TGF+ +    NSL   IQ     G   EA   FS+++         +W + + G  K   
Sbjct: 317 TGFAVDVSVCNSL---IQMYLSLGSWGEAEKVFSRME----TKDAVSWTAMISGYEKNGL 369

Query: 189 TDLVWKLYH---------DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK 239
            D   + Y          D I    ++ A    G +  G +L       GL+      N 
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANA 429

Query: 240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG 299
           LI  + + K   +  E+ H +  ++      ++  +I GL  + +  EA   F  +    
Sbjct: 430 LIEMYSKCKCIDKALEVFHNIPEKDV----ISWTSIIAGLRLNNRCFEALIFFRQMLLT- 484

Query: 300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK 359
             P++V     +    ++G L   +++   ++  G+  + +  N+++  Y R   +  A 
Sbjct: 485 LKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAW 544

Query: 360 R---LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI 416
                H++          V++N L+ G   HG+   A  LF  M + G+  D +T+ +L+
Sbjct: 545 NQFNSHEK--------DVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596

Query: 417 QGYCKEGKIV 426
              C    +V
Sbjct: 597 CA-CSRSGMV 605

Length = 857

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 48.3 bits (115), Expect = 6e-06
 Identities = 66/312 (21%), Positives = 117/312 (37%), Gaps = 50/312 (16%)

Query: 150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC----------------------IKID 187
           ++G  +EA C + ++   GV   + T+   L  C                      + +D
Sbjct: 164 KAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVD 223

Query: 188 RTDLVWKLY------------------HDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG 229
             + +  +Y                   D I    +I  +  +G+  EG EL   + E  
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELS 283

Query: 230 LVPENTAFNKLISRFCEKKNFGRVSELLHT-MVARNRAPDNFTYEEVINGLCKSRKRLEA 288
           + P+      +IS  CE     R+   +H  +V    A D      +I          EA
Sbjct: 284 VDPDLMTITSVISA-CELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEA 342

Query: 289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
            +VF+ ++ +    D V +T +I G  K G    A + +  M    + P+E T  S++  
Sbjct: 343 EKVFSRMETK----DAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSA 398

Query: 349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD 408
              + +L+   +LH+    KG     V  N LI         D+A  +F  + +K    D
Sbjct: 399 CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEK----D 454

Query: 409 VITYNTLIQGYC 420
           VI++ ++I G  
Sbjct: 455 VISWTSIIAGLR 466

Length = 857

>gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional

 Score = 47.6 bits (113), Expect = 9e-06
 Identities = 47/260 (18%), Positives = 96/260 (36%), Gaps = 56/260 (21%)

Query: 111 VLFDSLVEA--------RAFKVAMDF-LDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF 161
           V+F++L+ A        RAF V  +   ++    P+  ++   ++    +G ++ A   +
Sbjct: 543 VVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602

Query: 162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------LIQAFCND 212
             + E  + G+ + +  A+  C +    D    +Y D+ + G          L+    + 
Sbjct: 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHA 662

Query: 213 GKVSEGYELLR-------------------------------QVLED----GLVPENTAF 237
           G + + +E+L+                               ++ ED     L P  +  
Sbjct: 663 GDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTM 722

Query: 238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVFNDLK 296
           N LI+  CE     +  E+L  M      P+  TY  ++    + +   +    + +  K
Sbjct: 723 NALITALCEGNQLPKALEVLSEMKRLGLCPNTITY-SILLVASERKDDADVGLDLLSQAK 781

Query: 297 ERGYVPDTVMYTTVIHGLCK 316
           E G  P+ VM   +  GLC 
Sbjct: 782 EDGIKPNLVMCRCIT-GLCL 800

Length = 1060

>gnl|CDD|144943 pfam01535, PPR, PPR repeat

 Score = 40.5 bits (96), Expect = 2e-05
 Identities = 13/31 (41%), Positives = 20/31 (64%)

Query: 305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGL 335
           V Y ++I G CK G L +A +++ EM  KG+
Sbjct: 1   VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31

This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 39.5 bits (93), Expect = 6e-05
 Identities = 12/32 (37%), Positives = 15/32 (46%)

Query: 374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI 405
             TYN L+  L   G  D A  + EEM   G+
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASGL 32

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 38.9 bits (92), Expect = 1e-04
 Identities = 14/18 (77%), Positives = 17/18 (94%)

Query: 408 DVITYNTLIQGYCKEGKI 425
           DV+TYNTLI GYCK+GK+
Sbjct: 2   DVVTYNTLIDGYCKKGKV 19

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 43.7 bits (103), Expect = 2e-04
 Identities = 62/272 (22%), Positives = 116/272 (42%), Gaps = 27/272 (9%)

Query: 152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------- 204
           G +  A+  F K+ E  +F    +WN  + G  K    D    LYH ++ +G        
Sbjct: 135 GELVHAWYVFGKMPERDLF----SWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTF 190

Query: 205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA 262
             +++       ++ G E+   V+  G   +    N LI+ + +  +      +   M  
Sbjct: 191 PCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR 250

Query: 263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           R    D  ++  +I+G  ++ + LE   +F  ++E    PD +  T+VI   C++  LGD
Sbjct: 251 R----DCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISA-CEL--LGD 303

Query: 323 ---ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNT 379
               R+M   ++  G   +    NS+I  Y  + +  EA+++   M  K      V++  
Sbjct: 304 ERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETK----DAVSWTA 359

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT 411
           +I+G   +G  D+A   +  M Q  +  D IT
Sbjct: 360 MISGYEKNGLPDKALETYALMEQDNVSPDEIT 391

Length = 857

>gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif)

 Score = 37.8 bits (89), Expect = 3e-04
 Identities = 16/35 (45%), Positives = 23/35 (65%)

Query: 270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT 304
            TY  +I+GLCK+ +  EA  +F ++KERG  PD 
Sbjct: 1   VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35

This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35

>gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional

 Score = 41.4 bits (97), Expect = 8e-04
 Identities = 39/179 (21%), Positives = 72/179 (40%), Gaps = 13/179 (7%)

Query: 235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND 294
            ++N L++ +          EL + MV     PD  T+  ++    +S    +    F+ 
Sbjct: 555 VSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHS 614

Query: 295 LKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID 353
           ++E+    P+   Y  V+  L + G L +A     +M      P+   + ++++  CRI 
Sbjct: 615 MEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPIT---PDPAVWGALLNA-CRIH 670

Query: 354 ---NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH-GRTDEAYHLFEEMAQKGIFRD 408
               L E    H   LD      +V Y  L+  L    G+ DE   + + M + G+  D
Sbjct: 671 RHVELGELAAQHIFELDPN----SVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVD 725

Length = 857

>gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 7/31 (22%), Positives = 15/31 (48%)

Query: 339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
             TYN+++    +  + + A  + +EM   G
Sbjct: 1   LETYNALLLALAKAGDPDLALAVLEEMKASG 31

This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34

>gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family

 Score = 34.7 bits (81), Expect = 0.004
 Identities = 13/41 (31%), Positives = 21/41 (51%)

Query: 205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC 245
           LI  +C  GKV E  +L  ++ + G+ P    ++ LI   C
Sbjct: 9   LIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49

This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	427
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03218	1060	maturation of RBCL 1; Provisional	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03081	697	pentatricopeptide (PPR) repeat-containing protein;	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
PLN03077	857	Protein ECB2; Provisional	100.0
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.93
TIGR02917	899	PEP_TPR_lipo putative PEP-CTERM system TPR-repeat	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.91
PRK11788	389	tetratricopeptide repeat protein; Provisional	99.89
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.85
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.82
PRK15174	656	Vi polysaccharide export protein VexE; Provisional	99.81
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.79
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
KOG4626	966	consensus O-linked N-acetylglucosamine transferase	99.78
TIGR00990	615	3a0801s09 mitochondrial precursor proteins import	99.77
PRK11447	1157	cellulose synthase subunit BcsC; Provisional	99.75
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.73
PRK14574	822	hmsH outer membrane protein; Provisional	99.66
PRK10049	765	pgaA outer membrane protein PgaA; Provisional	99.66
PRK14574	822	hmsH outer membrane protein; Provisional	99.66
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.62
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.6
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.6
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.6
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.6
KOG4422	625	consensus Uncharacterized conserved protein [Funct	99.59
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.57
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.57
KOG2076	895	consensus RNA polymerase III transcription factor	99.57
PRK10747	398	putative protoheme IX biogenesis protein; Provisio	99.54
PF13429	280	TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2	99.54
PRK09782	987	bacteriophage N4 receptor, outer membrane subunit;	99.54
TIGR00540	409	hemY_coli hemY protein. This is an uncharacterized	99.52
COG2956	389	Predicted N-acetylglucosaminyl transferase [Carboh	99.51
PF13041	50	PPR_2: PPR repeat family	99.48
KOG1126	638	consensus DNA-binding cell division cycle control	99.47
KOG1126	638	consensus DNA-binding cell division cycle control	99.47
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.46
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.46
KOG2002	1018	consensus TPR-containing nuclear phosphoprotein th	99.44
KOG2003	840	consensus TPR repeat-containing protein [General f	99.41
PF13041	50	PPR_2: PPR repeat family	99.41
KOG2076	895	consensus RNA polymerase III transcription factor	99.4
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.36
COG3071	400	HemY Uncharacterized enzyme of heme biosynthesis [	99.36
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.35
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.35
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.34
KOG1155	559	consensus Anaphase-promoting complex (APC), Cdc23	99.34
TIGR02521	234	type_IV_pilW type IV pilus biogenesis/stability pr	99.32
PRK12370	553	invasion protein regulator; Provisional	99.32
KOG1129	478	consensus TPR repeat-containing protein [General f	99.32
KOG4318	1088	consensus Bicoid mRNA stability factor [RNA proces	99.3
PRK12370	553	invasion protein regulator; Provisional	99.3
KOG1129	478	consensus TPR repeat-containing protein [General f	99.29
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.27
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.25
KOG2003	840	consensus TPR repeat-containing protein [General f	99.24
KOG0495	913	consensus HAT repeat protein [RNA processing and m	99.23
KOG1840	508	consensus Kinesin light chain [Cytoskeleton]	99.23
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.22
KOG0547	606	consensus Translocase of outer mitochondrial membr	99.19
KOG1915	677	consensus Cell cycle control protein (crooked neck	99.18
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.16
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.11
COG3063	250	PilF Tfp pilus assembly protein PilF [Cell motilit	99.06
PF12569	517	NARP1: NMDA receptor-regulated protein 1 ; InterPr	99.05
KOG1173	611	consensus Anaphase-promoting complex (APC), Cdc16	99.02
PRK11189	296	lipoprotein NlpI; Provisional	99.02
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.98
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.97
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.93
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.91
PRK11189	296	lipoprotein NlpI; Provisional	98.9
PF12854	34	PPR_1: PPR repeat	98.86
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.82
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.8
PF12854	34	PPR_1: PPR repeat	98.78
PF04733	290	Coatomer_E: Coatomer epsilon subunit; InterPro: IP	98.78
KOG1174	564	consensus Anaphase-promoting complex (APC), subuni	98.77
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.75
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.74
cd05804	355	StaR_like StaR_like; a well-conserved protein foun	98.73
KOG2047	835	consensus mRNA splicing factor [RNA processing and	98.73
KOG1125	579	consensus TPR repeat-containing protein [General f	98.7
KOG4340	459	consensus Uncharacterized conserved protein [Funct	98.7
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.68
KOG1128	777	consensus Uncharacterized conserved protein, conta	98.65
KOG1156	700	consensus N-terminal acetyltransferase [Chromatin	98.65
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.64
KOG1125	579	consensus TPR repeat-containing protein [General f	98.63
PLN02789	320	farnesyltranstransferase	98.62
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.61
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.61
PRK04841	903	transcriptional regulator MalT; Provisional	98.61
KOG1070	1710	consensus rRNA processing protein Rrp5 [RNA proces	98.6
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.56
PRK10370	198	formate-dependent nitrite reductase complex subuni	98.56
KOG2376	652	consensus Signal recognition particle, subunit Srp	98.55
KOG3785	557	consensus Uncharacterized conserved protein [Funct	98.54
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.53
PLN02789	320	farnesyltranstransferase	98.53
PRK04841	903	transcriptional regulator MalT; Provisional	98.51
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.49
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	98.48
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.47
TIGR03302	235	OM_YfiO outer membrane assembly lipoprotein YfiO.	98.45
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.45
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.43
KOG1914	656	consensus mRNA cleavage and polyadenylation factor	98.43
KOG3617	1416	consensus WD40 and TPR repeat-containing protein [	98.43
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.4
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.38
KOG3616	1636	consensus Selective LIM binding factor [Transcript	98.36
COG5010	257	TadD Flp pilus assembly protein TadD, contains TPR	98.35
KOG0985	1666	consensus Vesicle coat protein clathrin, heavy cha	98.33
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.32
PRK15359	144	type III secretion system chaperone protein SscB;	98.3
KOG3081	299	consensus Vesicle coat complex COPI, epsilon subun	98.27
PRK15359	144	type III secretion system chaperone protein SscB;	98.26
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.25
PRK14720	906	transcript cleavage factor/unknown domain fusion p	98.25
KOG4162	799	consensus Predicted calmodulin-binding protein [Si	98.24
TIGR00756	35	PPR pentatricopeptide repeat domain (PPR motif). T	98.23
PRK15179	694	Vi polysaccharide biosynthesis protein TviE; Provi	98.23
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.22
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.21
KOG0624	504	consensus dsRNA-activated protein kinase inhibitor	98.21
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.17
PF10037	429	MRP-S27: Mitochondrial 28S ribosomal protein S27;	98.17
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.15
PF13812	34	PPR_3: Pentatricopeptide repeat domain	98.15
TIGR02552	135	LcrH_SycD type III secretion low calcium response	98.14
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	98.1
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	98.09
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.08
COG4783	484	Putative Zn-dependent protease, contains TPR repea	98.08
PF08579	120	RPM2: Mitochondrial ribonuclease P subunit (RPM2);	98.07
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	98.03
PF09295	395	ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter	98.01
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.99
PF09976	145	TPR_21: Tetratricopeptide repeat; InterPro: IPR018	97.97
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.92
PF01535	31	PPR: PPR repeat; InterPro: IPR002885 This entry re	97.89
KOG0548	539	consensus Molecular co-chaperone STI1 [Posttransla	97.87
KOG3060	289	consensus Uncharacterized conserved protein [Funct	97.86
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.86
KOG1127	1238	consensus TPR repeat-containing protein [RNA proce	97.81
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.76
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.75
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.71
PF06239	228	ECSIT: Evolutionarily conserved signalling interme	97.69
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.67
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.66
TIGR02795	119	tol_pal_ybgF tol-pal system protein YbgF. Members	97.65
cd00189	100	TPR Tetratricopeptide repeat domain; typically con	97.63
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.61
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.6
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.6
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.58
PRK02603	172	photosystem I assembly protein Ycf3; Provisional	97.58
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.53
PF14938	282	SNAP: Soluble NSF attachment protein, SNAP; PDB: 1	97.51
PF12895	84	Apc3: Anaphase-promoting complex, cyclosome, subun	97.5
PF05843	280	Suf: Suppressor of forked protein (Suf); InterPro:	97.47
PF04840	319	Vps16_C: Vps16, C-terminal region; InterPro: IPR00	97.45
CHL00033	168	ycf3 photosystem I assembly protein Ycf3	97.44
KOG2041	1189	consensus WD40 repeat protein [General function pr	97.42
PLN03088	356	SGT1, suppressor of G2 allele of SKP1; Provisional	97.41
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.4
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.38
PRK10866	243	outer membrane biogenesis protein BamD; Provisiona	97.34
PRK15363	157	pathogenicity island 2 chaperone protein SscA; Pro	97.34
PF12688	120	TPR_5: Tetratrico peptide repeat	97.3
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	97.28
KOG2796	366	consensus Uncharacterized conserved protein [Funct	97.28
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.25
KOG0553	304	consensus TPR repeat-containing protein [General f	97.25
PF03704	146	BTAD: Bacterial transcriptional activator domain;	97.23
KOG2053	932	consensus Mitochondrial inheritance and actin cyto	97.15
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.15
KOG0553	304	consensus TPR repeat-containing protein [General f	97.14
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.12
PF14559	68	TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN	97.1
PF12688	120	TPR_5: Tetratrico peptide repeat	97.1
PRK10153	517	DNA-binding transcriptional activator CadC; Provis	97.08
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	97.07
PF13525	203	YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M	97.05
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	97.01
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.98
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.97
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.92
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.92
PF12921	126	ATP13: Mitochondrial ATPase expression; InterPro:	96.91
PF13432	65	TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL	96.84
KOG2041	1189	consensus WD40 repeat protein [General function pr	96.79
PRK10803	263	tol-pal system protein YbgF; Provisional	96.77
PF13414	69	TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A	96.74
COG4235	287	Cytochrome c biogenesis factor [Posttranslational	96.73
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	96.68
KOG2280	829	consensus Vacuolar assembly/sorting protein VPS16	96.6
PRK10803	263	tol-pal system protein YbgF; Provisional	96.53
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	96.51
PRK15331	165	chaperone protein SicA; Provisional	96.42
KOG1130	639	consensus Predicted G-alpha GTPase interaction pro	96.41
COG4700	251	Uncharacterized protein conserved in bacteria cont	96.38
KOG3941	406	consensus Intermediate in Toll signal transduction	96.37
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.36
KOG2796	366	consensus Uncharacterized conserved protein [Funct	96.35
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.34
PF13371	73	TPR_9: Tetratricopeptide repeat	96.26
PF13371	73	TPR_9: Tetratricopeptide repeat	96.25
PF13424	78	TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15	96.21
PF04053	443	Coatomer_WDAD: Coatomer WD associated region ; Int	96.16
PRK15331	165	chaperone protein SicA; Provisional	96.15
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	96.12
KOG1538	1081	consensus Uncharacterized conserved protein WDR10,	96.1
smart00299	140	CLH Clathrin heavy chain repeat homology.	96.05
COG4700	251	Uncharacterized protein conserved in bacteria cont	95.96
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	95.92
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.82
KOG3941	406	consensus Intermediate in Toll signal transduction	95.75
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	95.73
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.72
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	95.69
PF09205	161	DUF1955: Domain of unknown function (DUF1955); Int	95.5
COG5107	660	RNA14 Pre-mRNA 3'-end processing (cleavage and pol	95.47
smart00299	140	CLH Clathrin heavy chain repeat homology.	95.4
PLN03098	453	LPA1 LOW PSII ACCUMULATION1; Provisional	95.33
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	95.27
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	95.11
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	95.11
COG4105	254	ComL DNA uptake lipoprotein [General function pred	94.98
KOG1920	1265	consensus IkappaB kinase complex, IKAP component [	94.94
PF13170	297	DUF4003: Protein of unknown function (DUF4003)	94.92
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	94.73
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.68
COG3629	280	DnrI DNA-binding transcriptional activator of the	94.58
KOG0543	397	consensus FKBP-type peptidyl-prolyl cis-trans isom	94.48
PF13428	44	TPR_14: Tetratricopeptide repeat	94.15
KOG4555	175	consensus TPR repeat-containing protein [Function	94.15
KOG4555	175	consensus TPR repeat-containing protein [Function	94.09
KOG0550	486	consensus Molecular chaperone (DnaJ superfamily) [	93.96
KOG1585	308	consensus Protein required for fusion of vesicles	93.89
COG3629	280	DnrI DNA-binding transcriptional activator of the	93.75
PF13512	142	TPR_18: Tetratricopeptide repeat	93.75
PF13512	142	TPR_18: Tetratricopeptide repeat	93.72
PF13281	374	DUF4071: Domain of unknown function (DUF4071)	93.71
COG3118	304	Thioredoxin domain-containing protein [Posttransla	93.68
COG0457	291	NrfG FOG: TPR repeat [General function prediction	93.63
PF13929	292	mRNA_stabil: mRNA stabilisation	93.53
KOG2610	491	consensus Uncharacterized conserved protein [Funct	93.52
PF07079	549	DUF1347: Protein of unknown function (DUF1347); In	93.19
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	93.15
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	93.15
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	93.11
KOG0276	794	consensus Vesicle coat complex COPI, beta' subunit	93.03
COG3898	531	Uncharacterized membrane-bound protein [Function u	92.99
PF10300	468	DUF3808: Protein of unknown function (DUF3808); In	92.96
KOG2610	491	consensus Uncharacterized conserved protein [Funct	92.95
PF13428	44	TPR_14: Tetratricopeptide repeat	92.91
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.83
PF07035	167	Mic1: Colon cancer-associated protein Mic1-like; I	92.8
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	92.64
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	92.57
KOG2114	933	consensus Vacuolar assembly/sorting protein PEP5/V	92.53
KOG1585	308	consensus Protein required for fusion of vesicles	92.49
COG0457	291	NrfG FOG: TPR repeat [General function prediction	92.43
PF13929	292	mRNA_stabil: mRNA stabilisation	92.43
KOG4570	418	consensus Uncharacterized conserved protein [Funct	92.09
KOG1941	518	consensus Acetylcholine receptor-associated protei	92.07
COG1729	262	Uncharacterized protein conserved in bacteria [Fun	91.97
PF08631	278	SPO22: Meiosis protein SPO22/ZIP4 like; InterPro:	91.78
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	91.4
PF10602	177	RPN7: 26S proteasome subunit RPN7; InterPro: IPR01	91.35
KOG4570	418	consensus Uncharacterized conserved protein [Funct	91.19
PF13176	36	TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_	91.15
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	91.12
PRK11906	458	transcriptional regulator; Provisional	91.04
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	90.44
COG4105	254	ComL DNA uptake lipoprotein [General function pred	90.44
PF10345	608	Cohesin_load: Cohesin loading factor; InterPro: IP	90.02
COG3118	304	Thioredoxin domain-containing protein [Posttransla	89.87
PF02284	108	COX5A: Cytochrome c oxidase subunit Va; InterPro:	89.81
COG4649	221	Uncharacterized protein conserved in bacteria [Fun	89.65
KOG1550	552	consensus Extracellular protein SEL-1 and related	88.77
PRK11906	458	transcriptional regulator; Provisional	88.72
PF04184	539	ST7: ST7 protein; InterPro: IPR007311 The ST7 (for	88.6
PF02259	352	FAT: FAT domain; InterPro: IPR003151 The FAT domai	88.49
COG3898	531	Uncharacterized membrane-bound protein [Function u	88.45
cd00923	103	Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va.	88.12
PF00637	143	Clathrin: Region in Clathrin and VPS; InterPro: IP	87.43
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	87.36
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	87.22
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	87.21
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	86.96
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	86.93
COG1747	711	Uncharacterized N-terminal domain of the transcrip	86.7
PF00515	34	TPR_1: Tetratricopeptide repeat; InterPro: IPR0014	86.66
PF13762	145	MNE1: Mitochondrial splicing apparatus component	86.37
COG3947	361	Response regulator containing CheY-like receiver a	86.04
PF13431	34	TPR_17: Tetratricopeptide repeat	85.9
PF11207	203	DUF2989: Protein of unknown function (DUF2989); In	85.62
PF13431	34	TPR_17: Tetratricopeptide repeat	85.6
PF13374	42	TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT	84.97
PF09613	160	HrpB1_HrpK: Bacterial type III secretion protein (	83.82
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	82.98
PF07719	34	TPR_2: Tetratricopeptide repeat; InterPro: IPR0131	82.44
KOG2063	877	consensus Vacuolar assembly/sorting proteins VPS39	81.82
TIGR03504	44	FimV_Cterm FimV C-terminal domain. This protein is	81.44
PRK09687	280	putative lyase; Provisional	81.36
PF04097	613	Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9	81.09
TIGR02561	153	HrpB1_HrpK type III secretion protein HrpB1/HrpK.	81.02
COG4455	273	ImpE Protein of avirulence locus involved in tempe	80.87
PF08311	126	Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro	80.76
PRK15180	831	Vi polysaccharide biosynthesis protein TviD; Provi	80.43

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=9e-57  Score=450.21  Aligned_cols=343  Identities=20%  Similarity=0.328  Sum_probs=246.1

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh---cCCCCCHHhHHHHHHHHHhcCChh
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLIE  155 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~~~~~~  155 (427)
                      .+.+.+....|+.+|+.+.     .||..+|+.++.+|++.|+++.|.++|++   .|+.||..+|+.||.+|++.|+++
T Consensus       415 ~~~~~g~~~eAl~lf~~M~-----~pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd  489 (1060)
T PLN03218        415 ACKKQRAVKEAFRFAKLIR-----NPTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVD  489 (1060)
T ss_pred             HHHHCCCHHHHHHHHHHcC-----CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHH
Confidence            3445566666666666663     26777777777777777777777777665   366677777777777777777777


Q ss_pred             HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---------hhHHHHHhcCChhHHHHHHHHHH
Q 045814          156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCNDGKVSEGYELLRQVL  226 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~l~~~~~~~g~~~~a~~~~~~~~  226 (427)
                      +|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.+         .++.+|++.|++++|.++|++|.
T Consensus       490 ~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~  569 (1060)
T PLN03218        490 AMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMK  569 (1060)
T ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            777777777777777777777777777777777777777777776543         36777777777777777777776


Q ss_pred             H--CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814          227 E--DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT  304 (427)
Q Consensus       227 ~--~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~  304 (427)
                      .  .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus       570 ~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~  649 (1060)
T PLN03218        570 AETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDE  649 (1060)
T ss_pred             HhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Confidence            4  45667777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL  384 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  384 (427)
                      .+|+++|.+|++.|++++|.+++++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|
T Consensus       650 ~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy  729 (1060)
T PLN03218        650 VFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITAL  729 (1060)
T ss_pred             HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777777


Q ss_pred             HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          385 CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       385 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      ++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++
T Consensus       730 ~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le  771 (1060)
T PLN03218        730 CEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDAD  771 (1060)
T ss_pred             HHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHH
Confidence            777777777777777777777777777777777777777654

>PLN03218 maturation of RBCL 1; Provisional

Probab=100.00  E-value=1.3e-55  Score=441.78  Aligned_cols=344  Identities=15%  Similarity=0.273  Sum_probs=330.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcC
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG  152 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~  152 (427)
                      +...+.+.++.+.|.++|+.|. +.|+.||..+|+.+|.+|++.|+++.|.++|++|   |+.||..+|+.+|.+|++.|
T Consensus       443 LL~a~~k~g~~e~A~~lf~~M~-~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G  521 (1060)
T PLN03218        443 LMSVCASSQDIDGALRVLRLVQ-EAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAG  521 (1060)
T ss_pred             HHHHHHhCcCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCc
Confidence            3344557799999999999995 5689999999999999999999999999999975   78899999999999999999


Q ss_pred             ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----------chhHHHHHhcCChhHHHHH
Q 045814          153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------GYLIQAFCNDGKVSEGYEL  221 (427)
Q Consensus       153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~l~~~~~~~g~~~~a~~~  221 (427)
                      ++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|...           +.++.+|++.|++++|.++
T Consensus       522 ~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~el  601 (1060)
T PLN03218        522 QVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEV  601 (1060)
T ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence            99999999999999999999999999999999999999999999999752           3599999999999999999


Q ss_pred             HHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 045814          222 LRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV  301 (427)
Q Consensus       222 ~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  301 (427)
                      |++|.+.|+.|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.++++|++.|++++|.++|++|.+.|+.
T Consensus       602 f~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~  681 (1060)
T PLN03218        602 YQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIK  681 (1060)
T ss_pred             HHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      ||..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|
T Consensus       682 pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL  761 (1060)
T PLN03218        682 LGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL  761 (1060)
T ss_pred             CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH
Q 045814          382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC  420 (427)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~  420 (427)
                      .+|++.|++++|.+++++|.+.|+.||..+|++++..|.
T Consensus       762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~  800 (1060)
T PLN03218        762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL  800 (1060)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence            999999999999999999999999999999999997643

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=3.3e-52  Score=414.03  Aligned_cols=339  Identities=17%  Similarity=0.191  Sum_probs=308.7

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~  158 (427)
                      .+.+.++...+.+++..+. +.|+.||..+||.++..|++.|+++.|.++|+++. .||..+||++|.+|++.|++++|+
T Consensus       132 a~~~~~~~~~a~~l~~~m~-~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-~~~~~t~n~li~~~~~~g~~~~A~  209 (697)
T PLN03081        132 ACIALKSIRCVKAVYWHVE-SSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-ERNLASWGTIIGGLVDAGNYREAF  209 (697)
T ss_pred             HHHhCCCHHHHHHHHHHHH-HhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-CCCeeeHHHHHHHHHHCcCHHHHH
Confidence            3446678888999998884 45899999999999999999999999999999987 689999999999999999999999


Q ss_pred             HHHHHHHhcCCCcCH-----------------------------------hhHHHHHHHHHHcCChhHHHHHHHHHHhc-
Q 045814          159 CAFSKLKEMGVFGSI-----------------------------------KTWNSALLGCIKIDRTDLVWKLYHDLIES-  202 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~-----------------------------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-  202 (427)
                      ++|++|.+.|+.|+.                                   .+|++|+++|++.|++++|.++|++|... 
T Consensus       210 ~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~  289 (697)
T PLN03081        210 ALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKT  289 (697)
T ss_pred             HHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCC
Confidence            999999877766654                                   45577788888999999999999988765 


Q ss_pred             ----chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 045814          203 ----GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING  278 (427)
Q Consensus       203 ----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  278 (427)
                          +.++.+|++.|+.++|+++|++|...|+.||..||+.++.+|++.|++++|.+++..|.+.|+.||..+|+.|+++
T Consensus       290 ~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~  369 (697)
T PLN03081        290 TVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDL  369 (697)
T ss_pred             hhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHH
Confidence                5699999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  358 (427)
                      |++.|++++|.++|++|.+    ||..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|
T Consensus       370 y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a  445 (697)
T PLN03081        370 YSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQG  445 (697)
T ss_pred             HHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHH
Confidence            9999999999999999964    688999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHHH-CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          359 KRLHKEMLD-KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       359 ~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      .++|+.|.+ .|+.|+..+|+.++++|++.|++++|.+++++|   ++.|+..+|++|+.+|+..|+++
T Consensus       446 ~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~  511 (697)
T PLN03081        446 WEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLE  511 (697)
T ss_pred             HHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcH
Confidence            999999976 589999999999999999999999999998766   57899999999999999999875

>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional

Probab=100.00  E-value=2.8e-51  Score=407.44  Aligned_cols=338  Identities=17%  Similarity=0.309  Sum_probs=296.7

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh---cCCCCCHHhHHHHHHHHHhcCCh
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS---TGFSPNPNSLELYIQCLCESGLI  154 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~---~~~~~~~~~~~~li~~~~~~~~~  154 (427)
                      ..+...+++..|+++|+++....++.||..+|+.++.+|++.++++.+.+++..   .|+.||..+||.|+.+|++.|++
T Consensus        95 ~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~  174 (697)
T PLN03081         95 EKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGML  174 (697)
T ss_pred             HHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCH
Confidence            345567899999999999987777899999999999999999999999998875   58899999999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-------------------------------
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------------------------------  203 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------------------  203 (427)
                      ++|.++|++|.    .||..+|++++.+|++.|++++|.++|++|.+.|                               
T Consensus       175 ~~A~~lf~~m~----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~  250 (697)
T PLN03081        175 IDARRLFDEMP----ERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCV  250 (697)
T ss_pred             HHHHHHHhcCC----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            99999999996    4799999999999999999999999999997642                               


Q ss_pred             -------------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814          204 -------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF  270 (427)
Q Consensus       204 -------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  270 (427)
                                   .++.+|++.|++++|.++|++|..    +|..+||++|.+|++.|+.++|.++|++|.+.|+.||..
T Consensus       251 ~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~  326 (697)
T PLN03081        251 LKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQF  326 (697)
T ss_pred             HHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHH
Confidence                         367788888888888888888753    577888888888888888888888888888888888888


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      ||+.++.+|++.|++++|.+++..|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+    ||..+||++|.+|+
T Consensus       327 t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~  402 (697)
T PLN03081        327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYG  402 (697)
T ss_pred             HHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHH
Confidence            88888888888888888888888888888888888888888888888888888888888853    67888888888888


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-CCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814          351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-KGIFRDVITYNTLIQGYCKEGKIVN  427 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~~~~~li~~~~~~g~~~e  427 (427)
                      +.|+.++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|++++++|++.|+++|
T Consensus       403 ~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e  480 (697)
T PLN03081        403 NHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE  480 (697)
T ss_pred             HcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence            8888888888888888888888888888888888888888888888888876 5888888888888888888888764

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=6.8e-50  Score=406.53  Aligned_cols=342  Identities=15%  Similarity=0.207  Sum_probs=277.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcC
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESG  152 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~  152 (427)
                      +...+.+.++++.|.++|+.+.     .||..+||.+|.+|++.|++++|.++|++|   |+.||..||+.++.+|++.|
T Consensus       228 Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g  302 (857)
T PLN03077        228 LITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG  302 (857)
T ss_pred             HHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcC
Confidence            3445566778888888888873     477888888888888888888888888763   77888888888888888888


Q ss_pred             ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----chhHHHHHhcCChhHHHHHHHHHHH
Q 045814          153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----GYLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      +++.|.+++..|.+.|+.||..+|++|+.+|++.|++++|.++|++|...     +.++.+|++.|++++|+++|++|..
T Consensus       303 ~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~  382 (857)
T PLN03077        303 DERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQ  382 (857)
T ss_pred             ChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence            88888888888888888888888999999999999999999999988765     4689999999999999999999999


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY  307 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  307 (427)
                      .|+.||..||+.++.+|++.|+++.|.++++.|.+.|+.|+..+|+.|+++|++.|++++|.++|++|.+    +|..+|
T Consensus       383 ~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~----~d~vs~  458 (857)
T PLN03077        383 DNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPE----KDVISW  458 (857)
T ss_pred             hCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCC----CCeeeH
Confidence            9999999999999999999999999999999999999999999999999999999999888888888864    355666


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCC--------------------------------------------------
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLP--------------------------------------------------  337 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--------------------------------------------------  337 (427)
                      +++|.+|++.|+.++|..+|++|.. ++.|                                                  
T Consensus       459 ~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~  537 (857)
T PLN03077        459 TSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRC  537 (857)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHc
Confidence            6666666666666666666666653 2333                                                  


Q ss_pred             ---------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-
Q 045814          338 ---------------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA-  401 (427)
Q Consensus       338 ---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~-  401 (427)
                                     |..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.++|++|. 
T Consensus       538 G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~  617 (857)
T PLN03077        538 GRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEE  617 (857)
T ss_pred             CCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHH
Confidence                           4455666777777777777788888888877888888888888888888888888888888887 


Q ss_pred             HCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814          402 QKGIFRDVITYNTLIQGYCKEGKIVN  427 (427)
Q Consensus       402 ~~g~~p~~~~~~~li~~~~~~g~~~e  427 (427)
                      +.|+.|+..+|++++++|++.|+++|
T Consensus       618 ~~gi~P~~~~y~~lv~~l~r~G~~~e  643 (857)
T PLN03077        618 KYSITPNLKHYACVVDLLGRAGKLTE  643 (857)
T ss_pred             HhCCCCchHHHHHHHHHHHhCCCHHH
Confidence            56788888888888888888887653

>PLN03077 Protein ECB2; Provisional

Probab=100.00  E-value=1.2e-48  Score=397.40  Aligned_cols=335  Identities=18%  Similarity=0.243  Sum_probs=267.7

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHH
Q 045814           81 KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA  160 (427)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~  160 (427)
                      ...++.+.+.+++..+. ..|+.||..+||.|+.+|++.|++++|.++|+++. .||..+||++|.+|++.|++++|+++
T Consensus       299 ~~~g~~~~a~~l~~~~~-~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~-~~d~~s~n~li~~~~~~g~~~~A~~l  376 (857)
T PLN03077        299 ELLGDERLGREMHGYVV-KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRME-TKDAVSWTAMISGYEKNGLPDKALET  376 (857)
T ss_pred             HhcCChHHHHHHHHHHH-HhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCC-CCCeeeHHHHHHHHHhCCCHHHHHHH
Confidence            34455555555555553 34677788888888888888888888888888876 57888888888888888888888888


Q ss_pred             HHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---------hhHHHHHh--------------------
Q 045814          161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---------YLIQAFCN--------------------  211 (427)
Q Consensus       161 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------~l~~~~~~--------------------  211 (427)
                      |++|.+.|+.||..||+.++.+|++.|++++|.++++.+.+.|         .++.+|++                    
T Consensus       377 f~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~v  456 (857)
T PLN03077        377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVI  456 (857)
T ss_pred             HHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCee
Confidence            8888888888888777777777776666666666666666553         24444444                    


Q ss_pred             -----------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 045814          212 -----------DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC  280 (427)
Q Consensus       212 -----------~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  280 (427)
                                 .|+.++|+++|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+.|+.+|..+++.++++|+
T Consensus       457 s~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~  535 (857)
T PLN03077        457 SWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYV  535 (857)
T ss_pred             eHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHH
Confidence                       4455555555555543 3556666666666666666666666666666666666666667777777888


Q ss_pred             hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814          281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR  360 (427)
Q Consensus       281 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  360 (427)
                      +.|++++|.++|+.+     .||..+||++|.+|++.|+.++|.++|++|.+.|+.||..||+.++.+|++.|.+++|.+
T Consensus       536 k~G~~~~A~~~f~~~-----~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~  610 (857)
T PLN03077        536 RCGRMNYAWNQFNSH-----EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLE  610 (857)
T ss_pred             HcCCHHHHHHHHHhc-----CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHH
Confidence            888888888888776     479999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHH-HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          361 LHKEML-DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       361 ~~~~m~-~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      +|+.|. +.|+.|+..+|+.++++|++.|++++|.+++++|.   +.||..+|++|+.+|..+|+++
T Consensus       611 ~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~---~~pd~~~~~aLl~ac~~~~~~e  674 (857)
T PLN03077        611 YFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMP---ITPDPAVWGALLNACRIHRHVE  674 (857)
T ss_pred             HHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCC---CCCCHHHHHHHHHHHHHcCChH
Confidence            999999 67999999999999999999999999999999994   7899999999999999888764

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.93  E-value=2.1e-21  Score=200.93  Aligned_cols=340  Identities=13%  Similarity=0.092  Sum_probs=284.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCCh
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLI  154 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~  154 (427)
                      ..++...++.+.|..+|..+...  .+.+...+..+...+.+.|++++|..+++++  ..+.+...|..+..+|...|++
T Consensus       540 ~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~  617 (899)
T TIGR02917       540 AGLYLRTGNEEEAVAWLEKAAEL--NPQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDL  617 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCH
Confidence            34555678888898888887553  2445677888888899999999999998873  2345677899999999999999


Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHH
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVL  226 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~  226 (427)
                      ++|...|+++.+.... +...+..+..++...|++++|...|+.+.+.+        .+...+...|++++|.++++.+.
T Consensus       618 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~  696 (899)
T TIGR02917       618 NKAVSSFKKLLALQPD-SALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAKRTESAKKIAKSLQ  696 (899)
T ss_pred             HHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            9999999998876433 67778888899999999999999999887763        37788889999999999999998


Q ss_pred             HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 045814          227 EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM  306 (427)
Q Consensus       227 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  306 (427)
                      .... .+...+..+...+...|++++|.+.++.+...+  |+..++..+...+.+.|++++|.+.++.+.+.... +...
T Consensus       697 ~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~~~-~~~~  772 (899)
T TIGR02917       697 KQHP-KAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTHPN-DAVL  772 (899)
T ss_pred             hhCc-CChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHH
Confidence            7764 367788888899999999999999999998875  44467778889999999999999999999877543 7778


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL  386 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  386 (427)
                      +..+...|...|+.++|..+|+++.+.. +.+..+++.+...+...|+ .+|..+++++.+.. +-+..++..+...+..
T Consensus       773 ~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~  849 (899)
T TIGR02917       773 RTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVE  849 (899)
T ss_pred             HHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHH
Confidence            8889999999999999999999999875 3477889999999999999 88999999998763 2356778888999999


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814          387 HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN  427 (427)
Q Consensus       387 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e  427 (427)
                      .|++++|.++|+++.+.+.. +..++..+..++++.|+.++
T Consensus       850 ~g~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~g~~~~  889 (899)
T TIGR02917       850 KGEADRALPLLRKAVNIAPE-AAAIRYHLALALLATGRKAE  889 (899)
T ss_pred             cCCHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHcCCHHH
Confidence            99999999999999998765 89999999999999998764

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein

Probab=99.91  E-value=3.6e-20  Score=191.84  Aligned_cols=336  Identities=10%  Similarity=0.051  Sum_probs=181.9

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCChhHH
Q 045814           80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A  157 (427)
                      +...++++.|+.+++.+...  .+.+..++..+...+...|++++|.+.|++. ...| +...+..+...+...|++++|
T Consensus       441 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A  518 (899)
T TIGR02917       441 YLRSGQFDKALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDA  518 (899)
T ss_pred             HHhcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHH
Confidence            33456666666666666442  3445566666666666667777776666652 2222 344555566666666666666


Q ss_pred             HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814          158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDG  229 (427)
Q Consensus       158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~  229 (427)
                      .+.|+++.+.+.. +..++..+...+.+.|+.++|..+++++...+        .++..+...|++++|..+++.+....
T Consensus       519 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~  597 (899)
T TIGR02917       519 IQRFEKVLTIDPK-NLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADAA  597 (899)
T ss_pred             HHHHHHHHHhCcC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence            6666666654332 45556666666666666666666666654432        24455555555555555555555432


Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--------
Q 045814          230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--------  301 (427)
Q Consensus       230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--------  301 (427)
                      . .+..+|..+..++...|++++|...++.+.+.. +.+...+..+...+.+.|++++|..+|+++.+....        
T Consensus       598 ~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l  675 (899)
T TIGR02917       598 P-DSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGL  675 (899)
T ss_pred             C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            2 244455555555555555555555555555442 123344445555555555555555555555443221        


Q ss_pred             -------------------------CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814          302 -------------------------PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE  356 (427)
Q Consensus       302 -------------------------p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  356 (427)
                                               .+...+..+...+...|++++|...++++...+  |+..++..+..++.+.|+++
T Consensus       676 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~  753 (899)
T TIGR02917       676 AQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTA  753 (899)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHH
Confidence                                     133444444455555555555555555555442  23344444555555555555


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814          357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK  424 (427)
Q Consensus       357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  424 (427)
                      +|.+.++.+.+.. +.+...+..+...|...|++++|.++|+++.+.. +.+...+..+...+.+.|+
T Consensus       754 ~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~  819 (899)
T TIGR02917       754 EAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD  819 (899)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc
Confidence            5555555555442 2345555566666666666666666666665543 2345556666666655554

This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.91  E-value=2.8e-21  Score=180.57  Aligned_cols=296  Identities=11%  Similarity=0.043  Sum_probs=210.9

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCC------HHhHHHHHHHHHhcCCh
Q 045814           81 KQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN------PNSLELYIQCLCESGLI  154 (427)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~li~~~~~~~~~  154 (427)
                      ...++++.|+..|..+...  .+.+..++..+...+...|++++|..+++.+-..|+      ...+..+...|.+.|++
T Consensus        46 ~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~  123 (389)
T PRK11788         46 LLNEQPDKAIDLFIEMLKV--DPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLL  123 (389)
T ss_pred             HhcCChHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCH
Confidence            3456666666666666542  122344666666666666666666666665321221      13455666666666666


Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC-
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE-  233 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-  233 (427)
                      ++|..+|+++.+... .+..++..++..+.+.|+                          +++|.+.++.+...+..+. 
T Consensus       124 ~~A~~~~~~~l~~~~-~~~~~~~~la~~~~~~g~--------------------------~~~A~~~~~~~~~~~~~~~~  176 (389)
T PRK11788        124 DRAEELFLQLVDEGD-FAEGALQQLLEIYQQEKD--------------------------WQKAIDVAERLEKLGGDSLR  176 (389)
T ss_pred             HHHHHHHHHHHcCCc-chHHHHHHHHHHHHHhch--------------------------HHHHHHHHHHHHHhcCCcch
Confidence            666666666665422 244555555555555554                          5555555555544333221 


Q ss_pred             ---HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814          234 ---NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV  310 (427)
Q Consensus       234 ---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  310 (427)
                         ...+..+...+.+.|++++|.+.++++.+... .+...+..+...|.+.|++++|.++|+++.+.+......+++.+
T Consensus       177 ~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l  255 (389)
T PRK11788        177 VEIAHFYCELAQQALARGDLDAARALLKKALAADP-QCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKL  255 (389)
T ss_pred             HHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhHCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHH
Confidence               22456677788899999999999999987642 24567888889999999999999999999876433334678889


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---c
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL---H  387 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~  387 (427)
                      +.+|.+.|++++|...++++.+.  .|+...+..+...+.+.|++++|..+++++.+.  .|+..+++.++..+..   .
T Consensus       256 ~~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~  331 (389)
T PRK11788        256 MECYQALGDEAEGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEE  331 (389)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCC
Confidence            99999999999999999999886  466667788999999999999999999998876  5888899988888775   5


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHh
Q 045814          388 GRTDEAYHLFEEMAQKGIFRDVI  410 (427)
Q Consensus       388 g~~~~A~~~~~~m~~~g~~p~~~  410 (427)
                      |+.+++..++++|.++++.|++.
T Consensus       332 g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        332 GRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             ccchhHHHHHHHHHHHHHhCCCC
Confidence            68999999999999988877765

>PRK11788 tetratricopeptide repeat protein; Provisional

Probab=99.89  E-value=8.2e-20  Score=170.73  Aligned_cols=269  Identities=12%  Similarity=0.086  Sum_probs=207.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCC--CHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhc
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSP--DLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCES  151 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~  151 (427)
                      +..++...++++.|..+++.+.......+  ....+..+...+.+.|+++.|...|+++ .. ..+..+++.++..+.+.
T Consensus        75 la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~  154 (389)
T PRK11788         75 LGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAEELFLQLVDEGDFAEGALQQLLEIYQQE  154 (389)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHh
Confidence            44566788999999999999876432222  2357888899999999999999999984 22 34577899999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCcCHh----hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814          152 GLIEEAFCAFSKLKEMGVFGSIK----TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       152 ~~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      |++++|.+.++.+.+.+..+...    .+..                          +...+.+.|++++|...++++.+
T Consensus       155 g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------------la~~~~~~~~~~~A~~~~~~al~  208 (389)
T PRK11788        155 KDWQKAIDVAERLEKLGGDSLRVEIAHFYCE--------------------------LAQQALARGDLDAARALLKKALA  208 (389)
T ss_pred             chHHHHHHHHHHHHHhcCCcchHHHHHHHHH--------------------------HHHHHHhCCCHHHHHHHHHHHHh
Confidence            99999999999998865443221    1222                          23344556666666666666665


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY  307 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  307 (427)
                      .... +...+..+...+.+.|++++|.++++++.+.+......+++.+..+|.+.|++++|...++++.+..  |+...+
T Consensus       209 ~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~  285 (389)
T PRK11788        209 ADPQ-CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY--PGADLL  285 (389)
T ss_pred             HCcC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHH
Confidence            4322 4567778888999999999999999998876433334678888999999999999999999988763  566667


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh---cCCHHHHHHHHHHHHHCCCCCChh
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR---IDNLEEAKRLHKEMLDKGYGETTV  375 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~~~~p~~~  375 (427)
                      ..++..+.+.|++++|..+++++.+.  .|+..+++.++..+..   .|+.+++..++++|.+.++.|++.
T Consensus       286 ~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~  354 (389)
T PRK11788        286 LALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR  354 (389)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence            88889999999999999999998876  6888888888877664   458889999999999877776665

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.85  E-value=7.2e-17  Score=158.75  Aligned_cols=321  Identities=12%  Similarity=0.033  Sum_probs=258.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcC
Q 045814           75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESG  152 (427)
Q Consensus        75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~  152 (427)
                      .+..-+.+.+++..|+.++......  .+-+...+..++......|+++.|...+++ ....| +...+..+...+.+.|
T Consensus        47 ~~~~~~~~~g~~~~A~~l~~~~l~~--~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g  124 (656)
T PRK15174         47 LFAIACLRKDETDVGLTLLSDRVLT--AKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSK  124 (656)
T ss_pred             HHHHHHHhcCCcchhHHHhHHHHHh--CCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcC
Confidence            3344455678999999998888654  233455666666777789999999999998 34455 4667888899999999


Q ss_pred             ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-------hHHHHHhcCChhHHHHHHHHH
Q 045814          153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------LIQAFCNDGKVSEGYELLRQV  225 (427)
Q Consensus       153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------l~~~~~~~g~~~~a~~~~~~~  225 (427)
                      ++++|...|++..+.... +...+..+...+...|+.++|...++.+.....       .+..+...|++++|...++.+
T Consensus       125 ~~~~Ai~~l~~Al~l~P~-~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~~~a~~~~~~l~~~g~~~eA~~~~~~~  203 (656)
T PRK15174        125 QYATVADLAEQAWLAFSG-NSQIFALHLRTLVLMDKELQAISLARTQAQEVPPRGDMIATCLSFLNKSRLPEDHDLARAL  203 (656)
T ss_pred             CHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            999999999999886433 577888899999999999999999988765421       223477899999999999998


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH----HHHHHHHHHhCCCC
Q 045814          226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE----AYRVFNDLKERGYV  301 (427)
Q Consensus       226 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~----a~~~~~~m~~~~~~  301 (427)
                      ......++...+..+...+...|++++|...++++.+... .+...+..+...|...|++++    |...|++..+....
T Consensus       204 l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P~  282 (656)
T PRK15174        204 LPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNSD  282 (656)
T ss_pred             HhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCCC
Confidence            8765444555566667888999999999999999998753 356788889999999999986    89999999887543


Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh-hhHHHH
Q 045814          302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT-VTYNTL  380 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l  380 (427)
                       +...+..+...+.+.|++++|...+++..+.... +...+..+..++.+.|++++|...++.+.+.+  |+. ..+..+
T Consensus       283 -~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~  358 (656)
T PRK15174        283 -NVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYA  358 (656)
T ss_pred             -CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHH
Confidence             6678899999999999999999999999987422 45667778889999999999999999998763  443 334445


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..++...|+.++|...|++..+.
T Consensus       359 a~al~~~G~~deA~~~l~~al~~  381 (656)
T PRK15174        359 AAALLQAGKTSEAESVFEHYIQA  381 (656)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHh
Confidence            67889999999999999998876

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.82  E-value=1.3e-15  Score=150.12  Aligned_cols=342  Identities=12%  Similarity=0.013  Sum_probs=248.6

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChh
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIE  155 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~  155 (427)
                      ..+...+++..|+..|..+..   ..|+...|..+..+|.+.|++++|++.+++ ....|+ ...|..+..+|...|+++
T Consensus       135 ~~~~~~~~~~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~  211 (615)
T TIGR00990       135 NKAYRNKDFNKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYA  211 (615)
T ss_pred             HHHHHcCCHHHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHH
Confidence            345567899999999999864   568888999999999999999999999987 455554 668899999999999999


Q ss_pred             HHHHHHHHHHhcCCC----------------------------c-CHhhHHHH---------------------------
Q 045814          156 EAFCAFSKLKEMGVF----------------------------G-SIKTWNSA---------------------------  179 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~----------------------------p-~~~~~~~l---------------------------  179 (427)
                      +|+.-|......+..                            | +...+..+                           
T Consensus       212 eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  291 (615)
T TIGR00990       212 DALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETG  291 (615)
T ss_pred             HHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccc
Confidence            998766544321100                            0 00000000                           


Q ss_pred             ---HHHH------HHcCChhHHHHHHHHHHhcc-----------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045814          180 ---LLGC------IKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK  239 (427)
Q Consensus       180 ---l~~~------~~~~~~~~a~~~~~~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  239 (427)
                         +...      ...+++++|.+.|+..++.+           .+...+...|++++|+..+++....... ....|..
T Consensus       292 ~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~-~~~~~~~  370 (615)
T TIGR00990       292 NGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPR-VTQSYIK  370 (615)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHH
Confidence               0000      11246778888888887642           2455667789999999999988875432 4567888


Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814          240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW  319 (427)
Q Consensus       240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  319 (427)
                      +...+...|++++|...|++..+... .+..+|..+...+...|++++|...|++..+.... +...+..+...+.+.|+
T Consensus       371 la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P~-~~~~~~~la~~~~~~g~  448 (615)
T TIGR00990       371 RASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDPD-FIFSHIQLGVTQYKEGS  448 (615)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCcc-CHHHHHHHHHHHHHCCC
Confidence            88888889999999999998877643 35678888888899999999999999998877533 56677778888888999


Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh------hHHHHHHHHHhcCCHHHH
Q 045814          320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV------TYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       320 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~A  393 (427)
                      +++|+..+++..+.. +-+...++.+...+...|++++|.+.|+...+.....+..      .++..+..+...|++++|
T Consensus       449 ~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA  527 (615)
T TIGR00990       449 IASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEA  527 (615)
T ss_pred             HHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHH
Confidence            999999999888753 2346778888888899999999999999887653211111      122222334446889999


Q ss_pred             HHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814          394 YHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN  427 (427)
Q Consensus       394 ~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e  427 (427)
                      .+++++...... -+...+..+...+.+.|++++
T Consensus       528 ~~~~~kAl~l~p-~~~~a~~~la~~~~~~g~~~e  560 (615)
T TIGR00990       528 ENLCEKALIIDP-ECDIAVATMAQLLLQQGDVDE  560 (615)
T ss_pred             HHHHHHHHhcCC-CcHHHHHHHHHHHHHccCHHH
Confidence            999988877532 234567888888888888653

>PRK15174 Vi polysaccharide export protein VexE; Provisional

Probab=99.81  E-value=2.8e-16  Score=154.63  Aligned_cols=310  Identities=13%  Similarity=0.056  Sum_probs=249.9

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814          109 CNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI  186 (427)
Q Consensus       109 ~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  186 (427)
                      ...++..+.+.|++++|..+++. ....| +...+..++.+....|++++|.+.|+++.+.... +...+..+...+...
T Consensus        45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~-~~~a~~~la~~l~~~  123 (656)
T PRK15174         45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVC-QPEDVLLVASVLLKS  123 (656)
T ss_pred             HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHc
Confidence            33446667889999999999987 33334 4556777778888899999999999999987544 677888899999999


Q ss_pred             CChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          187 DRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       187 ~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      |+.++|...++++....        .+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus       124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~  201 (656)
T PRK15174        124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR  201 (656)
T ss_pred             CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence            99999999999998852        3677899999999999999988766544 33334333 34788999999999999


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH----HHHHHHHHHHcC
Q 045814          259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD----ARKMWFEMIHKG  334 (427)
Q Consensus       259 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~----a~~~~~~m~~~~  334 (427)
                      .+.+....++...+..+...+.+.|++++|...++++.+.... +...+..+...+...|++++    |...++++.+..
T Consensus       202 ~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~-~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~  280 (656)
T PRK15174        202 ALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLD-GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFN  280 (656)
T ss_pred             HHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhC
Confidence            9887754445555666678899999999999999999887543 67788889999999999986    899999999864


Q ss_pred             CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhH-HH
Q 045814          335 LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVIT-YN  413 (427)
Q Consensus       335 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~-~~  413 (427)
                      . .+...+..+...+...|++++|...+++..+... .+...+..+..+|...|++++|...|+++...  .|+... +.
T Consensus       281 P-~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P-~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~--~P~~~~~~~  356 (656)
T PRK15174        281 S-DNVRIVTLYADALIRTGQNEKAIPLLQQSLATHP-DLPYVRAMYARALRQVGQYTAASDEFVQLARE--KGVTSKWNR  356 (656)
T ss_pred             C-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CccchHHHH
Confidence            2 3567888999999999999999999999998642 25667888899999999999999999999875  455433 33


Q ss_pred             HHHHHHHhcCCCC
Q 045814          414 TLIQGYCKEGKIV  426 (427)
Q Consensus       414 ~li~~~~~~g~~~  426 (427)
                      .+..++...|+.+
T Consensus       357 ~~a~al~~~G~~d  369 (656)
T PRK15174        357 YAAAALLQAGKTS  369 (656)
T ss_pred             HHHHHHHHCCCHH
Confidence            4566788888765

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.79  E-value=6.5e-15  Score=154.64  Aligned_cols=339  Identities=13%  Similarity=0.037  Sum_probs=214.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHH------------HHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHH
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCN------------VLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLE  142 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~------------~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~  142 (427)
                      ..++...++.+.|+..|+.+.+...-.++...+.            .....+.+.|++++|...+++ ....| +...+.
T Consensus       310 g~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~  389 (1157)
T PRK11447        310 GQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVL  389 (1157)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence            3455566777777777777654321111111111            123345567777777777776 23333 345666


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc-----------------chh
Q 045814          143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES-----------------GYL  205 (427)
Q Consensus       143 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------------~~l  205 (427)
                      .+...+...|++++|++.|++..+.... +...+..+...+. .++.++|..+++.+...                 ..+
T Consensus       390 ~Lg~~~~~~g~~~eA~~~y~~aL~~~p~-~~~a~~~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~  467 (1157)
T PRK11447        390 GLGDVAMARKDYAAAERYYQQALRMDPG-NTNAVRGLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQ  467 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHH
Confidence            6777777777777777777777765322 3444555555543 34556666555443211                 013


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHH---------
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI---------  276 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll---------  276 (427)
                      ...+...|++++|.+.+++.....+. +...+..+...|.+.|++++|...++++.+.... +...+..+.         
T Consensus       468 a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~  545 (1157)
T PRK11447        468 AEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRD  545 (1157)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCH
Confidence            34556678888888888887775543 5566777777888888888888888877765322 222222222         


Q ss_pred             -----------------------------------HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814          277 -----------------------------------NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG  321 (427)
Q Consensus       277 -----------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  321 (427)
                                                         ..+...|+.++|..+++.     ...+...+..+...+.+.|+.+
T Consensus       546 ~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~  620 (1157)
T PRK11447        546 RAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYA  620 (1157)
T ss_pred             HHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHH
Confidence                                               233344444555444441     1234456677888888999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +|+..|++..+.. +.+...+..+...|...|++++|.+.++...+.. +.+...+..+..++...|++++|.++++++.
T Consensus       621 ~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~~eA~~~~~~al  698 (1157)
T PRK11447        621 AARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDTAAAQRTFNRLI  698 (1157)
T ss_pred             HHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCHHHHHHHHHHHh
Confidence            9999999998874 2357788888999999999999999999887642 2245667777888889999999999999988


Q ss_pred             HCCCC--C---CHhHHHHHHHHHHhcCCCC
Q 045814          402 QKGIF--R---DVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       402 ~~g~~--p---~~~~~~~li~~~~~~g~~~  426 (427)
                      .....  |   +...+..+...+...|+.+
T Consensus       699 ~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~  728 (1157)
T PRK11447        699 PQAKSQPPSMESALVLRDAARFEAQTGQPQ  728 (1157)
T ss_pred             hhCccCCcchhhHHHHHHHHHHHHHcCCHH
Confidence            75322  2   2235555566666666653

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=4.1e-16  Score=141.53  Aligned_cols=321  Identities=13%  Similarity=0.081  Sum_probs=234.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH---------------
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSP-DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP---------------  138 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~---------------  138 (427)
                      +..+++.+++...|+..++.+.+   .+| .+..|..+..++...|+.+.|...|.+ ..+.|+.               
T Consensus       122 ~aN~~kerg~~~~al~~y~~aie---l~p~fida~inla~al~~~~~~~~a~~~~~~alqlnP~l~ca~s~lgnLlka~G  198 (966)
T KOG4626|consen  122 LANILKERGQLQDALALYRAAIE---LKPKFIDAYINLAAALVTQGDLELAVQCFFEALQLNPDLYCARSDLGNLLKAEG  198 (966)
T ss_pred             HHHHHHHhchHHHHHHHHHHHHh---cCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcCcchhhhhcchhHHHHhhc
Confidence            44667777888888888887764   345 366777777788888877777776654 3334432               


Q ss_pred             --------------------HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 045814          139 --------------------NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD  198 (427)
Q Consensus       139 --------------------~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  198 (427)
                                          ..|+.|...+-..|+...|++-|++..+.... -...|-.|...|...+.+++|...|.+
T Consensus       199 rl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~-f~dAYiNLGnV~ke~~~~d~Avs~Y~r  277 (966)
T KOG4626|consen  199 RLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPN-FLDAYINLGNVYKEARIFDRAVSCYLR  277 (966)
T ss_pred             ccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCc-chHHHhhHHHHHHHHhcchHHHHHHHH
Confidence                                23445555555566666666666666553222 244566677777777777777777766


Q ss_pred             HHhc--------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814          199 LIES--------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF  270 (427)
Q Consensus       199 ~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  270 (427)
                      ....        |-+...|...|.++.|+..+++.++..+. -...|+.|..++-..|++.+|.+.+.+...... .-..
T Consensus       278 Al~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~-F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p-~had  355 (966)
T KOG4626|consen  278 ALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQPN-FPDAYNNLANALKDKGSVTEAVDCYNKALRLCP-NHAD  355 (966)
T ss_pred             HHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhcCCC-chHHHhHHHHHHHhccchHHHHHHHHHHHHhCC-ccHH
Confidence            5543        33666777888888888888888875433 456888888888888999999999888877642 2356


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGY  349 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~  349 (427)
                      ..+.|.+.|...|++++|..+|....+-... -...++.|...|-+.|++++|+.-|++..+-  .|+ ...|+.+...|
T Consensus       356 am~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fAda~~NmGnt~  432 (966)
T KOG4626|consen  356 AMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFADALSNMGNTY  432 (966)
T ss_pred             HHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHHHHHHhcchHH
Confidence            7788888899999999999999888775322 3457888888899999999999999888774  565 56788888889


Q ss_pred             hhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH
Q 045814          350 CRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV  409 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~  409 (427)
                      -..|+++.|.+.+.+.+..  .|. ....+.|...|-.+|++.+|+.-|++..+  ++||.
T Consensus       433 ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLk--lkPDf  489 (966)
T KOG4626|consen  433 KEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALK--LKPDF  489 (966)
T ss_pred             HHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHc--cCCCC
Confidence            9999999999998888764  344 46778888899999999999999998887  46664

>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=99.78  E-value=1.6e-15  Score=137.69  Aligned_cols=296  Identities=13%  Similarity=0.095  Sum_probs=238.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCC-HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCC
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPD-LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGL  153 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~  153 (427)
                      ..+++..+....|-..+..+.+   ..|. ...|+.|...+-.+|+...|+.-|++ ..+.|+ ...|-.|...|...+.
T Consensus       191 gnLlka~Grl~ea~~cYlkAi~---~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~  267 (966)
T KOG4626|consen  191 GNLLKAEGRLEEAKACYLKAIE---TQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARI  267 (966)
T ss_pred             hHHHHhhcccchhHHHHHHHHh---hCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhc
Confidence            3444555555555555444432   2333 34677777777788888888888887 566776 6789999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHH
Q 045814          154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQV  225 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~  225 (427)
                      +++|...|.+....... .+..+..+...|...|..+.|+..|++.++..        -+..++-..|++.+|++.+.+.
T Consensus       268 ~d~Avs~Y~rAl~lrpn-~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~NlanALkd~G~V~ea~~cYnka  346 (966)
T KOG4626|consen  268 FDRAVSCYLRALNLRPN-HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNLANALKDKGSVTEAVDCYNKA  346 (966)
T ss_pred             chHHHHHHHHHHhcCCc-chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHHHHHHHhccchHHHHHHHHHH
Confidence            99999999988875333 57788888899999999999999999998873        4888888999999999999999


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-h
Q 045814          226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-T  304 (427)
Q Consensus       226 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~  304 (427)
                      ...... -..+.+.|...|...|.++.|..+|....+-... -...++.|...|-+.|++++|...|++....  .|+ .
T Consensus       347 L~l~p~-hadam~NLgni~~E~~~~e~A~~ly~~al~v~p~-~aaa~nNLa~i~kqqgnl~~Ai~~YkealrI--~P~fA  422 (966)
T KOG4626|consen  347 LRLCPN-HADAMNNLGNIYREQGKIEEATRLYLKALEVFPE-FAAAHNNLASIYKQQGNLDDAIMCYKEALRI--KPTFA  422 (966)
T ss_pred             HHhCCc-cHHHHHHHHHHHHHhccchHHHHHHHHHHhhChh-hhhhhhhHHHHHHhcccHHHHHHHHHHHHhc--CchHH
Confidence            886543 5668889999999999999999999988776322 3468899999999999999999999998875  565 4


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIA  382 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~  382 (427)
                      ..|+.+...|-..|+.+.|.+.+.+.+..  .|. ...++.|...|-..|++.+|.+-++...+.  +|| +..|..++.
T Consensus       423 da~~NmGnt~ke~g~v~~A~q~y~rAI~~--nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLkl--kPDfpdA~cNllh  498 (966)
T KOG4626|consen  423 DALSNMGNTYKEMGDVSAAIQCYTRAIQI--NPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKL--KPDFPDAYCNLLH  498 (966)
T ss_pred             HHHHhcchHHHHhhhHHHHHHHHHHHHhc--CcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHcc--CCCCchhhhHHHH
Confidence            58999999999999999999999999886  444 567899999999999999999999999875  555 445655655


Q ss_pred             HH
Q 045814          383 GL  384 (427)
Q Consensus       383 ~~  384 (427)
                      ++
T Consensus       499 ~l  500 (966)
T KOG4626|consen  499 CL  500 (966)
T ss_pred             HH
Confidence            54

>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70)

Probab=99.77  E-value=1.2e-14  Score=143.38  Aligned_cols=291  Identities=13%  Similarity=0.024  Sum_probs=237.3

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI  186 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  186 (427)
                      .+......+.+.|+++.|+..|++ ....|+...|..+..+|.+.|++++|++.+++..+.... +...|..+..+|...
T Consensus       129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~a~a~~~l  207 (615)
T TIGR00990       129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPD-YSKALNRRANAYDGL  207 (615)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHc
Confidence            344567778899999999999998 677889899999999999999999999999999987543 677899999999999


Q ss_pred             CChhHHHHHHHHHHhcc-------------------------------------hhHH----------------------
Q 045814          187 DRTDLVWKLYHDLIESG-------------------------------------YLIQ----------------------  207 (427)
Q Consensus       187 ~~~~~a~~~~~~~~~~~-------------------------------------~l~~----------------------  207 (427)
                      |++++|..-|..+....                                     ..+.                      
T Consensus       208 g~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  287 (615)
T TIGR00990       208 GKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELD  287 (615)
T ss_pred             CCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccc
Confidence            99999986554332110                                     0000                      


Q ss_pred             -----HH----------HhcCChhHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814          208 -----AF----------CNDGKVSEGYELLRQVLEDG-LVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF  270 (427)
Q Consensus       208 -----~~----------~~~g~~~~a~~~~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  270 (427)
                           ++          ...+++++|.+.|+.....+ ..| ....++.+...+...|++++|...+++..+... -+..
T Consensus       288 ~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P-~~~~  366 (615)
T TIGR00990       288 EETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDP-RVTQ  366 (615)
T ss_pred             cccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CcHH
Confidence                 00          11256889999999988764 223 456788888888999999999999999988742 2356


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .|..+...+...|++++|...|+++.+.... +...|..+...+...|++++|...|++..+.. +.+...+..+...+.
T Consensus       367 ~~~~la~~~~~~g~~~eA~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~-P~~~~~~~~la~~~~  444 (615)
T TIGR00990       367 SYIKRASMNLELGDPDKAEEDFDKALKLNSE-DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD-PDFIFSHIQLGVTQY  444 (615)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-ccCHHHHHHHHHHHH
Confidence            7888889999999999999999999887543 57789999999999999999999999999874 235667788888999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +.|++++|...+++..+. .+.+...|+.+...+...|++++|.+.|++....
T Consensus       445 ~~g~~~eA~~~~~~al~~-~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  496 (615)
T TIGR00990       445 KEGSIASSMATFRRCKKN-FPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL  496 (615)
T ss_pred             HCCCHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence            999999999999999875 3336788999999999999999999999998875

>PRK11447 cellulose synthase subunit BcsC; Provisional

Probab=99.75  E-value=1.9e-14  Score=151.24  Aligned_cols=339  Identities=9%  Similarity=0.005  Sum_probs=237.9

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH---HhHH------------
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP---NSLE------------  142 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~---~~~~------------  142 (427)
                      .+...++++.|+..|+.+...  .+.+...+..+..++.+.|++++|...|++ ....|+.   ..|.            
T Consensus       278 ~~~~~g~~~~A~~~l~~aL~~--~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~  355 (1157)
T PRK11447        278 AAVDSGQGGKAIPELQQAVRA--NPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLI  355 (1157)
T ss_pred             HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHH
Confidence            344568888999999888653  233678888888999999999999999887 3333432   1121            


Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCC
Q 045814          143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGK  214 (427)
Q Consensus       143 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~  214 (427)
                      .+...+.+.|++++|...|+++.+.... +...+..+...+...|++++|++.|+++++...        +...| ..++
T Consensus       356 ~~g~~~~~~g~~~eA~~~~~~Al~~~P~-~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~-~~~~  433 (1157)
T PRK11447        356 QQGDAALKANNLAQAERLYQQARQVDNT-DSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLY-RQQS  433 (1157)
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH-HhcC
Confidence            2244667889999999999999887543 567777888899999999999999998886531        33344 3467


Q ss_pred             hhHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH
Q 045814          215 VSEGYELLRQVLEDGLV--------PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL  286 (427)
Q Consensus       215 ~~~a~~~~~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  286 (427)
                      .++|..+++.+......        .....+..+...+...|++++|.+.+++..+..+. +...+..+...|.+.|+++
T Consensus       434 ~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P~-~~~~~~~LA~~~~~~G~~~  512 (1157)
T PRK11447        434 PEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDPG-SVWLTYRLAQDLRQAGQRS  512 (1157)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence            78888887765432110        01224556677888899999999999999887533 5667788899999999999


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------------------------
Q 045814          287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK---------------------------------  333 (427)
Q Consensus       287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------------------------  333 (427)
                      +|...++++.+.... +...+..+...+...++.++|...++.+...                                 
T Consensus       513 ~A~~~l~~al~~~P~-~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~e  591 (1157)
T PRK11447        513 QADALMRRLAQQKPN-DPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAE  591 (1157)
T ss_pred             HHHHHHHHHHHcCCC-CHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHH
Confidence            999999999875332 3333333333344445555554444432111                                 


Q ss_pred             ------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814          334 ------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR  407 (427)
Q Consensus       334 ------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  407 (427)
                            ..+.+...+..+...+.+.|++++|...|+...+.. +.+...+..+...|...|++++|.+.++...+.  .|
T Consensus       592 A~~~l~~~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~--~p  668 (1157)
T PRK11447        592 AEALLRQQPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPAT--AN  668 (1157)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CC
Confidence                  112344556677778888899999999999888763 336778888889999999999999999987764  33


Q ss_pred             -CHhHHHHHHHHHHhcCCCC
Q 045814          408 -DVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       408 -~~~~~~~li~~~~~~g~~~  426 (427)
                       +..++..+..++...|+++
T Consensus       669 ~~~~~~~~la~~~~~~g~~~  688 (1157)
T PRK11447        669 DSLNTQRRVALAWAALGDTA  688 (1157)
T ss_pred             CChHHHHHHHHHHHhCCCHH
Confidence             3455666777777777764

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.73  E-value=1.7e-13  Score=137.87  Aligned_cols=343  Identities=10%  Similarity=-0.025  Sum_probs=208.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcC
Q 045814           75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESG  152 (427)
Q Consensus        75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~  152 (427)
                      .+...+...+++..|.++++.+...  -+.+...+..+...+.+.|++++|...+++. ...| +.. +..+..++...|
T Consensus        54 ~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g  130 (765)
T PRK10049         54 AVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAG  130 (765)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCC
Confidence            3445677889999999999998654  2345677788888999999999999999883 3344 455 888889999999


Q ss_pred             ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc------------chhHHHHH-----hcCCh
Q 045814          153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES------------GYLIQAFC-----NDGKV  215 (427)
Q Consensus       153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------------~~l~~~~~-----~~g~~  215 (427)
                      +.++|+..++++.+.... +...+..+..++...+..+.|...++.+...            ...+....     ..+++
T Consensus       131 ~~~~Al~~l~~al~~~P~-~~~~~~~la~~l~~~~~~e~Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~  209 (765)
T PRK10049        131 RHWDELRAMTQALPRAPQ-TQQYPTEYVQALRNNRLSAPALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERY  209 (765)
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCChHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHH
Confidence            999999999999987554 5666667777888888888788777654431            01111111     11222


Q ss_pred             ---hHHHHHHHHHHHC-CCCCCHH-HH----HHHHHHHHccCChhHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCCh
Q 045814          216 ---SEGYELLRQVLED-GLVPENT-AF----NKLISRFCEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       216 ---~~a~~~~~~~~~~-~~~~~~~-~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~  285 (427)
                         ++|++.++.+... ...|+.. .+    ...+..+...|++++|+..|+.+.+.+.. |+. .-..+...|...|++
T Consensus       210 ~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~  288 (765)
T PRK10049        210 AIADRALAQYDALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQP  288 (765)
T ss_pred             HHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCc
Confidence               5566666666543 1122211 11    11122334556677777777776665421 221 112235566667777


Q ss_pred             HHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-----------CCCH---HHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL-----------LPNE---YTYNSMIHG  348 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-----------~p~~---~~~~~li~~  348 (427)
                      ++|+.+|+++.+.....   ....+..+..++.+.|++++|..+++.+.....           .|+.   ..+..+...
T Consensus       289 e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~  368 (765)
T PRK10049        289 EKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQV  368 (765)
T ss_pred             HHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHH
Confidence            77777777665442111   012344455566667777777777776665421           1221   233445556


Q ss_pred             HhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCC
Q 045814          349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKI  425 (427)
Q Consensus       349 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  425 (427)
                      +...|++++|+++++++.... +-+...+..+...+...|++++|++.+++....  .|+ ...+......+...|++
T Consensus       369 l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l--~Pd~~~l~~~~a~~al~~~~~  443 (765)
T PRK10049        369 AKYSNDLPQAEMRARELAYNA-PGNQGLRIDYASVLQARGWPRAAENELKKAEVL--EPRNINLEVEQAWTALDLQEW  443 (765)
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh--CCCChHHHHHHHHHHHHhCCH
Confidence            666677777777777766542 234566666666666777777777777766654  343 34444444455555544

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.66  E-value=9.3e-12  Score=123.57  Aligned_cols=341  Identities=9%  Similarity=-0.017  Sum_probs=215.9

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHH
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A  157 (427)
                      ++...+++..|+++++.+.+.  .+-++..+..++..+.+.++.++|++.+++ ....|+...+-.++..+...++..+|
T Consensus       111 ly~~~gdyd~Aiely~kaL~~--dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~A  188 (822)
T PRK14574        111 AYRNEKRWDQALALWQSSLKK--DPTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDA  188 (822)
T ss_pred             HHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHH
Confidence            555668888888888888654  233456666777788888888888888887 34556655564454555455666668


Q ss_pred             HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------h---hHHHH-----HhcCC---h
Q 045814          158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------Y---LIQAF-----CNDGK---V  215 (427)
Q Consensus       158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~---l~~~~-----~~~g~---~  215 (427)
                      ++.++++.+.... +...+..+..++.+.|-...|.++.++-...-           .   .++.-     ....+   .
T Consensus       189 L~~~ekll~~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~  267 (822)
T PRK14574        189 LQASSEAVRLAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIA  267 (822)
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHH
Confidence            8888888877533 56677777788888888777777765443220           0   11000     01111   3


Q ss_pred             hHHHHHHHHHHHC-CCCCCH-----HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814          216 SEGYELLRQVLED-GLVPEN-----TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY  289 (427)
Q Consensus       216 ~~a~~~~~~~~~~-~~~~~~-----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  289 (427)
                      +.|+.-++.+... +..|..     ...--.+-++...|+..++++.|+.+...+.+....+-..+.++|...+.+++|.
T Consensus       268 d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~  347 (822)
T PRK14574        268 DKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAA  347 (822)
T ss_pred             HHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHH
Confidence            3445555554431 222321     1222344566777788888888888887775544556777788888888888888


Q ss_pred             HHHHHHHhCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-------------CCCCH-HHHHHHHHHHh
Q 045814          290 RVFNDLKERG-----YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-------------LLPNE-YTYNSMIHGYC  350 (427)
Q Consensus       290 ~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~  350 (427)
                      .+|..+....     ..++......|..+|...+++++|..+++++.+..             ..||- ..+..++..+.
T Consensus       348 ~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~  427 (822)
T PRK14574        348 PILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLV  427 (822)
T ss_pred             HHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHH
Confidence            8888775532     12233345677778888888888888888877631             11221 23344566677


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCC
Q 045814          351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKI  425 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~  425 (427)
                      ..|++.+|++.++++.... +-|......+.+.+...|.+.+|.+.++.....  .|+ ..+......++...|++
T Consensus       428 ~~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l--~P~~~~~~~~~~~~al~l~e~  500 (822)
T PRK14574        428 ALNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESL--APRSLILERAQAETAMALQEW  500 (822)
T ss_pred             HcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhh--CCccHHHHHHHHHHHHhhhhH
Confidence            7788888888888887653 337777777778888888888888888666554  343 44555555555555544

>PRK10049 pgaA outer membrane protein PgaA; Provisional

Probab=99.66  E-value=2.3e-12  Score=129.73  Aligned_cols=332  Identities=11%  Similarity=-0.046  Sum_probs=243.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCC
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGL  153 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~  153 (427)
                      +..++...++...|+..++.+...  .+.+.. +..+..++...|++++|...+++ ....|+ ...+..+..++...+.
T Consensus        89 la~~l~~~g~~~eA~~~l~~~l~~--~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~  165 (765)
T PRK10049         89 LILTLADAGQYDEALVKAKQLVSG--APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL  165 (765)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence            334566789999999999998765  334556 88888999999999999999998 444554 5566778888889999


Q ss_pred             hhHHHHHHHHHHhcCCCcCH------hhHHHHHHHHH-----HcCCh---hHHHHHHHHHHhc---c-----h-------
Q 045814          154 IEEAFCAFSKLKEMGVFGSI------KTWNSALLGCI-----KIDRT---DLVWKLYHDLIES---G-----Y-------  204 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~---~-----~-------  204 (427)
                      .+.|++.++....   .|+.      .....++....     ..+++   ++|+..++.+.+.   +     .       
T Consensus       166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d  242 (765)
T PRK10049        166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARID  242 (765)
T ss_pred             hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHH
Confidence            9999999987654   2221      11222222222     12223   6788888888743   1     0       


Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC---CHhhHHHHHHHHH
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP---DNFTYEEVINGLC  280 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~---~~~~~~~ll~~~~  280 (427)
                      .+..+...|++++|+..|+.+...+.. |+. .-..+...|...|++++|+..|+++.+.....   .......+..++.
T Consensus       243 ~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~  321 (765)
T PRK10049        243 RLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL  321 (765)
T ss_pred             HHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence            133456789999999999999987642 332 22225678999999999999999987654221   1245666777889


Q ss_pred             hcCChHHHHHHHHHHHhCCC-----------CCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          281 KSRKRLEAYRVFNDLKERGY-----------VPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       281 ~~~~~~~a~~~~~~m~~~~~-----------~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      ..|++++|..+++.+.+...           .|+   ...+..+...+...|+.++|+..++++.... +-+...+..+.
T Consensus       322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P~n~~l~~~lA  400 (765)
T PRK10049        322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-PGNQGLRIDYA  400 (765)
T ss_pred             hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHH
Confidence            99999999999999987531           123   2245667788889999999999999998873 33577888899


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG  418 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  418 (427)
                      ..+...|++++|++.+++..+.. +-+...+-.+...+...|++++|..+++++.+.  .|+......+=..
T Consensus       401 ~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~--~Pd~~~~~~~~~~  469 (765)
T PRK10049        401 SVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR--EPQDPGVQRLARA  469 (765)
T ss_pred             HHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence            99999999999999999998863 224667777778899999999999999999985  5655544444333

>PRK14574 hmsH outer membrane protein; Provisional

Probab=99.66  E-value=4.8e-12  Score=125.57  Aligned_cols=338  Identities=8%  Similarity=0.042  Sum_probs=242.5

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHhcCCCCC-HHhHHHH--HHHHHhcCCh
Q 045814           80 LKQQNNVLLSIRFFQWLHSHYGFSPDL--VSCNVLFDSLVEARAFKVAMDFLDSTGFSPN-PNSLELY--IQCLCESGLI  154 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~l--i~~~~~~~~~  154 (427)
                      ..+.+++..|+..|+.+.+.   .|+.  ..+ .++..+...|+.++|+..+++.- .|+ ...+..+  ...|...|++
T Consensus        44 ~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~gdy  118 (822)
T PRK14574         44 RARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNEKRW  118 (822)
T ss_pred             HHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHcCCH
Confidence            44778899999999888653   4543  233 78888888899999999998865 443 2333333  5578888999


Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-----hHHHHH--hcCChhHHHHHHHHHHH
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----LIQAFC--NDGKVSEGYELLRQVLE  227 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----l~~~~~--~~g~~~~a~~~~~~~~~  227 (427)
                      ++|+++|+++.+.... +...+..++..+...++.++|++.++.+.....     +..++.  ..++..+|++.++++.+
T Consensus       119 d~Aiely~kaL~~dP~-n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~  197 (822)
T PRK14574        119 DQALALWQSSLKKDPT-NPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR  197 (822)
T ss_pred             HHHHHHHHHHHhhCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            9999999999887655 567777888888999999999999988877632     233333  35556568999999888


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHH------------------------------------------------HH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELL------------------------------------------------HT  259 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~------------------------------------------------~~  259 (427)
                      ..+. +...+..+..++.+.|-...|.++.                                                +.
T Consensus       198 ~~P~-n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~  276 (822)
T PRK14574        198 LAPT-SEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQN  276 (822)
T ss_pred             hCCC-CHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHH
Confidence            7543 5555565655555555443333332                                                22


Q ss_pred             HhhC-CCCCCH-h----hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          260 MVAR-NRAPDN-F----TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       260 m~~~-~~~~~~-~----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      +... +..|.. .    ..--.+-++.+.|++.++++.|+.+...|.+....+-..+.++|...+++++|+.+|+.+...
T Consensus       277 l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~  356 (822)
T PRK14574        277 LLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYS  356 (822)
T ss_pred             HHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc
Confidence            2221 122322 1    222345677889999999999999998886545557788999999999999999999999765


Q ss_pred             C-----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-------------CCCCh-hhHHHHHHHHHhcCCHHHHH
Q 045814          334 G-----LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-------------YGETT-VTYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       334 ~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-------------~~p~~-~~~~~li~~~~~~g~~~~A~  394 (427)
                      .     ..++......|.-+|...+++++|..+++.+.+.-             ..||- ..+..++..+...|+..+|.
T Consensus       357 ~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae  436 (822)
T PRK14574        357 DGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQ  436 (822)
T ss_pred             cccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHH
Confidence            3     12344446788999999999999999999998731             11222 34455677889999999999


Q ss_pred             HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       395 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                      +.++++...... |......+.+.+...|..
T Consensus       437 ~~le~l~~~aP~-n~~l~~~~A~v~~~Rg~p  466 (822)
T PRK14574        437 KKLEDLSSTAPA-NQNLRIALASIYLARDLP  466 (822)
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHhcCCH
Confidence            999999876433 777888887777776654

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.62  E-value=1.5e-12  Score=113.71  Aligned_cols=308  Identities=13%  Similarity=0.170  Sum_probs=195.1

Q ss_pred             CCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH
Q 045814          103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA  179 (427)
Q Consensus       103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l  179 (427)
                      +.+..+|..+|.++++-...+.|.+++++.   ..+.+..+||.+|.+-.-    ....++..+|....+.||..|+|++
T Consensus       204 PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~----~~~K~Lv~EMisqkm~Pnl~TfNal  279 (625)
T KOG4422|consen  204 PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSY----SVGKKLVAEMISQKMTPNLFTFNAL  279 (625)
T ss_pred             CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHh----hccHHHHHHHHHhhcCCchHhHHHH
Confidence            457789999999999999999999999874   446788999999876432    2237889999999999999999999


Q ss_pred             HHHHHHcCChhHHH----HHHHHHHhcch---------hHHHHHhcCChhH-HHHHHHHHHH----CCCCC----CHHHH
Q 045814          180 LLGCIKIDRTDLVW----KLYHDLIESGY---------LIQAFCNDGKVSE-GYELLRQVLE----DGLVP----ENTAF  237 (427)
Q Consensus       180 l~~~~~~~~~~~a~----~~~~~~~~~~~---------l~~~~~~~g~~~~-a~~~~~~~~~----~~~~~----~~~~~  237 (427)
                      +.+..+.|+++.|.    +++.+|.+.|+         ++..+++.++..+ +..++.++..    ..++|    |..-|
T Consensus       280 L~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF  359 (625)
T KOG4422|consen  280 LSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFF  359 (625)
T ss_pred             HHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHH
Confidence            99999999887654    44455555442         5556666655533 3333333322    12222    34455


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCC----CCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVARN----RAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV  310 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~~----~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  310 (427)
                      ...++.|.+..+.+-|.++..-+....    +.|+   ..-|..+....|+....+.-...|+.|.-.-.-|+..+...+
T Consensus       360 ~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~  439 (625)
T KOG4422|consen  360 QSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL  439 (625)
T ss_pred             HHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence            666666666666666666655443321    1222   123455666666777777777777777666566677777777


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-CH--------HH-----HHHHH-------HHHHHCC
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-NL--------EE-----AKRLH-------KEMLDKG  369 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~--------~~-----a~~~~-------~~m~~~~  369 (427)
                      +++..-.|+++-.-++|.+++..|...+...-.-++.-+++.. +.        ..     |..++       .+|.+  
T Consensus       440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~--  517 (625)
T KOG4422|consen  440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA--  517 (625)
T ss_pred             HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence            7777777788888888888877765544444444444444333 11        00     11111       12222  


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCCHhHHHHHH
Q 045814          370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRDVITYNTLI  416 (427)
Q Consensus       370 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~li  416 (427)
                      ........+.+.-.+.+.|+.++|.++|.-+.++|- .|-....++++
T Consensus       518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~  565 (625)
T KOG4422|consen  518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMA  565 (625)
T ss_pred             ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHH
Confidence            223444556666677788888888888888855532 33334444443

>TIGR00540 hemY_coli hemY protein

Probab=99.60  E-value=5.4e-12  Score=117.96  Aligned_cols=280  Identities=10%  Similarity=-0.024  Sum_probs=186.2

Q ss_pred             HcCChHHHHHHHHhc-CCCCCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHH
Q 045814          118 EARAFKVAMDFLDST-GFSPNPNS-LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL  195 (427)
Q Consensus       118 ~~~~~~~a~~~~~~~-~~~~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  195 (427)
                      ..|+++.|.+.+.+. ...|++.. +-....+..+.|+.+.|.+.+.+..+....+.....-.....+...|+++.|...
T Consensus        96 ~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al~~  175 (409)
T TIGR00540        96 AEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAARHG  175 (409)
T ss_pred             hCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHHHH
Confidence            457777777777652 33444332 3333556666777777777777766543222222333346666677777777777


Q ss_pred             HHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHH---HccCChhHHHHHHHHHhhC
Q 045814          196 YHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN-KLISRF---CEKKNFGRVSELLHTMVAR  263 (427)
Q Consensus       196 ~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~---~~~~~~~~a~~~~~~m~~~  263 (427)
                      ++.+.+.+        .+...+...|++++|.+.+..+.+.+.. +...+. .-..++   ...+..+++.+.+..+.+.
T Consensus       176 l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~-~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~  254 (409)
T TIGR00540       176 VDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF-DDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKN  254 (409)
T ss_pred             HHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHH
Confidence            77777663        3667777888888888888888877654 333232 111111   2223333334455555444


Q ss_pred             CC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814          264 NR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM---YTTVIHGLCKMGWLGDARKMWFEMIHKGLLP  337 (427)
Q Consensus       264 ~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  337 (427)
                      ..   +.+...+..+...+...|+.++|.+++++..+..  ||...   ...........++.+.+.+.+++..+.  .|
T Consensus       255 ~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~--~p  330 (409)
T TIGR00540       255 QPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKN--VD  330 (409)
T ss_pred             CCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHh--CC
Confidence            22   1377888889999999999999999999998864  34332   122222334457788899999888776  33


Q ss_pred             C-H--HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          338 N-E--YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       338 ~-~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      + .  ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++...
T Consensus       331 ~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       331 DKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             CChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            3 3  556688889999999999999999644444568998899999999999999999999998644

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.60  E-value=6.4e-12  Score=116.83  Aligned_cols=274  Identities=11%  Similarity=0.044  Sum_probs=195.6

Q ss_pred             cCChHHHHHHHHhcCCC-CCHHh-HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHH--HHHHHHHHcCChhHHHH
Q 045814          119 ARAFKVAMDFLDSTGFS-PNPNS-LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN--SALLGCIKIDRTDLVWK  194 (427)
Q Consensus       119 ~~~~~~a~~~~~~~~~~-~~~~~-~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~--~ll~~~~~~~~~~~a~~  194 (427)
                      .|+++.|.+.+.+.... +++.. |-....+..+.|+++.|.+.|.++.+.  .|+...+.  .....+...|+++.|..
T Consensus        97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~  174 (398)
T PRK10747         97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH  174 (398)
T ss_pred             CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence            57888888777763222 22232 222234446778888888888887664  34433322  33557777888888888


Q ss_pred             HHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChhHHHHHHHH
Q 045814          195 LYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-------TAFNKLISRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       195 ~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~  259 (427)
                      .++.+.+.+        .+...|.+.|++++|.+++..+.+.+..++.       .+|..++.......+.+...++++.
T Consensus       175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~  254 (398)
T PRK10747        175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN  254 (398)
T ss_pred             HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence            887777663        3677788888888888888888876655322       1333444444445556666667666


Q ss_pred             HhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 045814          260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE  339 (427)
Q Consensus       260 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  339 (427)
                      +.+. .+.+......+...+...|+.++|.+++++..+.  .|+..  -.++.+....++.+++.+..+...+.. +-|.
T Consensus       255 lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~-P~~~  328 (398)
T PRK10747        255 QSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQH-GDTP  328 (398)
T ss_pred             CCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhC-CCCH
Confidence            5443 2446778888999999999999999999998875  34442  223445556699999999999988773 2356


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..+..+...|.+.|++++|.+.|+...+.  .|+...|..+...+.+.|+.++|.+++++-..
T Consensus       329 ~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        329 LLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            66788889999999999999999999875  68999999999999999999999999987754

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.60  E-value=6.6e-11  Score=119.99  Aligned_cols=313  Identities=10%  Similarity=-0.024  Sum_probs=208.3

Q ss_pred             HHhcCChHHHHHHHHHHhh-cCCCCCCHhhHHHHHHHHHHcCC---hHHHHHHHH-------------------------
Q 045814           80 LKQQNNVLLSIRFFQWLHS-HYGFSPDLVSCNVLFDSLVEARA---FKVAMDFLD-------------------------  130 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~~ll~~~~~~~~---~~~a~~~~~-------------------------  130 (427)
                      +-..++...|.++++.... +..-.++....+.++..|.+.+.   ..++..+..                         
T Consensus       386 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  465 (987)
T PRK09782        386 LMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQLPGIADNCPAIV  465 (987)
T ss_pred             HHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhhhhhhhhHHHHH
Confidence            3356788889899888855 33344566667788888888766   333333311                         


Q ss_pred             h-cCC-CC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---
Q 045814          131 S-TGF-SP--NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---  203 (427)
Q Consensus       131 ~-~~~-~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---  203 (427)
                      . .+. ++  +...|..+..++.. +++++|...|.+....  .|+......+...+...|++++|...|+.+....   
T Consensus       466 ~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~  542 (987)
T PRK09782        466 RLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSN  542 (987)
T ss_pred             HhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCc
Confidence            1 122 23  45677777777766 7888888877777654  3555444344455567888888888888766531   


Q ss_pred             ----hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH
Q 045814          204 ----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL  279 (427)
Q Consensus       204 ----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~  279 (427)
                          .+...+.+.|+.++|...+++....... +...+..+.....+.|++++|...+++..+..  |+...+..+...+
T Consensus       543 ~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~-~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l  619 (987)
T PRK09782        543 EDLLAAANTAQAAGNGAARDRWLQQAEQRGLG-DNALYWWLHAQRYIPGQPELALNDLTRSLNIA--PSANAYVARATIY  619 (987)
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CCHHHHHHHHHHH
Confidence                2445667788888888888888765422 22333333334445588888888888887663  4566777888888


Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK  359 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  359 (427)
                      .+.|++++|+..|++..+.... +...++.+..++...|+.++|+..+++..+... -+...+..+..++...|++++|+
T Consensus       620 ~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~  697 (987)
T PRK09782        620 RQRHNVPAAVSDLRAALELEPN-NSNYQAALGYALWDSGDIAQSREMLERAHKGLP-DDPALIRQLAYVNQRLDDMAATQ  697 (987)
T ss_pred             HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence            8888888888888888777543 556777777788888888888888888877632 24567777888888888888888


Q ss_pred             HHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          360 RLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       360 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..+++..+..  |+ ..+.-.......+..+++.|.+-+++.-.
T Consensus       698 ~~l~~Al~l~--P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~  739 (987)
T PRK09782        698 HYARLVIDDI--DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT  739 (987)
T ss_pred             HHHHHHHhcC--CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence            8888887653  33 24444445555555666666665555443

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.60  E-value=4.8e-12  Score=106.86  Aligned_cols=283  Identities=10%  Similarity=0.071  Sum_probs=197.9

Q ss_pred             cCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcC---HhhHHHHHHHHHHcCChhHHH
Q 045814          119 ARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGS---IKTWNSALLGCIKIDRTDLVW  193 (427)
Q Consensus       119 ~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~---~~~~~~ll~~~~~~~~~~~a~  193 (427)
                      +++.++|.++|-++ ...| +.++.-+|...|.+.|..+.|+++.+.+.+.--.+.   ....-.|..-|...|-+|.|+
T Consensus        48 s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          48 SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            56788888888774 3233 345667788889999999999999988886421111   123445666788888899999


Q ss_pred             HHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHccCChhHHHHHHHHHh
Q 045814          194 KLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN----TAFNKLISRFCEKKNFGRVSELLHTMV  261 (427)
Q Consensus       194 ~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~  261 (427)
                      .+|..+.+.+        .|+..|-...+|++|+++-+++...+..+..    .-|.-|...+....+.++|..++.+..
T Consensus       128 ~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kAl  207 (389)
T COG2956         128 DIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKAL  207 (389)
T ss_pred             HHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHH
Confidence            9998888753        3788888888999999988888877655432    234455555556778888888888888


Q ss_pred             hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814          262 ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT  341 (427)
Q Consensus       262 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  341 (427)
                      +.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|.+.|+.++....+..+.+....+  ..
T Consensus       208 qa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~--~~  284 (389)
T COG2956         208 QADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGA--DA  284 (389)
T ss_pred             hhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCc--cH
Confidence            77533 4445556667888889999999999988887554445577788888889999999888888888764333  33


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCC
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL---HGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~  406 (427)
                      -..+-..-....-.+.|..++.+-...  +|+...+..+|..-..   .|...+-+.++++|...-++
T Consensus       285 ~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mvge~l~  350 (389)
T COG2956         285 ELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMVGEQLR  350 (389)
T ss_pred             HHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHHHHHHh
Confidence            344444334444555666555544443  4888888888876543   35567777778888765443

>KOG4422 consensus Uncharacterized conserved protein [Function unknown]

Probab=99.59  E-value=9.5e-12  Score=108.89  Aligned_cols=309  Identities=13%  Similarity=0.190  Sum_probs=214.3

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH--cCChHH-HHHHHHhc---C-------------------CCCC
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE--ARAFKV-AMDFLDST---G-------------------FSPN  137 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~--~~~~~~-a~~~~~~~---~-------------------~~~~  137 (427)
                      .+....+.-+++.|+ +.|+..+...--.|++..+-  +.++.- -++.|-.+   |                   .+.+
T Consensus       128 ~~EvKDs~ilY~~m~-~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~vAdL~~E~~PKT  206 (625)
T KOG4422|consen  128 SREVKDSCILYERMR-SENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAVADLLFETLPKT  206 (625)
T ss_pred             hcccchhHHHHHHHH-hcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccHHHHHHhhcCCC
Confidence            456677777888884 34666666655555544332  222211 12222111   1                   1223


Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      ..++..+|.++|+--..+.|.++|++-.....+.+..+||.+|.+-.                              +..
T Consensus       207 ~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S------------------------------~~~  256 (625)
T KOG4422|consen  207 DETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASS------------------------------YSV  256 (625)
T ss_pred             chhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHH------------------------------hhc
Confidence            44555666666666556666666665555555555555555554322                              222


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh----HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH-HHHHH
Q 045814          218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG----RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE-AYRVF  292 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~----~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~-a~~~~  292 (427)
                      ..+++.+|......||..|+|+++++..+.|+++    .|.+++.+|++-|++|...+|..+|..+++.+++.+ |..++
T Consensus       257 ~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i  336 (625)
T KOG4422|consen  257 GKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWI  336 (625)
T ss_pred             cHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHH
Confidence            3677888999999999999999999999999866    467788999999999999999999999999998855 44444


Q ss_pred             HHHH----hCCCCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC---HHHHHHHHHHHhhcCCHHH
Q 045814          293 NDLK----ERGYVP----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLPN---EYTYNSMIHGYCRIDNLEE  357 (427)
Q Consensus       293 ~~m~----~~~~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~---~~~~~~li~~~~~~g~~~~  357 (427)
                      .++.    .+.++|    |...|...+..|.+..+.+-|.++..-+....    +.|+   ..-|..+....|+....+.
T Consensus       337 ~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~  416 (625)
T KOG4422|consen  337 NDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDV  416 (625)
T ss_pred             HHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4443    333333    45567888889999999999998876655331    2233   2245677788888889999


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 045814          358 AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE  422 (427)
Q Consensus       358 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  422 (427)
                      -...|+.|.-.-+.|+..+...++++....|.++-.-+++.++...|...+...-..++.-+|+.
T Consensus       417 ~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~  481 (625)
T KOG4422|consen  417 TLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARD  481 (625)
T ss_pred             HHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcC
Confidence            99999999988888999999999999999999999999999999888665555555555555543

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.57  E-value=1.9e-14  Score=127.77  Aligned_cols=259  Identities=15%  Similarity=0.168  Sum_probs=106.4

Q ss_pred             HHHHHHHHcCChHHHHHHHHh-c-CC-CC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc
Q 045814          111 VLFDSLVEARAFKVAMDFLDS-T-GF-SP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI  186 (427)
Q Consensus       111 ~ll~~~~~~~~~~~a~~~~~~-~-~~-~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~  186 (427)
                      .+...+.+.|++++|++++++ . .. .| +...|..+.......++++.|.+.|+++...+.. +...+..++.. ...
T Consensus        13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~   90 (280)
T PF13429_consen   13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQD   90 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccc
Confidence            457777788888888888854 2 22 23 3445566666777788888888888888776544 44455555444 344


Q ss_pred             CChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC-C
Q 045814          187 DRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN-R  265 (427)
Q Consensus       187 ~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~  265 (427)
                      +                          ++++|.+++....+..  ++...+..++..+.+.++++++.++++.+.... .
T Consensus        91 ~--------------------------~~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~  142 (280)
T PF13429_consen   91 G--------------------------DPEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAA  142 (280)
T ss_dssp             -------------------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T--
T ss_pred             c--------------------------cccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCC
Confidence            4                          4445555444443322  355567778888888899999999988876543 2


Q ss_pred             CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814          266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM  345 (427)
Q Consensus       266 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  345 (427)
                      +.+...|..+...+.+.|+.++|.+.+++..+..+. |....+.++..+...|+.+++..+++...+.. +.|...+..+
T Consensus       143 ~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~l  220 (280)
T PF13429_consen  143 PDSARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDAL  220 (280)
T ss_dssp             -T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHH
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHH
Confidence            456677888888888999999999999998887433 56778888888888999988888888877764 3455677888


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..+|...|+.++|..++++..+.. +.|+.....+..++...|+.++|.++.++..+
T Consensus       221 a~~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  221 AAAYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred             HHHhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            888899999999999999988753 33788888888999999999999988876643

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.57  E-value=9.7e-11  Score=103.68  Aligned_cols=270  Identities=14%  Similarity=0.067  Sum_probs=188.7

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------------------
Q 045814          147 CLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------------------  203 (427)
Q Consensus       147 ~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------  203 (427)
                      ++......+++.+-.+.....|..-+...-+....+.-...+++.|+.+|+++.+..                       
T Consensus       236 a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skL  315 (559)
T KOG1155|consen  236 AYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKL  315 (559)
T ss_pred             HHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHH
Confidence            344444555555555555555555444444444444445556666666666665541                       


Q ss_pred             -------------------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814          204 -------------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN  264 (427)
Q Consensus       204 -------------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  264 (427)
                                         ++.+-|.-.++.++|...|++..+.+.. ....|+.+.+-|...++...|.+-+...++-+
T Consensus       316 s~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~  394 (559)
T KOG1155|consen  316 SYLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN  394 (559)
T ss_pred             HHHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC
Confidence                               2566677778888888899888887655 56778888888888888888888888888775


Q ss_pred             CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814          265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS  344 (427)
Q Consensus       265 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  344 (427)
                       +.|-..|-.|.++|.-.+.+.-|+-.|++..+.... |...|.+|..+|.+.++.++|++-|......|-. +...+..
T Consensus       395 -p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~  471 (559)
T KOG1155|consen  395 -PRDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVR  471 (559)
T ss_pred             -chhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHH
Confidence             347788888888888888888888888888876443 7788888999999999999999998888887643 5678888


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHC----CCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814          345 MIHGYCRIDNLEEAKRLHKEMLDK----GYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG  418 (427)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  418 (427)
                      +.+.|-+.++.++|.+.|+..++.    |..-+  ....--|..-+.+.+++++|..+......-  .+...--..|++.
T Consensus       472 LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Ya~~~~~~--~~e~eeak~LlRe  549 (559)
T KOG1155|consen  472 LAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYYATLVLKG--ETECEEAKALLRE  549 (559)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence            888888888888888888776652    33222  122222445667788888887766665542  5555566666666


Q ss_pred             HHhc
Q 045814          419 YCKE  422 (427)
Q Consensus       419 ~~~~  422 (427)
                      +.+.
T Consensus       550 ir~~  553 (559)
T KOG1155|consen  550 IRKI  553 (559)
T ss_pred             HHHh
Confidence            5543

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.57  E-value=5.5e-11  Score=113.28  Aligned_cols=343  Identities=12%  Similarity=0.061  Sum_probs=262.6

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCC-CCCHHhHHHHHHHHHhcCChhH
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGF-SPNPNSLELYIQCLCESGLIEE  156 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~  156 (427)
                      .+-.+++.+.|.+++..+.++  .+.+...|..|..+|-..|+.+++...+-. ... +.|...|..+.....+.|+++.
T Consensus       148 ~lfarg~~eeA~~i~~EvIkq--dp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~q  225 (895)
T KOG2076|consen  148 NLFARGDLEEAEEILMEVIKQ--DPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQ  225 (895)
T ss_pred             HHHHhCCHHHHHHHHHHHHHh--CccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHH
Confidence            344579999999999999886  456788999999999999999999876543 222 3466899999999999999999


Q ss_pred             HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-------------hHHHHHhcCChhHHHHHHH
Q 045814          157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-------------LIQAFCNDGKVSEGYELLR  223 (427)
Q Consensus       157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-------------l~~~~~~~g~~~~a~~~~~  223 (427)
                      |.-+|.+..+.... +...+--=...|-+.|+...|...|.++.....             .+..+...++-+.|.+.++
T Consensus       226 A~~cy~rAI~~~p~-n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le  304 (895)
T KOG2076|consen  226 ARYCYSRAIQANPS-NWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALE  304 (895)
T ss_pred             HHHHHHHHHhcCCc-chHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence            99999999987544 555555567789999999999999999987642             5677778888899999988


Q ss_pred             HHHHC-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC---------------------------CCHhhHHHH
Q 045814          224 QVLED-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA---------------------------PDNFTYEEV  275 (427)
Q Consensus       224 ~~~~~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~---------------------------~~~~~~~~l  275 (427)
                      ..... +-..+...++.++..+.+...++.|......+.....+                           ++..+ -.+
T Consensus       305 ~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl  383 (895)
T KOG2076|consen  305 GALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRL  383 (895)
T ss_pred             HHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhH
Confidence            87762 22346678899999999999999999988887762111                           12222 112


Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCC--CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814          276 INGLCKSRKRLEAYRVFNDLKERG--YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       276 l~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  353 (427)
                      +-++......+....+...+.+..  +.-+...|.-+..+|...|++.+|+.++..+......-+...|-.+..+|-..|
T Consensus       384 ~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~  463 (895)
T KOG2076|consen  384 MICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELG  463 (895)
T ss_pred             hhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHh
Confidence            223334444444555555555554  333566888899999999999999999999998766667788999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH--------HCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA--------QKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~--------~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                      ..++|.+.|+..+... +-+...--+|-..+-+.|+.++|.+.+..|.        ..+..|+........+.+...|+.
T Consensus       464 e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~  542 (895)
T KOG2076|consen  464 EYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKR  542 (895)
T ss_pred             hHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhH
Confidence            9999999999999862 1234444556677889999999999999954        335667777777777777777775


Q ss_pred             C
Q 045814          426 V  426 (427)
Q Consensus       426 ~  426 (427)
                      +
T Consensus       543 E  543 (895)
T KOG2076|consen  543 E  543 (895)
T ss_pred             H
Confidence            4

>PRK10747 putative protoheme IX biogenesis protein; Provisional

Probab=99.54  E-value=4.4e-11  Score=111.28  Aligned_cols=273  Identities=11%  Similarity=0.062  Sum_probs=210.2

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHH-HHHHHHcCChHHHHHHHHhc-CCCCCHHhHH--HHHHHHHhcCChhHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVL-FDSLVEARAFKVAMDFLDST-GFSPNPNSLE--LYIQCLCESGLIEEAF  158 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~--~li~~~~~~~~~~~A~  158 (427)
                      .+++..|.+........   .+++..+-.+ ..+..+.|+++.|.+.+.++ ...|+.....  .....+...|+++.|.
T Consensus        97 eGd~~~A~k~l~~~~~~---~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al  173 (398)
T PRK10747         97 EGDYQQVEKLMTRNADH---AEQPVVNYLLAAEAAQQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAAR  173 (398)
T ss_pred             CCCHHHHHHHHHHHHhc---ccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHH
Confidence            58999999887766433   2233333333 45558999999999999884 4456654333  3467889999999999


Q ss_pred             HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh----------------HHHHHhcCChhHHHHHH
Q 045814          159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL----------------IQAFCNDGKVSEGYELL  222 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l----------------~~~~~~~g~~~~a~~~~  222 (427)
                      +.++++.+.... +......+...|.+.|++++|.+++..+.+.+.+                +.......+.+...+++
T Consensus       174 ~~l~~~~~~~P~-~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w  252 (398)
T PRK10747        174 HGVDKLLEVAPR-HPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWW  252 (398)
T ss_pred             HHHHHHHhcCCC-CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            999999988655 7888999999999999999999999999976432                11112233344555555


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 045814          223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP  302 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p  302 (427)
                      +.+.+. ...++.....+...+...|+.++|.+++++..+.  .+|..  -.++.+....++.+++.+..+...+.... 
T Consensus       253 ~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~--l~~l~~~l~~~~~~~al~~~e~~lk~~P~-  326 (398)
T PRK10747        253 KNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDER--LVLLIPRLKTNNPEQLEKVLRQQIKQHGD-  326 (398)
T ss_pred             HhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHH--HHHHHhhccCCChHHHHHHHHHHHhhCCC-
Confidence            554332 2347778889999999999999999999998875  34442  22344555669999999999999887543 


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      |...+..+...|.+.+++++|.+.|+.+.+.  .|+..++..+...+.+.|+.++|.+++++-..
T Consensus       327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~l~  389 (398)
T PRK10747        327 TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDGLM  389 (398)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            6667889999999999999999999999986  68999999999999999999999999998754

>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B

Probab=99.54  E-value=8.6e-14  Score=123.61  Aligned_cols=260  Identities=15%  Similarity=0.088  Sum_probs=102.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCC
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGL  153 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~  153 (427)
                      +..++-..++++.|+++++....+.--..|...|..+.......++++.|...++++ ...+ ++..+..++.. ...++
T Consensus        14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~~~~~~~~l~~l-~~~~~   92 (280)
T PF13429_consen   14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKANPQDYERLIQL-LQDGD   92 (280)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccc
Confidence            345566789999999999654333111334555666666777889999999999984 2222 45567777777 78999


Q ss_pred             hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC-CCCC
Q 045814          154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED-GLVP  232 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~~  232 (427)
                      +++|.+++....+..  ++...+..++..+...++++++..++                          +.+... ....
T Consensus        93 ~~~A~~~~~~~~~~~--~~~~~l~~~l~~~~~~~~~~~~~~~l--------------------------~~~~~~~~~~~  144 (280)
T PF13429_consen   93 PEEALKLAEKAYERD--GDPRYLLSALQLYYRLGDYDEAEELL--------------------------EKLEELPAAPD  144 (280)
T ss_dssp             ---------------------------H-HHHTT-HHHHHHHH--------------------------HHHHH-T---T
T ss_pred             ccccccccccccccc--cccchhhHHHHHHHHHhHHHHHHHHH--------------------------HHHHhccCCCC
Confidence            999999998776543  45556666666666655555555544                          443332 2345


Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      +...|..+...+.+.|+.++|.+.+++..+..+. |......++..+...|+.+++..++....+.. ..|...+..+..
T Consensus       145 ~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~P~-~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~  222 (280)
T PF13429_consen  145 SARFWLALAEIYEQLGDPDKALRDYRKALELDPD-DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAA  222 (280)
T ss_dssp             -HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH-TT--HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence            7778888889999999999999999999887432 56778888999999999999888888887664 336667888999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +|...|+.++|..++++..+.. +.|......+..++...|+.++|.++..+..+
T Consensus       223 ~~~~lg~~~~Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~  276 (280)
T PF13429_consen  223 AYLQLGRYEEALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQALR  276 (280)
T ss_dssp             HHHHHT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHT-----------------
T ss_pred             Hhcccccccccccccccccccc-cccccccccccccccccccccccccccccccc
Confidence            9999999999999999988863 33777888889999999999999998887654

>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional

Probab=99.54  E-value=5.3e-10  Score=113.56  Aligned_cols=310  Identities=9%  Similarity=-0.031  Sum_probs=228.4

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCC----CCHHhHHHHHHHHHhcCC---hh
Q 045814           84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFS----PNPNSLELYIQCLCESGL---IE  155 (427)
Q Consensus        84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~----~~~~~~~~li~~~~~~~~---~~  155 (427)
                      +....+.+.+..+.++  .+-+....-.+.-...+.|+.++|..+++.. ...    ++.....-++..|.+.+.   ..
T Consensus       356 ~~~~~~~~~~~~~y~~--~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~  433 (987)
T PRK09782        356 RNKAEALRLARLLYQQ--EPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPA  433 (987)
T ss_pred             CchhHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchH
Confidence            4555555555555443  1225566666666678999999999999873 222    233344467777777665   22


Q ss_pred             HHHHH----------------------HHHHHhc-CC-Cc--CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-----
Q 045814          156 EAFCA----------------------FSKLKEM-GV-FG--SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-----  204 (427)
Q Consensus       156 ~A~~~----------------------~~~m~~~-g~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----  204 (427)
                      ++..+                      +...... +. ++  +...|..+..++.. ++.++|...+.+......     
T Consensus       434 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~  512 (987)
T PRK09782        434 KVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQH  512 (987)
T ss_pred             HHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHH
Confidence            22222                      2222211 12 23  56778888888876 888899998877766521     


Q ss_pred             --hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 045814          205 --LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS  282 (427)
Q Consensus       205 --l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  282 (427)
                        +...+...|++++|...++++...  .|+...+..+...+.+.|+.++|...+++..+... .+...+..+.....+.
T Consensus       513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~~~~l~~~La~~l~~~  589 (987)
T PRK09782        513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGL-GDNALYWWLHAQRYIP  589 (987)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHhC
Confidence              344556899999999999998654  33445566777888999999999999999988752 2333343444455566


Q ss_pred             CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814          283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH  362 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  362 (427)
                      |++++|...+++..+..  |+...|..+..++.+.|+.++|+..+++...... .+...++.+..++...|+.++|...+
T Consensus       590 Gr~~eAl~~~~~AL~l~--P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~P-d~~~a~~nLG~aL~~~G~~eeAi~~l  666 (987)
T PRK09782        590 GQPELALNDLTRSLNIA--PSANAYVARATIYRQRHNVPAAVSDLRAALELEP-NNSNYQAALGYALWDSGDIAQSREML  666 (987)
T ss_pred             CCHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999998774  5778899999999999999999999999998742 25667888888999999999999999


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          363 KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       363 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +...+... -+...+..+..++...|++++|...|++..+.
T Consensus       667 ~~AL~l~P-~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l  706 (987)
T PRK09782        667 ERAHKGLP-DDPALIRQLAYVNQRLDDMAATQHYARLVIDD  706 (987)
T ss_pred             HHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            99998632 36788999999999999999999999999875

>TIGR00540 hemY_coli hemY protein

Probab=99.52  E-value=9.4e-11  Score=109.65  Aligned_cols=282  Identities=10%  Similarity=0.022  Sum_probs=209.1

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCCHhh-HHHHHHHHHHcCChHHHHHHHHhc-CCCCCHH--hHHHHHHHHHhcCChhH
Q 045814           81 KQQNNVLLSIRFFQWLHSHYGFSPDLVS-CNVLFDSLVEARAFKVAMDFLDST-GFSPNPN--SLELYIQCLCESGLIEE  156 (427)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~--~~~~li~~~~~~~~~~~  156 (427)
                      ...+++..|.+.+....+.   .|+... +-....+..+.|+++.|.+.+++. ...|+..  ..-+....+...|+++.
T Consensus        95 ~~~g~~~~A~~~l~~~~~~---~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~  171 (409)
T TIGR00540        95 LAEGDYAKAEKLIAKNADH---AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHA  171 (409)
T ss_pred             HhCCCHHHHHHHHHHHhhc---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHH
Confidence            3568999999999877543   455443 344467788899999999999873 3345543  34445888889999999


Q ss_pred             HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh------------HHHHHhcCChhHHHHHHHH
Q 045814          157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL------------IQAFCNDGKVSEGYELLRQ  224 (427)
Q Consensus       157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l------------~~~~~~~g~~~~a~~~~~~  224 (427)
                      |.+.++.+.+..+. +...+..+...+...|++++|.+.+..+.+.+..            .......+..+++.+.+..
T Consensus       172 Al~~l~~l~~~~P~-~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~  250 (409)
T TIGR00540       172 ARHGVDKLLEMAPR-HKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLN  250 (409)
T ss_pred             HHHHHHHHHHhCCC-CHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHH
Confidence            99999999998655 7788999999999999999999999999976431            1111222333333445555


Q ss_pred             HHHCCCC---CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhh-HHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          225 VLEDGLV---PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT-YEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       225 ~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                      +......   .+...+..+...+...|+.++|.+++++..+......... .....-.....++.+.+.+.++...+...
T Consensus       251 ~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p  330 (409)
T TIGR00540       251 WWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVD  330 (409)
T ss_pred             HHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCC
Confidence            5543321   3778889999999999999999999999998743322111 12222233446788889999988877632


Q ss_pred             CCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          301 VPDT--VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       301 ~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      . |.  ....++...+.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.++|++...
T Consensus       331 ~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l~  398 (409)
T TIGR00540       331 D-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSLG  398 (409)
T ss_pred             C-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            2 34  566688999999999999999999655555578998899999999999999999999998653

This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.

>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]

Probab=99.51  E-value=9.1e-11  Score=99.28  Aligned_cols=260  Identities=10%  Similarity=0.078  Sum_probs=135.4

Q ss_pred             CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc------------hhHHHHHhcCChhHHH
Q 045814          152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------------YLIQAFCNDGKVSEGY  219 (427)
Q Consensus       152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------~l~~~~~~~g~~~~a~  219 (427)
                      ++.++|.+.|-+|.+.... +..+--+|.+.|.+.|..|+|+++.+.+.+..            -|..-|...|-+|.|+
T Consensus        49 ~Q~dKAvdlF~e~l~~d~~-t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE  127 (389)
T COG2956          49 NQPDKAVDLFLEMLQEDPE-TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE  127 (389)
T ss_pred             cCcchHHHHHHHHHhcCch-hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            4556666666666553222 33444455666666666666666666555541            1455556666666666


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH----hhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN----FTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      ++|..+.+.+.. -......|+..|-...+|++|+++-+++.+.+..+..    ..|..+...+....+.+.|..++.+.
T Consensus       128 ~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA  206 (389)
T COG2956         128 DIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA  206 (389)
T ss_pred             HHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence            666666554322 3345555666666666666666666655555443322    23445555555556666666666666


Q ss_pred             HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh
Q 045814          296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV  375 (427)
Q Consensus       296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  375 (427)
                      .+.+.+ .+..--.+.+.+...|+++.|.+.++...+.+..--..+...|..+|...|+.++....+..+.+....++  
T Consensus       207 lqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~--  283 (389)
T COG2956         207 LQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD--  283 (389)
T ss_pred             HhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc--
Confidence            554332 33333344455556666666666666666554333344555566666666666666666666555422222  


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG  418 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  418 (427)
                      .-..+-+.-....-.+.|..++.+-..+  +|+...+..+|+.
T Consensus       284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~  324 (389)
T COG2956         284 AELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDY  324 (389)
T ss_pred             HHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHh
Confidence            2222222222233333444433333222  4566555555554

>PF13041 PPR_2: PPR repeat family

Probab=99.48  E-value=1.1e-13  Score=87.23  Aligned_cols=50  Identities=54%  Similarity=0.913  Sum_probs=43.6

Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          372 ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       372 p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                      ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++||+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k   50 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK   50 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence            78888888888888888888888888888888888888888888888875

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=3.8e-11  Score=110.86  Aligned_cols=199  Identities=12%  Similarity=0.005  Sum_probs=135.1

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      +...|.-+++.+.|++.|++.++.... ...+|+.+..-+.....+|.|...|...+..... +-..|--+.-.|.+.++
T Consensus       427 ~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~~r-hYnAwYGlG~vy~Kqek  504 (638)
T KOG1126|consen  427 LGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGVDPR-HYNAWYGLGTVYLKQEK  504 (638)
T ss_pred             hcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcCCch-hhHHHHhhhhheeccch
Confidence            444444455555555555555553322 5677777777777788888888888776544211 23345556677888888


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      ++.|+-.|++..+.+.. +.+....+...+.+.|+.++|+++++++.....+ |+.+--.-...+...+++++|.+.+++
T Consensus       505 ~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEe  582 (638)
T KOG1126|consen  505 LEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEE  582 (638)
T ss_pred             hhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHH
Confidence            88888888888776554 5666667777777888888888888888876544 333333344556677888888888888


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814          365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD  408 (427)
Q Consensus       365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  408 (427)
                      +++. ++-+...|..+...|.+.|+.+.|+.-|--+.+...+++
T Consensus       583 Lk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~  625 (638)
T KOG1126|consen  583 LKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA  625 (638)
T ss_pred             HHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence            8875 333566677777888888888888888877776544433

>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]

Probab=99.47  E-value=1.7e-11  Score=113.08  Aligned_cols=262  Identities=12%  Similarity=0.051  Sum_probs=197.6

Q ss_pred             ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHH-H
Q 045814          153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELL-R  223 (427)
Q Consensus       153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~-~  223 (427)
                      +..+|...|+++... +.-+..+...+..+|-..+++++|+++|+.+.+...        .-..+-...+ +-++..+ +
T Consensus       334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~-~v~Ls~Laq  411 (638)
T KOG1126|consen  334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD-EVALSYLAQ  411 (638)
T ss_pred             HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh-hHHHHHHHH
Confidence            467888888885554 333456777888889999999999999988877631        1111111111 1222222 2


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814          224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD  303 (427)
Q Consensus       224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~  303 (427)
                      .+.+.. +-.+.+|.++.++|.-+++.+.|++.|++.++.+.. ...+|+.+..-+.....+|.|...|+.....    |
T Consensus       412 ~Li~~~-~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~-faYayTLlGhE~~~~ee~d~a~~~fr~Al~~----~  485 (638)
T KOG1126|consen  412 DLIDTD-PNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPR-FAYAYTLLGHESIATEEFDKAMKSFRKALGV----D  485 (638)
T ss_pred             HHHhhC-CCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCc-cchhhhhcCChhhhhHHHHhHHHHHHhhhcC----C
Confidence            333332 236789999999999999999999999999887422 6789999999999999999999999998765    5


Q ss_pred             hhhHH---HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814          304 TVMYT---TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL  380 (427)
Q Consensus       304 ~~~~~---~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  380 (427)
                      +..||   -+.-.|.+.++++.|+-.|+++.+.+.. +.+....+...+-+.|+.++|++++++....+.+ |+..--..
T Consensus       486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~k-n~l~~~~~  563 (638)
T KOG1126|consen  486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPK-NPLCKYHR  563 (638)
T ss_pred             chhhHHHHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCC-CchhHHHH
Confidence            55554   4667799999999999999999987533 5667777888889999999999999999987544 55555556


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCCC
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  426 (427)
                      +..+...+++++|+..++++++.  .|+ ...|..+-..|.+.|+.+
T Consensus       564 ~~il~~~~~~~eal~~LEeLk~~--vP~es~v~~llgki~k~~~~~~  608 (638)
T KOG1126|consen  564 ASILFSLGRYVEALQELEELKEL--VPQESSVFALLGKIYKRLGNTD  608 (638)
T ss_pred             HHHHHhhcchHHHHHHHHHHHHh--CcchHHHHHHHHHHHHHHccch
Confidence            67778899999999999999985  454 566777778888887654

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.46  E-value=4.5e-10  Score=108.00  Aligned_cols=277  Identities=13%  Similarity=0.115  Sum_probs=146.8

Q ss_pred             CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc---CCCcCH------hhHHHHHHHHHHcCChhHHHHHHHHHHhcch-
Q 045814          135 SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM---GVFGSI------KTWNSALLGCIKIDRTDLVWKLYHDLIESGY-  204 (427)
Q Consensus       135 ~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~---g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-  204 (427)
                      .+.++..|.+...+...|+++.|...|...+..   ...++.      .+--.+...+...++++.|.++|..+++... 
T Consensus       449 ~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~  528 (1018)
T KOG2002|consen  449 QIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG  528 (1018)
T ss_pred             CCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch
Confidence            355555566666666666666666666655543   111122      1122234444455566666666666655432 


Q ss_pred             hHHHHHhc-------CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCHhhHHHHH
Q 045814          205 LIQAFCND-------GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVI  276 (427)
Q Consensus       205 l~~~~~~~-------g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll  276 (427)
                      .+.+|.+.       +...+|..++.......- .++..++.+...+.+..++..|.+-|....+.-. .+|..+.-.|.
T Consensus       529 YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~-~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLG  607 (1018)
T KOG2002|consen  529 YIDAYLRLGCMARDKNNLYEASLLLKDALNIDS-SNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALG  607 (1018)
T ss_pred             hHHHHHHhhHHHHhccCcHHHHHHHHHHHhccc-CCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhh
Confidence            33333333       344556566655554322 2444454455556666666666665554443321 23444444444


Q ss_pred             HHHHh------------cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814          277 NGLCK------------SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS  344 (427)
Q Consensus       277 ~~~~~------------~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  344 (427)
                      +.|.+            .+..++|+++|.+.++...+ |...-|-+...++..|++.+|..+|.+..+.... ...+|-.
T Consensus       608 N~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~dpk-N~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lN  685 (1018)
T KOG2002|consen  608 NVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRNDPK-NMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLN  685 (1018)
T ss_pred             HHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcCcc-hhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeee
Confidence            44432            22345566666666655433 5555555566666666677777777666665431 3345666


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 045814          345 MIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT  414 (427)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  414 (427)
                      +.++|..+|++..|.++|+...+. .-.-++.+.+.|.+++...|++.+|.+.+.......+.-....||.
T Consensus       686 lah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~  756 (1018)
T KOG2002|consen  686 LAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNL  756 (1018)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHH
Confidence            666666667777777766655433 2233556666666666666666666666666555433333344443

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.46  E-value=1.3e-09  Score=95.06  Aligned_cols=289  Identities=12%  Similarity=0.063  Sum_probs=219.3

Q ss_pred             HHHHHHH--cCChHHHHHHHHhcC-CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814          112 LFDSLVE--ARAFKVAMDFLDSTG-FSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID  187 (427)
Q Consensus       112 ll~~~~~--~~~~~~a~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  187 (427)
                      +.+++.+  .|+|..|++++.+.. ..+ ....|..-..+--+.|+.+.+-.++.+..+.--.++...+-+........|
T Consensus        88 ~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~  167 (400)
T COG3071          88 LNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR  167 (400)
T ss_pred             HHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence            4444443  588999998887632 122 233455666777888899999999988887644556677777778888889


Q ss_pred             ChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChhH
Q 045814          188 RTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-------TAFNKLISRFCEKKNFGR  252 (427)
Q Consensus       188 ~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~  252 (427)
                      +.+.|..-.+++.+.+        ....+|.+.|++.+...++..+.+.|.-.+.       .+|..+++-....+..+.
T Consensus       168 d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~g  247 (400)
T COG3071         168 DYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEG  247 (400)
T ss_pred             CchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchH
Confidence            9998888888887764        3678889999999999999999988876443       467777777777666666


Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      -...++....+ .+-+...-..++.-+.++|+.++|.++..+..+.+..|+    -...-.+.+-++.+.-.+..++-.+
T Consensus       248 L~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~  322 (400)
T COG3071         248 LKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK  322 (400)
T ss_pred             HHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH
Confidence            66666665443 344566777888889999999999999999998877665    2233456677888877777777665


Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814          333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD  408 (427)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  408 (427)
                      .. +-++..+.++...|.+.+.|.+|...|+...+  ..|+..+|+.+..++.+.|+..+|..+.++....-..|+
T Consensus       323 ~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~--~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~~  395 (400)
T COG3071         323 QH-PEDPLLLSTLGRLALKNKLWGKASEALEAALK--LRPSASDYAELADALDQLGEPEEAEQVRREALLLTRQPN  395 (400)
T ss_pred             hC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCCC
Confidence            52 23457888899999999999999999997766  468999999999999999999999999988775544444

>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]

Probab=99.44  E-value=1.6e-09  Score=104.29  Aligned_cols=375  Identities=11%  Similarity=0.068  Sum_probs=285.5

Q ss_pred             ccccccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHH
Q 045814           34 KESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLF  113 (427)
Q Consensus        34 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll  113 (427)
                      -+++.++......+-+.+...++..     .+|.+      -+.++.-..++...|...|+.+.++  .+-+..+.-.|.
T Consensus       317 ~Ha~Gd~ekA~~yY~~s~k~~~d~~-----~l~~~------GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG  383 (1018)
T KOG2002|consen  317 YHAQGDFEKAFKYYMESLKADNDNF-----VLPLV------GLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILG  383 (1018)
T ss_pred             HHhhccHHHHHHHHHHHHccCCCCc-----ccccc------chhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            3788999999999999998877651     12222      3466666789999999999999876  344566777777


Q ss_pred             HHHHHcC----ChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHH----hcCCCcCHhhHHHHHHHH
Q 045814          114 DSLVEAR----AFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLK----EMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       114 ~~~~~~~----~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~----~~g~~p~~~~~~~ll~~~  183 (427)
                      ..|...+    ..+.|..++.+.  ....|...|-.+...+...+-+.. +.+|....    ..+-.+.+...|.+...+
T Consensus       384 ~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslh  462 (1018)
T KOG2002|consen  384 CLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLH  462 (1018)
T ss_pred             hHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHH
Confidence            7777664    567888888773  334567788888888766554444 77776544    456567889999999999


Q ss_pred             HHcCChhHHHHHHHHHHhc---------c---------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045814          184 IKIDRTDLVWKLYHDLIES---------G---------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC  245 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~---------~---------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  245 (427)
                      ...|+++.|...|+.....         +         -+...+-..++.+.|.+.+..+....+. =+..|--+.....
T Consensus       463 f~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~-YId~ylRl~~ma~  541 (1018)
T KOG2002|consen  463 FRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPG-YIDAYLRLGCMAR  541 (1018)
T ss_pred             HHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCch-hHHHHHHhhHHHH
Confidence            9999999999999988765         1         1455556678999999999999876432 2334555554444


Q ss_pred             ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHc--------
Q 045814          246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIHGLCK--------  316 (427)
Q Consensus       246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~--------  316 (427)
                      ..+...+|...+......+ ..+...++.+.+.+.+..++..|.+-|+...+.- ..+|+.+.-+|...|.+        
T Consensus       542 ~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn  620 (1018)
T KOG2002|consen  542 DKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRN  620 (1018)
T ss_pred             hccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccC
Confidence            5678889999999887764 3466678888889999999999999888776542 22466666566665543        


Q ss_pred             ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814          317 ----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE  392 (427)
Q Consensus       317 ----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  392 (427)
                          .+..++|+++|.+.++... -|...-|-+.-.++..|++.+|..+|....+... -...+|-.+..+|...|++..
T Consensus       621 ~ek~kk~~~KAlq~y~kvL~~dp-kN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~-~~~dv~lNlah~~~e~~qy~~  698 (1018)
T KOG2002|consen  621 PEKEKKHQEKALQLYGKVLRNDP-KNMYAANGIGIVLAEKGRFSEARDIFSQVREATS-DFEDVWLNLAHCYVEQGQYRL  698 (1018)
T ss_pred             hHHHHHHHHHHHHHHHHHHhcCc-chhhhccchhhhhhhccCchHHHHHHHHHHHHHh-hCCceeeeHHHHHHHHHHHHH
Confidence                2457899999999998853 3778888888899999999999999999998743 256789999999999999999


Q ss_pred             HHHHHHHHHHC-CCCCCHhHHHHHHHHHHhcCCCC
Q 045814          393 AYHLFEEMAQK-GIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       393 A~~~~~~m~~~-g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      |+++|+...+. +-.-+......|.+++.+.|++.
T Consensus       699 AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~  733 (1018)
T KOG2002|consen  699 AIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQ  733 (1018)
T ss_pred             HHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHH
Confidence            99999876665 55667889999999999998764

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.41  E-value=3.6e-10  Score=99.91  Aligned_cols=337  Identities=14%  Similarity=0.120  Sum_probs=188.5

Q ss_pred             CChHHHHHHHHHHhhcC-CCCCC--HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHH
Q 045814           84 NNVLLSIRFFQWLHSHY-GFSPD--LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFC  159 (427)
Q Consensus        84 ~~~~~a~~~~~~~~~~~-~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~  159 (427)
                      .++.+|+++++-+..+- .+..+  ....+.+--.+.+.|+++.|+..|+. +...|+..+--.|+-++...|+-++..+
T Consensus       251 r~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmke  330 (840)
T KOG2003|consen  251 REFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKE  330 (840)
T ss_pred             hhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHH
Confidence            45677778777765541 12212  22344444455678899999999887 5667887654445555556788888889


Q ss_pred             HHHHHHhcCCCcCHhh--------HHHHHHHHHHc---------CC--hhHHHHHHHHHHhc--------c---------
Q 045814          160 AFSKLKEMGVFGSIKT--------WNSALLGCIKI---------DR--TDLVWKLYHDLIES--------G---------  203 (427)
Q Consensus       160 ~~~~m~~~g~~p~~~~--------~~~ll~~~~~~---------~~--~~~a~~~~~~~~~~--------~---------  203 (427)
                      .|.+|...-..||..-        -..|+.--.+.         +.  .+++.-.--.++..        |         
T Consensus       331 af~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk  410 (840)
T KOG2003|consen  331 AFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLK  410 (840)
T ss_pred             HHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHH
Confidence            9998876533332211        11122111111         11  11111110111100        0         


Q ss_pred             -------------hhHHHHHhcCChhHHHHHHHHHHHCCCC-------------------------------CCHHHHHH
Q 045814          204 -------------YLIQAFCNDGKVSEGYELLRQVLEDGLV-------------------------------PENTAFNK  239 (427)
Q Consensus       204 -------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------------------------------~~~~~~~~  239 (427)
                                   .-...|.+.|+++.|+++++-+....-+                               .+..-||.
T Consensus       411 ~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~  490 (840)
T KOG2003|consen  411 ASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNA  490 (840)
T ss_pred             HhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCH
Confidence                         0123456667777776666655433111                               01111111


Q ss_pred             HH-----HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----------------
Q 045814          240 LI-----SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----------------  298 (427)
Q Consensus       240 li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----------------  298 (427)
                      ..     +.....|++++|.+.+++....+-.-....||+=+ .+-..|++++|++.|-++...                
T Consensus       491 ~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfnigl-t~e~~~~ldeald~f~klh~il~nn~evl~qianiye  569 (840)
T KOG2003|consen  491 AALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGL-TAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYE  569 (840)
T ss_pred             HHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcc-cHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            11     22344677777777777665543222222232222 234455555555555443211                


Q ss_pred             ----------------C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814          299 ----------------G-YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       299 ----------------~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  361 (427)
                                      . ++-|+...+-|...|-+.|+-.+|++.+-+--+. .+-+..|..-|...|....-++++..+
T Consensus       570 ~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y  648 (840)
T KOG2003|consen  570 LLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINY  648 (840)
T ss_pred             HhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHH
Confidence                            1 2224555666666666666666666554332222 233555666666667777777788888


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHH-HhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          362 HKEMLDKGYGETTVTYNTLIAGL-CLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       362 ~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                      |++..-  +.|+..-|..+|..| .+.|++++|+++|++...+ ++-|.....-|++.+...|..
T Consensus       649 ~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~  710 (840)
T KOG2003|consen  649 FEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK  710 (840)
T ss_pred             HHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch
Confidence            877654  679999999998655 5789999999999999876 566888888888888777753

>PF13041 PPR_2: PPR repeat family

Probab=99.41  E-value=7.4e-13  Score=83.36  Aligned_cols=49  Identities=47%  Similarity=0.939  Sum_probs=22.5

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      ||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus         1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~   49 (50)
T PF13041_consen    1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC   49 (50)
T ss_pred             CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence            3444444444444444444444444444444444444444444444443

>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]

Probab=99.40  E-value=3.1e-09  Score=101.63  Aligned_cols=317  Identities=13%  Similarity=0.096  Sum_probs=237.5

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      ....-.....+.-.|++++|.+++.+. .. +.+...|-+|...|-+.|+.+++...+-..-..... |...|..+....
T Consensus       139 l~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~-d~e~W~~ladls  217 (895)
T KOG2076|consen  139 LRQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPK-DYELWKRLADLS  217 (895)
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCC-ChHHHHHHHHHH
Confidence            344444455555669999999999883 33 446779999999999999999999888655554434 678999999999


Q ss_pred             HHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH----HHHHHHccCChh
Q 045814          184 IKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK----LISRFCEKKNFG  251 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----li~~~~~~~~~~  251 (427)
                      .+.|+++.|.-.|.+.++.+.        -...|-+.|+...|.+-|.++.......|..-+..    .+..+...++-+
T Consensus       218 ~~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e  297 (895)
T KOG2076|consen  218 EQLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERE  297 (895)
T ss_pred             HhcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHH
Confidence            999999999999999998853        46678899999999999999998755334333333    455667778889


Q ss_pred             HHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC---------------------------CCCC
Q 045814          252 RVSELLHTMVARN-RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG---------------------------YVPD  303 (427)
Q Consensus       252 ~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~---------------------------~~p~  303 (427)
                      .|.+.++.....+ -..+...++.+...|.+...++.|......+....                           ..++
T Consensus       298 ~a~~~le~~~s~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~  377 (895)
T KOG2076|consen  298 RAAKALEGALSKEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYD  377 (895)
T ss_pred             HHHHHHHHHHhhccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCcc
Confidence            9999998877632 24455678899999999999999998888876511                           1122


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      ..+ --+.-++.+....+....+..........|  +...|.-+..+|...|++.+|.++|..+......-+...|-.+.
T Consensus       378 l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a  456 (895)
T KOG2076|consen  378 LRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLA  456 (895)
T ss_pred             chh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHH
Confidence            222 122334445555666666666666666443  45678889999999999999999999999875555678999999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCCCC
Q 045814          382 AGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~~~  426 (427)
                      .+|...|.+++|.+.|+.....  .|+ ...--.|-..+-+.|+.|
T Consensus       457 ~c~~~l~e~e~A~e~y~kvl~~--~p~~~D~Ri~Lasl~~~~g~~E  500 (895)
T KOG2076|consen  457 RCYMELGEYEEAIEFYEKVLIL--APDNLDARITLASLYQQLGNHE  500 (895)
T ss_pred             HHHHHHhhHHHHHHHHHHHHhc--CCCchhhhhhHHHHHHhcCCHH
Confidence            9999999999999999999875  333 334445555666666654

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.36  E-value=7.1e-10  Score=95.53  Aligned_cols=194  Identities=13%  Similarity=0.096  Sum_probs=149.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...+...|++++|.+.+++....... +...+..+...+...|++++|.+.+++..+... .+...+..+...+...|++
T Consensus        38 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~g~~  115 (234)
T TIGR02521        38 ALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDSFRRALTLNP-NNGDVLNNYGTFLCQQGKY  115 (234)
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcccH
Confidence            34445556666666666665554322 566788888899999999999999998887753 3556778888889999999


Q ss_pred             HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      ++|.+.+++.......+ ....+..+...+...|++++|...+++...... .+...+..+...+...|++++|...+++
T Consensus       116 ~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~  194 (234)
T TIGR02521       116 EQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLER  194 (234)
T ss_pred             HHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999987653222 344667778888999999999999999887642 2456788888899999999999999999


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..+. .+.+...+..+...+...|+.++|..+.+.+...
T Consensus       195 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  232 (234)
T TIGR02521       195 YQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL  232 (234)
T ss_pred             HHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence            8876 3446677778888888999999999998887653

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]

Probab=99.36  E-value=9.4e-09  Score=89.85  Aligned_cols=279  Identities=12%  Similarity=0.085  Sum_probs=212.5

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcC-C--CCCHHhHHHHHHHHHhcCChhHHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-F--SPNPNSLELYIQCLCESGLIEEAFC  159 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~--~~~~~~~~~li~~~~~~~~~~~A~~  159 (427)
                      .|++.+|.+......+. + .-....|..-.++..+.|+.+.+-.++.+.. .  .++...+-+..+.....|+.+.|..
T Consensus        97 eG~~~qAEkl~~rnae~-~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~  174 (400)
T COG3071          97 EGDFQQAEKLLRRNAEH-G-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE  174 (400)
T ss_pred             cCcHHHHHHHHHHhhhc-C-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence            58899999888876433 2 2234455556778888999999999998743 2  3445566677788899999999999


Q ss_pred             HHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch----------------hHHHHHhcCChhHHHHHHH
Q 045814          160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY----------------LIQAFCNDGKVSEGYELLR  223 (427)
Q Consensus       160 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----------------l~~~~~~~g~~~~a~~~~~  223 (427)
                      -.+.+.+.+.. ..........+|.+.|++..+..+...+.+.+.                ++.-....+..+.-...++
T Consensus       175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~  253 (400)
T COG3071         175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK  253 (400)
T ss_pred             HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence            99999988766 678889999999999999999999999998864                2222222233333333454


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814          224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD  303 (427)
Q Consensus       224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~  303 (427)
                      ..... ..-++..-.+++.-+.+.|+.++|.++.++..+++..|.    -...-.+.+-++...-.+..+.-.+.-.. +
T Consensus       254 ~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~~h~~-~  327 (400)
T COG3071         254 NQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLKQHPE-D  327 (400)
T ss_pred             hccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHHhCCC-C
Confidence            44332 333566777888889999999999999999999987766    22233456778888888877776554332 5


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE  372 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  372 (427)
                      +..+.++...|.+.+.+.+|...|+...+.  .|+..+|+.+.+++.+.|+..+|.++.++....-..|
T Consensus       328 p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~~  394 (400)
T COG3071         328 PLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREALLLTRQP  394 (400)
T ss_pred             hhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcCC
Confidence            578899999999999999999999977775  7899999999999999999999999999877443333

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.35  E-value=6.1e-08  Score=89.87  Aligned_cols=331  Identities=10%  Similarity=-0.025  Sum_probs=229.1

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHH
Q 045814           80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A  157 (427)
                      +...+..+-|..+|..+..-  ++.+...|......=-..|..+....+|++.  .++.....|-.....+-..|++..|
T Consensus       526 ~~k~~~~~carAVya~alqv--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~a  603 (913)
T KOG0495|consen  526 CEKRPAIECARAVYAHALQV--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAA  603 (913)
T ss_pred             HHhcchHHHHHHHHHHHHhh--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHH
Confidence            33445556666666666442  4556667776666656667888888888772  3344455677777778888999999


Q ss_pred             HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh-------HHHHHhcCChhHHHHHHHHHHHCCC
Q 045814          158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-------IQAFCNDGKVSEGYELLRQVLEDGL  230 (427)
Q Consensus       158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l-------~~~~~~~g~~~~a~~~~~~~~~~~~  230 (427)
                      ..++....+.... +...|-..+.......++++|..+|.+....+--       +....-.++.++|.+++++..+.- 
T Consensus       604 r~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~f-  681 (913)
T KOG0495|consen  604 RVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSF-  681 (913)
T ss_pred             HHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhC-
Confidence            9999888887555 7788888888888999999999999888776431       222334577888888888877642 


Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814          231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV  310 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  310 (427)
                      ..-...|-.+...+-+.++.+.|.+.|..-.+. ++-.+-.|-.+.+.--+.|.+-.|..++++..-.+.. +...|-..
T Consensus       682 p~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkNPk-~~~lwle~  759 (913)
T KOG0495|consen  682 PDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKNPK-NALLWLES  759 (913)
T ss_pred             CchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcCCC-cchhHHHH
Confidence            213446777777888888888888888765444 2334557777777778888899999999998877665 77888899


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT  390 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  390 (427)
                      |+.-.+.|..+.|..++.+..+. ++-+...|..-|....+.++-.+....+++     +..|++..-.+...+....++
T Consensus       760 Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~le~~~~rkTks~DALkk-----ce~dphVllaia~lfw~e~k~  833 (913)
T KOG0495|consen  760 IRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWLEPRPQRKTKSIDALKK-----CEHDPHVLLAIAKLFWSEKKI  833 (913)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHhccCcccchHHHHHHHh-----ccCCchhHHHHHHHHHHHHHH
Confidence            99999999999999888887765 333455566666655555554333333332     233666666666667777777


Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 045814          391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG  423 (427)
Q Consensus       391 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  423 (427)
                      ++|.+.|.+..+.+.. +-.+|.-+..-+.++|
T Consensus       834 ~kar~Wf~Ravk~d~d-~GD~wa~fykfel~hG  865 (913)
T KOG0495|consen  834 EKAREWFERAVKKDPD-NGDAWAWFYKFELRHG  865 (913)
T ss_pred             HHHHHHHHHHHccCCc-cchHHHHHHHHHHHhC
Confidence            7777777776665322 3456666666666666

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.35  E-value=8.4e-11  Score=111.67  Aligned_cols=264  Identities=13%  Similarity=0.102  Sum_probs=133.2

Q ss_pred             hcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc---CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHh
Q 045814           98 SHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST---GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIK  174 (427)
Q Consensus        98 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~---~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~  174 (427)
                      +..|+.|+..||..+|.-|+..|+.+.|- +|.-|   ....+...|+.++.+...+++.+.+.           .|.+.
T Consensus        17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-----------ep~aD   84 (1088)
T KOG4318|consen   17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-----------EPLAD   84 (1088)
T ss_pred             HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-----------CCchh
Confidence            34577777777777777777777777766 54432   22344556777777777777766665           56677


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 045814          175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS  254 (427)
Q Consensus       175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  254 (427)
                      ||..|..+|...||...    |+                   .+.+.+.               .++..+...|--....
T Consensus        85 tyt~Ll~ayr~hGDli~----fe-------------------~veqdLe---------------~i~~sfs~~Gvgs~e~  126 (1088)
T KOG4318|consen   85 TYTNLLKAYRIHGDLIL----FE-------------------VVEQDLE---------------SINQSFSDHGVGSPER  126 (1088)
T ss_pred             HHHHHHHHHHhccchHH----HH-------------------HHHHHHH---------------HHHhhhhhhccCcHHH
Confidence            77777777777776544    11                   1111111               1111112222222222


Q ss_pred             HHHHHHh-hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHH
Q 045814          255 ELLHTMV-ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIH  332 (427)
Q Consensus       255 ~~~~~m~-~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~  332 (427)
                      .++..+. ..+.-||..   ..+....-.|.++.+.+++..+...... .  ++-..++-+.... .+++...+.....+
T Consensus       127 ~fl~k~~c~p~~lpda~---n~illlv~eglwaqllkll~~~Pvsa~~-~--p~~vfLrqnv~~ntpvekLl~~cksl~e  200 (1088)
T KOG4318|consen  127 WFLMKIHCCPHSLPDAE---NAILLLVLEGLWAQLLKLLAKVPVSAWN-A--PFQVFLRQNVVDNTPVEKLLNMCKSLVE  200 (1088)
T ss_pred             HHHhhcccCcccchhHH---HHHHHHHHHHHHHHHHHHHhhCCccccc-c--hHHHHHHHhccCCchHHHHHHHHHHhhc
Confidence            2221111 011122221   1122222334444444444443222110 0  1111122222221 22333322222222


Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814          333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY  412 (427)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  412 (427)
                         .|+..+|..++++-...|+.+.|..++.+|.+.|++.+.+-|..|+-+   .++...+..+++-|.+.|+.|+..|+
T Consensus       201 ---~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~  274 (1088)
T KOG4318|consen  201 ---APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQ  274 (1088)
T ss_pred             ---CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchh
Confidence               466666666666666666666666666666666666666655555554   56666666666666666666666666


Q ss_pred             HHHHHHHHhcC
Q 045814          413 NTLIQGYCKEG  423 (427)
Q Consensus       413 ~~li~~~~~~g  423 (427)
                      ...+-.+.+.|
T Consensus       275 adyvip~l~N~  285 (1088)
T KOG4318|consen  275 ADYVIPQLSNG  285 (1088)
T ss_pred             HHHHHhhhcch
Confidence            66665555543

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.34  E-value=5.5e-09  Score=98.51  Aligned_cols=283  Identities=17%  Similarity=0.146  Sum_probs=199.5

Q ss_pred             HHHHHHcCChHHHHHHHHh-cCCCCCH-HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc----
Q 045814          113 FDSLVEARAFKVAMDFLDS-TGFSPNP-NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI----  186 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~----  186 (427)
                      ..++.+.|++++|++.+++ .+.-+|. .........+.+.|+.++|..+|..+.+.++. +..-|..+..+..-.    
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPd-n~~Yy~~L~~~~g~~~~~~   89 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPD-NYDYYRGLEEALGLQLQLS   89 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHhhhcccc
Confidence            3456788899999988876 3334554 45566678888889999999999998887543 444455555554222    


Q ss_pred             -CChhHHHHHHHHHHhcch-------hHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814          187 -DRTDLVWKLYHDLIESGY-------LIQAFCNDGKV-SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL  257 (427)
Q Consensus       187 -~~~~~a~~~~~~~~~~~~-------l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  257 (427)
                       .+.+....+|+++.+.-.       +.-.+.....+ ..+...+..+...|++   .+|+.|-..|....+..-..+++
T Consensus        90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP---slF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP---SLFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc---hHHHHHHHHHcChhHHHHHHHHH
Confidence             245667777777765521       11111111122 3455666777778865   36777777777666666666666


Q ss_pred             HHHhhC----C----------CCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCH
Q 045814          258 HTMVAR----N----------RAPDN--FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWL  320 (427)
Q Consensus       258 ~~m~~~----~----------~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~  320 (427)
                      ......    +          -.|+.  .++..+...|...|++++|+.+.++..+..  |+ +..|..-...+-+.|++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence            665432    1          12333  355666788889999999999999999884  44 56888889999999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhh--------HHHHHHHHHhcCCHHH
Q 045814          321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVT--------YNTLIAGLCLHGRTDE  392 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~--------~~~li~~~~~~g~~~~  392 (427)
                      .+|.+.++..+..+.. |...=+-....+.+.|++++|.+++......+..|-...        ......+|.+.|++..
T Consensus       245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999998654 777777788899999999999999999987765433221        2445678899999999


Q ss_pred             HHHHHHHHHH
Q 045814          393 AYHLFEEMAQ  402 (427)
Q Consensus       393 A~~~~~~m~~  402 (427)
                      |++-|....+
T Consensus       324 ALk~~~~v~k  333 (517)
T PF12569_consen  324 ALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHH
Confidence            9887766554

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.34  E-value=1e-08  Score=91.14  Aligned_cols=143  Identities=12%  Similarity=-0.009  Sum_probs=71.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814          277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE  356 (427)
Q Consensus       277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  356 (427)
                      +.|.-.++.++|...|++..+.+.. ....|+.+.+-|....+...|..-++.+++-. +-|-..|-.+.++|.-.+...
T Consensus       338 NYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQaYeim~Mh~  415 (559)
T KOG1155|consen  338 NYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQAYEIMKMHF  415 (559)
T ss_pred             hHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHHHHHhcchH
Confidence            3344444555555555555555433 34455555555555555555555555555442 224445555555555555555


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcC
Q 045814          357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEG  423 (427)
Q Consensus       357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g  423 (427)
                      -|.-+|++..+.. +.|...|.+|.++|.+.++.++|.+-|......|-. +...+..|.+.|-+.+
T Consensus       416 YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dt-e~~~l~~LakLye~l~  480 (559)
T KOG1155|consen  416 YALYYFQKALELK-PNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDT-EGSALVRLAKLYEELK  480 (559)
T ss_pred             HHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHHHHHHHHHHHhcccc-chHHHHHHHHHHHHHH
Confidence            5555555554432 224555555555555555555555555555444322 3344444444444433

>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW

Probab=99.32  E-value=2.8e-09  Score=91.77  Aligned_cols=200  Identities=11%  Similarity=0.001  Sum_probs=126.8

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      ...+..+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.                      
T Consensus        31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~la~~~~~~~~~~~A~~~----------------------   87 (234)
T TIGR02521        31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPD-DYLAYLALALYYQQLGELEKAEDS----------------------   87 (234)
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHH----------------------
Confidence            455666677777777777777777777654322 344444444444444444444444                      


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                          +++....... +...+..+...+...|++++|.+.+++.......+ ....+..+...+...|++++|...+.+..
T Consensus        88 ----~~~al~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~  162 (234)
T TIGR02521        88 ----FRRALTLNPN-NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRAL  162 (234)
T ss_pred             ----HHHHHhhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                3333333222 44556666667777777777777777776543222 23455666677777888888888888777


Q ss_pred             hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +.... +...+..+...+...|++++|...+++.... ...+...+..+...+...|+.++|..+.+.+..
T Consensus       163 ~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~  231 (234)
T TIGR02521       163 QIDPQ-RPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAAQRYGAQLQK  231 (234)
T ss_pred             HhCcC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            65432 4556777777777888888888888877766 233455666667777777888888877776654

Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.

>PRK12370 invasion protein regulator; Provisional

Probab=99.32  E-value=2.8e-09  Score=103.66  Aligned_cols=193  Identities=11%  Similarity=-0.018  Sum_probs=93.9

Q ss_pred             CHHhHHHHHHHHHh-----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc---------CChhHHHHHHHHHHhc
Q 045814          137 NPNSLELYIQCLCE-----SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI---------DRTDLVWKLYHDLIES  202 (427)
Q Consensus       137 ~~~~~~~li~~~~~-----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~  202 (427)
                      +...|...+++-..     .+.+++|.+.|++..+.... +...|..+..++...         ++.++|...+++.++.
T Consensus       255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~-~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPN-SIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            45555555555322     23467888888888876433 445555555444322         2245555555555544


Q ss_pred             c--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 045814          203 G--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE  274 (427)
Q Consensus       203 ~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  274 (427)
                      +        .+...+...|++++|...+++..+.++. +...+..+...+...|++++|...+++..+..+. +...+..
T Consensus       334 dP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~  411 (553)
T PRK12370        334 DHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPI-SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT  411 (553)
T ss_pred             CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence            2        1333444555555555555555554322 3344445555555555555555555555554322 1112222


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      ++..+...|++++|...++++.+....-+...+..+..++...|+.++|...+.++..
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~  469 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEIST  469 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh
Confidence            2223444555555555555554332111223344444455555555555555555433

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.32  E-value=4.3e-10  Score=95.36  Aligned_cols=220  Identities=11%  Similarity=0.026  Sum_probs=155.1

Q ss_pred             HHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhH-HHHHHHHHHcC
Q 045814          110 NVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTW-NSALLGCIKID  187 (427)
Q Consensus       110 ~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~-~~ll~~~~~~~  187 (427)
                      +.+...|.+.|.+.+|.+.|+. ....|-+.||-.|-+.|.+.+++..|+.+|.+-.+.  .|-.+|| .-+.+.+...+
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~eam~  304 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHEAME  304 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHHHHH
Confidence            4566777888888888888876 455677888888888888888888888888777764  3444444 45566777777


Q ss_pred             ChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814          188 RTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       188 ~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  259 (427)
                      +.++|.++|+...+..        .+...|.-.++++-|+..++++.+.|+. +...|+.+.-+|.-.++++-++.-|.+
T Consensus       305 ~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~R  383 (478)
T KOG1129|consen  305 QQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQR  383 (478)
T ss_pred             hHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHH
Confidence            7888888887777652        2556677777788888888888877776 667777777777777777777777777


Q ss_pred             HhhCCCCCCH--hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          260 MVARNRAPDN--FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       260 m~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ....--.|+.  .+|-.+-......|++..|.+-|+-....+.. ....+|.|.-.-.+.|++++|..+++.....
T Consensus       384 Alstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  384 ALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             HHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence            6655433332  45666666666777777777777776655433 4456777766667777777777777776554

>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]

Probab=99.30  E-value=5e-10  Score=106.55  Aligned_cols=69  Identities=10%  Similarity=0.052  Sum_probs=53.3

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhH
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE  156 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  156 (427)
                      .-+...++.+.|- +|..|+.+ ...-+...|+.++....+.++.+.+.        .|.+.+|..|..+|...|++..
T Consensus        33 arYc~~gdieaat-if~fm~~k-sLpv~e~vf~~lv~sh~~And~Enpk--------ep~aDtyt~Ll~ayr~hGDli~  101 (1088)
T KOG4318|consen   33 ARYCTKGDIEAAT-IFPFMEIK-SLPVREGVFRGLVASHKEANDAENPK--------EPLADTYTNLLKAYRIHGDLIL  101 (1088)
T ss_pred             HHHcccCCCcccc-chhhhhcc-cccccchhHHHHHhcccccccccCCC--------CCchhHHHHHHHHHHhccchHH
Confidence            3344567777776 88888544 46667888999998888888766554        7889999999999999999765

>PRK12370 invasion protein regulator; Provisional

Probab=99.30  E-value=5.9e-09  Score=101.40  Aligned_cols=257  Identities=11%  Similarity=0.029  Sum_probs=181.3

Q ss_pred             CCHhhHHHHHHHHHH-----cCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHh---------cCChhHHHHHHHHHHhc
Q 045814          104 PDLVSCNVLFDSLVE-----ARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCE---------SGLIEEAFCAFSKLKEM  167 (427)
Q Consensus       104 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~---------~~~~~~A~~~~~~m~~~  167 (427)
                      .+...|...+.+...     .+.+++|..+|++ ....|+ ...|..+..++..         .+++++|...+++..+.
T Consensus       254 ~~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~l  333 (553)
T PRK12370        254 NSIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATEL  333 (553)
T ss_pred             CChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhc
Confidence            345566666665432     2346789999987 555665 4566666555442         34588999999999987


Q ss_pred             CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045814          168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK  239 (427)
Q Consensus       168 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  239 (427)
                      +.. +...+..+...+...|++++|...|++.++.+        .+...+...|++++|...+++..+..+. +...+..
T Consensus       334 dP~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~  411 (553)
T PRK12370        334 DHN-NPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGIT  411 (553)
T ss_pred             CCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHH
Confidence            655 78888888899999999999999999998874        2677888999999999999999987654 3333344


Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814          240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW  319 (427)
Q Consensus       240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  319 (427)
                      ++..+...|++++|...+++......+-+...+..+...+...|+.++|...+.++...... +....+.+...|...| 
T Consensus       412 ~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g-  489 (553)
T PRK12370        412 KLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEIT-GLIAVNLLYAEYCQNS-  489 (553)
T ss_pred             HHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccch-hHHHHHHHHHHHhccH-
Confidence            45556778999999999999876642224456777888889999999999999998665221 3444555666777777 


Q ss_pred             HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          320 LGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       320 ~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                       ++|...++.+.+.. -.+....+  +-..|.-.|+-+.+..+ +++.+.
T Consensus       490 -~~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~  535 (553)
T PRK12370        490 -ERALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNE  535 (553)
T ss_pred             -HHHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhcc
Confidence             47777777766541 12222222  33345556776666665 777765

>KOG1129 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.29  E-value=6e-10  Score=94.53  Aligned_cols=229  Identities=11%  Similarity=0.044  Sum_probs=185.1

Q ss_pred             HHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHH
Q 045814          142 ELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYEL  221 (427)
Q Consensus       142 ~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~  221 (427)
                      +.+.++|.+.|.+.+|.+.|+.-.+.  .|-+.||-.|-++|.+..+...|+.++.+-                      
T Consensus       227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~g----------------------  282 (478)
T KOG1129|consen  227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEG----------------------  282 (478)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhh----------------------
Confidence            67889999999999999999988875  455667777777777766666666555433                      


Q ss_pred             HHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          222 LRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       222 ~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                          .+.  .| |+....-..+.+-..++.++|.++++...+.. ..++....++...|.-.++++-|++.|+++.+.|+
T Consensus       283 ----ld~--fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~  355 (478)
T KOG1129|consen  283 ----LDS--FPFDVTYLLGQARIHEAMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGA  355 (478)
T ss_pred             ----hhc--CCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcC
Confidence                332  23 33344456677788899999999999988774 34677888888899999999999999999999998


Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 045814          301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE--YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN  378 (427)
Q Consensus       301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  378 (427)
                      . +...|+.+.-+|.-.+++|-++--|++....--.|+.  ..|-.+-......||+..|.+.|+-...++-. +...+|
T Consensus       356 ~-speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealn  433 (478)
T KOG1129|consen  356 Q-SPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALN  433 (478)
T ss_pred             C-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHH
Confidence            7 8889999999999999999999999998876544543  45777777788899999999999998877433 678899


Q ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          379 TLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       379 ~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .|.-.-.+.|++++|..+++.....
T Consensus       434 NLavL~~r~G~i~~Arsll~~A~s~  458 (478)
T KOG1129|consen  434 NLAVLAARSGDILGARSLLNAAKSV  458 (478)
T ss_pred             hHHHHHhhcCchHHHHHHHHHhhhh
Confidence            9998889999999999999998875

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.27  E-value=1.4e-07  Score=84.37  Aligned_cols=153  Identities=11%  Similarity=0.197  Sum_probs=96.8

Q ss_pred             cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH
Q 045814          247 KKNFGRVSELLHTMVARNRAPDNFTYEEVINGL----CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD  322 (427)
Q Consensus       247 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  322 (427)
                      ..|.+.+.++++..++. ++...+||.-+--.|    .++.++..|.+++....  |.-|...+|...|..-.+.++++.
T Consensus       379 ~ed~ertr~vyq~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDR  455 (677)
T KOG1915|consen  379 AEDVERTRQVYQACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDR  455 (677)
T ss_pred             hhhHHHHHHHHHHHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHH
Confidence            44455555555554442 222334444333333    24556666666666554  335666777777777777777888


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +..+|++.++.+.. |..+|......-...|+.+.|..+|.-.+... .......|.+.|+.-...|.+++|..+++++.
T Consensus       456 cRkLYEkfle~~Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL  534 (677)
T KOG1915|consen  456 CRKLYEKFLEFSPE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLL  534 (677)
T ss_pred             HHHHHHHHHhcChH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHH
Confidence            88888887776532 55666666666667788888888888777552 22234567777777777888888888888887


Q ss_pred             HC
Q 045814          402 QK  403 (427)
Q Consensus       402 ~~  403 (427)
                      +.
T Consensus       535 ~r  536 (677)
T KOG1915|consen  535 DR  536 (677)
T ss_pred             Hh
Confidence            75

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.25  E-value=6.5e-09  Score=96.95  Aligned_cols=260  Identities=18%  Similarity=0.182  Sum_probs=171.4

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhc-----CC-CcCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHh
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEM-----GV-FGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN  211 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g~-~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~  211 (427)
                      .+...|...|...|+++.|+.+++...+.     |. .|.+. ..+.+...|...+++++|..+|+++            
T Consensus       200 ~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~A------------  267 (508)
T KOG1840|consen  200 RTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEA------------  267 (508)
T ss_pred             HHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHH------------
Confidence            45666888999999999999999877654     21 11111 1222334444455555554443322            


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-----CC-CCCH-hhHHHHHHHHHhcCC
Q 045814          212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-----NR-APDN-FTYEEVINGLCKSRK  284 (427)
Q Consensus       212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-----~~-~~~~-~~~~~ll~~~~~~~~  284 (427)
                             +.+++........--..+++.|...|.+.|++++|...+++..+-     +. .|.+ ..++.+...++..++
T Consensus       268 -------L~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~  340 (508)
T KOG1840|consen  268 -------LTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNE  340 (508)
T ss_pred             -------HHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcc
Confidence                   222332222222223457777888899999998888777765431     21 2233 356777788889999


Q ss_pred             hHHHHHHHHHHHhC-----CCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C--CCCCHHHHHHHHHHHh
Q 045814          285 RLEAYRVFNDLKER-----GYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----G--LLPNEYTYNSMIHGYC  350 (427)
Q Consensus       285 ~~~a~~~~~~m~~~-----~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~--~~p~~~~~~~li~~~~  350 (427)
                      +++|..++....+.     |..  --..+++.|...|...|++++|++++++++..     |  ..-....++.+...|.
T Consensus       341 ~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~  420 (508)
T KOG1840|consen  341 YEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYE  420 (508)
T ss_pred             hhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHH
Confidence            99999999876432     211  12358999999999999999999999998754     1  1122456788888999


Q ss_pred             hcCCHHHHHHHHHHHHHC----CCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC------CCCCCHhHHHHHHH
Q 045814          351 RIDNLEEAKRLHKEMLDK----GYG-E-TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK------GIFRDVITYNTLIQ  417 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~----~~~-p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------g~~p~~~~~~~li~  417 (427)
                      +.+.+.+|.++|.+....    |.. | ...+|..|...|...|++++|.++.+.....      ...|+.........
T Consensus       421 ~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  499 (508)
T KOG1840|consen  421 ELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLNAREQRLGTASPTVEDEKLRLA  499 (508)
T ss_pred             HhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHcCCCCCcchhHHHHhhh
Confidence            999999999998875432    221 2 2578999999999999999999998877532      33455554444433

>KOG2003 consensus TPR repeat-containing protein [General function prediction only]

Probab=99.24  E-value=3.8e-09  Score=93.53  Aligned_cols=335  Identities=11%  Similarity=0.109  Sum_probs=190.8

Q ss_pred             hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC------HHhHHHHHHHHHhcCChhHHH
Q 045814           86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN------PNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~------~~~~~~li~~~~~~~~~~~A~  158 (427)
                      ...|+..++.+.+..-++-.-..--.+-.++.+...+.+|+++++- ....|+      ....+.+.-.+.+.|.++.|+
T Consensus       217 ~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dai  296 (840)
T KOG2003|consen  217 TAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAI  296 (840)
T ss_pred             HHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhH
Confidence            4556666665544332222222223344566788889999999875 333343      345667777788999999999


Q ss_pred             HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------------hhHHH---------HHhc
Q 045814          159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------------YLIQA---------FCND  212 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------~l~~~---------~~~~  212 (427)
                      ..|+...+.  .|+..+--.|+-++--.|+.++..+.|..|+..-                 .|+.-         .-+.
T Consensus       297 nsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~  374 (840)
T KOG2003|consen  297 NSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKE  374 (840)
T ss_pred             hhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHh
Confidence            999988775  5777666666666777899999999999988651                 12111         1111


Q ss_pred             CC--hhHHHHHHHHHHHCCCCCCHH---------------------HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH
Q 045814          213 GK--VSEGYELLRQVLEDGLVPENT---------------------AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN  269 (427)
Q Consensus       213 g~--~~~a~~~~~~~~~~~~~~~~~---------------------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  269 (427)
                      .+  -++++-.--+++..-+.|+-.                     .--.-...+.+.|+++.|.++++.+.+.+-+.-.
T Consensus       375 ~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~s  454 (840)
T KOG2003|consen  375 NKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTAS  454 (840)
T ss_pred             hhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhH
Confidence            11  111111111111111112110                     0011235688999999999999887765332211


Q ss_pred             hhHHHHH------------------------------------HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814          270 FTYEEVI------------------------------------NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG  313 (427)
Q Consensus       270 ~~~~~ll------------------------------------~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  313 (427)
                      ..-+.|-                                    +.....|++++|.+.|.+.....-.-....||+ .-.
T Consensus       455 aaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfni-glt  533 (840)
T KOG2003|consen  455 AAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNI-GLT  533 (840)
T ss_pred             HHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHh-ccc
Confidence            1111110                                    011235799999999999987633322333442 334


Q ss_pred             HHccCCHHHHHHHHHHHHHc--------------------------------C-CCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814          314 LCKMGWLGDARKMWFEMIHK--------------------------------G-LLPNEYTYNSMIHGYCRIDNLEEAKR  360 (427)
Q Consensus       314 ~~~~g~~~~a~~~~~~m~~~--------------------------------~-~~p~~~~~~~li~~~~~~g~~~~a~~  360 (427)
                      +...|++++|++.|-++...                                . ++.|+....-|...|-+.|+-..|.+
T Consensus       534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~slip~dp~ilskl~dlydqegdksqafq  613 (840)
T KOG2003|consen  534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSLIPNDPAILSKLADLYDQEGDKSQAFQ  613 (840)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcccCCCCHHHHHHHHHHhhcccchhhhhh
Confidence            55678888887777665432                                1 12233344444444555555555544


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHH-hcCCCC
Q 045814          361 LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYC-KEGKIV  426 (427)
Q Consensus       361 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~-~~g~~~  426 (427)
                      .+-+--.. ++-+..+..-|..-|....-+++|..+|++..-  +.|+..-|..+|..|. +.|.+.
T Consensus       614 ~~ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyq  677 (840)
T KOG2003|consen  614 CHYDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQ  677 (840)
T ss_pred             hhhhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHH
Confidence            43332221 334555555555566666666677777766543  6899999999887665 456543

>KOG0495 consensus HAT repeat protein [RNA processing and modification]

Probab=99.23  E-value=6.1e-07  Score=83.47  Aligned_cols=323  Identities=12%  Similarity=0.055  Sum_probs=158.0

Q ss_pred             hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-------cCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814           86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-------TGFSPNPNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~~~~~~~~li~~~~~~~~~~~A~  158 (427)
                      ++-|.++++.+++.  ++-+...|.+-...=-..|+.+.+.+++++       -|+.-+...|-.=...|-+.|.+-.+.
T Consensus       422 YenAkkvLNkaRe~--iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQ  499 (913)
T KOG0495|consen  422 YENAKKVLNKAREI--IPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQ  499 (913)
T ss_pred             HHHHHHHHHHHHhh--CCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHH
Confidence            34444555555432  455566665555555556666666665543       244445555544455555555555555


Q ss_pred             HHHHHHHhcCCCcC--HhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------------------------------
Q 045814          159 CAFSKLKEMGVFGS--IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------------------------------  204 (427)
Q Consensus       159 ~~~~~m~~~g~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------------------------------  204 (427)
                      .+.......|+.-.  ..||..-...|.+.+.++-|..+|...++.-.                                
T Consensus       500 AIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~  579 (913)
T KOG0495|consen  500 AIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ  579 (913)
T ss_pred             HHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            55555555544421  23455555555555555555555555544311                                


Q ss_pred             ----------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 045814          205 ----------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE  274 (427)
Q Consensus       205 ----------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  274 (427)
                                ....+-..|++..|..++....+.... +...|-..+..-.....++.|..+|.+....  .|+..+|.-
T Consensus       580 ~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mK  656 (913)
T KOG0495|consen  580 CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMK  656 (913)
T ss_pred             CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHH
Confidence                      122233345555555555555444332 4444555555555555555555555544432  334444444


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  353 (427)
                      -+....-.+..++|.+++++..+.  -|+ ...|..+.+.+-+.++++.|...|..-.+. ++-....|-.+.+.--+.|
T Consensus       657 s~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ipLWllLakleEk~~  733 (913)
T KOG0495|consen  657 SANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIPLWLLLAKLEEKDG  733 (913)
T ss_pred             HhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCchHHHHHHHHHHHhc
Confidence            444444445555555555554443  122 224444444555555555555544433322 1112233444444444555


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG  418 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  418 (427)
                      .+-+|..++++..-.+.+ +...|-..|++-.+.|+.+.|..++.+..+. ++-+...|..-|..
T Consensus       734 ~~~rAR~ildrarlkNPk-~~~lwle~Ir~ElR~gn~~~a~~lmakALQe-cp~sg~LWaEaI~l  796 (913)
T KOG0495|consen  734 QLVRARSILDRARLKNPK-NALLWLESIRMELRAGNKEQAELLMAKALQE-CPSSGLLWAEAIWL  796 (913)
T ss_pred             chhhHHHHHHHHHhcCCC-cchhHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCccchhHHHHHHh
Confidence            666666666665544322 5556666666666666666666666555543 22234444444433

>KOG1840 consensus Kinesin light chain [Cytoskeleton]

Probab=99.23  E-value=4.3e-09  Score=98.14  Aligned_cols=241  Identities=16%  Similarity=0.142  Sum_probs=175.7

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHhc--------CC-CCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhc-----C--
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDST--------GF-SPNPN-SLELYIQCLCESGLIEEAFCAFSKLKEM-----G--  168 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~-~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g--  168 (427)
                      ..+...+...|...|+++.|..+++..        |. .|... ..+.+...|...+++.+|..+|+++...     |  
T Consensus       199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~  278 (508)
T KOG1840|consen  199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED  278 (508)
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence            446777899999999999999998752        21 23333 3455778899999999999999998743     2  


Q ss_pred             CCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc
Q 045814          169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-TAFNKLISRFCEK  247 (427)
Q Consensus       169 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~  247 (427)
                      .+--+.+++.|..+|.+.|++++|...++                   .|+++++..... ..|.+ ..++.+...|+..
T Consensus       279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e-------------------~Al~I~~~~~~~-~~~~v~~~l~~~~~~~~~~  338 (508)
T KOG1840|consen  279 HPAVAATLNNLAVLYYKQGKFAEAEEYCE-------------------RALEIYEKLLGA-SHPEVAAQLSELAAILQSM  338 (508)
T ss_pred             CHHHHHHHHHHHHHHhccCChHHHHHHHH-------------------HHHHHHHHhhcc-ChHHHHHHHHHHHHHHHHh
Confidence            11134567777788999999999988865                   445555552211 11222 2466677788889


Q ss_pred             CChhHHHHHHHHHhhC---CCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC--CC-ChhhHHHHHHH
Q 045814          248 KNFGRVSELLHTMVAR---NRAPD----NFTYEEVINGLCKSRKRLEAYRVFNDLKER----GY--VP-DTVMYTTVIHG  313 (427)
Q Consensus       248 ~~~~~a~~~~~~m~~~---~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~p-~~~~~~~li~~  313 (427)
                      +++++|..++....+.   -+.++    ..+++.|...|.+.|++++|+++|++....    +.  .+ ....++.+...
T Consensus       339 ~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~  418 (508)
T KOG1840|consen  339 NEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEA  418 (508)
T ss_pred             cchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHH
Confidence            9999999998865542   12222    358999999999999999999999988543    11  12 24577889999


Q ss_pred             HHccCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          314 LCKMGWLGDARKMWFEMIHK----GL-LPN-EYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       314 ~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      |.+.+++++|.++|.+...-    |. .|+ ..+|..|...|...|+++.|.++.+...
T Consensus       419 ~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~  477 (508)
T KOG1840|consen  419 YEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL  477 (508)
T ss_pred             HHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence            99999999999888875432    32 223 4688999999999999999999998876

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.22  E-value=1e-07  Score=85.47  Aligned_cols=189  Identities=14%  Similarity=0.155  Sum_probs=100.4

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814          209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA  288 (427)
Q Consensus       209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  288 (427)
                      |....+.++..+.|.+..+.+.. ++.+|..-...+.-.+++++|..=|++.+..... +...|-.+.-+..+.++++++
T Consensus       370 y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~~k~~~~  447 (606)
T KOG0547|consen  370 YADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQHKIAES  447 (606)
T ss_pred             HhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHHHHHHHH
Confidence            33344444444444444433322 3333433334444444444555545444443211 334444444555566666777


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-----CCHHH--HHHHHHHHhhcCCHHHHHHH
Q 045814          289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-----PNEYT--YNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~--~~~li~~~~~~g~~~~a~~~  361 (427)
                      +..|++..++-.. .+..|+.....+...++++.|.+.|+..++....     .+..+  --.++.. --.+++..|.++
T Consensus       448 m~~Fee~kkkFP~-~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~-qwk~d~~~a~~L  525 (606)
T KOG0547|consen  448 MKTFEEAKKKFPN-CPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVL-QWKEDINQAENL  525 (606)
T ss_pred             HHHHHHHHHhCCC-CchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhh-chhhhHHHHHHH
Confidence            7777766655222 4456666677777777777777777766654211     11111  1111111 122667777777


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       362 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      +.+..+.+.+ ....|..|...-...|+.++|+++|++-..
T Consensus       526 l~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~eAielFEksa~  565 (606)
T KOG0547|consen  526 LRKAIELDPK-CEQAYETLAQFELQRGKIDEAIELFEKSAQ  565 (606)
T ss_pred             HHHHHccCch-HHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence            7777665322 345677777888888888888888877543

>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.19  E-value=6e-08  Score=86.96  Aligned_cols=335  Identities=13%  Similarity=0.070  Sum_probs=225.0

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCC-HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPD-LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFC  159 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~  159 (427)
                      .+.++.|++++.|+..   +.|| +.-|.....+|...|+|+++.+.-.+ ..+.|+ +..+.-=..++-..|++++|+.
T Consensus       128 ~kkY~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~  204 (606)
T KOG0547|consen  128 NKKYDEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALF  204 (606)
T ss_pred             cccHHHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHH
Confidence            4678999999999975   4788 77888888899999999998887655 566676 4466666778888999988865


Q ss_pred             HHHHH-------------------------------Hhc--CCCcCHhhHHHHHHHHHHc--------C---C--hhHHH
Q 045814          160 AFSKL-------------------------------KEM--GVFGSIKTWNSALLGCIKI--------D---R--TDLVW  193 (427)
Q Consensus       160 ~~~~m-------------------------------~~~--g~~p~~~~~~~ll~~~~~~--------~---~--~~~a~  193 (427)
                      =....                               .+.  -+.|+.....+.+..+...        +   +  ..++.
T Consensus       205 D~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l  284 (606)
T KOG0547|consen  205 DVTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEAL  284 (606)
T ss_pred             hhhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHH
Confidence            33311                               100  1223333333333222110        0   0  01111


Q ss_pred             HHHHHH------------Hhc----------c-------hhHHH-------HHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 045814          194 KLYHDL------------IES----------G-------YLIQA-------FCNDGKVSEGYELLRQVLEDGLVPENTAF  237 (427)
Q Consensus       194 ~~~~~~------------~~~----------~-------~l~~~-------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  237 (427)
                      +-+..-            .+.          +       .+..+       +.-.|+...|.+-|+..+.....++ ..|
T Consensus       285 ~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~-~ly  363 (606)
T KOG0547|consen  285 EALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFN-SLY  363 (606)
T ss_pred             HHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccc-hHH
Confidence            111111            000          0       02222       2335778888888888887665533 337


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM  317 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  317 (427)
                      --+..+|...++.++..+.|....+.+.. +..+|..-...+.-.+++++|..=|++....... ++..|-.+..+..+.
T Consensus       364 I~~a~~y~d~~~~~~~~~~F~~A~~ldp~-n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~~iQl~~a~Yr~  441 (606)
T KOG0547|consen  364 IKRAAAYADENQSEKMWKDFNKAEDLDPE-NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYAYIQLCCALYRQ  441 (606)
T ss_pred             HHHHHHHhhhhccHHHHHHHHHHHhcCCC-CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHHHHHHHHHHHHH
Confidence            77778899999999999999988877643 5667877777888888999999999998887544 566777777777788


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-----C--CCChhhHHHHHHHHHhcCCH
Q 045814          318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-----Y--GETTVTYNTLIAGLCLHGRT  390 (427)
Q Consensus       318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~--~p~~~~~~~li~~~~~~g~~  390 (427)
                      +++++++..|++.++. .+--+..|+.....+...+++++|.+.|+..++..     +  .+.+.+-..++..-.+ +++
T Consensus       442 ~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~qwk-~d~  519 (606)
T KOG0547|consen  442 HKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQWK-EDI  519 (606)
T ss_pred             HHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhchh-hhH
Confidence            9999999999999886 34346789999999999999999999999887642     1  1112222333333333 889


Q ss_pred             HHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          391 DEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       391 ~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      ..|..++++..+...+ ....|..|-+.-...|+.+
T Consensus       520 ~~a~~Ll~KA~e~Dpk-ce~A~~tlaq~~lQ~~~i~  554 (606)
T KOG0547|consen  520 NQAENLLRKAIELDPK-CEQAYETLAQFELQRGKID  554 (606)
T ss_pred             HHHHHHHHHHHccCch-HHHHHHHHHHHHHHHhhHH
Confidence            9999999998875433 3456777766666666554

>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]

Probab=99.18  E-value=5.2e-07  Score=80.82  Aligned_cols=311  Identities=14%  Similarity=0.157  Sum_probs=207.1

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAF  161 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  161 (427)
                      .+|...|.++|....   ..+|+...|++.|+.=.+-+.++.|..++++ .-+.|++.+|--..+.=.++|.+..|..+|
T Consensus       154 LgNi~gaRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~Vy  230 (677)
T KOG1915|consen  154 LGNIAGARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVY  230 (677)
T ss_pred             hcccHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHH
Confidence            477777888887543   3678889999988888888888888888887 344577777766666666667666666666


Q ss_pred             HHHHhc-CC-Cc--------------------------------------------------------------------
Q 045814          162 SKLKEM-GV-FG--------------------------------------------------------------------  171 (427)
Q Consensus       162 ~~m~~~-g~-~p--------------------------------------------------------------------  171 (427)
                      +...+. |- .-                                                                    
T Consensus       231 erAie~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~q  310 (677)
T KOG1915|consen  231 ERAIEFLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQ  310 (677)
T ss_pred             HHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhH
Confidence            654432 10 00                                                                    


Q ss_pred             ----------CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc------------------hhHHHHHhcCChhHHHHHHH
Q 045814          172 ----------SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG------------------YLIQAFCNDGKVSEGYELLR  223 (427)
Q Consensus       172 ----------~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------------------~l~~~~~~~g~~~~a~~~~~  223 (427)
                                |-.+|--.++.-...|+.+...++|+..+..-                  ..+-.-....+.+.+.++++
T Consensus       311 YE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq  390 (677)
T KOG1915|consen  311 YEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQ  390 (677)
T ss_pred             HHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence                      11122222222223333333333333333220                  01112224566777777777


Q ss_pred             HHHHCCCCCCHHHHHHHHHHH----HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814          224 QVLEDGLVPENTAFNKLISRF----CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG  299 (427)
Q Consensus       224 ~~~~~~~~~~~~~~~~li~~~----~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  299 (427)
                      ..++. ++....||..+=-.|    .+..++..|.+++...+.  .-|-..+|...|..-.+.+.++.+..+|++..+.+
T Consensus       391 ~~l~l-IPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~  467 (677)
T KOG1915|consen  391 ACLDL-IPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS  467 (677)
T ss_pred             HHHhh-cCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence            76662 233445555443333    467889999999987764  46777889999999999999999999999999987


Q ss_pred             CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 045814          300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYN  378 (427)
Q Consensus       300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~  378 (427)
                      +. +..+|.-....-...|+.+.|..+|.-..... .......|-..|..-...|.+++|..+++.+++.  .+...+|-
T Consensus       468 Pe-~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r--t~h~kvWi  544 (677)
T KOG1915|consen  468 PE-NCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR--TQHVKVWI  544 (677)
T ss_pred             hH-hhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh--cccchHHH
Confidence            76 88899888888889999999999999988763 2223446667777777889999999999999876  23444565


Q ss_pred             HHHHHHH-----hcC-----------CHHHHHHHHHHHHH
Q 045814          379 TLIAGLC-----LHG-----------RTDEAYHLFEEMAQ  402 (427)
Q Consensus       379 ~li~~~~-----~~g-----------~~~~A~~~~~~m~~  402 (427)
                      +...--.     ..|           ....|..+|++...
T Consensus       545 sFA~fe~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn~  584 (677)
T KOG1915|consen  545 SFAKFEASASEGQEDEDLAELEITDENIKRARKIFERANT  584 (677)
T ss_pred             hHHHHhccccccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence            5544322     223           45678888877644

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.16  E-value=7.8e-08  Score=87.76  Aligned_cols=277  Identities=15%  Similarity=0.095  Sum_probs=215.7

Q ss_pred             CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 045814          101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS  178 (427)
Q Consensus       101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  178 (427)
                      +...|+.....-.+-+-..+++.+..++.+..  ..++....+..-|.++...|+..+-..+=.++.+.-+. .+.+|-+
T Consensus       239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~-~a~sW~a  317 (611)
T KOG1173|consen  239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPS-KALSWFA  317 (611)
T ss_pred             hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCC-CCcchhh
Confidence            45667777777888888899999999988872  33556777777788999999988888888888876444 7889999


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccC
Q 045814          179 ALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLED--GLVPENTAFNKLISRFCEKK  248 (427)
Q Consensus       179 ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~~li~~~~~~~  248 (427)
                      +.--|.-.|..++|.+.|.+....+        .+...|+-.|..++|+..+...-+.  |.. -+  +--+.--|.+.+
T Consensus       318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~h-lP--~LYlgmey~~t~  394 (611)
T KOG1173|consen  318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCH-LP--SLYLGMEYMRTN  394 (611)
T ss_pred             HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCc-ch--HHHHHHHHHHhc
Confidence            9999999999999999998877653        2677788888899999888776653  322 11  222344678889


Q ss_pred             ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CC--CCChhhHHHHHHHHHccCCHHH
Q 045814          249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GY--VPDTVMYTTVIHGLCKMGWLGD  322 (427)
Q Consensus       249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~--~p~~~~~~~li~~~~~~g~~~~  322 (427)
                      +.+.|.+.|.+..... +-|+...+-+.-.....+.+.+|..+|...+..    +.  ..-..+++.|..+|.+.+.+++
T Consensus       395 n~kLAe~Ff~~A~ai~-P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~e  473 (611)
T KOG1173|consen  395 NLKLAEKFFKQALAIA-PSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEE  473 (611)
T ss_pred             cHHHHHHHHHHHHhcC-CCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHH
Confidence            9999999999887663 447778888888888889999999999887622    10  1134568889999999999999


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      |+..+++..... +-|..++.++.-.|...|+++.|.+.|.+...  +.||..+...++..+.
T Consensus       474 AI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~ai  533 (611)
T KOG1173|consen  474 AIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLAI  533 (611)
T ss_pred             HHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHHH
Confidence            999999998874 44888999999999999999999999998875  5678777777766544

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.11  E-value=1.1e-07  Score=77.26  Aligned_cols=205  Identities=11%  Similarity=0.017  Sum_probs=169.3

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      +.-+|...|+...|..-+++.++.... +..+|..+...|.+.|+.+.|.+.|++..+.... +..+.|.....+|..|+
T Consensus        41 Lal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC~qg~  118 (250)
T COG3063          41 LALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLCAQGR  118 (250)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHHhCCC
Confidence            566788999999999999999887654 6778999999999999999999999999887533 56788888889999999


Q ss_pred             hHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK  363 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  363 (427)
                      +++|...|++....-.-+ -..+|..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++..|..+++
T Consensus       119 ~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar~~~~  197 (250)
T COG3063         119 PEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPARLYLE  197 (250)
T ss_pred             hHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHHHHHH
Confidence            999999999998762222 2347888888888999999999999999987533 34567778888889999999999999


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814          364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL  415 (427)
Q Consensus       364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  415 (427)
                      .....+. ++..+.-..|+.-...|+.+.+-++=.++...  .|...-|..+
T Consensus       198 ~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r~--fP~s~e~q~f  246 (250)
T COG3063         198 RYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQRL--FPYSEEYQTF  246 (250)
T ss_pred             HHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHhH
Confidence            9988765 78888888999999999999998888887764  5666555443

>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=99.06  E-value=1.2e-07  Score=77.15  Aligned_cols=186  Identities=11%  Similarity=0.003  Sum_probs=158.7

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC  315 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  315 (427)
                      +...|.-.|...|+...|..-+++.++.+.. +..+|..+...|-+.|..+.|.+-|++....... +..+.|....-+|
T Consensus        37 arlqLal~YL~~gd~~~A~~nlekAL~~DPs-~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~-~GdVLNNYG~FLC  114 (250)
T COG3063          37 ARLQLALGYLQQGDYAQAKKNLEKALEHDPS-YYLAHLVRAHYYQKLGENDLADESYRKALSLAPN-NGDVLNNYGAFLC  114 (250)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCC-ccchhhhhhHHHH
Confidence            5666778899999999999999999998533 5679999999999999999999999999887554 6678888888999


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 045814          316 KMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       316 ~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~  394 (427)
                      ..|++++|...|++....-.-+. ..||..+.-+..+.|+.+.|...|++..+.... ...+.-.+.....+.|++..|.
T Consensus       115 ~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~-~~~~~l~~a~~~~~~~~y~~Ar  193 (250)
T COG3063         115 AQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQ-FPPALLELARLHYKAGDYAPAR  193 (250)
T ss_pred             hCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcC-CChHHHHHHHHHHhcccchHHH
Confidence            99999999999999988633222 357888888889999999999999999987433 4567778888999999999999


Q ss_pred             HHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          395 HLFEEMAQKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       395 ~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                      .+++.....|. ++..+.-..|+.-.+.|+.
T Consensus       194 ~~~~~~~~~~~-~~A~sL~L~iriak~~gd~  223 (250)
T COG3063         194 LYLERYQQRGG-AQAESLLLGIRIAKRLGDR  223 (250)
T ss_pred             HHHHHHHhccc-ccHHHHHHHHHHHHHhccH
Confidence            99999998876 8888888888887777764

>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala

Probab=99.05  E-value=6.2e-07  Score=84.87  Aligned_cols=284  Identities=12%  Similarity=0.092  Sum_probs=195.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHH-h----
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLC-E----  150 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~-~----  150 (427)
                      ..++...++++.|++.++.-...  +.............+.+.|+.++|...+.. ....|+...|-..+..+. -    
T Consensus        11 ~~il~e~g~~~~AL~~L~~~~~~--I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~~~~   88 (517)
T PF12569_consen   11 NSILEEAGDYEEALEHLEKNEKQ--ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQLQL   88 (517)
T ss_pred             HHHHHHCCCHHHHHHHHHhhhhh--CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhhccc
Confidence            45777889999999999776433  334456777778899999999999999998 566787777655554443 2    


Q ss_pred             -cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh-hHHHHHHHHHHhcch------hHHHHHhcCChhHHHHHH
Q 045814          151 -SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT-DLVWKLYHDLIESGY------LIQAFCNDGKVSEGYELL  222 (427)
Q Consensus       151 -~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~  222 (427)
                       ....+...++|+++...-  |.......+.-.+..-..+ ..+...+..+...|+      +-..|....+.+-..+++
T Consensus        89 ~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~  166 (517)
T PF12569_consen   89 SDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLV  166 (517)
T ss_pred             ccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHH
Confidence             235677888888887653  2222222221111111111 233344444444443      333344444455555555


Q ss_pred             HHHHHC----C----------CCCCH--HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCCh
Q 045814          223 RQVLED----G----------LVPEN--TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSRKR  285 (427)
Q Consensus       223 ~~~~~~----~----------~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~  285 (427)
                      ......    +          -.|+.  .++.-+...|...|++++|.+.+++.+++.  |+ +..|..-.+.+-..|++
T Consensus       167 ~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~  244 (517)
T PF12569_consen  167 EEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDL  244 (517)
T ss_pred             HHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCH
Confidence            555432    1          12333  355667788889999999999999999884  44 56888888999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH--------HHHHHHHhhcCCHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY--------NSMIHGYCRIDNLEE  357 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~--------~~li~~~~~~g~~~~  357 (427)
                      .+|.+.++........ |-..-+-.+..+.++|++++|.+++....+.+..|-...+        .....+|.+.|++..
T Consensus       245 ~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~  323 (517)
T PF12569_consen  245 KEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMWFETECAEAYLRQGDYGL  323 (517)
T ss_pred             HHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHHHHHHHHHHHHHHhhHHH
Confidence            9999999999988665 7777788889999999999999999998877654433222        345678899999999


Q ss_pred             HHHHHHHHHH
Q 045814          358 AKRLHKEMLD  367 (427)
Q Consensus       358 a~~~~~~m~~  367 (427)
                      |++.|..+.+
T Consensus       324 ALk~~~~v~k  333 (517)
T PF12569_consen  324 ALKRFHAVLK  333 (517)
T ss_pred             HHHHHHHHHH
Confidence            9887776654

N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].

>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=4.3e-07  Score=83.06  Aligned_cols=263  Identities=12%  Similarity=0.019  Sum_probs=205.1

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCC-CCCHHhHHHHHHHHHhcCChhHH
Q 045814           80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGF-SPNPNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~-~~~~~~~~~li~~~~~~~~~~~A  157 (427)
                      +-..+++..-+++++.+....++  ....+..-|..+.+.|+..+...+=.+ ... +..+.+|-++.--|.-.|+..+|
T Consensus       254 ~y~~c~f~~c~kit~~lle~dpf--h~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~YYl~i~k~seA  331 (611)
T KOG1173|consen  254 LYYGCRFKECLKITEELLEKDPF--HLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCYYLMIGKYSEA  331 (611)
T ss_pred             HHHcChHHHHHHHhHHHHhhCCC--CcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHHHHHhcCcHHH
Confidence            33567888888999888776444  444555556688888877665554443 222 34577899999999999999999


Q ss_pred             HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc--c------hhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814          158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES--G------YLIQAFCNDGKVSEGYELLRQVLEDG  229 (427)
Q Consensus       158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~------~l~~~~~~~g~~~~a~~~~~~~~~~~  229 (427)
                      .+.|.+....+.. -...|-.....++-.+..+.|...+...-+.  |      .+.--|.+.++.+.|.+.|.+.....
T Consensus       332 Rry~SKat~lD~~-fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~ai~  410 (611)
T KOG1173|consen  332 RRYFSKATTLDPT-FGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALAIA  410 (611)
T ss_pred             HHHHHHHhhcCcc-ccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHHHHHHHHHHHhcC
Confidence            9999988765433 3568999999999999999999998877664  2      25556778999999999999988754


Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC----CC-C-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814          230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----NR-A-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD  303 (427)
Q Consensus       230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~  303 (427)
                      +. |+...+-+.-.....+.+.+|..+|+.....    +. . .-..+++.|..+|.+.+++++|+..|++......+ |
T Consensus       411 P~-Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k-~  488 (611)
T KOG1173|consen  411 PS-DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPK-D  488 (611)
T ss_pred             CC-cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCC-c
Confidence            33 7788888888888889999999999877632    11 1 12346888999999999999999999999887655 8


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+|.++.-.|...|+++.|.+.|.+....  .|+..+...++..+
T Consensus       489 ~~~~asig~iy~llgnld~Aid~fhKaL~l--~p~n~~~~~lL~~a  532 (611)
T KOG1173|consen  489 ASTHASIGYIYHLLGNLDKAIDHFHKALAL--KPDNIFISELLKLA  532 (611)
T ss_pred             hhHHHHHHHHHHHhcChHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence            899999999999999999999999998764  78877766666643

>PRK11189 lipoprotein NlpI; Provisional

Probab=99.02  E-value=7.1e-07  Score=79.67  Aligned_cols=197  Identities=14%  Similarity=0.041  Sum_probs=128.7

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHH
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLE  287 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~  287 (427)
                      .|...|+.++|...|++....... +...|+.+...+...|++++|...|++..+.... +..+|..+...+...|++++
T Consensus        73 ~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~l~~~g~~~e  150 (296)
T PRK11189         73 LYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAYLNRGIALYYGGRYEL  150 (296)
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHH
Confidence            344556666666666666665443 6778888999999999999999999998876432 45677788888888999999


Q ss_pred             HHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          288 AYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       288 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      |.+.|+...+..  |+..........+...++.++|...+.+..... .|+... ..+.  ....|+...+ +.++.+.+
T Consensus       151 A~~~~~~al~~~--P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~-~~~~--~~~lg~~~~~-~~~~~~~~  223 (296)
T PRK11189        151 AQDDLLAFYQDD--PNDPYRALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWG-WNIV--EFYLGKISEE-TLMERLKA  223 (296)
T ss_pred             HHHHHHHHHHhC--CCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhC-CccccH-HHHH--HHHccCCCHH-HHHHHHHh
Confidence            999999988764  333222222223445678899999997755432 333222 2222  2335555444 34444442


Q ss_pred             C---CC--C-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHH
Q 045814          368 K---GY--G-ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNT  414 (427)
Q Consensus       368 ~---~~--~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~  414 (427)
                      .   ..  . .....|..+...+...|++++|...|++..+.++ ||..-+..
T Consensus       224 ~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~-~~~~e~~~  275 (296)
T PRK11189        224 GATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNV-YNFVEHRY  275 (296)
T ss_pred             cCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-chHHHHHH
Confidence            2   11  1 1235788888999999999999999999887643 35544444

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.98  E-value=1.2e-05  Score=74.95  Aligned_cols=100  Identities=4%  Similarity=0.029  Sum_probs=51.8

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhC----------CCCC
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKER----------GYVP  302 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----------~~~p  302 (427)
                      .|..+...|-..|+++.|..+|++..+-..+--   ..+|..-...-.+..+++.|.++.++....          |-.|
T Consensus       389 Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~p  468 (835)
T KOG2047|consen  389 LWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEP  468 (835)
T ss_pred             HHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCc
Confidence            455566666667777777777776655432211   123444444445556666666666554321          0000


Q ss_pred             -------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045814          303 -------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL  335 (427)
Q Consensus       303 -------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  335 (427)
                             +...|...++.--..|-++....+|+.+.+..+
T Consensus       469 vQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLri  508 (835)
T KOG2047|consen  469 VQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRI  508 (835)
T ss_pred             HHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhc
Confidence                   223344444444455566666666666655543

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.97  E-value=2.4e-05  Score=72.33  Aligned_cols=363  Identities=15%  Similarity=0.122  Sum_probs=214.5

Q ss_pred             cccccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHH--HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHH
Q 045814           35 ESQQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREF--LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL  112 (427)
Q Consensus        35 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~--l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l  112 (427)
                      ..+..|+++++.+.+++...|+-..++.              ..+  +-..+.++.|+.+++.-.   +..-+..-+---
T Consensus        23 ~~~~e~e~a~k~~~Kil~~~pdd~~a~~--------------cKvValIq~~ky~~ALk~ikk~~---~~~~~~~~~fEK   85 (652)
T KOG2376|consen   23 GKNGEYEEAVKTANKILSIVPDDEDAIR--------------CKVVALIQLDKYEDALKLIKKNG---ALLVINSFFFEK   85 (652)
T ss_pred             ccchHHHHHHHHHHHHHhcCCCcHhhHh--------------hhHhhhhhhhHHHHHHHHHHhcc---hhhhcchhhHHH
Confidence            4456677778877777766554333322              112  224567777876655431   111111111111


Q ss_pred             HHHHHHcCChHHHHHHHHhcCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--------------------
Q 045814          113 FDSLVEARAFKVAMDFLDSTGFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG--------------------  171 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--------------------  171 (427)
                      .-+..+.+..++|+..++  +..++ ..+...-.+.+-+.|++++|+++|+.+.+.+..-                    
T Consensus        86 AYc~Yrlnk~Dealk~~~--~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~  163 (652)
T KOG2376|consen   86 AYCEYRLNKLDEALKTLK--GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQL  163 (652)
T ss_pred             HHHHHHcccHHHHHHHHh--cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHH
Confidence            223347888899988888  33333 3366666777888899999999998875443210                    


Q ss_pred             -------CHhhHHHHHH---HHHHcCChhHHHHHHHHHHhcc-----------------------hhHHHHHhcCChhHH
Q 045814          172 -------SIKTWNSALL---GCIKIDRTDLVWKLYHDLIESG-----------------------YLIQAFCNDGKVSEG  218 (427)
Q Consensus       172 -------~~~~~~~ll~---~~~~~~~~~~a~~~~~~~~~~~-----------------------~l~~~~~~~g~~~~a  218 (427)
                             ...+|..+.+   .++..|++..|+++++...+.+                       -+..++-..|+.++|
T Consensus       164 ~q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea  243 (652)
T KOG2376|consen  164 LQSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEA  243 (652)
T ss_pred             HHhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHH
Confidence                   1224444443   4567899999999998883321                       167778889999999


Q ss_pred             HHHHHHHHHCCCCCCHH----HHHHHHHHHHccCChhH--HHHHH------------HHH--------------------
Q 045814          219 YELLRQVLEDGLVPENT----AFNKLISRFCEKKNFGR--VSELL------------HTM--------------------  260 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~--a~~~~------------~~m--------------------  260 (427)
                      .+++...+..... |..    .-|.|+.. ..-.++-+  ++..+            ..+                    
T Consensus       244 ~~iy~~~i~~~~~-D~~~~Av~~NNLva~-~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn  321 (652)
T KOG2376|consen  244 SSIYVDIIKRNPA-DEPSLAVAVNNLVAL-SKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN  321 (652)
T ss_pred             HHHHHHHHHhcCC-CchHHHHHhcchhhh-ccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999998877543 322    22222211 11111100  00000            000                    


Q ss_pred             --------hhC--CCCCCHhhHHHHHHHHHh--cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          261 --------VAR--NRAPDNFTYEEVINGLCK--SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       261 --------~~~--~~~~~~~~~~~ll~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                              ...  +..| ...+.+++..+.+  ...+.++..++...-+....-...+.-.+++.....|+++.|..++.
T Consensus       322 k~~q~r~~~a~lp~~~p-~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~  400 (652)
T KOG2376|consen  322 KMDQVRELSASLPGMSP-ESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS  400 (652)
T ss_pred             hHHHHHHHHHhCCccCc-hHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence                    000  1122 2333444433322  22466677777666554333234456667788889999999999999


Q ss_pred             --------HHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCCh----hhHHHHHHHHHhcCCHHHHH
Q 045814          329 --------EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETT----VTYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       329 --------~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~----~~~~~li~~~~~~g~~~~A~  394 (427)
                              ...+.+..|-  +...++..+.+.++-+.|..++.+....  .-.+..    .++..+...-.+.|+.++|.
T Consensus       401 ~~~~~~~ss~~~~~~~P~--~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~  478 (652)
T KOG2376|consen  401 LFLESWKSSILEAKHLPG--TVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEAS  478 (652)
T ss_pred             HHhhhhhhhhhhhccChh--HHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHH
Confidence                    6666566664  4455666777888877788777776532  011122    23333344445789999999


Q ss_pred             HHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 045814          395 HLFEEMAQKGIFRDVITYNTLIQGYCKE  422 (427)
Q Consensus       395 ~~~~~m~~~g~~p~~~~~~~li~~~~~~  422 (427)
                      .+++++.+.. ++|..+...++.+|++.
T Consensus       479 s~leel~k~n-~~d~~~l~~lV~a~~~~  505 (652)
T KOG2376|consen  479 SLLEELVKFN-PNDTDLLVQLVTAYARL  505 (652)
T ss_pred             HHHHHHHHhC-CchHHHHHHHHHHHHhc
Confidence            9999999853 56889999999999875

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.93  E-value=1.1e-05  Score=74.57  Aligned_cols=198  Identities=8%  Similarity=-0.010  Sum_probs=124.1

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCH--hhHHHHHHHHHh
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDN--FTYEEVINGLCK  281 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~~ll~~~~~  281 (427)
                      +...+...|++++|...+++....... +...+..+...+...|++++|...+++...... .++.  ..|..+...+..
T Consensus       120 ~a~~~~~~G~~~~A~~~~~~al~~~p~-~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         120 LAFGLEEAGQYDRAEEAARRALELNPD-DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            344567788888888888888876543 567788888999999999999999998877543 2232  345567888999


Q ss_pred             cCChHHHHHHHHHHHhCCC-CCChhhH-H--HHHHHHHccCCHHHHHHH--HHHHHHcCC--CCCHHHHHHHHHHHhhcC
Q 045814          282 SRKRLEAYRVFNDLKERGY-VPDTVMY-T--TVIHGLCKMGWLGDARKM--WFEMIHKGL--LPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       282 ~~~~~~a~~~~~~m~~~~~-~p~~~~~-~--~li~~~~~~g~~~~a~~~--~~~m~~~~~--~p~~~~~~~li~~~~~~g  353 (427)
                      .|++++|..++++...... .+..... +  .++.-+...|..+.+...  +........  ............++...|
T Consensus       199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  278 (355)
T cd05804         199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG  278 (355)
T ss_pred             CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence            9999999999999864422 1111111 1  223333444543333332  211111111  111122235667788899


Q ss_pred             CHHHHHHHHHHHHHCCCCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          354 NLEEAKRLHKEMLDKGYGE--------TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p--------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +.+.|..+++.+.......        .....-...-++...|++++|.+.+......
T Consensus       279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999887642210        1112222223456889999999999887764

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.91  E-value=1.6e-05  Score=70.32  Aligned_cols=272  Identities=14%  Similarity=0.034  Sum_probs=142.8

Q ss_pred             HHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814           90 IRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPN-SLELYIQCLCESGLIEEAFCAFSKLKEM  167 (427)
Q Consensus        90 ~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~  167 (427)
                      .+.|-.+....-++-|+.....+.+.+...|+.++|...|++. ...|... ........+.+.|+.+....+...+...
T Consensus       216 ~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~  295 (564)
T KOG1174|consen  216 SQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAK  295 (564)
T ss_pred             hhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhh
Confidence            3334444334445666777777777777777777777777662 2233322 1222223334556666655555555433


Q ss_pred             CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch------h--HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHH
Q 045814          168 GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------L--IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNK  239 (427)
Q Consensus       168 g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------l--~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~  239 (427)
                      .- -+...|..-........++..|+.+-++.++.+.      +  ...+...|+.++|.-.|+......+ .+...|..
T Consensus       296 ~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~Lap-~rL~~Y~G  373 (564)
T KOG1174|consen  296 VK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLAP-YRLEIYRG  373 (564)
T ss_pred             hh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcch-hhHHHHHH
Confidence            11 1233344444444455566666666666555421      2  2234455666666666666555432 25556666


Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHH-HHHH-hcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHc
Q 045814          240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI-NGLC-KSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCK  316 (427)
Q Consensus       240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-~~~~-~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~  316 (427)
                      |+..|...|+..+|...-...... +..+..+.+.+. ..+. ...--++|.+++++..+.  .|+ ....+.+...|..
T Consensus       374 L~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~  450 (564)
T KOG1174|consen  374 LFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQV  450 (564)
T ss_pred             HHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHh
Confidence            666666666666665554443332 122333333331 2221 222335566666655443  333 2244555555666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .|..+.++.++++....  .||....+.|.+.+...+.+++|.+.|......
T Consensus       451 Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  451 EGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             hCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            66666666666666553  566666666666666666666666666665543

>PRK11189 lipoprotein NlpI; Provisional

Probab=98.90  E-value=1.9e-06  Score=76.89  Aligned_cols=216  Identities=13%  Similarity=0.006  Sum_probs=130.5

Q ss_pred             cCChHHHHHHHHhc----CCCCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHH
Q 045814          119 ARAFKVAMDFLDST----GFSPN--PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV  192 (427)
Q Consensus       119 ~~~~~~a~~~~~~~----~~~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  192 (427)
                      .+..+.++..+.+.    ...|+  ...|..+...|...|+.++|...|++..+.... +...|+.+...+...|++++|
T Consensus        39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~-~~~a~~~lg~~~~~~g~~~~A  117 (296)
T PRK11189         39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALRPD-MADAYNYLGIYLTQAGNFDAA  117 (296)
T ss_pred             chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHCCCHHHH
Confidence            34555555555442    23333  345777777888888888888888888876543 567777766666666665555


Q ss_pred             HHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH
Q 045814          193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY  272 (427)
Q Consensus       193 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~  272 (427)
                      ...|+                          +..+.... +..+|..+..++...|++++|.+.++...+...  +....
T Consensus       118 ~~~~~--------------------------~Al~l~P~-~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P--~~~~~  168 (296)
T PRK11189        118 YEAFD--------------------------SVLELDPT-YNYAYLNRGIALYYGGRYELAQDDLLAFYQDDP--NDPYR  168 (296)
T ss_pred             HHHHH--------------------------HHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC--CCHHH
Confidence            55544                          44443322 456677777778888888888888888877643  22211


Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---CC--CC-CHHHHHHHH
Q 045814          273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK---GL--LP-NEYTYNSMI  346 (427)
Q Consensus       273 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~--~p-~~~~~~~li  346 (427)
                      ......+...+++++|...|.+..... .|+...+ .  ......|+..++ ..+..+.+.   .+  .| ...+|..+.
T Consensus       169 ~~~~~l~~~~~~~~~A~~~l~~~~~~~-~~~~~~~-~--~~~~~lg~~~~~-~~~~~~~~~~~~~~~l~~~~~ea~~~Lg  243 (296)
T PRK11189        169 ALWLYLAESKLDPKQAKENLKQRYEKL-DKEQWGW-N--IVEFYLGKISEE-TLMERLKAGATDNTELAERLCETYFYLA  243 (296)
T ss_pred             HHHHHHHHccCCHHHHHHHHHHHHhhC-CccccHH-H--HHHHHccCCCHH-HHHHHHHhcCCCcHHHHHHHHHHHHHHH
Confidence            222223345677888888886654332 2232222 2  222234555443 244444322   11  11 234677888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHCC
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDKG  369 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~~  369 (427)
                      ..+.+.|++++|...|++..+.+
T Consensus       244 ~~~~~~g~~~~A~~~~~~Al~~~  266 (296)
T PRK11189        244 KYYLSLGDLDEAAALFKLALANN  266 (296)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhC
Confidence            88888899999999998888764

>PF12854 PPR_1: PPR repeat

Probab=98.86  E-value=3.5e-09  Score=59.82  Aligned_cols=32  Identities=59%  Similarity=1.007  Sum_probs=21.7

Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814          369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM  400 (427)
Q Consensus       369 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  400 (427)
                      |+.||..+|++||.+||+.|++++|.++|++|
T Consensus         2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M   33 (34)
T PF12854_consen    2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM   33 (34)
T ss_pred             CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence            56666666666666666666666666666666

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.82  E-value=0.00012  Score=68.68  Aligned_cols=259  Identities=13%  Similarity=0.094  Sum_probs=153.5

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCcCHhhHHHHHH------HHHHcCChhHHHHHHHHHHhc--------c
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGSIKTWNSALL------GCIKIDRTDLVWKLYHDLIES--------G  203 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~------~~~~~~~~~~a~~~~~~~~~~--------~  203 (427)
                      ..|..+..++.-.|+...|..+.+...+.. -.|+...|.-...      ...+.|..+.|.+.+......        -
T Consensus       144 a~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e  223 (700)
T KOG1156|consen  144 ASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEE  223 (700)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhh
Confidence            345566666667788888888888777654 2455555543332      345677777777666544333        2


Q ss_pred             hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHccCChhHHH-HHHHHHhh-------------------
Q 045814          204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI-SRFCEKKNFGRVS-ELLHTMVA-------------------  262 (427)
Q Consensus       204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li-~~~~~~~~~~~a~-~~~~~m~~-------------------  262 (427)
                      .-...+.+.+++++|..++..++...  ||...|...+ .++.+-.+..++. .+|....+                   
T Consensus       224 ~ka~l~~kl~~lEeA~~~y~~Ll~rn--Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~e  301 (700)
T KOG1156|consen  224 TKADLLMKLGQLEEAVKVYRRLLERN--PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRHECPRRLPLSVLNGE  301 (700)
T ss_pred             hHHHHHHHHhhHHhHHHHHHHHHhhC--chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCcccccchhccHHHhCcc
Confidence            35667788999999999999998864  5555555444 4443322322222 44443322                   


Q ss_pred             ---------------CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH----hCC----------CCCChh--hHHHHH
Q 045814          263 ---------------RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK----ERG----------YVPDTV--MYTTVI  311 (427)
Q Consensus       263 ---------------~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~----------~~p~~~--~~~~li  311 (427)
                                     .|+++   ++..+...|-...+.+-.+++...+.    ..|          -.|++.  ++-.++
T Consensus       302 el~~~vdkyL~~~l~Kg~p~---vf~dl~SLyk~p~k~~~le~Lvt~y~~~L~~~~~f~~~D~~~~E~PttllWt~y~la  378 (700)
T KOG1156|consen  302 ELKEIVDKYLRPLLSKGVPS---VFKDLRSLYKDPEKVAFLEKLVTSYQHSLSGTGMFNFLDDGKQEPPTTLLWTLYFLA  378 (700)
T ss_pred             hhHHHHHHHHHHHhhcCCCc---hhhhhHHHHhchhHhHHHHHHHHHHHhhcccccCCCcccccccCCchHHHHHHHHHH
Confidence                           22211   12222222211111111111111111    111          134444  344567


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT  390 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  390 (427)
                      +.+-..|+++.|..+++.....  .|+. ..|..=.+.+...|++++|..++++..+.+. +|...=..-..-..++++.
T Consensus       379 qh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~-aDR~INsKcAKYmLrAn~i  455 (700)
T KOG1156|consen  379 QHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDT-ADRAINSKCAKYMLRANEI  455 (700)
T ss_pred             HHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccc-hhHHHHHHHHHHHHHcccc
Confidence            7788889999999999888765  5553 3444445778888999999999998887643 3555444556666788899


Q ss_pred             HHHHHHHHHHHHCCC
Q 045814          391 DEAYHLFEEMAQKGI  405 (427)
Q Consensus       391 ~~A~~~~~~m~~~g~  405 (427)
                      ++|.++.....+.|.
T Consensus       456 ~eA~~~~skFTr~~~  470 (700)
T KOG1156|consen  456 EEAEEVLSKFTREGF  470 (700)
T ss_pred             HHHHHHHHHhhhccc
Confidence            999998888887764

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.80  E-value=2.1e-07  Score=81.95  Aligned_cols=249  Identities=14%  Similarity=0.110  Sum_probs=144.3

Q ss_pred             HHHHHcCChHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhH
Q 045814          114 DSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL  191 (427)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  191 (427)
                      +-+.-.|++..++.-.+..+..+  +......+.+++...|+.+.++   .++.... .|.......+...+..      
T Consensus         9 rn~fy~G~Y~~~i~e~~~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~------   78 (290)
T PF04733_consen    9 RNQFYLGNYQQCINEASLKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSS------   78 (290)
T ss_dssp             HHHHCTT-HHHHCHHHHCHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCT------
T ss_pred             HHHHHhhhHHHHHHHhhccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhC------
Confidence            33445677777775444222222  2334556677777777766443   3333322 4444443332222211      


Q ss_pred             HHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814          192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF  270 (427)
Q Consensus       192 a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  270 (427)
                                          .++-+.++.-+++........ +..........+...|++++|+++++.-      .+..
T Consensus        79 --------------------~~~~e~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE  132 (290)
T PF04733_consen   79 --------------------PSDKESALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLE  132 (290)
T ss_dssp             --------------------STTHHCHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHH
T ss_pred             --------------------ccchHHHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------Cccc
Confidence                                122233333333333222222 2222223334566678888888887642      2456


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      .....+..|.+.++++.|.+.++.|.+.+  .| .+...+..++..    ...+.+|..+|+++... ..++..+.+.+.
T Consensus       133 ~~al~Vqi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A  208 (290)
T PF04733_consen  133 LLALAVQILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLA  208 (290)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHH
Confidence            66777888888999999999998887652  23 344445554443    33688899999987654 556778888888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHC
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT-DEAYHLFEEMAQK  403 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~m~~~  403 (427)
                      .++...|++++|.+++.+..+.+.. +..+...++.+....|+. +.+.+++.++...
T Consensus       209 ~~~l~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  209 VCHLQLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             HHHHHCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             HHHHHhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            8888889999999988887765433 566777777777777877 6677788887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>PF12854 PPR_1: PPR repeat

Probab=98.78  E-value=8.4e-09  Score=58.26  Aligned_cols=27  Identities=41%  Similarity=0.797  Sum_probs=10.0

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          302 PDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      ||..||+++|.+|++.|++++|.++|+
T Consensus         5 Pd~~ty~~lI~~~Ck~G~~~~A~~l~~   31 (34)
T PF12854_consen    5 PDVVTYNTLIDGYCKAGRVDEAFELFD   31 (34)
T ss_pred             CcHhHHHHHHHHHHHCCCHHHHHHHHH
Confidence            333333333333333333333333333

>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=98.78  E-value=5.2e-07  Score=79.51  Aligned_cols=248  Identities=14%  Similarity=0.151  Sum_probs=148.6

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814           82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF  161 (427)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  161 (427)
                      ..|++..++.-.+ . ....-..+.....-+.+++...|+++.++.-+.... .|.......+...+...++-+.+..-+
T Consensus        13 y~G~Y~~~i~e~~-~-~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l~~l   89 (290)
T PF04733_consen   13 YLGNYQQCINEAS-L-KSFSPENKLERDFYQYRSYIALGQYDSVLSEIKKSS-SPELQAVRLLAEYLSSPSDKESALEEL   89 (290)
T ss_dssp             CTT-HHHHCHHHH-C-HTSTCHHHHHHHHHHHHHHHHTT-HHHHHHHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHHHHH
T ss_pred             HhhhHHHHHHHhh-c-cCCCchhHHHHHHHHHHHHHHcCChhHHHHHhccCC-ChhHHHHHHHHHHHhCccchHHHHHHH
Confidence            3567777765554 2 211112234556667788899999887776665544 666666655555554434455555554


Q ss_pred             HHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045814          162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI  241 (427)
Q Consensus       162 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  241 (427)
                      ++....+..++..++. ++.+                        ..+...|++++|++++...      .+.......+
T Consensus        90 ~~~~~~~~~~~~~~~~-~~~A------------------------~i~~~~~~~~~AL~~l~~~------~~lE~~al~V  138 (290)
T PF04733_consen   90 KELLADQAGESNEIVQ-LLAA------------------------TILFHEGDYEEALKLLHKG------GSLELLALAV  138 (290)
T ss_dssp             HHCCCTS---CHHHHH-HHHH------------------------HHHCCCCHHHHHHCCCTTT------TCHHHHHHHH
T ss_pred             HHHHHhccccccHHHH-HHHH------------------------HHHHHcCCHHHHHHHHHcc------CcccHHHHHH
Confidence            4443332222222222 2211                        2234455566665555321      2556667778


Q ss_pred             HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHH----HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 045814          242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGL----CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM  317 (427)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~----~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  317 (427)
                      ..|.+.++++.|.+.++.|.+.+  .| .+...+..++    ...+++.+|..+|+++.+. ..+++.+.+.+..++...
T Consensus       139 qi~L~~~R~dlA~k~l~~~~~~~--eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~  214 (290)
T PF04733_consen  139 QILLKMNRPDLAEKELKNMQQID--ED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQL  214 (290)
T ss_dssp             HHHHHTT-HHHHHHHHHHHHCCS--CC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC--Cc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHh
Confidence            88888899999999998887663  23 3333344433    3344688899999998654 445777888888888889


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHC
Q 045814          318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL-EEAKRLHKEMLDK  368 (427)
Q Consensus       318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~  368 (427)
                      |++++|..++.+....+.. +..+...++.+....|+. +.+.+++.++...
T Consensus       215 ~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~  265 (290)
T PF04733_consen  215 GHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQS  265 (290)
T ss_dssp             T-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred             CCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence            9999999998888765433 566777777777777776 6677888887764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.

>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=98.77  E-value=4.9e-05  Score=67.38  Aligned_cols=263  Identities=11%  Similarity=-0.049  Sum_probs=185.9

Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------h
Q 045814          133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------Y  204 (427)
Q Consensus       133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~  204 (427)
                      -.+-|+.....+..++...|+.++|...|+.....++. +........-.+...|+++....+...+....        .
T Consensus       227 ~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy-~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV  305 (564)
T KOG1174|consen  227 TLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPD-NVEAMDLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFV  305 (564)
T ss_pred             cCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChh-hhhhHHHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhh
Confidence            33456667888889999999999999999888765322 22223333344567777777777776665442        1


Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      -.......++++.|+.+-++.++.... +...|-.-...+...++.++|.-.|....... +-+...|.-|+..|...|+
T Consensus       306 ~~~~l~~~K~~~rAL~~~eK~I~~~~r-~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~  383 (564)
T KOG1174|consen  306 HAQLLYDEKKFERALNFVEKCIDSEPR-NHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKR  383 (564)
T ss_pred             hhhhhhhhhhHHHHHHHHHHHhccCcc-cchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhch
Confidence            233445677888888888888775543 55566665677788899999988888876653 2367889999999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHH-HHHHc-cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVI-HGLCK-MGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li-~~~~~-~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~  361 (427)
                      +.+|.-.-+...+.- .-+..+.+.+. ..|.- -.--++|.+++++-.+.  .|+ ....+.+...|...|..+.+..+
T Consensus       384 ~kEA~~~An~~~~~~-~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~L  460 (564)
T KOG1174|consen  384 FKEANALANWTIRLF-QNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKL  460 (564)
T ss_pred             HHHHHHHHHHHHHHh-hcchhhhhhhcceeeccCchhHHHHHHHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHH
Confidence            999877666544321 11444444332 22221 22247888888887765  455 34566777788899999999999


Q ss_pred             HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          362 HKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       362 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ++.....  .||....+.|.+.+...+.+++|.+.|......
T Consensus       461 Le~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~  500 (564)
T KOG1174|consen  461 LEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ  500 (564)
T ss_pred             HHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            9998864  679999999999999999999999999888764

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.75  E-value=5.8e-06  Score=69.97  Aligned_cols=311  Identities=14%  Similarity=0.139  Sum_probs=188.8

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCC-CHhhHHHHHHHHHHcCChHHHHHHHHhcCC-CCCHHhHHHH-HHHHHhcCChhHHH
Q 045814           82 QQNNVLLSIRFFQWLHSHYGFSP-DLVSCNVLFDSLVEARAFKVAMDFLDSTGF-SPNPNSLELY-IQCLCESGLIEEAF  158 (427)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~l-i~~~~~~~~~~~A~  158 (427)
                      +..++..|++++....+.   .| +....+.+...|....++..|-+.+++.+. -|...-|... .+.+-+.+.+..|+
T Consensus        22 ~d~ry~DaI~~l~s~~Er---~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADAL   98 (459)
T KOG4340|consen   22 RDARYADAIQLLGSELER---SPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADAL   98 (459)
T ss_pred             HHhhHHHHHHHHHHHHhc---CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHH
Confidence            345566666666655433   34 667777777777788888888888887543 4555555443 45666778888888


Q ss_pred             HHHHHHHhcCCCcCHhhHHHHHHH--HHHcCChhHHHHHHHHHHhcch------hHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814          159 CAFSKLKEMGVFGSIKTWNSALLG--CIKIDRTDLVWKLYHDLIESGY------LIQAFCNDGKVSEGYELLRQVLEDGL  230 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~~~~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~------l~~~~~~~g~~~~a~~~~~~~~~~~~  230 (427)
                      ++...|...   |+...-..-+.+  ....+++..+..+.++....|.      ......+.|++++|++-|....+-+-
T Consensus        99 rV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCllykegqyEaAvqkFqaAlqvsG  175 (459)
T KOG4340|consen   99 RVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLLYKEGQYEAAVQKFQAALQVSG  175 (459)
T ss_pred             HHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchheeeccccHHHHHHHHHHHHhhcC
Confidence            888777642   222222222222  2246677777777777775431      23334578899999999998887544


Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-------------CCHh--------hHHHHHH-------HHHhc
Q 045814          231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-------------PDNF--------TYEEVIN-------GLCKS  282 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-------------~~~~--------~~~~ll~-------~~~~~  282 (427)
                      -.....||..+.. .+.|++..|.+...+++++|++             ||+.        .-+.++.       .+.+.
T Consensus       176 yqpllAYniALaH-y~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~  254 (459)
T KOG4340|consen  176 YQPLLAYNLALAH-YSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQL  254 (459)
T ss_pred             CCchhHHHHHHHH-HhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhc
Confidence            4456778876644 4568889999999998887652             1221        1122222       34577


Q ss_pred             CChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814          283 RKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  361 (427)
                      |+++.|.+-+..|.-+ .-..|++|...+.-.-. .+++.+..+-+.-+...+.. ...||..++-.||+..-++-|-.+
T Consensus       255 ~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n~-~~~p~~g~~KLqFLL~~nPf-P~ETFANlLllyCKNeyf~lAADv  332 (459)
T KOG4340|consen  255 RNYEAAQEALTDMPPRAEEELDPVTLHNQALMNM-DARPTEGFEKLQFLLQQNPF-PPETFANLLLLYCKNEYFDLAADV  332 (459)
T ss_pred             ccHHHHHHHhhcCCCcccccCCchhhhHHHHhcc-cCCccccHHHHHHHHhcCCC-ChHHHHHHHHHHhhhHHHhHHHHH
Confidence            8888888888888432 22345665544433222 34455555555555555443 346888888888888888888887


Q ss_pred             HHHHHHCCCC-CChhhHHHHHHHHH-hcCCHHHHHHHHHHHHH
Q 045814          362 HKEMLDKGYG-ETTVTYNTLIAGLC-LHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       362 ~~~m~~~~~~-p~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~  402 (427)
                      +.+-...-.. .+...|+ |++++. ..-..++|++-++.+..
T Consensus       333 LAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~  374 (459)
T KOG4340|consen  333 LAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAG  374 (459)
T ss_pred             HhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHH
Confidence            7653322111 2333443 334443 34567777777666543

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.74  E-value=0.00014  Score=66.72  Aligned_cols=172  Identities=9%  Similarity=0.074  Sum_probs=122.1

Q ss_pred             hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       250 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      .+....+++++...-..--..+|...|+.-.+..-+..|..+|.+..+.+..+ ++..+++++.-||. ++..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            44444555555443222223577888888888888999999999998887776 77788888888875 67789999998


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC---
Q 045814          329 EMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK---  403 (427)
Q Consensus       329 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---  403 (427)
                      --.+. ..-+..-....+..+...++-..+..+|++....++.||  ..+|..+|+--..-|+...+.++-+++...   
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~  504 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPA  504 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcch
Confidence            76554 122333445677888888999999999999998866655  478999999889999999999988877654   


Q ss_pred             CCCCCHhHHHHHHHHHHhcC
Q 045814          404 GIFRDVITYNTLIQGYCKEG  423 (427)
Q Consensus       404 g~~p~~~~~~~li~~~~~~g  423 (427)
                      ...|...+-..+++.|.-.+
T Consensus       505 ~qe~~~~~~~~~v~RY~~~d  524 (656)
T KOG1914|consen  505 DQEYEGNETALFVDRYGILD  524 (656)
T ss_pred             hhcCCCChHHHHHHHHhhcc
Confidence            12333344455555554443

>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals

Probab=98.73  E-value=0.00012  Score=67.69  Aligned_cols=191  Identities=10%  Similarity=-0.012  Sum_probs=108.7

Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCC-CCC--HHHHHHHHHHHHc
Q 045814          178 SALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGL-VPE--NTAFNKLISRFCE  246 (427)
Q Consensus       178 ~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~--~~~~~~li~~~~~  246 (427)
                      .+...+...|++++|...+++..+.+        .+...+...|++++|...+++...... .++  ...|..+...+..
T Consensus       119 ~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~  198 (355)
T cd05804         119 MLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLE  198 (355)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHH
Confidence            34445556666666666666655542        245566667777777777777665432 122  2345567888999


Q ss_pred             cCChhHHHHHHHHHhhCCC-CCCHhhH-H--HHHHHHHhcCChHHHHHH--H-HHHHhCCC-CCChhhHHHHHHHHHccC
Q 045814          247 KKNFGRVSELLHTMVARNR-APDNFTY-E--EVINGLCKSRKRLEAYRV--F-NDLKERGY-VPDTVMYTTVIHGLCKMG  318 (427)
Q Consensus       247 ~~~~~~a~~~~~~m~~~~~-~~~~~~~-~--~ll~~~~~~~~~~~a~~~--~-~~m~~~~~-~p~~~~~~~li~~~~~~g  318 (427)
                      .|++++|..++++...... .+..... +  .++.-+...|....+.+.  . ........ ............++...|
T Consensus       199 ~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~  278 (355)
T cd05804         199 RGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAG  278 (355)
T ss_pred             CCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCC
Confidence            9999999999999864432 1112111 1  233333444543333332  2 21111100 111122225667778899


Q ss_pred             CHHHHHHHHHHHHHcCCCC---C---HHHHHHHH--HHHhhcCCHHHHHHHHHHHHHC
Q 045814          319 WLGDARKMWFEMIHKGLLP---N---EYTYNSMI--HGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       319 ~~~~a~~~~~~m~~~~~~p---~---~~~~~~li--~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +.++|..+++.+......+   .   ..+-..++  -++...|+.++|.+.+......
T Consensus       279 ~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~  336 (355)
T cd05804         279 DKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDD  336 (355)
T ss_pred             CHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            9999999999987643221   1   11112222  3456889999999999887754

A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.

>KOG2047 consensus mRNA splicing factor [RNA processing and modification]

Probab=98.73  E-value=3.1e-05  Score=72.33  Aligned_cols=299  Identities=9%  Similarity=0.096  Sum_probs=196.1

Q ss_pred             hHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh----cCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814           86 VLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS----TGFSPNPNSLELYIQCLCESGLIEEAFCAF  161 (427)
Q Consensus        86 ~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~----~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  161 (427)
                      .+.++.+.+.|         +..|-..+..+.++|++......|+.    +++.-....|...+......+-++.+.++|
T Consensus        91 ~er~lv~mHkm---------pRIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvy  161 (835)
T KOG2047|consen   91 FERCLVFMHKM---------PRIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVY  161 (835)
T ss_pred             HHHHHHHHhcC---------CHHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHH
Confidence            34555555555         34566667777888988888888875    344445668999999999999999999999


Q ss_pred             HHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHh------------------cCChhHHHHHHH
Q 045814          162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN------------------DGKVSEGYELLR  223 (427)
Q Consensus       162 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~------------------~g~~~~a~~~~~  223 (427)
                      .+..+.    ++..-+--+..+++.++.++|.+.+..++........+.+                  .+.--....+++
T Consensus       162 rRYLk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR  237 (835)
T KOG2047|consen  162 RRYLKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIR  237 (835)
T ss_pred             HHHHhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHH
Confidence            998874    4445777788889999999999999888766332222211                  111122233333


Q ss_pred             HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC--------------------
Q 045814          224 QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR--------------------  283 (427)
Q Consensus       224 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~--------------------  283 (427)
                      .+...-...-...|++|.+.|.+.|.+++|.++|++....  ..++.-|+.+.++|..-.                    
T Consensus       238 ~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed  315 (835)
T KOG2047|consen  238 GGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEED  315 (835)
T ss_pred             hhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhh
Confidence            3332211112347899999999999999999999988776  334556666666665421                    


Q ss_pred             --ChHHHHHHHHHHHhCCC-----------CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC------HHHHHH
Q 045814          284 --KRLEAYRVFNDLKERGY-----------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN------EYTYNS  344 (427)
Q Consensus       284 --~~~~a~~~~~~m~~~~~-----------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~  344 (427)
                        +++-...-|+.+.....           .-++..|..-+.  ...|+..+-...|.++.+. +.|.      ...|..
T Consensus       316 ~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~  392 (835)
T KOG2047|consen  316 DVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVE  392 (835)
T ss_pred             hhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHH
Confidence              11222333333332210           012333333222  2346677888888888765 3332      246788


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          345 MIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      +.+.|-..|+++.|..+|++..+...+--   ..+|..-...-.++.+++.|++++++...
T Consensus       393 faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~  453 (835)
T KOG2047|consen  393 FAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATH  453 (835)
T ss_pred             HHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhc
Confidence            88999999999999999999987644311   34566666666788899999999887754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.70  E-value=3.6e-06  Score=77.47  Aligned_cols=243  Identities=14%  Similarity=0.094  Sum_probs=172.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChh
Q 045814          145 IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVS  216 (427)
Q Consensus       145 i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~  216 (427)
                      ..-+.+.|++.+|.-.|+...+..+. +...|..|.......++-..|+.-+++..+...        |.-.|...|.-.
T Consensus       292 G~~lm~nG~L~~A~LafEAAVkqdP~-haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~  370 (579)
T KOG1125|consen  292 GCNLMKNGDLSEAALAFEAAVKQDPQ-HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN  370 (579)
T ss_pred             HHHHHhcCCchHHHHHHHHHHhhChH-HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence            34456788888999999888887666 788888888888888888888888888877642        666777888888


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHHccCChhHHHHHHHHHhh-CCCCCCHhhHHHHHHHHHhcCC
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLI-----------SRFCEKKNFGRVSELLHTMVA-RNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li-----------~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      .|+..|+..+...++     |..+.           ..+.....+....++|-++.. .+..+|..+...|.-.|.-.|+
T Consensus       371 ~Al~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e  445 (579)
T KOG1125|consen  371 QALKMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE  445 (579)
T ss_pred             HHHHHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence            888888877654322     11100           111222223445555555443 3434677788888888889999


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHK  363 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~  363 (427)
                      +++|...|+.++..... |...||.|...++...+.++|+.-|++.++.  +|+ +.....|.-+|...|.+++|.+.|-
T Consensus       446 fdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL  522 (579)
T KOG1125|consen  446 FDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLL  522 (579)
T ss_pred             HHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHH
Confidence            99999999998877554 7789999999999999999999999999886  555 3344445667889999999998887


Q ss_pred             HHHHC---------CCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045814          364 EMLDK---------GYGETTVTYNTLIAGLCLHGRTDEAYHL  396 (427)
Q Consensus       364 ~m~~~---------~~~p~~~~~~~li~~~~~~g~~~~A~~~  396 (427)
                      ..+..         +..++..+|.+|=.++.-.++.|-+.+.
T Consensus       523 ~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a  564 (579)
T KOG1125|consen  523 EALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA  564 (579)
T ss_pred             HHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence            65532         1122345777777777777777644443

>KOG4340 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.70  E-value=5.2e-06  Score=70.26  Aligned_cols=290  Identities=13%  Similarity=0.100  Sum_probs=190.8

Q ss_pred             CCCHhhHHHHHHHHHHcCChHHHHHHHHhcC-CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH-H
Q 045814          103 SPDLVSCNVLFDSLVEARAFKVAMDFLDSTG-FSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS-A  179 (427)
Q Consensus       103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~-l  179 (427)
                      .....-+.+++..+.+..+++.|++++...+ ..| +....+.|..+|-...++..|-..|+.+...  .|...-|.. -
T Consensus         7 ~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~   84 (459)
T KOG4340|consen    7 QIPEGEFTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQ   84 (459)
T ss_pred             cCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHH
Confidence            3334456777878889999999999998643 234 6778999999999999999999999999774  444444432 2


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcchhHHH--------HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814          180 LLGCIKIDRTDLVWKLYHDLIESGYLIQA--------FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG  251 (427)
Q Consensus       180 l~~~~~~~~~~~a~~~~~~~~~~~~l~~~--------~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  251 (427)
                      ...+.+.+.+..|+++...|.....+.+-        ....+++..+..++++....|   +..+.+.......+.|+++
T Consensus        85 AQSLY~A~i~ADALrV~~~~~D~~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyE  161 (459)
T KOG4340|consen   85 AQSLYKACIYADALRVAFLLLDNPALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYE  161 (459)
T ss_pred             HHHHHHhcccHHHHHHHHHhcCCHHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHH
Confidence            34556778888888888888775433222        224567777777777665433   3345555555567889999


Q ss_pred             HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-------------Chh--------hHHHH
Q 045814          252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-------------DTV--------MYTTV  310 (427)
Q Consensus       252 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-------------~~~--------~~~~l  310 (427)
                      +|.+-|+...+-+--.....|+..+..| +.|+++.|++...++.++|++-             |+.        .-+.+
T Consensus       162 aAvqkFqaAlqvsGyqpllAYniALaHy-~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal  240 (459)
T KOG4340|consen  162 AAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSAL  240 (459)
T ss_pred             HHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHH
Confidence            9999998877755433456777766554 6688899999999998888762             111        11122


Q ss_pred             HH-------HHHccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814          311 IH-------GLCKMGWLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA  382 (427)
Q Consensus       311 i~-------~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  382 (427)
                      +.       .+.+.|+.+.|.+-+-+|.-. ....|+.|...+.-.= -.+++....+-+.-+..... -...||..++-
T Consensus       241 ~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP-fP~ETFANlLl  318 (459)
T KOG4340|consen  241 VEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP-FPPETFANLLL  318 (459)
T ss_pred             HHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC-CChHHHHHHHH
Confidence            22       234567777777777666422 2344666665543221 22345555555555555432 34577888888


Q ss_pred             HHHhcCCHHHHHHHHHHH
Q 045814          383 GLCLHGRTDEAYHLFEEM  400 (427)
Q Consensus       383 ~~~~~g~~~~A~~~~~~m  400 (427)
                      .||++.-++-|-.++-+=
T Consensus       319 lyCKNeyf~lAADvLAEn  336 (459)
T KOG4340|consen  319 LYCKNEYFDLAADVLAEN  336 (459)
T ss_pred             HHhhhHHHhHHHHHHhhC
Confidence            888888888887777553

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.68  E-value=3.1e-06  Score=79.90  Aligned_cols=217  Identities=14%  Similarity=0.097  Sum_probs=171.5

Q ss_pred             hhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHH
Q 045814          174 KTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRV  253 (427)
Q Consensus       174 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a  253 (427)
                      ..-..+...+...|-...|..+|+++..+.-.+..|+..|+..+|..+..+..+  -+||...|..+.+.....--+++|
T Consensus       399 q~q~~laell~slGitksAl~I~Erlemw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~yEka  476 (777)
T KOG1128|consen  399 QLQRLLAELLLSLGITKSALVIFERLEMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLYEKA  476 (777)
T ss_pred             hHHHHHHHHHHHcchHHHHHHHHHhHHHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHHHHH
Confidence            344556677888999999999999999999999999999999999998888877  457888888888887777778888


Q ss_pred             HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       254 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .++.+..-.+       .-..+.....+.++++++.+.|+.-.+...- -..+|-.+..+..+.++++.|.+.|......
T Consensus       477 wElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~rcvtL  548 (777)
T KOG1128|consen  477 WELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFHRCVTL  548 (777)
T ss_pred             HHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHHHHhhc
Confidence            8888754332       1111112223478999999999887665432 5568888888888999999999999888775


Q ss_pred             CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          334 GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       334 ~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                        .|| ...||.+-.+|.+.|+-.+|...+++..+.+ .-+...|...+....+.|.+++|.+.+.++.+.
T Consensus       549 --~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  549 --EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             --CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence              444 6689999999999999999999999999887 346777888888888999999999999887653

>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]

Probab=98.65  E-value=2.1e-06  Score=81.00  Aligned_cols=221  Identities=14%  Similarity=0.100  Sum_probs=181.3

Q ss_pred             CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 045814          101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL  180 (427)
Q Consensus       101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll  180 (427)
                      +++|--..-..+.+.+...|-...|..++++.      ..|.-+|.+|+..|+..+|..+...-.+  -+||...|..+.
T Consensus       393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LG  464 (777)
T KOG1128|consen  393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLG  464 (777)
T ss_pred             CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhh
Confidence            34455555566778888999999999999874      4688889999999999999999887777  378999999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhc--chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          181 LGCIKIDRTDLVWKLYHDLIES--GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       181 ~~~~~~~~~~~a~~~~~~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      +......-++.|.++++..-..  -.+.......++++++.+.|+.-.....- -..+|-.+-.+..+.++++.|.+.|.
T Consensus       465 Dv~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~npl-q~~~wf~~G~~ALqlek~q~av~aF~  543 (777)
T KOG1128|consen  465 DVLHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEINPL-QLGTWFGLGCAALQLEKEQAAVKAFH  543 (777)
T ss_pred             hhccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhcCcc-chhHHHhccHHHHHHhhhHHHHHHHH
Confidence            9988888889999999876654  22333345579999999999987765433 55688888888899999999999999


Q ss_pred             HHhhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          259 TMVARNRAPD-NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       259 ~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .-...  .|| ...||.+-.+|.+.++-.+|...+.+..+.+.. +...|...+....+.|.+++|++.+.++...
T Consensus       544 rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-~w~iWENymlvsvdvge~eda~~A~~rll~~  616 (777)
T KOG1128|consen  544 RCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-HWQIWENYMLVSVDVGEFEDAIKAYHRLLDL  616 (777)
T ss_pred             HHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-CCeeeechhhhhhhcccHHHHHHHHHHHHHh
Confidence            88776  444 578999999999999999999999999988743 6667878888889999999999999988654

>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]

Probab=98.65  E-value=0.00043  Score=65.07  Aligned_cols=60  Identities=18%  Similarity=0.129  Sum_probs=41.2

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +-.++..|-+.|+++.|..+++...++  .|+ +..|..=.+.+...|++++|..++++..+.
T Consensus       374 ~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l~ea~el  434 (700)
T KOG1156|consen  374 LYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWLDEAQEL  434 (700)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhc
Confidence            344566777788888888888877765  233 334444457777888888888888877664

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.64  E-value=0.00045  Score=66.19  Aligned_cols=323  Identities=14%  Similarity=0.056  Sum_probs=181.6

Q ss_pred             CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH-hhHH
Q 045814          101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI-KTWN  177 (427)
Q Consensus       101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~-~~~~  177 (427)
                      .+.-|...|-.+.-++...|+++.+.+.|++.  +.--....|+.+-..|...|.-..|..+.++-......|+. ..+-
T Consensus       318 ~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~L  397 (799)
T KOG4162|consen  318 KFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLL  397 (799)
T ss_pred             hhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHH
Confidence            45667888888888888888888888888872  22234567778888888888877788777766544322332 2222


Q ss_pred             HHHHHHH-HcCChhHHHHHHHHHHhc--------------------------------------------------c---
Q 045814          178 SALLGCI-KIDRTDLVWKLYHDLIES--------------------------------------------------G---  203 (427)
Q Consensus       178 ~ll~~~~-~~~~~~~a~~~~~~~~~~--------------------------------------------------~---  203 (427)
                      ..-..|. +.+.+++++.+-.++++.                                                  +   
T Consensus       398 masklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~d  477 (799)
T KOG4162|consen  398 MASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTD  477 (799)
T ss_pred             HHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCC
Confidence            2222332 345555555555555542                                                  0   


Q ss_pred             -----hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-CCC-----------
Q 045814          204 -----YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRA-----------  266 (427)
Q Consensus       204 -----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~-----------  266 (427)
                           .+.--|+..++++.|.+..++..+.+..-+...|..|.-.+...+++.+|+.+.+...+. |..           
T Consensus       478 p~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~  557 (799)
T KOG4162|consen  478 PLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIE  557 (799)
T ss_pred             chHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhh
Confidence                 033335556667777777777776655556677777777777777777777776654432 110           


Q ss_pred             -------CCHhhHHHHHHHHHh-----------------------cCChHHHHHHHHHHH--------hCC---------
Q 045814          267 -------PDNFTYEEVINGLCK-----------------------SRKRLEAYRVFNDLK--------ERG---------  299 (427)
Q Consensus       267 -------~~~~~~~~ll~~~~~-----------------------~~~~~~a~~~~~~m~--------~~~---------  299 (427)
                             .-..|...++...-.                       .++..+|......+.        ..|         
T Consensus       558 ~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~  637 (799)
T KOG4162|consen  558 LTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSST  637 (799)
T ss_pred             hhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccc
Confidence                   001111111111110                       001111111111100        000         


Q ss_pred             CC--CC------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 045814          300 YV--PD------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG  371 (427)
Q Consensus       300 ~~--p~------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  371 (427)
                      ..  |+      ...|......+.+.+..++|...+.+..... .-....|......+...|.+.+|.+.|......+..
T Consensus       638 ~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~  716 (799)
T KOG4162|consen  638 VLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD  716 (799)
T ss_pred             ccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC
Confidence            00  11      1122333444555566666665555554432 223344555555666677777887777777654321


Q ss_pred             CChhhHHHHHHHHHhcCCHHHHHH--HHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          372 ETTVTYNTLIAGLCLHGRTDEAYH--LFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       372 p~~~~~~~li~~~~~~g~~~~A~~--~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                       ++.+..++...+.+.|+..-|..  ++.++.+.+.. +...|..+-..+-+.|+.+
T Consensus       717 -hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~  771 (799)
T KOG4162|consen  717 -HVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSK  771 (799)
T ss_pred             -CcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchH
Confidence             45677777888888887776666  78888776544 6778888888888877754

>KOG1125 consensus TPR repeat-containing protein [General function prediction only]

Probab=98.63  E-value=1.2e-05  Score=74.19  Aligned_cols=239  Identities=11%  Similarity=0.115  Sum_probs=179.5

Q ss_pred             HHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHH
Q 045814          116 LVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW  193 (427)
Q Consensus       116 ~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  193 (427)
                      +.+.|++.+|.-.|+. ....| +...|-.|......+++-..|+..+.+..+.... +....-.|.-.|...|.-..|.
T Consensus       295 lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~-NleaLmaLAVSytNeg~q~~Al  373 (579)
T KOG1125|consen  295 LMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELDPT-NLEALMALAVSYTNEGLQNQAL  373 (579)
T ss_pred             HHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCc-cHHHHHHHHHHHhhhhhHHHHH
Confidence            4578889999888886 33344 5789999999999999999999999999987555 6778888888999999999999


Q ss_pred             HHHHHHHhcch---hH------------HHHHhcCChhHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814          194 KLYHDLIESGY---LI------------QAFCNDGKVSEGYELLRQVL-EDGLVPENTAFNKLISRFCEKKNFGRVSELL  257 (427)
Q Consensus       194 ~~~~~~~~~~~---l~------------~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  257 (427)
                      +.++.-+....   .+            ..+..........++|-++. ..+..+|..++..|.-.|.-.|++++|.+.|
T Consensus       374 ~~L~~Wi~~~p~y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf  453 (579)
T KOG1125|consen  374 KMLDKWIRNKPKYVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCF  453 (579)
T ss_pred             HHHHHHHHhCccchhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHH
Confidence            99998876532   11            12222333455666666665 4555578888889988999999999999999


Q ss_pred             HHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHc---
Q 045814          258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHK---  333 (427)
Q Consensus       258 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---  333 (427)
                      +..+...+ -|...||.|...++...+.++|+..|++.++.  .|+ +.+...|.-+|...|.+++|...|-..+..   
T Consensus       454 ~~AL~v~P-nd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~mq~k  530 (579)
T KOG1125|consen  454 EAALQVKP-NDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVKHLLEALSMQRK  530 (579)
T ss_pred             HHHHhcCC-chHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHHhhhc
Confidence            99988743 36789999999999999999999999999887  454 334455777789999999999988765432   


Q ss_pred             C------CCCCHHHHHHHHHHHhhcCCHHHH
Q 045814          334 G------LLPNEYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       334 ~------~~p~~~~~~~li~~~~~~g~~~~a  358 (427)
                      +      ..++...|..|=.++.-.++.|.+
T Consensus       531 s~~~~~~~~~se~iw~tLR~als~~~~~D~l  561 (579)
T KOG1125|consen  531 SRNHNKAPMASENIWQTLRLALSAMNRSDLL  561 (579)
T ss_pred             ccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence            1      112334555554455555555433

>PLN02789 farnesyltranstransferase

Probab=98.62  E-value=6.6e-05  Score=67.22  Aligned_cols=215  Identities=10%  Similarity=0.076  Sum_probs=114.6

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH-HhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP-NSLELYIQCLCESG-LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI  184 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~-~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  184 (427)
                      ++..+-..+...++.++|+.+..+ ....|+. .+|+.-..++...| .+++++..++++.+...+ +..+|+.-...+.
T Consensus        39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~  117 (320)
T PLN02789         39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAE  117 (320)
T ss_pred             HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHH
Confidence            444444455556677777777665 3334433 34555555555555 466777777777665444 4445543332222


Q ss_pred             HcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814          185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN  264 (427)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  264 (427)
                      +.|..                        ..++++.+++++.+.... +..+|+....++...|+++++++.++++++.+
T Consensus       118 ~l~~~------------------------~~~~el~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d  172 (320)
T PLN02789        118 KLGPD------------------------AANKELEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED  172 (320)
T ss_pred             HcCch------------------------hhHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence            22210                        113445555566555443 66667766666667777777777777777765


Q ss_pred             CCCCHhhHHHHHHHHHhc---CCh----HHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----CCHHHHHHHHHHHHHc
Q 045814          265 RAPDNFTYEEVINGLCKS---RKR----LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----GWLGDARKMWFEMIHK  333 (427)
Q Consensus       265 ~~~~~~~~~~ll~~~~~~---~~~----~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----g~~~~a~~~~~~m~~~  333 (427)
                      +. |...|+.....+.+.   |..    ++......++...... |...|+-+...+...    ++..+|...+.+....
T Consensus       173 ~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~-N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~  250 (320)
T PLN02789        173 VR-NNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPR-NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSK  250 (320)
T ss_pred             CC-chhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCC-CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcc
Confidence            43 445555544444333   222    3445555555554333 555666666666552    2334566666665543


Q ss_pred             CCCCCHHHHHHHHHHHhh
Q 045814          334 GLLPNEYTYNSMIHGYCR  351 (427)
Q Consensus       334 ~~~p~~~~~~~li~~~~~  351 (427)
                      ++ .+......|+..|+.
T Consensus       251 ~~-~s~~al~~l~d~~~~  267 (320)
T PLN02789        251 DS-NHVFALSDLLDLLCE  267 (320)
T ss_pred             cC-CcHHHHHHHHHHHHh
Confidence            32 244555556666554

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.61  E-value=0.00014  Score=71.45  Aligned_cols=277  Identities=13%  Similarity=0.102  Sum_probs=182.1

Q ss_pred             CCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHH
Q 045814          104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN-----SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNS  178 (427)
Q Consensus       104 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~  178 (427)
                      .|+...+..+.++...+-+.+.++++++.-..|++.     .-|.||-...+. +.....+..+++......       .
T Consensus       982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyDa~-------~ 1053 (1666)
T KOG0985|consen  982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYDAP-------D 1053 (1666)
T ss_pred             CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCCch-------h
Confidence            456666666777778888888888888754444433     334444444333 345566666666543211       2


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcchhHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814          179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCN-DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL  257 (427)
Q Consensus       179 ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  257 (427)
                      +...+...+-+++|..+|+..-..+..+..+.. -+..+.|.+.-++..      .+..|+.+..+-.+.|...+|++-|
T Consensus      1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred             HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence            334455666777888888776665555554443 456666666554432      3457888888888888888887766


Q ss_pred             HHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814          258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP  337 (427)
Q Consensus       258 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  337 (427)
                      -+.      -|...|..+++...+.|.+++-.+.+....+..-+|...  +.+|-+|++.+++.+.++++       .-|
T Consensus      1128 ika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gp 1192 (1666)
T KOG0985|consen 1128 IKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGP 1192 (1666)
T ss_pred             Hhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCC
Confidence            432      256678888888888888888888888777776555544  56888888888887766554       236


Q ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045814          338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ  417 (427)
Q Consensus       338 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  417 (427)
                      |..-...+.+-|...|.++.|.-+|..         +..|..|...+...|+++.|..--++.-      +..||..+-.
T Consensus      1193 N~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~aRKAn------s~ktWK~Vcf 1257 (1666)
T KOG0985|consen 1193 NVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAARKAN------STKTWKEVCF 1257 (1666)
T ss_pred             CchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHhhhcc------chhHHHHHHH
Confidence            666677777777777888777766653         3446777777777788777776554433      4567777766


Q ss_pred             HHHhcCC
Q 045814          418 GYCKEGK  424 (427)
Q Consensus       418 ~~~~~g~  424 (427)
                      +|...+.
T Consensus      1258 aCvd~~E 1264 (1666)
T KOG0985|consen 1258 ACVDKEE 1264 (1666)
T ss_pred             HHhchhh
Confidence            6665543

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.61  E-value=0.00031  Score=61.25  Aligned_cols=315  Identities=10%  Similarity=0.020  Sum_probs=167.6

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChh
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE  155 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  155 (427)
                      +....-+.++++.|+..+..+...  -.++...+-.|.-...-.|.+.+|..+..+.+  .++-.-..|+..-.+.++-+
T Consensus        63 ia~C~fhLgdY~~Al~~Y~~~~~~--~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~--k~pL~~RLlfhlahklndEk  138 (557)
T KOG3785|consen   63 IAHCYFHLGDYEEALNVYTFLMNK--DDAPAELGVNLACCKFYLGQYIEAKSIAEKAP--KTPLCIRLLFHLAHKLNDEK  138 (557)
T ss_pred             HHHHHHhhccHHHHHHHHHHHhcc--CCCCcccchhHHHHHHHHHHHHHHHHHHhhCC--CChHHHHHHHHHHHHhCcHH
Confidence            333444678999999999988653  35666666666666667788999988887753  23444455556666667766


Q ss_pred             HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHHHHHHHH
Q 045814          156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      +-..+.+.+...     ..---+|........++.+|.++|+.+...+.        +.-.|.+..-++-+.++++-..+
T Consensus       139 ~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~  213 (557)
T KOG3785|consen  139 RILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLR  213 (557)
T ss_pred             HHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHH
Confidence            666665555432     22233344444445567888888888777642        45566677777777777776665


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH--------------hhCCC------------CCC-----HhhHHHHH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTM--------------VARNR------------APD-----NFTYEEVI  276 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m--------------~~~~~------------~~~-----~~~~~~ll  276 (427)
                      .-.. ++...|.......+.-.-..|++-.+.+              .+++.            -|.     ...--.++
T Consensus       214 q~pd-StiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~  292 (557)
T KOG3785|consen  214 QFPD-STIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLI  292 (557)
T ss_pred             hCCC-cHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhhe
Confidence            4222 3344444433333321111111111111              11110            000     01111233


Q ss_pred             HHHHhcCChHHHHHHHHHHHhC--------------------------------------CCCCChh-hHHHHHHHHHcc
Q 045814          277 NGLCKSRKRLEAYRVFNDLKER--------------------------------------GYVPDTV-MYTTVIHGLCKM  317 (427)
Q Consensus       277 ~~~~~~~~~~~a~~~~~~m~~~--------------------------------------~~~p~~~-~~~~li~~~~~~  317 (427)
                      -.|.+.++..+|..+..++.-.                                      +..-|+. -=.++.+++.-.
T Consensus       293 iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~  372 (557)
T KOG3785|consen  293 IYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLS  372 (557)
T ss_pred             eeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHH
Confidence            3456677777776666554311                                      1111100 011122222222


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-HHHHHhcCCHHHHHHH
Q 045814          318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL-IAGLCLHGRTDEAYHL  396 (427)
Q Consensus       318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-i~~~~~~g~~~~A~~~  396 (427)
                      -++++.+.+++.+...=..-|...| .+.++++..|++.+|+++|-.+....++ |..+|.++ .++|.+.++++-|+++
T Consensus       373 ~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~  450 (557)
T KOG3785|consen  373 FQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDM  450 (557)
T ss_pred             HHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHH
Confidence            2333333333333333222222222 3456677778888888888777655444 55555544 4677888888888777


Q ss_pred             HHHHHH
Q 045814          397 FEEMAQ  402 (427)
Q Consensus       397 ~~~m~~  402 (427)
                      +-++..
T Consensus       451 ~lk~~t  456 (557)
T KOG3785|consen  451 MLKTNT  456 (557)
T ss_pred             HHhcCC
Confidence            665543

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.61  E-value=3.4e-05  Score=78.07  Aligned_cols=232  Identities=12%  Similarity=0.062  Sum_probs=139.9

Q ss_pred             CCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCc---CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHH
Q 045814          135 SPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEM-GVFG---SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF  209 (427)
Q Consensus       135 ~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p---~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~  209 (427)
                      .|| ...|-..|....+.++.++|.+++++.... ++.-   -...|.++++.-..-|.-+...++|+++.+..      
T Consensus      1454 sPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc------ 1527 (1710)
T KOG1070|consen 1454 SPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC------ 1527 (1710)
T ss_pred             CCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc------
Confidence            344 345777777777788888888888777643 1111   12345555555555555555555555444321      


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY  289 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  289 (427)
                                           . .-..|..|...|.+.++.++|.++++.|.+.- ......|...+..+.+..+-+.|.
T Consensus      1528 ---------------------d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~ 1584 (1710)
T KOG1070|consen 1528 ---------------------D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAAR 1584 (1710)
T ss_pred             ---------------------c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHH
Confidence                                 1 22356667777777777777777777777652 245567777777777777777777


Q ss_pred             HHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          290 RVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       290 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .++.+..+.-.+- -.....-.++.-.+.|+.+.+..+|+.....-.+ -...|+.+++.-.++|+.+.++.+|++....
T Consensus      1585 ~lL~rAL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l 1663 (1710)
T KOG1070|consen 1585 ELLKRALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIEL 1663 (1710)
T ss_pred             HHHHHHHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            7777766542211 1223334445555677777777777777665322 3456777777777777777777777777776


Q ss_pred             CCCCC--hhhHHHHHHHHHhcCCHHHHHHH
Q 045814          369 GYGET--TVTYNTLIAGLCLHGRTDEAYHL  396 (427)
Q Consensus       369 ~~~p~--~~~~~~li~~~~~~g~~~~A~~~  396 (427)
                      ++.|-  ...|...+..--..|+-..+..+
T Consensus      1664 ~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1664 KLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred             CCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence            66554  24566666655566665544433

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.61  E-value=0.00022  Score=74.53  Aligned_cols=294  Identities=10%  Similarity=-0.059  Sum_probs=188.2

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhc----CC-----CCC--HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH----h
Q 045814          110 NVLFDSLVEARAFKVAMDFLDST----GF-----SPN--PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI----K  174 (427)
Q Consensus       110 ~~ll~~~~~~~~~~~a~~~~~~~----~~-----~~~--~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~  174 (427)
                      ......+...|+++++..++...    ..     .+.  ......+...+...|++++|...++.....-...+.    .
T Consensus       413 ~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  492 (903)
T PRK04841        413 LLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGDPEEAERLAELALAELPLTWYYSRIV  492 (903)
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccHHHHHH
Confidence            33444556778888888877642    11     111  112233345566789999999999887653111121    3


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhc--------------chhHHHHHhcCChhHHHHHHHHHHHC----CCC--C-C
Q 045814          175 TWNSALLGCIKIDRTDLVWKLYHDLIES--------------GYLIQAFCNDGKVSEGYELLRQVLED----GLV--P-E  233 (427)
Q Consensus       175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~--------------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~  233 (427)
                      ..+.+...+...|++++|...+++....              ..+...+...|++++|...+++....    +..  + .
T Consensus       493 a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~  572 (903)
T PRK04841        493 ATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMH  572 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHH
Confidence            4455666778899999999998887643              12456677899999999988876542    211  1 2


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCC--CCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CChhhH-
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARN--RAP--DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PDTVMY-  307 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~-  307 (427)
                      ...+..+...+...|++++|...+.+.....  ..+  ....+..+...+...|++++|.+.+......... .....+ 
T Consensus       573 ~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~  652 (903)
T PRK04841        573 EFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWI  652 (903)
T ss_pred             HHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHh
Confidence            2334455566777899999999888765531  111  2334455666778899999999998887542111 011111 


Q ss_pred             ----HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hh
Q 045814          308 ----TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET-TV  375 (427)
Q Consensus       308 ----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~  375 (427)
                          ...+..+...|+.+.|...+............   ..+..+..++...|+.++|...+++....    |..++ ..
T Consensus       653 ~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~  732 (903)
T PRK04841        653 ANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNR  732 (903)
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHH
Confidence                11224445678899999887775543211111   11345667788899999999999987653    32222 34


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +...+..++.+.|+.++|...+.+..+.
T Consensus       733 ~~~~la~a~~~~G~~~~A~~~L~~Al~l  760 (903)
T PRK04841        733 NLILLNQLYWQQGRKSEAQRVLLEALKL  760 (903)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            5666777888999999999999988775

>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]

Probab=98.60  E-value=3.8e-05  Score=77.71  Aligned_cols=225  Identities=12%  Similarity=0.065  Sum_probs=168.3

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814          172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG  251 (427)
Q Consensus       172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  251 (427)
                      +...|-..|......++.+.|.++.++++..          =++.+-.+            -...|.++++.-..-|.-+
T Consensus      1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~t----------IN~REeeE------------KLNiWiA~lNlEn~yG~ee 1514 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKT----------INFREEEE------------KLNIWIAYLNLENAYGTEE 1514 (1710)
T ss_pred             cchHHHHHHHHHhhhhhhHHHHHHHHHHhhh----------CCcchhHH------------HHHHHHHHHhHHHhhCcHH
Confidence            4556767777777777777777766655421          00000000            1235777777777778888


Q ss_pred             HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       252 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      ...++|+++.+.. . ....|..|...|.+.++.++|.++++.|.+.-- -....|...+..+.+.++-+.|..++.++.
T Consensus      1515 sl~kVFeRAcqyc-d-~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF~-q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL 1591 (1710)
T KOG1070|consen 1515 SLKKVFERACQYC-D-AYTVHLKLLGIYEKSEKNDEADELLRLMLKKFG-QTRKVWIMYADFLLRQNEAEAARELLKRAL 1591 (1710)
T ss_pred             HHHHHHHHHHHhc-c-hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhc-chhhHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            9999999998763 2 246789999999999999999999999977622 366789999999999999999999999998


Q ss_pred             HcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814          332 HKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD  408 (427)
Q Consensus       332 ~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  408 (427)
                      +.  .|.   .....-.+..-.+.|+.+.++.+|+...... +--...|+.+|+.-.++|+.+.+..+|++....++.|-
T Consensus      1592 ~~--lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1592 KS--LPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred             hh--cchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence            76  343   2334445555668899999999999998763 33578899999999999999999999999999988775


Q ss_pred             H--hHHHHHHHHHHhcCC
Q 045814          409 V--ITYNTLIQGYCKEGK  424 (427)
Q Consensus       409 ~--~~~~~li~~~~~~g~  424 (427)
                      .  ..|...++-=.++|+
T Consensus      1669 kmKfffKkwLeyEk~~Gd 1686 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGD 1686 (1710)
T ss_pred             HhHHHHHHHHHHHHhcCc
Confidence            3  466666665555554

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.56  E-value=1.6e-05  Score=68.68  Aligned_cols=60  Identities=12%  Similarity=0.031  Sum_probs=48.8

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEMLDKGY--GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .+...|.+.|++++|...++...+...  +.....+..+..++...|++++|.++++.+...
T Consensus       171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            345668889999999999999987621  223578889999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.56  E-value=2.3e-05  Score=65.26  Aligned_cols=119  Identities=8%  Similarity=0.046  Sum_probs=66.3

Q ss_pred             cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HhhcCC--HHHH
Q 045814          282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG-YCRIDN--LEEA  358 (427)
Q Consensus       282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~--~~~a  358 (427)
                      .++.+++...++...+.+.. |...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+  .++|
T Consensus        52 ~~~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A  129 (198)
T PRK10370         52 QQTPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQT  129 (198)
T ss_pred             chhHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHH
Confidence            44445555555555544332 5556666666666666666666666666655321 44445554444 244444  3666


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       359 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .+++++..+.+.. +...+..+...+...|++++|...|+++.+.
T Consensus       130 ~~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        130 REMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            6666666655322 4555566666666666666666666666554

>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional

Probab=98.56  E-value=1.9e-05  Score=65.68  Aligned_cols=117  Identities=4%  Similarity=0.053  Sum_probs=57.9

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCC--hHHHHH
Q 045814          214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-LCKSRK--RLEAYR  290 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~--~~~a~~  290 (427)
                      +.+++...++........ +...|..+...|...|++++|...|++..+.... +...+..+..+ +...|+  .++|.+
T Consensus        54 ~~~~~i~~l~~~L~~~P~-~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~P~-~~~~~~~lA~aL~~~~g~~~~~~A~~  131 (198)
T PRK10370         54 TPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWRNDYDNALLAYRQALQLRGE-NAELYAALATVLYYQAGQHMTPQTRE  131 (198)
T ss_pred             hHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCCCcHHHHH
Confidence            334444444444443332 4555555555555555555555555555554322 33444444443 234444  355555


Q ss_pred             HHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          291 VFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       291 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ++++..+.+.. +..++..+...+.+.|++++|...|+++.+.
T Consensus       132 ~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l  173 (198)
T PRK10370        132 MIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDL  173 (198)
T ss_pred             HHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            55555554433 4445555555555555555555555555544

>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.55  E-value=0.00068  Score=63.09  Aligned_cols=331  Identities=12%  Similarity=0.098  Sum_probs=186.6

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChhHHHHH
Q 045814           82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGF-SPNPNSLELYIQCLCESGLIEEAFCA  160 (427)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~  160 (427)
                      ..++++.|++....+...  .+-|...+..=+-++.+.+++++|+.+.+..+. ..+..-+--=..+.-+.+..++|+..
T Consensus        24 ~~~e~e~a~k~~~Kil~~--~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~  101 (652)
T KOG2376|consen   24 KNGEYEEAVKTANKILSI--VPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKT  101 (652)
T ss_pred             cchHHHHHHHHHHHHHhc--CCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHH
Confidence            456788899999888653  355677788888889999999999988877442 22211111123444578999999999


Q ss_pred             HHHHHhcCCCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-hHHHHHhcCChhHHHHHH-HHHHHCCCCCCHHHH
Q 045814          161 FSKLKEMGVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-LIQAFCNDGKVSEGYELL-RQVLEDGLVPENTAF  237 (427)
Q Consensus       161 ~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-l~~~~~~~g~~~~a~~~~-~~~~~~~~~~~~~~~  237 (427)
                      ++     |..+ |..+...-...+.+.+++++|..+|+.+.+.+. -.+.-.+.+-...+-..- ..+......| ..+|
T Consensus       102 ~~-----~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~-e~sy  175 (652)
T KOG2376|consen  102 LK-----GLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP-EDSY  175 (652)
T ss_pred             Hh-----cccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC-cchH
Confidence            98     3333 334666666778899999999999999987753 111111111111110000 0122222333 2344


Q ss_pred             HHHH---HHHHccCChhHHHHHHHHHhhCC--------C-----CCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          238 NKLI---SRFCEKKNFGRVSELLHTMVARN--------R-----APDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       238 ~~li---~~~~~~~~~~~a~~~~~~m~~~~--------~-----~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                      ..+.   ..+...|++.+|+++++.....+        .     .-+.. .--.+.-++-..|+..+|..++....+...
T Consensus       176 el~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~  255 (652)
T KOG2376|consen  176 ELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP  255 (652)
T ss_pred             HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC
Confidence            4443   34556899999999998873211        0     00111 112334456678999999999999887754


Q ss_pred             CCChhh----HHHHHHHHHccCCHH-------------HHHHHHHHH----------------------------HH--c
Q 045814          301 VPDTVM----YTTVIHGLCKMGWLG-------------DARKMWFEM----------------------------IH--K  333 (427)
Q Consensus       301 ~p~~~~----~~~li~~~~~~g~~~-------------~a~~~~~~m----------------------------~~--~  333 (427)
                      . |...    -|.++..-....-++             -+......+                            ..  .
T Consensus       256 ~-D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~a~lp  334 (652)
T KOG2376|consen  256 A-DEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELSASLP  334 (652)
T ss_pred             C-CchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhCC
Confidence            3 3321    122221111000000             000000000                            00  0


Q ss_pred             CCCCCHHHHHHHHHHHhh--cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH--------HHHHC
Q 045814          334 GLLPNEYTYNSMIHGYCR--IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE--------EMAQK  403 (427)
Q Consensus       334 ~~~p~~~~~~~li~~~~~--~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~--------~m~~~  403 (427)
                      +..|. ..+.+++..+.+  .....++.+++....+....-...+.-.++......|+++.|.+++.        .+.+.
T Consensus       335 ~~~p~-~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~  413 (652)
T KOG2376|consen  335 GMSPE-SLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEA  413 (652)
T ss_pred             ccCch-HHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhh
Confidence            12222 233444443322  22467777777777665332234566667778889999999999999        66665


Q ss_pred             CCCCCHhHHHHHHHHHHhcCC
Q 045814          404 GIFRDVITYNTLIQGYCKEGK  424 (427)
Q Consensus       404 g~~p~~~~~~~li~~~~~~g~  424 (427)
                      +..|  .+..+++..+.+.++
T Consensus       414 ~~~P--~~V~aiv~l~~~~~~  432 (652)
T KOG2376|consen  414 KHLP--GTVGAIVALYYKIKD  432 (652)
T ss_pred             ccCh--hHHHHHHHHHHhccC
Confidence            5555  445556665655554

>KOG3785 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.54  E-value=0.00014  Score=63.33  Aligned_cols=290  Identities=12%  Similarity=0.092  Sum_probs=166.2

Q ss_pred             HHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHH-HHHHhcCChhHHHHHHHHHHhcCCCcC-HhhHHHHHHHHHH--c
Q 045814          112 LFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYI-QCLCESGLIEEAFCAFSKLKEMGVFGS-IKTWNSALLGCIK--I  186 (427)
Q Consensus       112 ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li-~~~~~~~~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~--~  186 (427)
                      |.+...-.-.+.+|++++++ ..-.|+-...|.-+ -+|.+.+-++-+.+++..-.+.  .|| ....|......-+  .
T Consensus       157 LAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~n  234 (557)
T KOG3785|consen  157 LASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLIN  234 (557)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhc
Confidence            33333333457888888887 33355555555543 4667777788888887766654  233 3333332222222  1


Q ss_pred             CChhH--HHHH----------HHHHHhcc--------------------------hhHHHHHhcCChhHHHHHHHHHHHC
Q 045814          187 DRTDL--VWKL----------YHDLIESG--------------------------YLIQAFCNDGKVSEGYELLRQVLED  228 (427)
Q Consensus       187 ~~~~~--a~~~----------~~~~~~~~--------------------------~l~~~~~~~g~~~~a~~~~~~~~~~  228 (427)
                      |+..+  -.++          .+.+.+.+                          -++-.|.+.+++++|..+.+++.. 
T Consensus       235 gr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P-  313 (557)
T KOG3785|consen  235 GRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP-  313 (557)
T ss_pred             cchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC-
Confidence            11111  1111          11222221                          155567888999999888766532 


Q ss_pred             CCCCCHHHHHHHH-----HHHHccCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 045814          229 GLVPENTAFNKLI-----SRFCEKKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVP  302 (427)
Q Consensus       229 ~~~~~~~~~~~li-----~~~~~~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p  302 (427)
                       ..|-......+.     .-........-|.+.|+-.-+++.+.|.. .-.++...+.-..++++++-.++.+..--..-
T Consensus       314 -ttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~Nd  392 (557)
T KOG3785|consen  314 -TTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTND  392 (557)
T ss_pred             -CChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Confidence             122222222222     11122223556777776666665544432 33455555666677888888888877654444


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH-
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS-MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL-  380 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~-li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l-  380 (427)
                      |...|| +.++++..|.+.+|+++|-.+....++ |..+|-. +.++|.+.+.++.|++++-.+..   +.+..+.-.+ 
T Consensus       393 D~Fn~N-~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlI  467 (557)
T KOG3785|consen  393 DDFNLN-LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLI  467 (557)
T ss_pred             chhhhH-HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHH
Confidence            555555 678888889999999988777655555 5556654 45688888888888877655533   2233333333 


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY  412 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  412 (427)
                      ..-|.+.+.+--|-+.|+.+...  .|++..|
T Consensus       468 An~CYk~~eFyyaaKAFd~lE~l--DP~pEnW  497 (557)
T KOG3785|consen  468 ANDCYKANEFYYAAKAFDELEIL--DPTPENW  497 (557)
T ss_pred             HHHHHHHHHHHHHHHhhhHHHcc--CCCcccc
Confidence            45677888888888888877764  3444433

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.53  E-value=6.1e-05  Score=74.34  Aligned_cols=133  Identities=9%  Similarity=-0.014  Sum_probs=85.8

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      +...+-.|.....+.|.+++|..+++...+..+. +......+...+.+.+++++|...+++....... +......+..
T Consensus        85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~a~  162 (694)
T PRK15179         85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLEAK  162 (694)
T ss_pred             cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHHHH
Confidence            5666666667777777777777777776665321 3445566666667777777777777777666443 4555666666


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ++.+.|++++|..+|+++...+ .-+..++..+..++-..|+.++|...|+...+.
T Consensus       163 ~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        163 SWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            6667777777777777776632 223556666666667777777777777766654

>PLN02789 farnesyltranstransferase

Probab=98.53  E-value=8.1e-05  Score=66.64  Aligned_cols=120  Identities=8%  Similarity=0.000  Sum_probs=50.8

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh--HHH
Q 045814          212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK-NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR--LEA  288 (427)
Q Consensus       212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~--~~a  288 (427)
                      .+..++|+.+..+++..... +..+|+.--.++...| +++++++.++++.+...+ +..+|+...-.+.+.|+.  +++
T Consensus        50 ~e~serAL~lt~~aI~lnP~-~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npk-nyqaW~~R~~~l~~l~~~~~~~e  127 (320)
T PLN02789         50 DERSPRALDLTADVIRLNPG-NYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPK-NYQIWHHRRWLAEKLGPDAANKE  127 (320)
T ss_pred             CCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCc-chHHhHHHHHHHHHcCchhhHHH
Confidence            33444455554444443222 2223333333333333 344555555555444322 222333332223333331  344


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814          289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG  334 (427)
Q Consensus       289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  334 (427)
                      ..+++++.+...+ |..+|+...-++...|+++++++.++++++.+
T Consensus       128 l~~~~kal~~dpk-Ny~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d  172 (320)
T PLN02789        128 LEFTRKILSLDAK-NYHAWSHRQWVLRTLGGWEDELEYCHQLLEED  172 (320)
T ss_pred             HHHHHHHHHhCcc-cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHC
Confidence            4444444444333 44445544444445555555555555555543

>PRK04841 transcriptional regulator MalT; Provisional

Probab=98.51  E-value=0.00045  Score=72.31  Aligned_cols=310  Identities=12%  Similarity=0.048  Sum_probs=189.0

Q ss_pred             HHcCChHHHHHHHHhcCC---CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC------CcC--HhhHHHHHHHHHH
Q 045814          117 VEARAFKVAMDFLDSTGF---SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV------FGS--IKTWNSALLGCIK  185 (427)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~------~p~--~~~~~~ll~~~~~  185 (427)
                      ...|+++.+..+++..+.   ..++.........+...|++++|...+......--      .+.  ......+...+..
T Consensus       385 ~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~  464 (903)
T PRK04841        385 FNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIN  464 (903)
T ss_pred             HhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHh
Confidence            345666666666655421   11222223344455677899999988887654311      111  1122233345667


Q ss_pred             cCChhHHHHHHHHHHhc-------------chhHHHHHhcCChhHHHHHHHHHHHC----CCC-CCHHHHHHHHHHHHcc
Q 045814          186 IDRTDLVWKLYHDLIES-------------GYLIQAFCNDGKVSEGYELLRQVLED----GLV-PENTAFNKLISRFCEK  247 (427)
Q Consensus       186 ~~~~~~a~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~-~~~~~~~~li~~~~~~  247 (427)
                      .|++++|...+++....             +.+...+...|++++|...+++....    |.. ....++..+...+...
T Consensus       465 ~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~  544 (903)
T PRK04841        465 DGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQ  544 (903)
T ss_pred             CCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHC
Confidence            89999999998887652             12445567789999999998887642    111 1123455566778889


Q ss_pred             CChhHHHHHHHHHhhC----CCC--C-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCC--ChhhHHHHHHHHHc
Q 045814          248 KNFGRVSELLHTMVAR----NRA--P-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--YVP--DTVMYTTVIHGLCK  316 (427)
Q Consensus       248 ~~~~~a~~~~~~m~~~----~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p--~~~~~~~li~~~~~  316 (427)
                      |++++|...+++....    +..  + ....+..+...+...|++++|...+.+.....  ..+  ....+..+...+..
T Consensus       545 G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~  624 (903)
T PRK04841        545 GFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLA  624 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHH
Confidence            9999999988876542    211  1 12334455566777899999999988875431  111  23345556667778


Q ss_pred             cCCHHHHHHHHHHHHHcCCCC-CHHHH-----HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhc
Q 045814          317 MGWLGDARKMWFEMIHKGLLP-NEYTY-----NSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAGLCLH  387 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~~~~~p-~~~~~-----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~  387 (427)
                      .|+.++|...++......... ....+     ...+..+...|+.+.|.+.+...........   ...+..+..++...
T Consensus       625 ~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~  704 (903)
T PRK04841        625 RGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILL  704 (903)
T ss_pred             cCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHc
Confidence            899999999988875431110 11111     1122445567899999998877654221111   11234567778899


Q ss_pred             CCHHHHHHHHHHHHHC----CCCCC-HhHHHHHHHHHHhcCCCC
Q 045814          388 GRTDEAYHLFEEMAQK----GIFRD-VITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       388 g~~~~A~~~~~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~  426 (427)
                      |++++|..++++....    |..++ ..+...+-.++.+.|+.+
T Consensus       705 g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~  748 (903)
T PRK04841        705 GQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKS  748 (903)
T ss_pred             CCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHH
Confidence            9999999999987653    33332 245666677777877753

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.49  E-value=9.7e-05  Score=73.85  Aligned_cols=267  Identities=11%  Similarity=0.075  Sum_probs=126.2

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHH-hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPN-SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG  182 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~-~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  182 (427)
                      +...+-.|+..+...+++++|.++.+. ....|+.. .|-.+...+.+.++..++..+  .+..  ..+...-|...-..
T Consensus        30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~~l~--~~~~~~~~~~ve~~  105 (906)
T PRK14720         30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--NLID--SFSQNLKWAIVEHI  105 (906)
T ss_pred             hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--hhhh--hcccccchhHHHHH
Confidence            345666666666666666666666654 23334322 233333355555555555444  2221  11122222222222


Q ss_pred             HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814          183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA  262 (427)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  262 (427)
                      |...+++..-..      ..-.+..+|-+.|+.++|..+++++.+.... |+.+.|.+...|+.. ++++|.+++.+...
T Consensus       106 ~~~i~~~~~~k~------Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~  177 (906)
T PRK14720        106 CDKILLYGENKL------ALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIY  177 (906)
T ss_pred             HHHHHhhhhhhH------HHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHH
Confidence            222221111100      0012444455555555555555555554422 455555555555555 55555555554433


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCCHHH
Q 045814          263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPNEYT  341 (427)
Q Consensus       263 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~  341 (427)
                      .               |...+++..+..+|.++.....                 .+.+.-..+.+.+... |..--..+
T Consensus       178 ~---------------~i~~kq~~~~~e~W~k~~~~~~-----------------~d~d~f~~i~~ki~~~~~~~~~~~~  225 (906)
T PRK14720        178 R---------------FIKKKQYVGIEEIWSKLVHYNS-----------------DDFDFFLRIERKVLGHREFTRLVGL  225 (906)
T ss_pred             H---------------HHhhhcchHHHHHHHHHHhcCc-----------------ccchHHHHHHHHHHhhhccchhHHH
Confidence            3               3334455555555555544321                 1222223333333322 22223345


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-HHCCCCCCHhHHHHHHHHH
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM-AQKGIFRDVITYNTLIQGY  419 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m-~~~g~~p~~~~~~~li~~~  419 (427)
                      +-.+-..|-..++++++.++++.+.+..-. |.....-++.+|.  +.+.. ...|++. ...|+.-+...+..-|.-|
T Consensus       226 ~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~--~kY~~-~~~~ee~l~~s~l~~~~~~~~~~i~~f  300 (906)
T PRK14720        226 LEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK--EKYKD-HSLLEDYLKMSDIGNNRKPVKDCIADF  300 (906)
T ss_pred             HHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH--HHccC-cchHHHHHHHhccccCCccHHHHHHHH
Confidence            556667788888899999999998887433 5566667777766  33333 3334333 2335554434444334333

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=0.0011  Score=61.19  Aligned_cols=330  Identities=15%  Similarity=0.095  Sum_probs=211.3

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHH
Q 045814           82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFC  159 (427)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~  159 (427)
                      ..+++..|+..|-....-  -++|...|..-..+|...|++++|++=-.+ ....|+ +..|+-...++.-.|++++|+.
T Consensus        14 s~~d~~~ai~~~t~ai~l--~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~   91 (539)
T KOG0548|consen   14 SSGDFETAIRLFTEAIML--SPTNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAIL   91 (539)
T ss_pred             ccccHHHHHHHHHHHHcc--CCCccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHH
Confidence            457788888888777532  244677888888888888888888765544 455666 5678888888888888888888


Q ss_pred             HHHHHHhcCCCcCHhhHHHHHHHHHHcC---Ch---------------------hHH-HHHHHHHHhc------------
Q 045814          160 AFSKLKEMGVFGSIKTWNSALLGCIKID---RT---------------------DLV-WKLYHDLIES------------  202 (427)
Q Consensus       160 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~---~~---------------------~~a-~~~~~~~~~~------------  202 (427)
                      .|.+-++.... +...++-+..++....   +.                     +.+ ..+++.+...            
T Consensus        92 ay~~GL~~d~~-n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r  170 (539)
T KOG0548|consen   92 AYSEGLEKDPS-NKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPR  170 (539)
T ss_pred             HHHHHhhcCCc-hHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHH
Confidence            88877765333 4455555555541110   00                     000 0000000000            


Q ss_pred             ---------------------------------------------------------chhHHHHHhcCChhHHHHHHHHH
Q 045814          203 ---------------------------------------------------------GYLIQAFCNDGKVSEGYELLRQV  225 (427)
Q Consensus       203 ---------------------------------------------------------~~l~~~~~~~g~~~~a~~~~~~~  225 (427)
                                                                               .-+.+...+..++..|.+-+...
T Consensus       171 ~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a  250 (539)
T KOG0548|consen  171 LMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKA  250 (539)
T ss_pred             HHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence                                                                     01556666667777777777777


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH-------HHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814          226 LEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY-------EEVINGLCKSRKRLEAYRVFNDLKER  298 (427)
Q Consensus       226 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-------~~ll~~~~~~~~~~~a~~~~~~m~~~  298 (427)
                      ....  -+..-++....+|...|.+..+...-+...+.|.+ ...-|       ..+..+|.+.++++.|...|.+....
T Consensus       251 ~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaLte  327 (539)
T KOG0548|consen  251 LELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAIKYYQKALTE  327 (539)
T ss_pred             HhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHhhh
Confidence            7654  35555666667778888877777666666655532 11222       23344666777888888888876544


Q ss_pred             CCCCChhhH-------------------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814          299 GYVPDTVMY-------------------------TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       299 ~~~p~~~~~-------------------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  353 (427)
                      -..|+..+=                         ..-...+.+.|++..|...|.+++... +-|...|..-.-+|.+.|
T Consensus       328 ~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsNRAac~~kL~  406 (539)
T KOG0548|consen  328 HRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSNRAACYLKLG  406 (539)
T ss_pred             hcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHHHHHHHHHHh
Confidence            333322111                         111334667789999999999998886 346788888889999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                      .+..|..=.+...+.. ++....|.-=..++....++++|.+.|++..+.  .|+..-+.--+.-|..
T Consensus       407 ~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~--dp~~~e~~~~~~rc~~  471 (539)
T KOG0548|consen  407 EYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALEL--DPSNAEAIDGYRRCVE  471 (539)
T ss_pred             hHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc--CchhHHHHHHHHHHHH
Confidence            9999988877777652 223444544455666677899999999888875  4666555555555554

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.47  E-value=0.00016  Score=68.78  Aligned_cols=108  Identities=15%  Similarity=0.281  Sum_probs=47.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      +.+......|.+|+.+++.+.+....  ..-|..+...|+..|+++.|+++|.+.         ..++-.|..|.+.|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~~--s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKTA--SGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhccc--cccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccH
Confidence            33444445555555555555443221  123444445555555555555555431         1233445555555555


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKM  326 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  326 (427)
                      +.|.++-.+..  |.......|-+-..-.-+.|++.+|+++
T Consensus       808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeql  846 (1636)
T KOG3616|consen  808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQL  846 (1636)
T ss_pred             HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhe
Confidence            55555443332  2222333333333334444444444433

>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO

Probab=98.45  E-value=3.1e-05  Score=66.86  Aligned_cols=160  Identities=11%  Similarity=0.077  Sum_probs=95.5

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhc-
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLV-P-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN--FTYEEVINGLCKS-  282 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~-  282 (427)
                      .+...|++++|...++++...... | ...++..+..++...|++++|...++++.+.......  .++..+..++.+. 
T Consensus        42 ~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~g~~~~~~~  121 (235)
T TIGR03302        42 EALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYYLRGLSNYNQI  121 (235)
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHHHHHHHHHHhc
Confidence            344445555555555555443221 1 1134455566666666666666666666655321111  1233333334333 


Q ss_pred             -------CChHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHccCCHHHHHHHHHHHHHcCC--C
Q 045814          283 -------RKRLEAYRVFNDLKERGYVPDTVMY-----------------TTVIHGLCKMGWLGDARKMWFEMIHKGL--L  336 (427)
Q Consensus       283 -------~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~--~  336 (427)
                             |++++|.+.|+.+.+.... +...+                 ..+...+.+.|++++|...+++..+...  +
T Consensus       122 ~~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~  200 (235)
T TIGR03302       122 DRVDRDQTAAREAFEAFQELIRRYPN-SEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRFETVVENYPDTP  200 (235)
T ss_pred             ccccCCHHHHHHHHHHHHHHHHHCCC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHCCCCc
Confidence                   5566667776666554222 11111                 1345667888999999999999987632  1


Q ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .....+..+..++...|++++|..+++.+...
T Consensus       201 ~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~  232 (235)
T TIGR03302       201 ATEEALARLVEAYLKLGLKDLAQDAAAVLGAN  232 (235)
T ss_pred             chHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            23567888999999999999999999988765

Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.45  E-value=0.0019  Score=62.56  Aligned_cols=291  Identities=14%  Similarity=0.091  Sum_probs=167.9

Q ss_pred             HHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH----------HhcC---------CCcCHh
Q 045814          114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL----------KEMG---------VFGSIK  174 (427)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m----------~~~g---------~~p~~~  174 (427)
                      ..|...|.+++|.++-+....-.--.||......+-..++.+.|++.|++.          ....         -..|..
T Consensus       834 KlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~  913 (1416)
T KOG3617|consen  834 KLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDES  913 (1416)
T ss_pred             HHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchH
Confidence            344556666666666654333333456666666666677788787777642          2211         122556


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHH
Q 045814          175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVS  254 (427)
Q Consensus       175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~  254 (427)
                      .|......+...|+.+.|+.+|.....+-.+.+..|-.|+.++|-++-++-      -|......|.+.|-..|++.+|.
T Consensus       914 L~~WWgqYlES~GemdaAl~~Y~~A~D~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR~YEn~g~v~~Av  987 (1416)
T KOG3617|consen  914 LYSWWGQYLESVGEMDAALSFYSSAKDYFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLARMYENDGDVVKAV  987 (1416)
T ss_pred             HHHHHHHHHhcccchHHHHHHHHHhhhhhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHHHhhhhHHHHHHH
Confidence            667777777889999999999999999989999999999999998776543      25567778889999999999999


Q ss_pred             HHHHHHhhCC--CCC--CHhhHHHHHHHHHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          255 ELLHTMVARN--RAP--DNFTYEEVINGLCKSR--KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       255 ~~~~~m~~~~--~~~--~~~~~~~ll~~~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      ..|.+.....  +..  ....-..|.+.+.-.|  +.-.|-++|++.   |..     +...+-.|-+.|.+.+|+++--
T Consensus       988 ~FfTrAqafsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~~-----~~~AVmLYHkAGm~~kALelAF 1059 (1416)
T KOG3617|consen  988 KFFTRAQAFSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GGY-----AHKAVMLYHKAGMIGKALELAF 1059 (1416)
T ss_pred             HHHHHHHHHHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---chh-----hhHHHHHHHhhcchHHHHHHHH
Confidence            9987754321  000  0000011111111111  222333344332   111     1123344566666666655422


Q ss_pred             H--------HHHcCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH--------------------------CCCCC
Q 045814          329 E--------MIHKGL--LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD--------------------------KGYGE  372 (427)
Q Consensus       329 ~--------m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--------------------------~~~~p  372 (427)
                      +        ++..++  ..|+...+.-...++...++++|..++....+                          .+-.|
T Consensus      1060 ~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~ 1139 (1416)
T KOG3617|consen 1060 RTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMP 1139 (1416)
T ss_pred             hhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCc
Confidence            1        122222  22444455545555555555555555432221                          11122


Q ss_pred             Ch----hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814          373 TT----VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN  427 (427)
Q Consensus       373 ~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e  427 (427)
                      +.    .....+...|.+.|.+..|-+-|-+.-++         -.-++++.++|+.++
T Consensus      1140 ~e~~R~~vLeqvae~c~qQG~Yh~AtKKfTQAGdK---------l~AMraLLKSGdt~K 1189 (1416)
T KOG3617|consen 1140 NEQERKQVLEQVAELCLQQGAYHAATKKFTQAGDK---------LSAMRALLKSGDTQK 1189 (1416)
T ss_pred             cHHHHHHHHHHHHHHHHhccchHHHHHHHhhhhhH---------HHHHHHHHhcCCcce
Confidence            32    45666777888999998888777655432         134566777777654

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.43  E-value=0.00033  Score=58.75  Aligned_cols=154  Identities=18%  Similarity=0.112  Sum_probs=87.0

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK-  316 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-  316 (427)
                      ..-...|+..|++++|++.++...      +......=+..+.+..+.+-|.+.+++|.+-   -+..|.+.|..++.+ 
T Consensus       112 l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~l  182 (299)
T KOG3081|consen  112 LLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKL  182 (299)
T ss_pred             HHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHH
Confidence            333445666677777776665411      2222333334445666667777777777654   244555555555543 


Q ss_pred             ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-
Q 045814          317 ---MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE-  392 (427)
Q Consensus       317 ---~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-  392 (427)
                         .+.+.+|.-+|++|-++ ..|+..+.+....++...|++++|..++++......+ ++.+...+|..-...|...+ 
T Consensus       183 a~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~  260 (299)
T KOG3081|consen  183 ATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGKDAEV  260 (299)
T ss_pred             hccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCCChHH
Confidence               34566777777776653 4566666666666666777777777777777665433 45555555555445554433 


Q ss_pred             HHHHHHHHHH
Q 045814          393 AYHLFEEMAQ  402 (427)
Q Consensus       393 A~~~~~~m~~  402 (427)
                      ..+.+.++..
T Consensus       261 ~~r~l~QLk~  270 (299)
T KOG3081|consen  261 TERNLSQLKL  270 (299)
T ss_pred             HHHHHHHHHh
Confidence            3344455444

>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]

Probab=98.43  E-value=0.00072  Score=62.29  Aligned_cols=139  Identities=17%  Similarity=0.232  Sum_probs=107.7

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHK  363 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~  363 (427)
                      .+....++++++..-..--..+|...+....+..-++.|..+|.++.+.+..+ ++..++++|..||. ++..-|.++|+
T Consensus       347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe  425 (656)
T KOG1914|consen  347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE  425 (656)
T ss_pred             hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence            45556666666544222223467778888888888999999999999998887 78888999998875 68899999999


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCH--hHHHHHHHHHHhcCCC
Q 045814          364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDV--ITYNTLIQGYCKEGKI  425 (427)
Q Consensus       364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~~~~~li~~~~~~g~~  425 (427)
                      .-.+. +.-++.--...++-+...++-..|..+|++....++.||.  ..|..+|+-=+.-|+.
T Consensus       426 LGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL  488 (656)
T KOG1914|consen  426 LGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDL  488 (656)
T ss_pred             HHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccH
Confidence            87765 3335566677888889999999999999999998777664  6899888877777764

>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]

Probab=98.43  E-value=8.8e-05  Score=71.31  Aligned_cols=260  Identities=13%  Similarity=0.128  Sum_probs=164.3

Q ss_pred             CCHhhHHHHHH--HHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc-C--------CCcC
Q 045814          104 PDLVSCNVLFD--SLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM-G--------VFGS  172 (427)
Q Consensus       104 ~~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g--------~~p~  172 (427)
                      -|..|-.++++  .|.-.|+.+.|.+-.+-+   .+...|..+.+.|.+..+++-|.-.+..|... |        ..|+
T Consensus       724 Cd~~TRkaml~FSfyvtiG~MD~AfksI~~I---kS~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~  800 (1416)
T KOG3617|consen  724 CDESTRKAMLDFSFYVTIGSMDAAFKSIQFI---KSDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGE  800 (1416)
T ss_pred             cCHHHHHhhhceeEEEEeccHHHHHHHHHHH---hhhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCc
Confidence            35555555553  455678888886665544   35677888888888888888887777666432 1        1221


Q ss_pred             HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhH
Q 045814          173 IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGR  252 (427)
Q Consensus       173 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~  252 (427)
                       .+-....-.....|..++|+.+|.+-.+.+.|-+.|-..|.+++|+++-+.=-+-.   -..||......+...+|.+.
T Consensus       801 -e~eakvAvLAieLgMlEeA~~lYr~ckR~DLlNKlyQs~g~w~eA~eiAE~~DRiH---Lr~Tyy~yA~~Lear~Di~~  876 (1416)
T KOG3617|consen  801 -EDEAKVAVLAIELGMLEEALILYRQCKRYDLLNKLYQSQGMWSEAFEIAETKDRIH---LRNTYYNYAKYLEARRDIEA  876 (1416)
T ss_pred             -chhhHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHhhcccee---hhhhHHHHHHHHHhhccHHH
Confidence             23333334456789999999999999999999999999999999988765432222   23577777777777889999


Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          253 VSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      |++.|++....    --.++..|.      .++...+.+.+++.      |...|.--.+.....|+.+.|+.+|.....
T Consensus       877 AleyyEK~~~h----afev~rmL~------e~p~~~e~Yv~~~~------d~~L~~WWgqYlES~GemdaAl~~Y~~A~D  940 (1416)
T KOG3617|consen  877 ALEYYEKAGVH----AFEVFRMLK------EYPKQIEQYVRRKR------DESLYSWWGQYLESVGEMDAALSFYSSAKD  940 (1416)
T ss_pred             HHHHHHhcCCh----HHHHHHHHH------hChHHHHHHHHhcc------chHHHHHHHHHHhcccchHHHHHHHHHhhh
Confidence            99888764221    111111111      12333333334333      334455555556667777777777766543


Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                               |-++++..|-+|+.++|-++-++-   |   |....-.|.+.|-..|++.+|..+|-+.+
T Consensus       941 ---------~fs~VrI~C~qGk~~kAa~iA~es---g---d~AAcYhlaR~YEn~g~v~~Av~FfTrAq  994 (1416)
T KOG3617|consen  941 ---------YFSMVRIKCIQGKTDKAARIAEES---G---DKAACYHLARMYENDGDVVKAVKFFTRAQ  994 (1416)
T ss_pred             ---------hhhheeeEeeccCchHHHHHHHhc---c---cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence                     345556666677777777665542   1   44555566677777777777777766554

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.40  E-value=5.8e-07  Score=51.51  Aligned_cols=33  Identities=61%  Similarity=0.986  Sum_probs=28.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD  408 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~  408 (427)
                      +||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            688888888888888888888888888888887

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.38  E-value=0.00013  Score=60.94  Aligned_cols=159  Identities=14%  Similarity=0.062  Sum_probs=109.7

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM  317 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  317 (427)
                      ..+-..+...|+-+....+........ ..|.......+....+.|++.+|...|++...... +|..+|+.+.-+|.+.
T Consensus        70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p-~d~~~~~~lgaaldq~  147 (257)
T COG5010          70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAP-TDWEAWNLLGAALDQL  147 (257)
T ss_pred             HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCC-CChhhhhHHHHHHHHc
Confidence            444555666666666666665543321 22444555577777788888888888888776543 4777888888888888


Q ss_pred             CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814          318 GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF  397 (427)
Q Consensus       318 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  397 (427)
                      |+.++|..-|.+..+.... +...++.+.-.|.-.|+.+.|..++......+.. |..+-..+.......|++++|..+-
T Consensus       148 Gr~~~Ar~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~  225 (257)
T COG5010         148 GRFDEARRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIA  225 (257)
T ss_pred             cChhHHHHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhc
Confidence            8888888888887776332 4556777777777778888888888877766433 6666677777777888888887776


Q ss_pred             HHH
Q 045814          398 EEM  400 (427)
Q Consensus       398 ~~m  400 (427)
                      ..-
T Consensus       226 ~~e  228 (257)
T COG5010         226 VQE  228 (257)
T ss_pred             ccc
Confidence            443

>KOG3616 consensus Selective LIM binding factor [Transcription]

Probab=98.36  E-value=9.8e-05  Score=70.15  Aligned_cols=109  Identities=17%  Similarity=0.159  Sum_probs=74.7

Q ss_pred             HHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 045814          241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL  320 (427)
Q Consensus       241 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  320 (427)
                      +.+......|.+|+.+++.+.....  -..-|..+.+.|...|+++.|+++|.+.-         .++-.|..|.++|++
T Consensus       739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw  807 (1636)
T KOG3616|consen  739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKW  807 (1636)
T ss_pred             HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccH
Confidence            4445566778888888887776633  34567888899999999999999997542         345578899999999


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814          321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH  362 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  362 (427)
                      +.|.++-.+..  |.......|-+-..-.-+.|.+.+|+++|
T Consensus       808 ~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeqly  847 (1636)
T KOG3616|consen  808 EDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQLY  847 (1636)
T ss_pred             HHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhhee
Confidence            99998876653  33334444544444444555555555444

>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]

Probab=98.35  E-value=5.5e-05  Score=63.20  Aligned_cols=154  Identities=13%  Similarity=0.068  Sum_probs=117.2

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814          209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA  288 (427)
Q Consensus       209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  288 (427)
                      +...|+-+....+......... .|....+..+....+.|++..|...+.+..... ++|...|+.+.-+|.+.|+.++|
T Consensus        76 ~~~~G~a~~~l~~~~~~~~~~~-~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~Gr~~~A  153 (257)
T COG5010          76 LYLRGDADSSLAVLQKSAIAYP-KDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLGRFDEA  153 (257)
T ss_pred             HHhcccccchHHHHhhhhccCc-ccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHccChhHH
Confidence            3344555555555554433222 266666678888889999999999999887664 56888999999999999999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      ..-|.+..+.-.. +...+|.+.-.+.-.|+.+.|..++......+.. |...-..+.......|++++|+.+...-.
T Consensus       154 r~ay~qAl~L~~~-~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~e~  229 (257)
T COG5010         154 RRAYRQALELAPN-EPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQEL  229 (257)
T ss_pred             HHHHHHHHHhccC-CchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccccc
Confidence            9999998887554 5667788888888889999999999988887543 66667777778888999999988876544

>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.33  E-value=0.0016  Score=64.51  Aligned_cols=279  Identities=14%  Similarity=0.135  Sum_probs=197.7

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHh----------------cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC--C
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDS----------------TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMG--V  169 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~----------------~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--~  169 (427)
                      .|-...+.+.+..+.+.-.+++.+                .+-..|++..+.-.+++...+...+-.++++++.-..  .
T Consensus       938 lfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~F 1017 (1666)
T KOG0985|consen  938 LFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVF 1017 (1666)
T ss_pred             HHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCccc
Confidence            444555556666665554444421                1334567777788899999999999999999987432  1


Q ss_pred             CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 045814          170 FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK  247 (427)
Q Consensus       170 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  247 (427)
                      .-+...-|.|+-...+ .+..++.+..+++-..+.  +...+...+-+++|..+|++..     .+....+.||.-   -
T Consensus      1018 se~~nLQnLLiLtAik-ad~trVm~YI~rLdnyDa~~ia~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i 1088 (1666)
T KOG0985|consen 1018 SENRNLQNLLILTAIK-ADRTRVMEYINRLDNYDAPDIAEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---I 1088 (1666)
T ss_pred             ccchhhhhhHHHHHhh-cChHHHHHHHHHhccCCchhHHHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---h
Confidence            1122223333333333 455566677666665543  6777778888999999998754     245566666643   4


Q ss_pred             CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 045814          248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW  327 (427)
Q Consensus       248 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  327 (427)
                      +.++.|.+.-++..      ...+|+.+..+-.+.|...+|.+-|-+..      |+..|.-++....+.|.+++..+++
T Consensus      1089 ~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSyikad------Dps~y~eVi~~a~~~~~~edLv~yL 1156 (1666)
T KOG0985|consen 1089 GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESYIKAD------DPSNYLEVIDVASRTGKYEDLVKYL 1156 (1666)
T ss_pred             hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHHHhcC------CcHHHHHHHHHHHhcCcHHHHHHHH
Confidence            56777776655432      34689999999999999999988776542      7789999999999999999999999


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814          328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR  407 (427)
Q Consensus       328 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  407 (427)
                      ...++..-.|...  +.+|-+|++.+++.+-++++       ..||......+.+-|...|.++.|.-+|....      
T Consensus      1157 ~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~i~~vGdrcf~~~~y~aAkl~y~~vS------ 1221 (1666)
T KOG0985|consen 1157 LMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVANIQQVGDRCFEEKMYEAAKLLYSNVS------ 1221 (1666)
T ss_pred             HHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchhHHHHhHHHhhhhhhHHHHHHHHHhh------
Confidence            9988887666654  67899999999987766543       24788999999999999999999888776543      


Q ss_pred             CHhHHHHHHHHHHhcCCC
Q 045814          408 DVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       408 ~~~~~~~li~~~~~~g~~  425 (427)
                         .|..|...+...|++
T Consensus      1222 ---N~a~La~TLV~Lgey 1236 (1666)
T KOG0985|consen 1222 ---NFAKLASTLVYLGEY 1236 (1666)
T ss_pred             ---hHHHHHHHHHHHHHH
Confidence               355555555555543

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.32  E-value=1.1e-06  Score=49.97  Aligned_cols=33  Identities=36%  Similarity=0.607  Sum_probs=24.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814          375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR  407 (427)
Q Consensus       375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  407 (427)
                      .+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus         2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P   34 (34)
T PF13812_consen    2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP   34 (34)
T ss_pred             cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence            467777777777777777777777777777766

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.30  E-value=0.00011  Score=57.82  Aligned_cols=92  Identities=9%  Similarity=-0.079  Sum_probs=47.2

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 045814          309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHG  388 (427)
Q Consensus       309 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  388 (427)
                      .....+.+.|++++|...|+...... +.+...+..+..++...|++++|...|+...+.. +.+...+..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            34444455555555555555555442 1234445555555555555555555555555432 124455555555555555


Q ss_pred             CHHHHHHHHHHHHH
Q 045814          389 RTDEAYHLFEEMAQ  402 (427)
Q Consensus       389 ~~~~A~~~~~~m~~  402 (427)
                      ++++|...|+...+
T Consensus       107 ~~~eAi~~~~~Al~  120 (144)
T PRK15359        107 EPGLAREAFQTAIK  120 (144)
T ss_pred             CHHHHHHHHHHHHH
Confidence            55555555555554

>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=98.27  E-value=0.00028  Score=59.11  Aligned_cols=183  Identities=17%  Similarity=0.085  Sum_probs=128.0

Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHH-HHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 045814          231 VPENTAFNKLISRFCEKKNFGRVSE-LLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT  309 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  309 (427)
                      .|....+..+......-++.++-.. +.+.+.......+......-...|+..|++++|++......      +......
T Consensus        69 ~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al  142 (299)
T KOG3081|consen   69 ATPLQAVRLLAEYLELESNKKSILASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAAL  142 (299)
T ss_pred             CChHHHHHHHHHHhhCcchhHHHHHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHH
Confidence            3444444444444444444444333 44444444344343444455567889999999999988732      2223333


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      =+..+.+..+.+-|.+.+++|.+-.   +..|.+.|..++.+    .+.+..|.-+|++|.++ .+|+..+.+-...++.
T Consensus       143 ~VqI~lk~~r~d~A~~~lk~mq~id---ed~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l  218 (299)
T KOG3081|consen  143 NVQILLKMHRFDLAEKELKKMQQID---EDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHL  218 (299)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHccc---hHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHH
Confidence            3455678888999999999999853   66788877777654    35799999999999875 7889999999999999


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814          386 LHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK  424 (427)
Q Consensus       386 ~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  424 (427)
                      ..|++++|..++++...+... ++.|..-+|-.--..|+
T Consensus       219 ~~~~~eeAe~lL~eaL~kd~~-dpetL~Nliv~a~~~Gk  256 (299)
T KOG3081|consen  219 QLGRYEEAESLLEEALDKDAK-DPETLANLIVLALHLGK  256 (299)
T ss_pred             HhcCHHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHhCC
Confidence            999999999999999987544 56666666665555554

>PRK15359 type III secretion system chaperone protein SscB; Provisional

Probab=98.26  E-value=0.00012  Score=57.64  Aligned_cols=93  Identities=5%  Similarity=-0.176  Sum_probs=52.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814          274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  353 (427)
                      .....+...|++++|...|+........ +...|..+..++.+.|++++|...|+...... +.+..++..+..++...|
T Consensus        29 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~g  106 (144)
T PRK15359         29 ASGYASWQEGDYSRAVIDFSWLVMAQPW-SWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMMG  106 (144)
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHcC
Confidence            3444555566666666666665554332 44555555566666666666666666665543 224455555555566666


Q ss_pred             CHHHHHHHHHHHHHC
Q 045814          354 NLEEAKRLHKEMLDK  368 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~  368 (427)
                      +.++|...|+...+.
T Consensus       107 ~~~eAi~~~~~Al~~  121 (144)
T PRK15359        107 EPGLAREAFQTAIKM  121 (144)
T ss_pred             CHHHHHHHHHHHHHh
Confidence            666666666665553

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.25  E-value=0.0025  Score=55.55  Aligned_cols=299  Identities=11%  Similarity=0.076  Sum_probs=156.1

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCCHhhHHHH---HHHHHHcCChHHHHHHHHh-cCCCCCHHhH-HHHHHHHHhcCChhH
Q 045814           82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVL---FDSLVEARAFKVAMDFLDS-TGFSPNPNSL-ELYIQCLCESGLIEE  156 (427)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---l~~~~~~~~~~~a~~~~~~-~~~~~~~~~~-~~li~~~~~~~~~~~  156 (427)
                      ..+.+..|+.-|+.+.     .-|+..|.++   ...|...|+-..|+.=+.+ ....||-..- -.-...+.+.|.+++
T Consensus        50 a~~Q~sDALt~yHaAv-----e~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlelKpDF~~ARiQRg~vllK~Gele~  124 (504)
T KOG0624|consen   50 ARGQLSDALTHYHAAV-----EGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLELKPDFMAARIQRGVVLLKQGELEQ  124 (504)
T ss_pred             HhhhHHHHHHHHHHHH-----cCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhcCccHHHHHHHhchhhhhcccHHH
Confidence            3455555555555553     2333333333   3455556665555555544 3445553321 112344566777777


Q ss_pred             HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH
Q 045814          157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTA  236 (427)
Q Consensus       157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~  236 (427)
                      |..=|+...+....  ..+   ...+..+.--.++-..+..       .+..+...|+...|+.....+++..+- |...
T Consensus       125 A~~DF~~vl~~~~s--~~~---~~eaqskl~~~~e~~~l~~-------ql~s~~~~GD~~~ai~~i~~llEi~~W-da~l  191 (504)
T KOG0624|consen  125 AEADFDQVLQHEPS--NGL---VLEAQSKLALIQEHWVLVQ-------QLKSASGSGDCQNAIEMITHLLEIQPW-DASL  191 (504)
T ss_pred             HHHHHHHHHhcCCC--cch---hHHHHHHHHhHHHHHHHHH-------HHHHHhcCCchhhHHHHHHHHHhcCcc-hhHH
Confidence            77777777665321  111   0111111111111111111       233455566777777777766664332 6666


Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh----HHHH--
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM----YTTV--  310 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~----~~~l--  310 (427)
                      |..-..+|...|++..|+.=++..-+..- -+..++--+-..+.+.|+.+.++...++-++.  .||...    |-.+  
T Consensus       192 ~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK~Cf~~YKklkK  268 (504)
T KOG0624|consen  192 RQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHKLCFPFYKKLKK  268 (504)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--CcchhhHHHHHHHHHH
Confidence            66666777777777777666655544322 23444555556666777777777666666554  233321    1111  


Q ss_pred             -------HHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHH
Q 045814          311 -------IHGLCKMGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNT  379 (427)
Q Consensus       311 -------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~  379 (427)
                             +......+++.++..-.+...+.........   +..+-.+|...|++.+|++...+..+.  .| |+.++.-
T Consensus       269 v~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~--d~~dv~~l~d  346 (504)
T KOG0624|consen  269 VVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDI--DPDDVQVLCD  346 (504)
T ss_pred             HHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhc--CchHHHHHHH
Confidence                   1123344566666666666655532212222   334455666667777777777777654  23 3556666


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          380 LIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      -..+|.-...+++|+.-|+...+.
T Consensus       347 RAeA~l~dE~YD~AI~dye~A~e~  370 (504)
T KOG0624|consen  347 RAEAYLGDEMYDDAIHDYEKALEL  370 (504)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHhc
Confidence            666666666677777666666553

>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional

Probab=98.25  E-value=0.0006  Score=68.42  Aligned_cols=210  Identities=8%  Similarity=-0.045  Sum_probs=134.2

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHH--HH----------------hcCCCC-CH
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDF--LD----------------STGFSP-NP  138 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~--~~----------------~~~~~~-~~  138 (427)
                      ......++++.|.++++.......-.+....+..+  .+.+.++.+.+.-+  .+                .++.-+ +.
T Consensus        39 ~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~--l~~q~~~~~~~~lv~~l~~~~~~~~~~~ve~~~~~i~~~~~~k  116 (906)
T PRK14720         39 DAYKSENLTDEAKDICEEHLKEHKKSISALYISGI--LSLSRRPLNDSNLLNLIDSFSQNLKWAIVEHICDKILLYGENK  116 (906)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHH--HHHhhcchhhhhhhhhhhhcccccchhHHHHHHHHHHhhhhhh
Confidence            44557799999999999776543333333344433  56666666655444  11                111111 12


Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG  218 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a  218 (427)
                      .++-.+..+|-+.|+.++|..+|+++.+.... |+.+.|.+...|+.. +.++|.+++...+..      +...+++..+
T Consensus       117 ~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~-n~~aLNn~AY~~ae~-dL~KA~~m~~KAV~~------~i~~kq~~~~  188 (906)
T PRK14720        117 LALRTLAEAYAKLNENKKLKGVWERLVKADRD-NPEIVKKLATSYEEE-DKEKAITYLKKAIYR------FIKKKQYVGI  188 (906)
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH------HHhhhcchHH
Confidence            46677888888999999999999999998855 889999999999999 999999999988764      6777788888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE  297 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  297 (427)
                      .+++.++....+. +...+..++                +.+... |..--+.++-.+...|...++++++..++..+.+
T Consensus       189 ~e~W~k~~~~~~~-d~d~f~~i~----------------~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~  251 (906)
T PRK14720        189 EEIWSKLVHYNSD-DFDFFLRIE----------------RKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILE  251 (906)
T ss_pred             HHHHHHHHhcCcc-cchHHHHHH----------------HHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh
Confidence            8888888775433 222222221                111111 1122234455555666666677777777777766


Q ss_pred             CCCCCChhhHHHHHHHHH
Q 045814          298 RGYVPDTVMYTTVIHGLC  315 (427)
Q Consensus       298 ~~~~p~~~~~~~li~~~~  315 (427)
                      ...+ |.....-++..|.
T Consensus       252 ~~~~-n~~a~~~l~~~y~  268 (906)
T PRK14720        252 HDNK-NNKAREELIRFYK  268 (906)
T ss_pred             cCCc-chhhHHHHHHHHH
Confidence            5433 4444444555544

>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]

Probab=98.24  E-value=0.0019  Score=62.14  Aligned_cols=129  Identities=13%  Similarity=0.029  Sum_probs=104.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGY  349 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~  349 (427)
                      .|......+.+.+..++|...+.+..+... -.+..|......+...|..++|.+.|......  .|+ +....++..++
T Consensus       652 lwllaa~~~~~~~~~~~a~~CL~Ea~~~~~-l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~l--dP~hv~s~~Ala~~l  728 (799)
T KOG4162|consen  652 LWLLAADLFLLSGNDDEARSCLLEASKIDP-LSASVYYLRGLLLEVKGQLEEAKEAFLVALAL--DPDHVPSMTALAELL  728 (799)
T ss_pred             HHHHHHHHHHhcCCchHHHHHHHHHHhcch-hhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhc--CCCCcHHHHHHHHHH
Confidence            455666778888999999888887766532 25667777777888889999999999988875  344 56788889999


Q ss_pred             hhcCCHHHHHH--HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKR--LHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       350 ~~~g~~~~a~~--~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .+.|+...|..  ++.++.+.+.. +...|-.+...+-+.|+.+.|.+.|....+.
T Consensus       729 le~G~~~la~~~~~L~dalr~dp~-n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qL  783 (799)
T KOG4162|consen  729 LELGSPRLAEKRSLLSDALRLDPL-NHEAWYYLGEVFKKLGDSKQAAECFQAALQL  783 (799)
T ss_pred             HHhCCcchHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHccchHHHHHHHHHHHhh
Confidence            99998887777  99999987644 7899999999999999999999999887764

>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif)

Probab=98.23  E-value=2.4e-06  Score=48.86  Aligned_cols=32  Identities=41%  Similarity=0.885  Sum_probs=13.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN  338 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  338 (427)
                      ||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus         3 ~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~   34 (35)
T TIGR00756         3 YNTLIDGLCKAGRVEEALELFKEMLERGIEPD   34 (35)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence            44444444444444444444444444444443

This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.

>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional

Probab=98.23  E-value=0.00046  Score=68.28  Aligned_cols=135  Identities=12%  Similarity=0.057  Sum_probs=115.8

Q ss_pred             CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814          266 APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM  345 (427)
Q Consensus       266 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  345 (427)
                      ..+...+-.|.....+.|.+++|+.+++...+.... +......+...+.+.+++++|...+++....... +......+
T Consensus        83 ~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd-~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~-~~~~~~~~  160 (694)
T PRK15179         83 PHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPD-SSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSS-SAREILLE  160 (694)
T ss_pred             cccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCC-CHHHHHHH
Confidence            446788899999999999999999999999987433 4557778889999999999999999999987432 56677788


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..++.+.|++++|..+|+++...+ +-+...+..+..++...|+.++|...|++..+.
T Consensus       161 a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~  217 (694)
T PRK15179        161 AKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA  217 (694)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            889999999999999999999843 235788999999999999999999999998774

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.22  E-value=2.6e-05  Score=71.56  Aligned_cols=123  Identities=10%  Similarity=0.154  Sum_probs=79.2

Q ss_pred             CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC--CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045814          265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER--GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY  342 (427)
Q Consensus       265 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  342 (427)
                      ...+......+++.+....+.+.+..++.+....  ....-..|..++++.|.+.|..++++.+++.=...|+.||..++
T Consensus        62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~  141 (429)
T PF10037_consen   62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF  141 (429)
T ss_pred             CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence            3445556666666666666677777777666544  22122334457777777777777777777777777777777777


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       343 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      |.+|+.+.+.|++..|.++...|...+...+..|+..-+.+|.+-
T Consensus       142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            777777777777777777777766665555556665555555444

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.21  E-value=0.00011  Score=57.29  Aligned_cols=94  Identities=13%  Similarity=0.063  Sum_probs=50.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL  386 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  386 (427)
                      ...+...+...|++++|...++.+...+ +.+...+..+..++...|++++|..+++...+.+ +.+...+..+...|..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-PDDPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHH
Confidence            3444455555555666665555555543 2244455555555555566666666655555442 2234455555555556


Q ss_pred             cCCHHHHHHHHHHHHH
Q 045814          387 HGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       387 ~g~~~~A~~~~~~m~~  402 (427)
                      .|++++|...|+...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            6666666666655555

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]

Probab=98.21  E-value=0.003  Score=55.09  Aligned_cols=277  Identities=12%  Similarity=0.059  Sum_probs=165.8

Q ss_pred             HHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHH---HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHH-HHHHHHH
Q 045814          109 CNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYI---QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWN-SALLGCI  184 (427)
Q Consensus       109 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li---~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~-~ll~~~~  184 (427)
                      .--+-..+...|++..|+.-|... +.-|+..|-++.   ..|...|+...|+.=+.+..+.  +||-..-. .-...  
T Consensus        41 hlElGk~lla~~Q~sDALt~yHaA-ve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~v--  115 (504)
T KOG0624|consen   41 HLELGKELLARGQLSDALTHYHAA-VEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVV--  115 (504)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHH-HcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchh--
Confidence            333445555556666666555542 123333343332   3455556666666666555553  44422111 11123  


Q ss_pred             HcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC------------CH--HHHHHHHHHHHccCCh
Q 045814          185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP------------EN--TAFNKLISRFCEKKNF  250 (427)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------------~~--~~~~~li~~~~~~~~~  250 (427)
                                              +.+.|.+++|..-|+..++....-            ..  ......+..+.-.|+.
T Consensus       116 ------------------------llK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~  171 (504)
T KOG0624|consen  116 ------------------------LLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDC  171 (504)
T ss_pred             ------------------------hhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCch
Confidence                                    344555555555555554433210            01  1122234456678999


Q ss_pred             hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814          251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM  330 (427)
Q Consensus       251 ~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  330 (427)
                      ..|+.....+.+-. +-|...|..-..+|...|++..|+.-+....+..-. ++.++--+-..+...|+.+.++...++.
T Consensus       172 ~~ai~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~D-nTe~~ykis~L~Y~vgd~~~sL~~iREC  249 (504)
T KOG0624|consen  172 QNAIEMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQD-NTEGHYKISQLLYTVGDAENSLKEIREC  249 (504)
T ss_pred             hhHHHHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhcccc-chHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence            99999999998874 347788888899999999999999888877666443 5555666677788899999999999888


Q ss_pred             HHcCCCCCHHH-HH---H---H------HHHHhhcCCHHHHHHHHHHHHHCCCCCCh---hhHHHHHHHHHhcCCHHHHH
Q 045814          331 IHKGLLPNEYT-YN---S---M------IHGYCRIDNLEEAKRLHKEMLDKGYGETT---VTYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       331 ~~~~~~p~~~~-~~---~---l------i~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~A~  394 (427)
                      .+.  .||... |.   .   +      +......++|.++.+-.+...+.......   ..+..+-.++...|++.+|+
T Consensus       250 LKl--dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAi  327 (504)
T KOG0624|consen  250 LKL--DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAI  327 (504)
T ss_pred             Hcc--CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHH
Confidence            875  455432 21   1   1      12234556777888777777765332122   23445556777889999999


Q ss_pred             HHHHHHHHCCCCCC-HhHHHHHHHHHH
Q 045814          395 HLFEEMAQKGIFRD-VITYNTLIQGYC  420 (427)
Q Consensus       395 ~~~~~m~~~g~~p~-~~~~~~li~~~~  420 (427)
                      ....+..+.  .|| +.++.--..+|.
T Consensus       328 qqC~evL~~--d~~dv~~l~dRAeA~l  352 (504)
T KOG0624|consen  328 QQCKEVLDI--DPDDVQVLCDRAEAYL  352 (504)
T ss_pred             HHHHHHHhc--CchHHHHHHHHHHHHh
Confidence            998888863  454 444444444443

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.17  E-value=0.00082  Score=61.29  Aligned_cols=118  Identities=15%  Similarity=0.176  Sum_probs=68.9

Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHH
Q 045814          244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGD  322 (427)
Q Consensus       244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~  322 (427)
                      +...|++++|+..+..++..- +-|...+....+.+.+.++..+|.+.++++...  .|+ ....-.+..++.+.|++.+
T Consensus       316 ~~~~~~~d~A~~~l~~L~~~~-P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~e  392 (484)
T COG4783         316 TYLAGQYDEALKLLQPLIAAQ-PDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQE  392 (484)
T ss_pred             HHHhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHH
Confidence            344566666666666665552 123444445556666666666666666666655  233 3344445566666666666


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      |..+++...... +-|...|..|..+|...|+..++..-..+.
T Consensus       393 ai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~~~a~~A~AE~  434 (484)
T COG4783         393 AIRILNRYLFND-PEDPNGWDLLAQAYAELGNRAEALLARAEG  434 (484)
T ss_pred             HHHHHHHHhhcC-CCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence            666666665553 335566666666666666666666555554

>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms

Probab=98.17  E-value=4.9e-05  Score=69.82  Aligned_cols=125  Identities=13%  Similarity=0.115  Sum_probs=106.5

Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN--RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV  305 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  305 (427)
                      .+...+......+++.+....+.+.+..++.+.....  ...-..|..++++.|.+.|..+++..++..=...|+-||..
T Consensus        60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~  139 (429)
T PF10037_consen   60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF  139 (429)
T ss_pred             cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence            3445578888999999999999999999999887762  22334567799999999999999999999999999999999


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI  352 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  352 (427)
                      ++|.+|..+.+.|++..|.++...|...+...+..|+..-+.+|.+.
T Consensus       140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~  186 (429)
T PF10037_consen  140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY  186 (429)
T ss_pred             hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence            99999999999999999999999998888777888887777766665

The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.15  E-value=0.00018  Score=65.86  Aligned_cols=125  Identities=14%  Similarity=0.119  Sum_probs=88.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR  351 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  351 (427)
                      ...++..+...++++.|..+|+++.+..  |+  ....++..+...++-.+|.+++++..+.. +-+...+..-...|.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence            3455556666778888888888887763  33  34446677777777778888888877652 2255566666667778


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       352 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .++++.|..+.+++.+.. +-+-.+|..|..+|...|+++.|+-.++.+..
T Consensus       247 k~~~~lAL~iAk~av~ls-P~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm  296 (395)
T PF09295_consen  247 KKKYELALEIAKKAVELS-PSEFETWYQLAECYIQLGDFENALLALNSCPM  296 (395)
T ss_pred             cCCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHhcCCHHHHHHHHhcCcC
Confidence            888888888888887752 22456888888888888888888888777664

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>PF13812 PPR_3: Pentatricopeptide repeat domain

Probab=98.15  E-value=4e-06  Score=47.54  Aligned_cols=29  Identities=24%  Similarity=0.400  Sum_probs=11.0

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGL  335 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~  335 (427)
                      |+++|.+|++.|+++.|.+++++|.+.|+
T Consensus         4 y~~ll~a~~~~g~~~~a~~~~~~M~~~gv   32 (34)
T PF13812_consen    4 YNALLRACAKAGDPDAALQLFDEMKEQGV   32 (34)
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCC
Confidence            33333333333333333333333333333

>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD

Probab=98.14  E-value=0.00014  Score=56.59  Aligned_cols=94  Identities=13%  Similarity=0.038  Sum_probs=44.5

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK  316 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  316 (427)
                      ...+...+...|++++|.+.++.....+ +.+...+..+...+.+.|++++|...++...+.+.. +...+..+...+..
T Consensus        20 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~la~~~~~   97 (135)
T TIGR02552        20 IYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPD-DPRPYFHAAECLLA   97 (135)
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHH
Confidence            3344444445555555555555544432 123344444455555555555555555554444321 33344444444555


Q ss_pred             cCCHHHHHHHHHHHHH
Q 045814          317 MGWLGDARKMWFEMIH  332 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~  332 (427)
                      .|+.++|...++...+
T Consensus        98 ~g~~~~A~~~~~~al~  113 (135)
T TIGR02552        98 LGEPESALKALDLAIE  113 (135)
T ss_pred             cCCHHHHHHHHHHHHH
Confidence            5555555555555444

ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=98.10  E-value=0.0064  Score=59.64  Aligned_cols=193  Identities=15%  Similarity=0.079  Sum_probs=118.5

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY  289 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  289 (427)
                      .+.|+.++|..+++.....+.. |..|...+-.+|.+.++.++|..+|++....  .|+......+..+|.+.+.+.+-.
T Consensus        54 ~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~--~P~eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   54 FRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQK--YPSEELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhh--CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4566677777666666655555 7778888888888888888888888887766  455666677777777777776544


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHccCC----------HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHhhcCCHHHH
Q 045814          290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGW----------LGDARKMWFEMIHKG-LLPNEYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a  358 (427)
                      ++=-+|.+.- .-+...+-++++.+.+.-.          ..-|.+..+.+.+.+ .--+..-...........|++++|
T Consensus       131 kaa~~LyK~~-pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea  209 (932)
T KOG2053|consen  131 KAALQLYKNF-PKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA  209 (932)
T ss_pred             HHHHHHHHhC-CcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence            4433333321 1244555555555554321          234566666666554 111222222223344567788888


Q ss_pred             HHHH-HHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045814          359 KRLH-KEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       359 ~~~~-~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  406 (427)
                      ..++ ....+.-..-+...-+.-++.+...++|.+..++..++..+|-.
T Consensus       210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~D  258 (932)
T KOG2053|consen  210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGND  258 (932)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCCc
Confidence            8887 34444333334445556677777888888888888888777533

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=98.09  E-value=4.9e-06  Score=46.02  Aligned_cols=30  Identities=50%  Similarity=0.979  Sum_probs=21.2

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQKGI  405 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  405 (427)
                      +|+++|++|++.|++++|.++|++|.+.|+
T Consensus         2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~   31 (31)
T PF01535_consen    2 TYNSLISGYCKMGQFEEALEVFDEMRERGI   31 (31)
T ss_pred             cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence            577777777777777777777777776653

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.08  E-value=6.8e-05  Score=54.13  Aligned_cols=70  Identities=11%  Similarity=0.232  Sum_probs=36.0

Q ss_pred             cCCHHHHHHHHHHHHHCCC-CCChhhHHHHHHHHHhcC--------CHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          352 IDNLEEAKRLHKEMLDKGY-GETTVTYNTLIAGLCLHG--------RTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       352 ~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                      .+++.....+|+.++..|+ -|+..+|+.++.+.++..        +.-+++.+|++|...+++|+..||+.++..+.+
T Consensus        38 ~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl~~Llk  116 (120)
T PF08579_consen   38 NEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVLGSLLK  116 (120)
T ss_pred             hcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHHHHH
Confidence            3444444555555554444 444555555544443321        233455566666666666666666666655543

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]

Probab=98.08  E-value=0.00049  Score=62.73  Aligned_cols=159  Identities=14%  Similarity=0.047  Sum_probs=97.7

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045814          232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI  311 (427)
Q Consensus       232 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  311 (427)
                      |+...+...+........-..+...+.+..+.  .-...-|..-+ .+...|++++|+..++.+.+.-.. |+..+....
T Consensus       272 ~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~--~~~aa~YG~A~-~~~~~~~~d~A~~~l~~L~~~~P~-N~~~~~~~~  347 (484)
T COG4783         272 PDFQLARARIRAKYEALPNQQAADLLAKRSKR--GGLAAQYGRAL-QTYLAGQYDEALKLLQPLIAAQPD-NPYYLELAG  347 (484)
T ss_pred             ccHHHHHHHHHHHhccccccchHHHHHHHhCc--cchHHHHHHHH-HHHHhcccchHHHHHHHHHHhCCC-CHHHHHHHH
Confidence            45555555555544433333333333322221  11223344333 344678888888888887766322 455555666


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT  390 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  390 (427)
                      ..+.+.|+.++|.+.++++...  .|+ ....-.+..+|.+.|++.+|.+++++..... +-|+..|..|.++|...|+.
T Consensus       348 ~i~~~~nk~~~A~e~~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~-p~dp~~w~~LAqay~~~g~~  424 (484)
T COG4783         348 DILLEANKAKEAIERLKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND-PEDPNGWDLLAQAYAELGNR  424 (484)
T ss_pred             HHHHHcCChHHHHHHHHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC-CCCchHHHHHHHHHHHhCch
Confidence            7788888888888888888776  455 4445556777888888888888888877663 44777888887777766555


Q ss_pred             HHHHHHH
Q 045814          391 DEAYHLF  397 (427)
Q Consensus       391 ~~A~~~~  397 (427)
                      .+|..-.
T Consensus       425 ~~a~~A~  431 (484)
T COG4783         425 AEALLAR  431 (484)
T ss_pred             HHHHHHH
Confidence            5444433

>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends

Probab=98.07  E-value=7.7e-05  Score=53.86  Aligned_cols=75  Identities=16%  Similarity=0.292  Sum_probs=39.5

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHhhcC--------CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGL-LPNEYTYNSMIHGYCRID--------NLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g--------~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      |..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..        .+.+.+.+|++|...+++|+..+|+.++
T Consensus        32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYnivl  111 (120)
T PF08579_consen   32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIVL  111 (120)
T ss_pred             HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence            3334444555555555555555555 555555555555544432        2334455555565555666666666655


Q ss_pred             HHHH
Q 045814          382 AGLC  385 (427)
Q Consensus       382 ~~~~  385 (427)
                      ..+.
T Consensus       112 ~~Ll  115 (120)
T PF08579_consen  112 GSLL  115 (120)
T ss_pred             HHHH
Confidence            5544

Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=98.03  E-value=0.00029  Score=55.61  Aligned_cols=125  Identities=13%  Similarity=0.100  Sum_probs=70.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE--YTYNSM  345 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~l  345 (427)
                      .|..++..+ ..++...+...++.+.+.... +   ....-.+...+...|++++|...|+........|+.  ...-.+
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~-s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L   91 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPS-SPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL   91 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence            344444444 366666666666666655322 1   112223345566677777777777777765422221  123334


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEE  399 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~  399 (427)
                      ...+...|++++|...++......  .....+....+.|.+.|++++|...|+.
T Consensus        92 A~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~  143 (145)
T PF09976_consen   92 ARILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK  143 (145)
T ss_pred             HHHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            556667777777777775543322  2344555666777777777777777765

>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi

Probab=98.01  E-value=0.00028  Score=64.64  Aligned_cols=122  Identities=16%  Similarity=0.179  Sum_probs=71.0

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK  316 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  316 (427)
                      ...|+..+...++++.|.++++++.+..  |+  ....+.+.+...++-.+|.+++++..+.... +......-...+.+
T Consensus       172 v~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~-d~~LL~~Qa~fLl~  246 (395)
T PF09295_consen  172 VDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQ-DSELLNLQAEFLLS  246 (395)
T ss_pred             HHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHh
Confidence            3444555555666666666666666553  33  2334555555666666666666666654322 44444444555666


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          317 MGWLGDARKMWFEMIHKGLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~~~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      .++.+.|..+.+++.+.  .|+. .+|..|..+|...|+++.|...++.+
T Consensus       247 k~~~~lAL~iAk~av~l--sP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~  294 (395)
T PF09295_consen  247 KKKYELALEIAKKAVEL--SPSEFETWYQLAECYIQLGDFENALLALNSC  294 (395)
T ss_pred             cCCHHHHHHHHHHHHHh--CchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence            66666666666666664  3443 36666666666666666666666544

They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.99  E-value=0.009  Score=59.39  Aligned_cols=150  Identities=12%  Similarity=0.125  Sum_probs=105.2

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCC----CHHhHHHHHHHHH
Q 045814           74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSP----NPNSLELYIQCLC  149 (427)
Q Consensus        74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~li~~~~  149 (427)
                      .+++++++...+...|.+.|+.+.+-  -..+......+.+.|++...++.|..+.-..+...    -...|-...-.|.
T Consensus       496 ~~LG~iYrd~~Dm~RA~kCf~KAFeL--Datdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyL  573 (1238)
T KOG1127|consen  496 AFLGQIYRDSDDMKRAKKCFDKAFEL--DATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYL  573 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcC--CchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhcccccc
Confidence            45677777767888888888887532  12356788888999999999999998853322111    1223334455677


Q ss_pred             hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch--------hHHHHHhcCChhHHHHH
Q 045814          150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY--------LIQAFCNDGKVSEGYEL  221 (427)
Q Consensus       150 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--------l~~~~~~~g~~~~a~~~  221 (427)
                      +.+++..|..-|+...+..+. |...|..++.+|.+.|++..|.++|.++...+.        ..-..|..|.+.+|+..
T Consensus       574 ea~n~h~aV~~fQsALR~dPk-D~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~  652 (1238)
T KOG1127|consen  574 EAHNLHGAVCEFQSALRTDPK-DYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDA  652 (1238)
T ss_pred             CccchhhHHHHHHHHhcCCch-hHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence            788888888888888877665 778888888888888888888888877665532        23345567777777777


Q ss_pred             HHHHH
Q 045814          222 LRQVL  226 (427)
Q Consensus       222 ~~~~~  226 (427)
                      +....
T Consensus       653 l~~ii  657 (1238)
T KOG1127|consen  653 LGLII  657 (1238)
T ss_pred             HHHHH
Confidence            66654

>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function

Probab=97.97  E-value=0.00056  Score=53.95  Aligned_cols=127  Identities=7%  Similarity=0.056  Sum_probs=84.4

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT--VMYTTVI  311 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li  311 (427)
                      .|..++..+ ..++...+...++.+........  ....-.+...+...|++++|...|+........|+.  .....+.
T Consensus        14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA   92 (145)
T PF09976_consen   14 LYEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA   92 (145)
T ss_pred             HHHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence            455555555 37778888888888877643211  123334456777888888888888888876533322  2344466


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ..+...|++++|+..++......  .....+......|.+.|+.++|...|+..
T Consensus        93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A  144 (145)
T PF09976_consen   93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQKA  144 (145)
T ss_pred             HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence            77778888888888886643332  23445666777888888888888888753

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.92  E-value=0.0096  Score=49.89  Aligned_cols=84  Identities=21%  Similarity=0.191  Sum_probs=41.8

Q ss_pred             cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814          282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  361 (427)
                      .|.+++|+++++.+.+.+.. |.++|-.-+...-..|+.-+|++-+.+..+. ...|...|.-+-..|...|++++|.-.
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            45555555555555554422 3444444444444444444555555544443 233555555555555555555555555


Q ss_pred             HHHHHH
Q 045814          362 HKEMLD  367 (427)
Q Consensus       362 ~~~m~~  367 (427)
                      ++++.-
T Consensus       177 lEE~ll  182 (289)
T KOG3060|consen  177 LEELLL  182 (289)
T ss_pred             HHHHHH
Confidence            555544

>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat

Probab=97.89  E-value=1.9e-05  Score=43.53  Aligned_cols=24  Identities=42%  Similarity=0.816  Sum_probs=8.8

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHH
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEM  330 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m  330 (427)
                      |++++++|++.|++++|.+++++|
T Consensus         3 y~~li~~~~~~~~~~~a~~~~~~M   26 (31)
T PF01535_consen    3 YNSLISGYCKMGQFEEALEVFDEM   26 (31)
T ss_pred             HHHHHHHHHccchHHHHHHHHHHH
Confidence            333333333333333333333333

Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.

>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]

Probab=97.87  E-value=0.0053  Score=56.76  Aligned_cols=215  Identities=15%  Similarity=0.078  Sum_probs=145.5

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch---------------h
Q 045814          141 LELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY---------------L  205 (427)
Q Consensus       141 ~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------l  205 (427)
                      ...+..+.-+..++..|++-+....+..  -+..-++..-.+|...|.+.+....-+..++.|.               +
T Consensus       227 ek~lgnaaykkk~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~  304 (539)
T KOG0548|consen  227 EKELGNAAYKKKDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARL  304 (539)
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHh
Confidence            4456777778889999999999888765  3566667777788888888877777666665542               3


Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ..+|.+.++++.+...|.+.......|+         ...+....+++....+...-.+... ..-.-.-.+.+.+.|++
T Consensus       305 g~a~~k~~~~~~ai~~~~kaLte~Rt~~---------~ls~lk~~Ek~~k~~e~~a~~~pe~-A~e~r~kGne~Fk~gdy  374 (539)
T KOG0548|consen  305 GNAYTKREDYEGAIKYYQKALTEHRTPD---------LLSKLKEAEKALKEAERKAYINPEK-AEEEREKGNEAFKKGDY  374 (539)
T ss_pred             hhhhhhHHhHHHHHHHHHHHhhhhcCHH---------HHHHHHHHHHHHHHHHHHHhhChhH-HHHHHHHHHHHHhccCH
Confidence            4467777888888888887665433332         1222333445555444443332221 11122225677889999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ..|.+.|.++.+.... |...|+....+|.+.|.+..|+.=.+...+.. ++....|.-=..++....++++|.+.|++.
T Consensus       375 ~~Av~~YteAIkr~P~-Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~ea  452 (539)
T KOG0548|consen  375 PEAVKHYTEAIKRDPE-DARLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEA  452 (539)
T ss_pred             HHHHHHHHHHHhcCCc-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999888744 78899999999999999999988877777762 222333443344445556788888888888


Q ss_pred             HHCC
Q 045814          366 LDKG  369 (427)
Q Consensus       366 ~~~~  369 (427)
                      .+.+
T Consensus       453 le~d  456 (539)
T KOG0548|consen  453 LELD  456 (539)
T ss_pred             HhcC
Confidence            8763

>KOG3060 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.86  E-value=0.012  Score=49.35  Aligned_cols=119  Identities=13%  Similarity=0.099  Sum_probs=61.7

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814          212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                      .|++++|.++++.+...... |..++---+-..-..|+..+|++-+....+. +..|...|.-+-..|...|++++|.-.
T Consensus        99 ~~~~~~A~e~y~~lL~ddpt-~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~D~EAW~eLaeiY~~~~~f~kA~fC  176 (289)
T KOG3060|consen   99 TGNYKEAIEYYESLLEDDPT-DTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMNDQEAWHELAEIYLSEGDFEKAAFC  176 (289)
T ss_pred             hhchhhHHHHHHHHhccCcc-hhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcCcHHHHHHHHHHHHhHhHHHHHHHH
Confidence            45556666666666555432 4555554444444555555555555555544 344556666666666666666666666


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHc---cCCHHHHHHHHHHHHHc
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGLCK---MGWLGDARKMWFEMIHK  333 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~~~---~g~~~~a~~~~~~m~~~  333 (427)
                      ++++.-..+. +...+..+...+.-   ..+.+.+.++|.+..+.
T Consensus       177 lEE~ll~~P~-n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl  220 (289)
T KOG3060|consen  177 LEELLLIQPF-NPLYFQRLAEVLYTQGGAENLELARKYYERALKL  220 (289)
T ss_pred             HHHHHHcCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHh
Confidence            6666544221 33333333333222   22345555666655554

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.86  E-value=0.00031  Score=62.06  Aligned_cols=130  Identities=9%  Similarity=0.091  Sum_probs=71.5

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      +|..+++...+.+..+.|..+|.+..+.+.. +...|-..... |...++.+.|..+|+...+. ...+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~-~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDKRC-TYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS--THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            4566666666666666666666666643221 22233332222 22234555566676666654 333555566666666


Q ss_pred             hhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ...|+.+.|+.+|++.... +.++   ...|...++.-.+.|+.+.+.++.+++.+.
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~  136 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL  136 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            6666777777777666654 2222   236666666666667777777776666653

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]

Probab=97.81  E-value=0.0031  Score=62.43  Aligned_cols=55  Identities=11%  Similarity=0.048  Sum_probs=28.7

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHH
Q 045814          140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKL  195 (427)
Q Consensus       140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~  195 (427)
                      .|..|...|+...+...|.+.|++..+.... +...+..+.+.|++..++++|..+
T Consensus       494 af~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~~~we~a~~I  548 (1238)
T KOG1127|consen  494 AFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEESTWEEAFEI  548 (1238)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhccccHHHHHHH
Confidence            4555555555555555555555555544333 444455555555555555555554

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.76  E-value=0.028  Score=50.40  Aligned_cols=109  Identities=17%  Similarity=0.192  Sum_probs=85.7

Q ss_pred             HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045814          269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG  348 (427)
Q Consensus       269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  348 (427)
                      ..+.+..|.-+...|+...|.++-.+..    .|+..-|...+.+++..+++++...+-..   .   -++.-|..++.+
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~Fk----v~dkrfw~lki~aLa~~~~w~eL~~fa~s---k---KsPIGyepFv~~  246 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEFK----VPDKRFWWLKIKALAENKDWDELEKFAKS---K---KSPIGYEPFVEA  246 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHcC----CcHHHHHHHHHHHHHhcCCHHHHHHHHhC---C---CCCCChHHHHHH
Confidence            3466666777888899888888866653    37999999999999999999988876542   1   134678999999


Q ss_pred             HhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814          349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF  397 (427)
Q Consensus       349 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  397 (427)
                      |.+.|+..+|..+...+          .+..-+..|.+.|++.+|.+.-
T Consensus       247 ~~~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A  285 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEA  285 (319)
T ss_pred             HHHCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHH
Confidence            99999999999888772          2356678888999999887653

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.75  E-value=0.00075  Score=55.22  Aligned_cols=104  Identities=18%  Similarity=0.199  Sum_probs=52.5

Q ss_pred             CCHhhHHHHHHHHHh-----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814          267 PDNFTYEEVINGLCK-----SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT  341 (427)
Q Consensus       267 ~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  341 (427)
                      .|..+|..+++.|.+     .|..+=....+..|.+.|+.-|..+|+.|+..+=+ |.+-               |.. .
T Consensus        45 k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv---------------p~n-~  107 (228)
T PF06239_consen   45 KDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV---------------PRN-F  107 (228)
T ss_pred             ccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc---------------ccc-H
Confidence            355566666666553     24555555556666666666666666666665543 2210               000 0


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR  389 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  389 (427)
                      +-++...|-  .+-+-|.+++++|...|+-||..++..+++.+.+.+.
T Consensus       108 fQ~~F~hyp--~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~  153 (228)
T PF06239_consen  108 FQAEFMHYP--RQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH  153 (228)
T ss_pred             HHHHhccCc--HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence            000000011  1234566666666666666666666666666644443

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.71  E-value=0.0024  Score=52.01  Aligned_cols=130  Identities=12%  Similarity=0.042  Sum_probs=72.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD--TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH  347 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  347 (427)
                      ..+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+++...... -+...+..+..
T Consensus        36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~  114 (172)
T PRK02603         36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNP-KQPSALNNIAV  114 (172)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            3556666666677777777777777765433222  24566666667777777777777777666421 13444555555


Q ss_pred             HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                      +|...|+...+..-++...                     ..+++|.+++++....    +...|..++..+...|+.
T Consensus       115 ~~~~~g~~~~a~~~~~~A~---------------------~~~~~A~~~~~~a~~~----~p~~~~~~~~~~~~~~~~  167 (172)
T PRK02603        115 IYHKRGEKAEEAGDQDEAE---------------------ALFDKAAEYWKQAIRL----APNNYIEAQNWLKTTGRS  167 (172)
T ss_pred             HHHHcCChHhHhhCHHHHH---------------------HHHHHHHHHHHHHHhh----CchhHHHHHHHHHhcCcc
Confidence            6666555444333222211                     1145566666666553    333366666666666654

>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses

Probab=97.69  E-value=0.0011  Score=54.21  Aligned_cols=117  Identities=15%  Similarity=0.149  Sum_probs=82.5

Q ss_pred             CCCHHHHHHHHHHHHc-----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh
Q 045814          231 VPENTAFNKLISRFCE-----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV  305 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~  305 (427)
                      ..+..+|..++..|.+     .|..+=....+..|.+.|+.-|..+|+.|++.+=+ |.+- -..+|+.+-         
T Consensus        44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F---------  112 (228)
T PF06239_consen   44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF---------  112 (228)
T ss_pred             cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh---------
Confidence            4588999999999976     46788888899999999999999999999998765 3332 111111111         


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC-HHHHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN-LEEAKRLHKEML  366 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~  366 (427)
                            --  .-.+-+-|++++++|...|+-||..|+..+++.+.+.+. +.+..++.--|.
T Consensus       113 ------~h--yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~p~~K~~rmmYWmp  166 (228)
T PF06239_consen  113 ------MH--YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSHPMKKYRRMMYWMP  166 (228)
T ss_pred             ------cc--CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence                  11  123356788888888888888888888888888877764 334444444333

ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.67  E-value=0.0028  Score=47.82  Aligned_cols=97  Identities=13%  Similarity=0.063  Sum_probs=50.3

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC--CChhhHHHHHH
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG--ETTVTYNTLIA  382 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~  382 (427)
                      +..+...+.+.|++++|...++.+......  .....+..+..++.+.|+++.|...++.+......  .....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            344445555556666666666665543211  01233444555566666666666666665543211  11334555555


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 045814          383 GLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       383 ~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ++...|+.++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            566666666666666666554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.66  E-value=0.0012  Score=47.09  Aligned_cols=93  Identities=17%  Similarity=0.227  Sum_probs=50.6

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      ..+...+...|++++|...++++.+... .+...+..+...+...|++++|.+.++...+.. +.+...+..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDP-DNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHH
Confidence            3344455555666666666666555421 122444555555556666666666666655542 12334555555666666


Q ss_pred             CCHHHHHHHHHHHHH
Q 045814          388 GRTDEAYHLFEEMAQ  402 (427)
Q Consensus       388 g~~~~A~~~~~~m~~  402 (427)
                      |++++|...+....+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            666666666655543

>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF

Probab=97.65  E-value=0.0023  Score=48.27  Aligned_cols=97  Identities=12%  Similarity=0.069  Sum_probs=45.8

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIH  347 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~  347 (427)
                      +..+...+.+.|++++|...|..+.+....  .....+..+..++.+.|++++|...++.+......  .....+..+..
T Consensus         5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~   84 (119)
T TIGR02795         5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM   84 (119)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence            334444445555555555555555443211  01223344555555555555555555555543211  11233444445


Q ss_pred             HHhhcCCHHHHHHHHHHHHHC
Q 045814          348 GYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ++.+.|+.++|.+.++++.+.
T Consensus        85 ~~~~~~~~~~A~~~~~~~~~~  105 (119)
T TIGR02795        85 SLQELGDKEKAKATLQQVIKR  105 (119)
T ss_pred             HHHHhCChHHHHHHHHHHHHH
Confidence            555555555555555555554

Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.

>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C

Probab=97.63  E-value=0.0013  Score=46.93  Aligned_cols=93  Identities=17%  Similarity=0.146  Sum_probs=48.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814          273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI  352 (427)
Q Consensus       273 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  352 (427)
                      ..+...+...|++++|...++++.+.... +...+..+...+...|++++|...++....... .+..++..+...+...
T Consensus         4 ~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~~~~~~~   81 (100)
T cd00189           4 LNLGNLYYKLGDYDEALEYYEKALELDPD-NADAYYNLAAAYYKLGKYEEALEDYEKALELDP-DNAKAYYNLGLAYYKL   81 (100)
T ss_pred             HHHHHHHHHHhcHHHHHHHHHHHHhcCCc-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-cchhHHHHHHHHHHHH
Confidence            33444455555666666666555544221 224444555555555666666666665555431 1234555555556666


Q ss_pred             CCHHHHHHHHHHHHH
Q 045814          353 DNLEEAKRLHKEMLD  367 (427)
Q Consensus       353 g~~~~a~~~~~~m~~  367 (427)
                      |+++.|...+....+
T Consensus        82 ~~~~~a~~~~~~~~~   96 (100)
T cd00189          82 GKYEEALEAYEKALE   96 (100)
T ss_pred             HhHHHHHHHHHHHHc
Confidence            666666666655543

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.61  E-value=0.00016  Score=50.96  Aligned_cols=81  Identities=21%  Similarity=0.205  Sum_probs=39.6

Q ss_pred             cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 045814          317 MGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH  395 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~  395 (427)
                      .|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|++
T Consensus         2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~   79 (84)
T PF12895_consen    2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIK   79 (84)
T ss_dssp             TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHH
T ss_pred             CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHH
Confidence            35566666666666555321 1233333355566666666666666655 211111 22233333555666666666666


Q ss_pred             HHHH
Q 045814          396 LFEE  399 (427)
Q Consensus       396 ~~~~  399 (427)
                      +|++
T Consensus        80 ~l~~   83 (84)
T PF12895_consen   80 ALEK   83 (84)
T ss_dssp             HHHH
T ss_pred             HHhc
Confidence            6554

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.60  E-value=0.0024  Score=51.85  Aligned_cols=93  Identities=13%  Similarity=0.080  Sum_probs=47.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG  383 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  383 (427)
                      .|..+...+...|++++|...+++.......+  ...++..+...|...|++++|...++...... +....++..+...
T Consensus        37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~i  115 (168)
T CHL00033         37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAVI  115 (168)
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHH
Confidence            44444555555566666666666655442221  12345555556666666666666666655431 1123334444444


Q ss_pred             HH-------hcCCHHHHHHHHHH
Q 045814          384 LC-------LHGRTDEAYHLFEE  399 (427)
Q Consensus       384 ~~-------~~g~~~~A~~~~~~  399 (427)
                      +.       ..|++++|...+++
T Consensus       116 ~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        116 CHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHhhHHHHHcccHHHHHHHHHH
Confidence            44       66666655554443

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.60  E-value=0.016  Score=51.35  Aligned_cols=130  Identities=15%  Similarity=0.199  Sum_probs=57.7

Q ss_pred             HHHHHhcCChhHHHHHHHHHHhcCCC-----cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814          145 IQCLCESGLIEEAFCAFSKLKEMGVF-----GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY  219 (427)
Q Consensus       145 i~~~~~~~~~~~A~~~~~~m~~~g~~-----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~  219 (427)
                      ...|-..|++++|.+.|.+.......     .-...|.....+|.+. ++++|...+++..      ..|...|++..|-
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~------~~y~~~G~~~~aA  114 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAI------EIYREAGRFSQAA  114 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHH------HHHHHCT-HHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHH------HHHHhcCcHHHHH
Confidence            45566667777777776655432111     0112233333333332 5555555555443      2344555555443


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHhhC----CCCCC--HhhHHHHHHHHHhcCChHHHHHHH
Q 045814          220 ELLRQVLEDGLVPENTAFNKLISRFCEK-KNFGRVSELLHTMVAR----NRAPD--NFTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~----~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                      ..+.               .+...|... |++++|.+.|++..+.    + .+.  ...+..+...+.+.|++++|..+|
T Consensus       115 ~~~~---------------~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~  178 (282)
T PF14938_consen  115 KCLK---------------ELAEIYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIY  178 (282)
T ss_dssp             HHHH---------------HHHHHHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHH
T ss_pred             HHHH---------------HHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence            3332               233344444 5666666666544332    1 110  123344445555556666666666


Q ss_pred             HHHHh
Q 045814          293 NDLKE  297 (427)
Q Consensus       293 ~~m~~  297 (427)
                      +++..
T Consensus       179 e~~~~  183 (282)
T PF14938_consen  179 EEVAK  183 (282)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            55543

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.58  E-value=0.041  Score=47.43  Aligned_cols=173  Identities=16%  Similarity=0.137  Sum_probs=96.4

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh--cC
Q 045814          209 FCNDGKVSEGYELLRQVLEDGLVPENTA---FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK--SR  283 (427)
Q Consensus       209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~  283 (427)
                      +...|++++|.+.|+.+...-+.+ ...   .-.+..++.+.+++++|...+++..+..+.-...-|...+.+.+.  .+
T Consensus        42 ~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~  120 (243)
T PRK10866         42 KLQDGNWKQAITQLEALDNRYPFG-PYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALD  120 (243)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcc
Confidence            345666777777777766643332 222   233456667777777777777777766443222333333333321  00


Q ss_pred             ---------------Ch---HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814          284 ---------------KR---LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM  345 (427)
Q Consensus       284 ---------------~~---~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  345 (427)
                                     +.   .+|...|+.+.+               -|=...-..+|...+..+... +  -..- -.+
T Consensus       121 ~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~---------------~yP~S~ya~~A~~rl~~l~~~-l--a~~e-~~i  181 (243)
T PRK10866        121 DSALQGFFGVDRSDRDPQHARAAFRDFSKLVR---------------GYPNSQYTTDATKRLVFLKDR-L--AKYE-LSV  181 (243)
T ss_pred             hhhhhhccCCCccccCHHHHHHHHHHHHHHHH---------------HCcCChhHHHHHHHHHHHHHH-H--HHHH-HHH
Confidence                           11   123333333332               222223344444444333322 0  0011 245


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      .+.|.+.|.+..|..-++.+.+.  +.+........++.+|...|..++|.++...+.
T Consensus       182 a~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~  239 (243)
T PRK10866        182 AEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA  239 (243)
T ss_pred             HHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence            66788899999999999998876  333345667778889999999999988776654

>PRK02603 photosystem I assembly protein Ycf3; Provisional

Probab=97.58  E-value=0.0053  Score=49.97  Aligned_cols=95  Identities=7%  Similarity=-0.030  Sum_probs=73.8

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV  310 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  310 (427)
                      ....+..+...+...|++++|...|++..+....+.  ...+..+...+.+.|++++|...+.+..+.... +...+..+
T Consensus        34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  112 (172)
T PRK02603         34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPK-QPSALNNI  112 (172)
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHH
Confidence            445678888888999999999999999987654332  367888899999999999999999999876433 56677777


Q ss_pred             HHHHHccCCHHHHHHHHH
Q 045814          311 IHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~  328 (427)
                      ...+...|+...+..-++
T Consensus       113 g~~~~~~g~~~~a~~~~~  130 (172)
T PRK02603        113 AVIYHKRGEKAEEAGDQD  130 (172)
T ss_pred             HHHHHHcCChHhHhhCHH
Confidence            788888887655554333

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.53  E-value=0.004  Score=57.16  Aligned_cols=91  Identities=10%  Similarity=0.013  Sum_probs=71.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH
Q 045814          276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL  355 (427)
Q Consensus       276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  355 (427)
                      ...+...|++++|+..|+++.+.... +...|..+..+|.+.|++++|+..++++..... .+...|..+..+|...|++
T Consensus         9 a~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~   86 (356)
T PLN03088          9 AKEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEY   86 (356)
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCH
Confidence            45566788888888888888877544 666777888888888888888888888887642 2566777788888888888


Q ss_pred             HHHHHHHHHHHHC
Q 045814          356 EEAKRLHKEMLDK  368 (427)
Q Consensus       356 ~~a~~~~~~m~~~  368 (427)
                      ++|...|+...+.
T Consensus        87 ~eA~~~~~~al~l   99 (356)
T PLN03088         87 QTAKAALEKGASL   99 (356)
T ss_pred             HHHHHHHHHHHHh
Confidence            8888888888875

>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A

Probab=97.51  E-value=0.026  Score=50.09  Aligned_cols=197  Identities=10%  Similarity=0.112  Sum_probs=108.1

Q ss_pred             HHHHHHcCChHHHHHHHHhc-------CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 045814          113 FDSLVEARAFKVAMDFLDST-------GFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI  184 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~~-------~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  184 (427)
                      ...|-..|++++|.+.|.+.       +...+ ...|.....+|.+. ++++|.+.               |...+..|.
T Consensus        42 a~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~---------------~~~A~~~y~  105 (282)
T PF14938_consen   42 ANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIEC---------------YEKAIEIYR  105 (282)
T ss_dssp             HHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHH---------------HHHHHHHHH
T ss_pred             HHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHH---------------HHHHHHHHH
Confidence            45566777777777776642       10000 11222223333222 44444444               444556677


Q ss_pred             HcCChhHHHHHHHHHHhcchhHHHHHhc-CChhHHHHHHHHHHH----CCCC-CCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          185 KIDRTDLVWKLYHDLIESGYLIQAFCND-GKVSEGYELLRQVLE----DGLV-PENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~----~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      ..|++..|-+.+..+      ...|-.. |++++|++.|++..+    .+.. .-...+..+...+.+.|++++|.++|+
T Consensus       106 ~~G~~~~aA~~~~~l------A~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e  179 (282)
T PF14938_consen  106 EAGRFSQAAKCLKEL------AEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYE  179 (282)
T ss_dssp             HCT-HHHHHHHHHHH------HHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             hcCcHHHHHHHHHHH------HHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            778877777766654      3456666 788888888877654    2311 123456777888999999999999999


Q ss_pred             HHhhCCCCC-----CHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC--CCCC--hhhHHHHHHHHHcc--CCHHHHHHH
Q 045814          259 TMVARNRAP-----DNF-TYEEVINGLCKSRKRLEAYRVFNDLKERG--YVPD--TVMYTTVIHGLCKM--GWLGDARKM  326 (427)
Q Consensus       259 ~m~~~~~~~-----~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--~~p~--~~~~~~li~~~~~~--g~~~~a~~~  326 (427)
                      +........     +.. .|-..+-.+...||+..|.+.|++.....  +..+  ......||.+|-..  ..++.+..-
T Consensus       180 ~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~  259 (282)
T PF14938_consen  180 EVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAE  259 (282)
T ss_dssp             HHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHH
T ss_pred             HHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence            887754322     221 22233345566789999999999886542  2211  23455566666432  224455555


Q ss_pred             HHHHH
Q 045814          327 WFEMI  331 (427)
Q Consensus       327 ~~~m~  331 (427)
                      |+.+.
T Consensus       260 ~d~~~  264 (282)
T PF14938_consen  260 YDSIS  264 (282)
T ss_dssp             HTTSS
T ss_pred             HcccC
Confidence            55443

>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A

Probab=97.50  E-value=0.00018  Score=50.72  Aligned_cols=47  Identities=13%  Similarity=0.164  Sum_probs=19.2

Q ss_pred             CChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHH
Q 045814          283 RKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFE  329 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~  329 (427)
                      |+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++
T Consensus         3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~   50 (84)
T PF12895_consen    3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK   50 (84)
T ss_dssp             T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC
T ss_pred             ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4444444444444443221 1222223344444444444444444444

>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins

Probab=97.47  E-value=0.0037  Score=55.29  Aligned_cols=129  Identities=11%  Similarity=0.158  Sum_probs=63.6

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh-cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK-SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL  314 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  314 (427)
                      +|..++...-+.+..+.|..+|.+..+.+ ..+..+|......-.. .++.+.|.++|+...+. +..+...|...+..+
T Consensus         3 v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l   80 (280)
T PF05843_consen    3 VWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL   80 (280)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence            45555555555555666666666655332 1122233322222122 34444466666665544 222445555555666


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      ...|+.+.|..+|++.... +.++.   ..|...+..=.+.|+++.+..+.+++.+
T Consensus        81 ~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~  135 (280)
T PF05843_consen   81 IKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEE  135 (280)
T ss_dssp             HHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHH
T ss_pred             HHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            6666666666666665544 22221   2556666655566666666666655554

The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.

>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex

Probab=97.45  E-value=0.077  Score=47.62  Aligned_cols=86  Identities=17%  Similarity=0.265  Sum_probs=70.6

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG  383 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  383 (427)
                      ..+.+..|.-+...|+...|.++-.+.   + .|+..-|...+.+++..++|++-.++...      +-++..|...+.+
T Consensus       177 ~~Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~  246 (319)
T PF04840_consen  177 GLSLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEA  246 (319)
T ss_pred             cCCHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHH
Confidence            346666778888899998888886654   3 37888999999999999999988876543      2267899999999


Q ss_pred             HHhcCCHHHHHHHHHH
Q 045814          384 LCLHGRTDEAYHLFEE  399 (427)
Q Consensus       384 ~~~~g~~~~A~~~~~~  399 (427)
                      |.+.|+..+|..+...
T Consensus       247 ~~~~~~~~eA~~yI~k  262 (319)
T PF04840_consen  247 CLKYGNKKEASKYIPK  262 (319)
T ss_pred             HHHCCCHHHHHHHHHh
Confidence            9999999999999887

Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm

>CHL00033 ycf3 photosystem I assembly protein Ycf3

Probab=97.44  E-value=0.004  Score=50.49  Aligned_cols=94  Identities=14%  Similarity=0.044  Sum_probs=56.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH  347 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  347 (427)
                      ..|..+...+...|++++|...|++.......+  ...+|..+...+...|+.++|+..+++..... +....++..+..
T Consensus        36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~-~~~~~~~~~la~  114 (168)
T CHL00033         36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERN-PFLPQALNNMAV  114 (168)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHH
Confidence            455566666667777777777777776543222  12366667777777777777777777776652 122344555555


Q ss_pred             HHh-------hcCCHHHHHHHHHH
Q 045814          348 GYC-------RIDNLEEAKRLHKE  364 (427)
Q Consensus       348 ~~~-------~~g~~~~a~~~~~~  364 (427)
                      .+.       ..|+++.|...+++
T Consensus       115 i~~~~~~~~~~~g~~~~A~~~~~~  138 (168)
T CHL00033        115 ICHYRGEQAIEQGDSEIAEAWFDQ  138 (168)
T ss_pred             HHHHhhHHHHHcccHHHHHHHHHH
Confidence            555       56666655544443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=97.42  E-value=0.038  Score=52.98  Aligned_cols=213  Identities=18%  Similarity=0.185  Sum_probs=125.5

Q ss_pred             hHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc-CCCcCHhhHHHHHH----------HHHHcCChh
Q 045814          122 FKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM-GVFGSIKTWNSALL----------GCIKIDRTD  190 (427)
Q Consensus       122 ~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~----------~~~~~~~~~  190 (427)
                      +++|.++.+.   .|.+..|..|.......-.++.|+..|-+.... |++    ....|-.          .-+--|+++
T Consensus       679 ledA~qfiEd---nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik----~vkrl~~i~s~~~q~aei~~~~g~fe  751 (1189)
T KOG2041|consen  679 LEDAIQFIED---NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIK----LVKRLRTIHSKEQQRAEISAFYGEFE  751 (1189)
T ss_pred             hHHHHHHHhc---CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchh----HHHHhhhhhhHHHHhHhHhhhhcchh
Confidence            4444444433   688899999988888888888888888665432 332    1111111          112357899


Q ss_pred             HHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH
Q 045814          191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG-LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN  269 (427)
Q Consensus       191 ~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  269 (427)
                      +|+++|-++-+++..+..+.+.|++-.+.++++.--... -.--...++.+...+.....|++|.+.|..-..       
T Consensus       752 eaek~yld~drrDLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~-------  824 (1189)
T KOG2041|consen  752 EAEKLYLDADRRDLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGD-------  824 (1189)
T ss_pred             HhhhhhhccchhhhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-------
Confidence            999999999999999999999999999888776421100 001134677777777777778887777754211       


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                        -...+.++.+..++++.+.+-..+.+     |....-.+..++.+.|.-++|.+.+-+-   + .|     ...+..|
T Consensus       825 --~e~~~ecly~le~f~~LE~la~~Lpe-----~s~llp~~a~mf~svGMC~qAV~a~Lr~---s-~p-----kaAv~tC  888 (1189)
T KOG2041|consen  825 --TENQIECLYRLELFGELEVLARTLPE-----DSELLPVMADMFTSVGMCDQAVEAYLRR---S-LP-----KAAVHTC  888 (1189)
T ss_pred             --hHhHHHHHHHHHhhhhHHHHHHhcCc-----ccchHHHHHHHHHhhchHHHHHHHHHhc---c-Cc-----HHHHHHH
Confidence              12234455554555554444443332     3334455556666666666665544321   1 11     1223445


Q ss_pred             hhcCCHHHHHHHHHH
Q 045814          350 CRIDNLEEAKRLHKE  364 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~  364 (427)
                      ....+|.+|.++-+.
T Consensus       889 v~LnQW~~avelaq~  903 (1189)
T KOG2041|consen  889 VELNQWGEAVELAQR  903 (1189)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            555555555554443

>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional

Probab=97.41  E-value=0.005  Score=56.52  Aligned_cols=91  Identities=9%  Similarity=-0.016  Sum_probs=63.4

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH
Q 045814          207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL  286 (427)
Q Consensus       207 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  286 (427)
                      ..+...|++++|++.|++.+..... +...|..+..+|.+.|++++|+..+++.+.... .+...|..+..+|...|+++
T Consensus        10 ~~a~~~~~~~~Ai~~~~~Al~~~P~-~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P-~~~~a~~~lg~~~~~lg~~~   87 (356)
T PLN03088         10 KEAFVDDDFALAVDLYTQAIDLDPN-NAELYADRAQANIKLGNFTEAVADANKAIELDP-SLAKAYLRKGTACMKLEEYQ   87 (356)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCCHH
Confidence            4455677777777777777765543 566677777777777777777777777776642 24556667777777777777


Q ss_pred             HHHHHHHHHHhCC
Q 045814          287 EAYRVFNDLKERG  299 (427)
Q Consensus       287 ~a~~~~~~m~~~~  299 (427)
                      +|...|++..+..
T Consensus        88 eA~~~~~~al~l~  100 (356)
T PLN03088         88 TAKAALEKGASLA  100 (356)
T ss_pred             HHHHHHHHHHHhC
Confidence            7777777776653

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.40  E-value=0.0048  Score=48.19  Aligned_cols=91  Identities=13%  Similarity=-0.012  Sum_probs=52.2

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN  354 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  354 (427)
                      +...+...|++++|.++|+-+...... +..-|..|..++-..|++++|+..|......++ -|...+-.+..++...|+
T Consensus        41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~  118 (157)
T PRK15363         41 YAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDN  118 (157)
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCC
Confidence            333445566666666666666554433 444455555555566666666666666665543 245555556666666666


Q ss_pred             HHHHHHHHHHHHH
Q 045814          355 LEEAKRLHKEMLD  367 (427)
Q Consensus       355 ~~~a~~~~~~m~~  367 (427)
                      .+.|.+.|+..+.
T Consensus       119 ~~~A~~aF~~Ai~  131 (157)
T PRK15363        119 VCYAIKALKAVVR  131 (157)
T ss_pred             HHHHHHHHHHHHH
Confidence            6666666665554

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.38  E-value=0.016  Score=55.81  Aligned_cols=135  Identities=10%  Similarity=-0.063  Sum_probs=71.9

Q ss_pred             CCCHhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--------CCHHHHHHHHHHHHH
Q 045814          266 APDNFTYEEVINGLCKS-----RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--------GWLGDARKMWFEMIH  332 (427)
Q Consensus       266 ~~~~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~  332 (427)
                      ..+...|...+.+....     +....|..+|++..+.... ....|..+..++...        .+...+.+...+...
T Consensus       334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~-~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a  412 (517)
T PRK10153        334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPD-FTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA  412 (517)
T ss_pred             CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence            44556666666553321     2245666666666665322 223333333222211        112233333333222


Q ss_pred             c-CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          333 K-GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       333 ~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      . ....+...|..+.-.....|++++|...+++..+..  |+...|..+...+...|+.++|.+.+++....
T Consensus       413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L  482 (517)
T PRK10153        413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL  482 (517)
T ss_pred             cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            2 122234556555555555677777777777777653  56667777777777777777777777776653

>PRK10866 outer membrane biogenesis protein BamD; Provisional

Probab=97.34  E-value=0.046  Score=47.12  Aligned_cols=187  Identities=14%  Similarity=0.099  Sum_probs=102.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS  216 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~  216 (427)
                      ++..+-.....+.+.|++++|.+.|+.+...-..+ .....+.+                       .++.++.+.++++
T Consensus        31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~yP~s-~~a~~a~l-----------------------~la~ayy~~~~y~   86 (243)
T PRK10866         31 PPSEIYATAQQKLQDGNWKQAITQLEALDNRYPFG-PYSQQVQL-----------------------DLIYAYYKNADLP   86 (243)
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC-hHHHHHHH-----------------------HHHHHHHhcCCHH
Confidence            33333344555567889999999998888753332 22221111                       1344555666666


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--c---------------CC---hhHHHHHHHHHhhCCCCCCHhhHHHHH
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLISRFCE--K---------------KN---FGRVSELLHTMVARNRAPDNFTYEEVI  276 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~---------------~~---~~~a~~~~~~m~~~~~~~~~~~~~~ll  276 (427)
                      +|...+++..+..+......|...+.+.+.  .               .|   ..+|++.|+++++.             
T Consensus        87 ~A~~~~e~fi~~~P~~~~~~~a~Y~~g~~~~~~~~~~~~~~~~~~~~~rD~~~~~~A~~~~~~li~~-------------  153 (243)
T PRK10866         87 LAQAAIDRFIRLNPTHPNIDYVLYMRGLTNMALDDSALQGFFGVDRSDRDPQHARAAFRDFSKLVRG-------------  153 (243)
T ss_pred             HHHHHHHHHHHhCcCCCchHHHHHHHHHhhhhcchhhhhhccCCCccccCHHHHHHHHHHHHHHHHH-------------
Confidence            666666666654433222333333333321  1               11   12344455555444             


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHhhcCC
Q 045814          277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK--GLLPNEYTYNSMIHGYCRIDN  354 (427)
Q Consensus       277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~  354 (427)
                        |-...-..+|...+..+...    =...--.+..-|.+.|.+..|..-++.+.+.  +..........++.+|...|.
T Consensus       154 --yP~S~ya~~A~~rl~~l~~~----la~~e~~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~  227 (243)
T PRK10866        154 --YPNSQYTTDATKRLVFLKDR----LAKYELSVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQL  227 (243)
T ss_pred             --CcCChhHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCC
Confidence              33333344554444443321    0111123556677888888888888888765  223334566677888888888


Q ss_pred             HHHHHHHHHHHH
Q 045814          355 LEEAKRLHKEML  366 (427)
Q Consensus       355 ~~~a~~~~~~m~  366 (427)
                      .++|..+...+.
T Consensus       228 ~~~a~~~~~~l~  239 (243)
T PRK10866        228 NAQADKVAKIIA  239 (243)
T ss_pred             hHHHHHHHHHHh
Confidence            888888776654

>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional

Probab=97.34  E-value=0.018  Score=45.10  Aligned_cols=96  Identities=5%  Similarity=-0.123  Sum_probs=80.9

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      ..-.+...+...|++++|..+|+-+...... +..-|-.|.-+|-..|++++|...|......+. -|+..+-.+..++.
T Consensus        37 ~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~-~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L  114 (157)
T PRK15363         37 TLYRYAMQLMEVKEFAGAARLFQLLTIYDAW-SFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYL  114 (157)
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence            3344555667899999999999999887533 556677788888999999999999999998864 48899999999999


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 045814          386 LHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       386 ~~g~~~~A~~~~~~m~~~  403 (427)
                      ..|+.+.|.+-|+.....
T Consensus       115 ~lG~~~~A~~aF~~Ai~~  132 (157)
T PRK15363        115 ACDNVCYAIKALKAVVRI  132 (157)
T ss_pred             HcCCHHHHHHHHHHHHHH
Confidence            999999999999988775

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.30  E-value=0.022  Score=42.83  Aligned_cols=56  Identities=16%  Similarity=0.181  Sum_probs=27.3

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPN--EYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      .++-..|+.++|+.+|++....|....  ...+-.+...+...|++++|..++++...
T Consensus         9 ~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~   66 (120)
T PF12688_consen    9 WAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE   66 (120)
T ss_pred             HHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            334445555555555555555544332  12333344445555555555555555544

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=97.28  E-value=0.0074  Score=45.81  Aligned_cols=80  Identities=15%  Similarity=0.161  Sum_probs=40.5

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc---------------CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK---------------GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---------------~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      |..++..+|.++++.|+++....+++..-.-               ...|+..+..+++.+|+..|++..|.++.+...+
T Consensus         1 de~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~   80 (126)
T PF12921_consen    1 DEELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSR   80 (126)
T ss_pred             ChHHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHH
Confidence            3456667777777777777777666554211               1224444444444444444444444444444433


Q ss_pred             C-CCCCChhhHHHHHH
Q 045814          368 K-GYGETTVTYNTLIA  382 (427)
Q Consensus       368 ~-~~~p~~~~~~~li~  382 (427)
                      . +++.+..+|..|++
T Consensus        81 ~Y~I~i~~~~W~~Ll~   96 (126)
T PF12921_consen   81 KYPIPIPKEFWRRLLE   96 (126)
T ss_pred             HcCCCCCHHHHHHHHH
Confidence            2 33334444444443

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.28  E-value=0.09  Score=44.53  Aligned_cols=144  Identities=9%  Similarity=0.066  Sum_probs=98.4

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH----
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI----  311 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li----  311 (427)
                      +.+.++..+.-.|.+.-....+++.++...+.+....+.+++.-.+.||.+.|...|++..+..-+.|..+.+.++    
T Consensus       179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~  258 (366)
T KOG2796|consen  179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNS  258 (366)
T ss_pred             HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhh
Confidence            4556677777778888888888888887767777888888888888888888888888876654444555554443    


Q ss_pred             -HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814          312 -HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA  382 (427)
Q Consensus       312 -~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  382 (427)
                       ..|.-.+++..|...+++....+.. |....|.-.-+..-.|+...|.+.++.|...  .|...+-++++-
T Consensus       259 a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~~~  327 (366)
T KOG2796|consen  259 AFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESVLF  327 (366)
T ss_pred             hhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhHHH
Confidence             3344566777788888777766422 4444454444445568888888888888875  344444444433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.25  E-value=0.011  Score=46.52  Aligned_cols=58  Identities=22%  Similarity=0.393  Sum_probs=27.8

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      ...++..+...|++++|..+...+.... +.|...|..+|.+|...|+..+|.++|+.+
T Consensus        65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~  122 (146)
T PF03704_consen   65 LERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERY  122 (146)
T ss_dssp             HHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHH
Confidence            3344444445555555555555555443 224445555555555555555555555544

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.25  E-value=0.0045  Score=53.18  Aligned_cols=101  Identities=10%  Similarity=0.120  Sum_probs=77.5

Q ss_pred             HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814          242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG  321 (427)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  321 (427)
                      .-..+.+++++|+..|.+.++... -|.+-|..-..+|++.|.++.|++-.+........ -..+|..|..+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P-~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDP-TNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCC-CcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            346677889999999998888743 36677778888899999999998888887776332 3458888889999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          322 DARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       322 ~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      +|.+.|++.++.  .|+-.+|-.=+
T Consensus       167 ~A~~aykKaLel--dP~Ne~~K~nL  189 (304)
T KOG0553|consen  167 EAIEAYKKALEL--DPDNESYKSNL  189 (304)
T ss_pred             HHHHHHHhhhcc--CCCcHHHHHHH
Confidence            999998888774  66666654433

>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production

Probab=97.23  E-value=0.0095  Score=46.98  Aligned_cols=72  Identities=24%  Similarity=0.293  Sum_probs=53.5

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-----KGIFRDVITYN  413 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~  413 (427)
                      +...++..+...|++++|.++++.+.... +-|...|..+|.+|...|+..+|.++|+++.+     .|+.|+..+-.
T Consensus        64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~~  140 (146)
T PF03704_consen   64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETRA  140 (146)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHHH
T ss_pred             HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHHH
Confidence            45667777888999999999999998874 34788999999999999999999999988754     39999887654

It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.

>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]

Probab=97.15  E-value=0.32  Score=48.41  Aligned_cols=183  Identities=14%  Similarity=0.070  Sum_probs=111.5

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814           80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~  158 (427)
                      +-+.+....|+.+.+....-.+  .|..|...+-..|.+.++.++|..++++ .+..|+......+..+|.+-+++.+-.
T Consensus        53 l~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQ  130 (932)
T KOG2053|consen   53 LFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQ  130 (932)
T ss_pred             HHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHH
Confidence            4567777888877766643322  2778888888888888999999998887 466788777777888888887776554


Q ss_pred             HHHHHHHhcCCCcCHhhHHHHHHHHHHcC-C---------hhHHHHHHHHHHhcc-h---------hHHHHHhcCChhHH
Q 045814          159 CAFSKLKEMGVFGSIKTWNSALLGCIKID-R---------TDLVWKLYHDLIESG-Y---------LIQAFCNDGKVSEG  218 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~---------~~~a~~~~~~~~~~~-~---------l~~~~~~~g~~~~a  218 (427)
                      ++--+|.+. .+-....+=++++.....- .         ..-|.+.++.+++.+ .         ....+...|++++|
T Consensus       131 kaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~ea  209 (932)
T KOG2053|consen  131 KAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEA  209 (932)
T ss_pred             HHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHH
Confidence            444444332 1223444444444433211 1         123555555555543 1         34445567788888


Q ss_pred             HHHHH-HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC
Q 045814          219 YELLR-QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR  265 (427)
Q Consensus       219 ~~~~~-~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~  265 (427)
                      .+++. ...+.-..-+...-+.-+..+...++|.+..++-.++...|.
T Consensus       210 l~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~~  257 (932)
T KOG2053|consen  210 LEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKGN  257 (932)
T ss_pred             HHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhCC
Confidence            88874 333332222444444556666667777777777777666653

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.15  E-value=0.0018  Score=43.34  Aligned_cols=52  Identities=21%  Similarity=0.274  Sum_probs=25.8

Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..|++++|.++|+.+..... -+...+..+..+|.+.|++++|.++++++...
T Consensus         3 ~~~~~~~A~~~~~~~l~~~p-~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~   54 (68)
T PF14559_consen    3 KQGDYDEAIELLEKALQRNP-DNPEARLLLAQCYLKQGQYDEAEELLERLLKQ   54 (68)
T ss_dssp             HTTHHHHHHHHHHHHHHHTT-TSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred             hccCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            34555555555555554421 14444445555555555555555555555543

...

>KOG0553 consensus TPR repeat-containing protein [General function prediction only]

Probab=97.14  E-value=0.0076  Score=51.80  Aligned_cols=102  Identities=21%  Similarity=0.218  Sum_probs=78.4

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814          277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE  356 (427)
Q Consensus       277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  356 (427)
                      +-+.+.+++.+|+..|.+.++...+ |.+-|..-..+|.+.|.++.|++=.+..+..+.. ...+|..|-.+|...|+++
T Consensus        89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~-yskay~RLG~A~~~~gk~~  166 (304)
T KOG0553|consen   89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPH-YSKAYGRLGLAYLALGKYE  166 (304)
T ss_pred             HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcChH-HHHHHHHHHHHHHccCcHH
Confidence            3466788899999999988887655 7777888888889999988888888887775321 3568888888888899999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814          357 EAKRLHKEMLDKGYGETTVTYNTLIA  382 (427)
Q Consensus       357 ~a~~~~~~m~~~~~~p~~~~~~~li~  382 (427)
                      +|.+.|++.++  +.|+-.+|..=+.
T Consensus       167 ~A~~aykKaLe--ldP~Ne~~K~nL~  190 (304)
T KOG0553|consen  167 EAIEAYKKALE--LDPDNESYKSNLK  190 (304)
T ss_pred             HHHHHHHhhhc--cCCCcHHHHHHHH
Confidence            99988888876  4567666654444

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.12  E-value=0.064  Score=44.95  Aligned_cols=176  Identities=11%  Similarity=0.099  Sum_probs=83.7

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCC--CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLV--PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      .+...|++++|.+.|+.+......  --....-.++.++.+.|++++|...+++..+.-+.....-+...+.+.+.....
T Consensus        14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~~   93 (203)
T PF13525_consen   14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQI   93 (203)
T ss_dssp             HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHhC
Confidence            345667777777777777654221  123344556667777777777777777776653322222222222222211111


Q ss_pred             HHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH  362 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  362 (427)
                      ....     ........   -...+..++.-|=......+|...+..+... +  -. .--.+...|.+.|.+..|..-+
T Consensus        94 ~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~-l--a~-~e~~ia~~Y~~~~~y~aA~~r~  164 (203)
T PF13525_consen   94 PGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR-L--AE-HELYIARFYYKRGKYKAAIIRF  164 (203)
T ss_dssp             HHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH-H--HH-HHHHHHHHHHCTT-HHHHHHHH
T ss_pred             ccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH-H--HH-HHHHHHHHHHHcccHHHHHHHH
Confidence            0000     00000000   0113334444444455555555555444332 0  00 1122456677888888888888


Q ss_pred             HHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHH
Q 045814          363 KEMLDKGYGET----TVTYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       363 ~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~  394 (427)
                      +.+++.  -|+    ....-.++.+|.+.|..+.|.
T Consensus       165 ~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~~~a~  198 (203)
T PF13525_consen  165 QYVIEN--YPDTPAAEEALARLAEAYYKLGLKQAAD  198 (203)
T ss_dssp             HHHHHH--STTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred             HHHHHH--CCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence            888775  123    234566677777777776443

>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A

Probab=97.10  E-value=0.0017  Score=43.50  Aligned_cols=23  Identities=22%  Similarity=0.404  Sum_probs=8.8

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHH
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      .+..+|.+.|++++|.++++.+.
T Consensus        30 ~la~~~~~~g~~~~A~~~l~~~~   52 (68)
T PF14559_consen   30 LLAQCYLKQGQYDEAEELLERLL   52 (68)
T ss_dssp             HHHHHHHHTT-HHHHHHHHHCCH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHH
Confidence            33334444444444444444333

...

>PF12688 TPR_5: Tetratrico peptide repeat

Probab=97.10  E-value=0.031  Score=42.02  Aligned_cols=89  Identities=18%  Similarity=0.135  Sum_probs=45.0

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcC
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLVPE--NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP--DNFTYEEVINGLCKSR  283 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~  283 (427)
                      ++-..|+.++|+.+|++....|...+  ...+-.+.+.+...|++++|..++++........  +......+.-++...|
T Consensus        10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g   89 (120)
T PF12688_consen   10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG   89 (120)
T ss_pred             HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence            34455666666666666666554432  2244445556666666666666666655442110  1111122223445556


Q ss_pred             ChHHHHHHHHHHH
Q 045814          284 KRLEAYRVFNDLK  296 (427)
Q Consensus       284 ~~~~a~~~~~~m~  296 (427)
                      +.++|...+-...
T Consensus        90 r~~eAl~~~l~~l  102 (120)
T PF12688_consen   90 RPKEALEWLLEAL  102 (120)
T ss_pred             CHHHHHHHHHHHH
Confidence            6666666555444

>PRK10153 DNA-binding transcriptional activator CadC; Provisional

Probab=97.08  E-value=0.047  Score=52.59  Aligned_cols=143  Identities=13%  Similarity=0.060  Sum_probs=99.7

Q ss_pred             CCCCCHHHHHHHHHHHHcc-----CChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcC--------ChHHHHHHHHH
Q 045814          229 GLVPENTAFNKLISRFCEK-----KNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSR--------KRLEAYRVFND  294 (427)
Q Consensus       229 ~~~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~--------~~~~a~~~~~~  294 (427)
                      +...+...|...+.+....     ++...|..+|++..+..  |+ ...|..+..++....        +...+.+...+
T Consensus       332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ld--P~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~  409 (517)
T PRK10153        332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSE--PDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDN  409 (517)
T ss_pred             cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHH
Confidence            4456788899888875442     23778999999999884  44 345554444333221        22334444444


Q ss_pred             HHhC-CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 045814          295 LKER-GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET  373 (427)
Q Consensus       295 m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  373 (427)
                      .... ....+...|.++.-.....|++++|...++++...+  |+...|..+...+...|+.++|.+.+++....  .|.
T Consensus       410 a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~--ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~  485 (517)
T PRK10153        410 IVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE--MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPG  485 (517)
T ss_pred             hhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC
Confidence            3332 123355678877777777899999999999999975  68889999999999999999999999998875  344


Q ss_pred             hhhH
Q 045814          374 TVTY  377 (427)
Q Consensus       374 ~~~~  377 (427)
                      ..+|
T Consensus       486 ~pt~  489 (517)
T PRK10153        486 ENTL  489 (517)
T ss_pred             CchH
Confidence            4444

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=97.07  E-value=0.015  Score=52.22  Aligned_cols=133  Identities=13%  Similarity=0.004  Sum_probs=83.7

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHH----HhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCC-CCH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDL----KERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLL-PNE  339 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m----~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~  339 (427)
                      ..|..|.+.|.-.|+++.|+...+.=    .+.|-+. ....+..+..++.-.|+++.|.+.|+.....    |-. ...
T Consensus       196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA  275 (639)
T KOG1130|consen  196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA  275 (639)
T ss_pred             chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence            45666777777778888887665432    2333221 2346677777888888888888887765432    211 122


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ...-+|...|.-..++++|+.++.+=...     +..-....|-+|..+|...|..++|+.+.+.-.+
T Consensus       276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~  343 (639)
T KOG1130|consen  276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR  343 (639)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            34455667777777888888777643321     1112456677888888888888888877765544

>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A

Probab=97.05  E-value=0.075  Score=44.54  Aligned_cols=176  Identities=13%  Similarity=0.111  Sum_probs=103.0

Q ss_pred             HHHHHHHccCChhHHHHHHHHHhhCCCCC--CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814          239 KLISRFCEKKNFGRVSELLHTMVARNRAP--DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK  316 (427)
Q Consensus       239 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  316 (427)
                      .....+...|++.+|.+.|+.+....+..  -....-.+..++.+.|++++|...+++..+.-..-....+...+.+.+.
T Consensus        10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~   89 (203)
T PF13525_consen   10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY   89 (203)
T ss_dssp             HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence            34556677899999999999998764321  2245567788899999999999999998765322122233333333322


Q ss_pred             cCCHHHHHHHHHHHHHcCCC---CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          317 MGWLGDARKMWFEMIHKGLL---PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~~~~~---p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      -.......     .......   --...+..++.-|-...-..+|...+..+.+.    =...--.+...|.+.|.+..|
T Consensus        90 ~~~~~~~~-----~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~~~~~y~aA  160 (203)
T PF13525_consen   90 YKQIPGIL-----RSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYYKRGKYKAA  160 (203)
T ss_dssp             HHHHHHHH------TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHHCTT-HHHH
T ss_pred             HHhCccch-----hcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHcccHHHH
Confidence            11111110     0000000   01124566666677777777777776666543    111122356789999999999


Q ss_pred             HHHHHHHHHCCCCCCH----hHHHHHHHHHHhcCCC
Q 045814          394 YHLFEEMAQKGIFRDV----ITYNTLIQGYCKEGKI  425 (427)
Q Consensus       394 ~~~~~~m~~~g~~p~~----~~~~~li~~~~~~g~~  425 (427)
                      ..-++.+.+.  -|+.    .....++.+|.+.|..
T Consensus       161 ~~r~~~v~~~--yp~t~~~~~al~~l~~~y~~l~~~  194 (203)
T PF13525_consen  161 IIRFQYVIEN--YPDTPAAEEALARLAEAYYKLGLK  194 (203)
T ss_dssp             HHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTT-H
T ss_pred             HHHHHHHHHH--CCCCchHHHHHHHHHHHHHHhCCh
Confidence            9999999986  3333    4567888888887753

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=97.01  E-value=0.27  Score=47.87  Aligned_cols=292  Identities=15%  Similarity=0.083  Sum_probs=160.3

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcC---ChHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChhHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR---AFKVAMDFLDSTGF-SPNPNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~  158 (427)
                      .+.+..|.++..|+....+.  ....|......+.+..   +-+.+..+-++.+. .-...+|..+.+..-..|+++-|.
T Consensus       450 r~~Y~vaIQva~~l~~p~~~--~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~~GR~~LA~  527 (829)
T KOG2280|consen  450 RHLYSVAIQVAKLLNLPESQ--GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQEGRFELAR  527 (829)
T ss_pred             cchhHHHHHHHHHhCCcccc--ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHhcCcHHHHH
Confidence            45677788888887432111  1455555555555542   22334444445333 233445555555555667777777


Q ss_pred             HHHHHHHhcCCC----cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------------------------hh
Q 045814          159 CAFSKLKEMGVF----GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------------------------YL  205 (427)
Q Consensus       159 ~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------------------------~l  205 (427)
                      .+++.=...+..    .+..-+...+.-+.+.|+.+....++-.+...-                             .+
T Consensus       528 kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~~~r~~~~~~l  607 (829)
T KOG2280|consen  528 KLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQFMRHQDRATL  607 (829)
T ss_pred             HHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHHHHHhhchhhh
Confidence            666533222211    122334455555556666655555554444331                             11


Q ss_pred             HHHHHhcCChhHHHHHHHHH-H----HCCCCCCHHHHHHHHHHHHccCChhHHHH----------HHHHHhh-CCCCCCH
Q 045814          206 IQAFCNDGKVSEGYELLRQV-L----EDGLVPENTAFNKLISRFCEKKNFGRVSE----------LLHTMVA-RNRAPDN  269 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~-~----~~~~~~~~~~~~~li~~~~~~~~~~~a~~----------~~~~m~~-~~~~~~~  269 (427)
                      -..|-...+...+-.+..+- .    ..|..|   ......+.+.+.....-..+          +.+.+.. .|.....
T Consensus       608 ~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~---~lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~Le~q~~~~f~d  684 (829)
T KOG2280|consen  608 YDFYNQDDNHQALASFHLQASYAAETIEGRIP---ALKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTLEDQFGGSFVD  684 (829)
T ss_pred             hhhhhcccchhhhhhhhhhhhhhhhhhcccch---hHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhcccccc
Confidence            11222222222211111111 0    012222   23333444444433221111          1112211 2333344


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      .+.+--+.-+...|+..+|.++-.+.+    .||-..|-.-+.+++..+++++.+++-+.+..      +.-|.-++.+|
T Consensus       685 lSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~PFVe~c  754 (829)
T KOG2280|consen  685 LSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYLPFVEAC  754 (829)
T ss_pred             CcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCchhHHHHH
Confidence            456666677778889999988877765    36888999899999999999888777655432      34577788999


Q ss_pred             hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHH
Q 045814          350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFE  398 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~  398 (427)
                      .+.|+.++|.+++-+....         .-...+|.+.|++.+|.++--
T Consensus       755 ~~~~n~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~  794 (829)
T KOG2280|consen  755 LKQGNKDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAA  794 (829)
T ss_pred             HhcccHHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHH
Confidence            9999999999988765332         156778888898888877543

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.98  E-value=0.0043  Score=41.58  Aligned_cols=64  Identities=17%  Similarity=0.150  Sum_probs=45.3

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC-ChhHHHHHHHHHHh
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID-RTDLVWKLYHDLIE  201 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~  201 (427)
                      ++.+|..+...+...|++++|+..|++..+.... +...|..+..++...| ++++|.+.++..++
T Consensus         2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~   66 (69)
T PF13414_consen    2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKALK   66 (69)
T ss_dssp             SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            3556777777777788888888888777776433 5667777777777777 57777777766554

...

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.97  E-value=0.046  Score=52.03  Aligned_cols=210  Identities=9%  Similarity=0.004  Sum_probs=98.5

Q ss_pred             HHHHHHHHhcCChh--HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814          142 ELYIQCLCESGLIE--EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY  219 (427)
Q Consensus       142 ~~li~~~~~~~~~~--~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~  219 (427)
                      +..=.+|.+-.+..  +..--++++++.|-.|+....   ...++-.|.+.+|-++|.+--..+..++.|.....++.|.
T Consensus       602 ~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~enRAlEmyTDlRMFD~aQ  678 (1081)
T KOG1538|consen  602 ETARKAYIRVRDLRYLELISELEERKKRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHENRALEMYTDLRMFDYAQ  678 (1081)
T ss_pred             HHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCchhhHHHHHHHHHHHHHHH
Confidence            33334454444322  233334566677777766433   3345556666666666665444444444444444444443


Q ss_pred             HHHH------------HHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH------HHhhCCC---CCCHhhHHHHHHH
Q 045814          220 ELLR------------QVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH------TMVARNR---APDNFTYEEVING  278 (427)
Q Consensus       220 ~~~~------------~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~------~m~~~~~---~~~~~~~~~ll~~  278 (427)
                      +++.            +-.+  ..-+..-=.+....+..+|+.++|..+.-      .+.+-+.   ..+..+...+...
T Consensus       679 E~~~~g~~~eKKmL~RKRA~--WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~ere~l~~~a~y  756 (1081)
T KOG1538|consen  679 EFLGSGDPKEKKMLIRKRAD--WARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAEREPLLLCATY  756 (1081)
T ss_pred             HHhhcCChHHHHHHHHHHHH--HhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhhhhHHHHHHHH
Confidence            3332            1110  00000011122334445566655555432      1111111   1122334444444


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-----------HHHHHH
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT-----------YNSMIH  347 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-----------~~~li~  347 (427)
                      +.+...+.-|-++|.+|-..         ..+++.....+++++|..+-+...+.  .||++.           |...-+
T Consensus       757 lk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqk  825 (1081)
T KOG1538|consen  757 LKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQK  825 (1081)
T ss_pred             HhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHH
Confidence            44555666677777666432         23556667777777777776665443  333321           222334


Q ss_pred             HHhhcCCHHHHHHHHHHHHH
Q 045814          348 GYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +|-++|+-.+|.++++++..
T Consensus       826 AfhkAGr~~EA~~vLeQLtn  845 (1081)
T KOG1538|consen  826 AFHKAGRQREAVQVLEQLTN  845 (1081)
T ss_pred             HHHHhcchHHHHHHHHHhhh
Confidence            45555555555555555543

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.92  E-value=0.083  Score=45.79  Aligned_cols=99  Identities=12%  Similarity=0.057  Sum_probs=45.4

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHCCCCCChhhHHH
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI---DNLEEAKRLHKEMLDKGYGETTVTYNT  379 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~~  379 (427)
                      |...|-.|..+|...|+.+.|..-|.+..+.. .++...+..+..++...   .+-.++..+|+++...+.. |+.....
T Consensus       155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l  232 (287)
T COG4235         155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL  232 (287)
T ss_pred             CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence            44455555555555555555555555554431 11233333333322211   1234455555555544221 3444444


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          380 LIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      |...+...|++.+|...|+.|.+.
T Consensus       233 LA~~afe~g~~~~A~~~Wq~lL~~  256 (287)
T COG4235         233 LAFAAFEQGDYAEAAAAWQMLLDL  256 (287)
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhc
Confidence            444555555555555555555543

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.92  E-value=0.0047  Score=40.83  Aligned_cols=50  Identities=12%  Similarity=0.051  Sum_probs=18.7

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEM  330 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  330 (427)
                      .+.|++++|...|+.+.+.... +...+..+..++.+.|++++|...|+++
T Consensus         8 ~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    8 YQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3334444444444444333211 2333333333344444444444444433

>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase

Probab=96.91  E-value=0.014  Score=44.30  Aligned_cols=49  Identities=14%  Similarity=0.076  Sum_probs=22.9

Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCCHhHHHHHHHHH
Q 045814          371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK-GIFRDVITYNTLIQGY  419 (427)
Q Consensus       371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~li~~~  419 (427)
                      .|+..+..+++.+|+..|++..|+++.+...+. +++.+..+|..|++-+
T Consensus        49 ~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~   98 (126)
T PF12921_consen   49 YPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA   98 (126)
T ss_pred             CCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence            444444444444444444444444444444333 4444444444444433

The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].

>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B

Probab=96.84  E-value=0.0062  Score=40.23  Aligned_cols=53  Identities=19%  Similarity=0.176  Sum_probs=24.2

Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHH
Q 045814          146 QCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL  199 (427)
Q Consensus       146 ~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~  199 (427)
                      ..+.+.|++++|...|+.+.+.... +...+..+..++...|++++|...|+++
T Consensus         5 ~~~~~~g~~~~A~~~~~~~l~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~a   57 (65)
T PF13432_consen    5 RALYQQGDYDEAIAAFEQALKQDPD-NPEAWYLLGRILYQQGRYDEALAYYERA   57 (65)
T ss_dssp             HHHHHCTHHHHHHHHHHHHHCCSTT-HHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            3444455555555555555544322 3444444444444444444444444443

>KOG2041 consensus WD40 repeat protein [General function prediction only]

Probab=96.79  E-value=0.57  Score=45.45  Aligned_cols=131  Identities=8%  Similarity=-0.014  Sum_probs=70.5

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCC----HHhHHHHHHHHHhcCChhHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPN----PNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~A~  158 (427)
                      .+.++.|.+.+-.+-++          ..-+....+.|++-.+.++++.-|...|    ..+|+.+...++....+++|.
T Consensus       747 ~g~feeaek~yld~drr----------DLAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~  816 (1189)
T KOG2041|consen  747 YGEFEEAEKLYLDADRR----------DLAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAA  816 (1189)
T ss_pred             hcchhHhhhhhhccchh----------hhhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566666655544221          2235666777788777777775332222    335666666666666666666


Q ss_pred             HHHHHHHh---------------------cCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          159 CAFSKLKE---------------------MGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       159 ~~~~~m~~---------------------~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      +.|..-..                     ..++-+....-.+..++.+.|..++|.+.|-+-......+..|...++|.+
T Consensus       817 ~yY~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~pkaAv~tCv~LnQW~~  896 (1189)
T KOG2041|consen  817 KYYSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRSLPKAAVHTCVELNQWGE  896 (1189)
T ss_pred             HHHHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhccCcHHHHHHHHHHHHHHH
Confidence            55543211                     112224444455555666666666665555544444445555555556655


Q ss_pred             HHHHHH
Q 045814          218 GYELLR  223 (427)
Q Consensus       218 a~~~~~  223 (427)
                      |.++-+
T Consensus       897 avelaq  902 (1189)
T KOG2041|consen  897 AVELAQ  902 (1189)
T ss_pred             HHHHHH
Confidence            555543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.77  E-value=0.034  Score=48.41  Aligned_cols=96  Identities=9%  Similarity=-0.018  Sum_probs=40.7

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHH
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPD--TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL--LPNEYTYNSMIH  347 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~  347 (427)
                      |...+..+.+.|++++|...|+.+.+.-....  ...+-.+..+|...|++++|...|+.+.+.-.  ......+-.+..
T Consensus       146 Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg~  225 (263)
T PRK10803        146 YNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVGV  225 (263)
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHHH
Confidence            44444333444555555555555544421100  12334444455555555555555555543310  001122222333


Q ss_pred             HHhhcCCHHHHHHHHHHHHH
Q 045814          348 GYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~  367 (427)
                      .+...|+.++|..+|+.+.+
T Consensus       226 ~~~~~g~~~~A~~~~~~vi~  245 (263)
T PRK10803        226 IMQDKGDTAKAKAVYQQVIK  245 (263)
T ss_pred             HHHHcCCHHHHHHHHHHHHH
Confidence            44444555555555554444

>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A

Probab=96.74  E-value=0.007  Score=40.53  Aligned_cols=59  Identities=15%  Similarity=0.146  Sum_probs=23.3

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-NLEEAKRLHKEM  365 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m  365 (427)
                      +|..+...+...|++++|+..|++..+... -+...|..+..+|...| ++++|.+.++..
T Consensus         5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p-~~~~~~~~~g~~~~~~~~~~~~A~~~~~~a   64 (69)
T PF13414_consen    5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDP-NNAEAYYNLGLAYMKLGKDYEEAIEDFEKA   64 (69)
T ss_dssp             HHHHHHHHHHHTTHHHHHHHHHHHHHHHST-THHHHHHHHHHHHHHTTTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhCccHHHHHHHHHHH
Confidence            333344444444444444444444443321 12333333444444444 344444444433

...

>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]

Probab=96.73  E-value=0.13  Score=44.58  Aligned_cols=112  Identities=11%  Similarity=0.032  Sum_probs=75.5

Q ss_pred             CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 045814          267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWLGDARKMWFEMIHKGLLPNEYTYN  343 (427)
Q Consensus       267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~~~p~~~~~~  343 (427)
                      -|...|-.|...|...|+.+.|..-|....+...+ +...+..+..++...   ....++..+++++...+.. |..+..
T Consensus       154 ~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~-n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~  231 (287)
T COG4235         154 GDAEGWDLLGRAYMALGRASDALLAYRNALRLAGD-NPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALS  231 (287)
T ss_pred             CCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHH
Confidence            36778888888888888888888888887765332 445555555544432   2356788888888876432 566666


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA  382 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  382 (427)
                      .+...+...|++.+|...|+.|.+..  |....+..+|.
T Consensus       232 lLA~~afe~g~~~~A~~~Wq~lL~~l--p~~~~rr~~ie  268 (287)
T COG4235         232 LLAFAAFEQGDYAEAAAAWQMLLDLL--PADDPRRSLIE  268 (287)
T ss_pred             HHHHHHHHcccHHHHHHHHHHHHhcC--CCCCchHHHHH
Confidence            66777888888888888888888762  33344444444

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=96.68  E-value=0.48  Score=43.19  Aligned_cols=166  Identities=15%  Similarity=0.090  Sum_probs=94.0

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCC---CCCCHhhHHHHHHHHHh---cCChHHHHHHHHHHHhCCCCCChhhHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARN---RAPDNFTYEEVINGLCK---SRKRLEAYRVFNDLKERGYVPDTVMYTT  309 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~  309 (427)
                      +...++-.|....+++..+++.+.+....   +.-....--...-++.+   .|+.++|++++..+....-.++..+|..
T Consensus       143 iv~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL  222 (374)
T PF13281_consen  143 IVINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGL  222 (374)
T ss_pred             HHHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHH
Confidence            34455556777888888888888776541   11111122233344455   7888888888888655555567777777


Q ss_pred             HHHHHHc---------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----HHHHHHHH---H-HHHHCCC--
Q 045814          310 VIHGLCK---------MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN----LEEAKRLH---K-EMLDKGY--  370 (427)
Q Consensus       310 li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~a~~~~---~-~m~~~~~--  370 (427)
                      +...|-.         ....++|...|.+.-+.  .||.++--.+...+.-.|.    -.+..++-   . .+.+.|.  
T Consensus       223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~  300 (374)
T PF13281_consen  223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLE  300 (374)
T ss_pred             HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccc
Confidence            7766542         12366777777766554  2444332222222222232    11222222   1 1112222  


Q ss_pred             -CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          371 -GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       371 -~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                       ..|--.+.+++.++.-.|+.++|.+..++|.+.
T Consensus       301 ~~~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  301 KMQDYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             ccccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence             234556677888888888999988888888865

>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]

Probab=96.60  E-value=0.82  Score=44.75  Aligned_cols=281  Identities=15%  Similarity=0.179  Sum_probs=166.4

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHhcCCCC--CHHhHHHHHHHHHhcCCh--hHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDSTGFSP--NPNSLELYIQCLCESGLI--EEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~li~~~~~~~~~--~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      +-..+++-+...+.+..|.++-+-++.+-  +...|....+.+.+..+.  +++.+..++=...... ...+|..+.+-.
T Consensus       439 ~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~-~~iSy~~iA~~A  517 (829)
T KOG2280|consen  439 SEEVVIDRLVDRHLYSVAIQVAKLLNLPESQGDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLT-PGISYAAIARRA  517 (829)
T ss_pred             chhhhhHHHHhcchhHHHHHHHHHhCCccccccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCC-CceeHHHHHHHH
Confidence            34567888888999999998877655322  245566666666665322  2333333322222233 455677778877


Q ss_pred             HHcCChhHHHHHHHHHHhc-------------chhHHHHHhcCChhHHHHHHHHHHHCCCC----------C-CHHHHHH
Q 045814          184 IKIDRTDLVWKLYHDLIES-------------GYLIQAFCNDGKVSEGYELLRQVLEDGLV----------P-ENTAFNK  239 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~-------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~-~~~~~~~  239 (427)
                      ...|+.+.|..+++.=...             ...+.-+...|+.+....++..+...-..          | ....|.-
T Consensus       518 y~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~~~s~l~~~l~~~p~a~~lY~~  597 (829)
T KOG2280|consen  518 YQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKLNRSSLFMTLRNQPLALSLYRQ  597 (829)
T ss_pred             HhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHhchhhhHHHHH
Confidence            8899999998887543222             34666777888888888877776543111          1 1112222


Q ss_pred             HHH--------HHHccCChhHHHHHHH--HHhh----CCCCCCHhhHHHHHHHHHhcCChH----------HHHHHHHHH
Q 045814          240 LIS--------RFCEKKNFGRVSELLH--TMVA----RNRAPDNFTYEEVINGLCKSRKRL----------EAYRVFNDL  295 (427)
Q Consensus       240 li~--------~~~~~~~~~~a~~~~~--~m~~----~~~~~~~~~~~~ll~~~~~~~~~~----------~a~~~~~~m  295 (427)
                      +++        .+...++...+...|.  ...+    .+..|+   .....+.+.+.....          +-+++.+.+
T Consensus       598 ~~r~~~~~~l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~---lk~~a~~~a~sk~~s~e~ka~ed~~kLl~lQ~~L  674 (829)
T KOG2280|consen  598 FMRHQDRATLYDFYNQDDNHQALASFHLQASYAAETIEGRIPA---LKTAANAFAKSKEKSFEAKALEDQMKLLKLQRTL  674 (829)
T ss_pred             HHHhhchhhhhhhhhcccchhhhhhhhhhhhhhhhhhcccchh---HHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHH
Confidence            221        0111222222222221  1000    122222   223334444433311          112222333


Q ss_pred             H-hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh
Q 045814          296 K-ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT  374 (427)
Q Consensus       296 ~-~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  374 (427)
                      . +.|.....-+.+--+.-+...|+..+|.++-.+.+    -||...|-.=+.+++..+++++-+++-+.+.      ++
T Consensus       675 e~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sP  744 (829)
T KOG2280|consen  675 EDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SP  744 (829)
T ss_pred             HHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CC
Confidence            2 22433444566667777888899999998877654    4688889888999999999988777666543      36


Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .-|.-.+.+|.+.|+.++|.+++-+...
T Consensus       745 IGy~PFVe~c~~~~n~~EA~KYiprv~~  772 (829)
T KOG2280|consen  745 IGYLPFVEACLKQGNKDEAKKYIPRVGG  772 (829)
T ss_pred             CCchhHHHHHHhcccHHHHhhhhhccCC
Confidence            7788899999999999999999876543

>PRK10803 tol-pal system protein YbgF; Provisional

Probab=96.53  E-value=0.057  Score=47.04  Aligned_cols=98  Identities=12%  Similarity=0.006  Sum_probs=48.0

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CChhhHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVI  311 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li  311 (427)
                      .|...+..+.+.|++++|...|+.+.+..+...  ...+-.+...|...|++++|...|..+.+.-..  .....+-.+.
T Consensus       145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~klg  224 (263)
T PRK10803        145 DYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKVG  224 (263)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHHH
Confidence            344444444445566666666666555532111  134445555556666666666666665543111  0122333334


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 045814          312 HGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ..+...|+.++|..+|+++.+.
T Consensus       225 ~~~~~~g~~~~A~~~~~~vi~~  246 (263)
T PRK10803        225 VIMQDKGDTAKAKAVYQQVIKK  246 (263)
T ss_pred             HHHHHcCCHHHHHHHHHHHHHH
Confidence            4455556666666666655554

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=96.51  E-value=0.54  Score=41.60  Aligned_cols=231  Identities=13%  Similarity=0.071  Sum_probs=125.0

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH-------HcC-ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHH
Q 045814          149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI-------KID-RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE  220 (427)
Q Consensus       149 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~-------~~~-~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~  220 (427)
                      .+.|+++.|..++.+........++.....|...|.       ..+ +++.|..++++.                   .+
T Consensus         4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a-------------------~~   64 (278)
T PF08631_consen    4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRA-------------------YD   64 (278)
T ss_pred             hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHH-------------------HH
Confidence            456788888888887765431223333333333322       233 555555554433                   33


Q ss_pred             HHHHH-HHCCCCCC-----HHHHHHHHHHHHccCChh---HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814          221 LLRQV-LEDGLVPE-----NTAFNKLISRFCEKKNFG---RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       221 ~~~~~-~~~~~~~~-----~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                      +++.. ......|+     ..++..++.+|...+..+   +|.++++.+...... ...++-.-++.+.+.++.+++.++
T Consensus        65 ~l~~~~~~~~~~~~~~elr~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~  143 (278)
T PF08631_consen   65 ILEKPGKMDKLSPDGSELRLSILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEI  143 (278)
T ss_pred             HHHhhhhccccCCcHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHH
Confidence            33221 11112222     246777888888877744   566677666554322 245565667777778999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHH---HccCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HH---HHHhhcCC------HHH
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGL---CKMGWLGDARKMWFEMIHKGLLPNEY-TYNS-MI---HGYCRIDN------LEE  357 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~---~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~-li---~~~~~~g~------~~~  357 (427)
                      +.+|...-.. ....+..++..+   ... ....|...++.+....+.|... .... ++   -...+.++      ++.
T Consensus       144 L~~mi~~~~~-~e~~~~~~l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~  221 (278)
T PF08631_consen  144 LMRMIRSVDH-SESNFDSILHHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIES  221 (278)
T ss_pred             HHHHHHhccc-ccchHHHHHHHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHH
Confidence            9999876221 334555555555   333 3456777777777665665553 1111 11   11222222      444


Q ss_pred             HHHHHHHHHHC-CCCCChhhHHHHHH-------HHHhcCCHHHHHHHHHHHH
Q 045814          358 AKRLHKEMLDK-GYGETTVTYNTLIA-------GLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       358 a~~~~~~m~~~-~~~p~~~~~~~li~-------~~~~~g~~~~A~~~~~~m~  401 (427)
                      ..++++.+.+. +.+.+..+-.++..       .+.+.+++++|.+.|+-..
T Consensus       222 l~~~~~~v~~~~~~~ls~~~~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~al  273 (278)
T PF08631_consen  222 LEELLSIVEHSLGKQLSAEAASAIHTLLWNKGKKHYKAKNYDEAIEWYELAL  273 (278)
T ss_pred             HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH
Confidence            44555543332 33334433333322       3456889999999988543

It is also involved in sporulation [].

>PRK15331 chaperone protein SicA; Provisional

Probab=96.42  E-value=0.13  Score=40.58  Aligned_cols=88  Identities=7%  Similarity=-0.106  Sum_probs=58.9

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  358 (427)
                      +...|++++|..+|.-+.-.+.. +..-|..|..++-..+++++|...|......+. -|...+-....+|...|+.+.|
T Consensus        47 ~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~~A  124 (165)
T PRK15331         47 FYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAAKA  124 (165)
T ss_pred             HHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHHHH
Confidence            44677888888887777665443 444555566666667778888877777665543 2444455566777777888888


Q ss_pred             HHHHHHHHHC
Q 045814          359 KRLHKEMLDK  368 (427)
Q Consensus       359 ~~~~~~m~~~  368 (427)
                      ...|+...+.
T Consensus       125 ~~~f~~a~~~  134 (165)
T PRK15331        125 RQCFELVNER  134 (165)
T ss_pred             HHHHHHHHhC
Confidence            8877777663

>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]

Probab=96.41  E-value=0.025  Score=50.77  Aligned_cols=131  Identities=8%  Similarity=-0.032  Sum_probs=83.4

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHh----hCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHH----hCCC-CCChh
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMV----ARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLK----ERGY-VPDTV  305 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~----~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~----~~~~-~p~~~  305 (427)
                      .|..|-+.|.-.|++++|+...+.-.    +.|-. .....++.+.+++.-.|+++.|.+.|....    +.|- .....
T Consensus       197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ  276 (639)
T KOG1130|consen  197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ  276 (639)
T ss_pred             hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence            56667777777788888877665322    22221 123567778888888888888888777643    2222 12344


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHc----C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHK----G-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      +..+|..+|.-..++++|+.++.+-...    + ..-....+-+|..+|...|..++|..+.+.-.
T Consensus       277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl  342 (639)
T KOG1130|consen  277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL  342 (639)
T ss_pred             HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence            5666777777777788888877654322    1 11234567778888888888888877665543

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=96.38  E-value=0.39  Score=38.59  Aligned_cols=134  Identities=10%  Similarity=0.037  Sum_probs=68.4

Q ss_pred             CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcC
Q 045814          134 FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDG  213 (427)
Q Consensus       134 ~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g  213 (427)
                      .-|++..--.|..+..+.|+..+|...|++...--..-|....-.+.++.                          ...+
T Consensus        85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aq--------------------------fa~~  138 (251)
T COG4700          85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQ--------------------------FAIQ  138 (251)
T ss_pred             hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHH--------------------------Hhhc
Confidence            34555555555556666666666666666554322223333333333333                          3444


Q ss_pred             ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 045814          214 KVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                      ++..|...++.+.+.... -++.+.-.+...+...|++.+|+..|+.....-..|...  ......+.+.|+.+++..-+
T Consensus       139 ~~A~a~~tLe~l~e~~pa~r~pd~~Ll~aR~laa~g~~a~Aesafe~a~~~ypg~~ar--~~Y~e~La~qgr~~ea~aq~  216 (251)
T COG4700         139 EFAAAQQTLEDLMEYNPAFRSPDGHLLFARTLAAQGKYADAESAFEVAISYYPGPQAR--IYYAEMLAKQGRLREANAQY  216 (251)
T ss_pred             cHHHHHHHHHHHhhcCCccCCCCchHHHHHHHHhcCCchhHHHHHHHHHHhCCCHHHH--HHHHHHHHHhcchhHHHHHH
Confidence            555555555555443210 122244455667777777777777777777663333322  22333445666665554444


Q ss_pred             HHH
Q 045814          293 NDL  295 (427)
Q Consensus       293 ~~m  295 (427)
                      ..+
T Consensus       217 ~~v  219 (251)
T COG4700         217 VAV  219 (251)
T ss_pred             HHH
Confidence            333

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=96.37  E-value=0.028  Score=47.93  Aligned_cols=89  Identities=9%  Similarity=-0.006  Sum_probs=64.5

Q ss_pred             CCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----------------HHHHH
Q 045814          301 VPDTVMYTTVIHGLCKM-----GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN----------------LEEAK  359 (427)
Q Consensus       301 ~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----------------~~~a~  359 (427)
                      +-|-.+|..++..+...     +.++-....++.|.+.|+.-|..+|+.|+..+-+-.-                -+-+.
T Consensus        64 ~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I  143 (406)
T KOG3941|consen   64 KRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAI  143 (406)
T ss_pred             cccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHH
Confidence            34778888888887654     5678888888999999999999999999998765431                23355


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814          360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGR  389 (427)
Q Consensus       360 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  389 (427)
                      .++++|...|+.||..+-..|+.++.+.+-
T Consensus       144 ~vLeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  144 KVLEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            666666666666666666666666655554

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.36  E-value=0.061  Score=50.61  Aligned_cols=155  Identities=12%  Similarity=0.110  Sum_probs=93.3

Q ss_pred             hcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHH
Q 045814           82 QQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAF  161 (427)
Q Consensus        82 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~  161 (427)
                      -+++.+.+.+....-.--..+  +..-.+.++..+-+.|..+.|+++...      +.   .-.....+.|+++.|.++-
T Consensus       273 ~~~d~~~v~~~i~~~~ll~~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D------~~---~rFeLAl~lg~L~~A~~~a  341 (443)
T PF04053_consen  273 LRGDFEEVLRMIAASNLLPNI--PKDQGQSIARFLEKKGYPELALQFVTD------PD---HRFELALQLGNLDIALEIA  341 (443)
T ss_dssp             HTT-HHH-----HHHHTGGG----HHHHHHHHHHHHHTT-HHHHHHHSS-------HH---HHHHHHHHCT-HHHHHHHC
T ss_pred             HcCChhhhhhhhhhhhhcccC--ChhHHHHHHHHHHHCCCHHHHHhhcCC------hH---HHhHHHHhcCCHHHHHHHH
Confidence            456666666655421111111  244577777777788888888776432      21   2244555667777777665


Q ss_pred             HHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 045814          162 SKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLI  241 (427)
Q Consensus       162 ~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li  241 (427)
                      ++.      .+...|..|.+...+.|+++-|++.|.+....+.|+-.|.-.|+.+...++.+.....|      -++...
T Consensus       342 ~~~------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af  409 (443)
T PF04053_consen  342 KEL------DDPEKWKQLGDEALRQGNIELAEECYQKAKDFSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAF  409 (443)
T ss_dssp             CCC------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHH
T ss_pred             Hhc------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhcCccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHH
Confidence            443      25667888888888888888888888888777777778888888777777776666654      255666


Q ss_pred             HHHHccCChhHHHHHHHH
Q 045814          242 SRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~  259 (427)
                      .++.-.|+.++..+++.+
T Consensus       410 ~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  410 QAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHH
Confidence            666667888887777764

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>KOG2796 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.35  E-value=0.55  Score=39.99  Aligned_cols=140  Identities=14%  Similarity=0.061  Sum_probs=105.4

Q ss_pred             chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHH-----H
Q 045814          203 GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVI-----N  277 (427)
Q Consensus       203 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll-----~  277 (427)
                      ..++..+.-.|.+.-.+..+.+.++.....++.....|.+.-.+.||.+.|...|+...+..-..|..+++.++     .
T Consensus       181 y~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a~  260 (366)
T KOG2796|consen  181 YSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSAF  260 (366)
T ss_pred             HHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhhh
Confidence            34666666778888889999999988777788899999999999999999999999877654455555555544     3


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814          278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM  345 (427)
Q Consensus       278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  345 (427)
                      .|.-.+++..|...|.+....... |+...|.-.-+..-.|+...|.+.++.|...  .|...+-+++
T Consensus       261 i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~  325 (366)
T KOG2796|consen  261 LHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV  325 (366)
T ss_pred             heecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence            455678889999999888776543 5555555555555679999999999999986  4555444433

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.34  E-value=0.013  Score=40.38  Aligned_cols=61  Identities=23%  Similarity=0.294  Sum_probs=32.9

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GET-TVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +|+.+...|...|++++|...|++..+.    |- .|+ ..++..+...|...|++++|++++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555555666666666666666555432    11 111 3455566666666666666666666544

...

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.26  E-value=0.034  Score=37.58  Aligned_cols=53  Identities=15%  Similarity=0.106  Sum_probs=21.8

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      |.+.+++++|.++++.+.+.+.. +...|......+.+.|++++|...++...+
T Consensus         5 ~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~   57 (73)
T PF13371_consen    5 YLQQEDYEEALEVLERALELDPD-DPELWLQRARCLFQLGRYEEALEDLERALE   57 (73)
T ss_pred             HHhCCCHHHHHHHHHHHHHhCcc-cchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence            33444444444444444433222 333333344444444444444444444443

>PF13371 TPR_9: Tetratricopeptide repeat

Probab=96.25  E-value=0.042  Score=37.13  Aligned_cols=55  Identities=20%  Similarity=0.181  Sum_probs=32.2

Q ss_pred             HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .|.+.+++++|.++++.+...+. .+...|......+...|++++|.+.|+...+.
T Consensus         4 ~~~~~~~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~   58 (73)
T PF13371_consen    4 IYLQQEDYEEALEVLERALELDP-DDPELWLQRARCLFQLGRYEEALEDLERALEL   58 (73)
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCc-ccchhhHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            45556666666666666665532 24555555566666666666666666666654

>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H

Probab=96.21  E-value=0.016  Score=39.83  Aligned_cols=61  Identities=21%  Similarity=0.330  Sum_probs=33.0

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHK----GL-LPN-EYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      +|+.+...|...|++++|+..+++..+.    |- .|+ ..++..+..+|...|++++|.+++++..
T Consensus         7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al   73 (78)
T PF13424_consen    7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL   73 (78)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            4555556666666666666666655432    11 111 3345556666666666666666666544

...

>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=96.16  E-value=0.13  Score=48.46  Aligned_cols=126  Identities=21%  Similarity=0.214  Sum_probs=91.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCC
Q 045814           74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGL  153 (427)
Q Consensus        74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~  153 (427)
                      .-+...|...+-++.|+++...-..+             .+...+.|+++.|.++.++..   +...|..|.....+.|+
T Consensus       299 ~~i~~fL~~~G~~e~AL~~~~D~~~r-------------FeLAl~lg~L~~A~~~a~~~~---~~~~W~~Lg~~AL~~g~  362 (443)
T PF04053_consen  299 QSIARFLEKKGYPELALQFVTDPDHR-------------FELALQLGNLDIALEIAKELD---DPEKWKQLGDEALRQGN  362 (443)
T ss_dssp             HHHHHHHHHTT-HHHHHHHSS-HHHH-------------HHHHHHCT-HHHHHHHCCCCS---THHHHHHHHHHHHHTTB
T ss_pred             HHHHHHHHHCCCHHHHHhhcCChHHH-------------hHHHHhcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHcCC
Confidence            44556788888899998887665433             667788999999988866543   77899999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---hhHHHHHhcCChhHHHHHHHH
Q 045814          154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---YLIQAFCNDGKVSEGYELLRQ  224 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~  224 (427)
                      ++-|++.|++...         +..|+-.|.-.|+.+...++.+.....|   ....++.-.|+.++..+++.+
T Consensus       363 ~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~~~n~af~~~~~lgd~~~cv~lL~~  427 (443)
T PF04053_consen  363 IELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERGDINIAFQAALLLGDVEECVDLLIE  427 (443)
T ss_dssp             HHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred             HHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHccCHHHHHHHHHHcCCHHHHHHHHHH
Confidence            9999999987753         6677778888888888888877777554   455566667888777776654

This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.

>PRK15331 chaperone protein SicA; Provisional

Probab=96.15  E-value=0.49  Score=37.45  Aligned_cols=90  Identities=11%  Similarity=-0.023  Sum_probs=73.6

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD  391 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  391 (427)
                      .-+...|++++|..+|.-+...+.. +..-+..|..+|-..+++++|...|......+. -|+..+-....+|...|+.+
T Consensus        45 y~~y~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~-~dp~p~f~agqC~l~l~~~~  122 (165)
T PRK15331         45 YEFYNQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLK-NDYRPVFFTGQCQLLMRKAA  122 (165)
T ss_pred             HHHHHCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc-CCCCccchHHHHHHHhCCHH
Confidence            3345789999999999999887543 455567777788888999999999998876654 36667777889999999999


Q ss_pred             HHHHHHHHHHHC
Q 045814          392 EAYHLFEEMAQK  403 (427)
Q Consensus       392 ~A~~~~~~m~~~  403 (427)
                      .|...|+...+.
T Consensus       123 ~A~~~f~~a~~~  134 (165)
T PRK15331        123 KARQCFELVNER  134 (165)
T ss_pred             HHHHHHHHHHhC
Confidence            999999998884

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=96.12  E-value=1.1  Score=41.27  Aligned_cols=146  Identities=18%  Similarity=0.266  Sum_probs=113.9

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCC-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERG-YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY-NSMIH  347 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~  347 (427)
                      .+|...++...+..-.+.|..+|-+..+.| +.+++..++++|..++. |+..-|..+|+--...  .||...| +-.+.
T Consensus       398 ~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~kyl~  474 (660)
T COG5107         398 FVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKYLL  474 (660)
T ss_pred             hHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHHHH
Confidence            467778888888899999999999999998 66888999999998874 7788999999876554  4555544 45677


Q ss_pred             HHhhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          348 GYCRIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                      .+...++-+.|..+|+...+. +..+  ...|..+|+--..-|+...|..+-++|.+.  .|...+-..+.+.|.-
T Consensus       475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~--~pQen~~evF~Sry~i  547 (660)
T COG5107         475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL--VPQENLIEVFTSRYAI  547 (660)
T ss_pred             HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH--cCcHhHHHHHHHHHhh
Confidence            788899999999999966543 2223  578999999999999999999888888873  5565555555555543

>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]

Probab=96.10  E-value=0.24  Score=47.42  Aligned_cols=199  Identities=13%  Similarity=0.090  Sum_probs=111.3

Q ss_pred             cCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHH-------H--hc-C
Q 045814           99 HYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKL-------K--EM-G  168 (427)
Q Consensus        99 ~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m-------~--~~-g  168 (427)
                      +.|-.|+....   .+.++-.|++.+|-++|.+.|..      |-.+..|.....++.|.++...-       .  +. .
T Consensus       628 ~rge~P~~iLl---A~~~Ay~gKF~EAAklFk~~G~e------nRAlEmyTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~  698 (1081)
T KOG1538|consen  628 KRGETPNDLLL---ADVFAYQGKFHEAAKLFKRSGHE------NRALEMYTDLRMFDYAQEFLGSGDPKEKKMLIRKRAD  698 (1081)
T ss_pred             hcCCCchHHHH---HHHHHhhhhHHHHHHHHHHcCch------hhHHHHHHHHHHHHHHHHHhhcCChHHHHHHHHHHHH
Confidence            44566776543   45677889999999999887743      22233444444444444433211       0  00 0


Q ss_pred             CCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 045814          169 VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK  248 (427)
Q Consensus       169 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  248 (427)
                      -..++.-=.+....+...|+.++|..             .+...|-.+.+.++-+++-.    .+..+...+...+-+..
T Consensus       699 WAr~~kePkaAAEmLiSaGe~~KAi~-------------i~~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~  761 (1081)
T KOG1538|consen  699 WARNIKEPKAAAEMLISAGEHVKAIE-------------ICGDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLD  761 (1081)
T ss_pred             HhhhcCCcHHHHHHhhcccchhhhhh-------------hhhcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhcc
Confidence            00000011112223333344433332             23344444444444443332    24445555555566677


Q ss_pred             ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh-----------hHHHHHHHHHcc
Q 045814          249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV-----------MYTTVIHGLCKM  317 (427)
Q Consensus       249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-----------~~~~li~~~~~~  317 (427)
                      .+.-|-++|..|-+.         ..+++.....+++++|..+-++..+.  .||+.           -|.-.-.+|.++
T Consensus       762 ~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE~DrFeEAqkAfhkA  830 (1081)
T KOG1538|consen  762 SPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAENDRFEEAQKAFHKA  830 (1081)
T ss_pred             ccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhhhhhHHHHHHHHHHh
Confidence            788888888877432         35677778889999999888877654  33332           233445678888


Q ss_pred             CCHHHHHHHHHHHHHcC
Q 045814          318 GWLGDARKMWFEMIHKG  334 (427)
Q Consensus       318 g~~~~a~~~~~~m~~~~  334 (427)
                      |+-.+|..+++++....
T Consensus       831 Gr~~EA~~vLeQLtnna  847 (1081)
T KOG1538|consen  831 GRQREAVQVLEQLTNNA  847 (1081)
T ss_pred             cchHHHHHHHHHhhhhh
Confidence            99999999998886653

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=96.05  E-value=0.5  Score=36.75  Aligned_cols=84  Identities=17%  Similarity=0.048  Sum_probs=37.1

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814          274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  353 (427)
                      .++..+.+.+.+..+..+++.+...+. .+...++.++..|++.+ .++....++.      ..+......+++.|.+.+
T Consensus        12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~-~~~ll~~l~~------~~~~yd~~~~~~~c~~~~   83 (140)
T smart00299       12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYD-PQKEIERLDN------KSNHYDIEKVGKLCEKAK   83 (140)
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHC-HHHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence            344444444455555555555544442 34445555555555432 2233333321      012222333445555555


Q ss_pred             CHHHHHHHHHHH
Q 045814          354 NLEEAKRLHKEM  365 (427)
Q Consensus       354 ~~~~a~~~~~~m  365 (427)
                      -++++..++..+
T Consensus        84 l~~~~~~l~~k~   95 (140)
T smart00299       84 LYEEAVELYKKD   95 (140)
T ss_pred             cHHHHHHHHHhh
Confidence            555555555444

>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]

Probab=95.96  E-value=0.66  Score=37.35  Aligned_cols=99  Identities=10%  Similarity=0.092  Sum_probs=47.1

Q ss_pred             CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHH
Q 045814          267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---LLPNEYTYN  343 (427)
Q Consensus       267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~  343 (427)
                      |++..--.|..+....|+..+|...|.+...--+.-|....-.+.++....+++..|...++++.+..   -.||  +.-
T Consensus        87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~L  164 (251)
T COG4700          87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHL  164 (251)
T ss_pred             hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chH
Confidence            44444444555555555555555555554433233344444444455555555555555555554432   1122  223


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      .+.+.|...|....|+.-|+....
T Consensus       165 l~aR~laa~g~~a~Aesafe~a~~  188 (251)
T COG4700         165 LFARTLAAQGKYADAESAFEVAIS  188 (251)
T ss_pred             HHHHHHHhcCCchhHHHHHHHHHH
Confidence            334445555555555555555544

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=95.92  E-value=1.3  Score=40.36  Aligned_cols=170  Identities=15%  Similarity=0.028  Sum_probs=94.4

Q ss_pred             HHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH--HHhcCChHHHHHHHHHHHhCCCCCChhhHH---HH-------
Q 045814          243 RFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING--LCKSRKRLEAYRVFNDLKERGYVPDTVMYT---TV-------  310 (427)
Q Consensus       243 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~l-------  310 (427)
                      ++.-.|++++|..+-....+.+.   ...+...+++  +.-.++.+.|...|++.+..+  |+...-.   .+       
T Consensus       178 cl~~~~~~~~a~~ea~~ilkld~---~n~~al~vrg~~~yy~~~~~ka~~hf~qal~ld--pdh~~sk~~~~~~k~le~~  252 (486)
T KOG0550|consen  178 CLAFLGDYDEAQSEAIDILKLDA---TNAEALYVRGLCLYYNDNADKAINHFQQALRLD--PDHQKSKSASMMPKKLEVK  252 (486)
T ss_pred             hhhhcccchhHHHHHHHHHhccc---chhHHHHhcccccccccchHHHHHHHhhhhccC--hhhhhHHhHhhhHHHHHHH
Confidence            34456777777776665555431   2233444433  334567777777777776653  2322111   11       


Q ss_pred             ---HHHHHccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChh-hHHHH--H
Q 045814          311 ---IHGLCKMGWLGDARKMWFEMIHK---GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTV-TYNTL--I  381 (427)
Q Consensus       311 ---i~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l--i  381 (427)
                         ..-..+.|++..|.+.|.+.+..   ++.|+...|.....+..+.|+..+|+.-.+...+.    |.. +...+  .
T Consensus       253 k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~i----D~syikall~ra  328 (486)
T KOG0550|consen  253 KERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKI----DSSYIKALLRRA  328 (486)
T ss_pred             HhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhc----CHHHHHHHHHHH
Confidence               12234667788888888877654   34455566666666677778888888777777664    332 22222  2


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHh
Q 045814          382 AGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCK  421 (427)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~  421 (427)
                      .++...++|++|.+-+++..+..-.+ ...|+.-...++-+
T Consensus       329 ~c~l~le~~e~AV~d~~~a~q~~~s~e~r~~l~~A~~aLkk  369 (486)
T KOG0550|consen  329 NCHLALEKWEEAVEDYEKAMQLEKDCEIRRTLREAQLALKK  369 (486)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHH
Confidence            34445677778877777765542221 23344444444433

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.82  E-value=0.56  Score=35.39  Aligned_cols=138  Identities=12%  Similarity=0.121  Sum_probs=57.0

Q ss_pred             hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814          150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG  229 (427)
Q Consensus       150 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  229 (427)
                      -.|.+++..++..+....   .+..-||.++--....-+.+-..+.++.+-+.    .-....|++......+-.+   |
T Consensus        14 ldG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGki----FDis~C~NlKrVi~C~~~~---n   83 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKI----FDISKCGNLKRVIECYAKR---N   83 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGG----S-GGG-S-THHHHHHHHHT---T
T ss_pred             HhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCchhhcchHHHHHHHHHh---c
Confidence            346667777777766653   24455555555555555555555544443321    0011222222222222111   0


Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                        .+.......+......|+.++-.+++..+.+. -+++....-.+..+|.+.|+..++.+++.+.-+.|+
T Consensus        84 --~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~  151 (161)
T PF09205_consen   84 --KLSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL  151 (161)
T ss_dssp             -----HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred             --chHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence              12233444445555555555555555554432 233444444555555555555555555555555443

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]

Probab=95.75  E-value=0.09  Score=44.98  Aligned_cols=87  Identities=16%  Similarity=0.283  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHc-----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----------------ChHHHHHH
Q 045814          233 ENTAFNKLISRFCE-----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----------------KRLEAYRV  291 (427)
Q Consensus       233 ~~~~~~~li~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----------------~~~~a~~~  291 (427)
                      |..+|-..+..+..     .+.++-....++.|.+.|+.-|..+|+.|++.+-+-.                +-+-++++
T Consensus        66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v  145 (406)
T KOG3941|consen   66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV  145 (406)
T ss_pred             cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence            44455555544432     2334445555556666666666666666665543321                22345666


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGLCKMGW  319 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~  319 (427)
                      +++|...|+.||..+-..++.++.+.+.
T Consensus       146 LeqME~hGVmPdkE~e~~lvn~FGr~~~  173 (406)
T KOG3941|consen  146 LEQMEWHGVMPDKEIEDILVNAFGRWNF  173 (406)
T ss_pred             HHHHHHcCCCCchHHHHHHHHHhccccc
Confidence            6666666666666666666666666553

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=95.73  E-value=1.7  Score=40.22  Aligned_cols=88  Identities=13%  Similarity=0.075  Sum_probs=60.3

Q ss_pred             HHHHHHHHHHHHHcCCCCCHH----HHHHHHH--HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          320 LGDARKMWFEMIHKGLLPNEY----TYNSMIH--GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       320 ~~~a~~~~~~m~~~~~~p~~~----~~~~li~--~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      +.+-..+-+-+.+.|+.|-..    .-|.+.+  .+...|++.++.-.-.-+.+  +.|++.+|..+.-++....++++|
T Consensus       437 ~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL~~--iaPS~~~~RLlGl~l~e~k~Y~eA  514 (549)
T PF07079_consen  437 IPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWLTK--IAPSPQAYRLLGLCLMENKRYQEA  514 (549)
T ss_pred             HHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHH--hCCcHHHHHHHHHHHHHHhhHHHH
Confidence            445555555556667766433    2333333  24456888887766555554  679999999999999999999999


Q ss_pred             HHHHHHHHHCCCCCCHhHHHH
Q 045814          394 YHLFEEMAQKGIFRDVITYNT  414 (427)
Q Consensus       394 ~~~~~~m~~~g~~p~~~~~~~  414 (427)
                      ..++..+.     |+..++++
T Consensus       515 ~~~l~~LP-----~n~~~~ds  530 (549)
T PF07079_consen  515 WEYLQKLP-----PNERMRDS  530 (549)
T ss_pred             HHHHHhCC-----CchhhHHH
Confidence            99998765     56666554

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.72  E-value=0.22  Score=46.14  Aligned_cols=65  Identities=15%  Similarity=0.026  Sum_probs=52.5

Q ss_pred             CCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCH----HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814          103 SPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNP----NSLELYIQCLCESGLIEEAFCAFSKLKEM  167 (427)
Q Consensus       103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~  167 (427)
                      +.+...++.+..+|.+.|++++|+..|++ +.+.|+.    .+|..+..+|...|+.++|++.+++..+.
T Consensus        72 P~~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         72 VKTAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34577888888888888999999988887 5666764    35888888888899999999988888774

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=95.69  E-value=0.58  Score=46.33  Aligned_cols=61  Identities=18%  Similarity=0.184  Sum_probs=39.8

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNP--NSLELYIQCLCESGLIEEAFCAFSKLK  165 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~  165 (427)
                      ..-....-++.+.+...++.|..+-+..+..++.  .........+-+.|++++|...|-+-.
T Consensus       333 ~ek~le~kL~iL~kK~ly~~Ai~LAk~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI  395 (933)
T KOG2114|consen  333 IEKDLETKLDILFKKNLYKVAINLAKSQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETI  395 (933)
T ss_pred             eeccHHHHHHHHHHhhhHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHc
Confidence            3445566677778888888888887776544442  234444555667788888887775544

>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus

Probab=95.50  E-value=0.76  Score=34.71  Aligned_cols=136  Identities=13%  Similarity=0.108  Sum_probs=77.5

Q ss_pred             ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh---HHHHHHHHHccCCHHH
Q 045814          246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM---YTTVIHGLCKMGWLGD  322 (427)
Q Consensus       246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~~~~  322 (427)
                      -.|..++..+++.+...+.   +..-+|.+|--....-+-+-..++++.+-+   -.|...   .-.++..|+..|.   
T Consensus        14 ldG~V~qGveii~k~v~Ss---ni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~---   84 (161)
T PF09205_consen   14 LDGDVKQGVEIIEKTVNSS---NIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK---   84 (161)
T ss_dssp             HTT-HHHHHHHHHHHHHHS----HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT----
T ss_pred             HhchHHHHHHHHHHHcCcC---CccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc---
Confidence            3577788888887776653   344455555444444444555555555432   233322   1223333333322   


Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                                     +..-.+..+......|.-+.-.+++.++.+. -.+++...-.+..+|.+.|+..++-+++.+.-+
T Consensus        85 ---------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACe  148 (161)
T PF09205_consen   85 ---------------LSEYVDLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACE  148 (161)
T ss_dssp             -----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             ---------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence                           2334555677778888888888888888753 356788888888899999999999999999888


Q ss_pred             CCCC
Q 045814          403 KGIF  406 (427)
Q Consensus       403 ~g~~  406 (427)
                      +|++
T Consensus       149 kG~k  152 (161)
T PF09205_consen  149 KGLK  152 (161)
T ss_dssp             TT-H
T ss_pred             hchH
Confidence            8875

Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.

>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]

Probab=95.47  E-value=2.1  Score=39.55  Aligned_cols=132  Identities=16%  Similarity=0.230  Sum_probs=102.4

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCC-CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH-HHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARN-RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY-TTV  310 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~-~~l  310 (427)
                      -..+|...++.-.+..-++.|..+|-+..+.+ ..+++..++++|..++. |++.-|.++|+.-...  -||...| +-.
T Consensus       396 ~t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~--f~d~~~y~~ky  472 (660)
T COG5107         396 LTFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK--FPDSTLYKEKY  472 (660)
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh--CCCchHHHHHH
Confidence            34578888888888888999999999999988 57888999999988765 7888999999875544  2444433 456


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGLLPN--EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +.-+...++-+.|..+|+..... +..+  ...|..+|..-..-|++..+..+=++|.+.
T Consensus       473 l~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~  531 (660)
T COG5107         473 LLFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL  531 (660)
T ss_pred             HHHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence            67777889999999999965543 2222  468999999889999998888877777654

>smart00299 CLH Clathrin heavy chain repeat homology

Probab=95.40  E-value=0.95  Score=35.18  Aligned_cols=45  Identities=11%  Similarity=0.016  Sum_probs=23.1

Q ss_pred             hHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHc
Q 045814           73 PLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEA  119 (427)
Q Consensus        73 ~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~  119 (427)
                      +.-+...+...+.+.....+++++... + ..+...++.++..|++.
T Consensus        10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~-~-~~~~~~~~~li~ly~~~   54 (140)
T smart00299       10 VSEVVELFEKRNLLEELIPYLESALKL-N-SENPALQTKLIELYAKY   54 (140)
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHcc-C-ccchhHHHHHHHHHHHH
Confidence            333334444445566666666665443 2 24555566666666554

>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional

Probab=95.33  E-value=0.38  Score=44.62  Aligned_cols=64  Identities=11%  Similarity=-0.034  Sum_probs=48.2

Q ss_pred             CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT----VMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      +...++.+..+|.+.|++++|...|++..+..  |+.    .+|..+..+|...|+.++|+..+++..+.
T Consensus        74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~--Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel  141 (453)
T PLN03098         74 TAEDAVNLGLSLFSKGRVKDALAQFETALELN--PNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD  141 (453)
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            45677778888888888888888888877764  342    34777888888888888888888888775

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=95.27  E-value=2  Score=38.21  Aligned_cols=130  Identities=11%  Similarity=0.226  Sum_probs=80.5

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc--cCC----hhHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCCh
Q 045814          215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCE--KKN----FGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       215 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~--~~~----~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~  285 (427)
                      +++...+++.|.+.|+.-+..+|-+.......  ..+    ..++..+|+.|++..+   .++...+..++..  ..++.
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~  155 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV  155 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence            34566778888888888777666664433333  222    4578888899888754   3445566666554  33433


Q ss_pred             ----HHHHHHHHHHHhCCCCCChh--hHHHHHHHHHccCC--HHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          286 ----LEAYRVFNDLKERGYVPDTV--MYTTVIHGLCKMGW--LGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       286 ----~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                          +.++.+|+.+.+.|+..+..  ..+.++..+.....  ...+..+++.+.+.|+++....|..+.
T Consensus       156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG  224 (297)
T PF13170_consen  156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG  224 (297)
T ss_pred             HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence                45677888888877765433  33333332222222  457888888888888887777666553

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=95.11  E-value=3.7  Score=42.72  Aligned_cols=81  Identities=15%  Similarity=0.147  Sum_probs=47.2

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEY--TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      .+.+|..+|++++|+.+..++....   +..  +-..|+.-+...++.-+|-++..+....        ..-.+..|++.
T Consensus       971 Al~a~~~~~dWr~~l~~a~ql~~~~---de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd--------~~~av~ll~ka 1039 (1265)
T KOG1920|consen  971 ALKAYKECGDWREALSLAAQLSEGK---DELVILAEELVSRLVEQRKHYEAAKILLEYLSD--------PEEAVALLCKA 1039 (1265)
T ss_pred             HHHHHHHhccHHHHHHHHHhhcCCH---HHHHHHHHHHHHHHHHcccchhHHHHHHHHhcC--------HHHHHHHHhhH
Confidence            3556666666666666665553321   211  1245566666777777777777666543        23445566677


Q ss_pred             CCHHHHHHHHHHHH
Q 045814          388 GRTDEAYHLFEEMA  401 (427)
Q Consensus       388 g~~~~A~~~~~~m~  401 (427)
                      ..|++|.++-....
T Consensus      1040 ~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1040 KEWEEALRVASKAK 1053 (1265)
T ss_pred             hHHHHHHHHHHhcc
Confidence            77777777665544

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=95.11  E-value=2  Score=41.24  Aligned_cols=164  Identities=18%  Similarity=0.141  Sum_probs=108.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCC-CCCCH-----hhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChh
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARN-RAPDN-----FTYEEVINGLCK----SRKRLEAYRVFNDLKERGYVPDTV  305 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~~~~-----~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~  305 (427)
                      .+..+++..+=.||-+.+++.+.+..+.+ +.-..     -+|..++..++.    ....+.|.+++..+.+.  -|+..
T Consensus       190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~  267 (468)
T PF10300_consen  190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA  267 (468)
T ss_pred             HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence            45566777777899999999888766543 21111     234444444443    45678899999999876  46766


Q ss_pred             hHHHHH-HHHHccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          306 MYTTVI-HGLCKMGWLGDARKMWFEMIHKG---LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       306 ~~~~li-~~~~~~g~~~~a~~~~~~m~~~~---~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      .|...- +.+...|++++|.+.+++.....   .+.....+--+..++.-.++|++|.+.|..+.+.. ..+..+|.-+.
T Consensus       268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~  346 (468)
T PF10300_consen  268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA  346 (468)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence            555433 45667899999999999766421   11223345556677888899999999999998762 23445555444


Q ss_pred             H-HHHhcCCH-------HHHHHHHHHHHH
Q 045814          382 A-GLCLHGRT-------DEAYHLFEEMAQ  402 (427)
Q Consensus       382 ~-~~~~~g~~-------~~A~~~~~~m~~  402 (427)
                      . ++...|+.       ++|.++|.+...
T Consensus       347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~  375 (468)
T PF10300_consen  347 AACLLMLGREEEAKEHKKEAEELFRKVPK  375 (468)
T ss_pred             HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence            3 33456777       888888887654

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=94.98  E-value=2  Score=36.64  Aligned_cols=168  Identities=14%  Similarity=0.135  Sum_probs=106.9

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI  311 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  311 (427)
                      ...|+.-+ .-.+.|++++|.+.|+.+....+  +-...+--.++.++.+.+++++|....++....-..-...-|-.-|
T Consensus        35 ~~LY~~g~-~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl  113 (254)
T COG4105          35 SELYNEGL-TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL  113 (254)
T ss_pred             HHHHHHHH-HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence            34455443 44667888999998888876532  1123455666777888889999888888877653332233444444


Q ss_pred             HHHHcc-------CCH---HHHHHHHHHHHHc----CCCCCHHHH------------HHHHHHHhhcCCHHHHHHHHHHH
Q 045814          312 HGLCKM-------GWL---GDARKMWFEMIHK----GLLPNEYTY------------NSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       312 ~~~~~~-------g~~---~~a~~~~~~m~~~----~~~p~~~~~------------~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      .+.+.-       .+.   ..|..-|++++..    ...||...-            ..+.+.|.+.|.+..|..-+++|
T Consensus       114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~kr~~~~AA~nR~~~v  193 (254)
T COG4105         114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLKRGAYVAAINRFEEV  193 (254)
T ss_pred             HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence            444421       222   3444444444443    222332211            23566789999999999999999


Q ss_pred             HHCCCCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          366 LDKGYGET---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       366 ~~~~~~p~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .+. .+-+   ...+-.+..+|...|-.++|.+.-+-+...
T Consensus       194 ~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         194 LEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             Hhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            987 3323   345566778899999999998887777664

>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]

Probab=94.94  E-value=1.7  Score=44.93  Aligned_cols=118  Identities=19%  Similarity=0.141  Sum_probs=77.5

Q ss_pred             CcCHhhHH----HHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 045814          170 FGSIKTWN----SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC  245 (427)
Q Consensus       170 ~p~~~~~~----~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~  245 (427)
                      .|+...+.    +....+.+...+++|.-+|+..-+..-.+.+|..+|+|.+|+.+..++....-. -..+-..|+.-+.
T Consensus       932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~GklekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~ 1010 (1265)
T KOG1920|consen  932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGKLEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLV 1010 (1265)
T ss_pred             ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhccHHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHH
Confidence            44555444    444555667788888888877766666788888999999999888877532111 1122256777788


Q ss_pred             ccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          246 EKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       246 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                      ..++.-+|-+++.+....        ....+..|++...+++|.++-....
T Consensus      1011 e~~kh~eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1011 EQRKHYEAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred             HcccchhHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence            888888888888776543        2334455566667777776655443

>PF13170 DUF4003: Protein of unknown function (DUF4003)

Probab=94.92  E-value=2.6  Score=37.55  Aligned_cols=139  Identities=16%  Similarity=0.176  Sum_probs=86.1

Q ss_pred             hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCC---
Q 045814          154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL---  230 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---  230 (427)
                      +++...+++.|.+.|...+..+|-+..-.... .+-+....                   ....|..+++.|.+..+   
T Consensus        78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~-~~~~~~~~-------------------~~~ra~~iy~~mKk~H~fLT  137 (297)
T PF13170_consen   78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEE-EEKEDYDE-------------------IIQRAKEIYKEMKKKHPFLT  137 (297)
T ss_pred             HHHHHHHHHHHHHhccCccChHHHHHHHHHHh-cccccHHH-------------------HHHHHHHHHHHHHHhCcccc
Confidence            45677889999999999888777664444333 11111111                   13466777888876543   


Q ss_pred             CCCHHHHHHHHHHHHccCC----hhHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHhcCC--hHHHHHHHHHHHhCCCCC
Q 045814          231 VPENTAFNKLISRFCEKKN----FGRVSELLHTMVARNRAPDN--FTYEEVINGLCKSRK--RLEAYRVFNDLKERGYVP  302 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~~~~--~~~a~~~~~~m~~~~~~p  302 (427)
                      .++...+..++..  ..++    .+.++..|+.+.+.|+..+.  ...+.++........  ...+.++++.+.+.|+++
T Consensus       138 s~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ki  215 (297)
T PF13170_consen  138 SPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKI  215 (297)
T ss_pred             CccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCcc
Confidence            2345566666544  3333    35677888888887875443  344444443332222  447888999999999998


Q ss_pred             ChhhHHHHHHHH
Q 045814          303 DTVMYTTVIHGL  314 (427)
Q Consensus       303 ~~~~~~~li~~~  314 (427)
                      ....|..+.-..
T Consensus       216 k~~~yp~lGlLa  227 (297)
T PF13170_consen  216 KYMHYPTLGLLA  227 (297)
T ss_pred             ccccccHHHHHH
Confidence            888877654433

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=94.73  E-value=1.1  Score=38.46  Aligned_cols=96  Identities=17%  Similarity=0.154  Sum_probs=39.9

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CCChhhHHHHHH
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLL--PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY--GETTVTYNTLIA  382 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~  382 (427)
                      |+..+..+ +.|++..|..-|...++....  -....+--|..++...|+++.|..+|..+.+.-.  +--+..+-.|..
T Consensus       145 Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~  223 (262)
T COG1729         145 YNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGV  223 (262)
T ss_pred             HHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHH
Confidence            44433333 334455555555544443110  0111223344444555555555555554443310  001233344444


Q ss_pred             HHHhcCCHHHHHHHHHHHHHC
Q 045814          383 GLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       383 ~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ...+.|+.++|..+|++..+.
T Consensus       224 ~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         224 SLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHhcCHHHHHHHHHHHHHH
Confidence            444555555555555555443

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.68  E-value=0.72  Score=41.84  Aligned_cols=94  Identities=9%  Similarity=-0.017  Sum_probs=52.4

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH-HHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY-NTLIAGL  384 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~-~~li~~~  384 (427)
                      .++.+.-+|.+.+++.+|+..-++.+..+ ++|....-.=..+|...|+++.|+..|+.+.+.  .|+.... +.|+..-
T Consensus       259 ~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l~  335 (397)
T KOG0543|consen  259 CHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKLK  335 (397)
T ss_pred             HhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHH
Confidence            45556666666777777777777666664 335555555566666677777777777777664  3333333 3333333


Q ss_pred             HhcCCHH-HHHHHHHHHHH
Q 045814          385 CLHGRTD-EAYHLFEEMAQ  402 (427)
Q Consensus       385 ~~~g~~~-~A~~~~~~m~~  402 (427)
                      -+..... ...++|..|..
T Consensus       336 ~k~~~~~~kekk~y~~mF~  354 (397)
T KOG0543|consen  336 QKIREYEEKEKKMYANMFA  354 (397)
T ss_pred             HHHHHHHHHHHHHHHHHhh
Confidence            3333332 33556666654

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=94.58  E-value=0.49  Score=41.24  Aligned_cols=79  Identities=13%  Similarity=0.053  Sum_probs=49.5

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CCCCCChhhHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-----KGYGETTVTYN  378 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~~~~  378 (427)
                      ..++..++..+...|+.+.+...++++.... +-+...|..+|.+|.+.|+...|++.|+.+.+     .|+.|...+..
T Consensus       153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~  231 (280)
T COG3629         153 IKALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRA  231 (280)
T ss_pred             HHHHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHH
Confidence            3456666666666666777777666666654 23566666677777777777777666666554     36666666555


Q ss_pred             HHHHH
Q 045814          379 TLIAG  383 (427)
Q Consensus       379 ~li~~  383 (427)
                      .+...
T Consensus       232 ~y~~~  236 (280)
T COG3629         232 LYEEI  236 (280)
T ss_pred             HHHHH
Confidence            55444

>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]

Probab=94.48  E-value=0.78  Score=41.66  Aligned_cols=96  Identities=17%  Similarity=0.103  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT-YNSMIHG  348 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~-~~~li~~  348 (427)
                      .++..+.-+|.+.+++.+|++.-+..++.+.. |+...-.-..+|...|+++.|+..|+++++.  .|+... -+.++.+
T Consensus       258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~-N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l  334 (397)
T KOG0543|consen  258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPN-NVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL  334 (397)
T ss_pred             HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCC-chhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence            46777888889999999999999998887643 7777777788999999999999999999986  455444 4445544


Q ss_pred             HhhcCCH-HHHHHHHHHHHHC
Q 045814          349 YCRIDNL-EEAKRLHKEMLDK  368 (427)
Q Consensus       349 ~~~~g~~-~~a~~~~~~m~~~  368 (427)
                      -.+.... ++..++|..|...
T Consensus       335 ~~k~~~~~~kekk~y~~mF~k  355 (397)
T KOG0543|consen  335 KQKIREYEEKEKKMYANMFAK  355 (397)
T ss_pred             HHHHHHHHHHHHHHHHHHhhc
Confidence            4444443 4446788888654

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=94.15  E-value=0.15  Score=30.38  Aligned_cols=40  Identities=10%  Similarity=0.078  Sum_probs=28.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA  179 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l  179 (427)
                      .++..+...|.+.|++++|.++|++..+.... |...+..+
T Consensus         2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~-~~~a~~~L   41 (44)
T PF13428_consen    2 AAWLALARAYRRLGQPDEAERLLRRALALDPD-DPEAWRAL   41 (44)
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC-CHHHHHHh
Confidence            35667778888888888888888888876443 45555443

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.15  E-value=1.8  Score=32.69  Aligned_cols=91  Identities=13%  Similarity=0.043  Sum_probs=62.8

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH---hhHHHHHHHHHhcCC
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN---FTYEEVINGLCKSRK  284 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~---~~~~~ll~~~~~~~~  284 (427)
                      ++...|+.+.|++.|.+.+..-+. ....||.-..++.-.|+.++|.+=+++..+..-..+.   ..|..-...|...|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            455677888888888777765333 6678888888888888888888888877764322222   233333445667788


Q ss_pred             hHHHHHHHHHHHhCC
Q 045814          285 RLEAYRVFNDLKERG  299 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~  299 (427)
                      -+.|..-|+..-+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            888888888777665

>KOG4555 consensus TPR repeat-containing protein [Function unknown]

Probab=94.09  E-value=1.9  Score=32.55  Aligned_cols=91  Identities=12%  Similarity=-0.014  Sum_probs=51.2

Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH---HHHHHHHHhhcCC
Q 045814          278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT---YNSMIHGYCRIDN  354 (427)
Q Consensus       278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~---~~~li~~~~~~g~  354 (427)
                      ++...|+.+.|++.|......-.+ ....||.-.+++.-.|+.++|++=+++..+..-.-....   |..-...|-..|+
T Consensus        52 alaE~g~Ld~AlE~F~qal~l~P~-raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~  130 (175)
T KOG4555|consen   52 ALAEAGDLDGALELFGQALCLAPE-RASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN  130 (175)
T ss_pred             HHHhccchHHHHHHHHHHHHhccc-chHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence            345566677777777666554332 556666666777667777777666666665421112221   2222233555666


Q ss_pred             HHHHHHHHHHHHHCC
Q 045814          355 LEEAKRLHKEMLDKG  369 (427)
Q Consensus       355 ~~~a~~~~~~m~~~~  369 (427)
                      .+.|..=|+...+.|
T Consensus       131 dd~AR~DFe~AA~LG  145 (175)
T KOG4555|consen  131 DDAARADFEAAAQLG  145 (175)
T ss_pred             hHHHHHhHHHHHHhC
Confidence            666666666665554

>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]

Probab=93.96  E-value=5  Score=36.80  Aligned_cols=89  Identities=12%  Similarity=0.050  Sum_probs=49.6

Q ss_pred             HHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH
Q 045814          279 LCKSRKRLEAYRVFNDLKER---GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL  355 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  355 (427)
                      ..+.|++.+|.+.|.+.+..   +..|+...|.....+..+.|+.++|+.--++..+.+.. -...|..-..++...++|
T Consensus       259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~s-yikall~ra~c~l~le~~  337 (486)
T KOG0550|consen  259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSS-YIKALLRRANCHLALEKW  337 (486)
T ss_pred             HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHH-HHHHHHHHHHHHHHHHHH
Confidence            45667777777777766543   23344555655666666777777777666666554100 011222223344455667


Q ss_pred             HHHHHHHHHHHHC
Q 045814          356 EEAKRLHKEMLDK  368 (427)
Q Consensus       356 ~~a~~~~~~m~~~  368 (427)
                      ++|.+-++...+.
T Consensus       338 e~AV~d~~~a~q~  350 (486)
T KOG0550|consen  338 EEAVEDYEKAMQL  350 (486)
T ss_pred             HHHHHHHHHHHhh
Confidence            7777766666544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.89  E-value=3.6  Score=34.91  Aligned_cols=27  Identities=15%  Similarity=-0.009  Sum_probs=17.3

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLK  165 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~  165 (427)
                      ..|.-...+|...+++++|...+.+..
T Consensus        32 s~yekAAvafRnAk~feKakdcLlkA~   58 (308)
T KOG1585|consen   32 SLYEKAAVAFRNAKKFEKAKDCLLKAS   58 (308)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHH
Confidence            345555666777777777777665554

>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]

Probab=93.75  E-value=0.79  Score=39.99  Aligned_cols=60  Identities=20%  Similarity=0.263  Sum_probs=33.1

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                      ++..++..+...|+.+.+...++++....+ -+...|..+|.+|.+.|+...|+..|+.+.
T Consensus       155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~dp-~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~  214 (280)
T COG3629         155 ALTKLAEALIACGRADAVIEHLERLIELDP-YDEPAYLRLMEAYLVNGRQSAAIRAYRQLK  214 (280)
T ss_pred             HHHHHHHHHHhcccHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHcCCchHHHHHHHHHH
Confidence            455555555555555555555555555532 244555555555555555555555555553

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.75  E-value=2.5  Score=32.68  Aligned_cols=71  Identities=14%  Similarity=0.064  Sum_probs=35.5

Q ss_pred             HhcCChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          280 CKSRKRLEAYRVFNDLKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .+.|++++|.+.|+.+...-.-  -....--.++.+|.+.+++++|...+++.++....-...-|...+.+++
T Consensus        21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~   93 (142)
T PF13512_consen   21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLS   93 (142)
T ss_pred             HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHH
Confidence            4556666666666666544111  1223444455666666666666666666665532222233444444443

>PF13512 TPR_18: Tetratricopeptide repeat

Probab=93.72  E-value=2.5  Score=32.66  Aligned_cols=76  Identities=14%  Similarity=0.112  Sum_probs=52.4

Q ss_pred             HHHHHccCChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814          241 ISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK  316 (427)
Q Consensus       241 i~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  316 (427)
                      .....+.|++++|.+.|+.+..+-..  -....--.++.+|.+.+++++|...+++..+....---.-|-..+.+++.
T Consensus        17 a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~   94 (142)
T PF13512_consen   17 AQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY   94 (142)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence            34456678888888888888776321  12345667788888899999998888888877554333455555555554

>PF13281 DUF4071: Domain of unknown function (DUF4071)

Probab=93.71  E-value=5.5  Score=36.52  Aligned_cols=31  Identities=6%  Similarity=0.156  Sum_probs=22.1

Q ss_pred             CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          338 NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       338 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +---+.+++.++.-.|+.++|.+..+.|.+.
T Consensus       304 dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l  334 (374)
T PF13281_consen  304 DYWDVATLLEASVLAGDYEKAIQAAEKAFKL  334 (374)
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence            4445566777777777888888877777765

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=93.68  E-value=4.5  Score=35.39  Aligned_cols=148  Identities=13%  Similarity=0.094  Sum_probs=87.9

Q ss_pred             HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814          242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG  321 (427)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  321 (427)
                      ......|+..+|..+|......... +...--.+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus       142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~  220 (304)
T COG3118         142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP  220 (304)
T ss_pred             hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence            3456678888888888877766433 345566677788888888888888887754322112222223344455555555


Q ss_pred             HHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHHHHhcCCHHHHH
Q 045814          322 DARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       322 ~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~~~~~g~~~~A~  394 (427)
                      +...+-.+.-..   | |...-..+...+...|+.+.|.+.+-.+.+.  |.. |...=..+++.+.-.|.-+.+.
T Consensus       221 ~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~~Dp~~  292 (304)
T COG3118         221 EIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGPADPLV  292 (304)
T ss_pred             CHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCCCCHHH
Confidence            555554444442   3 4455555666777778888877766555543  333 4555666666666666444433

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=93.63  E-value=3.7  Score=34.26  Aligned_cols=224  Identities=16%  Similarity=0.086  Sum_probs=103.4

Q ss_pred             CChhHHHHHHHHHHhcCCC-cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814          152 GLIEEAFCAFSKLKEMGVF-GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGL  230 (427)
Q Consensus       152 ~~~~~A~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~  230 (427)
                      +....+...+......... .....+......+...+....+...+......                         ...
T Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------------------~~~   91 (291)
T COG0457          37 GELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALEL-------------------------ELL   91 (291)
T ss_pred             hhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhh-------------------------hhc
Confidence            4444555555555443222 12455556666666666666666555554421                         011


Q ss_pred             CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHH-HHHhcCChHHHHHHHHHHHhCCC--CCChhhH
Q 045814          231 VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN-GLCKSRKRLEAYRVFNDLKERGY--VPDTVMY  307 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~-~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~  307 (427)
                      ......+......+...+++..+.+.+.........+ ......... .+...|+++.|...+.+......  ......+
T Consensus        92 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~  170 (291)
T COG0457          92 PNLAEALLNLGLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEAL  170 (291)
T ss_pred             cchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHH
Confidence            1223334444444444445555555555554433222 111111122 45555666666666665533211  0122222


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      ......+...++.+.+...+..............+..+...+...++++.|...+......... ....+..+...+...
T Consensus       171 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~  249 (291)
T COG0457         171 LALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLEL  249 (291)
T ss_pred             HHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHc
Confidence            3333334455566666666666555421112344555555555666666666666665554211 123333333333344


Q ss_pred             CCHHHHHHHHHHHHH
Q 045814          388 GRTDEAYHLFEEMAQ  402 (427)
Q Consensus       388 g~~~~A~~~~~~m~~  402 (427)
                      |..+++...+.+...
T Consensus       250 ~~~~~~~~~~~~~~~  264 (291)
T COG0457         250 GRYEEALEALEKALE  264 (291)
T ss_pred             CCHHHHHHHHHHHHH
Confidence            556666666655554

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=93.53  E-value=4.8  Score=35.19  Aligned_cols=140  Identities=8%  Similarity=0.085  Sum_probs=95.6

Q ss_pred             ChHHHHHHHHHHHh-CCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814          284 KRLEAYRVFNDLKE-RGYVPDTVMYTTVIHGLCKMG--WLGDARKMWFEMIHK-GLLPNEYTYNSMIHGYCRIDNLEEAK  359 (427)
Q Consensus       284 ~~~~a~~~~~~m~~-~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~a~  359 (427)
                      ...+|+++|+.... ..+--|..+...+++......  ....-.++.+-+... |-.++..+...++..+++.+++.+-.
T Consensus       143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~  222 (292)
T PF13929_consen  143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF  222 (292)
T ss_pred             HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence            34566666663322 234447777777777776522  233333333333322 45677888889999999999999999


Q ss_pred             HHHHHHHHC-CCCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHCCCCCCHhHHHHHHHHHHhcC
Q 045814          360 RLHKEMLDK-GYGETTVTYNTLIAGLCLHGRTDEAYHLFEE-----MAQKGIFRDVITYNTLIQGYCKEG  423 (427)
Q Consensus       360 ~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~-----m~~~g~~p~~~~~~~li~~~~~~g  423 (427)
                      ++|+..... +..-|...|...|+.....|+..-..++.++     +.+.|+..+...-..+-+.|.+.|
T Consensus       223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~LF~~vd  292 (292)
T PF13929_consen  223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSELFKKVD  292 (292)
T ss_pred             HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHHHHhcC
Confidence            999988765 6667899999999999999998777666654     344567777777766666665543

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.52  E-value=5.2  Score=35.62  Aligned_cols=87  Identities=8%  Similarity=0.045  Sum_probs=37.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAF----NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK  281 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  281 (427)
                      -.+|...|+.+.....++++... ..+|...|    ..+.-++...|-+++|++.-++..+-+ +.|...-.++...+--
T Consensus       144 h~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~dAEk~A~ralqiN-~~D~Wa~Ha~aHVlem  221 (491)
T KOG2610|consen  144 HDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDDAEKQADRALQIN-RFDCWASHAKAHVLEM  221 (491)
T ss_pred             hhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchhHHHHHHhhccCC-CcchHHHHHHHHHHHh
Confidence            34455555555555555554432 11122111    112222334555555555555544443 2244444444444555


Q ss_pred             cCChHHHHHHHHH
Q 045814          282 SRKRLEAYRVFND  294 (427)
Q Consensus       282 ~~~~~~a~~~~~~  294 (427)
                      .|+..++.+...+
T Consensus       222 ~~r~Keg~eFM~~  234 (491)
T KOG2610|consen  222 NGRHKEGKEFMYK  234 (491)
T ss_pred             cchhhhHHHHHHh
Confidence            5555555544443

>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length

Probab=93.19  E-value=7.2  Score=36.29  Aligned_cols=258  Identities=13%  Similarity=0.082  Sum_probs=125.8

Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCCcCH------hhHHHHHHHHHHcCChhHHHHHHHHHHhcc------hh--HHHHHhc
Q 045814          147 CLCESGLIEEAFCAFSKLKEMGVFGSI------KTWNSALLGCIKIDRTDLVWKLYHDLIESG------YL--IQAFCND  212 (427)
Q Consensus       147 ~~~~~~~~~~A~~~~~~m~~~g~~p~~------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~------~l--~~~~~~~  212 (427)
                      .+-+.+++.+|.++|.++.+..-. +.      ..-+.++++|-. ++.+.....+....+..      .+  .-.+.+.
T Consensus        15 ~Lqkq~~~~esEkifskI~~e~~~-~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~   92 (549)
T PF07079_consen   15 ILQKQKKFQESEKIFSKIYDEKES-SPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQ   92 (549)
T ss_pred             HHHHHhhhhHHHHHHHHHHHHhhc-chHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHh
Confidence            345788999999999998764211 21      223445555543 23333333333333321      12  2223456


Q ss_pred             CChhHHHHHHHHHHHC--CCCC------------CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC----CCCHhhHHH
Q 045814          213 GKVSEGYELLRQVLED--GLVP------------ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----APDNFTYEE  274 (427)
Q Consensus       213 g~~~~a~~~~~~~~~~--~~~~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~~~~~~~~  274 (427)
                      +.+++|.+.+......  +..|            |-..=+..+.++...|.+.++..+++++...-+    .-+..+|+.
T Consensus        93 k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~  172 (549)
T PF07079_consen   93 KEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDR  172 (549)
T ss_pred             hhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHH
Confidence            7777777777665544  2221            112223445666677777777777777665432    356667776


Q ss_pred             HHHHHHhcC--------C-------hHHHHHHHHHHHhC------CCCCChhhHHHHHHHHHcc--CCHHHHHHHHHHHH
Q 045814          275 VINGLCKSR--------K-------RLEAYRVFNDLKER------GYVPDTVMYTTVIHGLCKM--GWLGDARKMWFEMI  331 (427)
Q Consensus       275 ll~~~~~~~--------~-------~~~a~~~~~~m~~~------~~~p~~~~~~~li~~~~~~--g~~~~a~~~~~~m~  331 (427)
                      ++-.++++-        .       ++.+.-...+|...      .+.|-......++....-.  .+..--++++..-.
T Consensus       173 ~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~~We  252 (549)
T PF07079_consen  173 AVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILENWE  252 (549)
T ss_pred             HHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHHHHH
Confidence            554444321        0       11122222222211      1122222222222222211  11122223333333


Q ss_pred             HcCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045814          332 HKGLLPNEY-TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE----TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       332 ~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  406 (427)
                      ..-+.|+.. ....++..+..  +.+++..+.+.+....+.+    =..++..++...++.++..+|...+.-+..-  .
T Consensus       253 ~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~l--d  328 (549)
T PF07079_consen  253 NFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKIL--D  328 (549)
T ss_pred             hhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhc--C
Confidence            333445433 22334444443  5666666666665543221    1346777777777888888888888777653  4


Q ss_pred             CCHh
Q 045814          407 RDVI  410 (427)
Q Consensus       407 p~~~  410 (427)
                      |+..
T Consensus       329 p~~s  332 (549)
T PF07079_consen  329 PRIS  332 (549)
T ss_pred             Ccch
Confidence            4443

Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.15  E-value=1.8  Score=41.49  Aligned_cols=132  Identities=14%  Similarity=0.136  Sum_probs=82.7

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID  187 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  187 (427)
                      .-+.+++.+.+.|-.++|+++      .+|+..-   .....+.|+++.|.++..+..      +..-|..|.++....+
T Consensus       616 ~rt~va~Fle~~g~~e~AL~~------s~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~~  680 (794)
T KOG0276|consen  616 IRTKVAHFLESQGMKEQALEL------STDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSAG  680 (794)
T ss_pred             hhhhHHhHhhhccchHhhhhc------CCChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhcc
Confidence            445556666666666666654      2222211   223345577777776665542      4566777777777777


Q ss_pred             ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 045814          188 RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM  260 (427)
Q Consensus       188 ~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  260 (427)
                      ++..|.+.|......+.|+-.+...|+-+....+-....+.|.      .|...-+|...|+++++.+++.+-
T Consensus       681 ~l~lA~EC~~~a~d~~~LlLl~t~~g~~~~l~~la~~~~~~g~------~N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  681 ELPLASECFLRARDLGSLLLLYTSSGNAEGLAVLASLAKKQGK------NNLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             cchhHHHHHHhhcchhhhhhhhhhcCChhHHHHHHHHHHhhcc------cchHHHHHHHcCCHHHHHHHHHhc
Confidence            7777777777777777777777777776655555555555543      233445566778888887777543

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=93.15  E-value=0.002  Score=50.70  Aligned_cols=52  Identities=8%  Similarity=-0.021  Sum_probs=21.8

Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          277 NGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       277 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      ..+.+.+.+.....+++.+...+...+....+.++..|++.++.++...+++
T Consensus        15 ~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~   66 (143)
T PF00637_consen   15 SAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLK   66 (143)
T ss_dssp             HHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTT
T ss_pred             HHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcc
Confidence            3333444444444444444433333334444444444444444444444443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=93.11  E-value=2.9  Score=34.09  Aligned_cols=95  Identities=17%  Similarity=0.192  Sum_probs=50.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh--hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-------
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT--VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-------  340 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-------  340 (427)
                      ..+..+.+.|++.|+.++|.+.|.++.+....+..  ..+-.+|......+++..+...+.+....-..+...       
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            35556666666667777777766666655333322  244555666666666666666666554331111111       


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      .|..+  ++...+++..|-+.|-+..
T Consensus       117 ~~~gL--~~l~~r~f~~AA~~fl~~~  140 (177)
T PF10602_consen  117 VYEGL--ANLAQRDFKEAAELFLDSL  140 (177)
T ss_pred             HHHHH--HHHHhchHHHHHHHHHccC
Confidence            11111  1234566776666665544

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.03  E-value=1.5  Score=41.93  Aligned_cols=97  Identities=13%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             HHcCChhHHHHHHHHH---HhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHH
Q 045814          184 IKIDRTDLVWKLYHDL---IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTM  260 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m  260 (427)
                      .+.|+++.|.++..+.   .++..|.++....|++..|.+.|....+         |..|+-.+...|+-+....+-...
T Consensus       648 l~lgrl~iA~~la~e~~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~  718 (794)
T KOG0276|consen  648 LKLGRLDIAFDLAVEANSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLA  718 (794)
T ss_pred             hhcCcHHHHHHHHHhhcchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHH
Confidence            4555666665554333   2234456666666666666666554432         334455555555555444444444


Q ss_pred             hhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       261 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      .+.|..      |...-+|...|+++++.+++.+-
T Consensus       719 ~~~g~~------N~AF~~~~l~g~~~~C~~lLi~t  747 (794)
T KOG0276|consen  719 KKQGKN------NLAFLAYFLSGDYEECLELLIST  747 (794)
T ss_pred             Hhhccc------chHHHHHHHcCCHHHHHHHHHhc
Confidence            444321      12223444556666666555443

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=92.99  E-value=7.1  Score=35.62  Aligned_cols=298  Identities=12%  Similarity=0.079  Sum_probs=183.8

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHH--HcCChHHHHHHHHhcC--CCCCHHhHHHHHH--HHHhcCChhHHH
Q 045814           85 NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV--EARAFKVAMDFLDSTG--FSPNPNSLELYIQ--CLCESGLIEEAF  158 (427)
Q Consensus        85 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~--~~~~~~~~~~li~--~~~~~~~~~~A~  158 (427)
                      .+..+.+.|..-.++.|       |..|-..+.  -.|+-..|.++-.+.+  +..|......|+.  +-.-.|+.+.|.
T Consensus        68 sP~t~~Ryfr~rKRdrg-------yqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar  140 (531)
T COG3898          68 SPYTARRYFRERKRDRG-------YQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDAR  140 (531)
T ss_pred             CcHHHHHHHHHHHhhhH-------HHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHH
Confidence            44455566665544433       344444443  4578888888877632  3445555555554  344579999999


Q ss_pred             HHHHHHHhcCCCcCHhhHHH----HHHHHHHcCChhHHHHHHHHHHhc--------chhHHHHHhcCChhHHHHHHHHHH
Q 045814          159 CAFSKLKEMGVFGSIKTWNS----ALLGCIKIDRTDLVWKLYHDLIES--------GYLIQAFCNDGKVSEGYELLRQVL  226 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~~~~~~----ll~~~~~~~~~~~a~~~~~~~~~~--------~~l~~~~~~~g~~~~a~~~~~~~~  226 (427)
                      +-|+.|..     |..+-..    |.-.-.+.|+.+.|.+.-+..-..        ...+...|..|+++.|+++++.-.
T Consensus       141 ~kfeAMl~-----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~  215 (531)
T COG3898         141 KKFEAMLD-----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQR  215 (531)
T ss_pred             HHHHHHhc-----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence            99999986     4444333    223334678888888777776654        247888999999999999998776


Q ss_pred             HCC-CCCCHHH--HHHHHHHHHc---cCChhHHHHHHHHHhhCCCCCCHh-hHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814          227 EDG-LVPENTA--FNKLISRFCE---KKNFGRVSELLHTMVARNRAPDNF-TYEEVINGLCKSRKRLEAYRVFNDLKERG  299 (427)
Q Consensus       227 ~~~-~~~~~~~--~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~~~~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  299 (427)
                      ... +.++..-  -..|+.+-..   .-+...|.+.-.+..+  +.||.. .--.-..++.+.|+..++-.+++.+-+..
T Consensus       216 ~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~e  293 (531)
T COG3898         216 AAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAE  293 (531)
T ss_pred             HHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcC
Confidence            543 3333221  1222222111   2234445544444433  344432 22334567889999999999999998886


Q ss_pred             CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 045814          300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY  377 (427)
Q Consensus       300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  377 (427)
                      ..|+..    .+..+.+.|+  .+..-++...+. .++|| ....-.+..+-...|++..|..--+....  ..|....|
T Consensus       294 PHP~ia----~lY~~ar~gd--ta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~  365 (531)
T COG3898         294 PHPDIA----LLYVRARSGD--TALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAY  365 (531)
T ss_pred             CChHHH----HHHHHhcCCC--cHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHH
Confidence            666533    2334455565  333333333222 13343 45566667777788999888876666654  35778888


Q ss_pred             HHHHHHHH-hcCCHHHHHHHHHHHHHCC
Q 045814          378 NTLIAGLC-LHGRTDEAYHLFEEMAQKG  404 (427)
Q Consensus       378 ~~li~~~~-~~g~~~~A~~~~~~m~~~g  404 (427)
                      -.|.+.-. ..|+-.++...+-+..+.-
T Consensus       366 lLlAdIeeAetGDqg~vR~wlAqav~AP  393 (531)
T COG3898         366 LLLADIEEAETGDQGKVRQWLAQAVKAP  393 (531)
T ss_pred             HHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence            88877654 4599999999988887753

>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans

Probab=92.96  E-value=9  Score=36.80  Aligned_cols=153  Identities=17%  Similarity=0.122  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcch---------------hHHHHH----hcCChhHHHHHHHHHHHCCCCCCHHH
Q 045814          176 WNSALLGCIKIDRTDLVWKLYHDLIESGY---------------LIQAFC----NDGKVSEGYELLRQVLEDGLVPENTA  236 (427)
Q Consensus       176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---------------l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~  236 (427)
                      +..++....=.|+-+.+++.+....+.+.               .+..++    ...+.+.|.+++..+...-  |+...
T Consensus       191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~y--P~s~l  268 (468)
T PF10300_consen  191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKRY--PNSAL  268 (468)
T ss_pred             HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHhC--CCcHH
Confidence            34445555555666666666665544321               111111    2456777888888887643  45444


Q ss_pred             HHHH-HHHHHccCChhHHHHHHHHHhhCCC---CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          237 FNKL-ISRFCEKKNFGRVSELLHTMVARNR---APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       237 ~~~l-i~~~~~~~~~~~a~~~~~~m~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      |... .+.+...|+.++|.+.|+.......   ......+--+.-.+.-..++++|.+.|..+.+.+-. +..+|.-+..
T Consensus       269 fl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-Ska~Y~Y~~a  347 (468)
T PF10300_consen  269 FLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-SKAFYAYLAA  347 (468)
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-HHHHHHHHHH
Confidence            4433 3455668888888888886653211   112233444455567778888888888888776433 3334443333


Q ss_pred             H-HHccCCH-------HHHHHHHHHHH
Q 045814          313 G-LCKMGWL-------GDARKMWFEMI  331 (427)
Q Consensus       313 ~-~~~~g~~-------~~a~~~~~~m~  331 (427)
                      + +...|+.       ++|..++.+..
T Consensus       348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp  374 (468)
T PF10300_consen  348 ACLLMLGREEEAKEHKKEAEELFRKVP  374 (468)
T ss_pred             HHHHhhccchhhhhhHHHHHHHHHHHH
Confidence            2 3345666       77777777664

In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.

>KOG2610 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.95  E-value=3.3  Score=36.80  Aligned_cols=190  Identities=12%  Similarity=-0.006  Sum_probs=122.1

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh--hH--HHHHHHHHhcCCh
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF--TY--EEVINGLCKSRKR  285 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~--~~--~~ll~~~~~~~~~  285 (427)
                      ...|+..+|-..++++.+.-+. |...++-.=.+|.-.|+.+.-...+++.... -.+|..  +|  ....-++..+|-+
T Consensus       114 ~~~g~~h~a~~~wdklL~d~Pt-Dlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y  191 (491)
T KOG2610|consen  114 WGRGKHHEAAIEWDKLLDDYPT-DLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIY  191 (491)
T ss_pred             hccccccHHHHHHHHHHHhCch-hhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccc
Confidence            4578888888888888876443 8888888888899999998888888887765 123332  22  3344455688999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLH  362 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~  362 (427)
                      ++|++.-++..+.+.. |.-.--+....+.-.|+..++.+++.+-...--..+   ..-|-...-.+...+.++.|+++|
T Consensus       192 ~dAEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy  270 (491)
T KOG2610|consen  192 DDAEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY  270 (491)
T ss_pred             hhHHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence            9999999988877543 666667777888888999999998776543311111   122333344556668999999999


Q ss_pred             HH-HHHCCCCCChhh---HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          363 KE-MLDKGYGETTVT---YNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       363 ~~-m~~~~~~p~~~~---~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      +. |.+.--+.|.+.   |.-+.-.-.+...+.+..++-+.+-+
T Consensus       271 D~ei~k~l~k~Da~a~~~~ld~dgv~~~~d~~~kld~la~~l~d  314 (491)
T KOG2610|consen  271 DREIWKRLEKDDAVARDVYLDLDGVDLRSDLWRKLDKLADSLTD  314 (491)
T ss_pred             HHHHHHHhhccchhhhhhhhhhhhHHhHHHHHHHHHhhhhhhcc
Confidence            85 444423334322   22223333344444444444444433

>PF13428 TPR_14: Tetratricopeptide repeat

Probab=92.91  E-value=0.48  Score=28.16  Aligned_cols=27  Identities=22%  Similarity=0.223  Sum_probs=14.1

Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          377 YNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       377 ~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      |..+...|...|++++|.++|++..+.
T Consensus         4 ~~~la~~~~~~G~~~~A~~~~~~~l~~   30 (44)
T PF13428_consen    4 WLALARAYRRLGQPDEAERLLRRALAL   30 (44)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            444455555555555555555555543

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.83  E-value=4.2  Score=32.57  Aligned_cols=101  Identities=19%  Similarity=0.242  Sum_probs=43.9

Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814          220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG  299 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  299 (427)
                      +.++.+...++.|+...+..+++.+.+.|.+.    .+..+...++-+|.......+-.+..  ....+.++=-+|.++ 
T Consensus        15 EYirSl~~~~i~~~~~L~~lli~lLi~~~~~~----~L~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR-   87 (167)
T PF07035_consen   15 EYIRSLNQHNIPVQHELYELLIDLLIRNGQFS----QLHQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR-   87 (167)
T ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH----HHHHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH-
Confidence            34444455555566666666666666655543    23333344444444333333322221  222233332233221 


Q ss_pred             CCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814          300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEM  330 (427)
Q Consensus       300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  330 (427)
                         =...+..++..+...|++-+|.++.+..
T Consensus        88 ---L~~~~~~iievLL~~g~vl~ALr~ar~~  115 (167)
T PF07035_consen   88 ---LGTAYEEIIEVLLSKGQVLEALRYARQY  115 (167)
T ss_pred             ---hhhhHHHHHHHHHhCCCHHHHHHHHHHc
Confidence               0012334445555555555555555443

>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1

Probab=92.80  E-value=4.2  Score=32.55  Aligned_cols=135  Identities=16%  Similarity=0.219  Sum_probs=87.7

Q ss_pred             HHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          254 SELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       254 ~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .+.+..+.+.++.|+...+..+++.+.+.|++...    ..+...++-+|.......+-.+..  ....+.++=-+|.+.
T Consensus        14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~~--~~~~~~Ql~lDMLkR   87 (167)
T PF07035_consen   14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLGN--QYPPAYQLGLDMLKR   87 (167)
T ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhHc--cChHHHHHHHHHHHH
Confidence            44556666778888888999999999999886554    444556666676665555544433  233444443344332


Q ss_pred             -CCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          334 -GLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       334 -~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                       +     ..+..++..+...|++-+|.++.+.....    +......++++-.+.++...-..+++-..+.
T Consensus        88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~----~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~  149 (167)
T PF07035_consen   88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKV----DSVPARKFLEAAANSNDDQLFYAVFRFFEER  149 (167)
T ss_pred             hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCc----ccCCHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence             1     13566777788889999999988775332    3334466777777888877666666666554

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=92.64  E-value=9.3  Score=36.12  Aligned_cols=75  Identities=16%  Similarity=0.204  Sum_probs=45.4

Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 045814          309 TVIHGLCKMGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAG  383 (427)
Q Consensus       309 ~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~  383 (427)
                      .+..++-+.|+.++|.+.+++|.+.... -+......|+.++...+.+.++..++.+..+...+. -..+|+..+-.
T Consensus       264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLk  340 (539)
T PF04184_consen  264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLK  340 (539)
T ss_pred             HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHH
Confidence            3455555678888888888877654211 123355667777778888888887777765432221 23456655543

The molecular function of this protein is uncertain.

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=92.57  E-value=0.33  Score=27.44  Aligned_cols=26  Identities=19%  Similarity=0.202  Sum_probs=20.0

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +|..|...|.+.|++++|.++|++..
T Consensus         1 al~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    1 ALNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            46778888888888888888888754

>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.53  E-value=13  Score=37.48  Aligned_cols=72  Identities=11%  Similarity=0.188  Sum_probs=48.0

Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHH----HHHHHHHCCCCCCHhHHHHHHHHH
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYH----LFEEMAQKGIFRDVITYNTLIQGY  419 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~----~~~~m~~~g~~p~~~~~~~li~~~  419 (427)
                      -++..+.+..+.+.+..+.+..-+.    ++..|..++..+++.+.++...+    +++.+.....-|.    ..+++.+
T Consensus       710 dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ipp----l~VL~~L  781 (933)
T KOG2114|consen  710 DLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPP----LHVLQIL  781 (933)
T ss_pred             HHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCH----HHHHHHH
Confidence            3566777778888888887776554    88899999999999986665444    4444444433333    3455555


Q ss_pred             HhcC
Q 045814          420 CKEG  423 (427)
Q Consensus       420 ~~~g  423 (427)
                      ++.+
T Consensus       782 akn~  785 (933)
T KOG2114|consen  782 AKNG  785 (933)
T ss_pred             hcCC
Confidence            5544

>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]

Probab=92.49  E-value=6  Score=33.60  Aligned_cols=204  Identities=12%  Similarity=0.086  Sum_probs=95.0

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      ...|..-..+|-...++++|..-+.+.  +..-+...|.       ..+..+.|.-+.++|.+.  .--+..|+-....|
T Consensus        31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY  101 (308)
T KOG1585|consen   31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY  101 (308)
T ss_pred             HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence            334555556666777888887766552  2121211111       122334555555555442  11234556666677


Q ss_pred             HHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC---CC--CCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED---GL--VPENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      ...|..+.|-..++..-+       .....++++|++++.+....   +-  ..-...+..+-..+.+...+++|-..+.
T Consensus       102 ~E~GspdtAAmaleKAak-------~lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~Eaa~a~l  174 (308)
T KOG1585|consen  102 VECGSPDTAAMALEKAAK-------ALENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTEAATAFL  174 (308)
T ss_pred             HHhCCcchHHHHHHHHHH-------HhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhHHHHHHH
Confidence            777777766665554432       23455667777776654421   10  0111233344444555555554444433


Q ss_pred             HHhhCC----CCCCH-hhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhhHHHHHHHHHccCCHHHHHHH
Q 045814          259 TMVARN----RAPDN-FTYEEVINGLCKSRKRLEAYRVFNDLKER---GYVPDTVMYTTVIHGLCKMGWLGDARKM  326 (427)
Q Consensus       259 ~m~~~~----~~~~~-~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~a~~~  326 (427)
                      +-....    --++. ..|-..|-.|.-..++..|++.++.-.+.   .-.-+..+...|+.+| ..|+.+++..+
T Consensus       175 Ke~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~kv  249 (308)
T KOG1585|consen  175 KEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIKKV  249 (308)
T ss_pred             HhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHHHH
Confidence            221110    01111 12333333444455666666666553221   1112444555566555 34555554443

>COG0457 NrfG FOG: TPR repeat [General function prediction only]

Probab=92.43  E-value=5.6  Score=33.10  Aligned_cols=189  Identities=15%  Similarity=0.026  Sum_probs=135.5

Q ss_pred             ChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814          214 KVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSELLHTMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                      ....+...+......... .....+......+...+++..+...+...... ........+......+...+++..+...
T Consensus        38 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  117 (291)
T COG0457          38 ELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALEL  117 (291)
T ss_pred             hHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHH
Confidence            344444555554443322 13567778888889999999999998887753 2344556777788888888999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHH-HHHccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          292 FNDLKERGYVPDTVMYTTVIH-GLCKMGWLGDARKMWFEMIHKGL--LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +.........+ ......... .+...|+++.|...+.+......  ......+......+...++.+.+...+....+.
T Consensus       118 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  196 (291)
T COG0457         118 LEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKL  196 (291)
T ss_pred             HHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhh
Confidence            99998764443 222333333 78899999999999999966321  123344444455577889999999999999876


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       369 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ........+..+...+...++++.|...+......
T Consensus       197 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  231 (291)
T COG0457         197 NPDDDAEALLNLGLLYLKLGKYEEALEYYEKALEL  231 (291)
T ss_pred             CcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhh
Confidence            32214677888888999999999999999998875

>PF13929 mRNA_stabil: mRNA stabilisation

Probab=92.43  E-value=7  Score=34.20  Aligned_cols=172  Identities=13%  Similarity=0.132  Sum_probs=96.1

Q ss_pred             hcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHH
Q 045814          166 EMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE-DGLVPENTAFNKLISRF  244 (427)
Q Consensus       166 ~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-~~~~~~~~~~~~li~~~  244 (427)
                      ..|.+++..-+..+++.+...-...+... |..+++.|         ..+.+|+.+|+.... ..+.-|..+...+++..
T Consensus       105 s~g~~Lt~~Dli~FL~~~i~~~~~~k~~~-Y~~LVk~N---------~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sM  174 (292)
T PF13929_consen  105 SMGCELTKEDLISFLKLVIINLSSNKSFN-YWDLVKRN---------KIVVEALKLYDGLNPDESIIFDEEVISLLLKSM  174 (292)
T ss_pred             HcCCCCcHHHHHHHHHHHHhccccccchH-HHHHHHhh---------HHHHHHHHHhhccCcccceeeChHHHHHHHHHH
Confidence            34555555555555555444433333322 33333222         223445555553221 23444666777777666


Q ss_pred             Hc-cC-ChhHHHHHHHHHhhC-CCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHccCCH
Q 045814          245 CE-KK-NFGRVSELLHTMVAR-NRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKMGWL  320 (427)
Q Consensus       245 ~~-~~-~~~~a~~~~~~m~~~-~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~g~~  320 (427)
                      .. .+ ....-.++.+-+... +..++..+...+++.++..+++.+-.++++.-... +..-|...|..+|......|+.
T Consensus       175 v~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~  254 (292)
T PF13929_consen  175 VIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQ  254 (292)
T ss_pred             HhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCH
Confidence            55 21 233333334433322 34667777888888888888888888888776554 5555788888888888888887


Q ss_pred             HHHHHHHHH-----HHHcCCCCCHHHHHHHHH
Q 045814          321 GDARKMWFE-----MIHKGLLPNEYTYNSMIH  347 (427)
Q Consensus       321 ~~a~~~~~~-----m~~~~~~p~~~~~~~li~  347 (427)
                      .-...+.++     +.+.|+..+...-..+-.
T Consensus       255 ~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~  286 (292)
T PF13929_consen  255 EVMRKIIDDGHLLWIKRNNVDVTDELRSQLSE  286 (292)
T ss_pred             HHHHHHhhCCCeEEeeecCCcCCHHHHHHHHH
Confidence            666665554     233345545444444433

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=92.09  E-value=2.6  Score=37.01  Aligned_cols=48  Identities=17%  Similarity=0.215  Sum_probs=23.4

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      ++++++.++..=.+.|+-||-.+++.+|+.+.+.+++.+|..+...|.
T Consensus       115 ~pq~~i~~l~npIqYGiF~dqf~~c~l~D~flk~~n~~~aa~vvt~~~  162 (418)
T KOG4570|consen  115 DPQKAIYTLVNPIQYGIFPDQFTFCLLMDSFLKKENYKDAASVVTEVM  162 (418)
T ss_pred             ChHHHHHHHhCcchhccccchhhHHHHHHHHHhcccHHHHHHHHHHHH
Confidence            344444444444444555555555555555555555554444444443

>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]

Probab=92.07  E-value=8  Score=34.90  Aligned_cols=126  Identities=12%  Similarity=0.052  Sum_probs=57.3

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHH-
Q 045814          274 EVINGLCKSRKRLEAYRVFNDLKERG-----YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNEYTYN-  343 (427)
Q Consensus       274 ~ll~~~~~~~~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~-  343 (427)
                      ++-.++...+.++++++.|+...+-.     ......+|..+-+.|.+..++++|.-+..+..+.    ++.--..-|. 
T Consensus       127 ~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~  206 (518)
T KOG1941|consen  127 SMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRA  206 (518)
T ss_pred             hHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHH
Confidence            34455555556666666665553321     0112335556666666666666665555444322    2111111122 


Q ss_pred             ----HHHHHHhhcCCHHHHHHHHHHHHH----CCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814          344 ----SMIHGYCRIDNLEEAKRLHKEMLD----KGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEE  399 (427)
Q Consensus       344 ----~li~~~~~~g~~~~a~~~~~~m~~----~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~  399 (427)
                          .+.-++-..|.+-.|.+..++..+    .|-.+ .......+.+.|...|+.+.|+.-|++
T Consensus       207 ~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~  271 (518)
T KOG1941|consen  207 MSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQ  271 (518)
T ss_pred             HHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHH
Confidence                122344455555555555554432    22111 122333444555566666666555544

>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.97  E-value=6  Score=34.19  Aligned_cols=97  Identities=10%  Similarity=0.124  Sum_probs=60.5

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-hhhHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD-TVMYTTVI  311 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~~li  311 (427)
                      .|+.-+.. .+.|++..|...|...++..+.  -....+-.|...+...|++++|-.+|..+.+.-.+ |. +.++--+.
T Consensus       144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg  222 (262)
T COG1729         144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG  222 (262)
T ss_pred             HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence            56666654 4456677777777777776432  12234556777777777777777777777654211 11 23445555


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 045814          312 HGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ....+.|+.++|..+|+++.+.
T Consensus       223 ~~~~~l~~~d~A~atl~qv~k~  244 (262)
T COG1729         223 VSLGRLGNTDEACATLQQVIKR  244 (262)
T ss_pred             HHHHHhcCHHHHHHHHHHHHHH
Confidence            6666777777777777777665

>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []

Probab=91.78  E-value=8.8  Score=33.94  Aligned_cols=163  Identities=13%  Similarity=0.095  Sum_probs=95.2

Q ss_pred             hcCChhHHHHHHHHHHHCC--CCCCH------HHHHHHHHHHHccCChhHHHHHHHHHhhC--------CCCCCH-----
Q 045814          211 NDGKVSEGYELLRQVLEDG--LVPEN------TAFNKLISRFCEKKNFGRVSELLHTMVAR--------NRAPDN-----  269 (427)
Q Consensus       211 ~~g~~~~a~~~~~~~~~~~--~~~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~~~~-----  269 (427)
                      +.|+.+.|..++.+.....  ..|+.      ..|+.=...+.+..+++.|...+++..+.        ...|+.     
T Consensus         5 ~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~elr~   84 (278)
T PF08631_consen    5 KQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSLLSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSELRL   84 (278)
T ss_pred             hhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHHHH
Confidence            4566666666666655432  12221      12333333333333887777777655432        122332     


Q ss_pred             hhHHHHHHHHHhcCChH---HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRL---EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      .++..++.+|...+..+   +|.++++.+...... ....+-.-+..+.+.++.+++.+.+.+|...- .-....+..++
T Consensus        85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l  162 (278)
T PF08631_consen   85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL  162 (278)
T ss_pred             HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence            35667788888877665   466667777554322 24455566777777899999999999999873 22344566666


Q ss_pred             HHHhhc--CCHHHHHHHHHHHHHCCCCCChh
Q 045814          347 HGYCRI--DNLEEAKRLHKEMLDKGYGETTV  375 (427)
Q Consensus       347 ~~~~~~--g~~~~a~~~~~~m~~~~~~p~~~  375 (427)
                      ..+-..  .....|...++.+....+.|...
T Consensus       163 ~~i~~l~~~~~~~a~~~ld~~l~~r~~~~~~  193 (278)
T PF08631_consen  163 HHIKQLAEKSPELAAFCLDYLLLNRFKSSED  193 (278)
T ss_pred             HHHHHHHhhCcHHHHHHHHHHHHHHhCCChh
Confidence            555222  23456777777776655555553

It is also involved in sporulation [].

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=91.40  E-value=6.3  Score=31.56  Aligned_cols=88  Identities=11%  Similarity=0.173  Sum_probs=38.5

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHH-HHHHH--HHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENT-AFNKL--ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL  286 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l--i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~  286 (427)
                      ...|+...|+..|++.-.....|-.. -..-|  .-.+...|.++++....+-+-..+-+--...-..|.-+-.+.|++.
T Consensus       105 a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a  184 (221)
T COG4649         105 AQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFA  184 (221)
T ss_pred             hhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchH
Confidence            34455555555555554433333222 11111  1123345555555555554433322212222334444445566666


Q ss_pred             HHHHHHHHHHh
Q 045814          287 EAYRVFNDLKE  297 (427)
Q Consensus       287 ~a~~~~~~m~~  297 (427)
                      +|...|..+..
T Consensus       185 ~A~~~F~qia~  195 (221)
T COG4649         185 KAKSWFVQIAN  195 (221)
T ss_pred             HHHHHHHHHHc
Confidence            66666665544

>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome

Probab=91.35  E-value=3.6  Score=33.54  Aligned_cols=98  Identities=13%  Similarity=0.068  Sum_probs=69.6

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH--HHHHHHHHHHhhcCCHHHHHHHHHHHHHC---CCCCChhhHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE--YTYNSMIHGYCRIDNLEEAKRLHKEMLDK---GYGETTVTYNT  379 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~  379 (427)
                      ..+..+...|++.|+.+.|.+.|.++.+....+..  ..+-.+|+.....+++..+...+.+....   |-.++...--.
T Consensus        37 ~~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk  116 (177)
T PF10602_consen   37 MALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK  116 (177)
T ss_pred             HHHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence            46788899999999999999999999987554443  35667788888999999999988877644   22222221111


Q ss_pred             HHH--HHHhcCCHHHHHHHHHHHHH
Q 045814          380 LIA--GLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       380 li~--~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ...  .+...|++.+|-+.|-+...
T Consensus       117 ~~~gL~~l~~r~f~~AA~~fl~~~~  141 (177)
T PF10602_consen  117 VYEGLANLAQRDFKEAAELFLDSLS  141 (177)
T ss_pred             HHHHHHHHHhchHHHHHHHHHccCc
Confidence            122  23457899999988876643

This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.

>KOG4570 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.19  E-value=1  Score=39.47  Aligned_cols=102  Identities=15%  Similarity=0.163  Sum_probs=74.0

Q ss_pred             CCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHH-----hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhh
Q 045814          101 GFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPN-----SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT  175 (427)
Q Consensus       101 ~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-----~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  175 (427)
                      |...+..+...++.......+++.+...+-+....|+..     +-.+.++.+ -.-++++++.++..=...|+.||.++
T Consensus        59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll-lky~pq~~i~~l~npIqYGiF~dqf~  137 (418)
T KOG4570|consen   59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL-LKYDPQKAIYTLVNPIQYGIFPDQFT  137 (418)
T ss_pred             CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH-HccChHHHHHHHhCcchhccccchhh
Confidence            556667777777776667778888888876654444321     222333333 33467788888888888999999999


Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcc
Q 045814          176 WNSALLGCIKIDRTDLVWKLYHDLIESG  203 (427)
Q Consensus       176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~  203 (427)
                      ++.+|+.+.+.+++.+|.++...|+..+
T Consensus       138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe  165 (418)
T KOG4570|consen  138 FCLLMDSFLKKENYKDAASVVTEVMMQE  165 (418)
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence            9999999999999999988888777653

>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A

Probab=91.15  E-value=0.53  Score=26.53  Aligned_cols=25  Identities=16%  Similarity=0.081  Sum_probs=15.3

Q ss_pred             HHHHHHHHHhcCChhHHHHHHHHHH
Q 045814          141 LELYIQCLCESGLIEEAFCAFSKLK  165 (427)
Q Consensus       141 ~~~li~~~~~~~~~~~A~~~~~~m~  165 (427)
                      |+.|...|.+.|++++|.++|++..
T Consensus         2 l~~Lg~~~~~~g~~~~Ai~~y~~aL   26 (36)
T PF13176_consen    2 LNNLGRIYRQQGDYEKAIEYYEQAL   26 (36)
T ss_dssp             HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            5566666666666666666666643

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=91.12  E-value=1.8  Score=30.73  Aligned_cols=45  Identities=13%  Similarity=0.266  Sum_probs=22.0

Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      ++.+-++.+....+.|++....+.+++|-+.+++..|.++++-.+
T Consensus        25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK   69 (103)
T cd00923          25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIK   69 (103)
T ss_pred             HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            344444444444445555555555555555555555555555444

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PRK11906 transcriptional regulator; Provisional

Probab=91.04  E-value=13  Score=34.85  Aligned_cols=160  Identities=9%  Similarity=0.024  Sum_probs=102.7

Q ss_pred             HHH--HHHHHHHHcc-----CChhHHHHHHHHHhhC-CCCCCH-hhHHHHHHHHHh---------cCChHHHHHHHHHHH
Q 045814          235 TAF--NKLISRFCEK-----KNFGRVSELLHTMVAR-NRAPDN-FTYEEVINGLCK---------SRKRLEAYRVFNDLK  296 (427)
Q Consensus       235 ~~~--~~li~~~~~~-----~~~~~a~~~~~~m~~~-~~~~~~-~~~~~ll~~~~~---------~~~~~~a~~~~~~m~  296 (427)
                      ..|  ...+.+....     .+.+.|..+|.+.... ...|+- ..|..+-.++..         .....+|.+.-++..
T Consensus       252 ~a~~~d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAv  331 (458)
T PRK11906        252 NHYLSDEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVS  331 (458)
T ss_pred             cchhhHHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHH
Confidence            455  5555555442     2256788888888732 234543 445444443332         223456777777788


Q ss_pred             hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCCh-
Q 045814          297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETT-  374 (427)
Q Consensus       297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-  374 (427)
                      +.+.. |......+..+....++.+.|...|++....  .|| ..+|......+.-.|+.++|.+.+++..+.  .|.. 
T Consensus       332 eld~~-Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L--~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~  406 (458)
T PRK11906        332 DITTV-DGKILAIMGLITGLSGQAKVSHILFEQAKIH--STDIASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRR  406 (458)
T ss_pred             hcCCC-CHHHHHHHHHHHHhhcchhhHHHHHHHHhhc--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--Cchhh
Confidence            77655 8888888888788888899999999999886  444 344544455556679999999999997664  3332 


Q ss_pred             --hhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814          375 --VTYNTLIAGLCLHGRTDEAYHLFEEM  400 (427)
Q Consensus       375 --~~~~~li~~~~~~g~~~~A~~~~~~m  400 (427)
                        ......++.|+.+ ..+.|.++|-+-
T Consensus       407 ~~~~~~~~~~~~~~~-~~~~~~~~~~~~  433 (458)
T PRK11906        407 KAVVIKECVDMYVPN-PLKNNIKLYYKE  433 (458)
T ss_pred             HHHHHHHHHHHHcCC-chhhhHHHHhhc
Confidence              3333444566655 567777777543

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=90.44  E-value=2.1  Score=30.70  Aligned_cols=44  Identities=14%  Similarity=0.241  Sum_probs=18.4

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       323 a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      ..+-++.+....+.|++....+.+++|-+.+++..|.++++-++
T Consensus        29 ~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK   72 (108)
T PF02284_consen   29 LRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIK   72 (108)
T ss_dssp             HHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence            33334444444444444444444444444444444444444444

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4105 ComL DNA uptake lipoprotein [General function prediction only]

Probab=90.44  E-value=11  Score=32.45  Aligned_cols=58  Identities=16%  Similarity=0.121  Sum_probs=33.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +..-|.+.|.+-.|..-+++|.+. ..-+   ...+-.+..+|-..|-.++|.+.-+-+..+
T Consensus       173 IaryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~~N  233 (254)
T COG4105         173 IARYYLKRGAYVAAINRFEEVLEN-YPDTSAVREALARLEEAYYALGLTDEAKKTAKVLGAN  233 (254)
T ss_pred             HHHHHHHhcChHHHHHHHHHHHhc-cccccchHHHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence            345566667777777777777665 2111   123445566666777766666665555443

>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi

Probab=90.02  E-value=22  Score=35.55  Aligned_cols=125  Identities=14%  Similarity=0.234  Sum_probs=69.4

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHH-HHHHHccCChhHHHHHHHHHhhCC---CCCCHhhHHHHH
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLED----GLVPENTAFNKL-ISRFCEKKNFGRVSELLHTMVARN---RAPDNFTYEEVI  276 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~~---~~~~~~~~~~ll  276 (427)
                      ++..+.+.+... |...+++.+..    +..+-...|..+ +..+...++...|.+.++.....-   ..|-..++..++
T Consensus       106 l~~i~~~~~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~  184 (608)
T PF10345_consen  106 LARIYFKTNPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLS  184 (608)
T ss_pred             HHHHHHhcCHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHH
Confidence            444555555444 66666665542    222233344444 333333478888999888776542   244445555555


Q ss_pred             HHHH--hcCChHHHHHHHHHHHhCC---------CCCChhhHHHHHHHHH--ccCCHHHHHHHHHHH
Q 045814          277 NGLC--KSRKRLEAYRVFNDLKERG---------YVPDTVMYTTVIHGLC--KMGWLGDARKMWFEM  330 (427)
Q Consensus       277 ~~~~--~~~~~~~a~~~~~~m~~~~---------~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m  330 (427)
                      .+..  +.+..+++.+..+++....         ..|-..+|..+++.++  ..|+++.+...++++
T Consensus       185 ~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l  251 (608)
T PF10345_consen  185 EALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL  251 (608)
T ss_pred             HHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            5543  4566677777777663321         1234556777776554  567766666655554

It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].

>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]

Probab=89.87  E-value=13  Score=32.63  Aligned_cols=161  Identities=11%  Similarity=0.110  Sum_probs=94.3

Q ss_pred             hHHHHHHHHHHhcch-----hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814          190 DLVWKLYHDLIESGY-----LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN  264 (427)
Q Consensus       190 ~~a~~~~~~~~~~~~-----l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  264 (427)
                      +...++++.......     -.......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+....
T Consensus       120 sqlr~~ld~~~~~~~e~~~~~~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~  198 (304)
T COG3118         120 SQLRQFLDKVLPAEEEEALAEAKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQA  198 (304)
T ss_pred             HHHHHHHHHhcChHHHHHHHHhhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccc
Confidence            344555555544311     233556778888888888887765444 45566677788888888888888888776543


Q ss_pred             CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC-CCCHHHH
Q 045814          265 RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL-LPNEYTY  342 (427)
Q Consensus       265 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~~~~~  342 (427)
                      -.........-|..+.+.....+...+-.+.-..   | |...=-.+...+...|+.++|.+.+-.+.+.+. .-|...=
T Consensus       199 ~~~~~~~l~a~i~ll~qaa~~~~~~~l~~~~aad---Pdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~R  275 (304)
T COG3118         199 QDKAAHGLQAQIELLEQAAATPEIQDLQRRLAAD---PDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEAR  275 (304)
T ss_pred             hhhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhC---CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHH
Confidence            2222223233344455555555444444444432   3 444555566777778888888776666655421 1234445


Q ss_pred             HHHHHHHhhcCC
Q 045814          343 NSMIHGYCRIDN  354 (427)
Q Consensus       343 ~~li~~~~~~g~  354 (427)
                      ..++..+.-.|.
T Consensus       276 k~lle~f~~~g~  287 (304)
T COG3118         276 KTLLELFEAFGP  287 (304)
T ss_pred             HHHHHHHHhcCC
Confidence            556665555553

>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1

Probab=89.81  E-value=5.8  Score=28.53  Aligned_cols=65  Identities=11%  Similarity=0.010  Sum_probs=48.1

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHH
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGY  419 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~  419 (427)
                      +.-+..+-+..+...++-|++.+..+.+++|.+.+++.-|.++|+-.+.+. .+....|..+++-.
T Consensus        25 D~we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~-~~~~~~Y~~~lqEl   89 (108)
T PF02284_consen   25 DGWELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKC-GNKKEIYPYILQEL   89 (108)
T ss_dssp             -HHHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHT-TT-TTHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cChHHHHHHHHHHH
Confidence            344677788888888999999999999999999999999999999998862 22333787777643

9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....

>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=89.65  E-value=9.3  Score=30.65  Aligned_cols=128  Identities=15%  Similarity=0.107  Sum_probs=64.0

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHH--HHHhhcCCH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMI--HGYCRIDNL  355 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li--~~~~~~g~~  355 (427)
                      .+.++.++|+.-|..+.+.|..--+. .-..+.....+.|+...|...|+++-.....|-.. -...|=  -.+...|.+
T Consensus        69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy  148 (221)
T COG4649          69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY  148 (221)
T ss_pred             HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence            45566666666666666654431110 11112223445666777777777665543333322 111111  123455666


Q ss_pred             HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC
Q 045814          356 EEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR  407 (427)
Q Consensus       356 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p  407 (427)
                      +......+-+...+-+.-...-..|.-+-.+.|++.+|.+.|+.+......|
T Consensus       149 ~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~ap  200 (221)
T COG4649         149 DDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAP  200 (221)
T ss_pred             HHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCc
Confidence            6666655555443322222333445555566777777777777666543333

>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]

Probab=88.77  E-value=26  Score=34.59  Aligned_cols=119  Identities=13%  Similarity=0.007  Sum_probs=56.5

Q ss_pred             ccCChhHHHHHHHHHhh-------CCCCCCHhhHHHHHHHHHhcC-----ChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814          246 EKKNFGRVSELLHTMVA-------RNRAPDNFTYEEVINGLCKSR-----KRLEAYRVFNDLKERGYVPDTVMYTTVIHG  313 (427)
Q Consensus       246 ~~~~~~~a~~~~~~m~~-------~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  313 (427)
                      ...|.+.|+..|+.+.+       .|   .......+...|.+..     +.+.|..++...-+.|.. +....-..+.-
T Consensus       261 ~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g~~-~a~~~lg~~~~  336 (552)
T KOG1550|consen  261 VTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELGNP-DAQYLLGVLYE  336 (552)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcCCc-hHHHHHHHHHH
Confidence            44556666666665554       33   2223444445554422     455566666666666542 43333222222


Q ss_pred             HHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh--hcCCHHHHHHHHHHHHHCC
Q 045814          314 LCK-MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC--RIDNLEEAKRLHKEMLDKG  369 (427)
Q Consensus       314 ~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~~  369 (427)
                      ... ..+...|.++|...-..|..+ ...+-.++-...  -..+...|..++++..+.|
T Consensus       337 ~g~~~~d~~~A~~yy~~Aa~~G~~~-A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g  394 (552)
T KOG1550|consen  337 TGTKERDYRRAFEYYSLAAKAGHIL-AIYRLALCYELGLGVERNLELAFAYYKKAAEKG  394 (552)
T ss_pred             cCCccccHHHHHHHHHHHHHcCChH-HHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc
Confidence            222 134566777777766666421 111111111111  1225666666666666665

>PRK11906 transcriptional regulator; Provisional

Probab=88.72  E-value=21  Score=33.57  Aligned_cols=146  Identities=10%  Similarity=0.001  Sum_probs=92.6

Q ss_pred             hhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHc---------cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814          215 VSEGYELLRQVLE-DGLVPE-NTAFNKLISRFCE---------KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR  283 (427)
Q Consensus       215 ~~~a~~~~~~~~~-~~~~~~-~~~~~~li~~~~~---------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  283 (427)
                      .+.|+.+|.+... ....|+ ...|..+..++..         ..+..+|.+.-+...+.+. -|......+..+..-.+
T Consensus       274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld~-~Da~a~~~~g~~~~~~~  352 (458)
T PRK11906        274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDITT-VDGKILAIMGLITGLSG  352 (458)
T ss_pred             HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHhhc
Confidence            4567777777762 223333 3344443333221         2334567777777777763 36777777777777888


Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHH
Q 045814          284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKR  360 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~  360 (427)
                      +++.|...|++....+.. ...+|....-.+.-.|+.++|.+.+++..+.  .|..   ......+..|+.. .++.|.+
T Consensus       353 ~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrL--sP~~~~~~~~~~~~~~~~~~-~~~~~~~  428 (458)
T PRK11906        353 QAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQL--EPRRRKAVVIKECVDMYVPN-PLKNNIK  428 (458)
T ss_pred             chhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc--CchhhHHHHHHHHHHHHcCC-chhhhHH
Confidence            899999999999887543 3445655566666789999999999997765  3332   2333445566655 4677777


Q ss_pred             HHHHH
Q 045814          361 LHKEM  365 (427)
Q Consensus       361 ~~~~m  365 (427)
                      ++-+-
T Consensus       429 ~~~~~  433 (458)
T PRK11906        429 LYYKE  433 (458)
T ss_pred             HHhhc
Confidence            76543

>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene

Probab=88.60  E-value=23  Score=33.69  Aligned_cols=129  Identities=8%  Similarity=0.003  Sum_probs=72.2

Q ss_pred             HcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCC
Q 045814          185 KIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARN  264 (427)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~  264 (427)
                      ......+++++|++.++.+-..-.  +....+..-..++........+-..+-..+..++-+.|+.++|.+.+.+|.+..
T Consensus       212 eA~Ti~Eae~l~rqAvkAgE~~lg--~s~~~~~~g~~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~  289 (539)
T PF04184_consen  212 EASTIVEAEELLRQAVKAGEASLG--KSQFLQHHGHFWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEF  289 (539)
T ss_pred             cccCHHHHHHHHHHHHHHHHHhhc--hhhhhhcccchhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhC
Confidence            345567888888877765321111  000000000111111122222223333446666677899999999999887654


Q ss_pred             CCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC-ChhhHHHHHHHHH
Q 045814          265 RAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP-DTVMYTTVIHGLC  315 (427)
Q Consensus       265 ~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~  315 (427)
                      ... .......|+.++...+.+.++..++.+-.+..... -...|+..+--+-
T Consensus       290 p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~YTaALLkaR  342 (539)
T PF04184_consen  290 PNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICYTAALLKAR  342 (539)
T ss_pred             CccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHHHHHHHHHH
Confidence            322 33577788899999999999999988875433221 2346666554433

The molecular function of this protein is uncertain.

>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases

Probab=88.49  E-value=20  Score=32.82  Aligned_cols=199  Identities=12%  Similarity=0.042  Sum_probs=90.4

Q ss_pred             HHHHHHcCChHHHHHHHHhcCC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC----cCHhhHHHHHHHHHHcC
Q 045814          113 FDSLVEARAFKVAMDFLDSTGF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF----GSIKTWNSALLGCIKID  187 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~----p~~~~~~~ll~~~~~~~  187 (427)
                      .++..+.|+++...+....... .++...+..+...  +.++++++....++....-..    .....|........+..
T Consensus         5 ~eaaWrl~~Wd~l~~~~~~~~~~~~~~~~~~al~~l--~~~~~~~~~~~i~~~r~~~~~~l~~~~~~s~~~~y~~l~~lq   82 (352)
T PF02259_consen    5 AEAAWRLGDWDLLEEYLSQSNEDSPEYSFYRALLAL--RQGDYDEAKKYIEKARQLLLDELSALSSESYQRAYPSLVKLQ   82 (352)
T ss_pred             HHHHHhcCChhhHHHHHhhccCCChhHHHHHHHHHH--hCccHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHh
Confidence            5667788888887666665432 2344444444443  778888888887776543110    01122222222222222


Q ss_pred             ChhHHHHHHHHHHhcchhHHHHHh-cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC
Q 045814          188 RTDLVWKLYHDLIESGYLIQAFCN-DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA  266 (427)
Q Consensus       188 ~~~~a~~~~~~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  266 (427)
                      .+.+..++.+-...       ... ..+.....+.++.=.. ...++..++..++..-.-         ++..+  ....
T Consensus        83 ~L~Elee~~~~~~~-------~~~~~~~~~~l~~~W~~Rl~-~~~~~~~~~~~il~~R~~---------~l~~~--~~~~  143 (352)
T PF02259_consen   83 QLVELEEIIELKSN-------LSQNPQDLKSLLKRWRSRLP-NMQDDFSVWEPILSLRRL---------VLSLI--LLPE  143 (352)
T ss_pred             HHHHHHHHHHHHHh-------hcccHHHHHHHHHHHHHHHH-HhccchHHHHHHHHHHHH---------HHhcc--cchh
Confidence            22222222211100       000 1111122222221111 123344444444432110         00000  1112


Q ss_pred             CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      ....+|..+.+.+.+.|.++.|...+..+.+.+...   +....-.-+...-..|+..+|+..+++...
T Consensus       144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~  212 (352)
T PF02259_consen  144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK  212 (352)
T ss_pred             HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            234566667777777777777777777766543211   222333344555566777777777666655

Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding

>COG3898 Uncharacterized membrane-bound protein [Function unknown]

Probab=88.45  E-value=20  Score=32.88  Aligned_cols=272  Identities=14%  Similarity=0.037  Sum_probs=173.2

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHH--HcCChHHHHHHHHhcCCCCCHHh--HHHHHHHHHhcCChhHHHH
Q 045814           84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV--EARAFKVAMDFLDSTGFSPNPNS--LELYIQCLCESGLIEEAFC  159 (427)
Q Consensus        84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~A~~  159 (427)
                      ++-..|.+.-....+.  +..|..-.-.++.+-.  -.|+++.|.+-|+.|--.|....  ...|.-.--+.|..+.|.+
T Consensus        98 Gda~lARkmt~~~~~l--lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~dPEtRllGLRgLyleAqr~GareaAr~  175 (531)
T COG3898          98 GDASLARKMTARASKL--LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDDPETRLLGLRGLYLEAQRLGAREAARH  175 (531)
T ss_pred             CchHHHHHHHHHHHhh--hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcChHHHHHhHHHHHHHHHhcccHHHHHH
Confidence            5556666555544322  4556666655655433  46999999999999754554332  2333344456788888888


Q ss_pred             HHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch------------hHHHHH---hcCChhHHHHHHHH
Q 045814          160 AFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------LIQAFC---NDGKVSEGYELLRQ  224 (427)
Q Consensus       160 ~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------l~~~~~---~~g~~~~a~~~~~~  224 (427)
                      .-+..-..-.. -...+...+...+..|+++.|+++.+.-.....            |+.+-.   -..+...|...-.+
T Consensus       176 yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~  254 (531)
T COG3898         176 YAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALE  254 (531)
T ss_pred             HHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHH
Confidence            88877665333 467888999999999999999999987665421            221111   12234455444444


Q ss_pred             HHHCCCCCCHH-HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCC
Q 045814          225 VLEDGLVPENT-AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVP  302 (427)
Q Consensus       225 ~~~~~~~~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p  302 (427)
                      ..+  +.||.. .-..-...+.+.|+..++-.+++.+=+....|++.    .+..+.+.|+..  ..-+++..+. ..+|
T Consensus       255 a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia----~lY~~ar~gdta--~dRlkRa~~L~slk~  326 (531)
T COG3898         255 ANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIA----LLYVRARSGDTA--LDRLKRAKKLESLKP  326 (531)
T ss_pred             Hhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHH----HHHHHhcCCCcH--HHHHHHHHHHHhcCc
Confidence            333  344432 23334578899999999999999998886666542    223344556543  3333333221 2233


Q ss_pred             -ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH-hhcCCHHHHHHHHHHHHHC
Q 045814          303 -DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY-CRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       303 -~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~-~~~g~~~~a~~~~~~m~~~  368 (427)
                       +..+--.+..+-...|++..|..--+....  ..|....|..|.+.- +..|+-.++...+.+..+.
T Consensus       327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~A  392 (531)
T COG3898         327 NNAESSLAVAEAALDAGEFSAARAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKA  392 (531)
T ss_pred             cchHHHHHHHHHHHhccchHHHHHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence             445666677788889999888776666655  367888888777654 3459999999999888765

>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va

Probab=88.12  E-value=7.6  Score=27.66  Aligned_cols=64  Identities=11%  Similarity=0.012  Sum_probs=52.8

Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG  418 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  418 (427)
                      +.-++.+-++.+...++-|++.+..+.+++|.+.+++.-|.++|+-.+.+. ..+...|..+++-
T Consensus        22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~lqe   85 (103)
T cd00923          22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYILQE   85 (103)
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHHHH
Confidence            566778888888888999999999999999999999999999999888652 1245577777654

Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.

>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=87.43  E-value=0.46  Score=37.10  Aligned_cols=84  Identities=18%  Similarity=0.260  Sum_probs=45.8

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      ++..+.+.+.+.....+++.+...+...+....+.++..|++.++.++..++++..       +..-...++..|.+.|.
T Consensus        13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~-------~~yd~~~~~~~c~~~~l   85 (143)
T PF00637_consen   13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTS-------NNYDLDKALRLCEKHGL   85 (143)
T ss_dssp             CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSS-------SSS-CTHHHHHHHTTTS
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccc-------cccCHHHHHHHHHhcch
Confidence            45555566666666666666666554455666677777777766666666655511       11222344555555555


Q ss_pred             hHHHHHHHHHH
Q 045814          285 RLEAYRVFNDL  295 (427)
Q Consensus       285 ~~~a~~~~~~m  295 (427)
                      +++|.-++.++
T Consensus        86 ~~~a~~Ly~~~   96 (143)
T PF00637_consen   86 YEEAVYLYSKL   96 (143)
T ss_dssp             HHHHHHHHHCC
T ss_pred             HHHHHHHHHHc
Confidence            55555555443

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=87.36  E-value=13  Score=29.48  Aligned_cols=52  Identities=15%  Similarity=0.143  Sum_probs=30.8

Q ss_pred             HccCChhHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814          245 CEKKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKER  298 (427)
Q Consensus       245 ~~~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  298 (427)
                      .+.++.+++..++..+.-..+. +...++...  .+...|++.+|.++|+++.+.
T Consensus        21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~--l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGW--LHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HccCChHHHHHHHHHHHHhCCCchHHHHHHHH--HHHHhCCHHHHHHHHHHHhcc
Confidence            4566777777777776654321 122233332  345777777777777777655

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=87.22  E-value=1.7  Score=25.06  Aligned_cols=28  Identities=32%  Similarity=0.437  Sum_probs=21.1

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .+++.|...|...|++++|..++++..+
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al~   30 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEALE   30 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence            4677788888888888888888877654

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=87.21  E-value=1.7  Score=23.85  Aligned_cols=27  Identities=19%  Similarity=0.290  Sum_probs=16.1

Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      +|..+...|...|++++|+..|++..+
T Consensus         3 ~~~~~g~~~~~~~~~~~A~~~~~~al~   29 (34)
T PF00515_consen    3 AYYNLGNAYFQLGDYEEALEYYQRALE   29 (34)
T ss_dssp             HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence            455566666666666666666666655

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=86.96  E-value=28  Score=32.88  Aligned_cols=120  Identities=10%  Similarity=0.083  Sum_probs=76.4

Q ss_pred             HhcCChhHHHH-HHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814          210 CNDGKVSEGYE-LLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA  288 (427)
Q Consensus       210 ~~~g~~~~a~~-~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  288 (427)
                      ...|++..|-+ ++..+......|+.....+  ..+...|+++.+...+...... +.....+..+++....+.|++++|
T Consensus       300 ~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~--~i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a  376 (831)
T PRK15180        300 LADGDIIAASQQLFAALRNQQQDPVLIQLRS--VIFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREA  376 (831)
T ss_pred             hhccCHHHHHHHHHHHHHhCCCCchhhHHHH--HHHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHH
Confidence            45566665554 4444444444455444433  3356678888888877655432 333556777888888888888888


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ..+-.-|....++ +...........-..|-++++...|+++...
T Consensus       377 ~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~  420 (831)
T PRK15180        377 LSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLL  420 (831)
T ss_pred             HHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHHHHHHHhcc
Confidence            8888888776665 4444444444445567778888888877654

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=86.93  E-value=7.2  Score=32.15  Aligned_cols=21  Identities=10%  Similarity=0.037  Sum_probs=9.2

Q ss_pred             ChhhHHHHHHHHHccCCHHHH
Q 045814          303 DTVMYTTVIHGLCKMGWLGDA  323 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a  323 (427)
                      |+..+.+|++.+.+.|+++.|
T Consensus       177 n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  177 NPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             CHHHHHHHHHHHHHhcchhhh
Confidence            344444444444444444443

>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]

Probab=86.70  E-value=30  Score=33.01  Aligned_cols=163  Identities=13%  Similarity=0.169  Sum_probs=75.0

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      |....-+++..++.+.++.-++.+..+|...|.  +-..|..++..|... ..++-..+|+++.+..+. |+..-..|..
T Consensus        65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e--~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~  140 (711)
T COG1747          65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGE--SKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD  140 (711)
T ss_pred             cchHHHHHHHHhccchHHHHHHHHHHHHHHhcc--hHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence            344455555666666556666666666655542  344555566666555 445555566655555443 3333333333


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHHHHHHh
Q 045814          313 GLCKMGWLGDARKMWFEMIHKGLL-----PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGETTVTYNTLIAGLCL  386 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~  386 (427)
                      -|.+ ++...+..+|.++...=++     .-...|.-+....  ..+.+...++..++.+. |...-...+.-+-.-|..
T Consensus       141 ~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys~  217 (711)
T COG1747         141 KYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYSE  217 (711)
T ss_pred             HHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhcc
Confidence            3333 5555555555554433111     0011222222211  12344444444444322 222233344444445555


Q ss_pred             cCCHHHHHHHHHHHHH
Q 045814          387 HGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       387 ~g~~~~A~~~~~~m~~  402 (427)
                      ..++++|++++..+.+
T Consensus       218 ~eN~~eai~Ilk~il~  233 (711)
T COG1747         218 NENWTEAIRILKHILE  233 (711)
T ss_pred             ccCHHHHHHHHHHHhh
Confidence            5555555555554443

>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=86.66  E-value=2.1  Score=23.42  Aligned_cols=29  Identities=17%  Similarity=0.131  Sum_probs=19.8

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEM  167 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~  167 (427)
                      .+|..+..+|...|++++|++.|++..+.
T Consensus         2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~   30 (34)
T PF00515_consen    2 EAYYNLGNAYFQLGDYEEALEYYQRALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHH
Confidence            45666777777777777777777777653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....

>PF13762 MNE1: Mitochondrial splicing apparatus component

Probab=86.37  E-value=14  Score=28.81  Aligned_cols=81  Identities=11%  Similarity=0.123  Sum_probs=44.5

Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLDKG-----YGETTVTYNTLIAGLCLHGR-TDEAYHLFEEMAQKGIFRDVITYNTL  415 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~~~l  415 (427)
                      .|+++......+++.-...+++.+....     -..+..+|+.++.+.....- --.+..+|+-|++.+.+++..-|..+
T Consensus        42 iN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~l  121 (145)
T PF13762_consen   42 INCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSCL  121 (145)
T ss_pred             HHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence            3455555555555555555555443110     01244566666666655444 33455666666666666777777777


Q ss_pred             HHHHHhc
Q 045814          416 IQGYCKE  422 (427)
Q Consensus       416 i~~~~~~  422 (427)
                      |.++.+.
T Consensus       122 i~~~l~g  128 (145)
T PF13762_consen  122 IKAALRG  128 (145)
T ss_pred             HHHHHcC
Confidence            7666554

>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]

Probab=86.04  E-value=23  Score=31.09  Aligned_cols=72  Identities=22%  Similarity=0.211  Sum_probs=57.4

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-----KGIFRDVITYN  413 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~~  413 (427)
                      +++.....|..+|.+.+|.++.+.....+ +.+...|-.++..+...|+--.|.+-++++.+     .|+..|...++
T Consensus       281 llgkva~~yle~g~~neAi~l~qr~ltld-pL~e~~nk~lm~~la~~gD~is~~khyerya~vleaelgi~vddsiee  357 (361)
T COG3947         281 LLGKVARAYLEAGKPNEAIQLHQRALTLD-PLSEQDNKGLMASLATLGDEISAIKHYERYAEVLEAELGIDVDDSIEE  357 (361)
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHhhcC-hhhhHHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHhCCCcchhHHH
Confidence            45666778999999999999999998763 45788899999999999998888888877754     37777665543

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=85.90  E-value=1.1  Score=24.82  Aligned_cols=18  Identities=17%  Similarity=0.185  Sum_probs=7.1

Q ss_pred             hHHHHHHHHHccCCHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDA  323 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a  323 (427)
                      +|+.+...|...|++++|
T Consensus        15 a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   15 AYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHCcCHHhh
Confidence            333333344444443333

>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed

Probab=85.62  E-value=9.3  Score=31.53  Aligned_cols=72  Identities=11%  Similarity=0.030  Sum_probs=37.6

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC---CCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK---GYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~---~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      +.|.+.|-.+...+.--++.....+...|. ..+.+++.+++....+.   +-.+|+..+.+|...|.+.|+++.|
T Consensus       123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A  197 (203)
T PF11207_consen  123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA  197 (203)
T ss_pred             HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence            455555555555544434444444444443 34555666655555433   2245556666666666666666555

>PF13431 TPR_17: Tetratricopeptide repeat

Probab=85.60  E-value=1.1  Score=24.87  Aligned_cols=20  Identities=20%  Similarity=0.164  Sum_probs=9.7

Q ss_pred             HHhHHHHHHHHHhcCChhHH
Q 045814          138 PNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A  157 (427)
                      ..+|+.+...|...|++++|
T Consensus        13 ~~a~~nla~~~~~~g~~~~A   32 (34)
T PF13431_consen   13 AEAYNNLANLYLNQGDYEEA   32 (34)
T ss_pred             HHHHHHHHHHHHHCcCHHhh
Confidence            34444444455555554444

>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A

Probab=84.97  E-value=2.4  Score=24.35  Aligned_cols=27  Identities=19%  Similarity=0.169  Sum_probs=15.9

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHH
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLK  165 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~  165 (427)
                      .+++.|...|...|++++|..++++..
T Consensus         3 ~~~~~la~~~~~~g~~~~A~~~~~~al   29 (42)
T PF13374_consen    3 SALNNLANAYRAQGRYEEALELLEEAL   29 (42)
T ss_dssp             HHHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhhcchhhHHHHHHH
Confidence            355666666666666666666666554

>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia

Probab=83.82  E-value=20  Score=28.46  Aligned_cols=53  Identities=13%  Similarity=-0.011  Sum_probs=31.4

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYT-TVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      -.+.++.+++..++..+.-.  .|...... .-...+...|++.+|..+++++.+.
T Consensus        20 al~~~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~   73 (160)
T PF09613_consen   20 ALRLGDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEER   73 (160)
T ss_pred             HHccCChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence            34566777777777777655  23322221 1223345677777777777776654

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.98  E-value=3.8  Score=22.18  Aligned_cols=29  Identities=28%  Similarity=0.211  Sum_probs=18.6

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhc
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEM  167 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~  167 (427)
                      ..|..+..++...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            34556666777777777777777766653

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]

Probab=82.44  E-value=4.2  Score=22.00  Aligned_cols=29  Identities=21%  Similarity=0.211  Sum_probs=21.8

Q ss_pred             hhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          375 VTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       375 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..|..+...|...|++++|.+.|++..+.
T Consensus         2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l   30 (34)
T PF07719_consen    2 EAWYYLGQAYYQLGNYEEAIEYFEKALEL   30 (34)
T ss_dssp             HHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence            35667778888888888888888887763

It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....

>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.82  E-value=69  Score=33.27  Aligned_cols=37  Identities=16%  Similarity=0.292  Sum_probs=22.1

Q ss_pred             HHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814          191 LVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       191 ~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      +...+++.......|+..|...|+.++|+++|.+..+
T Consensus       496 e~e~~L~k~~~y~~Li~LY~~kg~h~~AL~ll~~l~d  532 (877)
T KOG2063|consen  496 EIETVLKKSKKYRELIELYATKGMHEKALQLLRDLVD  532 (877)
T ss_pred             HHHHHHHhcccHHHHHHHHHhccchHHHHHHHHHHhc
Confidence            3333333333334567777777777777777777665

>TIGR03504 FimV_Cterm FimV C-terminal domain

Probab=81.44  E-value=4.1  Score=24.25  Aligned_cols=22  Identities=23%  Similarity=0.267  Sum_probs=10.6

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..+|...|+.+.|.+++++...
T Consensus         6 A~ayie~Gd~e~Ar~lL~evl~   27 (44)
T TIGR03504         6 ARAYIEMGDLEGARELLEEVIE   27 (44)
T ss_pred             HHHHHHcCChHHHHHHHHHHHH
Confidence            3444444555555555544443

This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.

>PRK09687 putative lyase; Provisional

Probab=81.36  E-value=38  Score=29.98  Aligned_cols=184  Identities=14%  Similarity=0.076  Sum_probs=105.4

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh-----hHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNF-----GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~-----~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                      ++...+..+...  .++..+-...+.+++..+..     ..+...+.....   .++..+-...+.++.+.++ .++...
T Consensus        90 ~a~~~L~~l~~~--D~d~~VR~~A~~aLG~~~~~~~~~~~~a~~~l~~~~~---D~~~~VR~~a~~aLg~~~~-~~ai~~  163 (280)
T PRK09687         90 NVFNILNNLALE--DKSACVRASAINATGHRCKKNPLYSPKIVEQSQITAF---DKSTNVRFAVAFALSVIND-EAAIPL  163 (280)
T ss_pred             HHHHHHHHHHhc--CCCHHHHHHHHHHHhcccccccccchHHHHHHHHHhh---CCCHHHHHHHHHHHhccCC-HHHHHH
Confidence            455555554322  23444444555555544321     223333333222   2355566667777777776 455666


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY  370 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  370 (427)
                      +-.+.+.   +|...-...+.++.+.+ +...+...+..+..   .+|..+-...+.++.+.|+. .|...+-...+.+ 
T Consensus       164 L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~~-~av~~Li~~L~~~-  235 (280)
T PRK09687        164 LINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEAIIGLALRKDK-RVLSVLIKELKKG-  235 (280)
T ss_pred             HHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHHHHHHHccCCh-hHHHHHHHHHcCC-
Confidence            6666553   34444455555666543 23466666666664   34666667778888888874 5555555555542 


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                        +  .....+.++...|.. +|...+..+.+.  .||...-...+.+|.+
T Consensus       236 --~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~~  279 (280)
T PRK09687        236 --T--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLKR  279 (280)
T ss_pred             --c--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHhc
Confidence              2  234677888888885 688888888864  4577777777766643

>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex

Probab=81.09  E-value=64  Score=32.39  Aligned_cols=47  Identities=13%  Similarity=0.178  Sum_probs=28.9

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHh--cCCCCCHHhHHHHHHHHHhc
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDS--TGFSPNPNSLELYIQCLCES  151 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~--~~~~~~~~~~~~li~~~~~~  151 (427)
                      |....=.+|-.|.|+|++++|.++..+  .........+-..+..|...
T Consensus       110 ~~~p~Wa~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s  158 (613)
T PF04097_consen  110 NGDPIWALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASS  158 (613)
T ss_dssp             TTEEHHHHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred             CCCccHHHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence            333444567778899999999888843  23344455666677777664

It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.

>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK

Probab=81.02  E-value=24  Score=27.55  Aligned_cols=51  Identities=16%  Similarity=0.165  Sum_probs=24.7

Q ss_pred             hcCChHHHHHHHHHHHhCCCC-CChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          281 KSRKRLEAYRVFNDLKERGYV-PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       281 ~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ..++++++..+++.|.-.... +...++-  .-.+...|++++|..+++++.+.
T Consensus        22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~d--g~l~i~rg~w~eA~rvlr~l~~~   73 (153)
T TIGR02561        22 RSADPYDAQAMLDALRVLRPNLKELDMFD--GWLLIARGNYDEAARILRELLSS   73 (153)
T ss_pred             hcCCHHHHHHHHHHHHHhCCCccccchhH--HHHHHHcCCHHHHHHHHHhhhcc
Confidence            355666666666665443211 1122222  22234556666666666666554

This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.

>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]

Probab=80.87  E-value=17  Score=30.53  Aligned_cols=77  Identities=14%  Similarity=0.032  Sum_probs=55.5

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC--CCCCChhhHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK--GYGETTVTYNTLIAG  383 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--~~~p~~~~~~~li~~  383 (427)
                      |.+.-++.+.+.+.+.+++.+.++-.+.+ +.|..+-..+++.+|-.|++++|..-++-.-..  ...+-..+|..+|.+
T Consensus         3 Tl~~t~seLL~~~sL~dai~~a~~qVkak-Ptda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~   81 (273)
T COG4455           3 TLRDTISELLDDNSLQDAIGLARDQVKAK-PTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC   81 (273)
T ss_pred             chHHHHHHHHHhccHHHHHHHHHHHHhcC-CccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence            45566778888899999999988877763 225556677888999999999998777665543  223345677777765

>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division

Probab=80.76  E-value=22  Score=27.00  Aligned_cols=59  Identities=15%  Similarity=0.089  Sum_probs=26.8

Q ss_pred             ChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHH
Q 045814           72 DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLD  130 (427)
Q Consensus        72 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  130 (427)
                      |+..+...+..-.....+..+|..|..+.-..--..-|..-...+...|++++|.++++
T Consensus        65 D~RylkiWi~ya~~~~~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~  123 (126)
T PF08311_consen   65 DERYLKIWIKYADLSSDPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ  123 (126)
T ss_dssp             -HHHHHHHHHHHTTBSHHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence            44444443333333335555555554433233334445555555555555555555543

This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.

>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional

Probab=80.43  E-value=27  Score=32.91  Aligned_cols=86  Identities=10%  Similarity=0.039  Sum_probs=40.6

Q ss_pred             hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814          281 KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR  360 (427)
Q Consensus       281 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  360 (427)
                      ..|+++.+...+....+. +-....+..+++....+.|++++|..+-..|....+. ++.........--..|-++++.-
T Consensus       335 ~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~~~a~s~a~~~l~~eie-~~ei~~iaa~sa~~l~~~d~~~~  412 (831)
T PRK15180        335 HLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARWREALSTAEMMLSNEIE-DEEVLTVAAGSADALQLFDKSYH  412 (831)
T ss_pred             HhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhHHHHHHHHHHHhccccC-ChhheeeecccHHHHhHHHHHHH
Confidence            455555555555444322 1113344555555555556666666555555554443 22222222222233445555555


Q ss_pred             HHHHHHHC
Q 045814          361 LHKEMLDK  368 (427)
Q Consensus       361 ~~~~m~~~  368 (427)
                      .|+++...
T Consensus       413 ~wk~~~~~  420 (831)
T PRK15180        413 YWKRVLLL  420 (831)
T ss_pred             HHHHHhcc
Confidence            55555543

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	427
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-17
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	2e-16
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	5e-10
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	4e-07
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	3e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	5e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-06

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 84.1 bits (206), Expect = 2e-17
 Identities = 21/195 (10%), Positives = 55/195 (28%), Gaps = 4/195 (2%)

Query: 232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV 291
           P      +L+     K +                +               + +   A+ +
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 292 FNDLKER---GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG 348
                 +     +    MY  V+ G  + G   +   + F +   GL P+  +Y + +  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQC 209

Query: 349 YCRIDNLEEA-KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR 407
             R D      +R  ++M  +G     +    L++           + +    +      
Sbjct: 210 MGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269

Query: 408 DVITYNTLIQGYCKE 422
             +  + L++    +
Sbjct: 270 PPVNTSKLLRDVYAK 284

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 80.6 bits (197), Expect = 2e-16
 Identities = 17/105 (16%), Positives = 34/105 (32%), Gaps = 3/105 (2%)

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL---HKEMLDKGYGETTVTYNT 379
            +    +     L   +    +        D L  A  L   H     K    T   YN 
Sbjct: 111 EQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNA 170

Query: 380 LIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK 424
           ++ G    G   E  ++   +   G+  D+++Y   +Q   ++ +
Sbjct: 171 VMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 61.0 bits (146), Expect = 5e-10
 Identities = 18/181 (9%), Positives = 50/181 (27%), Gaps = 4/181 (2%)

Query: 194 KLYHDLIESGYLIQAFCNDGKVSEGYELL---RQVLEDGLVPENTAFNKLISRFCEKKNF 250
           +L           +      ++   + LL       +   +     +N ++  +  +  F
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181

Query: 251 GRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY-RVFNDLKERGYVPDTVMYTT 309
             +  +L  +      PD  +Y   +  + +  +      R    + + G     +    
Sbjct: 182 KELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAV 241

Query: 310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG 369
           ++    +   L    K+         LP     + ++      D      +LH  +    
Sbjct: 242 LLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQ 301

Query: 370 Y 370
            
Sbjct: 302 C 302

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 51.4 bits (121), Expect = 4e-07
 Identities = 23/237 (9%), Positives = 64/237 (27%), Gaps = 31/237 (13%)

Query: 133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG---SIKTWNSALLGCIKIDRT 189
             S     L  + +C   +  +  A                 ++  +N+ +         
Sbjct: 122 QLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVM--------- 172

Query: 190 DLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFC-EKK 248
                              +   G   E   +L  V + GL P+  ++   +     + +
Sbjct: 173 -----------------LGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQ 215

Query: 249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT 308
           + G +   L  M              +++   ++      ++V         +P  V  +
Sbjct: 216 DAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTS 275

Query: 309 TVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM 365
            ++  +          K+   +        E   +  +     + ++E+     KE+
Sbjct: 276 KLLRDVYAKDGRVSYPKLHLPL-KTLQCLFEKQLHMELASRVCVVSVEKPTLPSKEV 331

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134

 Score = 45.6 bits (106), Expect = 3e-05
 Identities = 13/92 (14%), Positives = 27/92 (29%), Gaps = 3/92 (3%)

Query: 337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL 396
           P E     ++       +L+  +    +                     L  +   A+HL
Sbjct: 90  PWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHL 149

Query: 397 ---FEEMAQKGIFRDVITYNTLIQGYCKEGKI 425
                   QK     +  YN ++ G+ ++G  
Sbjct: 150 LVVHHGQRQKRKLLTLDMYNAVMLGWARQGAF 181

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 54.1 bits (129), Expect = 5e-08
 Identities = 64/466 (13%), Positives = 149/466 (31%), Gaps = 116/466 (24%)

Query: 21  NPNTQLRNL--SIETKESQQL-----------YTEIAKQVCKITRTKPRWEQTLLSDIPS 67
           +  +    L  ++ +K+ + +           Y  +   +    R +P     +  +   
Sbjct: 59  DAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQR-QPSMMTRMYIEQRD 117

Query: 68  FNFNDPLFFR-------EFLKQQNNVLLSIRFFQW--LHSHYGFSPDLVSCNVLFDSLVE 118
             +ND   F        +   +    LL +R  +   +    G     V+ +V     V+
Sbjct: 118 RLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQ 177

Query: 119 AR-AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSK--LKEMGVFGSIKT 175
            +  FK+   F  +     +P ++   +Q L     I+  + + S           SI+ 
Sbjct: 178 CKMDFKI---FWLNLKNCNSPETVLEMLQKLLY--QIDPNWTSRSDHSSNIKLRIHSIQA 232

Query: 176 WNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAF---C------NDGKVSE---GYELLR 223
               LL     +   LV  L    +++     AF   C         +V++         
Sbjct: 233 ELRRLLKSKPYENCLLV--L--LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTH 288

Query: 224 QVLED---GLVPENTAFNKLISRFCEKKNFG------RVSELLHTMVAR------NRAPD 268
             L+     L P+      L+ ++ + +           +    +++A           D
Sbjct: 289 ISLDHHSMTLTPDEVK--SLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLAT-WD 345

Query: 269 NF---TYEEVINGLCKSRKRLEAY---RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD 322
           N+     +++   +  S   LE     ++F+ L      P +    T++  L  +     
Sbjct: 346 NWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRL---SVFPPSAHIPTIL--LSLI----- 395

Query: 323 ARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE-MLDKGYGETTVTYNTLI 381
               WF++I                   + D +    +LHK  +++K   E+T++  ++ 
Sbjct: 396 ----WFDVI-------------------KSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN 427
             L +    + A H           R ++ +  + + +  +  I  
Sbjct: 433 LELKVKLENEYALH-----------RSIVDHYNIPKTFDSDDLIPP 467

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 49.1 bits (116), Expect = 2e-06
 Identities = 44/309 (14%), Positives = 81/309 (26%), Gaps = 109/309 (35%)

Query: 196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLE----DGLVPENTAFNKL----------- 240
           Y D++       AF ++    +  ++ + +L     D ++    A +             
Sbjct: 18  YKDILS--VFEDAFVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQ 75

Query: 241 ---ISRFCE---KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV--- 291
              + +F E   + N+  +   + T   R  +     Y E  + L    +    Y V   
Sbjct: 76  EEMVQKFVEEVLRINYKFLMSPIKT-EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRL 134

Query: 292 --FNDLKE-------RGYVPDTVMYTTVIHGLCKMG-----WL-GDA-------RKM--- 326
             +  L++          V        +I G   +      W+  D         KM   
Sbjct: 135 QPYLKLRQALLELRPAKNV--------LIDG---VLGSGKTWVALDVCLSYKVQCKMDFK 183

Query: 327 --W------------FEMIHKGLLPNEYTYNSMIHGYCRI-DNLEEAK-RLHKEMLDKGY 370
             W             EM+ K L   +  + S       I   +   +  L + +  K Y
Sbjct: 184 IFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPY 243

Query: 371 GE-------------------------TT----VTYNTLIAGLCLHGRTDEAYHLFEEMA 401
                                      TT    VT + L A    H   D          
Sbjct: 244 ENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVT-DFLSAATTTHISLDHHSMTLTPDE 302

Query: 402 QKGIFRDVI 410
            K +    +
Sbjct: 303 VKSLLLKYL 311

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	427
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
4g26_A	501	Pentatricopeptide repeat-containing protein AT2G3	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
2xpi_A	597	Anaphase-promoting complex subunit CUT9; cell cycl	100.0
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
1w3b_A	388	UDP-N-acetylglucosamine--peptide N-acetylglucosami	99.96
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2y4t_A	450	DNAJ homolog subfamily C member 3; chaperone, endo	99.91
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.89
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.87
2gw1_A	514	Mitochondrial precursor proteins import receptor;	99.86
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.84
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.84
3ieg_A	359	DNAJ homolog subfamily C member 3; TPR motif, chap	99.83
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
3fp2_A	537	TPR repeat-containing protein YHR117W; TOM71, mito	99.82
3hym_B	330	Cell division cycle protein 16 homolog; APC, anaph	99.82
3spa_A	1134	Mtrpol, DNA-directed RNA polymerase, mitochondrial	99.82
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.81
1fch_A	368	Peroxisomal targeting signal 1 receptor; protein-p	99.8
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.79
4eqf_A	365	PEX5-related protein; accessory protein, tetratric	99.78
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.77
3cv0_A	327	Peroxisome targeting signal 1 receptor PEX5; TPR m	99.76
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.76
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.73
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.72
2xm6_A	490	Protein corresponding to locus C5321 from CFT073 s	99.72
1b89_A	449	Protein (clathrin heavy chain); triskelion, coated	99.71
3mkr_A	291	Coatomer subunit epsilon; tetratricopeptide repeat	99.71
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.69
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.68
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.67
3uq3_A	258	Heat shock protein STI1; HSP90, peptide binding, c	99.66
4g1t_A	472	Interferon-induced protein with tetratricopeptide	99.65
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
2pl2_A	217	Hypothetical conserved protein TTC0263; TPR, prote	99.6
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.59
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.59
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.58
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.58
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.58
2ooe_A	530	Cleavage stimulation factor 77 kDa subunit; HAT do	99.57
1ouv_A	273	Conserved hypothetical secreted protein; TPR repea	99.57
2ho1_A	252	Type 4 fimbrial biogenesis protein PILF; type IV p	99.57
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.56
2vq2_A	225	PILW, putative fimbrial biogenesis and twitching m	99.56
1xi4_A	1630	Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle	99.56
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.56
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.55
3u4t_A	272	TPR repeat-containing protein; structural genomics	99.55
2h6f_A	382	Protein farnesyltransferase/geranylgeranyltransfer	99.54
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.54
2q7f_A	243	YRRB protein; TPR, protein binding; 2.49A {Bacillu	99.52
3sf4_A	406	G-protein-signaling modulator 2; tetratricopeptide	99.52
1xnf_A	275	Lipoprotein NLPI; TPR, tetratricopeptide, structur	99.52
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.5
4a1s_A	411	PINS, partner of inscuteable; cell cycle, LGN, mit	99.48
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.48
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.47
3ro2_A	338	PINS homolog, G-protein-signaling modulator 2; TPR	99.46
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.46
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.44
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.41
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.4
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.39
3vtx_A	184	MAMA; tetratricopeptide repeats (TPR) containing p	99.38
2ond_A	308	Cleavage stimulation factor 77 kDa subunit; HAT do	99.37
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.36
4abn_A	474	Tetratricopeptide repeat protein 5; P53 cofactor,	99.35
3ulq_A	383	Response regulator aspartate phosphatase F; tetrat	99.34
3nf1_A	311	KLC 1, kinesin light chain 1; TPR, structural geno	99.34
3e4b_A	452	ALGK; tetratricopeptide repeat, superhelix, algina	99.34
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.32
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.28
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.27
1hz4_A	373	MALT regulatory protein; two-helix bundles, helix	99.27
3q15_A	378	PSP28, response regulator aspartate phosphatase H;	99.26
3as5_A	186	MAMA; tetratricopeptide repeats (TPR) containing p	99.24
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.23
3edt_B	283	KLC 2, kinesin light chain 2; superhelical, struct	99.22
4gyw_A	723	UDP-N-acetylglucosamine--peptide N- acetylglucosam	99.18
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.12
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	99.12
4i17_A	228	Hypothetical protein; TPR repeats protein, structu	99.11
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.1
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.09
1qqe_A	292	Vesicular transport protein SEC17; helix-turn-heli	99.08
2fo7_A	136	Synthetic consensus TPR protein; tetratricopeptide	99.03
4e6h_A	679	MRNA 3'-END-processing protein RNA14; HAT domain,	99.03
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.98
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.98
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.98
3mv2_B	310	Coatomer subunit epsilon; vesicular membrane coat	98.97
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.94
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.93
3qky_A	261	Outer membrane assembly lipoprotein YFIO; membrane	98.93
3urz_A	208	Uncharacterized protein; tetratricopeptide repeats	98.92
2ifu_A	307	Gamma-SNAP; membrane fusion, snare complex disasse	98.92
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.88
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.88
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.88
4ga2_A	150	E3 SUMO-protein ligase ranbp2; TPR motif, nuclear	98.87
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.85
2vsy_A	568	XCC0866; transferase, glycosyl transferase, GT-B,	98.85
2r5s_A	176	Uncharacterized protein VP0806; APC090868.1, vibri	98.84
3dra_A	306	Protein farnesyltransferase/geranylgeranyltransfer	98.82
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.82
2pzi_A	681	Probable serine/threonine-protein kinase PKNG; ATP	98.82
2yhc_A	225	BAMD, UPF0169 lipoprotein YFIO; essential BAM comp	98.81
3rjv_A	212	Putative SEL1 repeat protein; alpha-alpha superhel	98.78
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.77
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.77
3qou_A	287	Protein YBBN; thioredoxin-like fold, tetratricopep	98.72
1hh8_A	213	P67PHOX, NCF-2, neutrophil cytosol factor 2; cell	98.69
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.69
3u3w_A	293	Transcriptional activator PLCR protein; ternary co	98.68
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.66
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.64
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.63
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.6
2qfc_A	293	PLCR protein; TPR, HTH, transcription regulation;	98.6
2uy1_A	493	Cleavage stimulation factor 77; RNA-binding protei	98.58
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.58
1a17_A	166	Serine/threonine protein phosphatase 5; hydrolase,	98.57
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.56
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.56
3gw4_A	203	Uncharacterized protein; structural genomics, PSI-	98.55
1na0_A	125	Designed protein CTPR3; de novo protein; HET: IPT;	98.55
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.55
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.53
4gco_A	126	Protein STI-1; structural genomics, PSI-biology, m	98.52
2e2e_A	177	Formate-dependent nitrite reductase complex NRFG;	98.52
2vyi_A	131	SGTA protein; chaperone, TPR repeat, phosphoprotei	98.5
2lni_A	133	Stress-induced-phosphoprotein 1; structural genomi	98.5
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.5
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.47
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.47
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.46
1p5q_A	336	FKBP52, FK506-binding protein 4; isomerase; 2.80A	98.46
4f3v_A	282	ESX-1 secretion system protein ECCA1; tetratricope	98.45
3gyz_A	151	Chaperone protein IPGC; asymmetric homodimer, tetr	98.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.42
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.42
2vgx_A	148	Chaperone SYCD; alternative dimer assembly, tetrat	98.38
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.37
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.32
3q7a_A	349	Farnesyltransferase alpha subunit; protein prenylt	98.31
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.3
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.29
1elw_A	118	TPR1-domain of HOP; HOP, TPR-domain, peptide-compl	98.29
4gcn_A	127	Protein STI-1; structural genomics, PSI-biology, m	98.29
3upv_A	126	Heat shock protein STI1; TPR-fold, adaptor protein	98.28
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.26
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.26
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.25
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.24
2kck_A	112	TPR repeat; tetratricopeptide repeat, structural g	98.24
2fbn_A	198	70 kDa peptidylprolyl isomerase, putative; sulfur	98.24
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.23
4b4t_Q	434	26S proteasome regulatory subunit RPN6; hydrolase,	98.21
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.21
3q49_B	137	STIP1 homology and U box-containing protein 1; E3	98.2
2xcb_A	142	PCRH, regulatory protein PCRH; protein transport,	98.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.2
3sz7_A	164	HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G	98.18
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.18
1elr_A	131	TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp	98.16
2dba_A	148	Smooth muscle cell associated protein-1, isoform 2	98.16
3ro3_A	164	PINS homolog, G-protein-signaling modulator 2; asy	98.14
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.09
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.06
1wao_1	477	Serine/threonine protein phosphatase 5; hydrolase,	98.05
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.04
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	98.04
3dss_A	331	Geranylgeranyl transferase type-2 subunit alpha; p	98.03
1hxi_A	121	PEX5, peroxisome targeting signal 1 receptor PEX5;	98.03
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	98.03
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	98.0
3k9i_A	117	BH0479 protein; putative protein binding protein,	98.0
2xev_A	129	YBGF; tetratricopeptide, alpha-helical, metal bind	97.96
1kt0_A	457	FKBP51, 51 kDa FK506-binding protein; FKBP-like pp	97.95
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.95
3k9i_A	117	BH0479 protein; putative protein binding protein,	97.94
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.92
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.91
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.86
1ihg_A	370	Cyclophilin 40; ppiase immunophilin tetratricopept	97.85
3rkv_A	162	Putative peptidylprolyl isomerase; structural geno	97.84
3n71_A	490	Histone lysine methyltransferase SMYD1; heart deve	97.8
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	97.77
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.75
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.74
2hr2_A	159	Hypothetical protein; alpha-alpha superhelix fold,	97.73
2if4_A	338	ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha,	97.72
1klx_A	138	Cysteine rich protein B; structural genomics, heli	97.68
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.53
2l6j_A	111	TPR repeat-containing protein associated with HSP;	97.43
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.41
2kat_A	115	Uncharacterized protein; NESG, structure, structur	97.38
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.34
1na3_A	91	Designed protein CTPR2; de novo protein; HET: IPT;	97.34
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.21
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.2
1zu2_A	158	Mitochondrial import receptor subunit TOM20-3; TPR	97.19
3ma5_A	100	Tetratricopeptide repeat domain protein; NESG, str	97.09
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	97.04
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.98
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.91
3qww_A	433	SET and MYND domain-containing protein 2; methyltr	96.76
3qwp_A	429	SET and MYND domain-containing protein 3; SMYD3,SE	96.71
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	96.69
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.55
3mkq_A	814	Coatomer beta'-subunit; beta-propeller, alpha-sole	96.44
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	96.26
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	96.25
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	96.22
3ly7_A	372	Transcriptional activator CADC; alpha/beta domain,	96.2
1wy6_A	172	Hypothetical protein ST1625; helical repeat protei	95.98
3mkq_B	177	Coatomer subunit alpha; beta-propeller, alpha-sole	95.95
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.92
2kc7_A	99	BFR218_protein; tetratricopeptide repeat, all-alph	95.89
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.71
3bee_A	93	Putative YFRE protein; putaive YFRE protein, struc	95.39
1pc2_A	152	Mitochondria fission protein; unknown function; NM	95.33
3u64_A	301	Protein TP_0956; tetratrico peptide repeat, protei	95.31
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	95.13
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.83
2v5f_A	104	Prolyl 4-hydroxylase subunit alpha-1; endoplasmic	94.44
4h7y_A	161	Dual specificity protein kinase TTK; mitotic check	94.38
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	94.36
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	93.53
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.87
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	92.83
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	92.8
2ff4_A	388	Probable regulatory protein EMBR; winged-helix, te	92.73
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	92.6
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.53
4b4t_P	445	26S proteasome regulatory subunit RPN5; hydrolase,	92.4
1v54_E	109	Cytochrome C oxidase polypeptide VA; oxidoreductas	92.33
4ady_A	963	RPN2, 26S proteasome regulatory subunit RPN2; prot	91.9
1nzn_A	126	CGI-135 protein, fission protein FIS1P; TPR, unkno	91.56
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	91.2
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	90.89
2y69_E	152	Cytochrome C oxidase subunit 5A; electron transpor	89.75
3lvg_A	624	Clathrin heavy chain 1; SELF assembly, coated PIT,	89.64
4gns_B	754	Protein CSD3, chitin biosynthesis protein CHS6; FN	89.51
4fhn_B	1139	Nucleoporin NUP120; protein complex,structural pro	88.82
3lpz_A	336	GET4 (YOR164C homolog); protein targeting, tail-an	87.26
3o48_A	134	Mitochondria fission 1 protein; tetratricopeptide	86.62
2wpv_A	312	GET4, UPF0363 protein YOR164C; golgi-ER traffickin	85.43
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	85.27
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	83.83
1y8m_A	144	FIS1; mitochondria, unknown function; NMR {Sacchar	83.31
1qsa_A	618	Protein (soluble lytic transglycosylase SLT70); al	82.45
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	81.67
1zbp_A	273	Hypothetical protein VPA1032; alpha-beta protein,	81.37
4b4t_R	429	RPN7, 26S proteasome regulatory subunit RPN7; hydr	80.5

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=8.4e-35  Score=276.22  Aligned_cols=206  Identities=12%  Similarity=0.155  Sum_probs=182.8

Q ss_pred             HHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC---------hH
Q 045814          217 EGYELLRQVLEDGLVPEN-TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK---------RL  286 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~  286 (427)
                      .+..+.+++.+.+..+.+ ..++.+|++|++.|++++|.++|++|.+.|+.||..||+.||.+|++.+.         .+
T Consensus         8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~   87 (501)
T 4g26_A            8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS   87 (501)
T ss_dssp             ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred             hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence            445566677766665443 46888999999999999999999999999999999999999999987765         68


Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      +|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.
T Consensus        88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~  167 (501)
T 4g26_A           88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV  167 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence            89999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhc
Q 045814          367 DKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKE  422 (427)
Q Consensus       367 ~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~  422 (427)
                      +.|+.||..+|++||.+|++.|++++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus       168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~  223 (501)
T 4g26_A          168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE  223 (501)
T ss_dssp             HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred             hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999875

>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A

Probab=100.00  E-value=1.3e-32  Score=261.25  Aligned_cols=207  Identities=14%  Similarity=0.191  Sum_probs=175.2

Q ss_pred             hHHHHHHHHHHhcCCCcCHh-hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814          155 EEAFCAFSKLKEMGVFGSIK-TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE  233 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  233 (427)
                      ..+..+..++.+.+..+.+. .++.+                          +.+|++.|++++|+++|++|.+.|+.||
T Consensus         7 s~~e~L~~~~~~k~~~~spe~~l~~~--------------------------id~c~k~G~~~~A~~lf~~M~~~Gv~pd   60 (501)
T 4g26_A            7 SPSENLSRKAKKKAIQQSPEALLKQK--------------------------LDMCSKKGDVLEALRLYDEARRNGVQLS   60 (501)
T ss_dssp             -----------------CHHHHHHHH--------------------------HHHTTTSCCHHHHHHHHHHHHHHTCCCC
T ss_pred             chHHHHHHHHHHhcccCCCHHHHHHH--------------------------HHHHHhCCCHHHHHHHHHHHHHcCCCCC
Confidence            34555666777666654433 34444                          4555667777777788888888999999


Q ss_pred             HHHHHHHHHHHHccCC---------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814          234 NTAFNKLISRFCEKKN---------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT  304 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~---------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~  304 (427)
                      ..|||+||.+|++.+.         ++.|.++|++|...|+.||..||+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus        61 ~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~  140 (501)
T 4g26_A           61 QYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRL  140 (501)
T ss_dssp             HHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCH
T ss_pred             HhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCcc
Confidence            9999999999987665         6789999999999999999999999999999999999999999999999999999


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL  384 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  384 (427)
                      .+|+++|.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||+.++..|
T Consensus       141 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F  220 (501)
T 4g26_A          141 RSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWF  220 (501)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHH
T ss_pred             ceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             Hhc
Q 045814          385 CLH  387 (427)
Q Consensus       385 ~~~  387 (427)
                      +..
T Consensus       221 ~s~  223 (501)
T 4g26_A          221 KSE  223 (501)
T ss_dssp             HSH
T ss_pred             hcC
Confidence            864

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=4.4e-30  Score=252.37  Aligned_cols=344  Identities=8%  Similarity=-0.024  Sum_probs=286.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-----------------CC
Q 045814           75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-----------------SP  136 (427)
Q Consensus        75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-----------------~~  136 (427)
                      .+...+...+++..|+.+|+.+..   ..++..+++.++.+|.+.|++++|.++|++. +.                 .+
T Consensus       122 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (597)
T 2xpi_A          122 WLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKL  198 (597)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCH
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccch
Confidence            344566778999999999998853   3688999999999999999999999999963 21                 12


Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCC-----------------------------------------------
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGV-----------------------------------------------  169 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-----------------------------------------------  169 (427)
                      +..+|+.++.+|.+.|++++|.++|++|.+.+.                                               
T Consensus       199 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~  278 (597)
T 2xpi_A          199 EASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLK  278 (597)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTT
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHH
Confidence            478999999999999999999999999876542                                               


Q ss_pred             -----------------------CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHH
Q 045814          170 -----------------------FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEG  218 (427)
Q Consensus       170 -----------------------~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a  218 (427)
                                             .++..+++.++.+|.+.|++++|..+|+++.+.+        .++.++.+.|++++|
T Consensus       279 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  358 (597)
T 2xpi_A          279 LNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVYPLHLASLHESGEKNKL  358 (597)
T ss_dssp             SCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTHHHHHHHHHHHTCHHHH
T ss_pred             HHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHHHHHHHHHHHhCCHHHH
Confidence                                   1566778888888888888888888888887643        377788888888888


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER  298 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  298 (427)
                      .++++++..... .+..+++.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus       359 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~  436 (597)
T 2xpi_A          359 YLISNDLVDRHP-EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARL  436 (597)
T ss_dssp             HHHHHHHHHHCT-TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHhhCc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            888888876543 377888899999999999999999999988764 235778999999999999999999999999877


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-
Q 045814          299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET-  373 (427)
Q Consensus       299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-  373 (427)
                      +.. +..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..|.+.|++++|.++|+++.+.    +..|+ 
T Consensus       437 ~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~  514 (597)
T 2xpi_A          437 FQG-THLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKP  514 (597)
T ss_dssp             TTT-CSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGG
T ss_pred             Ccc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhh
Confidence            543 77889999999999999999999999998764 336788999999999999999999999998775    66777 


Q ss_pred             -hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          374 -TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       374 -~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                       ..+|..++.+|.+.|++++|.++|+++.+.+ +.+..+|..+..+|.+.|+++
T Consensus       515 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~  567 (597)
T 2xpi_A          515 WAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPG  567 (597)
T ss_dssp             GHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHH
Confidence             6789999999999999999999999988865 337889999999999999875

>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}

Probab=100.00  E-value=2.2e-30  Score=254.49  Aligned_cols=340  Identities=10%  Similarity=-0.033  Sum_probs=260.1

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHH
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A  157 (427)
                      .+.+.+++..|+.+|+.+..   ..|+..++..++.+|.+.|++++|..+|+++ ...++..+++.++.+|.+.|++++|
T Consensus        93 ~~~~~g~~~~A~~~~~~~~~---~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A  169 (597)
T 2xpi_A           93 DALMQQQYKCAAFVGEKVLD---ITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLYNRSSACRYLAAFCLVKLYDWQGA  169 (597)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH---HHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGGGTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHccCchHHHHHHHHHHh---hCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhccccchhHHHHHHHHHHHHhhHHHH
Confidence            44567999999999999964   4688899999999999999999999999985 4578899999999999999999999


Q ss_pred             HHHHHHHH-hc--------------CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcch------------------
Q 045814          158 FCAFSKLK-EM--------------GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGY------------------  204 (427)
Q Consensus       158 ~~~~~~m~-~~--------------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------------------  204 (427)
                      .++|+++. ..              |..++..+|+.++.+|.+.|++++|.++|+++.+.+.                  
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~  249 (597)
T 2xpi_A          170 LNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLVSNHLLTAD  249 (597)
T ss_dssp             HHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCSCHH
T ss_pred             HHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHHHhhcccch
Confidence            99999532 21              2344688999999999999999999999999876431                  


Q ss_pred             ----------------------------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHH
Q 045814          205 ----------------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSEL  256 (427)
Q Consensus       205 ----------------------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~  256 (427)
                                                  ++..|.+.|++++|.++|+++...  .++..+++.++.+|.+.|++++|.++
T Consensus       250 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~  327 (597)
T 2xpi_A          250 EEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAI  327 (597)
T ss_dssp             HHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             hHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHH
Confidence                                        033344555566666666655543  24555666666666666666666666


Q ss_pred             HHHHhhCCC---------------------------------CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC
Q 045814          257 LHTMVARNR---------------------------------APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD  303 (427)
Q Consensus       257 ~~~m~~~~~---------------------------------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~  303 (427)
                      |+++.+.+.                                 +.+..+++.++..|.+.|++++|.++|+++.+.... +
T Consensus       328 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~  406 (597)
T 2xpi_A          328 TTKILEIDPYNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQ-F  406 (597)
T ss_dssp             HHHHHHHCTTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred             HHHHHHcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-C
Confidence            665554321                                 234667777778888888888888888887765332 5


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG  383 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  383 (427)
                      ..+|+.++.+|.+.|++++|.++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++..
T Consensus       407 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~  484 (597)
T 2xpi_A          407 GPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVV  484 (597)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH
Confidence            6688888888888888888888888887764 3367788888888888888888888888887753 3367888888888


Q ss_pred             HHhcCCHHHHHHHHHHHHHC----CCCCC--HhHHHHHHHHHHhcCCCC
Q 045814          384 LCLHGRTDEAYHLFEEMAQK----GIFRD--VITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       384 ~~~~g~~~~A~~~~~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~  426 (427)
                      |.+.|++++|.++|+++.+.    +..|+  ..+|..+..+|.+.|+++
T Consensus       485 ~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~  533 (597)
T 2xpi_A          485 AFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYD  533 (597)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHH
T ss_pred             HHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHH
Confidence            88888888888888888776    66777  678888888888888765

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.9e-24  Score=200.70  Aligned_cols=366  Identities=14%  Similarity=0.057  Sum_probs=303.1

Q ss_pred             cccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHH
Q 045814           37 QQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL  116 (427)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  116 (427)
                      ...+.+....+.+.+...|+....+            ..+..++...++.+.|..+++.+...  .+.+..+|..+...+
T Consensus        12 ~g~~~~A~~~~~~~~~~~p~~~~~~------------~~l~~~~~~~~~~~~a~~~~~~a~~~--~p~~~~~~~~lg~~~   77 (388)
T 1w3b_A           12 AGDFEAAERHCMQLWRQEPDNTGVL------------LLLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVY   77 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHH------------HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHhCCCCHHHH------------HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHH
Confidence            3455566665555555555433221            24455667789999999999988664  355788999999999


Q ss_pred             HHcCChHHHHHHHHhc-CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHH
Q 045814          117 VEARAFKVAMDFLDST-GFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWK  194 (427)
Q Consensus       117 ~~~~~~~~a~~~~~~~-~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~  194 (427)
                      .+.|++++|.+.|++. ...|+ ..+|..+..++.+.|++++|.+.|+++.+.... +...+..+...+...|++++|..
T Consensus        78 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~  156 (388)
T 1w3b_A           78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKA  156 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHH
Confidence            9999999999999973 44454 568999999999999999999999999986533 56677888899999999999999


Q ss_pred             HHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC
Q 045814          195 LYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA  266 (427)
Q Consensus       195 ~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~  266 (427)
                      .|+++.+..        .+...+...|++++|...|+++...... +...|..+...+...|++++|...+++...... 
T Consensus       157 ~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-  234 (388)
T 1w3b_A          157 CYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-  234 (388)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence            999988753        3778889999999999999999986544 677899999999999999999999999887743 


Q ss_pred             CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      .+..++..+...|.+.|++++|...|+++.+.+.. +..+|..+...+.+.|++++|...++++.+.. +.+..++..+.
T Consensus       235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~  312 (388)
T 1w3b_A          235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA  312 (388)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence            25788999999999999999999999999987543 56789999999999999999999999999874 45788999999


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DVITYNTLIQGYCKEGK  424 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~li~~~~~~g~  424 (427)
                      ..+...|++++|...++++.+.. +.+..++..+...|.+.|++++|.+.|+++.+.  .| +...|..+-..+.+.|+
T Consensus       313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~a~~~lg~~~~~~~~  388 (388)
T 1w3b_A          313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHhHHHHHHHccC
Confidence            99999999999999999998763 346789999999999999999999999999875  44 45677777777766653

>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1

Probab=99.96  E-value=1.3e-24  Score=201.93  Aligned_cols=341  Identities=12%  Similarity=0.015  Sum_probs=294.0

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCCHHhHHHHHHHHHhcCChh
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPNPNSLELYIQCLCESGLIE  155 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~~~~~~~li~~~~~~~~~~  155 (427)
                      ..+...++++.|++.+..+...  .+.+...+..+...+...|++++|...++..  ..+.+..+|..+...|.+.|+++
T Consensus         7 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~   84 (388)
T 1w3b_A            7 HREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQ   84 (388)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHH
Confidence            3445689999999999988654  2345667778888889999999999999862  23456889999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHH
Q 045814          156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      +|.+.|+++.+.... +..+|..+..++...|++++|...|+++.+.+        .+...+...|++++|.+.|+++..
T Consensus        85 ~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~  163 (388)
T 1w3b_A           85 EAIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIE  163 (388)
T ss_dssp             HHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            999999999986433 56789999999999999999999999998764        367788889999999999999998


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY  307 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  307 (427)
                      .... +..+|..+...+...|++++|...|+++.+.+. .+...+..+...+...|++++|...|++..+.... +..++
T Consensus       164 ~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~  240 (388)
T 1w3b_A          164 TQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDP-NFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-HAVVH  240 (388)
T ss_dssp             HCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-CHHHH
T ss_pred             hCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcC-CHHHH
Confidence            6543 678999999999999999999999999998753 35678999999999999999999999999876533 57889


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      ..+...+.+.|++++|...++++.+.+. .+..+|..+...+.+.|++++|.+.++++.+. .+.+..+|..+...+...
T Consensus       241 ~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~  318 (388)
T 1w3b_A          241 GNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRL-CPTHADSLNNLANIKREQ  318 (388)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHc
Confidence            9999999999999999999999998742 25678999999999999999999999999987 345788999999999999


Q ss_pred             CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCCC
Q 045814          388 GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIVN  427 (427)
Q Consensus       388 g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~e  427 (427)
                      |++++|.+.++++.+.. +.+..++..+...+.+.|++++
T Consensus       319 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~  357 (388)
T 1w3b_A          319 GNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQE  357 (388)
T ss_dssp             TCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHH
T ss_pred             CCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHH
Confidence            99999999999998752 3357899999999999998763

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=2.3e-20  Score=176.51  Aligned_cols=342  Identities=10%  Similarity=0.060  Sum_probs=267.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCC-CCHHhHHHHHHHHHhcCC
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFS-PNPNSLELYIQCLCESGL  153 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~li~~~~~~~~  153 (427)
                      +...+...+++..|+.+|+.+...  .+.+..++..+...+...|++++|...+++. ... .+..++..+..+|.+.|+
T Consensus        32 ~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~  109 (450)
T 2y4t_A           32 LGKKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMDFTAARLQRGHLLLKQGK  109 (450)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCC
Confidence            344566789999999999998764  3457889999999999999999999999873 223 357789999999999999


Q ss_pred             hhHHHHHHHHHHhcCCCcCH---hhHHHH------------HHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHH
Q 045814          154 IEEAFCAFSKLKEMGVFGSI---KTWNSA------------LLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFC  210 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~---~~~~~l------------l~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~  210 (427)
                      +++|.+.|+++.+.... +.   ..+..+            ...+...|++++|...|+.+.+..        .+...|.
T Consensus       110 ~~~A~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~  188 (450)
T 2y4t_A          110 LDEAEDDFKKVLKSNPS-ENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVWDAELRELRAECFI  188 (450)
T ss_dssp             HHHHHHHHHHHHTSCCC-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCC-ChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence            99999999999886433 33   555555            444889999999999999988753        3788899


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHH------------HHH
Q 045814          211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEV------------ING  278 (427)
Q Consensus       211 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l------------l~~  278 (427)
                      ..|++++|.+.|+++...... +..++..+...|...|++++|...++++...... +...+..+            ...
T Consensus       189 ~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~~~~~~~~~  266 (450)
T 2y4t_A          189 KEGEPRKAISDLKAASKLKND-NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEE  266 (450)
T ss_dssp             HTTCGGGGHHHHHHHHHHHCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999876433 6789999999999999999999999999876422 34444444            788


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPD-----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID  353 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  353 (427)
                      +.+.|++++|...|+++.+..  |+     ...|..+...+.+.|++++|...++++.+.. +.+..++..+..+|...|
T Consensus       267 ~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~  343 (450)
T 2y4t_A          267 LIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEE  343 (450)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhc
Confidence            999999999999999998753  34     3478888999999999999999999998763 336788999999999999


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHCC--CCCC-----
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAG------------LCLHG-----RTDEAYHLFEEM-AQKG--IFRD-----  408 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~------------~~~~g-----~~~~A~~~~~~m-~~~g--~~p~-----  408 (427)
                      ++++|...++++.+... -+...+..+..+            |...|     +.+++.+.|+++ .+..  ..|+     
T Consensus       344 ~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~~~~~~  422 (450)
T 2y4t_A          344 MYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQNEEEKK  422 (450)
T ss_dssp             CHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCSHHHHH
T ss_pred             CHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCCchHHH
Confidence            99999999999988532 245566666532            33344     567778888763 3321  1122     


Q ss_pred             --HhHHHHHHHHHHhcCCCC
Q 045814          409 --VITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       409 --~~~~~~li~~~~~~g~~~  426 (427)
                        ...+..+..+|...|+.+
T Consensus       423 ~a~~~~~~i~~ay~~L~d~~  442 (450)
T 2y4t_A          423 KAEKKFIDIAAAKEVLSDPE  442 (450)
T ss_dssp             HHHHHHHHHHHHHHHSSGGG
T ss_pred             HHHHHHHHHHHHHHHhCCHH
Confidence              237788888888877654

>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A

Probab=99.91  E-value=8.8e-21  Score=179.43  Aligned_cols=305  Identities=11%  Similarity=0.051  Sum_probs=258.6

Q ss_pred             CCCHhhHHHHHHHHHHcCChHHHHHHHHhc-C-CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 045814          103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST-G-FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSAL  180 (427)
Q Consensus       103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~-~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll  180 (427)
                      +.+...+..+...+.+.|++++|..+|+++ . .+.+..+|..+..+|...|++++|...|+++.+.+.. +..++..+.
T Consensus        23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~  101 (450)
T 2y4t_A           23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRG  101 (450)
T ss_dssp             CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHH
Confidence            346778899999999999999999999973 2 2446889999999999999999999999999987644 688999999


Q ss_pred             HHHHHcCChhHHHHHHHHHHhcch-----------------------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 045814          181 LGCIKIDRTDLVWKLYHDLIESGY-----------------------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF  237 (427)
Q Consensus       181 ~~~~~~~~~~~a~~~~~~~~~~~~-----------------------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  237 (427)
                      .+|.+.|++++|...|+.+.+.+.                       +...+...|++++|...++++...... +..++
T Consensus       102 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~  180 (450)
T 2y4t_A          102 HLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW-DAELR  180 (450)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHH
Confidence            999999999999999999976531                       144588999999999999999986543 78899


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH-------
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV-------  310 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l-------  310 (427)
                      ..+..+|.+.|++++|.+.|+++.+.. +.+..++..+...|...|++++|...|+++.+.... +...+..+       
T Consensus       181 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~~~~~~~~~  258 (450)
T 2y4t_A          181 ELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLN  258 (450)
T ss_dssp             HHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHH
Confidence            999999999999999999999998764 346789999999999999999999999999876432 34445444       


Q ss_pred             -----HHHHHccCCHHHHHHHHHHHHHcCCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814          311 -----IHGLCKMGWLGDARKMWFEMIHKGLLPN-----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL  380 (427)
Q Consensus       311 -----i~~~~~~g~~~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  380 (427)
                           ...|.+.|++++|...++++.+.  .|+     ...+..+..++.+.|++++|...++++.+.. +.+...|..+
T Consensus       259 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l  335 (450)
T 2y4t_A          259 KLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDR  335 (450)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHH
Confidence                 78899999999999999999986  344     3478888999999999999999999998763 3368999999


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHH
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLI  416 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li  416 (427)
                      ..+|...|++++|.+.++++.+.  .|+ ...+..+-
T Consensus       336 ~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~  370 (450)
T 2y4t_A          336 AEAYLIEEMYDEAIQDYETAQEH--NENDQQIREGLE  370 (450)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTT--SSSCHHHHHHHH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence            99999999999999999999984  454 44454444

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.89  E-value=3.1e-20  Score=178.56  Aligned_cols=341  Identities=11%  Similarity=0.007  Sum_probs=259.0

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCCh
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLI  154 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~  154 (427)
                      ...+...+++..|+..|+.+...   .|+..+|..+..++.+.|++++|...+++. ...| +..+|..+..+|.+.|++
T Consensus        13 g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~   89 (514)
T 2gw1_A           13 GNQFFRNKKYDDAIKYYNWALEL---KEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKF   89 (514)
T ss_dssp             HHHHHHTSCHHHHHHHHHHHHHH---CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhc---CccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhH
Confidence            34555678889999999988764   378888988999999999999999988862 3334 467888888999999999


Q ss_pred             hHHHHHHHHHHhcCCCcC--------------------------------------------------------------
Q 045814          155 EEAFCAFSKLKEMGVFGS--------------------------------------------------------------  172 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~--------------------------------------------------------------  172 (427)
                      ++|...|+++.+.+...+                                                              
T Consensus        90 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  169 (514)
T 2gw1_A           90 ADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFG  169 (514)
T ss_dssp             HHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHT
T ss_pred             HHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHh
Confidence            999999988876543110                                                              


Q ss_pred             ----------------HhhHHHHHHHHHH---cCChhHHHHHHHHHHh-----c-----------------chhHHHHHh
Q 045814          173 ----------------IKTWNSALLGCIK---IDRTDLVWKLYHDLIE-----S-----------------GYLIQAFCN  211 (427)
Q Consensus       173 ----------------~~~~~~ll~~~~~---~~~~~~a~~~~~~~~~-----~-----------------~~l~~~~~~  211 (427)
                                      ...+......+..   .|++++|...|+++.+     .                 ..+...+..
T Consensus       170 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (514)
T 2gw1_A          170 IFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFL  249 (514)
T ss_dssp             TSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHH
Confidence                            2222223333333   7888899998888877     2                 126677888


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814          212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                      .|++++|...++++......  ..++..+...+...|++++|...++++.+... .+..++..+...|...|++++|...
T Consensus       250 ~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~  326 (514)
T 2gw1_A          250 KNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSSVYYHRGQMNFILQNYDQAGKD  326 (514)
T ss_dssp             SSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTHHHHHHHHHHHHTTCTTHHHHH
T ss_pred             CCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHHHHHHHHHHHHHhCCHHHHHHH
Confidence            89999999999988876544  77888888888889999999999988887643 3566788888888889999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG  371 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  371 (427)
                      |+++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...++.+.+....
T Consensus       327 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~  404 (514)
T 2gw1_A          327 FDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENK  404 (514)
T ss_dssp             HHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhc
Confidence            9888876544 56678888888888899999999988888763 225667888888888889999999888888764211


Q ss_pred             -CC----hhhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          372 -ET----TVTYNTLIAGLCL---HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       372 -p~----~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                       ++    ...|..+...|..   .|++++|.+.++++.+.. +.+..++..+...|.+.|+++
T Consensus       405 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~  466 (514)
T 2gw1_A          405 LDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDID  466 (514)
T ss_dssp             SSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred             cchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHH
Confidence             11    3378888888888   888999999988888753 225677888888888888764

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.87  E-value=2.2e-18  Score=157.46  Aligned_cols=322  Identities=10%  Similarity=0.013  Sum_probs=229.1

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChh
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIE  155 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~  155 (427)
                      ..+...+++..|+..|+.+...  .+.+..++..+...+...|++++|...+++ ....| +...+..+..++...|+++
T Consensus        11 ~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~   88 (359)
T 3ieg_A           11 KKLLAAGQLADALSQFHAAVDG--DPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLLLKQGKLD   88 (359)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHcCChH
Confidence            3444566777777777766543  233456666666667777777777777665 22233 4556666666777777777


Q ss_pred             HHHHHHHHHHhcCCC--cCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814          156 EAFCAFSKLKEMGVF--GSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE  233 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  233 (427)
                      +|...|+++.+....  .+...+..+.....       +       ...-.+...+...|++++|.+.++++...... +
T Consensus        89 ~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~-------~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~  153 (359)
T 3ieg_A           89 EAEDDFKKVLKSNPSEQEEKEAESQLVKADE-------M-------QRLRSQALDAFDGADYTAAITFLDKILEVCVW-D  153 (359)
T ss_dssp             HHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-------H-------HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-C
T ss_pred             HHHHHHHHHHhcCCcccChHHHHHHHHHHHH-------H-------HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-c
Confidence            777777766654320  02222322221111       0       00111356778899999999999998876543 7


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-----
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT-----  308 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-----  308 (427)
                      ...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+.... +...+.     
T Consensus       154 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~  231 (359)
T 3ieg_A          154 AELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQV  231 (359)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHH
Confidence            7889999999999999999999999998874 346788999999999999999999999999876433 333333     


Q ss_pred             -------HHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 045814          309 -------TVIHGLCKMGWLGDARKMWFEMIHKGLLPNE----YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTY  377 (427)
Q Consensus       309 -------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  377 (427)
                             .+...+.+.|++++|...++++.+.... +.    ..+..+..+|...|++++|...++...+.. +.+...|
T Consensus       232 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~  309 (359)
T 3ieg_A          232 KKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNAL  309 (359)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHH
Confidence                   2366688999999999999999886422 22    234557788999999999999999998863 3378899


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhc
Q 045814          378 NTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKE  422 (427)
Q Consensus       378 ~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~  422 (427)
                      ..+...|...|++++|.+.|++..+.  .|+ ...+..+..+....
T Consensus       310 ~~~~~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~  353 (359)
T 3ieg_A          310 KDRAEAYLIEEMYDEAIQDYEAAQEH--NENDQQIREGLEKAQRLL  353 (359)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHHHH
Confidence            99999999999999999999999985  444 55666666655443

>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}

Probab=99.86  E-value=2.9e-19  Score=171.80  Aligned_cols=315  Identities=10%  Similarity=-0.033  Sum_probs=263.2

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCI  184 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~  184 (427)
                      ...+......+.+.|++++|...|++ ....|+..+|..+..+|.+.|++++|...|+++.+.+.. +..+|..+..++.
T Consensus         6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~   84 (514)
T 2gw1_A            6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPD-YSKVLLRRASANE   84 (514)
T ss_dssp             HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChH-HHHHHHHHHHHHH
Confidence            34566778889999999999999997 344589999999999999999999999999999987644 6789999999999


Q ss_pred             HcCChhHHHHHHHHHHhcch------------------------------------------------------------
Q 045814          185 KIDRTDLVWKLYHDLIESGY------------------------------------------------------------  204 (427)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~~~------------------------------------------------------------  204 (427)
                      ..|++++|...|+.+...+.                                                            
T Consensus        85 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (514)
T 2gw1_A           85 GLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSM  164 (514)
T ss_dssp             HTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHH
T ss_pred             HHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHH
Confidence            99999999999998865431                                                            


Q ss_pred             ---------------------------hHHHHH---hcCChhHHHHHHHHHHH-----CCCC--------CCHHHHHHHH
Q 045814          205 ---------------------------LIQAFC---NDGKVSEGYELLRQVLE-----DGLV--------PENTAFNKLI  241 (427)
Q Consensus       205 ---------------------------l~~~~~---~~g~~~~a~~~~~~~~~-----~~~~--------~~~~~~~~li  241 (427)
                                                 ....+.   +.|++++|...++++..     ....        .+..++..+.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  244 (514)
T 2gw1_A          165 ASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTG  244 (514)
T ss_dssp             HHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHH
Confidence                                       011122   37999999999999988     3111        2356788889


Q ss_pred             HHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH
Q 045814          242 SRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG  321 (427)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  321 (427)
                      ..+...|++++|...++++.+....  ...+..+...|...|++++|...++++.+.... +...+..+...+...|+++
T Consensus       245 ~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~  321 (514)
T 2gw1_A          245 IFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYD  321 (514)
T ss_dssp             HHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTT
T ss_pred             HHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHH
Confidence            9999999999999999999987544  888999999999999999999999999887543 6778999999999999999


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +|...++++.+.... +..++..+...|...|++++|...++.+.+.. +.+...+..+...|...|++++|.+.++++.
T Consensus       322 ~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~  399 (514)
T 2gw1_A          322 QAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAI  399 (514)
T ss_dssp             HHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            999999999987533 56788899999999999999999999998763 3367889999999999999999999999987


Q ss_pred             HCCCC-CC----HhHHHHHHHHHHh---cCCCC
Q 045814          402 QKGIF-RD----VITYNTLIQGYCK---EGKIV  426 (427)
Q Consensus       402 ~~g~~-p~----~~~~~~li~~~~~---~g~~~  426 (427)
                      +.... ++    ...+..+...+.+   .|+++
T Consensus       400 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~  432 (514)
T 2gw1_A          400 ELENKLDGIYVGIAPLVGKATLLTRNPTVENFI  432 (514)
T ss_dssp             HHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHH
T ss_pred             HhhhccchHHHHHHHHHHHHHHHhhhhhcCCHH
Confidence            75221 11    3388888888888   77654

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.84  E-value=5.4e-18  Score=153.05  Aligned_cols=291  Identities=15%  Similarity=0.069  Sum_probs=203.1

Q ss_pred             CCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHH
Q 045814          102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSA  179 (427)
Q Consensus       102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~l  179 (427)
                      ...+...+..+...+...|++++|.+++++. .. +.+...+..++.++...|++++|...++++.+.... +...+..+
T Consensus        18 ~~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l   96 (330)
T 3hym_B           18 LQENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS-NPVSWFAV   96 (330)
T ss_dssp             --CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-STHHHHHH
T ss_pred             chhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHH
Confidence            4556667777777777778888888877762 22 234456666777777778888888888877765433 45566665


Q ss_pred             HHHHHHcC-ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          180 LLGCIKID-RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       180 l~~~~~~~-~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      ...+...| ++++|                          .+.+++....... +...|..+...+...|++++|...++
T Consensus        97 ~~~~~~~~~~~~~A--------------------------~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~  149 (330)
T 3hym_B           97 GCYYLMVGHKNEHA--------------------------RRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYF  149 (330)
T ss_dssp             HHHHHHSCSCHHHH--------------------------HHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHhhhhHHHH--------------------------HHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            55555555 45444                          4455554443322 45677788888888888888888888


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----
Q 045814          259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----  334 (427)
Q Consensus       259 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----  334 (427)
                      ++.+.... +...+..+...|...|++++|...++++.+.... +...+..+...+...|++++|...++++.+..    
T Consensus       150 ~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~  227 (330)
T 3hym_B          150 TAAQLMKG-CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPE-DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIG  227 (330)
T ss_dssp             HHHHHTTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHhccc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhcc
Confidence            88776432 3456666888888888888888888888776543 56778888888888888888888888877642    


Q ss_pred             ----CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-CH
Q 045814          335 ----LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR-DV  409 (427)
Q Consensus       335 ----~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~  409 (427)
                          ...+..++..+..+|...|++++|...+++..+.. +.+...|..+...|...|++++|.+.|++..+.  .| +.
T Consensus       228 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~  304 (330)
T 3hym_B          228 NEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGL--RRDDT  304 (330)
T ss_dssp             CSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT--CSCCH
T ss_pred             ccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc--CCCch
Confidence                12335677888888888888888888888887763 235677888888888888888888888887764  34 45


Q ss_pred             hHHHHHHHHH-HhcCCC
Q 045814          410 ITYNTLIQGY-CKEGKI  425 (427)
Q Consensus       410 ~~~~~li~~~-~~~g~~  425 (427)
                      ..+..+..++ ...|+.
T Consensus       305 ~~~~~l~~~~~~~~g~~  321 (330)
T 3hym_B          305 FSVTMLGHCIEMYIGDS  321 (330)
T ss_dssp             HHHHHHHHHHHTTTTC-
T ss_pred             HHHHHHHHHHHHHhCch
Confidence            6666666666 345543

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.84  E-value=6.2e-18  Score=163.49  Aligned_cols=224  Identities=13%  Similarity=0.032  Sum_probs=109.2

Q ss_pred             HHHHHHHHHHcCChhHHHHHHHHHHhcc-------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 045814          176 WNSALLGCIKIDRTDLVWKLYHDLIESG-------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKK  248 (427)
Q Consensus       176 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  248 (427)
                      +..+...+...|++++|...|+.+.+..       .+...+...|++++|.+.++++...... +..++..+...+...|
T Consensus       246 ~~~~g~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~  324 (537)
T 3fp2_A          246 LCYTGIFHFLKNNLLDAQVLLQESINLHPTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQ  324 (537)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHhcccHHHHHHHHHHHHhcCCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcC
Confidence            4444444555555555555555554432       1344444555555555555555543322 3445555555555555


Q ss_pred             ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      ++++|...+++..+.... +...+..+...|...|++++|...|+++.+.... +...+..+...+...|++++|...++
T Consensus       325 ~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~  402 (537)
T 3fp2_A          325 DYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKFPT-LPEVPTFFAEILTDRGDFDTAIKQYD  402 (537)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence            555555555555544321 2344555555555555555555555555444321 33455555555555555555555555


Q ss_pred             HHHHcCCC-----CCHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          329 EMIHKGLL-----PNEYTYNSMIHGYCRI----------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       329 ~m~~~~~~-----p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      ++.+....     .....+......+...          |++++|...++...+.. +.+...+..+...|...|++++|
T Consensus       403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A  481 (537)
T 3fp2_A          403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA  481 (537)
T ss_dssp             HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence            55433100     0011122223344444          55555555555555432 12344555555555555555555


Q ss_pred             HHHHHHHHHC
Q 045814          394 YHLFEEMAQK  403 (427)
Q Consensus       394 ~~~~~~m~~~  403 (427)
                      .+.|++..+.
T Consensus       482 ~~~~~~al~~  491 (537)
T 3fp2_A          482 IELFEDSAIL  491 (537)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHh
Confidence            5555555543

>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}

Probab=99.83  E-value=8.8e-17  Score=146.72  Aligned_cols=276  Identities=9%  Similarity=-0.011  Sum_probs=203.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC----CHHhHHHH------
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP----NPNSLELY------  144 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~----~~~~~~~l------  144 (427)
                      +..++...+++..|+..|+.+...  .+.+...+..+...+...|++++|...+++ ....|    +...+..+      
T Consensus        43 ~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~  120 (359)
T 3ieg_A           43 RATVFLAMGKSKAALPDLTKVIAL--KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEM  120 (359)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHccCHHHHHHHHHHHHHh--CCCcchHHHHHHHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHH
Confidence            345566789999999999998764  233678999999999999999999999998 45566    34455554      


Q ss_pred             ------HHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814          145 ------IQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG  218 (427)
Q Consensus       145 ------i~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a  218 (427)
                            ...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...                       
T Consensus       121 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~-----------------------  176 (359)
T 3ieg_A          121 QRLRSQALDAFDGADYTAAITFLDKILEVCVW-DAELRELRAECFIKEGEPRKAISD-----------------------  176 (359)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHCCCHHHHHHH-----------------------
Confidence                  47788889999999999888876443 566666666666555555555544                       


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHH------------HHHHHHHhcCChH
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYE------------EVINGLCKSRKRL  286 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~------------~ll~~~~~~~~~~  286 (427)
                         ++++..... .+..++..+...+...|++++|...+++..+.... +...+.            .+...+.+.|+++
T Consensus       177 ---~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  251 (359)
T 3ieg_A          177 ---LKAASKLKS-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HKRCFAHYKQVKKLNKLIESAEELIRDGRYT  251 (359)
T ss_dssp             ---HHHHHTTCS-CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             ---HHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHHHHHHHHHHHHHcCCHH
Confidence               444444432 26678888888888899999999999888876432 233332            2356688999999


Q ss_pred             HHHHHHHHHHhCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814          287 EAYRVFNDLKERGYVPDT----VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH  362 (427)
Q Consensus       287 ~a~~~~~~m~~~~~~p~~----~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  362 (427)
                      +|...++++.+.... +.    ..+..+...+...|++++|...+++..+.. +.+..++..+...|...|++++|...|
T Consensus       252 ~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~  329 (359)
T 3ieg_A          252 DATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDY  329 (359)
T ss_dssp             HHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            999999999876433 22    235557788999999999999999998863 336778899999999999999999999


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHH
Q 045814          363 KEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       363 ~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      ++..+... -+...+..+..+..
T Consensus       330 ~~a~~~~p-~~~~~~~~l~~~~~  351 (359)
T 3ieg_A          330 EAAQEHNE-NDQQIREGLEKAQR  351 (359)
T ss_dssp             HHHHTTCT-TCHHHHHHHHHHHH
T ss_pred             HHHHhcCC-CChHHHHHHHHHHH
Confidence            99988632 24555665555544

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=2.1e-20  Score=183.05  Aligned_cols=151  Identities=15%  Similarity=0.151  Sum_probs=122.6

Q ss_pred             CHhhHHHHHHHHHhcCChHHHHHHHHHHHh---CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 045814          268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKE---RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNS  344 (427)
Q Consensus       268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~---~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~  344 (427)
                      -..||+++|++||+.|++++|.++|.+|.+   .|+.||+.|||+||.+||+.|++++|.++|++|.+.|+.||..|||+
T Consensus       126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt  205 (1134)
T 3spa_A          126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA  205 (1134)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence            346899999999999999999999988764   58899999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------HhHHHHHHH
Q 045814          345 MIHGYCRIDN-LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD------VITYNTLIQ  417 (427)
Q Consensus       345 li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~------~~~~~~li~  417 (427)
                      +|.++|+.|+ .++|.++|++|.+.|+.||..+|+.++.++.+.+    +++..+++ ..++.|+      ..|...|.+
T Consensus       206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d  280 (1134)
T 3spa_A          206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD  280 (1134)
T ss_dssp             HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred             HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence            9999999997 4788999999999999999999999987665543    33334444 3355554      445555555


Q ss_pred             HHHhcC
Q 045814          418 GYCKEG  423 (427)
Q Consensus       418 ~~~~~g  423 (427)
                      .|.+.|
T Consensus       281 l~s~d~  286 (1134)
T 3spa_A          281 VYAKDG  286 (1134)
T ss_dssp             HHCCCS
T ss_pred             HHccCC
Confidence            555544

>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A

Probab=99.82  E-value=5e-17  Score=157.13  Aligned_cols=234  Identities=14%  Similarity=0.022  Sum_probs=194.3

Q ss_pred             CChhHHHHHHHHHHhcc---------------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh
Q 045814          187 DRTDLVWKLYHDLIESG---------------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG  251 (427)
Q Consensus       187 ~~~~~a~~~~~~~~~~~---------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  251 (427)
                      +++++|..+++.+.+..               .+...+...|++++|...+++.....  |+..++..+...+...|+++
T Consensus       216 ~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~  293 (537)
T 3fp2_A          216 DLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQ  293 (537)
T ss_dssp             HHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCH
T ss_pred             HHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHH
Confidence            57899999999988753               24567788999999999999999864  45788999999999999999


Q ss_pred             HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          252 RVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       252 ~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      +|.+.++++.+... .+..++..+...+...|++++|...|+++.+.... +...|..+...+...|++++|...++++.
T Consensus       294 ~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~  371 (537)
T 3fp2_A          294 EFFKFFQKAVDLNP-EYPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETK  371 (537)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            99999999988753 36778999999999999999999999999887543 56788999999999999999999999999


Q ss_pred             HcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhc----------CCHHHHHHH
Q 045814          332 HKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-----YGETTVTYNTLIAGLCLH----------GRTDEAYHL  396 (427)
Q Consensus       332 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~----------g~~~~A~~~  396 (427)
                      +.. +.+..++..+...|...|++++|...++++.+..     .......+..+...|...          |++++|...
T Consensus       372 ~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~  450 (537)
T 3fp2_A          372 LKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKL  450 (537)
T ss_dssp             HHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHH
T ss_pred             HhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHH
Confidence            874 3356788899999999999999999999987542     112233455666778888          999999999


Q ss_pred             HHHHHHCCCCCCHhHHHHHHHHHHhcCCCC
Q 045814          397 FEEMAQKGIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       397 ~~~m~~~g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      |++..+... .+...+..+...|.+.|+++
T Consensus       451 ~~~a~~~~p-~~~~~~~~l~~~~~~~g~~~  479 (537)
T 3fp2_A          451 LTKACELDP-RSEQAKIGLAQLKLQMEKID  479 (537)
T ss_dssp             HHHHHHHCT-TCHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHhCC-CCHHHHHHHHHHHHHhccHH
Confidence            999988632 35788999999999999865

>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}

Probab=99.82  E-value=2.5e-17  Score=148.68  Aligned_cols=283  Identities=13%  Similarity=-0.007  Sum_probs=214.3

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCC-CCHHhHHHHHHHHHhcC-
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFS-PNPNSLELYIQCLCESG-  152 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~-~~~~~~~~li~~~~~~~-  152 (427)
                      ....+...+++..|+++|+.+...  .+.+...+..++..+.+.|++++|...+++. ... .+...|..+...+...| 
T Consensus        28 ~a~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  105 (330)
T 3hym_B           28 LAERHYYNCDFKMCYKLTSVVMEK--DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCYYLMVGH  105 (330)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHHHHHSCS
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHc--CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhhh
Confidence            344566779999999999998765  2445667778888999999999999999873 223 35778999999999999 


Q ss_pred             ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045814          153 LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP  232 (427)
Q Consensus       153 ~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  232 (427)
                      ++++|.+.|++..+.... +...|..+...+...|++++|...++.+.+                          .... 
T Consensus       106 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--------------------------~~~~-  157 (330)
T 3hym_B          106 KNEHARRYLSKATTLEKT-YGPAWIAYGHSFAVESEHDQAMAAYFTAAQ--------------------------LMKG-  157 (330)
T ss_dssp             CHHHHHHHHHHHHTTCTT-CTHHHHHHHHHHHHHTCHHHHHHHHHHHHH--------------------------HTTT-
T ss_pred             hHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHH--------------------------hccc-
Confidence            999999999999886543 566777777777776666666666555443                          2222 


Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC--------CCCCh
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG--------YVPDT  304 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~--------~~p~~  304 (427)
                      +...+..+...+...|++++|.+.+++..+... .+..++..+...+...|++++|...++++.+..        ...+.
T Consensus       158 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~  236 (330)
T 3hym_B          158 CHLPMLYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWE  236 (330)
T ss_dssp             CSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCC
T ss_pred             cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHH
Confidence            345666688888888899999998888887643 356788888888889999999998888886531        12245


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL  384 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  384 (427)
                      .++..+...+...|++++|...++++.+... .+..++..+..+|...|++++|.+.+++..+.. +.+...+..+..++
T Consensus       237 ~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~  314 (330)
T 3hym_B          237 PLLNNLGHVCRKLKKYAEALDYHRQALVLIP-QNASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCI  314 (330)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhhCc-cchHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHH
Confidence            6888888889999999999999999887642 356778888888999999999999999887753 22567777777777


Q ss_pred             -HhcCCHH
Q 045814          385 -CLHGRTD  391 (427)
Q Consensus       385 -~~~g~~~  391 (427)
                       ...|+.+
T Consensus       315 ~~~~g~~~  322 (330)
T 3hym_B          315 EMYIGDSE  322 (330)
T ss_dssp             HTTTTC--
T ss_pred             HHHhCchh
Confidence             4555543

>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}

Probab=99.82  E-value=1.4e-20  Score=184.15  Aligned_cols=152  Identities=13%  Similarity=0.122  Sum_probs=126.7

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHhh---CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 045814          232 PENTAFNKLISRFCEKKNFGRVSELLHTMVA---RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT  308 (427)
Q Consensus       232 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  308 (427)
                      .-..||++||++||+.|++++|.++|.+|.+   .|+.||+.|||+||++||+.|++++|.++|++|.+.|+.||..|||
T Consensus       125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn  204 (1134)
T 3spa_A          125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA  204 (1134)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred             hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence            3457999999999999999999999988764   5789999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHccCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHH
Q 045814          309 TVIHGLCKMGWL-GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET------TVTYNTLI  381 (427)
Q Consensus       309 ~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li  381 (427)
                      ++|.++++.|+. ++|.++|++|.+.|+.||..+|++++.++.+.+    +.+..+++ ..++.|+      ..+...|.
T Consensus       205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~----vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~  279 (1134)
T 3spa_A          205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT----VLKAVHKV-KPTFSLPPQLPPPVNTSKLLR  279 (1134)
T ss_dssp             HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHH----HHHHHGGG-CCCCCCCCCCCCCCCCCTTTH
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHH----HHHHHHHh-CcccCCCCCCcccccchHHHH
Confidence            999999999984 789999999999999999999999987665543    33334444 3345554      44445555


Q ss_pred             HHHHhcC
Q 045814          382 AGLCLHG  388 (427)
Q Consensus       382 ~~~~~~g  388 (427)
                      +.|.+.+
T Consensus       280 dl~s~d~  286 (1134)
T 3spa_A          280 DVYAKDG  286 (1134)
T ss_dssp             HHHCCCS
T ss_pred             HHHccCC
Confidence            5555543

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.81  E-value=9.1e-18  Score=154.20  Aligned_cols=278  Identities=10%  Similarity=-0.030  Sum_probs=176.7

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      ...+..+...+.+.|++++|...+++. .. +.+..++..+..++...|++++|.+.|+++.+.... +..++..+...+
T Consensus        64 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~  142 (368)
T 1fch_A           64 HPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSF  142 (368)
T ss_dssp             CSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            344555556666666666666666552 22 223455566666666666666666666666554322 455555555555


Q ss_pred             HHcCChhHHHHHHHHHHhcchh-HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814          184 IKIDRTDLVWKLYHDLIESGYL-IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA  262 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~l-~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  262 (427)
                      ...|++++|...++.+...+.- ...+...+....           ...+ ...+. .+..+...|++++|...++++.+
T Consensus       143 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~-~~~~~-~~~~~~~~~~~~~A~~~~~~a~~  209 (368)
T 1fch_A          143 TNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAG-----------GAGL-GPSKR-ILGSLLSDSLFLEVKELFLAAVR  209 (368)
T ss_dssp             HHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------------------C-TTHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhh-----------hhcc-cHHHH-HHHHHhhcccHHHHHHHHHHHHH
Confidence            5555555555555554432110 000000000000           0000 00111 23333478888999999988887


Q ss_pred             CCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHH
Q 045814          263 RNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYT  341 (427)
Q Consensus       263 ~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~  341 (427)
                      ..... +..++..+...|.+.|++++|...|+++.+.... +..+|..+...+...|++++|...++++.+.. +.+..+
T Consensus       210 ~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~  287 (368)
T 1fch_A          210 LDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRS  287 (368)
T ss_dssp             HSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred             hCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHH
Confidence            64322 4678888888899999999999999988776432 56788888889999999999999999988764 235678


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE----------TTVTYNTLIAGLCLHGRTDEAYHLFEE  399 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~A~~~~~~  399 (427)
                      +..+..+|.+.|++++|...|+++.+.....          ...+|..+..+|...|++++|..++++
T Consensus       288 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~  355 (368)
T 1fch_A          288 RYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADAR  355 (368)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence            8888889999999999999998887642111          157888999999999999998888764

>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A

Probab=99.80  E-value=3.4e-17  Score=150.37  Aligned_cols=276  Identities=10%  Similarity=0.008  Sum_probs=212.5

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhc
Q 045814           74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCES  151 (427)
Q Consensus        74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~  151 (427)
                      ......+...+++..|+..|+.+...  .+.+..++..+...+.+.|++++|.+.+++. .. +.+..++..+..+|...
T Consensus        68 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~  145 (368)
T 1fch_A           68 FEEGLRRLQEGDLPNAVLLFEAAVQQ--DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPDNQTALMALAVSFTNE  145 (368)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHS--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHc
Confidence            34556677889999999999999764  3456889999999999999999999999872 22 34678999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045814          152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV  231 (427)
Q Consensus       152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  231 (427)
                      |++++|.+.|+++.+.... +...+..+....   +    ...   .-.... .+..+...|++++|...++++......
T Consensus       146 g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~---~----~~~---~~~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~p~  213 (368)
T 1fch_A          146 SLQRQACEILRDWLRYTPA-YAHLVTPAEEGA---G----GAG---LGPSKR-ILGSLLSDSLFLEVKELFLAAVRLDPT  213 (368)
T ss_dssp             TCHHHHHHHHHHHHHTSTT-TGGGCC-------------------------C-TTHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHh---h----hhc---ccHHHH-HHHHHhhcccHHHHHHHHHHHHHhCcC
Confidence            9999999999999986533 222222111000   0    000   000001 222333778888888888888875433


Q ss_pred             C-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814          232 P-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV  310 (427)
Q Consensus       232 ~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  310 (427)
                      . +..++..+...+...|++++|...++++.+.. +.+..++..+...+.+.|++++|...|+++.+... .+..++..+
T Consensus       214 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l  291 (368)
T 1fch_A          214 SIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNL  291 (368)
T ss_dssp             SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHH
T ss_pred             cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHH
Confidence            2 57889999999999999999999999998874 33578899999999999999999999999987643 267789999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGLLP----------NEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ...|.+.|++++|...++++.+.....          ...+|..+..+|...|+.++|..++++.
T Consensus       292 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~  356 (368)
T 1fch_A          292 GISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD  356 (368)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence            999999999999999999988753221          1578999999999999999999887743

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.79  E-value=9.5e-18  Score=154.08  Aligned_cols=274  Identities=9%  Similarity=-0.039  Sum_probs=183.9

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      ...+..+...+.+.|++++|...|++. .. +.+..+|..+..+|...|++++|.+.|+++.+.... +..++..+..+|
T Consensus        65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~  143 (365)
T 4eqf_A           65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPN-NLKALMALAVSY  143 (365)
T ss_dssp             CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHH
Confidence            344666667777777777777777652 22 234566777777777777777777777777665332 466666666666


Q ss_pred             HHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814          184 IKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR  263 (427)
Q Consensus       184 ~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  263 (427)
                      ...|++++|...|+++.+.+.-..         .+   +     .........+..+...+...|++++|...++++.+.
T Consensus       144 ~~~g~~~~A~~~~~~al~~~p~~~---------~~---~-----~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  206 (365)
T 4eqf_A          144 TNTSHQQDACEALKNWIKQNPKYK---------YL---V-----KNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQ  206 (365)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCHHHH---------CC---------------------------CCHHHHHHHHHHHHHHHH
T ss_pred             HccccHHHHHHHHHHHHHhCccch---------HH---H-----hhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHh
Confidence            666666666666665554211000         00   0     000011234455677888889999999999988877


Q ss_pred             CCC-CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHH
Q 045814          264 NRA-PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTY  342 (427)
Q Consensus       264 ~~~-~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~  342 (427)
                      ... ++..++..+...|.+.|++++|...|+++.+.... +..+|..+..+|...|++++|...++++.+.. +.+..++
T Consensus       207 ~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~  284 (365)
T 4eqf_A          207 NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPE-DYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSR  284 (365)
T ss_dssp             SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred             CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHH
Confidence            532 25778888889999999999999999998876433 67788889999999999999999999988863 2247788


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHCCCC-----------CChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 045814          343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYG-----------ETTVTYNTLIAGLCLHGRTDEAYHLFEE  399 (427)
Q Consensus       343 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~A~~~~~~  399 (427)
                      ..+..+|...|++++|...|+++.+....           .+...|..+..++...|+.+.+.++.++
T Consensus       285 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          285 YNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            88889999999999999999988764211           1367888999999999999888877654

>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}

Probab=99.78  E-value=8.7e-17  Score=147.64  Aligned_cols=270  Identities=10%  Similarity=-0.023  Sum_probs=207.0

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhc
Q 045814           74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCES  151 (427)
Q Consensus        74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~  151 (427)
                      ......+...+++..|+..|+.+...  .+.+..++..+...+.+.|++++|...|++. ...| +..+|..+..+|...
T Consensus        69 ~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~  146 (365)
T 4eqf_A           69 FEEGLKRLKEGDLPVTILFMEAAILQ--DPGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNT  146 (365)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHcc
Confidence            34455677889999999999999764  2457889999999999999999999999973 3334 578999999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC
Q 045814          152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV  231 (427)
Q Consensus       152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~  231 (427)
                      |++++|.+.|+++.+.... +...+..+.                ....-...+...+...|++++|.+.++++......
T Consensus       147 g~~~~A~~~~~~al~~~p~-~~~~~~~~~----------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~  209 (365)
T 4eqf_A          147 SHQQDACEALKNWIKQNPK-YKYLVKNKK----------------GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGD  209 (365)
T ss_dssp             TCHHHHHHHHHHHHHHCHH-HHCC-----------------------------------CCHHHHHHHHHHHHHHHHSCS
T ss_pred             ccHHHHHHHHHHHHHhCcc-chHHHhhhc----------------cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcC
Confidence            9999999999999885322 222222210                00000112345566777777888888877765432


Q ss_pred             -CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHH
Q 045814          232 -PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTV  310 (427)
Q Consensus       232 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l  310 (427)
                       .+..++..+...+...|++++|.+.+++..+... .+..+|..+...|.+.|++++|...|+++.+.... +..+|..+
T Consensus       210 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l  287 (365)
T 4eqf_A          210 MIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRP-EDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNL  287 (365)
T ss_dssp             SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHH
T ss_pred             ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHH
Confidence             2678999999999999999999999999988743 36789999999999999999999999999887433 57889999


Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcCCC-----------CCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKGLL-----------PNEYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~~~-----------p~~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      ..+|.+.|++++|...++++.+....           .+..+|..+..++...|+.+.+..+.+.
T Consensus       288 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~  352 (365)
T 4eqf_A          288 GISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG  352 (365)
T ss_dssp             HHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence            99999999999999999998875211           1356889999999999999988887765

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.77  E-value=1.4e-16  Score=143.49  Aligned_cols=279  Identities=10%  Similarity=-0.034  Sum_probs=203.4

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG  182 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  182 (427)
                      +...+..+...+...|++++|..++++. .. +.+..++..+..++...|++++|.+.|+++.+.... +..++..+...
T Consensus        20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~la~~   98 (327)
T 3cv0_A           20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVS   98 (327)
T ss_dssp             GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcC-CHHHHHHHHHH
Confidence            4456677788888899999999988873 22 335678888888899999999999999988876433 66777777777


Q ss_pred             HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH-HH-HHHccCChhHHHHHHHHH
Q 045814          183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKL-IS-RFCEKKNFGRVSELLHTM  260 (427)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-i~-~~~~~~~~~~a~~~~~~m  260 (427)
                      +...|++++|...++.+.+...-         ...+...+.     ...|+......+ .. .+...|++++|.+.++++
T Consensus        99 ~~~~~~~~~A~~~~~~~~~~~~~---------~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~  164 (327)
T 3cv0_A           99 HTNEHNANAALASLRAWLLSQPQ---------YEQLGSVNL-----QADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAA  164 (327)
T ss_dssp             HHHTTCHHHHHHHHHHHHHTSTT---------TTTC-------------------------CCTTSHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHhCCc---------cHHHHHHHh-----HHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHH
Confidence            77777777777777766543110         000000000     000111111112 22 367788899999999988


Q ss_pred             hhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH
Q 045814          261 VARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY  340 (427)
Q Consensus       261 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~  340 (427)
                      .+... .+..++..+...|.+.|++++|...++++.+.... +..++..+...+...|++++|...++++.+.. +.+..
T Consensus       165 ~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~  241 (327)
T 3cv0_A          165 LEMNP-NDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPD-DAQLWNKLGATLANGNRPQEALDAYNRALDIN-PGYVR  241 (327)
T ss_dssp             HHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHH
T ss_pred             HhhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHH
Confidence            87753 36778888999999999999999999998876433 57788889999999999999999999988864 23577


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-----------TTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      ++..+...|...|++++|.+.++++.+.....           +...|..+..+|...|++++|..++++..
T Consensus       242 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          242 VMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            88889999999999999999999988653221           46788999999999999999999887543

>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A

Probab=99.76  E-value=4.5e-16  Score=140.20  Aligned_cols=274  Identities=11%  Similarity=-0.019  Sum_probs=212.6

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CC-CCCHHhHHHHHHHHHhc
Q 045814           74 LFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST-GF-SPNPNSLELYIQCLCES  151 (427)
Q Consensus        74 ~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~-~~~~~~~~~li~~~~~~  151 (427)
                      ......+...++++.|+.+|+.+...  .+.+...+..+...+.+.|++++|...+++. .. +.+..++..+...+...
T Consensus        25 ~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~  102 (327)
T 3cv0_A           25 MEEGLSMLKLANLAEAALAFEAVCQA--APEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE  102 (327)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcCCHHHHHHHHHHHHHc
Confidence            34455677889999999999998764  2447888999999999999999999999873 22 34678899999999999


Q ss_pred             CChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchh-HH-HHHhcCChhHHHHHHHHHHHCC
Q 045814          152 GLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYL-IQ-AFCNDGKVSEGYELLRQVLEDG  229 (427)
Q Consensus       152 ~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l-~~-~~~~~g~~~~a~~~~~~~~~~~  229 (427)
                      |++++|.+.|+++.+.... +...+..+...+....             ....+ .. .+...|++++|.+.++++....
T Consensus       103 ~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~  168 (327)
T 3cv0_A          103 HNANAALASLRAWLLSQPQ-YEQLGSVNLQADVDID-------------DLNVQSEDFFFAAPNEYRECRTLLHAALEMN  168 (327)
T ss_dssp             TCHHHHHHHHHHHHHTSTT-TTTC---------------------------------CCTTSHHHHHHHHHHHHHHHHHS
T ss_pred             CCHHHHHHHHHHHHHhCCc-cHHHHHHHhHHHHHHH-------------HHHHHHHhHHHHHcccHHHHHHHHHHHHhhC
Confidence            9999999999999986433 3333333321110000             00011 11 2667788889999998888765


Q ss_pred             CCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHH
Q 045814          230 LVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTT  309 (427)
Q Consensus       230 ~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~  309 (427)
                      .. +..++..+...+...|++++|.+.++++.+... .+..++..+...+...|++++|...|+++.+.... +..++..
T Consensus       169 ~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~  245 (327)
T 3cv0_A          169 PN-DAQLHASLGVLYNLSNNYDSAAANLRRAVELRP-DDAQLWNKLGATLANGNRPQEALDAYNRALDINPG-YVRVMYN  245 (327)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHH
T ss_pred             CC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence            43 778899999999999999999999999988743 35778999999999999999999999999876533 6778999


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCC-----------CHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLP-----------NEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      +...+...|++++|...++++.+.....           +..++..+..++...|++++|..+++...
T Consensus       246 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l  313 (327)
T 3cv0_A          246 MAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQNV  313 (327)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCCS
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Confidence            9999999999999999999998764321           46788899999999999999999987543

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.76  E-value=7.4e-14  Score=133.43  Aligned_cols=314  Identities=13%  Similarity=0.080  Sum_probs=159.6

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH----cCChHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCCh
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE----SGLI  154 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~  154 (427)
                      .++...|+..|+.+...    -+...+..|...|..    .+++++|.++|++.-..-++..+..|...|..    .+++
T Consensus        56 ~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~  131 (490)
T 2xm6_A           56 TKDLTQAMDWFRRAAEQ----GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQAQQNLGVMYHEGNGVKVDK  131 (490)
T ss_dssp             CCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred             CcCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence            45555666665555432    234455555555555    55666666666553222344555555555555    5556


Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcch------hHHHHHh----cCChhHHHH
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIESGY------LIQAFCN----DGKVSEGYE  220 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~------l~~~~~~----~g~~~~a~~  220 (427)
                      ++|.+.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.+.      +...|..    .++.++|.+
T Consensus       132 ~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~  208 (490)
T 2xm6_A          132 AESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVWSCNQLGYMYSRGLGVERNDAISAQ  208 (490)
T ss_dssp             HHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred             HHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence            66666666555543   34445555555554    5556666666655554431      3333333    455566666


Q ss_pred             HHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHH
Q 045814          221 LLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAYRVF  292 (427)
Q Consensus       221 ~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~  292 (427)
                      +|++..+.|   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|...|
T Consensus       209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~  282 (490)
T 2xm6_A          209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWY  282 (490)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHH
T ss_pred             HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHH
Confidence            666555543   33444445555543    455556666655555443   23344444444444    55555555555


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHH
Q 045814          293 NDLKERGYVPDTVMYTTVIHGLCKM-----GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID---NLEEAKRLHKE  364 (427)
Q Consensus       293 ~~m~~~~~~p~~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~  364 (427)
                      ++..+.|   +...+..+...|...     ++.++|...+++..+.|   +...+..+...|...|   +.++|.+.|++
T Consensus       283 ~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~  356 (490)
T 2xm6_A          283 RKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRK  356 (490)
T ss_dssp             HHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHH
T ss_pred             HHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHH
Confidence            5555442   333444444444444     55555555555555543   2334444444444433   45555555555


Q ss_pred             HHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          365 MLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       365 m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                      ..+.|   +...+..|...|..    .+++++|.+.|++..+.|   +...+..|-..|.+
T Consensus       357 a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~  411 (490)
T 2xm6_A          357 AAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYY  411 (490)
T ss_dssp             HHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHH
T ss_pred             HHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHc
Confidence            55542   44455555555555    455555555555555543   23344444444433

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.73  E-value=8.9e-17  Score=146.22  Aligned_cols=287  Identities=11%  Similarity=0.049  Sum_probs=134.7

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChh
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE  155 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  155 (427)
                      +..++...++.+.|.++++..       +++.+|..+..++.+.|++++|.+.|.+.   +|..+|..++.++...|+++
T Consensus         9 ~~~ll~~~~~ld~A~~fae~~-------~~~~vWs~La~A~l~~g~~~eAIdsfika---~D~~~y~~V~~~ae~~g~~E   78 (449)
T 1b89_A            9 VQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA---DDPSSYMEVVQAANTSGNWE   78 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHHccCHHHHHHHHHhC-------CChHHHHHHHHHHHHcCCHHHHHHHHHcC---CCHHHHHHHHHHHHhCCCHH
Confidence            455667788899999999887       23459999999999999999999999764   57789999999999999999


Q ss_pred             HHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHH--HhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 045814          156 EAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDL--IESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPE  233 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~  233 (427)
                      +|...++..++.  .+++.+.+.++.+|.+.|+++++.++++.-  .....+...|...|.+++|...|..+        
T Consensus        79 eAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------  148 (449)
T 1b89_A           79 ELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFINGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------  148 (449)
T ss_dssp             --------------------------------CHHHHTTTTTCC----------------CTTTHHHHHHHT--------
T ss_pred             HHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcCCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------
Confidence            999988777663  456788999999999999999999888642  12245888999999999999999976        


Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG  313 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  313 (427)
                       ..|..++.++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.     ..+.....++..
T Consensus       149 -~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-----~~ad~l~~lv~~  216 (449)
T 1b89_A          149 -SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-----VHADELEELINY  216 (449)
T ss_dssp             -TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-----TCHHHHHHHHHH
T ss_pred             -hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-----hCHhhHHHHHHH
Confidence             37999999999999999999999988      268899999999999999999966555422     234445578899


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-CCCC------ChhhHHHHHHHHHh
Q 045814          314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-GYGE------TTVTYNTLIAGLCL  386 (427)
Q Consensus       314 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p------~~~~~~~li~~~~~  386 (427)
                      |.+.|++++|..+++...... .-....|+-+.-+|++- ++++..+-++..... +++|      +...|..+.-.|..
T Consensus       217 Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~  294 (449)
T 1b89_A          217 YQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDK  294 (449)
T ss_dssp             HHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999998765 44567788887777766 344444444333222 2333      46789999999999


Q ss_pred             cCCHHHHHHH
Q 045814          387 HGRTDEAYHL  396 (427)
Q Consensus       387 ~g~~~~A~~~  396 (427)
                      .++++.|...
T Consensus       295 ~~e~d~A~~t  304 (449)
T 1b89_A          295 YEEYDNAIIT  304 (449)
T ss_dssp             TTCHHHHHHH
T ss_pred             hchHHHHHHH
Confidence            9999988874

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.72  E-value=9.2e-15  Score=129.47  Aligned_cols=251  Identities=12%  Similarity=0.040  Sum_probs=171.1

Q ss_pred             HHHHHHcCChHHHHHHHHhc-CCCCCH--HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCCh
Q 045814          113 FDSLVEARAFKVAMDFLDST-GFSPNP--NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRT  189 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~~-~~~~~~--~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~  189 (427)
                      ++.....|++..|+..+++. ...|+.  .....+.++|...|+++.|+..++..    -.|+..++..+...+.     
T Consensus         6 ~~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~-----   76 (291)
T 3mkr_A            6 VKNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLA-----   76 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHH-----
T ss_pred             HHHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHc-----
Confidence            45566789999999988873 444543  35567788999999999998766441    2345555555554444     


Q ss_pred             hHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC
Q 045814          190 DLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD  268 (427)
Q Consensus       190 ~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  268 (427)
                                           ..|+.++|++.++++...+..| +...+..+...+...|++++|.+.+++      ..+
T Consensus        77 ---------------------~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~  129 (291)
T 3mkr_A           77 ---------------------SHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDS  129 (291)
T ss_dssp             ---------------------CSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCS
T ss_pred             ---------------------CCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCC
Confidence                                 4455556666666666655444 445556666777888888888888776      345


Q ss_pred             HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH---HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814          269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY---TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM  345 (427)
Q Consensus       269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~---~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  345 (427)
                      ...+..+...|.+.|++++|.+.|+++.+..  |+....   ...+..+...|++++|..+|+++.+. .+.+...++.+
T Consensus       130 ~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~l  206 (291)
T 3mkr_A          130 LECMAMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQ  206 (291)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHH
Confidence            6677777788888888888888888887663  443211   12223344557788888888888776 34467777788


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHHC
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE-AYHLFEEMAQK  403 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-A~~~~~~m~~~  403 (427)
                      ..++.+.|++++|...+++..+.. +-+..++..++..+...|+.++ +.++++++.+.
T Consensus       207 a~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~  264 (291)
T 3mkr_A          207 AACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA  264 (291)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence            888888888888888888877653 2266777778888888888765 56777777764

>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}

Probab=99.72  E-value=3.1e-13  Score=129.16  Aligned_cols=309  Identities=12%  Similarity=0.034  Sum_probs=258.2

Q ss_pred             HHHHHHh----cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHH----cCChHHHHHHHHhcCCCCCHHhHHHHHHH
Q 045814           76 FREFLKQ----QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVE----ARAFKVAMDFLDSTGFSPNPNSLELYIQC  147 (427)
Q Consensus        76 ~~~~l~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~li~~  147 (427)
                      +..++..    .++...|++.|+.+...    -+...+..|...|..    .+++++|..+|++.-..-++..+..|...
T Consensus        81 Lg~~y~~g~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~  156 (490)
T 2xm6_A           81 LGLRYMNGEGVPQDYAQAVIWYKKAALK----GLPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDA  156 (490)
T ss_dssp             HHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHcCCCCCCCHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            4445555    78999999999998653    367788888888888    78999999999984333467888889998


Q ss_pred             HHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcch------hHHHHHh--
Q 045814          148 LCE----SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIESGY------LIQAFCN--  211 (427)
Q Consensus       148 ~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~------l~~~~~~--  211 (427)
                      |..    .+++++|.+.|++..+.|   +...+..+...|..    .++.++|.++|+...+.+.      +...|..  
T Consensus       157 y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~  233 (490)
T 2xm6_A          157 YFEGDGVTRDYVMAREWYSKAAEQG---NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSGDELGQLHLADMYYFGI  233 (490)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred             HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC
Confidence            987    889999999999998864   67888889999988    8999999999999887753      4555554  


Q ss_pred             --cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc---
Q 045814          212 --DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS---  282 (427)
Q Consensus       212 --~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~---  282 (427)
                        .+++++|..+|++..+.|   +...+..+...|..    .++.++|...|++..+.|   +...+..+...|...   
T Consensus       234 g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g  307 (490)
T 2xm6_A          234 GVTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEG  307 (490)
T ss_dssp             SSCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTT
T ss_pred             CCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCC
Confidence              789999999999998865   45677777777877    899999999999998775   455777788888877   


Q ss_pred             --CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cC
Q 045814          283 --RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG---WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----ID  353 (427)
Q Consensus       283 --~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g  353 (427)
                        +++++|...|++..+.|   +...+..+...|...|   +.++|...|++..+.|   +...+..+...|..    .+
T Consensus       308 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~  381 (490)
T 2xm6_A          308 VAKNREQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKK  381 (490)
T ss_dssp             BCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCC
T ss_pred             CcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCC
Confidence              89999999999998875   5567777888887766   7899999999999875   66788888888888    89


Q ss_pred             CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045814          354 NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  406 (427)
                      ++++|...|++..+.|   +...+..|...|..    .++.++|.+.|++..+.|..
T Consensus       382 ~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~  435 (490)
T 2xm6_A          382 DEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMN  435 (490)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCC
T ss_pred             CHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCC
Confidence            9999999999999875   67888899999988    89999999999999987643

>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3

Probab=99.71  E-value=8.9e-17  Score=146.23  Aligned_cols=271  Identities=13%  Similarity=0.131  Sum_probs=127.4

Q ss_pred             HHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHH
Q 045814          117 VEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY  196 (427)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  196 (427)
                      -+.|++++|.+.+++.+   ++.+|..|+.++.+.|++++|++.|.+.      +|..+|..++..+...|++++|...+
T Consensus        14 ~~~~~ld~A~~fae~~~---~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl   84 (449)
T 1b89_A           14 EHIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYL   84 (449)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHccCHHHHHHHHHhCC---ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHH
Confidence            36788999999999883   4469999999999999999999999653      57889999999999999999999988


Q ss_pred             HHHHhc-------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH
Q 045814          197 HDLIES-------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN  269 (427)
Q Consensus       197 ~~~~~~-------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~  269 (427)
                      +...+.       ..++.+|.+.|+++++.++++       .|+..+|..+...|...|.+++|...|..+         
T Consensus        85 ~~ark~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------  148 (449)
T 1b89_A           85 QMARKKARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------  148 (449)
T ss_dssp             ------------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT---------
T ss_pred             HHHHHhCccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------
Confidence            777654       237779999999999988885       367779999999999999999999999976         


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..|..+..++.+.|++++|.+.+.++      .++.+|..++.+|...|+++.|......+.   +.|+  -...++..|
T Consensus       149 ~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~---~~ad--~l~~lv~~Y  217 (449)
T 1b89_A          149 SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYY  217 (449)
T ss_dssp             TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT---TCHH--HHHHHHHHH
T ss_pred             hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH---hCHh--hHHHHHHHH
Confidence            48999999999999999999999998      278899999999999999999965544322   3343  355788999


Q ss_pred             hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------CHhHHHHHHHHHHh
Q 045814          350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH--GRTDEAYHLFEEMAQKGIFR------DVITYNTLIQGYCK  421 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~  421 (427)
                      .+.|.+++|..+++...... +-....|+-|..+|++-  ++..+.++.|..  ..+++|      +...|.-++-.|.+
T Consensus       218 ek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~  294 (449)
T 1b89_A          218 QDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDK  294 (449)
T ss_dssp             HHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHh
Confidence            99999999999999998664 44577888887777765  334444444431  113333      35567777777777


Q ss_pred             cCCCC
Q 045814          422 EGKIV  426 (427)
Q Consensus       422 ~g~~~  426 (427)
                      .|++|
T Consensus       295 ~~e~d  299 (449)
T 1b89_A          295 YEEYD  299 (449)
T ss_dssp             TTCHH
T ss_pred             hchHH
Confidence            77654

>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}

Probab=99.71  E-value=8.1e-15  Score=129.84  Aligned_cols=270  Identities=12%  Similarity=0.087  Sum_probs=197.6

Q ss_pred             HhcCChHHHHHHHHHHhhcCCCCCCH--hhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHH
Q 045814           81 KQQNNVLLSIRFFQWLHSHYGFSPDL--VSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~  158 (427)
                      -..+++..|+..++.+..   ..|+.  .....+.++|...|+++.|...++.. ..|+..++..+...+...++.++|+
T Consensus        10 ~~~g~y~~ai~~~~~~~~---~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-~~~~~~a~~~la~~~~~~~~~~~A~   85 (291)
T 3mkr_A           10 FYIGSYQQCINEAQRVKP---SSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-SAPELQAVRMFAEYLASHSRRDAIV   85 (291)
T ss_dssp             HHTTCHHHHHHHHHHSCC---CSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT-SCHHHHHHHHHHHHHHCSTTHHHHH
T ss_pred             HHHHHHHHHHHHHHhccc---CCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc-CChhHHHHHHHHHHHcCCCcHHHHH
Confidence            357899999988876532   34543  35566789999999999999988764 3567778999999999999999999


Q ss_pred             HHHHHHHhcCCCcC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 045814          159 CAFSKLKEMGVFGS-IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAF  237 (427)
Q Consensus       159 ~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~  237 (427)
                      +.++++...+..|+ ...+..+...+...|++++|.+.                          +++      ..+...+
T Consensus        86 ~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~--------------------------l~~------~~~~~~~  133 (291)
T 3mkr_A           86 AELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRT--------------------------LHQ------GDSLECM  133 (291)
T ss_dssp             HHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHH--------------------------HTT------CCSHHHH
T ss_pred             HHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHH--------------------------HhC------CCCHHHH
Confidence            99999998775554 44555555566555555555544                          443      2467788


Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH---HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY---EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL  314 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~---~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  314 (427)
                      ..+...+.+.|++++|.+.++++.+..  |+....   ...+..+...|++++|..+|+++.+... .+...|+.+..++
T Consensus       134 ~~l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p-~~~~~~~~la~~~  210 (291)
T 3mkr_A          134 AMTVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCS-PTLLLLNGQAACH  210 (291)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCC-CcHHHHHHHHHHH
Confidence            888899999999999999999988874  443211   2233444556899999999999987743 4778888899999


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHH-HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEE-AKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~-a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      .+.|++++|...++++.+... -+..++..++..+...|+.++ +.++++++.+..  |+...   +.+...+.+.++++
T Consensus       211 ~~~g~~~eA~~~l~~al~~~p-~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~--P~~~~---~~d~~~~~~~fd~~  284 (291)
T 3mkr_A          211 MAQGRWEAAEGVLQEALDKDS-GHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH--RSHPF---IKEYRAKENDFDRL  284 (291)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHH---HHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC--CCChH---HHHHHHHHHHHHHH
Confidence            999999999999999888742 367788888888888998865 578888888753  44322   22334455555555


Q ss_pred             HH
Q 045814          394 YH  395 (427)
Q Consensus       394 ~~  395 (427)
                      ..
T Consensus       285 ~~  286 (291)
T 3mkr_A          285 VL  286 (291)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.69  E-value=4.3e-13  Score=129.44  Aligned_cols=204  Identities=11%  Similarity=0.045  Sum_probs=148.7

Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-------cCChh-------HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLISRFCE-------KKNFG-------RVSELLHTMVARNRAPDNFTYEEVINGLCKS  282 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~-------~~~~~-------~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~  282 (427)
                      .+..+|++.....+ -+...|..+...+.+       .|+++       +|..++++..+.-.+-+...|..++..+.+.
T Consensus       256 ~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~  334 (530)
T 2ooe_A          256 RVMFAYEQCLLVLG-HHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR  334 (530)
T ss_dssp             HHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence            44556666555422 256677777777665       68876       8899999888632233577888889999999


Q ss_pred             CChHHHHHHHHHHHhCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHhhcCCHHHHH
Q 045814          283 RKRLEAYRVFNDLKERGYVPD--TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH-GYCRIDNLEEAK  359 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~  359 (427)
                      |++++|..+|+++.+.  .|+  ...|...+..+.+.|++++|..+|++..+... .+...|..... .+...|+.++|.
T Consensus       335 g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~~~~~~~~A~  411 (530)
T 2ooe_A          335 MKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAF  411 (530)
T ss_dssp             TCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHHHTCCHHHHH
T ss_pred             CCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHHHcCChhHHH
Confidence            9999999999999886  343  24788888888889999999999999987632 12223322222 234689999999


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC-CCC--HhHHHHHHHHHHhcCCC
Q 045814          360 RLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI-FRD--VITYNTLIQGYCKEGKI  425 (427)
Q Consensus       360 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~--~~~~~~li~~~~~~g~~  425 (427)
                      .+|+...+.. +-+...|..++..+.+.|+.++|..+|++....+. .|+  ...|...+....+.|+.
T Consensus       412 ~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~  479 (530)
T 2ooe_A          412 KIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDL  479 (530)
T ss_dssp             HHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCH
T ss_pred             HHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCH
Confidence            9999888753 33678899999999999999999999999988642 332  44777778777777764

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.68  E-value=5.7e-14  Score=133.43  Aligned_cols=334  Identities=10%  Similarity=-0.021  Sum_probs=222.6

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhc----CC---CCCCHhhHHHHHHHHHHcCChHHHHHHHHhc-------C--CC-CC
Q 045814           75 FFREFLKQQNNVLLSIRFFQWLHSH----YG---FSPDLVSCNVLFDSLVEARAFKVAMDFLDST-------G--FS-PN  137 (427)
Q Consensus        75 ~~~~~l~~~~~~~~a~~~~~~~~~~----~~---~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~--~~-~~  137 (427)
                      .+..+....++.+.|++.|+.+..-    .+   ......+|+.+..+|...|++++|...+++.       .  .. ..
T Consensus        56 ~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~  135 (472)
T 4g1t_A           56 LLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIES  135 (472)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCC
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhh
Confidence            4566777889999999999876431    11   2234678999999999999999999988752       1  11 23


Q ss_pred             HHhHHHHHHHHHhc--CChhHHHHHHHHHHhcCCCcCHhhHHHHHHH---HHHcCChhHHHHHHHHHHhcch--------
Q 045814          138 PNSLELYIQCLCES--GLIEEAFCAFSKLKEMGVFGSIKTWNSALLG---CIKIDRTDLVWKLYHDLIESGY--------  204 (427)
Q Consensus       138 ~~~~~~li~~~~~~--~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~~--------  204 (427)
                      ..+++.+..++...  +++++|.+.|++..+..+. +...+..+..+   +...++.++|++.+++.++.+.        
T Consensus       136 ~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~-~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~  214 (472)
T 4g1t_A          136 PELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPK-NPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVL  214 (472)
T ss_dssp             HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHH
T ss_pred             HHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHH
Confidence            56677666666554  5699999999999886543 45555555544   4456788889999988876532        


Q ss_pred             hHH----HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHH
Q 045814          205 LIQ----AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLC  280 (427)
Q Consensus       205 l~~----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~  280 (427)
                      +..    .+...|+.++|.+.+++....... +..++..+...|...|++++|...+++..+..+. +..++..+...|.
T Consensus       215 l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~  292 (472)
T 4g1t_A          215 LALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYR  292 (472)
T ss_dssp             HHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHH
Confidence            222    233457789999999998876544 6778899999999999999999999999887432 4556666665554


Q ss_pred             hc-------------------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-
Q 045814          281 KS-------------------RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-  340 (427)
Q Consensus       281 ~~-------------------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-  340 (427)
                      ..                   +..++|...|++..+.... +..++..+...|...|++++|...|++..+....+... 
T Consensus       293 ~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~  371 (472)
T 4g1t_A          293 AKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEANDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQ  371 (472)
T ss_dssp             HHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHH
T ss_pred             HHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHH
Confidence            32                   2356788888887766443 56788889999999999999999999999875443321 


Q ss_pred             -HHHHHHH-HHhhcCCHHHHHHHHHHHHHCC-----------------------CCCChhhHHHHHHHHHhcCCHHHHHH
Q 045814          341 -TYNSMIH-GYCRIDNLEEAKRLHKEMLDKG-----------------------YGETTVTYNTLIAGLCLHGRTDEAYH  395 (427)
Q Consensus       341 -~~~~li~-~~~~~g~~~~a~~~~~~m~~~~-----------------------~~p~~~~~~~li~~~~~~g~~~~A~~  395 (427)
                       .+..+.. .+...|+.++|...|++..+..                       -+.+..+|..+...|...|++++|.+
T Consensus       372 ~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~  451 (472)
T 4g1t_A          372 LLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADE  451 (472)
T ss_dssp             HHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC----
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence             2222222 2346789999999988876542                       12356788899999999999999999


Q ss_pred             HHHHHHHCC-CCCCHhHH
Q 045814          396 LFEEMAQKG-IFRDVITY  412 (427)
Q Consensus       396 ~~~~m~~~g-~~p~~~~~  412 (427)
                      .|++..+.| ..|+..+|
T Consensus       452 ~y~kALe~~~~~p~a~~~  469 (472)
T 4g1t_A          452 DSERGLESGSLIPSASSW  469 (472)
T ss_dssp             ------------------
T ss_pred             HHHHHHhcCCCCCcHhhc
Confidence            999988764 34554443

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.67  E-value=1.8e-14  Score=124.91  Aligned_cols=223  Identities=12%  Similarity=0.023  Sum_probs=120.5

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCc--C----HhhHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFG--S----IKTWNS  178 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p--~----~~~~~~  178 (427)
                      ...+..+...+...|++++|...+++. ....+...|..+..++...|++++|.+.|++..+.....  +    ..++..
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   84 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR   84 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence            345667777778888888888887762 111667778888888888888888888888777643221  1    466667


Q ss_pred             HHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          179 ALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       179 ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      +...+...|++++|...|+.+.+...-...+...|++++|...++++...... +...+..+...+...|++++|...++
T Consensus        85 l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~  163 (258)
T 3uq3_A           85 IGNAYHKLGDLKKTIEYYQKSLTEHRTADILTKLRNAEKELKKAEAEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYT  163 (258)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHcccHHHHHHHHHHHHhcCchhHHHHHHhHHHHHHHHHHHHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            77777777777777777666665443344444445555555555544443211 23344444444444444444444444


Q ss_pred             HHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          259 TMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       259 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      +..+... .+..++..+...|.+.|++++|...|++..+.... +...|..+...+.+.|++++|...+++..
T Consensus       164 ~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~a~  234 (258)
T 3uq3_A          164 EMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATAQIAVKEYASALETLDAAR  234 (258)
T ss_dssp             HHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            4444321 12334444444444444444444444444333211 23334444444444444444444444433

>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}

Probab=99.66  E-value=6.6e-14  Score=121.35  Aligned_cols=228  Identities=12%  Similarity=0.077  Sum_probs=186.7

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      ...|..+...+...|++++|...|++..+..  .+...+..+..++...|++++|...++.+.+..              
T Consensus         5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--------------   68 (258)
T 3uq3_A            5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQG--------------   68 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH--------------
T ss_pred             HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhC--------------
Confidence            4578888999999999999999999999887  688888888888888888888888877655320              


Q ss_pred             HHHHHHHHHHCCCCCC----HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHH
Q 045814          218 GYELLRQVLEDGLVPE----NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFN  293 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~  293 (427)
                              ...  .++    ..++..+...+...|++++|...+++..+..  |+.       ..+.+.|++++|...++
T Consensus        69 --------~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~-------~~~~~~~~~~~a~~~~~  129 (258)
T 3uq3_A           69 --------REM--RADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLTEH--RTA-------DILTKLRNAEKELKKAE  129 (258)
T ss_dssp             --------HHT--TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCH-------HHHHHHHHHHHHHHHHH
T ss_pred             --------ccc--ccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--chh-------HHHHHHhHHHHHHHHHH
Confidence                    011  111    4678888899999999999999999988864  332       45667788999999999


Q ss_pred             HHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC
Q 045814          294 DLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET  373 (427)
Q Consensus       294 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~  373 (427)
                      .+.+.... +...+..+...+...|++++|...++++.+... .+..++..+..+|...|++++|...+++..+.. +.+
T Consensus       130 ~~~~~~~~-~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~  206 (258)
T 3uq3_A          130 AEAYVNPE-KAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNF  206 (258)
T ss_dssp             HHHHCCHH-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTC
T ss_pred             HHHHcCcc-hHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHH
Confidence            99876433 566788889999999999999999999988743 367788999999999999999999999998864 335


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ...|..+...|...|++++|.+.+++..+.
T Consensus       207 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~  236 (258)
T 3uq3_A          207 VRAYIRKATAQIAVKEYASALETLDAARTK  236 (258)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence            788999999999999999999999998775

>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}

Probab=99.65  E-value=9.2e-13  Score=125.09  Aligned_cols=322  Identities=11%  Similarity=-0.028  Sum_probs=229.1

Q ss_pred             CCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--------C--CCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcC--
Q 045814          102 FSPDLVSCNVLFDSLVEARAFKVAMDFLDST--------G--FSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMG--  168 (427)
Q Consensus       102 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~--~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g--  168 (427)
                      .......||.|..++...|++++|++.|++.        +  ..| ...+|+.+..+|...|++++|...|++..+..  
T Consensus        47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~  126 (472)
T 4g1t_A           47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK  126 (472)
T ss_dssp             ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred             ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence            3445678999999999999999999998752        1  123 46689999999999999999999999876531  


Q ss_pred             -----CCcCHhhHHHHHHHHHHc--CChhHHHHHHHHHHhcch-----------hHHHHHhcCChhHHHHHHHHHHHCCC
Q 045814          169 -----VFGSIKTWNSALLGCIKI--DRTDLVWKLYHDLIESGY-----------LIQAFCNDGKVSEGYELLRQVLEDGL  230 (427)
Q Consensus       169 -----~~p~~~~~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~-----------l~~~~~~~g~~~~a~~~~~~~~~~~~  230 (427)
                           ......++..+..++...  +++++|...|++.++.+.           +...+...++.++|++.+++......
T Consensus       127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p  206 (472)
T 4g1t_A          127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNP  206 (472)
T ss_dssp             SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCS
T ss_pred             cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCC
Confidence                 011345676666666654  468999999999887531           22234566888999999999887654


Q ss_pred             CCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 045814          231 VPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM  306 (427)
Q Consensus       231 ~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  306 (427)
                      . +..++..+...+..    .+++++|.+.+++...... .+..++..+...|.+.|++++|...|++..+.... +..+
T Consensus       207 ~-~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~  283 (472)
T 4g1t_A          207 D-NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAP-GVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYL  283 (472)
T ss_dssp             S-CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHH
T ss_pred             c-chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCc-cHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHH
Confidence            3 55666666555544    4678899999998887643 35678899999999999999999999999887443 4556


Q ss_pred             HHHHHHHHHcc-------------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          307 YTTVIHGLCKM-------------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       307 ~~~li~~~~~~-------------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +..+...|...                   +..++|...+++..+... .+..++..+...|...|++++|...|++..+
T Consensus       284 ~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~  362 (472)
T 4g1t_A          284 HCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAND-NLFRVCSILASLHALADQYEEAEYYFQKEFS  362 (472)
T ss_dssp             HHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHCT-TTCCCHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcCC-chhhhhhhHHHHHHHhccHHHHHHHHHHHHh
Confidence            66666555322                   235678888888877642 3456788899999999999999999999988


Q ss_pred             CCCCCCh--hhHHHHHH-HHHhcCCHHHHHHHHHHHHHCCC-----------------------CCCHhHHHHHHHHHHh
Q 045814          368 KGYGETT--VTYNTLIA-GLCLHGRTDEAYHLFEEMAQKGI-----------------------FRDVITYNTLIQGYCK  421 (427)
Q Consensus       368 ~~~~p~~--~~~~~li~-~~~~~g~~~~A~~~~~~m~~~g~-----------------------~p~~~~~~~li~~~~~  421 (427)
                      ....+..  ..+..+.. .+...|++++|+..|++..+...                       +.+..+|..+-..|..
T Consensus       363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~  442 (472)
T 4g1t_A          363 KELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSEALHVLAFLQEL  442 (472)
T ss_dssp             SCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHH
T ss_pred             cCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence            6543322  12333332 23577999999999988765421                       2245677778788888


Q ss_pred             cCCCCC
Q 045814          422 EGKIVN  427 (427)
Q Consensus       422 ~g~~~e  427 (427)
                      .|++++
T Consensus       443 ~g~~~~  448 (472)
T 4g1t_A          443 NEKMQQ  448 (472)
T ss_dssp             HHHCC-
T ss_pred             cCCHHH
Confidence            777654

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.60  E-value=6.4e-13  Score=114.88  Aligned_cols=204  Identities=12%  Similarity=0.080  Sum_probs=164.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+... .+...+..+...|...|++
T Consensus        44 a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~la~~~~~~g~~  121 (252)
T 2ho1_A           44 GLGYLQRGNTEQAKVPLRKALEIDP-SSADAHAALAVVFQTEMEPKLADEEYRKALASDS-RNARVLNNYGGFLYEQKRY  121 (252)
T ss_dssp             HHHHHHTTCTGGGHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCChHHHHHHHHHHHhcCC-ChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHHhHH
Confidence            3445566666666666666665433 2677888999999999999999999999888753 3677888999999999999


Q ss_pred             HHHHHHHHHHHhCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      ++|.+.|+++.+.+..| +...+..+...+...|++++|...++++.+... .+..++..+...|...|++++|...++.
T Consensus       122 ~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~  200 (252)
T 2ho1_A          122 EEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMADLLYKEREYVPARQYYDL  200 (252)
T ss_dssp             HHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence            99999999998733344 456788888999999999999999999988742 3577888999999999999999999999


Q ss_pred             HHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814          365 MLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL  415 (427)
Q Consensus       365 m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  415 (427)
                      +.+.. +.+...+..+...+...|++++|.++++++.+.  .|+...+..+
T Consensus       201 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~  248 (252)
T 2ho1_A          201 FAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF  248 (252)
T ss_dssp             HHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred             HHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence            98763 346778888999999999999999999999885  4554444333

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=1.1e-13  Score=117.15  Aligned_cols=188  Identities=14%  Similarity=0.038  Sum_probs=134.9

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-----
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS-----  282 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-----  282 (427)
                      .+...|++++|...|++.....+. +...+..+...+.+.|++++|...+++..+..+ .+...+..+...+.+.     
T Consensus        14 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~   91 (217)
T 2pl2_A           14 QLYALGRYDAALTLFERALKENPQ-DPEALYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAE   91 (217)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTSSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCS
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhh
Confidence            344555566666666666655433 677788888888888888888888888887743 2566778888888888     


Q ss_pred             ------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHH
Q 045814          283 ------RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLE  356 (427)
Q Consensus       283 ------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  356 (427)
                            |++++|...|++..+.... +...+..+...+...|++++|+..+++..+..  .+...+..+..+|...|+++
T Consensus        92 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~  168 (217)
T 2pl2_A           92 DRERGKGYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLD  168 (217)
T ss_dssp             SHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHH
T ss_pred             hhcccccCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHH
Confidence                  8999999999988876543 56778888888889999999999999988877  57788888888899999999


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +|...|++..+.. +.+...+..+...+...|++++|.+.|++..
T Consensus       169 ~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          169 EALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            9999999888763 2367778888888889999999988887654

>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}

Probab=99.60  E-value=1.1e-13  Score=117.11  Aligned_cols=115  Identities=10%  Similarity=-0.067  Sum_probs=56.1

Q ss_pred             CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 045814          248 KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW  327 (427)
Q Consensus       248 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  327 (427)
                      |++++|...+++..+..+. +...+..+...|...|++++|...|++..+..  .+...+..+..++...|++++|...+
T Consensus        98 g~~~~A~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~  174 (217)
T 2pl2_A           98 GYLEQALSVLKDAERVNPR-YAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQY  174 (217)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHH
Confidence            5556666666555554321 34455555556666666666666666665554  35555555666666666666666666


Q ss_pred             HHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          328 FEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       328 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      ++..+.. +.+...+..+...+...|++++|...+++..
T Consensus       175 ~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  212 (217)
T 2pl2_A          175 AKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH  212 (217)
T ss_dssp             HHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred             HHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence            6665542 1234455555556666666666666655543

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.59  E-value=3.4e-12  Score=111.88  Aligned_cols=228  Identities=10%  Similarity=-0.068  Sum_probs=175.8

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS  216 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~  216 (427)
                      ++.++..+...|...|++++|.+.|++..+.+   +...+..+...+...                      ....++++
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g----------------------~~~~~~~~   59 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQG----------------------QGVEKNLK   59 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHT----------------------SSSCCCHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcC----------------------CCcCCCHH
Confidence            56778888888999999999999999888732   445566666555550                      00044445


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHH
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEA  288 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a  288 (427)
                      +|...|++..+.+   +...+..+...|..    .+++++|.+.|++..+.+   +...+..+...|..    .+++++|
T Consensus        60 ~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A  133 (273)
T 1ouv_A           60 KAASFYAKACDLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKA  133 (273)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             HHHHHHHHHHHCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHH
Confidence            5555555555544   56677778888888    889999999999888875   56778888888888    8999999


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHH
Q 045814          289 YRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKR  360 (427)
Q Consensus       289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~  360 (427)
                      ...|++..+.+   +...+..+...|..    .+++++|...+++..+.+   +...+..+...|..    .+++++|..
T Consensus       134 ~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~  207 (273)
T 1ouv_A          134 VEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALA  207 (273)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHH
T ss_pred             HHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence            99999988875   55677777778877    889999999999988874   45677778888888    899999999


Q ss_pred             HHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 045814          361 LHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKG  404 (427)
Q Consensus       361 ~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g  404 (427)
                      .+++..+.+   +...+..+...|..    .+++++|.+.|++..+.|
T Consensus       208 ~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          208 RYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            999988874   36777888888888    889999999999888865

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.59  E-value=1.5e-11  Score=124.97  Aligned_cols=300  Identities=13%  Similarity=0.123  Sum_probs=167.4

Q ss_pred             HhcCChHHHHHHHHHHhhcCC-CCCCHhhHHHHHHHH---------------------------HHcCChHHHHHHHHhc
Q 045814           81 KQQNNVLLSIRFFQWLHSHYG-FSPDLVSCNVLFDSL---------------------------VEARAFKVAMDFLDST  132 (427)
Q Consensus        81 ~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~ll~~~---------------------------~~~~~~~~a~~~~~~~  132 (427)
                      ...+.+..|+++++.+..+.. +.-+...-+.++...                           ...|.+++|..+|++.
T Consensus       996 ~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIkaD~~Rv~eyI~kLd~~d~~eIA~Iai~lglyEEAf~IYkKa 1075 (1630)
T 1xi4_A          996 MTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKADRTRVMEYINRLDNYDAPDIANIAISNELFEEAFAIFRKF 1075 (1630)
T ss_pred             HhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHhChhhHHHHHHHhhhccHHHHHHHHHhCCCHHHHHHHHHHc
Confidence            356778888888887753322 223344444444433                           3445555555555554


Q ss_pred             CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc---hhHHHH
Q 045814          133 GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG---YLIQAF  209 (427)
Q Consensus       133 ~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---~l~~~~  209 (427)
                      +  -.....+.++.   ..+++++|.++.++..      +..+|..+..++...|++++|...|.+.....   -++..+
T Consensus      1076 ~--~~~~A~~VLie---~i~nldrAiE~Aervn------~p~vWsqLAKAql~~G~~kEAIdsYiKAdD~say~eVa~~~ 1144 (1630)
T 1xi4_A         1076 D--VNTSAVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKADDPSSYMEVVQAA 1144 (1630)
T ss_pred             C--CHHHHHHHHHH---HHhhHHHHHHHHHhcC------CHHHHHHHHHHHHhCCCHHHHHHHHHhcCChHHHHHHHHHH
Confidence            3  11111222222   3455555555555331      35566666666666666666666665543221   255666


Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY  289 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  289 (427)
                      .+.|++++|.+.|....+..  ++....+.++.+|++.+++++.....    .   .++...|..+...|...|++++|.
T Consensus      1145 ~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~ 1215 (1630)
T 1xi4_A         1145 NTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAK 1215 (1630)
T ss_pred             HHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHH
Confidence            66666666666666555433  22222223566666666655433332    1   234445555666666666666666


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 045814          290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG  369 (427)
Q Consensus       290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  369 (427)
                      .+|...         ..|..+...+.+.|++++|.+.+++.      .+..+|..+-.+|...|++..|......+    
T Consensus      1216 ~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~~Ef~LA~~cgl~I---- 1276 (1630)
T 1xi4_A         1216 LLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHI---- 1276 (1630)
T ss_pred             HHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhhhHHHHHHHHHHhh----
Confidence            666653         25666666666666666666666654      24456666666666666666666544432    


Q ss_pred             CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHh
Q 045814          370 YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCK  421 (427)
Q Consensus       370 ~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~  421 (427)
                       ..++..+..++..|.+.|.+++|+.+++...... +-....|+-|...+++
T Consensus      1277 -iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A         1277 -VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred             -hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence             2356667788888888899999999887776432 1123345444444444

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.58  E-value=1.3e-12  Score=110.58  Aligned_cols=206  Identities=10%  Similarity=0.011  Sum_probs=160.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-CC
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS-RK  284 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-~~  284 (427)
                      ...+...|++++|.+.++++..... .+...+..+...+...|++++|.+.++++.+... .+..++..+...+... |+
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~   92 (225)
T 2vq2_A           15 AMEYMRGQDYRQATASIEDALKSDP-KNELAWLVRAEIYQYLKVNDKAQESFRQALSIKP-DSAEINNNYGWFLCGRLNR   92 (225)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHTTTCC
T ss_pred             HHHHHHHhhHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHhcCc
Confidence            3344455555666666666555432 2567888899999999999999999999887643 3567888899999999 99


Q ss_pred             hHHHHHHHHHHHhCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK  363 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  363 (427)
                      +++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+... .+...+..+...|...|++++|...++
T Consensus        93 ~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~  171 (225)
T 2vq2_A           93 PAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQP-QFPPAFKELARTKMLAGQLGDADYYFK  171 (225)
T ss_dssp             HHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHcCCHHHHHHHHH
Confidence            9999999999987332333 56788888999999999999999999988642 357788889999999999999999999


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHH
Q 045814          364 EMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLI  416 (427)
Q Consensus       364 ~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li  416 (427)
                      .+.+.....+...+..+...+...|+.++|..+++.+.+.  .|+......++
T Consensus       172 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~--~p~~~~~~~~l  222 (225)
T 2vq2_A          172 KYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN--FPYSEELQTVL  222 (225)
T ss_dssp             HHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHh
Confidence            9887643146777888888889999999999999998764  45555544443

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.58  E-value=5.7e-13  Score=116.56  Aligned_cols=234  Identities=11%  Similarity=0.017  Sum_probs=126.8

Q ss_pred             hHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814          140 SLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY  219 (427)
Q Consensus       140 ~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~  219 (427)
                      .+......+...|++++|...|++..+.... +...+..+...+...|++++|...++                      
T Consensus         5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~----------------------   61 (272)
T 3u4t_A            5 VEFRYADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIE----------------------   61 (272)
T ss_dssp             CHHHHHHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHH----------------------
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHH----------------------
Confidence            3444555566666666666666666654322 33345544444444444444433333                      


Q ss_pred             HHHHHHHHCCCCC--CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814          220 ELLRQVLEDGLVP--ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE  297 (427)
Q Consensus       220 ~~~~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  297 (427)
                          +....+..+  ....|..+...+...|++++|.+.+++..+.... +..++..+...|...|++++|...|++..+
T Consensus        62 ----~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~  136 (272)
T 3u4t_A           62 ----TYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIR  136 (272)
T ss_dssp             ----HHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCC
T ss_pred             ----HHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhh
Confidence                333311111  1233556666666666666666666666654322 345666666666666666666666666655


Q ss_pred             CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCC-CCCC
Q 045814          298 RGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN---LEEAKRLHKEMLDKG-YGET  373 (427)
Q Consensus       298 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~-~~p~  373 (427)
                      .... +...|..+...+...+++++|...++++.+... .+...+..+...+...|+   +++|...+++..+.. -.|+
T Consensus       137 ~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~  214 (272)
T 3u4t_A          137 PTTT-DPKVFYELGQAYYYNKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGA  214 (272)
T ss_dssp             SSCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGG
T ss_pred             cCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccc
Confidence            5222 344555555223333466777777766666531 234555555666666665   666666666655431 1122


Q ss_pred             ------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          374 ------TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       374 ------~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                            ...|..+...|...|++++|.+.|++..+.
T Consensus       215 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~  250 (272)
T 3u4t_A          215 KYKDELIEANEYIAYYYTINRDKVKADAAWKNILAL  250 (272)
T ss_dssp             GGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence                  145666666777777777777777777664

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.58  E-value=1e-13  Score=121.48  Aligned_cols=244  Identities=10%  Similarity=-0.067  Sum_probs=143.7

Q ss_pred             HcCChHHHHHHHHhc-CCC----C-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhH
Q 045814          118 EARAFKVAMDFLDST-GFS----P-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDL  191 (427)
Q Consensus       118 ~~~~~~~a~~~~~~~-~~~----~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~  191 (427)
                      ..|++++|...+++. ...    | +..++..+...+...|++++|...|+++.+.... +..+|..+...+...|++++
T Consensus        17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~   95 (275)
T 1xnf_A           17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDA   95 (275)
T ss_dssp             CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHH
T ss_pred             ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHccCHHH
Confidence            446667777776652 211    1 2445666677777777777777777776665333 45556555555555555555


Q ss_pred             HHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhh
Q 045814          192 VWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFT  271 (427)
Q Consensus       192 a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~  271 (427)
                      |...|+++                          ...... +..++..+...+...|++++|...++++.+..  |+...
T Consensus        96 A~~~~~~a--------------------------l~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~  146 (275)
T 1xnf_A           96 AYEAFDSV--------------------------LELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPF  146 (275)
T ss_dssp             HHHHHHHH--------------------------HHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHH
T ss_pred             HHHHHHHH--------------------------HhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChH
Confidence            44444433                          332221 45667777777777888888888887777653  33333


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHH
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP---NEYTYNSMIHG  348 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~  348 (427)
                      ....+..+...|++++|...+.+...... ++...+ .++..+...++.++|...++++.......   +..++..+...
T Consensus       147 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~  224 (275)
T 1xnf_A          147 RSLWLYLAEQKLDEKQAKEVLKQHFEKSD-KEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKY  224 (275)
T ss_dssp             HHHHHHHHHHHHCHHHHHHHHHHHHHHSC-CCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHhcCC-cchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHH
Confidence            44444455666777888887766655422 233333 35666666777777777777765542110   14566777777


Q ss_pred             HhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 045814          349 YCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLF  397 (427)
Q Consensus       349 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~  397 (427)
                      |...|++++|...|++..+..  |+  .+.....++...|++++|++-+
T Consensus       225 ~~~~g~~~~A~~~~~~al~~~--p~--~~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          225 YLSLGDLDSATALFKLAVANN--VH--NFVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HHHTTCHHHHHHHHHHHHTTC--CT--TCHHHHHHHHHHHHHHHC----
T ss_pred             HHHcCCHHHHHHHHHHHHhCC--ch--hHHHHHHHHHHHHHHHhhHHHH
Confidence            777888888888888777652  32  2333355566667777776655

>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7

Probab=99.57  E-value=7.2e-11  Score=113.88  Aligned_cols=209  Identities=11%  Similarity=0.027  Sum_probs=161.8

Q ss_pred             HHHHHHHHHHhcch--------hHHHHHh-------cCChh-------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 045814          191 LVWKLYHDLIESGY--------LIQAFCN-------DGKVS-------EGYELLRQVLEDGLVPENTAFNKLISRFCEKK  248 (427)
Q Consensus       191 ~a~~~~~~~~~~~~--------l~~~~~~-------~g~~~-------~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~  248 (427)
                      ++..+|++.+....        ++..+.+       .|+++       +|..++++....-.+-+...|..++..+.+.|
T Consensus       256 ~a~~~y~~al~~~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g  335 (530)
T 2ooe_A          256 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM  335 (530)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHhCCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcC
Confidence            56667777766521        3333443       68887       89999999886322236888999999999999


Q ss_pred             ChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCHHHHHH
Q 045814          249 NFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWLGDARK  325 (427)
Q Consensus       249 ~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~  325 (427)
                      ++++|..+|+++.+.  .|+  ...|...+..+.+.|++++|..+|++..+.... +...|...... +...|+.++|..
T Consensus       336 ~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~~~~~~A~~  412 (530)
T 2ooe_A          336 KYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCSKDKSVAFK  412 (530)
T ss_dssp             CHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHTCCHHHHHH
T ss_pred             CHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHcCChhHHHH
Confidence            999999999999986  343  258889999999999999999999999876322 22333322222 336899999999


Q ss_pred             HHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          326 MWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY-GET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       326 ~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      +|++..+.. +-+...|..++..+.+.|+.++|..+|++....+. .|+  ...|...+......|+.+.+.++++++.+
T Consensus       413 ~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~  491 (530)
T 2ooe_A          413 IFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT  491 (530)
T ss_dssp             HHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            999998863 23578899999999999999999999999998632 232  44888889988999999999999999887


Q ss_pred             C
Q 045814          403 K  403 (427)
Q Consensus       403 ~  403 (427)
                      .
T Consensus       492 ~  492 (530)
T 2ooe_A          492 A  492 (530)
T ss_dssp             H
T ss_pred             H
Confidence            4

>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1

Probab=99.57  E-value=7.1e-12  Score=109.82  Aligned_cols=224  Identities=9%  Similarity=-0.046  Sum_probs=175.5

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHh----cCChhHHHHHHHHHHhcCCCcCHhhHHHHH
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE----SGLIEEAFCAFSKLKEMGVFGSIKTWNSAL  180 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll  180 (427)
                      +..++..+...+...|++++|.+.|++.-..-+..++..+...|..    .+++++|.+.|++..+.+   +...+..+.
T Consensus         5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg   81 (273)
T 1ouv_A            5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHLLG   81 (273)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred             ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHHHH
Confidence            5778888899999999999999999974324467788899999999    999999999999999875   667777777


Q ss_pred             HHHHH----cCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhH
Q 045814          181 LGCIK----IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGR  252 (427)
Q Consensus       181 ~~~~~----~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~  252 (427)
                      ..|..    .+++++|...                          |++..+.+   +...+..+...|..    .+++++
T Consensus        82 ~~~~~g~~~~~~~~~A~~~--------------------------~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~  132 (273)
T 1ouv_A           82 NLYYSGQGVSQNTNKALQY--------------------------YSKACDLK---YAEGCASLGGIYHDGKVVTRDFKK  132 (273)
T ss_dssp             HHHHHTSSSCCCHHHHHHH--------------------------HHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred             HHHhCCCCcccCHHHHHHH--------------------------HHHHHHcC---CccHHHHHHHHHHcCCCcccCHHH
Confidence            66666    5555555544                          44444443   55677777778887    888888


Q ss_pred             HHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHH
Q 045814          253 VSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDAR  324 (427)
Q Consensus       253 a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~  324 (427)
                      |.+.|++..+.+   +...+..+...|..    .+++++|...|++..+.+   +...+..+...|..    .+++++|.
T Consensus       133 A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~  206 (273)
T 1ouv_A          133 AVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEAL  206 (273)
T ss_dssp             HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHH
T ss_pred             HHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            888888888775   45667777777777    888889999888887764   45677778888888    88899999


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHCC
Q 045814          325 KMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDKG  369 (427)
Q Consensus       325 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~  369 (427)
                      ..+++..+.+   +...+..+...|..    .+++++|.+.|++..+.|
T Consensus       207 ~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~  252 (273)
T 1ouv_A          207 ARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG  252 (273)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred             HHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence            9998888874   25667777777877    888899999888888764

>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A

Probab=99.57  E-value=2.9e-12  Score=110.76  Aligned_cols=201  Identities=12%  Similarity=0.007  Sum_probs=132.0

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      ...|..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|.+.++++.                 
T Consensus        37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~-----------------   98 (252)
T 2ho1_A           37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPS-SADAHAALAVVFQTEMEPKLADEEYRKAL-----------------   98 (252)
T ss_dssp             HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCC-hHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----------------
Confidence            345666666777777777777777777665322 45555555555555555555554444433                 


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                               .... .+...+..+...+...|++++|.+.++++.+.+..| +...+..+...+.+.|++++|...|+++.
T Consensus        99 ---------~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~  168 (252)
T 2ho1_A           99 ---------ASDS-RNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSL  168 (252)
T ss_dssp             ---------HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------HHCc-CcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence                     2221 145566677777777777777777777776632233 34566677777777788888888877776


Q ss_pred             hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +.... +...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.++++.+.+.
T Consensus       169 ~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~  238 (252)
T 2ho1_A          169 RLNRN-QPSVALEMADLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL  238 (252)
T ss_dssp             HHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             hcCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence            65432 46677777777778888888888887777653 235566777777777788888888888877765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.56  E-value=2e-12  Score=118.55  Aligned_cols=228  Identities=10%  Similarity=0.044  Sum_probs=130.1

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCC-hhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGL-IEEAFCAFSKLKEMGVFGSIKTWNSALLG  182 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~-~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  182 (427)
                      ...|+.+..++.+.|++++|+..+++ ....| +..+|+.+..++...|+ +++|+..|++..+.... +...|+.+..+
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~-~~~a~~~~g~~  175 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  175 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCC-CHHHHHHHHHH
Confidence            44555566666666666666666665 23333 34556666666666664 66666666666665433 45555555544


Q ss_pred             HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814          183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA  262 (427)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  262 (427)
                      +...|++                          ++|+..|++++..... +...|..+..++.+.|++++|+..++++++
T Consensus       176 ~~~~g~~--------------------------~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~  228 (382)
T 2h6f_A          176 VEWLRDP--------------------------SQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK  228 (382)
T ss_dssp             HHHHTCC--------------------------TTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHccCH--------------------------HHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence            4444433                          3333444444443332 556666666666667777777777777666


Q ss_pred             CCCCCCHhhHHHHHHHHHh-cCChHHH-----HHHHHHHHhCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHHcC
Q 045814          263 RNRAPDNFTYEEVINGLCK-SRKRLEA-----YRVFNDLKERGYVPDTVMYTTVIHGLCKMG--WLGDARKMWFEMIHKG  334 (427)
Q Consensus       263 ~~~~~~~~~~~~ll~~~~~-~~~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~~  334 (427)
                      .... +...|+.+..++.+ .|..++|     +..|++..+.... +...|+.+...+...|  ++++|+..+.++ +. 
T Consensus       229 l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-  304 (382)
T 2h6f_A          229 EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-  304 (382)
T ss_dssp             HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-
T ss_pred             hCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-
Confidence            5432 45566666666666 4444555     3566666554332 4556666666666655  466666666665 22 


Q ss_pred             CCCCHHHHHHHHHHHhhcC---------CHHHHHHHHHHH
Q 045814          335 LLPNEYTYNSMIHGYCRID---------NLEEAKRLHKEM  365 (427)
Q Consensus       335 ~~p~~~~~~~li~~~~~~g---------~~~~a~~~~~~m  365 (427)
                      ...+...+..+...|.+.|         ..++|.++++++
T Consensus       305 ~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l  344 (382)
T 2h6f_A          305 SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEIL  344 (382)
T ss_dssp             TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHH
Confidence            2234455666666666553         246666666666

>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}

Probab=99.56  E-value=3.4e-12  Score=107.93  Aligned_cols=202  Identities=8%  Similarity=-0.072  Sum_probs=143.0

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      ...+..+...+...|++++|.+.|+++.+.... +...+..+...+...|++++|...++.+.                 
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~-----------------   69 (225)
T 2vq2_A            8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPK-NELAWLVRAEIYQYLKVNDKAQESFRQAL-----------------   69 (225)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHcCChHHHHHHHHHHH-----------------
Confidence            456777777788888888888888877765432 45566666666665555555555544433                 


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          218 GYELLRQVLEDGLVPENTAFNKLISRFCEK-KNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                               .... .+..++..+...+... |++++|...++++.+.+..|+ ...+..+...+...|++++|...|+++
T Consensus        70 ---------~~~~-~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  139 (225)
T 2vq2_A           70 ---------SIKP-DSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRS  139 (225)
T ss_dssp             ---------HHCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             ---------HhCC-CChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence                     3222 2556777778888888 888888888888877322333 467777888888888888888888888


Q ss_pred             HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .+.... +...+..+...+...|++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+.
T Consensus       140 ~~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~  211 (225)
T 2vq2_A          140 LAAQPQ-FPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN  211 (225)
T ss_dssp             HHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHhCCC-CchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence            766432 566778888888888888888888888877643145666777777788888888888888887754

>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A

Probab=99.56  E-value=2e-11  Score=124.05  Aligned_cols=304  Identities=13%  Similarity=0.124  Sum_probs=238.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCCh
Q 045814           75 FFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLI  154 (427)
Q Consensus        75 ~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~  154 (427)
                      -+..++...+.++.|..+|+...      -.....+.++.   ..+++++|.++.++..   +..+|..+..++.+.|++
T Consensus      1054 eIA~Iai~lglyEEAf~IYkKa~------~~~~A~~VLie---~i~nldrAiE~Aervn---~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A         1054 DIANIAISNELFEEAFAIFRKFD------VNTSAVQVLIE---HIGNLDRAYEFAERCN---EPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred             HHHHHHHhCCCHHHHHHHHHHcC------CHHHHHHHHHH---HHhhHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCH
Confidence            34556667788899999998862      12222333332   7789999999998763   588999999999999999


Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-------hhHHHHHhcCChhHHHHHHHHHHH
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-------YLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      ++|.+.|.+.      -|...|..++..+.+.|++++|.+++....+..       .++.+|++.+++++.....    .
T Consensus      1122 kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI----~ 1191 (1630)
T 1xi4_A         1122 KEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI----N 1191 (1630)
T ss_pred             HHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHH----h
Confidence            9999999664      378889999999999999999999998866542       3888999999988644442    2


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMY  307 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~  307 (427)
                         .++...|..+...|...|++++|...|...         ..|..+...|.+.|++++|.+.+++..      +..+|
T Consensus      1192 ---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~------n~~aW 1253 (1630)
T 1xi4_A         1192 ---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN------STRTW 1253 (1630)
T ss_pred             ---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC------CHHHH
Confidence               346667888999999999999999999984         489999999999999999999999872      67899


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      ..+..+|...|++..|......     +..+...+..++..|.+.|.+++|..+++...... +-....|+-+...|++.
T Consensus      1254 kev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy 1327 (1630)
T 1xi4_A         1254 KEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF 1327 (1630)
T ss_pred             HHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhC
Confidence            9999999999999999887654     33356677899999999999999999998887654 33456777777777764


Q ss_pred             --CCHHHHHHHHHHHHHCCCCC------CHhHHHHHHHHHHhcCCCC
Q 045814          388 --GRTDEAYHLFEEMAQKGIFR------DVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       388 --g~~~~A~~~~~~m~~~g~~p------~~~~~~~li~~~~~~g~~~  426 (427)
                        ++..++.++|..-.  +++|      +...|.-++--|.+.|+++
T Consensus      1328 ~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~d 1372 (1630)
T 1xi4_A         1328 KPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYD 1372 (1630)
T ss_pred             CHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHH
Confidence              44555555555322  2333      4567888999998888875

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.56  E-value=4.3e-13  Score=115.13  Aligned_cols=193  Identities=9%  Similarity=0.046  Sum_probs=153.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...+...|++++|...++++...... +...+..+...+...|++++|.+.++++.+... .+..++..+...|...|++
T Consensus        30 a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~  107 (243)
T 2q7f_A           30 MGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKALELDS-SAATAYYGAGNVYVVKEMY  107 (243)
T ss_dssp             ------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-cchHHHHHHHHHHHHhccH
Confidence            34455666677777777777664433 677888899999999999999999999887743 3677888899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...++++
T Consensus       108 ~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~  185 (243)
T 2q7f_A          108 KEAKDMFEKALRAGME-NGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEALSQFAAV  185 (243)
T ss_dssp             HHHHHHHHHHHHHTCC-SHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999999876543 67788889999999999999999999998774 336778888999999999999999999998


Q ss_pred             HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          366 LDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       366 ~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .+.. +.+..++..+...|...|++++|.+.++++.+.
T Consensus       186 ~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          186 TEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             HHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             HHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            8763 336788999999999999999999999999885

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.55  E-value=4.1e-13  Score=124.57  Aligned_cols=302  Identities=11%  Similarity=0.018  Sum_probs=192.7

Q ss_pred             CCCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-
Q 045814          103 SPDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPN-----PNSLELYIQCLCESGLIEEAFCAFSKLKEM----GVFG-  171 (427)
Q Consensus       103 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-  171 (427)
                      ......+......+...|++++|...+++. ...|+     ..++..+...|...|++++|...|++....    +-.| 
T Consensus         6 ~~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~   85 (406)
T 3sf4_A            6 EASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG   85 (406)
T ss_dssp             CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence            455666777777888888888888888762 22332     346777888888888888888888876543    1111 


Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC--
Q 045814          172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN--  249 (427)
Q Consensus       172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~--  249 (427)
                      ...++..+...+...|++++|...+++..+.                   ....  ........++..+...+...|+  
T Consensus        86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~-------------------~~~~--~~~~~~~~~~~~l~~~~~~~g~~~  144 (406)
T 3sf4_A           86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDI-------------------SREL--NDKVGEARALYNLGNVYHAKGKSF  144 (406)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HHHH--TCHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH-------------------HHhc--ccccchHHHHHHHHHHHHHcCCcc
Confidence            2445666666777777777777766655432                   1110  0000113366667777777777  


Q ss_pred             ------------------hhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC--
Q 045814          250 ------------------FGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD--  303 (427)
Q Consensus       250 ------------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~--  303 (427)
                                        +++|.+.+++....    +..+ ...++..+...|...|++++|...+++..+.... ++  
T Consensus       145 ~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~  224 (406)
T 3sf4_A          145 GCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKA  224 (406)
T ss_dssp             C-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             cccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcH
Confidence                              77777777765432    1111 1346777777888888888888888877543111 11  


Q ss_pred             --hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCC
Q 045814          304 --TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGE  372 (427)
Q Consensus       304 --~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p  372 (427)
                        ..++..+...|...|++++|...+++.....    ..+. ..++..+...|...|++++|...+++..+.    +..+
T Consensus       225 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~  304 (406)
T 3sf4_A          225 AERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRI  304 (406)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcH
Confidence              2367777788888888888888888776431    1111 446677778888888888888888877643    1111


Q ss_pred             -ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCC-CCHhHHHHHHHHHHhcCCC
Q 045814          373 -TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK----GIF-RDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       373 -~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----g~~-p~~~~~~~li~~~~~~g~~  425 (427)
                       ...++..+...|...|++++|.+.+++..+.    |-. ....++..+...+...|+.
T Consensus       305 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          305 GEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence             1456777788888888888888888876543    211 1244666666777666654

>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}

Probab=99.55  E-value=2.4e-12  Score=112.54  Aligned_cols=217  Identities=11%  Similarity=0.068  Sum_probs=172.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcC
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSR  283 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~  283 (427)
                      ...+...|++++|+..+++..+.... +...+..+..++...|++++|.+.+++..+....++  ...|..+...|...|
T Consensus        10 a~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~   88 (272)
T 3u4t_A           10 ADFLFKNNNYAEAIEVFNKLEAKKYN-SPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKG   88 (272)
T ss_dssp             HHHHHTTTCHHHHHHHHHHHHHTTCC-CSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcc
Confidence            45567788888888888888876543 556888899999999999999999999988432222  234889999999999


Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH
Q 045814          284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHK  363 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  363 (427)
                      ++++|...|++..+.... +..+|..+...|...|++++|...+++..+.. +.+..++..+...+...+++++|.+.++
T Consensus        89 ~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~  166 (272)
T 3u4t_A           89 QDSLAIQQYQAAVDRDTT-RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFV  166 (272)
T ss_dssp             CHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHhcCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999887543 66789999999999999999999999998873 3356677777734444569999999999


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCC-CCCC------HhHHHHHHHHHHhcCCCC
Q 045814          364 EMLDKGYGETTVTYNTLIAGLCLHGR---TDEAYHLFEEMAQKG-IFRD------VITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       364 ~m~~~~~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~~~~~li~~~~~~g~~~  426 (427)
                      ++.+.. +.+...+..+...+...|+   +++|...+++..+.. -.|+      ...|..+-..|.+.|+++
T Consensus       167 ~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~  238 (272)
T 3u4t_A          167 KVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKV  238 (272)
T ss_dssp             HHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHH
T ss_pred             HHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHH
Confidence            999863 2347788888888988888   888999998887642 1233      257888888898888765

>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...

Probab=99.54  E-value=3.7e-12  Score=116.67  Aligned_cols=248  Identities=8%  Similarity=0.023  Sum_probs=196.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC-hhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR-TDLVWKLYHDLIESGYLIQAFCNDGKVS  216 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~l~~~~~~~g~~~  216 (427)
                      ...|+.+...+.+.|++++|++.|++..+.... +...|+.+..++...|+ +++|+                       
T Consensus        97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~-~~~a~~~~g~~l~~~g~d~~eAl-----------------------  152 (382)
T 2h6f_A           97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQKDLHEEM-----------------------  152 (382)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHH-----------------------
T ss_pred             HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcccCHHHHH-----------------------
Confidence            557888999999999999999999999987554 67778877777766654 55554                       


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                         ..+++.+..... +...|..+..++...|++++|+..|+++++.... +...|..+..++.+.|++++|+..|+++.
T Consensus       153 ---~~~~~al~l~P~-~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al  227 (382)
T 2h6f_A          153 ---NYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLL  227 (382)
T ss_dssp             ---HHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHH
T ss_pred             ---HHHHHHHHHCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence               445555554443 7788999999999999999999999999988543 67899999999999999999999999999


Q ss_pred             hCCCCCChhhHHHHHHHHHc-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHhhcC--CHHHHHHHHHHHHHC
Q 045814          297 ERGYVPDTVMYTTVIHGLCK-MGWLGDA-----RKMWFEMIHKGLLPNEYTYNSMIHGYCRID--NLEEAKRLHKEMLDK  368 (427)
Q Consensus       297 ~~~~~p~~~~~~~li~~~~~-~g~~~~a-----~~~~~~m~~~~~~p~~~~~~~li~~~~~~g--~~~~a~~~~~~m~~~  368 (427)
                      +.... +...|+.+..++.+ .|..++|     +..+++..+.... +...|+.+...+...|  ++++|.+.+.++ +.
T Consensus       228 ~l~P~-~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~  304 (382)
T 2h6f_A          228 KEDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP  304 (382)
T ss_dssp             HHCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT
T ss_pred             HhCCC-CHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc
Confidence            88655 77899999999998 6665777     5888888886432 5678888888898888  689999999988 43


Q ss_pred             CCCCChhhHHHHHHHHHhcC---------CHHHHHHHHHHH-HHCCCCCCH-hHHHHHHHHHH
Q 045814          369 GYGETTVTYNTLIAGLCLHG---------RTDEAYHLFEEM-AQKGIFRDV-ITYNTLIQGYC  420 (427)
Q Consensus       369 ~~~p~~~~~~~li~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~-~~~~~li~~~~  420 (427)
                       .+.+...+..+...|.+.|         ..++|.++|+++ .+  +.|.. ..|..+...+.
T Consensus       305 -~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~--~DP~r~~~w~~~~~~l~  364 (382)
T 2h6f_A          305 -SHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE--KDTIRKEYWRYIGRSLQ  364 (382)
T ss_dssp             -TCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT--TCGGGHHHHHHHHHHHH
T ss_pred             -CCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH--hCchhHHHHHHHHHHHH
Confidence             3346788889999998874         358999999998 55  34543 45555555544

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.54  E-value=5.1e-13  Score=124.44  Aligned_cols=277  Identities=12%  Similarity=0.031  Sum_probs=192.3

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-H----HhHHHHHHHHHhcCChhHHHHHHHHHHhc----C-CCcCHh
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-P----NSLELYIQCLCESGLIEEAFCAFSKLKEM----G-VFGSIK  174 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g-~~p~~~  174 (427)
                      ...+..+...+...|++++|...+++ ....|+ .    ..|..+...|...|++++|.+.|++..+.    + ......
T Consensus        48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~  127 (411)
T 4a1s_A           48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK  127 (411)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence            44555666777888888888888876 222333 2    46778888888888888888888877653    1 112345


Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-----
Q 045814          175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN-----  249 (427)
Q Consensus       175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~-----  249 (427)
                      ++..+...|...|++++|...+++..+.                   .....  .......++..+...|...|+     
T Consensus       128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~~~  186 (411)
T 4a1s_A          128 SSGNLGNTLKVMGRFDEAAICCERHLTL-------------------ARQLG--DRLSEGRALYNLGNVYHAKGKHLGQR  186 (411)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HHHHT--CHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHH-------------------HHHhh--chHHHHHHHHHHHHHHHHcCcccccc
Confidence            6666777777777777777776655431                   11110  001134467777888888888     


Q ss_pred             ------------hhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhH
Q 045814          250 ------------FGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMY  307 (427)
Q Consensus       250 ------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~  307 (427)
                                  +++|.+.+++..+.    +..+ ...++..+...|...|++++|...+++..+.... ++    ..++
T Consensus       187 ~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  266 (411)
T 4a1s_A          187 NPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRAN  266 (411)
T ss_dssp             STTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             cchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHH
Confidence                        88888888776542    1111 2347778888899999999999999887653211 11    2377


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCC-----CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCChhhH
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLL-----PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GETTVTY  377 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~~~  377 (427)
                      ..+...|...|++++|...+++.......     ....++..+...|...|++++|...+++..+.    +. .....++
T Consensus       267 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  346 (411)
T 4a1s_A          267 SNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARAC  346 (411)
T ss_dssp             HHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHH
Confidence            88888999999999999999887754211     11456788888999999999999999988753    11 1124578


Q ss_pred             HHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          378 NTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       378 ~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..+...|...|++++|.+.+++..+.
T Consensus       347 ~~la~~~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          347 WSLGNAHSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhccHHHHHHHHHHHHHH
Confidence            88889999999999999999988764

>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1

Probab=99.52  E-value=1.2e-12  Score=112.30  Aligned_cols=199  Identities=14%  Similarity=0.051  Sum_probs=95.1

Q ss_pred             HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814          139 NSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG  218 (427)
Q Consensus       139 ~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a  218 (427)
                      ..|..+...+...|++++|...|+++.+.... +...+..+...+...|++++|...++++.                  
T Consensus        24 ~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~------------------   84 (243)
T 2q7f_A           24 MTGGQQMGRGSEFGDYEKAAEAFTKAIEENKE-DAIPYINFANLLSSVNELERALAFYDKAL------------------   84 (243)
T ss_dssp             ------------------CCTTHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHH------------------
T ss_pred             HHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH------------------
Confidence            34445555555555566666555555543222 34444444444444444444443333332                  


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKER  298 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  298 (427)
                              .... .+..++..+...+...|++++|.+.++++.+... .+...+..+...+.+.|++++|...++++.+.
T Consensus        85 --------~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~  154 (243)
T 2q7f_A           85 --------ELDS-SAATAYYGAGNVYVVKEMYKEAKDMFEKALRAGM-ENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL  154 (243)
T ss_dssp             --------HHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTC-CSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred             --------HcCC-cchHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence                    2111 1344555555555555666666666655555432 23445555555666666666666666665544


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ... +...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+.
T Consensus       155 ~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  222 (243)
T 2q7f_A          155 NEN-DTEARFQFGMCLANEGMLDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI  222 (243)
T ss_dssp             CTT-CHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH
T ss_pred             CCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc
Confidence            322 44555556666666666666666666665543 223455666666666666666666666666554

>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}

Probab=99.52  E-value=3.7e-13  Score=124.85  Aligned_cols=293  Identities=11%  Similarity=0.019  Sum_probs=206.8

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHhc-------CCCC-CHHhHHHHH
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPD--LVSCNVLFDSLVEARAFKVAMDFLDST-------GFSP-NPNSLELYI  145 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~li  145 (427)
                      ....+...+++..|+..|+.+.....-.+.  ..++..+...+...|++++|...+++.       +..| ...++..+.
T Consensus        15 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la   94 (406)
T 3sf4_A           15 EGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG   94 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHHH
Confidence            345667789999999999998765211111  357888899999999999999998752       2122 245788899


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHHHHHHHHHHcCC--------------------hhHHHHHHHHHH
Q 045814          146 QCLCESGLIEEAFCAFSKLKEMGVF-GS----IKTWNSALLGCIKIDR--------------------TDLVWKLYHDLI  200 (427)
Q Consensus       146 ~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~  200 (427)
                      ..|...|++++|...+++..+.... ++    ..++..+...+...|+                    +++|...+++..
T Consensus        95 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al  174 (406)
T 3sf4_A           95 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENL  174 (406)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHH
Confidence            9999999999999999988754211 11    3467777777777777                    555555544332


Q ss_pred             hcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCC----HhhHHH
Q 045814          201 ESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APD----NFTYEE  274 (427)
Q Consensus       201 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~  274 (427)
                                         +++..   .+..+ ...++..+...+...|++++|...+++..+... .++    ..++..
T Consensus       175 -------------------~~~~~---~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  232 (406)
T 3sf4_A          175 -------------------SLVTA---LGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSN  232 (406)
T ss_dssp             -------------------HHHHH---TTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             -------------------HHHHh---ccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence                               22211   11111 234678888889999999999999988765421 111    237888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CC-CHHHHHH
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL----LP-NEYTYNS  344 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p-~~~~~~~  344 (427)
                      +...|...|++++|...+++..+.... ++    ..++..+...|...|++++|...+++..+...    .+ ...++..
T Consensus       233 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~  312 (406)
T 3sf4_A          233 LGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWS  312 (406)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHH
Confidence            889999999999999999987643111 11    45778888999999999999999998875411    11 1457778


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCH
Q 045814          345 MIHGYCRIDNLEEAKRLHKEMLDK----GYG-ETTVTYNTLIAGLCLHGRT  390 (427)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~  390 (427)
                      +...|...|++++|.+.+++..+.    +.. ....++..+...+...|+.
T Consensus       313 la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~  363 (406)
T 3sf4_A          313 LGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS  363 (406)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence            888999999999999999987643    211 1245677777788777765

>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1

Probab=99.52  E-value=6.4e-13  Score=116.35  Aligned_cols=245  Identities=8%  Similarity=-0.001  Sum_probs=170.2

Q ss_pred             cCChHHHHHHHHHHhhcCCCCC--CHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCChhHHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSP--DLVSCNVLFDSLVEARAFKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLIEEAF  158 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~~~A~  158 (427)
                      .++++.|+..|+.+.......+  +..++..+...+...|++++|...|++. ...| +..+|..+...|...|++++|.
T Consensus        18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~   97 (275)
T 1xnf_A           18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY   97 (275)
T ss_dssp             CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred             cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence            4678899999999876532222  5678899999999999999999999872 3333 5789999999999999999999


Q ss_pred             HHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHH
Q 045814          159 CAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFN  238 (427)
Q Consensus       159 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~  238 (427)
                      +.|++..+.... +..++..+...+...|++++|...|+.+.+                          ..  |+.....
T Consensus        98 ~~~~~al~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~a~~--------------------------~~--~~~~~~~  148 (275)
T 1xnf_A           98 EAFDSVLELDPT-YNYAHLNRGIALYYGGRDKLAQDDLLAFYQ--------------------------DD--PNDPFRS  148 (275)
T ss_dssp             HHHHHHHHHCTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH--------------------------HC--TTCHHHH
T ss_pred             HHHHHHHhcCcc-ccHHHHHHHHHHHHhccHHHHHHHHHHHHH--------------------------hC--CCChHHH
Confidence            999999986443 567777777777777766666666655543                          21  2323333


Q ss_pred             HHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC---ChhhHHHHHHHHH
Q 045814          239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP---DTVMYTTVIHGLC  315 (427)
Q Consensus       239 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~li~~~~  315 (427)
                      ..+..+...|++++|...+.+..... +++...+ .++..+...++.++|...+.+..+.....   +..++..+...|.
T Consensus       149 ~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~  226 (275)
T 1xnf_A          149 LWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYL  226 (275)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHH
Confidence            34445566688888888887766653 2233333 46666777778888888888776542211   1467778888888


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHH
Q 045814          316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLH  362 (427)
Q Consensus       316 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  362 (427)
                      +.|++++|...++++....  |+.  +.....++...|++++|.+.+
T Consensus       227 ~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~  269 (275)
T 1xnf_A          227 SLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL  269 (275)
T ss_dssp             HTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred             HcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence            8888888888888888753  422  223344566777777776655

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.50  E-value=9.6e-13  Score=118.44  Aligned_cols=274  Identities=11%  Similarity=0.014  Sum_probs=181.4

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHhc-CCCCC-----HHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhhH
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDST-GFSPN-----PNSLELYIQCLCESGLIEEAFCAFSKLKEM----GVFG-SIKTW  176 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~-----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~  176 (427)
                      .+......+...|++++|...+++. ...|+     ...+..+...+...|++++|.+.+++..+.    +..| ...++
T Consensus         7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~   86 (338)
T 3ro2_A            7 ELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKAS   86 (338)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred             HHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHH
Confidence            3444556666777777777777652 22232     345666777777777777777777765432    1111 23445


Q ss_pred             HHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCC------
Q 045814          177 NSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKN------  249 (427)
Q Consensus       177 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~------  249 (427)
                      ..+...+...|++++|...+++..+.                   ..   ..+.. ....++..+...+...|+      
T Consensus        87 ~~l~~~~~~~g~~~~A~~~~~~al~~-------------------~~---~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~  144 (338)
T 3ro2_A           87 GNLGNTLKVLGNFDEAIVCCQRHLDI-------------------SR---ELNDKVGEARALYNLGNVYHAKGKSFGCPG  144 (338)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHH-------------------HH---HTTCHHHHHHHHHHHHHHHHHHHHTSSSSS
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHH-------------------HH---HhcCchHHHHHHHHHHHHHHHcCcccccch
Confidence            55555555555555555555443321                   00   11100 113467777888888888      


Q ss_pred             --------------hhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C----Chh
Q 045814          250 --------------FGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-P----DTV  305 (427)
Q Consensus       250 --------------~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p----~~~  305 (427)
                                    +++|.+.+++....    +..+ ...++..+...+...|++++|...+++..+.... +    ...
T Consensus       145 ~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~  224 (338)
T 3ro2_A          145 PQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERR  224 (338)
T ss_dssp             CC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             hhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHH
Confidence                          88888888776542    1111 2346778888899999999999999987643111 1    133


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CC-CCChh
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PN----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GY-GETTV  375 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~-~p~~~  375 (427)
                      ++..+...+...|++++|...+++....... .+    ..++..+...|...|++++|...+++..+.    +. .....
T Consensus       225 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~  304 (338)
T 3ro2_A          225 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR  304 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHH
Confidence            7788888999999999999999988754111 11    456778888999999999999999988653    11 11145


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ++..+...|...|++++|.+.+++..+.
T Consensus       305 ~~~~la~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          305 ACWSLGNAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence            7788899999999999999999998874

>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}

Probab=99.48  E-value=2.1e-12  Score=120.28  Aligned_cols=268  Identities=12%  Similarity=0.015  Sum_probs=194.0

Q ss_pred             HHHHhcCChHHHHHHHHHHhhcCCCCCCH----hhHHHHHHHHHHcCChHHHHHHHHhc-------CCCC-CHHhHHHHH
Q 045814           78 EFLKQQNNVLLSIRFFQWLHSHYGFSPDL----VSCNVLFDSLVEARAFKVAMDFLDST-------GFSP-NPNSLELYI  145 (427)
Q Consensus        78 ~~l~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~li  145 (427)
                      ..+...+++..|+..|+.+....  +.+.    ..+..+...+...|++++|...+++.       +..| ...++..+.
T Consensus        56 ~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~  133 (411)
T 4a1s_A           56 ERLCNAGDCRAGVAFFQAAIQAG--TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLG  133 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHhCcHHHHHHHHHHHHHhc--ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHH
Confidence            34557899999999999987652  2233    57888899999999999999998752       2122 345788899


Q ss_pred             HHHHhcCChhHHHHHHHHHHhcC-----CCcCHhhHHHHHHHHHHcCC-----------------hhHHHHHHHHHHhcc
Q 045814          146 QCLCESGLIEEAFCAFSKLKEMG-----VFGSIKTWNSALLGCIKIDR-----------------TDLVWKLYHDLIESG  203 (427)
Q Consensus       146 ~~~~~~~~~~~A~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~~~-----------------~~~a~~~~~~~~~~~  203 (427)
                      ..|...|++++|.+.|++..+..     ......++..+...+...|+                 +++|...+++.    
T Consensus       134 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~a----  209 (411)
T 4a1s_A          134 NTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQEN----  209 (411)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHH----
T ss_pred             HHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHH----
Confidence            99999999999999999887541     11234567777778888888                 55555544433    


Q ss_pred             hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC----HhhHHHHHHH
Q 045814          204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PD----NFTYEEVING  278 (427)
Q Consensus       204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~  278 (427)
                                     +++.....  .......++..+...+...|++++|.+.+++..+.... .+    ..++..+...
T Consensus       210 ---------------l~~~~~~~--~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  272 (411)
T 4a1s_A          210 ---------------LKLMRDLG--DRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNS  272 (411)
T ss_dssp             ---------------HHHHHHHT--CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---------------HHHHHHcC--CHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence                           22222221  01113347788888899999999999999887664211 11    2377888899


Q ss_pred             HHhcCChHHHHHHHHHHHhCCCC-----CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHHHH
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYV-----PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LL-PNEYTYNSMIHG  348 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~-----p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~li~~  348 (427)
                      |...|++++|...|++..+....     ....++..+...|...|++++|...+++.....    .. ....++..+...
T Consensus       273 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~  352 (411)
T 4a1s_A          273 HIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNA  352 (411)
T ss_dssp             HHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHH
Confidence            99999999999999987653211     124578888899999999999999999887641    11 113477788899


Q ss_pred             HhhcCCHHHHHHHHHHHHHC
Q 045814          349 YCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       349 ~~~~g~~~~a~~~~~~m~~~  368 (427)
                      |...|++++|.+.+++..+.
T Consensus       353 ~~~~g~~~~A~~~~~~al~~  372 (411)
T 4a1s_A          353 HSAIGGHERALKYAEQHLQL  372 (411)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhccHHHHHHHHHHHHHH
Confidence            99999999999999998764

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.48  E-value=8.6e-11  Score=104.89  Aligned_cols=224  Identities=9%  Similarity=0.029  Sum_probs=170.2

Q ss_pred             hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCCh-------hHHHHHHHHHHH
Q 045814          155 EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKV-------SEGYELLRQVLE  227 (427)
Q Consensus       155 ~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~-------~~a~~~~~~~~~  227 (427)
                      ++|..+|++....... +...|..++..+...++                   .+...|++       ++|..+|++...
T Consensus        33 ~~a~~~~~~al~~~p~-~~~~w~~~~~~~~~~~~-------------------~l~~~g~~~~~~~~~~~A~~~~~rAl~   92 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGH-HPDIWYEAAQYLEQSSK-------------------LLAEKGDMNNAKLFSDEAANIYERAIS   92 (308)
T ss_dssp             HHHHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHH-------------------HHHHTSCCHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHhch-------------------hhhhccchhhcccchHHHHHHHHHHHH
Confidence            6788888888876433 67778777766654321                   01233443       778888888777


Q ss_pred             C-CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-Hh-hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh
Q 045814          228 D-GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD-NF-TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT  304 (427)
Q Consensus       228 ~-~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~-~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~  304 (427)
                      . ... +...|..++..+.+.|++++|.++|++..+.  .|+ .. +|..+...+.+.|++++|..+|++..+.... +.
T Consensus        93 ~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~-~~  168 (308)
T 2ond_A           93 TLLKK-NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RH  168 (308)
T ss_dssp             TTTTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CT
T ss_pred             HhCcc-cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCC-CH
Confidence            3 332 5668999999999999999999999999885  343 33 7889999999999999999999999886432 44


Q ss_pred             hhHHHHHHHH-HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHH
Q 045814          305 VMYTTVIHGL-CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-YGE--TTVTYNTL  380 (427)
Q Consensus       305 ~~~~~li~~~-~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~~~~~~l  380 (427)
                      ..|....... ...|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..+.. +.|  ....|..+
T Consensus       169 ~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~  247 (308)
T 2ond_A          169 HVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARF  247 (308)
T ss_dssp             HHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHH
Confidence            4454333332 23699999999999998763 2357788888999999999999999999999863 454  46788899


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHHC
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +..+.+.|+.++|..+++++.+.
T Consensus       248 ~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          248 LAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHH
Confidence            99999999999999999998875

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.47  E-value=9.5e-13  Score=117.38  Aligned_cols=245  Identities=13%  Similarity=0.027  Sum_probs=163.1

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhc-------CCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEM-------GVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFC  210 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-------g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~  210 (427)
                      ..++..+...+...|++++|..+|+++.+.       .......++..+...+...|++++|...+++.+.         
T Consensus        27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~---------   97 (311)
T 3nf1_A           27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALA---------   97 (311)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH---------
Confidence            456778888888888888888888888763       2233456777788888888888888887665542         


Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcC
Q 045814          211 NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR------NRAP-DNFTYEEVINGLCKSR  283 (427)
Q Consensus       211 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~  283 (427)
                                +.+............++..+...+...|++++|.+.+++..+.      +..| ....+..+...|...|
T Consensus        98 ----------~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~  167 (311)
T 3nf1_A           98 ----------IREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQG  167 (311)
T ss_dssp             ----------HHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTT
T ss_pred             ----------HHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcC
Confidence                      2222221222224567888888999999999999999888764      2222 3457888888999999


Q ss_pred             ChHHHHHHHHHHHhC------CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCHH-------HH
Q 045814          284 KRLEAYRVFNDLKER------GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-------GLLPNEY-------TY  342 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~------~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~~-------~~  342 (427)
                      ++++|...|+++.+.      +..| ...++..+...|...|++++|...++++.+.       ...+...       .+
T Consensus       168 ~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~  247 (311)
T 3nf1_A          168 KYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEER  247 (311)
T ss_dssp             CHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHH
Confidence            999999999988664      2122 3457888889999999999999999998763       1111111       12


Q ss_pred             HHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          343 NSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       343 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..+...+...+.+.++...++...... +.+..++..+...|...|++++|.++|++..+
T Consensus       248 ~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  306 (311)
T 3nf1_A          248 EECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR  306 (311)
T ss_dssp             HHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            222333444455666666666665432 23567888999999999999999999998875

>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}

Probab=99.46  E-value=3.2e-12  Score=115.03  Aligned_cols=271  Identities=11%  Similarity=0.032  Sum_probs=192.9

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCC--HhhHHHHHHHHHHcCChHHHHHHHHhc-------CCCC-CHHhHHHHHH
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPD--LVSCNVLFDSLVEARAFKVAMDFLDST-------GFSP-NPNSLELYIQ  146 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~~-------~~~~-~~~~~~~li~  146 (427)
                      ...+...+++..|+..|+.+.....-.+.  ...+..+...+...|++++|.+.+++.       +..| ...++..+..
T Consensus        12 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~   91 (338)
T 3ro2_A           12 GERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLGN   91 (338)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHHH
Confidence            34566789999999999998765211111  467888999999999999999998752       2122 2557888999


Q ss_pred             HHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHHHHHHHHHHcCC--------------------hhHHHHHHHHHHh
Q 045814          147 CLCESGLIEEAFCAFSKLKEMGVF-GS----IKTWNSALLGCIKIDR--------------------TDLVWKLYHDLIE  201 (427)
Q Consensus       147 ~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~~~--------------------~~~a~~~~~~~~~  201 (427)
                      .+...|++++|.+.+++..+.... ++    ..++..+...+...|+                    +++|...+++.. 
T Consensus        92 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~-  170 (338)
T 3ro2_A           92 TLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL-  170 (338)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH-
T ss_pred             HHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH-
Confidence            999999999999999987653211 11    3467777777877777                    555555544332 


Q ss_pred             cchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-----CCCHhhHHHHH
Q 045814          202 SGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-----APDNFTYEEVI  276 (427)
Q Consensus       202 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll  276 (427)
                                        .+.....  .......++..+...+...|++++|...+++..+...     .....++..+.
T Consensus       171 ------------------~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~  230 (338)
T 3ro2_A          171 ------------------SLVTALG--DRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLG  230 (338)
T ss_dssp             ------------------HHHHHHT--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             ------------------HHHHhcC--CHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHH
Confidence                              2222211  0011234677788888999999999999988765321     11123778888


Q ss_pred             HHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CC-CCHHHHHHHH
Q 045814          277 NGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LL-PNEYTYNSMI  346 (427)
Q Consensus       277 ~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~-p~~~~~~~li  346 (427)
                      ..+...|++++|...+++..+.... .+    ..++..+...+...|++++|...+++.....    .. ....++..+.
T Consensus       231 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la  310 (338)
T 3ro2_A          231 NAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLG  310 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHH
Confidence            8999999999999999987643111 11    4577888889999999999999999886541    11 1134677888


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHC
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ..|...|++++|...+++..+.
T Consensus       311 ~~~~~~g~~~~A~~~~~~a~~~  332 (338)
T 3ro2_A          311 NAYTALGNHDQAMHFAEKHLEI  332 (338)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHC
T ss_pred             HHHHHcCChHHHHHHHHHHHHH
Confidence            8999999999999999998865

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.46  E-value=1.9e-11  Score=100.12  Aligned_cols=171  Identities=11%  Similarity=0.013  Sum_probs=145.7

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      +...|..+...|...|++++|++.|++..+..+. +..++..+...|.+.|++++|...+......... +...+..+..
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~   81 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLDTT-SAEAYYILGS   81 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCch-hHHHHHHHHH
Confidence            5678999999999999999999999999887533 6778899999999999999999999998877544 5667788888


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814          313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE  392 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  392 (427)
                      .+...++++.|...+.+...... -+...+..+...|.+.|++++|.+.|++..+... .+...|..+..+|.+.|++++
T Consensus        82 ~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~lg~~~~~~g~~~~  159 (184)
T 3vtx_A           82 ANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKP-GFIRAYQSIGLAYEGKGLRDE  159 (184)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcc-hhhhHHHHHHHHHHHCCCHHH
Confidence            89999999999999999888643 3577888889999999999999999999988642 367889999999999999999


Q ss_pred             HHHHHHHHHHCCCCCCH
Q 045814          393 AYHLFEEMAQKGIFRDV  409 (427)
Q Consensus       393 A~~~~~~m~~~g~~p~~  409 (427)
                      |.+.|++..+.  .|+.
T Consensus       160 A~~~~~~al~~--~p~~  174 (184)
T 3vtx_A          160 AVKYFKKALEK--EEKK  174 (184)
T ss_dssp             HHHHHHHHHHT--THHH
T ss_pred             HHHHHHHHHhC--CccC
Confidence            99999999874  4543

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.44  E-value=3.7e-11  Score=110.82  Aligned_cols=234  Identities=8%  Similarity=-0.055  Sum_probs=160.0

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814          144 YIQCLCESGLIEEAFCAFSKLKEM----GVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG  218 (427)
Q Consensus       144 li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a  218 (427)
                      ....+...|++++|...|++..+.    +-.+ ...++..+...+...|++++|...+++..+                 
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~-----------------  171 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYE-----------------  171 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----------------
Confidence            344556677777777777776543    1111 234555555666666666666555544332                 


Q ss_pred             HHHHHHHHHCCC--CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC----CC-CHhhHHHHHHHHHhcCChHHHHHH
Q 045814          219 YELLRQVLEDGL--VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR----AP-DNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       219 ~~~~~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~----~~-~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                        ++..   .+.  .....+++.+...|...|++++|.+.+++..+...    .+ ...++..+...|...|++++|...
T Consensus       172 --~~~~---~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  246 (383)
T 3ulq_A          172 --IYKE---HEAYNIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPY  246 (383)
T ss_dssp             --HHHT---CSTTHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             --HHHh---CccchHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence              1111   110  01235788888999999999999999988775421    11 124788899999999999999999


Q ss_pred             HHHHHhC----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHhhcCC---HHHHH
Q 045814          292 FNDLKER----GY-VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNEYTYNSMIHGYCRIDN---LEEAK  359 (427)
Q Consensus       292 ~~~m~~~----~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~li~~~~~~g~---~~~a~  359 (427)
                      |++..+.    +. .....++..+...|.+.|++++|...+++..+.    +.......+..+...|...|+   +++|.
T Consensus       247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al  326 (383)
T 3ulq_A          247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF  326 (383)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            9998762    22 224567888999999999999999999988754    111122345677888889998   77777


Q ss_pred             HHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          360 RLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       360 ~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .++++.   +..| ....+..+...|...|++++|.+.+++..+
T Consensus       327 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          327 DFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777665   2222 345677888999999999999999998865

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.41  E-value=1.3e-10  Score=109.62  Aligned_cols=307  Identities=11%  Similarity=0.029  Sum_probs=131.4

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCCh---HHHHHHHHhcCCCCCHHhHHHHHHHHHhcC
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAF---KVAMDFLDSTGFSPNPNSLELYIQCLCESG  152 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~li~~~~~~~  152 (427)
                      +.......+++..|++.|..+... |   +...+..+...+...|+.   ++|..+|++.--. ++..+..|...+...+
T Consensus         9 la~~~~~~g~~~~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-~~~A~~~Lg~~~~~~~   83 (452)
T 3e4b_A            9 LANEALKRGDTVTAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-SPRAQARLGRLLAAKP   83 (452)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH-T---CCTGGGTCC-----------------------------CHHHHHHHHHTC-
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-CHHHHHHHHHHHHhCC
Confidence            344455667778888888777543 2   334444555555566666   7788887774322 6666666666555544


Q ss_pred             -----ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChh---HHHHHHHHHHhcc------hhHHHHHhcCChhHH
Q 045814          153 -----LIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTD---LVWKLYHDLIESG------YLIQAFCNDGKVSEG  218 (427)
Q Consensus       153 -----~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~---~a~~~~~~~~~~~------~l~~~~~~~g~~~~a  218 (427)
                           ++++|...|++..+.|..   ..+..|...|...+..+   .+.+.+......+      .+...|...+.++++
T Consensus        84 ~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~  160 (452)
T 3e4b_A           84 GATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQH  160 (452)
T ss_dssp             -CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGG
T ss_pred             CCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccC
Confidence                 667788888877775533   25555666665544322   2333333333222      133344444433333


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccC---ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc----CChHHHHHH
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFCEKK---NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS----RKRLEAYRV  291 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----~~~~~a~~~  291 (427)
                      ......+...-...+...+..|...|...|   +.++|++.|++..+.|. ++...+..+...|...    +++++|...
T Consensus       161 ~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~~~d~~~A~~~  239 (452)
T 3e4b_A          161 LDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLGTPDEKTAQAL  239 (452)
T ss_dssp             HHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGSSCCHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCCCCCHHHHHHH
Confidence            332222221111112224444555555555   55555555555555442 2233333333444332    455555555


Q ss_pred             HHHHHhCCCCCChhhHHHHHHH-H--HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-----CHHHHHHHHH
Q 045814          292 FNDLKERGYVPDTVMYTTVIHG-L--CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-----NLEEAKRLHK  363 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~-~--~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~  363 (427)
                      |++.. .|   +...+..+... +  ...++.++|...|++..+.|   +...+..+...|. .|     ++++|.+.|+
T Consensus       240 ~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~  311 (452)
T 3e4b_A          240 LEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFE  311 (452)
T ss_dssp             HHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHH
T ss_pred             HHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHH
Confidence            55544 21   23333333333 2  23455555555555555444   3334444444443 23     5555555555


Q ss_pred             HHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHC
Q 045814          364 EMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       364 ~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~  403 (427)
                      +.. .|   +...+..|...|..    ..+.++|.+.|++..+.
T Consensus       312 ~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          312 KAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             TTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             HHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            544 21   34444444444433    22455555555554443

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.40  E-value=4.2e-11  Score=113.56  Aligned_cols=191  Identities=9%  Similarity=-0.058  Sum_probs=131.0

Q ss_pred             hHHHHHhcCCh-hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhc-
Q 045814          205 LIQAFCNDGKV-SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKS-  282 (427)
Q Consensus       205 l~~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~-  282 (427)
                      +...+...|++ ++|++.|++..+.... +...|..+..+|...|++++|.+.|++..+..  |+...+..+...|... 
T Consensus       108 lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~lg~~~~~~~  184 (474)
T 4abn_A          108 KGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC--KNKVSLQNLSMVLRQLQ  184 (474)
T ss_dssp             HHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC--CCHHHHHHHHHHHTTCC
T ss_pred             HHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CCHHHHHHHHHHHHHhc
Confidence            55566677777 7777777777765433 56677777777777777777777777777663  4456677777777777 


Q ss_pred             --------CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHH
Q 045814          283 --------RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM--------GWLGDARKMWFEMIHKGLL--PNEYTYNS  344 (427)
Q Consensus       283 --------~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------g~~~~a~~~~~~m~~~~~~--p~~~~~~~  344 (427)
                              |++++|...|++..+.... +...|..+..+|...        |++++|...|++..+....  -+...|..
T Consensus       185 ~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~  263 (474)
T 4abn_A          185 TDSGDEHSRHVMDSVRQAKLAVQMDVL-DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLN  263 (474)
T ss_dssp             CSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHH
T ss_pred             cCChhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHH
Confidence                    7777777777777665433 566777777777776        7777777777777765310  25666777


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 045814          345 MIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEM  400 (427)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m  400 (427)
                      +..+|...|++++|.+.|++..+... -+...+..+...+...|++++|.+.+.++
T Consensus       264 lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          264 RATLHKYEESYGEALEGFSQAAALDP-AWPEPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            77777777777777777777766532 24556677777777777777777655444

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.39  E-value=2.9e-10  Score=104.30  Aligned_cols=271  Identities=8%  Similarity=-0.030  Sum_probs=144.6

Q ss_pred             HHHHHHHHHcCChHHHHHHHHh-cCCCC--CH----HhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-cC----HhhHH
Q 045814          110 NVLFDSLVEARAFKVAMDFLDS-TGFSP--NP----NSLELYIQCLCESGLIEEAFCAFSKLKEMGVF-GS----IKTWN  177 (427)
Q Consensus       110 ~~ll~~~~~~~~~~~a~~~~~~-~~~~~--~~----~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p~----~~~~~  177 (427)
                      ......+...|++++|...+++ ....|  +.    .+++.+...+...|++++|.+.+++....... .+    ..++.
T Consensus        18 ~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~   97 (373)
T 1hz4_A           18 ALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLI   97 (373)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            3344455677888888888775 11112  11    24566667777788888888888776643111 11    12244


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC--C-CHHHHHHHHHHHHccCChhHHH
Q 045814          178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV--P-ENTAFNKLISRFCEKKNFGRVS  254 (427)
Q Consensus       178 ~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~  254 (427)
                      .+...+...|++++|...+++....                      ....+..  | ....+..+...+...|++++|.
T Consensus        98 ~la~~~~~~G~~~~A~~~~~~al~~----------------------~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~  155 (373)
T 1hz4_A           98 QQSEILFAQGFLQTAWETQEKAFQL----------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAE  155 (373)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHH----------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHH----------------------HHHhccccCcHHHHHHHHHHHHHHHhcCHHHHH
Confidence            4555556666666666655544321                      0011111  1 2234455566666677777777


Q ss_pred             HHHHHHhhCCCCC----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCCh-hhHH-----HHHHHHHccCCHHHHH
Q 045814          255 ELLHTMVARNRAP----DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDT-VMYT-----TVIHGLCKMGWLGDAR  324 (427)
Q Consensus       255 ~~~~~m~~~~~~~----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~-----~li~~~~~~g~~~~a~  324 (427)
                      ..+++........    ...++..+...+...|++++|...+++.......++. ..+.     ..+..+...|++++|.
T Consensus       156 ~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~  235 (373)
T 1hz4_A          156 ASARSGIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAA  235 (373)
T ss_dssp             HHHHHHHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHhhccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHH
Confidence            7776655432211    1234555666666777777777777666433111111 1111     1223355667777777


Q ss_pred             HHHHHHHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCCh-hhHHHHHHHHHhcCCHHHHHHH
Q 045814          325 KMWFEMIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGETT-VTYNTLIAGLCLHGRTDEAYHL  396 (427)
Q Consensus       325 ~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~A~~~  396 (427)
                      ..+++.......+.   ...+..+...+...|++++|...++.....    |..++. ..+..+..++...|+.++|...
T Consensus       236 ~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~  315 (373)
T 1hz4_A          236 NWLRHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRV  315 (373)
T ss_dssp             HHHHHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred             HHHHhCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHH
Confidence            77766654321111   123455556666777777777776665432    211122 2445555666677777777776


Q ss_pred             HHHHHH
Q 045814          397 FEEMAQ  402 (427)
Q Consensus       397 ~~~m~~  402 (427)
                      +++...
T Consensus       316 l~~al~  321 (373)
T 1hz4_A          316 LLDALK  321 (373)
T ss_dssp             HHHHHH
T ss_pred             HHHHHH
Confidence            666543

>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A

Probab=99.38  E-value=1.4e-10  Score=94.93  Aligned_cols=167  Identities=11%  Similarity=-0.037  Sum_probs=96.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChh
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVS  216 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~  216 (427)
                      ++..|..+...|.+.|++++|++.|++..+.... +..++..+..++.+.|++++|...++..                 
T Consensus         4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~-----------------   65 (184)
T 3vtx_A            4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKF-----------------   65 (184)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHH-----------------
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHH-----------------
Confidence            4556667777777777777777777777665433 4555555555555544444444443333                 


Q ss_pred             HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          217 EGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       217 ~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                               ...... +...+..+...+...++++.+...+.+...... .+...+..+...|.+.|++++|++.|++..
T Consensus        66 ---------~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~-~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l  134 (184)
T 3vtx_A           66 ---------VVLDTT-SAEAYYILGSANFMIDEKQAAIDALQRAIALNT-VYADAYYKLGLVYDSMGEHDKAIEAYEKTI  134 (184)
T ss_dssp             ---------HHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             ---------HhcCch-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHhCCchhHHHHHHHHH
Confidence                     222222 344555555556666666666666666555432 244555666666666666666666666665


Q ss_pred             hCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          297 ERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       297 ~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      +.... +..+|..+..+|.+.|++++|...|++..+.
T Consensus       135 ~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  170 (184)
T 3vtx_A          135 SIKPG-FIRAYQSIGLAYEGKGLRDEAVKYFKKALEK  170 (184)
T ss_dssp             HHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             Hhcch-hhhHHHHHHHHHHHCCCHHHHHHHHHHHHhC
Confidence            54332 4455666666666666666666666666553

>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7

Probab=99.37  E-value=4.9e-10  Score=99.95  Aligned_cols=215  Identities=13%  Similarity=0.074  Sum_probs=146.0

Q ss_pred             HHHHHHHHhc-CC-CCCHHhHHHHHHHHH-------hcCCh-------hHHHHHHHHHHh-cCCCcCHhhHHHHHHHHHH
Q 045814          123 KVAMDFLDST-GF-SPNPNSLELYIQCLC-------ESGLI-------EEAFCAFSKLKE-MGVFGSIKTWNSALLGCIK  185 (427)
Q Consensus       123 ~~a~~~~~~~-~~-~~~~~~~~~li~~~~-------~~~~~-------~~A~~~~~~m~~-~g~~p~~~~~~~ll~~~~~  185 (427)
                      ++|...|++. .. +.++..|..++..+.       +.|++       ++|..+|++..+ .... +...|..++..+.+
T Consensus        33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~-~~~~~~~~~~~~~~  111 (308)
T 2ond_A           33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKK-NMLLYFAYADYEES  111 (308)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTT-CHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHHh
Confidence            4555566552 21 335667777766665       34775       788888888887 3322 55577776666666


Q ss_pred             cCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHH-HHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814          186 IDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENT-AFNKLISRFCEKKNFGRVSELLHTMVAR  263 (427)
Q Consensus       186 ~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~  263 (427)
                      .|++++|..+|++++                          ..  .| +.. .|..+...+.+.|++++|..+|++..+.
T Consensus       112 ~~~~~~A~~~~~~al--------------------------~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~  163 (308)
T 2ond_A          112 RMKYEKVHSIYNRLL--------------------------AI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED  163 (308)
T ss_dssp             TTCHHHHHHHHHHHH--------------------------TS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS
T ss_pred             cCCHHHHHHHHHHHH--------------------------hc--cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence            665555555555443                          32  22 232 6788888888888888888888888876


Q ss_pred             CCCCCHhhHHHHHHHHH-hcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCC--CH
Q 045814          264 NRAPDNFTYEEVINGLC-KSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLP--NE  339 (427)
Q Consensus       264 ~~~~~~~~~~~ll~~~~-~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p--~~  339 (427)
                      .. .+...|........ ..|++++|..+|++..+.... +...|..++..+.+.|++++|..+|++..... ..|  ..
T Consensus       164 ~p-~~~~~~~~~a~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~  241 (308)
T 2ond_A          164 AR-TRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGD-IPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSG  241 (308)
T ss_dssp             TT-CCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTT-CHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCH
T ss_pred             CC-CCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHH
Confidence            43 23344443333322 368889999999888765332 56788888888888899999999999988863 344  35


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ..|..++..+.+.|+.+.|..+++++.+.
T Consensus       242 ~l~~~~~~~~~~~g~~~~a~~~~~~a~~~  270 (308)
T 2ond_A          242 EIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             HHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            67788888888889999999988888765

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.36  E-value=4e-10  Score=103.70  Aligned_cols=165  Identities=10%  Similarity=0.043  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHh-----CCCCCC
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKE-----RGYVPD  303 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~-----~~~~p~  303 (427)
                      ..+++.+...|...|++++|.+.+++..+.    +..+ ...++..+...|...|++++|...|++..+     .... .
T Consensus       182 ~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~-~  260 (378)
T 3q15_A          182 IQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDL-L  260 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGG-H
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChh-H
Confidence            457888889999999999999999887653    1111 235778888999999999999999999876     4332 3


Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC----CCCHHHHHHHHHHHhhcCC---HHHHHHHHHHHHHCCCCC-Chh
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL----LPNEYTYNSMIHGYCRIDN---LEEAKRLHKEMLDKGYGE-TTV  375 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p-~~~  375 (427)
                      ..++..+...+.+.|++++|...+++..+...    ......+..+...|...|+   +.+|..+++.   .+..| ...
T Consensus       261 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~  337 (378)
T 3q15_A          261 PKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEA  337 (378)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHH
T ss_pred             HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHH
Confidence            66788889999999999999999999887521    2223456666667778888   7777777766   22222 245


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .+..+...|...|++++|.+.|++..+
T Consensus       338 ~~~~la~~y~~~g~~~~A~~~~~~al~  364 (378)
T 3q15_A          338 CARSAAAVFESSCHFEQAAAFYRKVLK  364 (378)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            667888999999999999999998765

>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}

Probab=99.35  E-value=4.8e-11  Score=113.20  Aligned_cols=213  Identities=10%  Similarity=-0.002  Sum_probs=164.2

Q ss_pred             hHHHHHHHHhc-CCCC-CHHhHHHHHHHHHhcCCh-hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHH
Q 045814          122 FKVAMDFLDST-GFSP-NPNSLELYIQCLCESGLI-EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHD  198 (427)
Q Consensus       122 ~~~a~~~~~~~-~~~~-~~~~~~~li~~~~~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~  198 (427)
                      ++.+...+++. ...| +...+..+...+...|++ ++|++.|++..+.... +...|..+..+|...|+          
T Consensus        84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~----------  152 (474)
T 4abn_A           84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPE-LVEAWNQLGEVYWKKGD----------  152 (474)
T ss_dssp             HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTC----------
T ss_pred             HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHcCC----------
Confidence            55666666552 2233 567788888888888888 8888888888776433 46666666665555555          


Q ss_pred             HHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---------CChhHHHHHHHHHhhCCCCCCH
Q 045814          199 LIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK---------KNFGRVSELLHTMVARNRAPDN  269 (427)
Q Consensus       199 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~~~~~~~  269 (427)
                                      +++|.+.|++....  .|+...+..+...+...         |++++|.+.+++..+... .+.
T Consensus       153 ----------------~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~  213 (474)
T 4abn_A          153 ----------------VTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDV-LDG  213 (474)
T ss_dssp             ----------------HHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCT-TCH
T ss_pred             ----------------HHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCC-CCH
Confidence                            45555555555554  36678899999999999         999999999999998753 367


Q ss_pred             hhHHHHHHHHHhc--------CChHHHHHHHHHHHhCCCC--CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH
Q 045814          270 FTYEEVINGLCKS--------RKRLEAYRVFNDLKERGYV--PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE  339 (427)
Q Consensus       270 ~~~~~ll~~~~~~--------~~~~~a~~~~~~m~~~~~~--p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~  339 (427)
                      ..|..+..+|...        |++++|...|++..+....  -+...|..+..+|...|++++|...|++..+... -+.
T Consensus       214 ~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~  292 (474)
T 4abn_A          214 RSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALDP-AWP  292 (474)
T ss_dssp             HHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCH
T ss_pred             HHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCH
Confidence            8899999999998        9999999999999886431  2778999999999999999999999999998742 256


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          340 YTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ..+..+...+...|++++|.+.+..+
T Consensus       293 ~a~~~l~~~~~~lg~~~eAi~~~~~~  318 (474)
T 4abn_A          293 EPQQREQQLLEFLSRLTSLLESKGKT  318 (474)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhccc
Confidence            67888888999999999888766544

>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}

Probab=99.34  E-value=5.9e-11  Score=109.45  Aligned_cols=231  Identities=7%  Similarity=-0.087  Sum_probs=165.2

Q ss_pred             HHHHHHHcCChHHHHHHHHhc-CC---CCC----HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC------cCHhhHH
Q 045814          112 LFDSLVEARAFKVAMDFLDST-GF---SPN----PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF------GSIKTWN  177 (427)
Q Consensus       112 ll~~~~~~~~~~~a~~~~~~~-~~---~~~----~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~------p~~~~~~  177 (427)
                      ....+...|++++|...+++. ..   .++    ..++..+...|...|++++|...+.+..+.-..      ....+++
T Consensus       109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  188 (383)
T 3ulq_A          109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS  188 (383)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred             HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence            455667899999999999873 21   233    457889999999999999999999988754111      1234667


Q ss_pred             HHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChhHHHHH
Q 045814          178 SALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLV-PENTAFNKLISRFCEKKNFGRVSEL  256 (427)
Q Consensus       178 ~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~  256 (427)
                      .+...|...|++++|...|++..+                   +...   .+-. ....++..+...|...|++++|.+.
T Consensus       189 ~lg~~~~~~g~~~~A~~~~~~al~-------------------~~~~---~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~  246 (383)
T 3ulq_A          189 LFATNFLDLKQYEDAISHFQKAYS-------------------MAEA---EKQPQLMGRTLYNIGLCKNSQSQYEDAIPY  246 (383)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHH-------------------HHHH---TTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHhcCHHHHHHHHHHHHH-------------------HHHH---cCChHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            777777777777777777665442                   1111   1111 1224678888899999999999999


Q ss_pred             HHHHhhC----CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCCChhhHHHHHHHHHccCC---HHHHH
Q 045814          257 LHTMVAR----NR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERG----YVPDTVMYTTVIHGLCKMGW---LGDAR  324 (427)
Q Consensus       257 ~~~m~~~----~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~a~  324 (427)
                      +++..+.    +. +....++..+...|.+.|++++|...+++..+..    -......+..+...+...|+   .++|.
T Consensus       247 ~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al  326 (383)
T 3ulq_A          247 FKRAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFF  326 (383)
T ss_dssp             HHHHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHH
T ss_pred             HHHHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence            9988762    22 2235678889999999999999999999876531    11122345677788888898   77777


Q ss_pred             HHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          325 KMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       325 ~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      .++++.   +..|+ ...+..+...|...|++++|...+++..+
T Consensus       327 ~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~  367 (383)
T 3ulq_A          327 DFLESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ  367 (383)
T ss_dssp             HHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            777665   32333 34677788899999999999999998765

>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}

Probab=99.34  E-value=1.1e-11  Score=110.46  Aligned_cols=244  Identities=12%  Similarity=0.050  Sum_probs=160.3

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHhc-C---------CCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc------C
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDST-G---------FSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM------G  168 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~---------~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~------g  168 (427)
                      +..++..+...+...|++++|...+++. .         ......++..+...|...|++++|...|++..+.      +
T Consensus        26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~  105 (311)
T 3nf1_A           26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK  105 (311)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence            4567788888899999999999988762 1         1223557888999999999999999999988764      1


Q ss_pred             C-CcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 045814          169 V-FGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK  247 (427)
Q Consensus       169 ~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~  247 (427)
                      - .....++..+...+...|++++|...++++.+                   +.+.............+..+...+...
T Consensus       106 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~-------------------~~~~~~~~~~~~~~~~~~~la~~~~~~  166 (311)
T 3nf1_A          106 DHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALE-------------------IREKVLGKDHPDVAKQLNNLALLCQNQ  166 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH-------------------HHHHHHCTTCHHHHHHHHHHHHHHHTT
T ss_pred             CChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHH-------------------HHHHhcCCCChHHHHHHHHHHHHHHHc
Confidence            1 22356677777788888888888777765543                   222221111122455778888899999


Q ss_pred             CChhHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChh-------h
Q 045814          248 KNFGRVSELLHTMVAR------NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKER-------GYVPDTV-------M  306 (427)
Q Consensus       248 ~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-------~  306 (427)
                      |++++|.+.++++.+.      +..| ...++..+...|...|++++|...++++.+.       ...+...       .
T Consensus       167 ~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~  246 (311)
T 3nf1_A          167 GKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEE  246 (311)
T ss_dssp             TCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHH
T ss_pred             CCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHH
Confidence            9999999999888764      2222 2357888889999999999999999988753       1112222       1


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +..+...+...+.+.++...+....... ..+..++..+..+|.+.|++++|.+++++..+.
T Consensus       247 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l  307 (311)
T 3nf1_A          247 REECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS  307 (311)
T ss_dssp             HHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            2222233334455666666666665542 234567888999999999999999999988753

>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}

Probab=99.34  E-value=4.9e-10  Score=105.54  Aligned_cols=298  Identities=8%  Similarity=-0.041  Sum_probs=197.0

Q ss_pred             ChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcC-----ChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhH---
Q 045814           85 NVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEAR-----AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEE---  156 (427)
Q Consensus        85 ~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~---  156 (427)
                      +...|+..|+.+...     ++..+..+...+...+     ++++|..+|++.-..-+...+..|...|...+..+.   
T Consensus        53 d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~  127 (452)
T 3e4b_A           53 QIKQAEATYRAAADT-----SPRAQARLGRLLAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVN  127 (452)
T ss_dssp             -----------------------CHHHHHHHHHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCC
T ss_pred             CHHHHHHHHHHHHhC-----CHHHHHHHHHHHHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHH
Confidence            338888888887532     6667777777555554     778999999873222234477788888877665444   


Q ss_pred             HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHH----HHHHHHHhcc-----hhHHHHHhcC---ChhHHHHHHHH
Q 045814          157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW----KLYHDLIESG-----YLIQAFCNDG---KVSEGYELLRQ  224 (427)
Q Consensus       157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~----~~~~~~~~~~-----~l~~~~~~~g---~~~~a~~~~~~  224 (427)
                      +.+.+......|   +...+..|...|...+.++.+.    .+++.....+     .+...|...|   +.++|++.|++
T Consensus       128 a~~~~~~a~~~g---~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~  204 (452)
T 3e4b_A          128 AQQQISQWQAAG---YPEAGLAQVLLYRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEA  204 (452)
T ss_dssp             HHHHHHHHHHHT---CTTHHHHHHHHHHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHH
Confidence            445555554443   3556777778888877554444    4444443332     3666777788   89999999999


Q ss_pred             HHHCCCCCCHHHHHHHHHHHHcc----CChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-H--HhcCChHHHHHHHHHHHh
Q 045814          225 VLEDGLVPENTAFNKLISRFCEK----KNFGRVSELLHTMVARNRAPDNFTYEEVING-L--CKSRKRLEAYRVFNDLKE  297 (427)
Q Consensus       225 ~~~~~~~~~~~~~~~li~~~~~~----~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~--~~~~~~~~a~~~~~~m~~  297 (427)
                      ..+.|.. +...+..|...|...    +++++|.+.|++.. .|   +...+..+... |  ...+++++|...|++..+
T Consensus       205 aa~~g~~-~a~~~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~  279 (452)
T 3e4b_A          205 GVSRGTV-TAQRVDSVARVLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRA  279 (452)
T ss_dssp             HHHTTCS-CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHH
T ss_pred             HHHCCCH-HHHHHHHHHHHHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHH
Confidence            9888754 555556677777654    78999999999887 33   44566666665 4  468899999999999988


Q ss_pred             CCCCCChhhHHHHHHHHHccC-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHHHHHHHHHHC
Q 045814          298 RGYVPDTVMYTTVIHGLCKMG-----WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       298 ~~~~p~~~~~~~li~~~~~~g-----~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~  368 (427)
                      .|   +...+..+...|. .|     ++++|...|++.. .|   +...+..+...|..    ..++++|...|+...+.
T Consensus       280 ~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  351 (452)
T 3e4b_A          280 AD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN  351 (452)
T ss_dssp             TT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT
T ss_pred             CC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh
Confidence            76   5667777777776 55     8999999999887 43   55667777766665    34899999999999887


Q ss_pred             CCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045814          369 GYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       369 ~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  406 (427)
                      |   +......|...|..    ..+.++|...|+...+.|..
T Consensus       352 g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~  390 (452)
T 3e4b_A          352 G---QNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTP  390 (452)
T ss_dssp             T---CTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCH
T ss_pred             C---hHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCH
Confidence            6   44556667777764    45888999999888877643

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.32  E-value=2.5e-10  Score=93.02  Aligned_cols=166  Identities=10%  Similarity=-0.020  Sum_probs=136.4

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG  313 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  313 (427)
                      ...+..+...+...|++++|...++++.+... .+..++..+...+...|++++|...++++.+.... +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~   85 (186)
T 3as5_A            8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADAPD-NVKVATVLGLT   85 (186)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHH
Confidence            34567777888889999999999988876542 35678888888899999999999999998776432 66788888888


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       314 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      +...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|
T Consensus        86 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A  163 (186)
T 3as5_A           86 YVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEA  163 (186)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHH
Confidence            999999999999999988764 3367788888889999999999999999988763 33678888899999999999999


Q ss_pred             HHHHHHHHHC
Q 045814          394 YHLFEEMAQK  403 (427)
Q Consensus       394 ~~~~~~m~~~  403 (427)
                      .+.+++..+.
T Consensus       164 ~~~~~~~~~~  173 (186)
T 3as5_A          164 LPHFKKANEL  173 (186)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHc
Confidence            9999988764

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.28  E-value=9.4e-11  Score=102.64  Aligned_cols=217  Identities=14%  Similarity=0.074  Sum_probs=105.7

Q ss_pred             HcCChhHHHHHHHHHHhc----------------chhHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 045814          185 KIDRTDLVWKLYHDLIES----------------GYLIQAFCNDGKVSEGYELLRQVLED------GLVP-ENTAFNKLI  241 (427)
Q Consensus       185 ~~~~~~~a~~~~~~~~~~----------------~~l~~~~~~~g~~~~a~~~~~~~~~~------~~~~-~~~~~~~li  241 (427)
                      ..|++++|...|++.++.                ..+...|...|++++|...+++....      +-.| ...++..+.
T Consensus        13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~   92 (283)
T 3edt_B           13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA   92 (283)
T ss_dssp             CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred             CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence            455666666665544431                12445555556666666666555432      1111 233555555


Q ss_pred             HHHHccCChhHHHHHHHHHhhC------CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC------CCCC-ChhhH
Q 045814          242 SRFCEKKNFGRVSELLHTMVAR------NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKER------GYVP-DTVMY  307 (427)
Q Consensus       242 ~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~------~~~p-~~~~~  307 (427)
                      ..+...|++++|.+.+++..+.      ...| ...++..+...|...|++++|...|+++.+.      +..| ...++
T Consensus        93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  172 (283)
T 3edt_B           93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK  172 (283)
T ss_dssp             HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence            5556666666666666555443      1011 2344555555555666666666666555433      1011 23345


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHc-------CCCCCH-HHHHHHHHHHhhcCC------HHHHHHHHHHHHHCCCCCC
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHK-------GLLPNE-YTYNSMIHGYCRIDN------LEEAKRLHKEMLDKGYGET  373 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~-------~~~p~~-~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~  373 (427)
                      ..+...|...|++++|...++++.+.       ...+.. ..+..+...+...+.      +..+...++.... ..+..
T Consensus       173 ~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~  251 (283)
T 3edt_B          173 NNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPTV  251 (283)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHHH
Confidence            55555555666666666666555442       111111 112222222222111      1111111111110 11123


Q ss_pred             hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          374 TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       374 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..++..+...|...|++++|.++|++..+
T Consensus       252 ~~~~~~la~~~~~~g~~~~A~~~~~~al~  280 (283)
T 3edt_B          252 NTTLRSLGALYRRQGKLEAAHTLEDCASR  280 (283)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            45788888999999999999999998765

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.27  E-value=2.4e-10  Score=113.00  Aligned_cols=166  Identities=13%  Similarity=0.008  Sum_probs=141.2

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      +..+|+.|...+.+.|++++|++.|++..+.... +..+|..+...|.+.|++++|+..|++..+.... +...|..+..
T Consensus         8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~   85 (723)
T 4gyw_A            8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGN   85 (723)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            4568899999999999999999999998887432 5678999999999999999999999999887543 5778999999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814          313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE  392 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  392 (427)
                      +|.+.|++++|++.|++..+.... +..+|+.+..+|...|++++|.+.|++..+.... +...|..+...|...|++++
T Consensus        86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~  163 (723)
T 4gyw_A           86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTD  163 (723)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTT
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHH
Confidence            999999999999999999887422 5778999999999999999999999999886422 57888999999999999999


Q ss_pred             HHHHHHHHHH
Q 045814          393 AYHLFEEMAQ  402 (427)
Q Consensus       393 A~~~~~~m~~  402 (427)
                      |.+.+++..+
T Consensus       164 A~~~~~kal~  173 (723)
T 4gyw_A          164 YDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            9988887755

>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2

Probab=99.27  E-value=2.9e-09  Score=97.56  Aligned_cols=267  Identities=11%  Similarity=-0.025  Sum_probs=177.4

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCH----hhHHHHHHHHHHcCChHHHHHHHHhc----CCCCCH----HhHHHHHH
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDL----VSCNVLFDSLVEARAFKVAMDFLDST----GFSPNP----NSLELYIQ  146 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~----~~~~~li~  146 (427)
                      +....+++..|...++....... ..+.    .+++.+...+...|++++|...+++.    ....+.    .++..+..
T Consensus        23 ~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~  101 (373)
T 1hz4_A           23 VAINDGNPDEAERLAKLALEELP-PGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE  101 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHTCC-TTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCCCHHHHHHHHHHHHHcCC-CCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence            44567999999999999866432 1122    25666777888999999999998762    111222    34677888


Q ss_pred             HHHhcCChhHHHHHHHHHHhcC----CC--c-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814          147 CLCESGLIEEAFCAFSKLKEMG----VF--G-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY  219 (427)
Q Consensus       147 ~~~~~~~~~~A~~~~~~m~~~g----~~--p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~  219 (427)
                      .+...|++++|.+.+++..+..    ..  | ....+..+...+...|++++|...+++.....                
T Consensus       102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~----------------  165 (373)
T 1hz4_A          102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVL----------------  165 (373)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT----------------
T ss_pred             HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh----------------
Confidence            8999999999999999887532    11  2 23345556666666666666666655443210                


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHH----HHHHHHHhcCChHHHHHHHH
Q 045814          220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYE----EVINGLCKSRKRLEAYRVFN  293 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~----~ll~~~~~~~~~~~a~~~~~  293 (427)
                            ...+......++..+...+...|++++|...+++.......++  .....    ..+..+...|++++|...++
T Consensus       166 ------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~  239 (373)
T 1hz4_A          166 ------SSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLR  239 (373)
T ss_dssp             ------TTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             ------hccCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence                  0011111234677788888899999999999988765422211  11111    23344778999999999998


Q ss_pred             HHHhCCCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          294 DLKERGYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNE-YTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       294 ~m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~-~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      +.......+.   ...+..+...+...|++++|...+++....    |..++. .++..+..++...|+.++|...+++.
T Consensus       240 ~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a  319 (373)
T 1hz4_A          240 HTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDA  319 (373)
T ss_dssp             HSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             hCCCCCCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence            8865432211   224567778888999999999999887643    222222 25666777888999999999999887


Q ss_pred             HHC
Q 045814          366 LDK  368 (427)
Q Consensus       366 ~~~  368 (427)
                      ...
T Consensus       320 l~~  322 (373)
T 1hz4_A          320 LKL  322 (373)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            653

>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}

Probab=99.26  E-value=9.2e-10  Score=101.24  Aligned_cols=218  Identities=9%  Similarity=-0.075  Sum_probs=159.3

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCC-CC----CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-----CC-CHhhHHH
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGL-VP----ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-----AP-DNFTYEE  274 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-----~~-~~~~~~~  274 (427)
                      ...+...|++++|...+++...... .+    ...++..+...|...|+++.|...+++..+...     .+ ...+++.
T Consensus       108 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~  187 (378)
T 3q15_A          108 GMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFV  187 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHH
T ss_pred             HHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHH
Confidence            3445677888888888888775321 12    245788888999999999999999988765311     11 2457888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCCHHHHHHH
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKER----GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPNEYTYNSM  345 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~~~~~~~l  345 (427)
                      +...|...|++++|...|++..+.    +..+ ...++..+...|...|++++|...+++..+.    +.+....++..+
T Consensus       188 lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l  267 (378)
T 3q15_A          188 IAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGL  267 (378)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHH
Confidence            999999999999999999988653    2111 2347788899999999999999999998872    222236778889


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHCC----CCCChhhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCC-HhHHHHHHH
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDKG----YGETTVTYNTLIAGLCLHGR---TDEAYHLFEEMAQKGIFRD-VITYNTLIQ  417 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~~----~~p~~~~~~~li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~~~~~li~  417 (427)
                      ...|.+.|++++|...+++..+..    -+.....+..+...|...|+   +.+|+.++++   .+..|+ ...+..+..
T Consensus       268 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~  344 (378)
T 3q15_A          268 SWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAA  344 (378)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHH
Confidence            999999999999999999988642    11123455666667777888   7777777776   333333 346667888


Q ss_pred             HHHhcCCCC
Q 045814          418 GYCKEGKIV  426 (427)
Q Consensus       418 ~~~~~g~~~  426 (427)
                      .|.+.|+++
T Consensus       345 ~y~~~g~~~  353 (378)
T 3q15_A          345 VFESSCHFE  353 (378)
T ss_dssp             HHHHTTCHH
T ss_pred             HHHHCCCHH
Confidence            888888764

>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A

Probab=99.24  E-value=6.1e-10  Score=90.69  Aligned_cols=159  Identities=14%  Similarity=0.064  Sum_probs=129.2

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...+...|++++|...++++..... .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus        15 ~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~   92 (186)
T 3as5_A           15 GISHAKAGRYSQAVMLLEQVYDADA-FDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYVQVQKY   92 (186)
T ss_dssp             HHHHHHHTCHHHHHHHHTTTCCTTS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHhCc-cChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCH
Confidence            3445556666666666666655433 267788889999999999999999999988774 33567888889999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ++|...++++.+.... +...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|.+.++..
T Consensus        93 ~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~  170 (186)
T 3as5_A           93 DLAVPLLIKVAEANPI-NFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALPHFKKA  170 (186)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCcH-hHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence            9999999998876433 67788888999999999999999999998874 335778888999999999999999999988


Q ss_pred             HHC
Q 045814          366 LDK  368 (427)
Q Consensus       366 ~~~  368 (427)
                      .+.
T Consensus       171 ~~~  173 (186)
T 3as5_A          171 NEL  173 (186)
T ss_dssp             HHH
T ss_pred             HHc
Confidence            764

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.23  E-value=1.9e-09  Score=91.50  Aligned_cols=194  Identities=8%  Similarity=-0.025  Sum_probs=117.4

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      ....+...|++++|+..|++.......++...+..+..++...|++++|.+.+++..+.... +...+..+...|...|+
T Consensus        13 ~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~   91 (228)
T 4i17_A           13 EGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSAAYRDMKN   91 (228)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHccc
Confidence            34456667777777777777776554345566666677777777777777777777665322 44566677777777777


Q ss_pred             hHHHHHHHHHHHhCCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHhhcCC
Q 045814          285 RLEAYRVFNDLKERGYVPDT-------VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHGYCRIDN  354 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~-------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~g~  354 (427)
                      +++|...|++..+.... +.       ..|..+...+...|++++|...++++.+.  .|+   ...+..+..+|...  
T Consensus        92 ~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~--  166 (228)
T 4i17_A           92 NQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGVLFYNN--  166 (228)
T ss_dssp             HHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHHHHHHH--
T ss_pred             HHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHHHHHHH--
Confidence            77777777777665322 23       34566666666777777777777777664  343   34455555555433  


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814          355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY  412 (427)
Q Consensus       355 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  412 (427)
                         +..+++.+...+. .+...|.....  ...+.+++|...+++..+.  .|+....
T Consensus       167 ---~~~~~~~a~~~~~-~~~~~~~~~~~--~~~~~~~~A~~~~~~a~~l--~p~~~~~  216 (228)
T 4i17_A          167 ---GADVLRKATPLAS-SNKEKYASEKA--KADAAFKKAVDYLGEAVTL--SPNRTEI  216 (228)
T ss_dssp             ---HHHHHHHHGGGTT-TCHHHHHHHHH--HHHHHHHHHHHHHHHHHHH--CTTCHHH
T ss_pred             ---HHHHHHHHHhccc-CCHHHHHHHHH--HHHHHHHHHHHHHHHHhhc--CCCCHHH
Confidence               3334444444321 13333333332  2345569999999999885  4554433

>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A

Probab=99.22  E-value=3.1e-10  Score=99.28  Aligned_cols=163  Identities=15%  Similarity=0.073  Sum_probs=112.8

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHC------CC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC------CCCC-CHh
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLED------GL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVAR------NRAP-DNF  270 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~------~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------~~~~-~~~  270 (427)
                      +...|...|++++|.+.+++....      .. .....++..+...+...|++++|...+++..+.      +..| ...
T Consensus        91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~  170 (283)
T 3edt_B           91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK  170 (283)
T ss_dssp             HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence            677889999999999999998864      11 224668888999999999999999999988775      1122 346


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhC-------CCCCChh-hHHHHHHHHHccCCHH------HHHHHHHHHHHcCCC
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKER-------GYVPDTV-MYTTVIHGLCKMGWLG------DARKMWFEMIHKGLL  336 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~-------~~~p~~~-~~~~li~~~~~~g~~~------~a~~~~~~m~~~~~~  336 (427)
                      ++..+...|...|++++|...+++..+.       ...+... .|..+...+...+...      .+...++.... ...
T Consensus       171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~  249 (283)
T 3edt_B          171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSP  249 (283)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCH
Confidence            7889999999999999999999998753       1222322 3333333333333322      22222222111 111


Q ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ....++..+...|...|++++|..++++..+.
T Consensus       250 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  281 (283)
T 3edt_B          250 TVNTTLRSLGALYRRQGKLEAAHTLEDCASRN  281 (283)
T ss_dssp             HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            23457888899999999999999999988753

>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*

Probab=99.18  E-value=1.1e-09  Score=108.36  Aligned_cols=154  Identities=12%  Similarity=0.037  Sum_probs=118.6

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHH
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAY  289 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~  289 (427)
                      .+.|++++|++.|++.++.... +..+|..+..+|.+.|++++|++.|++..+.... +...|..+...|.+.|++++|+
T Consensus        20 ~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~P~-~~~a~~nLg~~l~~~g~~~~A~   97 (723)
T 4gyw_A           20 REQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRISPT-FADAYSNMGNTLKEMQDVQGAL   97 (723)
T ss_dssp             HHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHH
Confidence            3344444444444444443322 5678888889999999999999999988877432 5678888999999999999999


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          290 RVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       290 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +.|++..+.... +...|+.+..+|.+.|++++|+..|++..+.... +...+..+..+|...|++++|.+.+++..+
T Consensus        98 ~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~-~~~a~~~L~~~l~~~g~~~~A~~~~~kal~  173 (723)
T 4gyw_A           98 QCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLKPD-FPDAYCNLAHCLQIVCDWTDYDERMKKLVS  173 (723)
T ss_dssp             HHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHhhhhhHHHhcccHHHHHHHHHHHHH
Confidence            999998876543 5678888999999999999999999998886422 467888888999999999988888887654

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.12  E-value=1.7e-07  Score=91.76  Aligned_cols=190  Identities=15%  Similarity=0.060  Sum_probs=112.9

Q ss_pred             CHHHHHHHHHHHHccCChhHHH-HHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC---------CC
Q 045814          233 ENTAFNKLISRFCEKKNFGRVS-ELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY---------VP  302 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~-~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~---------~p  302 (427)
                      ....|-..+..+...|+.++|. ++|++.... ++.+...|-..+...-+.|+++.|..+|+++.+...         .|
T Consensus       342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p  420 (679)
T 4e6h_A          342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP  420 (679)
T ss_dssp             CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred             CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence            3344445555555666667775 777777654 233455566666677777777777777777765310         12


Q ss_pred             C------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHc-C-CCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          303 D------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHK-G-LLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       303 ~------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~-~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +            ...|...+....+.|..+.|..+|.++.+. + ..+......+.+... ..++.+.|..+|+...+.
T Consensus       421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~-~~~d~e~Ar~ife~~Lk~  499 (679)
T 4e6h_A          421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH-ISKDTKTACKVLELGLKY  499 (679)
T ss_dssp             TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-TTSCCHHHHHHHHHHHHH
T ss_pred             cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-hCCCHHHHHHHHHHHHHH
Confidence            1            235666666666777777777777777765 2 112222222222211 124477777777777765


Q ss_pred             CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--CHhHHHHHHHHHHhcCCC
Q 045814          369 GYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFR--DVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       369 ~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p--~~~~~~~li~~~~~~g~~  425 (427)
                       ++-+...|...++.....|+.+.|..+|++.......+  ....|...++--.+.|+.
T Consensus       500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~  557 (679)
T 4e6h_A          500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSL  557 (679)
T ss_dssp             -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCS
T ss_pred             -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCH
Confidence             44456666677777777777777777777777653321  234666666666666654

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=99.12  E-value=2.7e-08  Score=86.87  Aligned_cols=179  Identities=12%  Similarity=0.059  Sum_probs=125.3

Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHH
Q 045814          218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLK  296 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~  296 (427)
                      |+..|+++...+ .++..++..+..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.+++|.
T Consensus        85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~  163 (310)
T 3mv2_B           85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT  163 (310)
T ss_dssp             CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            455666665544 34556666778888888999999999988876654 2245677888888999999999999999887


Q ss_pred             hCCCCC-----ChhhHHHHHHHHH--ccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          297 ERGYVP-----DTVMYTTVIHGLC--KMG--WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       297 ~~~~~p-----~~~~~~~li~~~~--~~g--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +.  .|     +..+...+..++.  ..|  +..+|..+|+++...  .|+..+...++.++.+.|++++|.+.++.+.+
T Consensus       164 ~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~  239 (310)
T 3mv2_B          164 NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS  239 (310)
T ss_dssp             HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred             hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence            75  34     2455555665533  233  788999999998665  45533444445578888999999999887654


Q ss_pred             CC---------CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          368 KG---------YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       368 ~~---------~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..         -+-|+.++..+|......|+  +|.++++++.+.
T Consensus       240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred             hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence            20         12356677566666666676  788888888875

>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}

Probab=99.11  E-value=1.2e-08  Score=86.42  Aligned_cols=192  Identities=9%  Similarity=-0.033  Sum_probs=116.0

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCC--CCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHH
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFS--PNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALL  181 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~--~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~  181 (427)
                      |+..+......+.+.|++++|.+.|++ ....  ++...+..+..++...|++++|++.|++..+.... +...|..+..
T Consensus         6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~   84 (228)
T 4i17_A            6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYN-LANAYIGKSA   84 (228)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCS-HHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcc-hHHHHHHHHH
Confidence            456666666666677777777777665 1212  45555555666677777777777777766664333 3445555555


Q ss_pred             HHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCH-------HHHHHHHHHHHccCChhHHH
Q 045814          182 GCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPEN-------TAFNKLISRFCEKKNFGRVS  254 (427)
Q Consensus       182 ~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~~~~~~a~  254 (427)
                      ++...|++++|...                          +++....... +.       ..|..+...+...|++++|.
T Consensus        85 ~~~~~~~~~~A~~~--------------------------~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~  137 (228)
T 4i17_A           85 AYRDMKNNQEYIAT--------------------------LTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAE  137 (228)
T ss_dssp             HHHHTTCHHHHHHH--------------------------HHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHcccHHHHHHH--------------------------HHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHH
Confidence            55555555444444                          4444443221 23       35777777888889999999


Q ss_pred             HHHHHHhhCCCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          255 ELLHTMVARNRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       255 ~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      +.|++..+.  .|+   ...+..+...|...     +...++++...+.. +...|....  ....+.+++|...+++..
T Consensus       138 ~~~~~al~~--~p~~~~~~~~~~l~~~~~~~-----~~~~~~~a~~~~~~-~~~~~~~~~--~~~~~~~~~A~~~~~~a~  207 (228)
T 4i17_A          138 ENYKHATDV--TSKKWKTDALYSLGVLFYNN-----GADVLRKATPLASS-NKEKYASEK--AKADAAFKKAVDYLGEAV  207 (228)
T ss_dssp             HHHHHHTTS--SCHHHHHHHHHHHHHHHHHH-----HHHHHHHHGGGTTT-CHHHHHHHH--HHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhc--CCCcccHHHHHHHHHHHHHH-----HHHHHHHHHhcccC-CHHHHHHHH--HHHHHHHHHHHHHHHHHh
Confidence            999888776  343   45666666666543     34445555554322 334444333  233466899999999998


Q ss_pred             HcC
Q 045814          332 HKG  334 (427)
Q Consensus       332 ~~~  334 (427)
                      +..
T Consensus       208 ~l~  210 (228)
T 4i17_A          208 TLS  210 (228)
T ss_dssp             HHC
T ss_pred             hcC
Confidence            863

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.10  E-value=4.9e-09  Score=92.66  Aligned_cols=206  Identities=9%  Similarity=-0.028  Sum_probs=142.3

Q ss_pred             hhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhC
Q 045814          189 TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED----GLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVAR  263 (427)
Q Consensus       189 ~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~  263 (427)
                      +++|...|+..      ...|...|++++|.+.|.+....    |-.+ ...+|+.+..+|.+.|++++|...+++..+.
T Consensus        33 ~~~A~~~~~~a------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l  106 (292)
T 1qqe_A           33 FEEAADLCVQA------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQI  106 (292)
T ss_dssp             HHHHHHHHHHH------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence            55555555544      23455566666666666655432    2111 1457888999999999999999999887654


Q ss_pred             CC---CC--CHhhHHHHHHHHHhc-CChHHHHHHHHHHHhCCCCC-C----hhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          264 NR---AP--DNFTYEEVINGLCKS-RKRLEAYRVFNDLKERGYVP-D----TVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       264 ~~---~~--~~~~~~~ll~~~~~~-~~~~~a~~~~~~m~~~~~~p-~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      ..   .+  -..+++.+...|... |++++|...|++..+..... +    ..++..+...+.+.|++++|...+++..+
T Consensus       107 ~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  186 (292)
T 1qqe_A          107 FTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIK  186 (292)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            21   11  135788888999996 99999999999986542110 1    34688889999999999999999999998


Q ss_pred             cCCCCCH------HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC------hhhHHHHHHHHH--hcCCHHHHHHHHH
Q 045814          333 KGLLPNE------YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET------TVTYNTLIAGLC--LHGRTDEAYHLFE  398 (427)
Q Consensus       333 ~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~li~~~~--~~g~~~~A~~~~~  398 (427)
                      .......      .+|..+..++...|++++|...|++..+.  .|+      ...+..++.+|.  ..+++++|++.|+
T Consensus       187 ~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~  264 (292)
T 1qqe_A          187 SSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFD  264 (292)
T ss_dssp             TTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHHHHHHHHTTCTTTHHHHHHHHT
T ss_pred             HHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhc
Confidence            6433222      15677788899999999999999998764  232      123455566664  4567888888887


Q ss_pred             HHHH
Q 045814          399 EMAQ  402 (427)
Q Consensus       399 ~m~~  402 (427)
                      ++..
T Consensus       265 ~~~~  268 (292)
T 1qqe_A          265 NFMR  268 (292)
T ss_dssp             TSSC
T ss_pred             cCCc
Confidence            7654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.09  E-value=8.5e-09  Score=78.86  Aligned_cols=129  Identities=13%  Similarity=0.151  Sum_probs=79.5

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR  351 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  351 (427)
                      |..+...+...|++++|..+++++.+.+.. +...+..+...+...|++++|..+++++...+ +.+...+..+...+..
T Consensus         4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~   81 (136)
T 2fo7_A            4 WYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK   81 (136)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHcCcHHHHHHHHHHHHHcCCc-chhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence            445555666666666666666666554322 44555566666666666666666666666553 2244556666666667


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       352 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+.
T Consensus        82 ~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           82 QGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             hcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            777777777777666542 224556666667777777777777777766653

>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=99.08  E-value=2.4e-08  Score=88.20  Aligned_cols=212  Identities=12%  Similarity=0.025  Sum_probs=146.2

Q ss_pred             ChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhc----CCCcC-HhhHHHHHHHHHHcCChhHHHHH
Q 045814          121 AFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEM----GVFGS-IKTWNSALLGCIKIDRTDLVWKL  195 (427)
Q Consensus       121 ~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~----g~~p~-~~~~~~ll~~~~~~~~~~~a~~~  195 (427)
                      ++++|.+.+++.            ...|...|++++|.+.|.+..+.    |-.++ ..+|+.+..+|.+.|++++|...
T Consensus        32 ~~~~A~~~~~~a------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~   99 (292)
T 1qqe_A           32 KFEEAADLCVQA------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDS   99 (292)
T ss_dssp             HHHHHHHHHHHH------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cHHHHHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHH
Confidence            477777777665            45677889999999998877653    22222 46788888888888888888888


Q ss_pred             HHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-CChhHHHHHHHHHhhCCCCC-C----H
Q 045814          196 YHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-KNFGRVSELLHTMVARNRAP-D----N  269 (427)
Q Consensus       196 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~~~~~-~----~  269 (427)
                      |++.++.      +...|+...+               ..+++.+...|... |++++|+..|++..+..... +    .
T Consensus       100 ~~~Al~l------~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~  158 (292)
T 1qqe_A          100 LENAIQI------FTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN  158 (292)
T ss_dssp             HHHHHHH------HHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHH------HHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHH
Confidence            7766542      2223332222               23577778888886 99999999998877642111 1    3


Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChh------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH----
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTV------MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE----  339 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~----  339 (427)
                      .++..+...|.+.|++++|...|++..+........      .|..+..++...|++++|...+++..+.  .|+.    
T Consensus       159 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~  236 (292)
T 1qqe_A          159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSR  236 (292)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC----------
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcH
Confidence            467888899999999999999999998765432221      4677778888999999999999998764  2321    


Q ss_pred             --HHHHHHHHHHh--hcCCHHHHHHHHHHHHH
Q 045814          340 --YTYNSMIHGYC--RIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       340 --~~~~~li~~~~--~~g~~~~a~~~~~~m~~  367 (427)
                        ..+..++.+|.  ..+++++|...|+.+..
T Consensus       237 ~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~  268 (292)
T 1qqe_A          237 ESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (292)
T ss_dssp             -HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHHHHHHHHcCCHHHHHHHHHHhccCCc
Confidence              13444556664  45678888888876654

>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A

Probab=99.03  E-value=2e-08  Score=76.73  Aligned_cols=130  Identities=12%  Similarity=0.142  Sum_probs=96.9

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC  315 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  315 (427)
                      .|..+...+...|++++|..+++++.+.+. .+...+..+...+...|++++|...++++.+.+.. +...+..+...+.
T Consensus         3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~   80 (136)
T 2fo7_A            3 AWYNLGNAYYKQGDYDEAIEYYQKALELDP-RSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR-SAEAWYNLGNAYY   80 (136)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCcHHHHHHHHHHHHHcCC-cchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCC-chHHHHHHHHHHH
Confidence            456677777778888888888887776542 25567777777788888888888888887765432 5567777788888


Q ss_pred             ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          316 KMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       316 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ..|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.
T Consensus        81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~  132 (136)
T 2fo7_A           81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL  132 (136)
T ss_dssp             TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred             HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence            8888888888888887764 235667777788888888888888888887764

>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A

Probab=99.03  E-value=1.4e-06  Score=85.24  Aligned_cols=210  Identities=11%  Similarity=0.071  Sum_probs=156.8

Q ss_pred             hHHHHHhcCChhHHH-HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC---------CCC------
Q 045814          205 LIQAFCNDGKVSEGY-ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---------APD------  268 (427)
Q Consensus       205 l~~~~~~~g~~~~a~-~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---------~~~------  268 (427)
                      .+..+...|+.++|. ++|++....- +.+...|-..+....+.|+++.|.++|+.+.....         .|+      
T Consensus       349 ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~  427 (679)
T 4e6h_A          349 MANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAIN  427 (679)
T ss_dssp             HHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHH
T ss_pred             HHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhh
Confidence            344455678888997 9999998743 33666777888888899999999999999886410         132      


Q ss_pred             ------HhhHHHHHHHHHhcCChHHHHHHHHHHHhC-CCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHHcCCCCCHH
Q 045814          269 ------NFTYEEVINGLCKSRKRLEAYRVFNDLKER-GYVPDTVMYTTVIHGLCKM-GWLGDARKMWFEMIHKGLLPNEY  340 (427)
Q Consensus       269 ------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~~~p~~~~~~~li~~~~~~-g~~~~a~~~~~~m~~~~~~p~~~  340 (427)
                            ..+|...++...+.|..+.|..+|.+..+. +. .....|...+..-.+. ++.+.|..+|+...+. ..-+..
T Consensus       428 ~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~  505 (679)
T 4e6h_A          428 QLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGE  505 (679)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHH
T ss_pred             hhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchH
Confidence                  236888888888899999999999999876 22 1233443333333344 4589999999999887 333566


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE--TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQG  418 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~  418 (427)
                      .+...+......|+.+.|..+|++.......+  ....|...+..-.+.|+.+.+.++.+++.+.  .|+......+++-
T Consensus       506 ~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~--~P~~~~~~~f~~r  583 (679)
T 4e6h_A          506 YINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEK--FPEVNKLEEFTNK  583 (679)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHH--STTCCHHHHHHHH
T ss_pred             HHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCcHHHHHHHH
Confidence            67788888888999999999999998764321  3568999999889999999999999999986  4555555555554


Q ss_pred             H
Q 045814          419 Y  419 (427)
Q Consensus       419 ~  419 (427)
                      |
T Consensus       584 y  584 (679)
T 4e6h_A          584 Y  584 (679)
T ss_dssp             T
T ss_pred             h
Confidence            4

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.98  E-value=2.5e-08  Score=83.25  Aligned_cols=137  Identities=12%  Similarity=0.030  Sum_probs=86.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN  354 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  354 (427)
                      +...|.+.|++++|...|++..+.... +...+..+...+...|++++|...|++..+... -+..++..+..+|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEA-DNLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHHhH
Confidence            677777888888888888887776543 566777788888888888888888888877642 245667777666655543


Q ss_pred             --HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHH
Q 045814          355 --LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQ  417 (427)
Q Consensus       355 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~  417 (427)
                        .+.+...++....  ..|....+.....++...|++++|...|++..+  +.|+......+.+
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~  198 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK  198 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence              3344444444432  122222333445556667888888888888776  3566555544433

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.98  E-value=1.1e-07  Score=79.63  Aligned_cols=180  Identities=11%  Similarity=-0.003  Sum_probs=142.3

Q ss_pred             hHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC----ChHHHHHH
Q 045814          216 SEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR----KRLEAYRV  291 (427)
Q Consensus       216 ~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~----~~~~a~~~  291 (427)
                      .+|++.|++..+.|   +...+..+...|...+++++|.+.|++..+.|   +...+..+...|.. +    ++++|...
T Consensus         3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~   75 (212)
T 3rjv_A            3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQL   75 (212)
T ss_dssp             -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred             chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence            35677777777764   66788888888888999999999999988876   55677777777777 6    89999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHhh----cCCHHHHHHHH
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLL-PNEYTYNSMIHGYCR----IDNLEEAKRLH  362 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~-p~~~~~~~li~~~~~----~g~~~~a~~~~  362 (427)
                      |++..+.|   +...+..+...|..    .+++++|..+|++..+.|.. .+...+..|...|..    .+++++|...|
T Consensus        76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~  152 (212)
T 3rjv_A           76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF  152 (212)
T ss_dssp             HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred             HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence            99998765   56677778888877    78999999999999887632 125677788888877    78999999999


Q ss_pred             HHHHHCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCCCCC
Q 045814          363 KEMLDKGYGETTVTYNTLIAGLCLH-G-----RTDEAYHLFEEMAQKGIFR  407 (427)
Q Consensus       363 ~~m~~~~~~p~~~~~~~li~~~~~~-g-----~~~~A~~~~~~m~~~g~~p  407 (427)
                      ++..+.  ..+...+..|...|... |     +.++|.+.|++..+.|...
T Consensus       153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~  201 (212)
T 3rjv_A          153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDT  201 (212)
T ss_dssp             HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHH
T ss_pred             HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHH
Confidence            999886  23555777787777654 3     8999999999998887543

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.98  E-value=4e-08  Score=85.15  Aligned_cols=170  Identities=12%  Similarity=0.039  Sum_probs=111.2

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC-hhhHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD-TVMYT  308 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~-~~~~~  308 (427)
                      +...+..+...+.+.|++++|...|+++.+......  ...+..+..+|.+.|++++|...|++..+.... |. ...+.
T Consensus        14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~   93 (261)
T 3qky_A           14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY   93 (261)
T ss_dssp             SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence            445566666677777777777777777776532211  456666777777777777777777777665321 11 33455


Q ss_pred             HHHHHHHc--------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHhhcCCHHHHHHHHH
Q 045814          309 TVIHGLCK--------MGWLGDARKMWFEMIHKGLLPNEYTY-----------------NSMIHGYCRIDNLEEAKRLHK  363 (427)
Q Consensus       309 ~li~~~~~--------~g~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~  363 (427)
                      .+..++..        .|++++|...|+++.+.... +....                 ..+...|.+.|++++|...|+
T Consensus        94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~  172 (261)
T 3qky_A           94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYE  172 (261)
T ss_dssp             HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred             HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHH
Confidence            56666666        77777777777777765311 12222                 445677888888888888888


Q ss_pred             HHHHCCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHC
Q 045814          364 EMLDKGYGE--TTVTYNTLIAGLCLH----------GRTDEAYHLFEEMAQK  403 (427)
Q Consensus       364 ~m~~~~~~p--~~~~~~~li~~~~~~----------g~~~~A~~~~~~m~~~  403 (427)
                      .+.+.....  ....+..+..+|...          |++++|...|+++.+.
T Consensus       173 ~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          173 AVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             HHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence            887652211  234666777777765          7888888888888775

>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B

Probab=98.97  E-value=1.3e-07  Score=82.44  Aligned_cols=157  Identities=9%  Similarity=0.039  Sum_probs=110.8

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-----CHhhHHHHHHH-
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGL-VPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-----DNFTYEEVING-  278 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-----~~~~~~~ll~~-  278 (427)
                      ..++...|++++|++++.+.+..+. .-+...+..++..+.+.|+.+.|.+.++.|.+.  .|     +..+...+..+ 
T Consensus       107 a~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~  184 (310)
T 3mv2_B          107 ATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESY  184 (310)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHH
Confidence            3444556666666677766655553 226677888899999999999999999999776  45     35566666655 


Q ss_pred             -HHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---------CCCCHHHHHHHH
Q 045814          279 -LCKSR--KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---------LLPNEYTYNSMI  346 (427)
Q Consensus       279 -~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---------~~p~~~~~~~li  346 (427)
                       ....|  ++.+|..+|+++.+.  .|+..+-..++.++.+.|++++|...++.+.+.-         -+-|..++..+|
T Consensus       185 v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i  262 (310)
T 3mv2_B          185 IKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQI  262 (310)
T ss_dssp             HHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHH
T ss_pred             HHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHH
Confidence             33334  899999999998765  3443333445558889999999999998766531         123566775666


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHC
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ......|+  +|.+++.++.+.
T Consensus       263 ~l~~~lgk--~a~~l~~qL~~~  282 (310)
T 3mv2_B          263 TLALMQGL--DTEDLTNQLVKL  282 (310)
T ss_dssp             HHHHHTTC--TTHHHHHHHHHT
T ss_pred             HHHHHhCh--HHHHHHHHHHHh
Confidence            66666676  889999999886

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.94  E-value=1.9e-08  Score=89.58  Aligned_cols=227  Identities=10%  Similarity=0.002  Sum_probs=161.7

Q ss_pred             hcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCC
Q 045814          150 ESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDG  229 (427)
Q Consensus       150 ~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~  229 (427)
                      ..|++++|.+++++..+.... .   +      +...++++.|...|..+      ...|...|++++|...+.+.....
T Consensus         3 ~~~~~~eA~~~~~~a~k~~~~-~---~------~~~~~~~~~A~~~~~~a------~~~~~~~g~~~~A~~~~~~al~~~   66 (307)
T 2ifu_A            3 AAQKISEAHEHIAKAEKYLKT-S---F------MKWKPDYDSAASEYAKA------AVAFKNAKQLEQAKDAYLQEAEAH   66 (307)
T ss_dssp             CHHHHHHHHHHHHHHHHHHCC-C---S------SSCSCCHHHHHHHHHHH------HHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred             ccchHHHHHHHHHHHHHHccc-c---c------cCCCCCHHHHHHHHHHH------HHHHHHcCCHHHHHHHHHHHHHHH
Confidence            357889999999988764211 1   1      11158899999999876      456888999999999998876531


Q ss_pred             C----CC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC---CCC--HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814          230 L----VP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APD--NFTYEEVINGLCKSRKRLEAYRVFNDLKERG  299 (427)
Q Consensus       230 ~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  299 (427)
                      .    .. -..+|+.+...|.+.|++++|...|++..+...   .+.  ..++..+...|.. |++++|+..|++..+..
T Consensus        67 ~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~  145 (307)
T 2ifu_A           67 ANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVF  145 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHH
Confidence            1    11 145788888999999999999999998765311   222  3577788888888 99999999999886542


Q ss_pred             CCC-----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 045814          300 YVP-----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG  369 (427)
Q Consensus       300 ~~p-----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  369 (427)
                      ...     ...++..+...|.+.|++++|+..+++..+.    +..+. ..++..+..++...|++++|...|++.. . 
T Consensus       146 ~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~al-~-  223 (307)
T 2ifu_A          146 ENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRESY-S-  223 (307)
T ss_dssp             HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHT-T-
T ss_pred             HhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHh-C-
Confidence            111     1457888889999999999999999998764    21111 2256666777888899999999999988 4 


Q ss_pred             CCCCh------hhHHHHHHHHHhcCCHHHHHHHH
Q 045814          370 YGETT------VTYNTLIAGLCLHGRTDEAYHLF  397 (427)
Q Consensus       370 ~~p~~------~~~~~li~~~~~~g~~~~A~~~~  397 (427)
                       .|+.      .....++.++ ..|+.+.+.++.
T Consensus       224 -~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~~  255 (307)
T 2ifu_A          224 -IPGFSGSEDCAALEDLLQAY-DEQDEEQLLRVC  255 (307)
T ss_dssp             -STTSTTSHHHHHHHHHHHHH-HTTCHHHHHHHT
T ss_pred             -CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHHH
Confidence             2321      2344555555 678877766643

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.93  E-value=9.2e-09  Score=101.97  Aligned_cols=173  Identities=9%  Similarity=-0.108  Sum_probs=141.1

Q ss_pred             HhcCChhHHHHHHHHHH--------HCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh
Q 045814          210 CNDGKVSEGYELLRQVL--------EDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK  281 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~--------~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~  281 (427)
                      ...|++++|++.+++..        .... .+...+..+...+...|++++|.+.|++..+.+.. +...|..+...|.+
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p-~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDFS-ESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CCT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhcccccccccc-cchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            67889999999999988        4322 25678888899999999999999999999887432 66788999999999


Q ss_pred             cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814          282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~  361 (427)
                      .|++++|...|++..+.... +...|..+..++.+.|++++ ...|++..+.+. -+...|..+..++.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999887543 56788899999999999999 999999998743 2567889999999999999999999


Q ss_pred             HHHHHHCCCCCC-hhhHHHHHHHHHhcCC
Q 045814          362 HKEMLDKGYGET-TVTYNTLIAGLCLHGR  389 (427)
Q Consensus       362 ~~~m~~~~~~p~-~~~~~~li~~~~~~g~  389 (427)
                      |++..+.  .|+ ...|..+..++...|+
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~~  583 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGRS  583 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC----
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccCC
Confidence            9998875  344 5677777777766554

>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}

Probab=98.93  E-value=4.1e-08  Score=85.08  Aligned_cols=159  Identities=13%  Similarity=0.101  Sum_probs=107.0

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCC-HhhHHHHHHHHHh-
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLVPE---NTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APD-NFTYEEVINGLCK-  281 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~-~~~~~~ll~~~~~-  281 (427)
                      .+.+.|++++|...|+++...... +   ...+..+..++.+.|++++|...|++..+..+ .|. ...+..+..++.. 
T Consensus        24 ~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~  102 (261)
T 3qky_A           24 EFYNQGKYDRAIEYFKAVFTYGRT-HEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKL  102 (261)
T ss_dssp             HHHHTTCHHHHHHHHHHHGGGCSC-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHHhCCC-CcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHh
Confidence            344555556666666665554322 2   45666777777778888888888887777533 112 3455666666766 


Q ss_pred             -------cCChHHHHHHHHHHHhCCCCCChhhH-----------------HHHHHHHHccCCHHHHHHHHHHHHHcCCCC
Q 045814          282 -------SRKRLEAYRVFNDLKERGYVPDTVMY-----------------TTVIHGLCKMGWLGDARKMWFEMIHKGLLP  337 (427)
Q Consensus       282 -------~~~~~~a~~~~~~m~~~~~~p~~~~~-----------------~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  337 (427)
                             .|++++|...|+++.+.... +....                 ..+...|.+.|++++|...|+++.+.....
T Consensus       103 ~~~~~~~~~~~~~A~~~~~~~l~~~p~-~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~  181 (261)
T 3qky_A          103 SPPYELDQTDTRKAIEAFQLFIDRYPN-HELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEAVFDAYPDT  181 (261)
T ss_dssp             CCCTTSCCHHHHHHHHHHHHHHHHCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTS
T ss_pred             cccccccchhHHHHHHHHHHHHHHCcC-chhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCC
Confidence                   77888888888877765322 22222                 456778889999999999999998763221


Q ss_pred             --CHHHHHHHHHHHhhc----------CCHHHHHHHHHHHHHC
Q 045814          338 --NEYTYNSMIHGYCRI----------DNLEEAKRLHKEMLDK  368 (427)
Q Consensus       338 --~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~  368 (427)
                        ....+..+..+|...          |++++|...|+.+.+.
T Consensus       182 ~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~  224 (261)
T 3qky_A          182 PWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI  224 (261)
T ss_dssp             TTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence              234677777778766          8889999999999875

>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}

Probab=98.92  E-value=3.6e-08  Score=82.28  Aligned_cols=135  Identities=8%  Similarity=0.010  Sum_probs=99.8

Q ss_pred             HHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC
Q 045814          240 LISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW  319 (427)
Q Consensus       240 li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  319 (427)
                      +..++.+.|++++|...|++..+..+. +...+..+...|...|++++|...|++..+.... +..+|..+...|...|+
T Consensus        60 lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~  137 (208)
T 3urz_A           60 LALAYKKNRNYDKAYLFYKELLQKAPN-NVDCLEACAEMQVCRGQEKDALRMYEKILQLEAD-NLAANIFLGNYYYLTAE  137 (208)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHHhH
Confidence            888899999999999999999887533 6788999999999999999999999999887544 67788888888766554


Q ss_pred             --HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814          320 --LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL  380 (427)
Q Consensus       320 --~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  380 (427)
                        .+.+...++....  ..|....+.....++...|++++|...|++..+.  .|+......+
T Consensus       138 ~~~~~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~~~l  196 (208)
T 3urz_A          138 QEKKKLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQKTL  196 (208)
T ss_dssp             HHHHHHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHHHHH
Confidence              3445555555432  2333334444556677789999999999999875  5665544433

>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}

Probab=98.92  E-value=2.8e-08  Score=88.45  Aligned_cols=213  Identities=11%  Similarity=0.045  Sum_probs=138.3

Q ss_pred             cCChHHHHHHHHhcC-CCCCHHhHHHHHHHHHh-cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHH
Q 045814          119 ARAFKVAMDFLDSTG-FSPNPNSLELYIQCLCE-SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLY  196 (427)
Q Consensus       119 ~~~~~~a~~~~~~~~-~~~~~~~~~~li~~~~~-~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~  196 (427)
                      .|++++|.+++++.. ..+.         .+.+ .+++++|...|.+.               ...|...|++++|...|
T Consensus         4 ~~~~~eA~~~~~~a~k~~~~---------~~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~   59 (307)
T 2ifu_A            4 AQKISEAHEHIAKAEKYLKT---------SFMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY   59 (307)
T ss_dssp             HHHHHHHHHHHHHHHHHHCC---------CSSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHHccc---------cccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence            466777877777531 0110         1222 46777777777654               45667788888888888


Q ss_pred             HHHHhcc--------------hhHHHHHhcCChhHHHHHHHHHHHCC---CCC--CHHHHHHHHHHHHccCChhHHHHHH
Q 045814          197 HDLIESG--------------YLIQAFCNDGKVSEGYELLRQVLEDG---LVP--ENTAFNKLISRFCEKKNFGRVSELL  257 (427)
Q Consensus       197 ~~~~~~~--------------~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~--~~~~~~~li~~~~~~~~~~~a~~~~  257 (427)
                      .+..+..              .+...|...|++++|+..+++....-   -.+  -..++..+...|.. |++++|+..|
T Consensus        60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~  138 (307)
T 2ifu_A           60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLY  138 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHH
Confidence            7766541              25667778889999998888776431   111  13567777788877 8999999888


Q ss_pred             HHHhhCCCCC-----CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHccCCHHHHHHHH
Q 045814          258 HTMVARNRAP-----DNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVPD-TVMYTTVIHGLCKMGWLGDARKMW  327 (427)
Q Consensus       258 ~~m~~~~~~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~  327 (427)
                      ++..+.....     ...++..+...|.+.|++++|...|++..+.    +..+. ...+..+...+...|++++|...|
T Consensus       139 ~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~  218 (307)
T 2ifu_A          139 QQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCV  218 (307)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             HHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence            8776542111     1356777888888899999999988887653    11111 225566667777778999999999


Q ss_pred             HHHHHcCCCCCH------HHHHHHHHHHhhcCCHHHHHH
Q 045814          328 FEMIHKGLLPNE------YTYNSMIHGYCRIDNLEEAKR  360 (427)
Q Consensus       328 ~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~  360 (427)
                      ++.. .  .|+.      .....++.++ ..|+.+.+.+
T Consensus       219 ~~al-~--~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~  253 (307)
T 2ifu_A          219 RESY-S--IPGFSGSEDCAALEDLLQAY-DEQDEEQLLR  253 (307)
T ss_dssp             HHHT-T--STTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred             HHHh-C--CCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence            8887 4  2321      1234445554 5566665555

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.88  E-value=8.3e-09  Score=81.24  Aligned_cols=141  Identities=8%  Similarity=-0.098  Sum_probs=70.8

Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHH
Q 045814          244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDA  323 (427)
Q Consensus       244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  323 (427)
                      +...|++++|+..+........ -+...+-.+...|.+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|
T Consensus         7 ~~~~~~~e~ai~~~~~a~~~~p-~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A   84 (150)
T 4ga2_A            7 RRSKADVERYIASVQGSTPSPR-QKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQER-DPKAHRFLGLLYELEENTDKA   84 (150)
T ss_dssp             CCCHHHHHHHHHHHHHHSCSHH-HHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcChHHHHHHHHHHhcccCc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCchHHH
Confidence            3344555555555555443311 12234445555555666666666666655554332 445555555666666666666


Q ss_pred             HHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcC
Q 045814          324 RKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRL-HKEMLDKGYGETTVTYNTLIAGLCLHG  388 (427)
Q Consensus       324 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~-~~~m~~~~~~p~~~~~~~li~~~~~~g  388 (427)
                      ...|++..+.... +..++..+...|.+.|++++|.+. +++..+.. +-++.+|......+...|
T Consensus        85 ~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G  148 (150)
T 4ga2_A           85 VECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG  148 (150)
T ss_dssp             HHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence            6666665554211 344555555556666655544433 35544432 113444554444444444

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.88  E-value=2e-06  Score=75.68  Aligned_cols=151  Identities=5%  Similarity=0.048  Sum_probs=64.3

Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChh--HHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC------
Q 045814          213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFG--RVSELLHTMVARNRAPDNFTYEEVINGLCKSRK------  284 (427)
Q Consensus       213 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~------  284 (427)
                      +++++++++++.+.....+ +-.+|+--...+.+.|.++  ++++.++++.+.++. |...|+.-...+.+.++      
T Consensus       124 ~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~  201 (306)
T 3dra_A          124 FDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNT  201 (306)
T ss_dssp             CCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHH
T ss_pred             CCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhh
Confidence            3445555555555544333 4445544444444455554  555555555554322 34444444333333333      


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHH-HHHHHHHHHHHcC--CCCCHHHHHHHHHHHhhcCCHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLG-DARKMWFEMIHKG--LLPNEYTYNSMIHGYCRIDNLEEAKRL  361 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~-~a~~~~~~m~~~~--~~p~~~~~~~li~~~~~~g~~~~a~~~  361 (427)
                      ++++++.++++....+. |...|+-+-..+.+.|+.. .+..+..++.+.+  -..+...+..+...|.+.|+.++|.++
T Consensus       202 ~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~  280 (306)
T 3dra_A          202 IDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV  280 (306)
T ss_dssp             HHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence            44444444444444332 4444444444444444322 2223333332221  011333444444444444444444444


Q ss_pred             HHHHH
Q 045814          362 HKEML  366 (427)
Q Consensus       362 ~~~m~  366 (427)
                      ++.+.
T Consensus       281 ~~~l~  285 (306)
T 3dra_A          281 YDLLK  285 (306)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            44443

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.88  E-value=3.2e-07  Score=77.50  Aligned_cols=178  Identities=11%  Similarity=0.011  Sum_probs=98.1

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCC-C-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH--hhHHHHHHHHHh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLV-P-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN--FTYEEVINGLCK  281 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~-~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~--~~~~~ll~~~~~  281 (427)
                      ...+...|++++|...|+++...... | ....+..+..++.+.|++++|...|+++.+..+....  ..+..+..++.+
T Consensus        11 a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g~~~~~   90 (225)
T 2yhc_A           11 AQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRGLTNMA   90 (225)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHHHHHHh
Confidence            34556666777777777766654322 1 1245555666666667777777777666655322111  123333333332


Q ss_pred             cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH-H-----------------HHH
Q 045814          282 SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE-Y-----------------TYN  343 (427)
Q Consensus       282 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~-----------------~~~  343 (427)
                      .+..     .+            ..|..+...+...|+.++|...|+++.+..  |+. .                 ...
T Consensus        91 ~~~~-----~~------------~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l~~~~~~~~~~~~  151 (225)
T 2yhc_A           91 LDDS-----AL------------QGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRLVFLKDRLAKYEY  151 (225)
T ss_dssp             HHC-------------------------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhhh-----hh------------hhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHHHHHHHHHHHHHH
Confidence            1100     00            000000111112344444544444444431  111 1                 112


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHCCCCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEMLDKGYGET----TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG  404 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  404 (427)
                      .+...|.+.|++++|...|+++.+..  |+    ...+..+..+|.+.|++++|.+.++.+...+
T Consensus       152 ~~a~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          152 SVAEYYTERGAWVAVVNRVEGMLRDY--PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHS--TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHcCcHHHHHHHHHHHHHHC--cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence            45567888999999999999998762  33    2568888899999999999999999988764

>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*

Probab=98.87  E-value=1.6e-08  Score=79.51  Aligned_cols=145  Identities=12%  Similarity=-0.051  Sum_probs=113.9

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN  354 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  354 (427)
                      |...+...|++++|+..+......... +...+-.+...|.+.|++++|+..|++..+... -+..+|..+..+|...|+
T Consensus         3 LG~~~~~~~~~e~ai~~~~~a~~~~p~-~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~~~   80 (150)
T 4ga2_A            3 LGSMRRSKADVERYIASVQGSTPSPRQ-KSIKGFYFAKLYYEAKEYDLAKKYICTYINVQE-RDPKAHRFLGLLYELEEN   80 (150)
T ss_dssp             ----CCCHHHHHHHHHHHHHHSCSHHH-HHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred             hHHHHHHcChHHHHHHHHHHhcccCcc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCc
Confidence            344566778999999999988765322 455677789999999999999999999998753 367899999999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-CHhHHHHHHHHHHhcCC
Q 045814          355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL-FEEMAQKGIFR-DVITYNTLIQGYCKEGK  424 (427)
Q Consensus       355 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~-~~~m~~~g~~p-~~~~~~~li~~~~~~g~  424 (427)
                      +++|...|++..+.... +...|..+...|.+.|++++|.+. +++..+.  .| +...|......+.+.|+
T Consensus        81 ~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l--~P~~~~~~~l~~~ll~~~G~  149 (150)
T 4ga2_A           81 TDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKL--FPGSPAVYKLKEQLLDCEGE  149 (150)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH--STTCHHHHHHHHHHHHTCCC
T ss_pred             hHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHhCc
Confidence            99999999999986422 678899999999999999877665 5887774  34 45677777777777764

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.85  E-value=3.6e-08  Score=79.84  Aligned_cols=163  Identities=12%  Similarity=0.048  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-H
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-L  314 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~  314 (427)
                      .+..+...+...|++++|...+++..+..+ .+...+..+...+.+.|++++|...|++..+..  |+...+...... +
T Consensus         8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~   84 (176)
T 2r5s_A            8 QLLKQVSELLQQGEHAQALNVIQTLSDELQ-SRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLEL   84 (176)
T ss_dssp             THHHHHHHHHHTTCHHHHHHHHHTSCHHHH-TSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHH
Confidence            345566677888888888888887766532 256678888888888899999988888876653  333333222211 1


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHH
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A  393 (427)
                      ...+...+|...+++..+... -+...+..+..++...|++++|...|+++.+....+ +...+..+...+...|+.++|
T Consensus        85 ~~~~~~~~a~~~~~~al~~~P-~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A  163 (176)
T 2r5s_A           85 HQQAAESPELKRLEQELAANP-DNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAI  163 (176)
T ss_dssp             HHHHTSCHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHH
T ss_pred             HhhcccchHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcH
Confidence            222333457888888877632 256778888888999999999999999988764332 355788888899999999999


Q ss_pred             HHHHHHHHH
Q 045814          394 YHLFEEMAQ  402 (427)
Q Consensus       394 ~~~~~~m~~  402 (427)
                      ...|++...
T Consensus       164 ~~~y~~al~  172 (176)
T 2r5s_A          164 ASKYRRQLY  172 (176)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            988887654

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.85  E-value=8.8e-08  Score=93.04  Aligned_cols=154  Identities=10%  Similarity=-0.009  Sum_probs=115.8

Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHH
Q 045814          212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRV  291 (427)
Q Consensus       212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~  291 (427)
                      .|++++|.+.+++..+.... +...+..+...+...|++++|.+.+++..+... .+...+..+...|...|++++|.+.
T Consensus         2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~   79 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALHP-GHPEAVARLGRVRWTQQRHAEAAVL   79 (568)
T ss_dssp             -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTST-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHCCCHHHHHHH
Confidence            47889999999988876443 678899999999999999999999999988753 3577888999999999999999999


Q ss_pred             HHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---CCHHHHHHHHHHHHHC
Q 045814          292 FNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI---DNLEEAKRLHKEMLDK  368 (427)
Q Consensus       292 ~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~  368 (427)
                      |++..+.... +...+..+..+|.+.|++++|...+++..+... .+...+..+..++...   |+.++|.+.+++..+.
T Consensus        80 ~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~  157 (568)
T 2vsy_A           80 LQQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLLP-EEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ  157 (568)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence            9999877543 577888999999999999999999999988742 3567888888999999   9999999999999886


Q ss_pred             C
Q 045814          369 G  369 (427)
Q Consensus       369 ~  369 (427)
                      +
T Consensus       158 ~  158 (568)
T 2vsy_A          158 G  158 (568)
T ss_dssp             T
T ss_pred             C
Confidence            4

>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*

Probab=98.85  E-value=9e-08  Score=92.98  Aligned_cols=146  Identities=9%  Similarity=-0.046  Sum_probs=104.8

Q ss_pred             cCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHH
Q 045814          186 IDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELL  257 (427)
Q Consensus       186 ~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~  257 (427)
                      .|++++|...|++..+.+        .+...+...|++++|.+.+++..+.... +...+..+...+...|++++|.+.+
T Consensus         2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~   80 (568)
T 2vsy_A            2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALHPG-HPEAVARLGRVRWTQQRHAEAAVLL   80 (568)
T ss_dssp             -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTT-CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHH
Confidence            367788888888877653        3677788889999999999988876543 6778888888899999999999999


Q ss_pred             HHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCHHHHHHHHHHHHHcC
Q 045814          258 HTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWLGDARKMWFEMIHKG  334 (427)
Q Consensus       258 ~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~~~a~~~~~~m~~~~  334 (427)
                      ++..+... .+...+..+...|.+.|++++|.+.|++..+.... +...+..+...+...   |+.++|...+++..+.+
T Consensus        81 ~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~  158 (568)
T 2vsy_A           81 QQASDAAP-EHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPE-EPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG  158 (568)
T ss_dssp             HHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred             HHHHhcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence            98887743 25678888888899999999999999988776443 567788888888888   89999999999888774

>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}

Probab=98.84  E-value=3.1e-08  Score=80.26  Aligned_cols=157  Identities=10%  Similarity=0.073  Sum_probs=109.0

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCh
Q 045814          207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-LCKSRKR  285 (427)
Q Consensus       207 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~  285 (427)
                      ..+...|++++|...+++.....+. +...+..+...+...|++++|...+++......  +...+...... +...+..
T Consensus        14 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p--~~~~~~~~~~~~~~~~~~~   90 (176)
T 2r5s_A           14 SELLQQGEHAQALNVIQTLSDELQS-RGDVKLAKADCLLETKQFELAQELLATIPLEYQ--DNSYKSLIAKLELHQQAAE   90 (176)
T ss_dssp             HHHHHTTCHHHHHHHHHTSCHHHHT-SHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGC--CHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccC--ChHHHHHHHHHHHHhhccc
Confidence            3455666777777777665543322 567788888888889999999998888766533  43333222211 1222333


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      .+|...+++..+.... +...+..+...+...|++++|...++++.+....+ +...+..+...+...|+.++|...|++
T Consensus        91 ~~a~~~~~~al~~~P~-~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~  169 (176)
T 2r5s_A           91 SPELKRLEQELAANPD-NFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRR  169 (176)
T ss_dssp             CHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHH
T ss_pred             chHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence            4578888888776433 56788888888999999999999999988765332 345788888888899999999988887


Q ss_pred             HHH
Q 045814          365 MLD  367 (427)
Q Consensus       365 m~~  367 (427)
                      ...
T Consensus       170 al~  172 (176)
T 2r5s_A          170 QLY  172 (176)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            654

>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}

Probab=98.82  E-value=3.9e-06  Score=73.81  Aligned_cols=226  Identities=9%  Similarity=0.024  Sum_probs=166.2

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC
Q 045814          149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED  228 (427)
Q Consensus       149 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  228 (427)
                      .+....++|+++++++...+.. +...|+.--..+...+.                        .+++++++.++.+...
T Consensus        44 ~~~e~s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~------------------------~~~~eeL~~~~~~L~~   98 (306)
T 3dra_A           44 KAEEYSERALHITELGINELAS-HYTIWIYRFNILKNLPN------------------------RNLYDELDWCEEIALD   98 (306)
T ss_dssp             HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTT------------------------SCHHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHccc------------------------ccHHHHHHHHHHHHHH
Confidence            3344456888988888886544 45556654444444330                        2566666666666665


Q ss_pred             CCCCCHHHHHHHHHHH----Hcc---CChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH--HHHHHHHHHHhCC
Q 045814          229 GLVPENTAFNKLISRF----CEK---KNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL--EAYRVFNDLKERG  299 (427)
Q Consensus       229 ~~~~~~~~~~~li~~~----~~~---~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~--~a~~~~~~m~~~~  299 (427)
                      .++ +..+|+.--..+    ...   +++++++++++.+.+...+ +..+|+--.-.+.+.|.++  ++++.++++.+..
T Consensus        99 nPk-~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~pk-ny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d  176 (306)
T 3dra_A           99 NEK-NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSDPK-NHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD  176 (306)
T ss_dssp             CTT-CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC
T ss_pred             Ccc-cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC
Confidence            544 444555544444    444   7899999999999987644 7778888777788888888  9999999999887


Q ss_pred             CCCChhhHHHHHHHHHccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHCC--C
Q 045814          300 YVPDTVMYTTVIHGLCKMGW------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL-EEAKRLHKEMLDKG--Y  370 (427)
Q Consensus       300 ~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~--~  370 (427)
                      +. |...|+.-...+...++      ++++++.++++...... |...|+-.-..+.+.|.. +.+..+..++.+.+  -
T Consensus       177 ~~-N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~  254 (306)
T 3dra_A          177 LK-NNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQ  254 (306)
T ss_dssp             TT-CHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTE
T ss_pred             CC-CHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCC
Confidence            66 78888877777777776      89999999999988644 788898888888888874 44556777666543  1


Q ss_pred             CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          371 GETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       371 ~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..++..+..+...|.+.|+.++|.++++.+.++
T Consensus       255 ~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~  287 (306)
T 3dra_A          255 VTSSFALETLAKIYTQQKKYNESRTVYDLLKSK  287 (306)
T ss_dssp             ESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhc
Confidence            236788999999999999999999999999864

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.82  E-value=1.4e-07  Score=82.96  Aligned_cols=166  Identities=12%  Similarity=0.015  Sum_probs=131.5

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH-HHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT-TVI  311 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~-~li  311 (427)
                      +...+..+...+...|++++|...|++..+.... +...+..+...+.+.|++++|...++++....  |+..... ...
T Consensus       116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~  192 (287)
T 3qou_A          116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQ  192 (287)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHH
T ss_pred             chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHH
Confidence            5566777888889999999999999999887533 56788889999999999999999999887653  4443322 223


Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAGLCLHGRT  390 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~  390 (427)
                      ..+.+.++.++|...+++..... +.+...+..+...|...|++++|...|.++.+..... +...+..++..|...|+.
T Consensus       193 ~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~  271 (287)
T 3qou_A          193 IELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTG  271 (287)
T ss_dssp             HHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTT
T ss_pred             HHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCC
Confidence            34667788888999999988874 3367788889999999999999999999998864321 267889999999999999


Q ss_pred             HHHHHHHHHHHH
Q 045814          391 DEAYHLFEEMAQ  402 (427)
Q Consensus       391 ~~A~~~~~~m~~  402 (427)
                      ++|...|++...
T Consensus       272 ~~a~~~~r~al~  283 (287)
T 3qou_A          272 DALASXYRRQLY  283 (287)
T ss_dssp             CHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHH
Confidence            999988887653

>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}

Probab=98.82  E-value=4.2e-08  Score=97.26  Aligned_cols=172  Identities=12%  Similarity=-0.065  Sum_probs=141.4

Q ss_pred             HccCChhHHHHHHHHHh--------hCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc
Q 045814          245 CEKKNFGRVSELLHTMV--------ARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK  316 (427)
Q Consensus       245 ~~~~~~~~a~~~~~~m~--------~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  316 (427)
                      ...|++++|.+.+++..        +.. +.+...+..+...|.+.|++++|...|+++.+.... +...|..+..++..
T Consensus       402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  479 (681)
T 2pzi_A          402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERVGW-RWRLVWYRAVAELL  479 (681)
T ss_dssp             TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred             ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcc-hHHHHHHHHHHHHH
Confidence            77899999999999998        332 335578888999999999999999999999887543 67789999999999


Q ss_pred             cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH
Q 045814          317 MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHL  396 (427)
Q Consensus       317 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~  396 (427)
                      .|++++|...|++..+.... +...+..+..+|.+.|++++ .+.|++..+.+. -+...|..+..+|.+.|++++|.+.
T Consensus       480 ~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~  556 (681)
T 2pzi_A          480 TGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTND-GVISAAFGLARARSAEGDRVGAVRT  556 (681)
T ss_dssp             HTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCC-chHHHHHHHHHHHHHcCCHHHHHHH
Confidence            99999999999999987432 56788899999999999999 999999988643 2678899999999999999999999


Q ss_pred             HHHHHHCCCCCC-HhHHHHHHHHHHhcC
Q 045814          397 FEEMAQKGIFRD-VITYNTLIQGYCKEG  423 (427)
Q Consensus       397 ~~~m~~~g~~p~-~~~~~~li~~~~~~g  423 (427)
                      |++..+.  .|+ ...+..+..++...|
T Consensus       557 ~~~al~l--~P~~~~a~~~~~~~~~~~~  582 (681)
T 2pzi_A          557 LDEVPPT--SRHFTTARLTSAVTLLSGR  582 (681)
T ss_dssp             HHTSCTT--STTHHHHHHHHHHHTC---
T ss_pred             HHhhccc--CcccHHHHHHHHHHHHccC
Confidence            9998874  455 456666666655444

>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A

Probab=98.81  E-value=5.4e-07  Score=76.04  Aligned_cols=179  Identities=8%  Similarity=-0.046  Sum_probs=116.3

Q ss_pred             CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc-----------hhHHHHHhcCChhHHHHHHHHHHHCCCCCCH--HHHH
Q 045814          172 SIKTWNSALLGCIKIDRTDLVWKLYHDLIESG-----------YLIQAFCNDGKVSEGYELLRQVLEDGLVPEN--TAFN  238 (427)
Q Consensus       172 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~  238 (427)
                      +...+..+...+.+.|++++|...|+.+++..           .+..+|.+.|++++|+..|+++.+..+....  ..+.
T Consensus         3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~   82 (225)
T 2yhc_A            3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY   82 (225)
T ss_dssp             CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence            44566677788999999999999999998742           2577889999999999999999976543211  2444


Q ss_pred             HHHHHHHc------------------cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          239 KLISRFCE------------------KKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       239 ~li~~~~~------------------~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                      .+..++..                  .|++++|...|+++.+..+. +...+......          ..+...+     
T Consensus        83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l----------~~~~~~~-----  146 (225)
T 2yhc_A           83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRL----------VFLKDRL-----  146 (225)
T ss_dssp             HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHH----------HHHHHHH-----
T ss_pred             HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHH----------HHHHHHH-----
Confidence            44555543                  34555666666655554211 11111111000          0000000     


Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC
Q 045814          301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG  369 (427)
Q Consensus       301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  369 (427)
                         ......+...|.+.|++++|...|+++.+.....  ....+..+..+|.+.|+.++|.+.++.+...+
T Consensus       147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~  214 (225)
T 2yhc_A          147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS  214 (225)
T ss_dssp             ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred             ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence               0011245667888999999999999998863221  12467788889999999999999999888764

>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}

Probab=98.78  E-value=8.5e-07  Score=74.10  Aligned_cols=82  Identities=10%  Similarity=0.058  Sum_probs=34.8

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCC-CCHhhHHHHHHHHHh----cCC
Q 045814          214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRA-PDNFTYEEVINGLCK----SRK  284 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~-~~~~~~~~ll~~~~~----~~~  284 (427)
                      +.++|+++|++..+.|   +...+..|...|..    .+++++|.+.|++..+.+.. .+...+..|...|..    .++
T Consensus        68 ~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d  144 (212)
T 3rjv_A           68 DYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPED  144 (212)
T ss_dssp             CHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCC
T ss_pred             CHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCC
Confidence            3444444444443332   23344444444443    44455555555554444321 013344444444444    444


Q ss_pred             hHHHHHHHHHHHhC
Q 045814          285 RLEAYRVFNDLKER  298 (427)
Q Consensus       285 ~~~a~~~~~~m~~~  298 (427)
                      +++|...|++..+.
T Consensus       145 ~~~A~~~~~~A~~~  158 (212)
T 3rjv_A          145 DVKASEYFKGSSSL  158 (212)
T ss_dssp             HHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHc
Confidence            44455544444443

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.77  E-value=8.1e-07  Score=74.03  Aligned_cols=129  Identities=11%  Similarity=-0.055  Sum_probs=94.8

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814          235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL  314 (427)
Q Consensus       235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  314 (427)
                      ..+..+...+...|++++|...|++..    .|+...+..+...|.+.|++++|...|++..+.... +...|..+..+|
T Consensus         7 ~~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~-~~~~~~~lg~~~   81 (213)
T 1hh8_A            7 ISLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLY   81 (213)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHH
Confidence            345556677778888888888887663    456777888888888888888888888887766432 566777788888


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCC---------------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLP---------------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p---------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ...|++++|...+++..+.....               ....+..+..+|...|++++|...|+...+.
T Consensus        82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~  150 (213)
T 1hh8_A           82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  150 (213)
T ss_dssp             HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence            88888888888888887753211               1156677777788888888888888887765

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.77  E-value=1.4e-06  Score=76.68  Aligned_cols=164  Identities=9%  Similarity=0.022  Sum_probs=120.3

Q ss_pred             HHHHHHHccCChhHHHHHHHHHhhCCC-CCCH----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHH
Q 045814          239 KLISRFCEKKNFGRVSELLHTMVARNR-APDN----FTYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYT  308 (427)
Q Consensus       239 ~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~  308 (427)
                      ..+..+...|++++|..++++..+... .|+.    ..+..+...+...+++++|...|++..+.... ++    ..+|+
T Consensus        80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~  159 (293)
T 3u3w_A           80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN  159 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence            346677888999999999998877532 2221    13335666777788999999999998874322 22    23688


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC-hhhH
Q 045814          309 TVIHGLCKMGWLGDARKMWFEMIHK-----GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET-TVTY  377 (427)
Q Consensus       309 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~  377 (427)
                      .+...|...|++++|...++++.+.     +..+. ..++..+...|.+.|++++|...+++..+.    +..+. ..+|
T Consensus       160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~  239 (293)
T 3u3w_A          160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY  239 (293)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence            8889999999999999999988742     21222 237788888999999999999999887643    22222 5688


Q ss_pred             HHHHHHHHhcCC-HHHHHHHHHHHHH
Q 045814          378 NTLIAGLCLHGR-TDEAYHLFEEMAQ  402 (427)
Q Consensus       378 ~~li~~~~~~g~-~~~A~~~~~~m~~  402 (427)
                      ..+..+|.+.|+ +++|.+.+++...
T Consensus       240 ~~lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          240 YQRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence            889999999995 6999998887754

>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*

Probab=98.72  E-value=2.7e-07  Score=81.19  Aligned_cols=157  Identities=10%  Similarity=0.045  Sum_probs=114.8

Q ss_pred             HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhH-HHHHHHHHhcCCh
Q 045814          207 QAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTY-EEVINGLCKSRKR  285 (427)
Q Consensus       207 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~-~~ll~~~~~~~~~  285 (427)
                      ..+...|++++|...|++....... +...+..+...+.+.|++++|...+++.....  |+.... ......+.+.++.
T Consensus       125 ~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~~~~~~~l~~~~~~  201 (287)
T 3qou_A          125 MQLMQESNYTDALPLLXDAWQLSNQ-NGEIGLLLAETLIALNRSEDAEAVLXTIPLQD--QDTRYQGLVAQIELLXQAAD  201 (287)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHTTS-CHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGG--CSHHHHHHHHHHHHHHHHTS
T ss_pred             HHHHhCCCHHHHHHHHHHHHHhCCc-chhHHHHHHHHHHHCCCHHHHHHHHHhCchhh--cchHHHHHHHHHHHHhhccc
Confidence            3445566666666666666665443 66788888888999999999999998877663  343322 2223346677788


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      ++|...+++..+.... +...+..+...+...|++++|...+.++.+..... +...+..+...|...|+.++|...+++
T Consensus       202 ~~a~~~l~~al~~~P~-~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~a~~~~r~  280 (287)
T 3qou_A          202 TPEIQQLQQQVAENPE-DAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDALASXYRR  280 (287)
T ss_dssp             CHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred             CccHHHHHHHHhcCCc-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCcHHHHHHH
Confidence            8888888888776543 67788888889999999999999999988874321 256788888889999998888888876


Q ss_pred             HHH
Q 045814          365 MLD  367 (427)
Q Consensus       365 m~~  367 (427)
                      ...
T Consensus       281 al~  283 (287)
T 3qou_A          281 QLY  283 (287)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            543

>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*

Probab=98.69  E-value=1.3e-06  Score=72.64  Aligned_cols=125  Identities=8%  Similarity=-0.068  Sum_probs=99.0

Q ss_pred             hhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814          204 YLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR  283 (427)
Q Consensus       204 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  283 (427)
                      .+...+...|++++|...+++..    .|+...+..+...+...|++++|.+.+++..+.. +.+...+..+...|...|
T Consensus        11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~   85 (213)
T 1hh8_A           11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTE   85 (213)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcc
Confidence            35667778889999988887763    4577888888888888999999999998888764 235677888888888899


Q ss_pred             ChHHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814          284 KRLEAYRVFNDLKERGYVPDT----------------VMYTTVIHGLCKMGWLGDARKMWFEMIHKG  334 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~~~~p~~----------------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  334 (427)
                      ++++|...|++..+.... +.                ..+..+..+|.+.|++++|...+++..+..
T Consensus        86 ~~~~A~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~  151 (213)
T 1hh8_A           86 KYDLAIKDLKEALIQLRG-NQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK  151 (213)
T ss_dssp             CHHHHHHHHHHHHHTTTT-CSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred             cHHHHHHHHHHHHHhCCC-ccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence            999999999888776432 22                567778888888899999999998888763

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.69  E-value=4.7e-05  Score=72.12  Aligned_cols=124  Identities=14%  Similarity=0.079  Sum_probs=81.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK-MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      .|...+..+.+.+..+.|..+|++. +.. ..+...|......-.. .++.+.|..+|+...+.- .-+...+...++..
T Consensus       288 lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e  364 (493)
T 2uy1_A          288 LRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFL  364 (493)
T ss_dssp             HHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence            3444555555667788888888888 321 1233344322222222 236888888888887753 11234455667777


Q ss_pred             hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ...|+.+.|..+|+.+.     .....|...+..-...|+.+.+.++++++..
T Consensus       365 ~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~  412 (493)
T 2uy1_A          365 LRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD  412 (493)
T ss_dssp             HHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence            77888888888888873     2567788888877788888888888877764

>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A

Probab=98.68  E-value=5.3e-06  Score=73.02  Aligned_cols=162  Identities=10%  Similarity=0.021  Sum_probs=118.6

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC----HhhHHHH
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGL-VPEN----TAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PD----NFTYEEV  275 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~----~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l  275 (427)
                      +..+...|++++|...+++...... .|+.    ..+..+...+...+++++|...+++....... ++    ..+++.+
T Consensus        82 i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~l  161 (293)
T 3u3w_A           82 VIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAI  161 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHH
T ss_pred             HHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHH
Confidence            3445667777777777777765322 2221    23445667777788999999999999874332 22    2368899


Q ss_pred             HHHHHhcCChHHHHHHHHHHHh----C-CCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHH
Q 045814          276 INGLCKSRKRLEAYRVFNDLKE----R-GYVPD-TVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPN-EYTYNS  344 (427)
Q Consensus       276 l~~~~~~~~~~~a~~~~~~m~~----~-~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~  344 (427)
                      ...|...|++++|...|+++.+    . +..+. ..+|..+...|.+.|++++|...+++..+.    +..+. ..+|..
T Consensus       162 g~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~  241 (293)
T 3u3w_A          162 ANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQ  241 (293)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence            9999999999999999999874    1 11222 347888999999999999999999988754    22222 567888


Q ss_pred             HHHHHhhcCC-HHHHHHHHHHHHH
Q 045814          345 MIHGYCRIDN-LEEAKRLHKEMLD  367 (427)
Q Consensus       345 li~~~~~~g~-~~~a~~~~~~m~~  367 (427)
                      +..+|.+.|+ +++|.+.+++...
T Consensus       242 lg~~~~~~g~~~~~A~~~~~~Al~  265 (293)
T 3u3w_A          242 RGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhCCcHHHHHHHHHHHHH
Confidence            9999999994 6999999988764

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.66  E-value=3e-06  Score=74.65  Aligned_cols=166  Identities=8%  Similarity=0.036  Sum_probs=110.4

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCH-----hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC---CC--hh
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDN-----FTYEEVINGLCKSRKRLEAYRVFNDLKERGYV---PD--TV  305 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~-----~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~---p~--~~  305 (427)
                      .+...+..+...|++++|.+.+.+..+.....+.     ..+..+...+...|++++|...+++..+....   +.  ..
T Consensus        77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~  156 (293)
T 2qfc_A           77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY  156 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence            3444556667777777777777766654322111     22334555667778888888888887653211   11  34


Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCC-Ch
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHK-GLLPN-----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGE-TT  374 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-~~~p~-----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~  374 (427)
                      +|+.+...|...|++++|...+++..+. ...|+     ..++..+...|...|++++|...+++..+.    +... -.
T Consensus       157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~  236 (293)
T 2qfc_A          157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG  236 (293)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence            7778888888888888888888887632 01112     247778888888899999999888877643    1111 15


Q ss_pred             hhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 045814          375 VTYNTLIAGLCLHGRTDEA-YHLFEEMA  401 (427)
Q Consensus       375 ~~~~~li~~~~~~g~~~~A-~~~~~~m~  401 (427)
                      .+|..+...|.+.|++++| ...+++..
T Consensus       237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al  264 (293)
T 2qfc_A          237 QLYYQRGECLRKLEYEEAEIEDAYKKAS  264 (293)
T ss_dssp             HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence            6778888888899999888 67677654

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.64  E-value=1.5e-06  Score=69.02  Aligned_cols=128  Identities=10%  Similarity=-0.017  Sum_probs=77.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .+..+...+...|++++|...|++..+.... +..++..+...+...|++++|...+++..+.. +.+..++..+..++.
T Consensus        15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~   92 (166)
T 1a17_A           15 ELKTQANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM   92 (166)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence            4455555666666666666666666554322 45566666666677777777777777766653 224556666666777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 045814          351 RIDNLEEAKRLHKEMLDKGYGETTVTYNT--LIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      ..|++++|...+++..+... .+...+..  +...+...|++++|.+.+....
T Consensus        93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            77777777777777665422 13334422  2333556677777777776554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.63  E-value=4.6e-07  Score=74.76  Aligned_cols=133  Identities=13%  Similarity=-0.052  Sum_probs=61.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC--C
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLP--N  338 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p--~  338 (427)
                      .++..+...+...|++++|...+++..+.    +..+ ...++..+...+...|++++|...+++..+.    +..|  .
T Consensus        27 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~  106 (203)
T 3gw4_A           27 GARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLAA  106 (203)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHHH
Confidence            34444444555555555555555444331    1111 1234444555555555555555555554432    1011  1


Q ss_pred             HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          339 EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYG-ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       339 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ...+..+...+...|++++|...+++..+.    +.. .-..++..+...+...|++++|.+.+++..+
T Consensus       107 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~  175 (203)
T 3gw4_A          107 SANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD  175 (203)
T ss_dssp             HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence            223444555555556666666555554422    100 0012345555556666666666666655543

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.60  E-value=3.8e-05  Score=68.38  Aligned_cols=185  Identities=11%  Similarity=0.010  Sum_probs=104.4

Q ss_pred             hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-C-ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChH------
Q 045814          215 VSEGYELLRQVLEDGLVPENTAFNKLISRFCEK-K-NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRL------  286 (427)
Q Consensus       215 ~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~-~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~------  286 (427)
                      ++++++.++.+.....+ +..+|+.-...+... + ++++++++++.+.+...+ |..+|+--.-.+.+.|.++      
T Consensus       105 l~eEL~~~~~~L~~nPK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~L~~dpk-Ny~AW~~R~wvl~~l~~~~~~~~~~  182 (349)
T 3q7a_A          105 LEDELRLMNEFAVQNLK-SYQVWHHRLLLLDRISPQDPVSEIEYIHGSLLPDPK-NYHTWAYLHWLYSHFSTLGRISEAQ  182 (349)
T ss_dssp             HHHHHHHHHHHHHTTCC-CHHHHHHHHHHHHHHCCSCCHHHHHHHHHHTSSCTT-CHHHHHHHHHHHHHHHHTTCCCHHH
T ss_pred             HHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhccccccchhh
Confidence            44444445555444433 444555444444443 4 556666666666655432 4455554444444444444      


Q ss_pred             --HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH--
Q 045814          287 --EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL--  355 (427)
Q Consensus       287 --~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~--  355 (427)
                        ++++.++++.+..+. |...|+.....+.+.++       ++++++.++++...... |...|+-+-..+.+.|..  
T Consensus       183 ~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~~~  260 (349)
T 3q7a_A          183 WGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLPLV  260 (349)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCSG
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCCcc
Confidence              677777777766554 66677766666666665       56777777777766432 566666555555444432  


Q ss_pred             ------------------HHHHHHHHHHHHCC-----CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          356 ------------------EEAKRLHKEMLDKG-----YGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       356 ------------------~~a~~~~~~m~~~~-----~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                                        ........++...+     -.+++..+..|.+.|...|+.++|.++++.+.++
T Consensus       261 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          261 PILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             GGHHHHGGGTC--------------CCCCC-CCCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             cccccccccccccccccchhHHHHHHHHHhcccccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence                              22233333332221     1246777888888888888888899998888654

>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}

Probab=98.60  E-value=4.2e-06  Score=73.68  Aligned_cols=163  Identities=9%  Similarity=-0.010  Sum_probs=119.0

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChhHHHHHHHHHhhCCC---CCC--HhhHHH
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPE-----NTAFNKLISRFCEKKNFGRVSELLHTMVARNR---APD--NFTYEE  274 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~---~~~--~~~~~~  274 (427)
                      .+..+...|++++|.+.+.+........+     ...+..+...+...|++++|...+++..+...   .+.  ..+++.
T Consensus        81 ~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~  160 (293)
T 2qfc_A           81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA  160 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHH
T ss_pred             HHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHH
Confidence            34556777888888888877766433211     12344456677888999999999998876432   112  347889


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHh---CC-CCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHHHHH
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKE---RG-YVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLP-NEYTYN  343 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~---~~-~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~~~~  343 (427)
                      +...|...|++++|...|++..+   .. ..+  ...+|..+...|...|++++|...+++..+..    ... -..+|.
T Consensus       161 lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~  240 (293)
T 2qfc_A          161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY  240 (293)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence            99999999999999999999862   21 111  12588889999999999999999999887542    111 156788


Q ss_pred             HHHHHHhhcCCHHHH-HHHHHHHHH
Q 045814          344 SMIHGYCRIDNLEEA-KRLHKEMLD  367 (427)
Q Consensus       344 ~li~~~~~~g~~~~a-~~~~~~m~~  367 (427)
                      .+..+|.+.|++++| ...+++...
T Consensus       241 ~lg~~y~~~g~~~~Ai~~~~~~Al~  265 (293)
T 2qfc_A          241 QRGECLRKLEYEEAEIEDAYKKASF  265 (293)
T ss_dssp             HHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCcHHHHHHHHHHHHH
Confidence            899999999999999 777877653

>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B

Probab=98.58  E-value=8.2e-05  Score=70.46  Aligned_cols=320  Identities=10%  Similarity=-0.005  Sum_probs=188.7

Q ss_pred             CChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCC-hHHHHHHHHh----cCCCC-CHHhHHHHHHHHH----hcCC
Q 045814           84 NNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARA-FKVAMDFLDS----TGFSP-NPNSLELYIQCLC----ESGL  153 (427)
Q Consensus        84 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~----~~~~~-~~~~~~~li~~~~----~~~~  153 (427)
                      ++.+.+..+|+.....   .|+...|...+....+.+. .+.+...|+.    +|..| +...|...+..+.    ..++
T Consensus        28 ~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~  104 (493)
T 2uy1_A           28 KDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTR  104 (493)
T ss_dssp             TCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHH
T ss_pred             CCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHH
Confidence            7899999999998663   5799999999998887763 3444555553    45443 6678888887654    3467


Q ss_pred             hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHc-------------CChhHHHHHHHHHHhc----ch-hHHHHHh--cC
Q 045814          154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKI-------------DRTDLVWKLYHDLIES----GY-LIQAFCN--DG  213 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-------------~~~~~a~~~~~~~~~~----~~-l~~~~~~--~g  213 (427)
                      .+.+.++|++.......--...|......-...             +.+..|..+++.+...    .. +-..|+.  .+
T Consensus       105 ~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~  184 (493)
T 2uy1_A          105 IEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEME  184 (493)
T ss_dssp             HHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhc
Confidence            889999999998742221112222222211111             1222333334333321    00 1111221  12


Q ss_pred             C---------hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          214 K---------VSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       214 ~---------~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      +         .+.+..+|+++..... .+...|...+..+.+.|+.+.|..++++....   |.......   .|....+
T Consensus       185 ~~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~---~y~~~~e  257 (493)
T 2uy1_A          185 NGMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSL---YYGLVMD  257 (493)
T ss_dssp             CTTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHH---HHHHHTT
T ss_pred             CCccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHH---HHHhhcc
Confidence            1         2346678888877543 35778888888888899999999999999887   33322111   2222222


Q ss_pred             hHHHHHHHHHHHhCC---------C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh-
Q 045814          285 RLEAYRVFNDLKERG---------Y---VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR-  351 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~---------~---~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~-  351 (427)
                      .++.   ++.+.+.-         .   ......|...+....+.+..+.|..+|+++ .. ...+...|......-.. 
T Consensus       258 ~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~i~~A~lE~~~  332 (493)
T 2uy1_A          258 EEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVFIYCAFIEYYA  332 (493)
T ss_dssp             CTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHHHHHHHHHHHH
T ss_pred             hhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHHHHHHHHHHHH
Confidence            2222   23322110         0   011245666677777788899999999999 32 12233344322222222 


Q ss_pred             cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814          352 IDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK  424 (427)
Q Consensus       352 ~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  424 (427)
                      .++.+.|..+|+...+.- +-++..|...++...+.|+.+.|..+|+++.+     ....|...++--...|+
T Consensus       333 ~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~k-----~~~lw~~~~~fE~~~G~  399 (493)
T 2uy1_A          333 TGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLEK-----TSRMWDSMIEYEFMVGS  399 (493)
T ss_dssp             HCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSCC-----BHHHHHHHHHHHHHHSC
T ss_pred             CCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----HHHHHHHHHHHHHHCCC
Confidence            336999999999998752 22455677788888889999999999888631     34555555554444443

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.58  E-value=3.2e-06  Score=63.79  Aligned_cols=119  Identities=12%  Similarity=0.034  Sum_probs=72.9

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG  383 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  383 (427)
                      ...+..+...+...|++++|...+++..... +.+...+..+...+...|++++|.+.++...+.. +.+...+..+...
T Consensus        12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~   89 (131)
T 2vyi_A           12 AERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLA   89 (131)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHH
Confidence            3455555666666666666666666666542 2245556666666666677777777766666542 2245566666667


Q ss_pred             HHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          384 LCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       384 ~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                      |...|++++|.+.|++..+... .+...+..+...+.+.|++
T Consensus        90 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~  130 (131)
T 2vyi_A           90 LSSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLREA  130 (131)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTTC
T ss_pred             HHHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhcC
Confidence            7777777777777776666422 2455666666666666665

>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A

Probab=98.57  E-value=2.7e-06  Score=67.44  Aligned_cols=129  Identities=8%  Similarity=-0.012  Sum_probs=95.1

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814          235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL  314 (427)
Q Consensus       235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  314 (427)
                      ..+..+...+...|++++|...+++..+... .+..++..+...+...|++++|...+++..+.... +...|..+..++
T Consensus        14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~   91 (166)
T 1a17_A           14 EELKTQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASN   91 (166)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHHHHHHH
Confidence            4566677778888888888888888777642 25677788888888888888888888888776432 566788888888


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCCHHHHHH--HHHHHhhcCCHHHHHHHHHHHH
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLPNEYTYNS--MIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~--li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      ...|++++|...++++.+.... +...+..  ....+...|++++|...+....
T Consensus        92 ~~~~~~~~A~~~~~~a~~~~p~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~  144 (166)
T 1a17_A           92 MALGKFRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDEHKR  144 (166)
T ss_dssp             HHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence            8888999999888888876322 3444433  3334667788888888887654

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.56  E-value=4.1e-06  Score=62.55  Aligned_cols=97  Identities=13%  Similarity=0.189  Sum_probs=51.6

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL  384 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  384 (427)
                      ..|..+...+...|++++|..+++++.+.. +.+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            344445555555555555555555555442 1234445555555555555666655555555432 22445555555556


Q ss_pred             HhcCCHHHHHHHHHHHHHC
Q 045814          385 CLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       385 ~~~g~~~~A~~~~~~m~~~  403 (427)
                      ...|++++|.+.++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            6666666666666655543

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.56  E-value=7.1e-07  Score=72.05  Aligned_cols=121  Identities=8%  Similarity=0.015  Sum_probs=63.8

Q ss_pred             HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH-HHccCCH--H
Q 045814          245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG-LCKMGWL--G  321 (427)
Q Consensus       245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~--~  321 (427)
                      ...|++++|...+++..+... .+...+..+...|...|++++|...|++..+.... +...+..+..+ +...|++  +
T Consensus        21 ~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~l~~~~~~~~~~   98 (177)
T 2e2e_A           21 ASQQNPEAQLQALQDKIRANP-QNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGE-NAELYAALATVLYYQASQHMTA   98 (177)
T ss_dssp             C-----CCCCHHHHHHHHHCC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCCCH
T ss_pred             hhccCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCCcchH
Confidence            344556666666665555432 24455566666666666666666666665544322 34445555555 4455665  6


Q ss_pred             HHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          322 DARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       322 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +|...++++.+... .+...+..+...|...|++++|...|+...+.
T Consensus        99 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~  144 (177)
T 2e2e_A           99 QTRAMIDKALALDS-NEITALMLLASDAFMQANYAQAIELWQKVMDL  144 (177)
T ss_dssp             HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHhCC-CcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence            66666666655431 13445555555566666666666666665554

>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}

Probab=98.55  E-value=1.1e-06  Score=72.51  Aligned_cols=157  Identities=13%  Similarity=0.002  Sum_probs=113.9

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCC
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRK  284 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~  284 (427)
                      ...|++++|.+.++.+... ......++..+...+...|++++|...+++..+.    +..+ ...++..+...|...|+
T Consensus         3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~   81 (203)
T 3gw4_A            3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN   81 (203)
T ss_dssp             ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred             cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence            4567888888855554432 2235678888999999999999999999987762    2222 34578888889999999


Q ss_pred             hHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHhhcC
Q 045814          285 RLEAYRVFNDLKER----GYVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG---LLPN--EYTYNSMIHGYCRID  353 (427)
Q Consensus       285 ~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~---~~p~--~~~~~~li~~~~~~g  353 (427)
                      +++|...+++..+.    +-.+  ....+..+...+...|++++|...+++.....   -.+.  ..++..+...+...|
T Consensus        82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g  161 (203)
T 3gw4_A           82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK  161 (203)
T ss_dssp             HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence            99999999987543    2111  23467788889999999999999999887431   1111  234677888899999


Q ss_pred             CHHHHHHHHHHHHH
Q 045814          354 NLEEAKRLHKEMLD  367 (427)
Q Consensus       354 ~~~~a~~~~~~m~~  367 (427)
                      ++++|.+.+++..+
T Consensus       162 ~~~~A~~~~~~al~  175 (203)
T 3gw4_A          162 NLLEAQQHWLRARD  175 (203)
T ss_dssp             CHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHH
Confidence            99999999988764

>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A

Probab=98.55  E-value=3.8e-06  Score=62.76  Aligned_cols=97  Identities=13%  Similarity=0.133  Sum_probs=50.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+...|++++|...|+++.+... .+..++..+...+...|++++|..+++++.+.. +.+..++..+...|
T Consensus        10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~   87 (125)
T 1na0_A           10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDP-NNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY   87 (125)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCc-CcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence            3444445555555555555555555544322 134445555555555555555555555555442 12344555555555


Q ss_pred             hhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~  368 (427)
                      ...|++++|...++++.+.
T Consensus        88 ~~~~~~~~A~~~~~~~~~~  106 (125)
T 1na0_A           88 YKQGDYDEAIEYYQKALEL  106 (125)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHhcCHHHHHHHHHHHHHh
Confidence            5556666666665555543

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.55  E-value=2.6e-06  Score=64.47  Aligned_cols=93  Identities=16%  Similarity=0.092  Sum_probs=37.8

Q ss_pred             HHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814          273 EEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI  352 (427)
Q Consensus       273 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  352 (427)
                      ......|.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+.+. .+...|..+..+|...
T Consensus        17 ~~~G~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~   94 (126)
T 4gco_A           17 KNKGNEYFKKGDYPTAMRHYNEAVKRDPE-NAILYSNRAACLTKLMEFQRALDDCDTCIRLDS-KFIKGYIRKAACLVAM   94 (126)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhh-hhhHHHHHHHHHHHHC
Confidence            33344444444444444444444333221 333444444444444444444444444443321 1233344444444444


Q ss_pred             CCHHHHHHHHHHHHH
Q 045814          353 DNLEEAKRLHKEMLD  367 (427)
Q Consensus       353 g~~~~a~~~~~~m~~  367 (427)
                      |++++|.+.|++..+
T Consensus        95 ~~~~~A~~~~~~al~  109 (126)
T 4gco_A           95 REWSKAQRAYEDALQ  109 (126)
T ss_dssp             TCHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHHHH
Confidence            444444444444443

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.53  E-value=3e-06  Score=64.32  Aligned_cols=94  Identities=14%  Similarity=0.042  Sum_probs=38.8

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .+..+...+.+.|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus        18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~   95 (133)
T 2lni_A           18 MVKNKGNECFQKGDYPQAMKHYTEAIKRNPK-DAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAALE   95 (133)
T ss_dssp             HHHHHHHHHHHTTCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHHH
Confidence            3344444444444444444444444433211 33334444444444444444444444444332 112333444444444


Q ss_pred             hcCCHHHHHHHHHHHH
Q 045814          351 RIDNLEEAKRLHKEML  366 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~  366 (427)
                      ..|++++|.+.+++..
T Consensus        96 ~~~~~~~A~~~~~~~~  111 (133)
T 2lni_A           96 AMKDYTKAMDVYQKAL  111 (133)
T ss_dssp             HTTCHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHHHHHH
Confidence            4444444444444443

>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}

Probab=98.52  E-value=3.5e-06  Score=63.73  Aligned_cols=107  Identities=12%  Similarity=0.078  Sum_probs=86.1

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814          235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGL  314 (427)
Q Consensus       235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  314 (427)
                      ..+......|.+.|++++|++.|++.++... .+...|..+..+|.+.|++++|+..|++..+.... +...|..+..++
T Consensus        14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~   91 (126)
T 4gco_A           14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRDP-ENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACL   91 (126)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHH
Confidence            4677778888999999999999998887753 36778888889999999999999999998877543 677888899999


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCC-HHHHHHH
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLPN-EYTYNSM  345 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l  345 (427)
                      ...|++++|...|++..+..  |+ ......+
T Consensus        92 ~~~~~~~~A~~~~~~al~l~--P~~~~a~~~l  121 (126)
T 4gco_A           92 VAMREWSKAQRAYEDALQVD--PSNEEAREGV  121 (126)
T ss_dssp             HHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHC--cCCHHHHHHH
Confidence            99999999999999988863  43 4444433

>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}

Probab=98.52  E-value=8.6e-07  Score=71.57  Aligned_cols=123  Identities=5%  Similarity=0.077  Sum_probs=100.0

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH-HHhcCCh--
Q 045814          209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVING-LCKSRKR--  285 (427)
Q Consensus       209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~-~~~~~~~--  285 (427)
                      +...|++++|...+++....... +...+..+...|...|++++|...|++..+... .+...+..+... +...|++  
T Consensus        20 ~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~l~~~~~~~~~   97 (177)
T 2e2e_A           20 FASQQNPEAQLQALQDKIRANPQ-NSEQWALLGEYYLWQNDYSNSLLAYRQALQLRG-ENAELYAALATVLYYQASQHMT   97 (177)
T ss_dssp             CC-----CCCCHHHHHHHHHCCS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTCCC
T ss_pred             hhhccCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcCCcch
Confidence            45678889999999988876543 778899999999999999999999999888743 356778888888 7789998  


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG  334 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~  334 (427)
                      ++|...|+++.+.... +...+..+...|...|++++|...++++.+..
T Consensus        98 ~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~  145 (177)
T 2e2e_A           98 AQTRAMIDKALALDSN-EITALMLLASDAFMQANYAQAIELWQKVMDLN  145 (177)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence            9999999999887543 56788889999999999999999999998874

>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1

Probab=98.50  E-value=3.6e-06  Score=63.52  Aligned_cols=117  Identities=14%  Similarity=0.024  Sum_probs=64.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...|
T Consensus        13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~   90 (131)
T 2vyi_A           13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPA-NAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLAL   90 (131)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHH
Confidence            34445555555566666666666655544221 44455555566666666666666666665542 12344555556666


Q ss_pred             hhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 045814          350 CRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGR  389 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  389 (427)
                      ...|++++|...+++..+... .+...+..+..++...|+
T Consensus        91 ~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~  129 (131)
T 2vyi_A           91 SSLNKHVEAVAYYKKALELDP-DNETYKSNLKIAELKLRE  129 (131)
T ss_dssp             HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHTT
T ss_pred             HHhCCHHHHHHHHHHHHhcCc-cchHHHHHHHHHHHHHhc
Confidence            666666666666666655421 244555555555555554

>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}

Probab=98.50  E-value=3.9e-06  Score=63.62  Aligned_cols=120  Identities=12%  Similarity=0.033  Sum_probs=99.1

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      .+...|..+...+.+.|++++|...+++..+.. +.+..++..+..+|...|++++|...+++..+.. +.+...+..+.
T Consensus        14 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la   91 (133)
T 2lni_A           14 DLALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKA   91 (133)
T ss_dssp             CHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHH
Confidence            356688889999999999999999999998864 2367788899999999999999999999998863 23678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCC
Q 045814          382 AGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGK  424 (427)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~  424 (427)
                      ..|...|++++|.+.|++..+.... +...+..+...+.+.|+
T Consensus        92 ~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~  133 (133)
T 2lni_A           92 AALEAMKDYTKAMDVYQKALDLDSS-CKEAADGYQRCMMAQYN  133 (133)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHCGG-GTHHHHHHHHHHHHHTC
T ss_pred             HHHHHHhhHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHhcC
Confidence            9999999999999999999875322 34667777777776653

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.50  E-value=1.7e-06  Score=74.48  Aligned_cols=197  Identities=11%  Similarity=-0.077  Sum_probs=136.5

Q ss_pred             hcCChhHHHHHHHHHHHCCCCCCHHHHHHH-------HHHHHccCChhHHHHHHHHHhhCCCCCCH--------------
Q 045814          211 NDGKVSEGYELLRQVLEDGLVPENTAFNKL-------ISRFCEKKNFGRVSELLHTMVARNRAPDN--------------  269 (427)
Q Consensus       211 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~~~~~~~--------------  269 (427)
                      ..++...|.+.|.+.....+. ....|..+       ...+...++..+++..+..-..  +.|+.              
T Consensus        18 ~~~d~~~A~~~F~~a~~~dP~-~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~   94 (282)
T 4f3v_A           18 LPMSEARSLDLFTEITNYDES-ACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDI   94 (282)
T ss_dssp             TTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCC
T ss_pred             cCCCHHHHHHHHHHHHHhChh-hhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCccccc
Confidence            578888888888888876554 56677766       3445554455555555544433  22211              


Q ss_pred             --------hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC--H
Q 045814          270 --------FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN--E  339 (427)
Q Consensus       270 --------~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~  339 (427)
                              ...-.....+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|.  .
T Consensus        95 ~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~  171 (282)
T 4f3v_A           95 TYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAG  171 (282)
T ss_dssp             EEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHH
T ss_pred             ccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHH
Confidence                    123345667888999999999999887654  443355566668889999999999998654432 111  2


Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHHHHH
Q 045814          340 YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITYNTL  415 (427)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l  415 (427)
                      ..+..+..++...|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...  .|+...+..|
T Consensus       172 ~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL  247 (282)
T 4f3v_A          172 AAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL  247 (282)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence            3677778899999999999999999885433243  345667777888999999999999999986  4554444333

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.47  E-value=2.2e-06  Score=67.00  Aligned_cols=96  Identities=13%  Similarity=-0.078  Sum_probs=52.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+.+.|++++|...|++....... +...|..+..+|...|++++|...|++...... .+...+..+..+|
T Consensus        22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~   99 (148)
T 2vgx_A           22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECL   99 (148)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHH
Confidence            34445555555566666666666655544322 444555555555556666666666665555421 1344455555555


Q ss_pred             hhcCCHHHHHHHHHHHHH
Q 045814          350 CRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~  367 (427)
                      ...|++++|...|+...+
T Consensus       100 ~~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          100 LQXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HHTTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHH
Confidence            556666666665555554

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.47  E-value=6.3e-06  Score=64.49  Aligned_cols=96  Identities=11%  Similarity=-0.032  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      .+..+...+.+.|++++|...|+++..... -+...|..+..+|...|++++|...|++..+... -+...|..+..+|.
T Consensus        38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P-~~~~~~~~lg~~~~  115 (151)
T 3gyz_A           38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYDF-YNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGK-NDYTPVFHTGQCQL  115 (151)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS-SCCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCC-CCcHHHHHHHHHHH
Confidence            455555666666666666666666666532 2455666666666666666666666666665432 24556666666666


Q ss_pred             hcCCHHHHHHHHHHHHHC
Q 045814          386 LHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       386 ~~g~~~~A~~~~~~m~~~  403 (427)
                      ..|++++|.+.|++..+.
T Consensus       116 ~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          116 RLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666666654

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.46  E-value=3.8e-06  Score=75.59  Aligned_cols=124  Identities=9%  Similarity=-0.073  Sum_probs=66.1

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--------------HhhHHHHHHHHHhcCChHHHHHHHHHHHhC
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--------------NFTYEEVINGLCKSRKRLEAYRVFNDLKER  298 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~  298 (427)
                      +...+..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|...|++..+.
T Consensus       146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~  225 (336)
T 1p5q_A          146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL  225 (336)
T ss_dssp             HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence            455677777777778888888888877776543211              244445555555555555555555555444


Q ss_pred             CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814          299 GYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       299 ~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  358 (427)
                      ... +...|..+..+|...|++++|...|+++.+... -+...+..+..++...|+.++|
T Consensus       226 ~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          226 DSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             CTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCC-cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            322 344444455555555555555555555544321 1333444444444444444444

>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A

Probab=98.46  E-value=3.7e-06  Score=75.66  Aligned_cols=121  Identities=11%  Similarity=-0.057  Sum_probs=55.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCC--------------hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPD--------------TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL  336 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~--------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  336 (427)
                      .+..+...|.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..+++..+... 
T Consensus       149 ~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-  227 (336)
T 1p5q_A          149 IVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELDS-  227 (336)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-
Confidence            444444445555555555555555444322110              24444455555555555555555555544421 


Q ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      .+...|..+..+|...|++++|...|++..+... -+...+..+..++...|+.++|
T Consensus       228 ~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a  283 (336)
T 1p5q_A          228 NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYP-NNKAAKTQLAVCQQRIRRQLAR  283 (336)
T ss_dssp             TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            1344444444555555555555555555444321 1334444444445555555444

>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}

Probab=98.45  E-value=4.9e-06  Score=71.63  Aligned_cols=129  Identities=6%  Similarity=-0.101  Sum_probs=79.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHH
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--DTVMYTTVIHGL  314 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~  314 (427)
                      .-.+...+...|++++|.++|+.+...+  |+......+...+.+.+++++|+..|+...... .|  ....+..+..++
T Consensus       105 ~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~~LG~al  181 (282)
T 4f3v_A          105 TMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGVAHGVAA  181 (282)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHHHHHHHH
Confidence            3344556666777777777777666543  332244445556777777777777776544321 11  123556667777


Q ss_pred             HccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          315 CKMGWLGDARKMWFEMIHKGLLPN--EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       315 ~~~g~~~~a~~~~~~m~~~~~~p~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .+.|++++|+..|++.......|.  .........++.+.|+.++|..+|+++...
T Consensus       182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~  237 (282)
T 4f3v_A          182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT  237 (282)
T ss_dssp             HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            777777777777777764332243  234455556667777777777777777765

>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A

Probab=98.45  E-value=6.4e-06  Score=64.42  Aligned_cols=97  Identities=9%  Similarity=-0.071  Sum_probs=71.0

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+.+.|++++|...|+++.+.... +...|..+..+|...|++++|...|++..+.... +...|..+..+|
T Consensus        37 ~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~-~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~-~~~~~~~lg~~~  114 (151)
T 3gyz_A           37 DDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFY-NVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKN-DYTPVFHTGQCQ  114 (151)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSS-CCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHH
Confidence            45666677777788888888888877766443 5667777777777888888888888877776422 456677777777


Q ss_pred             hhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~  368 (427)
                      ...|++++|...|+...+.
T Consensus       115 ~~lg~~~eA~~~~~~al~l  133 (151)
T 3gyz_A          115 LRLKAPLKAKECFELVIQH  133 (151)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            8888888888888877765

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.42  E-value=9.7e-07  Score=77.31  Aligned_cols=187  Identities=6%  Similarity=-0.030  Sum_probs=117.9

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...+...|++++|...|++....... +...|..+..++.+.|++++|...+++..+... .+...+..+..+|...|++
T Consensus        11 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~   88 (281)
T 2c2l_A           11 GNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQLEMESY   88 (281)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence            34455666666777777766664433 677888899999999999999999999887743 3567888899999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEM  365 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m  365 (427)
                      ++|...|++..+.... +...+...+....+.   .++.. +..........+......+ ..+ ..|+.++|.+.++..
T Consensus        89 ~~A~~~~~~al~l~p~-~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l-~~l-~~~~~~~A~~~~~~a  161 (281)
T 2c2l_A           89 DEAIANLQRAYSLAKE-QRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYL-TRL-IAAERERELEECQRN  161 (281)
T ss_dssp             HHHHHHHHHHHHHHHH-TTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHH-HHH-HHHHHHHHHTTTSGG
T ss_pred             HHHHHHHHHHHHhCcc-chhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHH-HHH-HHHHHHHHHHHHHhh
Confidence            9999999988765321 111222222222211   11111 2223333334444443333 222 368889999888887


Q ss_pred             HHCCCCCCh-hhHHHHHHHHHhc-CCHHHHHHHHHHHHHC
Q 045814          366 LDKGYGETT-VTYNTLIAGLCLH-GRTDEAYHLFEEMAQK  403 (427)
Q Consensus       366 ~~~~~~p~~-~~~~~li~~~~~~-g~~~~A~~~~~~m~~~  403 (427)
                      .+.  .|+. .....+-..+.+. +.+++|.++|.+..+.
T Consensus       162 l~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~  199 (281)
T 2c2l_A          162 HEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK  199 (281)
T ss_dssp             GTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred             hcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence            765  3443 3334444444444 6788899999887653

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.42  E-value=2.2e-06  Score=74.98  Aligned_cols=96  Identities=11%  Similarity=-0.003  Sum_probs=71.8

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG  182 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  182 (427)
                      +...+..+...+.+.|++++|...+++ ....| +...|..+..+|.+.|++++|...+++..+.... +...+..+..+
T Consensus         3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~   81 (281)
T 2c2l_A            3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLGQC   81 (281)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            455677777788888888888888876 23334 5677888888888888888888888888776433 56777777777


Q ss_pred             HHHcCChhHHHHHHHHHHh
Q 045814          183 CIKIDRTDLVWKLYHDLIE  201 (427)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~  201 (427)
                      +...|++++|...|+...+
T Consensus        82 ~~~~g~~~~A~~~~~~al~  100 (281)
T 2c2l_A           82 QLEMESYDEAIANLQRAYS  100 (281)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            8888888777777776654

>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*

Probab=98.38  E-value=3.9e-06  Score=65.56  Aligned_cols=95  Identities=8%  Similarity=-0.106  Sum_probs=42.7

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      .+..+...+.+.|++++|...|++...... .+...|..+..+|...|++++|...|++...... .+...|..+..+|.
T Consensus        23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~  100 (148)
T 2vgx_A           23 QLYSLAFNQYQSGXYEDAHXVFQALCVLDH-YDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDI-XEPRFPFHAAECLL  100 (148)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCChHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHH
Confidence            333344444444555555555544444321 1334444444444444555555555544444321 13344444444444


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 045814          386 LHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       386 ~~g~~~~A~~~~~~m~~  402 (427)
                      ..|++++|.+.|++..+
T Consensus       101 ~~g~~~~A~~~~~~al~  117 (148)
T 2vgx_A          101 QXGELAEAESGLFLAQE  117 (148)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHH
Confidence            55555555555444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.37  E-value=2.1e-05  Score=73.19  Aligned_cols=165  Identities=9%  Similarity=-0.085  Sum_probs=85.1

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCC-CCH----hhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC-hhh
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRA-PDN----FTYEEVINGLCKSRKRLEAYRVFNDLKE----RGYVPD-TVM  306 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~-~~~  306 (427)
                      +..+...|...|++++|.+.+..+...-.. ++.    .+.+.+-..+...|++++|..++.....    .+..+. ..+
T Consensus        58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~  137 (434)
T 4b4t_Q           58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL  137 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence            455666666666666666666655432111 111    1222223333345666666666665532    121222 335


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHc--C--CCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCCCC--hh
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHK--G--LLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYGET--TV  375 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~--~--~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~--~~  375 (427)
                      +..+...|...|++++|..+++++...  +  -.+ ...++..++..|...|++++|..+++.....    +.++.  ..
T Consensus       138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~  217 (434)
T 4b4t_Q          138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE  217 (434)
T ss_dssp             HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred             HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence            556666666667777776666665433  1  111 1235566666666677777776666655432    11111  23


Q ss_pred             hHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          376 TYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      .+..+...+...|++++|.+.|.+..
T Consensus       218 ~~~~~g~~~~~~~~y~~A~~~~~~a~  243 (434)
T 4b4t_Q          218 LDLMSGILHCEDKDYKTAFSYFFESF  243 (434)
T ss_dssp             HHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence            44555555566666666666655543

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.32  E-value=2e-05  Score=59.34  Aligned_cols=95  Identities=12%  Similarity=0.043  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      .|..+...+.+.|++++|...|++..+.. +.+...|..+..+|.+.|++++|...+++..+... .+...|..+..+|.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            34444445555555555555555555442 11344555555555555555555555555554421 13445555555555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 045814          386 LHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       386 ~~g~~~~A~~~~~~m~~  402 (427)
                      ..|++++|.+.|++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            55555555555555544

>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*

Probab=98.31  E-value=0.00025  Score=63.05  Aligned_cols=32  Identities=6%  Similarity=0.321  Sum_probs=21.0

Q ss_pred             CCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          337 PNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       337 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ++...+..+...|...|+.++|.++++.+.+.
T Consensus       300 ~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~~  331 (349)
T 3q7a_A          300 PVPLALEYLADSFIEQNRVDDAAKVFEKLSSE  331 (349)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh
Confidence            45566666666777777777777777776543

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.30  E-value=1.5e-05  Score=60.37  Aligned_cols=96  Identities=11%  Similarity=0.048  Sum_probs=48.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY--GET----TVTYNT  379 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~  379 (427)
                      ++..+...+.+.|++++|+..|++..+... -+..+|..+..+|...|++++|.+.+++.++...  .++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p-~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDP-SNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            344444555555555555555555554421 1344455555555555555555555555543210  000    124455


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHH
Q 045814          380 LIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      +..++...|++++|++.|++...
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            55556666666666666666554

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.29  E-value=3.4e-05  Score=56.76  Aligned_cols=93  Identities=19%  Similarity=0.170  Sum_probs=38.4

Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH  387 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  387 (427)
                      ..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..+|...
T Consensus         8 ~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~   85 (118)
T 1elw_A            8 KEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFL   85 (118)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHH
Confidence            333344444444444444444444332 1123333444444444444444444444444331 11233444444444444


Q ss_pred             CCHHHHHHHHHHHHH
Q 045814          388 GRTDEAYHLFEEMAQ  402 (427)
Q Consensus       388 g~~~~A~~~~~~m~~  402 (427)
                      |++++|.+.+++..+
T Consensus        86 ~~~~~A~~~~~~~~~  100 (118)
T 1elw_A           86 NRFEEAKRTYEEGLK  100 (118)
T ss_dssp             TCHHHHHHHHHHHHT
T ss_pred             hhHHHHHHHHHHHHH
Confidence            444444444444443

>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1

Probab=98.29  E-value=4e-05  Score=56.37  Aligned_cols=110  Identities=15%  Similarity=0.059  Sum_probs=90.4

Q ss_pred             CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814          268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH  347 (427)
Q Consensus       268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  347 (427)
                      ....+..+...+...|++++|...|++..+.... +...+..+...+...|++++|...+++..+... .+...+..+..
T Consensus         3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~   80 (118)
T 1elw_A            3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAA   80 (118)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCc-ccHHHHHHHHH
Confidence            3457788889999999999999999999876433 677888899999999999999999999988742 35778888999


Q ss_pred             HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814          348 GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL  380 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  380 (427)
                      ++...|++++|.+.++...+.+. .+...+..+
T Consensus        81 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l  112 (118)
T 1elw_A           81 ALEFLNRFEEAKRTYEEGLKHEA-NNPQLKEGL  112 (118)
T ss_dssp             HHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHH
T ss_pred             HHHHHhhHHHHHHHHHHHHHcCC-CCHHHHHHH
Confidence            99999999999999999987632 234444443

>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}

Probab=98.29  E-value=1.5e-05  Score=60.37  Aligned_cols=96  Identities=9%  Similarity=0.072  Sum_probs=54.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC--CCC----HHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL--LPN----EYTYNS  344 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~  344 (427)
                      .+..+...+.+.|++++|+..|++..+.... +...|..+..+|.+.|++++|+..+++..+...  .++    ..+|..
T Consensus        10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~-~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~   88 (127)
T 4gcn_A           10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPS-NITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR   88 (127)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence            4445555666666666666666666554332 445566666666666666666666666554311  111    124555


Q ss_pred             HHHHHhhcCCHHHHHHHHHHHHH
Q 045814          345 MIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       345 li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +..++...|++++|.+.|++..+
T Consensus        89 lg~~~~~~~~~~~A~~~~~kal~  111 (127)
T 4gcn_A           89 AGNAFQKQNDLSLAVQWFHRSLS  111 (127)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHh
Confidence            55666666677777777666655

>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}

Probab=98.28  E-value=2e-05  Score=59.30  Aligned_cols=95  Identities=12%  Similarity=0.016  Sum_probs=52.0

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++..+... .+...+..+..++.
T Consensus         6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~   83 (126)
T 3upv_A            6 EARLEGKEYFTKSDWPNAVKAYTEMIKRAPE-DARGYSNRAAALAKLMSFPEAIADCNKAIEKDP-NFVRAYIRKATAQI   83 (126)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHH
Confidence            3444455555555666666555555544322 445555555556666666666666666555431 13445555555666


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 045814          351 RIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~  367 (427)
                      ..|++++|...|++..+
T Consensus        84 ~~~~~~~A~~~~~~al~  100 (126)
T 3upv_A           84 AVKEYASALETLDAART  100 (126)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhCHHHHHHHHHHHHH
Confidence            66666666666665554

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.26  E-value=1.8e-05  Score=65.06  Aligned_cols=131  Identities=13%  Similarity=-0.062  Sum_probs=75.7

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-C--------------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCC
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV-P--------------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGL  335 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p--------------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~  335 (427)
                      .+..+...+.+.|++++|...|++..+.... |              ....|..+..+|.+.|++++|...+++..+.. 
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-  118 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-  118 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-
Confidence            3444445555555555555555555543211 0              02566667777777788888888777777663 


Q ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHC
Q 045814          336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAY-HLFEEMAQK  403 (427)
Q Consensus       336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~-~~~~~m~~~  403 (427)
                      +.+...+..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|...
T Consensus       119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~  186 (198)
T 2fbn_A          119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK  186 (198)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred             cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            2356667777777778888888888887777652 224566666666666666666655 445555443

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.26  E-value=1.7e-05  Score=59.66  Aligned_cols=97  Identities=11%  Similarity=0.104  Sum_probs=49.0

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGY--GET----TVTYNT  379 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~----~~~~~~  379 (427)
                      .|..+...+...|++++|...+++..... +.+...+..+...|...|++++|...+++..+...  .++    ..+|..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444445555555555555555554442 12344445555555555555555555555544311  111    444555


Q ss_pred             HHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          380 LIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       380 li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +...|...|++++|.+.|++..+.
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~~  108 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLAE  108 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHHh
Confidence            555566666666666666655553

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.25  E-value=2.2e-05  Score=57.23  Aligned_cols=96  Identities=10%  Similarity=-0.009  Sum_probs=50.9

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE--TTVTYNTLIAG  383 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~  383 (427)
                      .+..+...+...|++++|...+++..+... .+...+..+...+...|++++|...+++..+.. +.  +...+..+...
T Consensus         8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~   85 (112)
T 2kck_A            8 EYYLEGVLQYDAGNYTESIDLFEKAIQLDP-EESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA   85 (112)
T ss_dssp             GGGGHHHHHHSSCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence            444455555555555555555555554421 234445555555555556666665555555442 11  34555555555


Q ss_pred             HHhc-CCHHHHHHHHHHHHHC
Q 045814          384 LCLH-GRTDEAYHLFEEMAQK  403 (427)
Q Consensus       384 ~~~~-g~~~~A~~~~~~m~~~  403 (427)
                      |... |++++|.+.+++....
T Consensus        86 ~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           86 LRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHhCCHHHHHHHHHHHhhc
Confidence            5566 6666666666555544

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.24  E-value=1.9e-05  Score=61.01  Aligned_cols=97  Identities=9%  Similarity=-0.063  Sum_probs=59.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|...|++...... .+...+..+..+|
T Consensus        19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~   96 (142)
T 2xcb_A           19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHY-DARYFLGLGACRQSLGLYEQALQSYSYGALMDI-NEPRFPFHAAECH   96 (142)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCcHHHHHHHHHH
Confidence            34445555666667777777777666655432 455666666666666677777766666666532 2344555666666


Q ss_pred             hhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~  368 (427)
                      ...|++++|...|+...+.
T Consensus        97 ~~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           97 LQLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            6666666666666666553

>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}

Probab=98.24  E-value=1.9e-05  Score=57.52  Aligned_cols=98  Identities=10%  Similarity=-0.039  Sum_probs=61.6

Q ss_pred             HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCC--CHHHHHHHH
Q 045814          269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLP--NEYTYNSMI  346 (427)
Q Consensus       269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p--~~~~~~~li  346 (427)
                      ...+..+...+...|++++|...|++..+.... +...|..+...+...|++++|...+++..+.. +.  +...+..+.
T Consensus         6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~   83 (112)
T 2kck_A            6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPE-ESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKA   83 (112)
T ss_dssp             TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHH
Confidence            344555666666666666666666666554322 45566666666667777777777777766652 12  355666666


Q ss_pred             HHHhhc-CCHHHHHHHHHHHHHC
Q 045814          347 HGYCRI-DNLEEAKRLHKEMLDK  368 (427)
Q Consensus       347 ~~~~~~-g~~~~a~~~~~~m~~~  368 (427)
                      .+|... |++++|.+.++...+.
T Consensus        84 ~~~~~~~~~~~~A~~~~~~~~~~  106 (112)
T 2kck_A           84 DALRYIEGKEVEAEIAEARAKLE  106 (112)
T ss_dssp             HHHTTCSSCSHHHHHHHHHHGGG
T ss_pred             HHHHHHhCCHHHHHHHHHHHhhc
Confidence            667777 7777777777776654

>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1

Probab=98.24  E-value=2.2e-05  Score=64.52  Aligned_cols=130  Identities=9%  Similarity=-0.001  Sum_probs=85.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC---------------HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPD---------------NFTYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~---------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                      .+..+...+...|++++|...|++.........               ...+..+..+|.+.|++++|...+++..+...
T Consensus        40 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p  119 (198)
T 2fbn_A           40 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKIDK  119 (198)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc
Confidence            455556666667777777777776665432111               25777788888888888888888888877643


Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH-HHHHHHHH
Q 045814          301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK-RLHKEMLD  367 (427)
Q Consensus       301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~-~~~~~m~~  367 (427)
                      . +...+..+..+|...|++++|...|++..+... -+...+..+..++...++.+++. ..+..+..
T Consensus       120 ~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~  185 (198)
T 2fbn_A          120 N-NVKALYKLGVANMYFGFLEEAKENLYKAASLNP-NNLDIRNSYELCVNKLKEARKKDKLTFGGMFD  185 (198)
T ss_dssp             T-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred             c-cHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            2 567788888888888999999999888887632 24566777777777776666665 44555443

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.23  E-value=4.8e-05  Score=57.99  Aligned_cols=95  Identities=17%  Similarity=0.002  Sum_probs=42.1

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+...|++++|...|++..+.... +...|..+..++...|++++|...+++..+... .+...+..+..+|
T Consensus        10 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~   87 (137)
T 3q49_B           10 QELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLGQCQ   87 (137)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcC-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHH
Confidence            34444444444444444444444444433221 333444444444444444444444444444321 1233444444444


Q ss_pred             hhcCCHHHHHHHHHHHH
Q 045814          350 CRIDNLEEAKRLHKEML  366 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~  366 (427)
                      ...|++++|...|+...
T Consensus        88 ~~~~~~~~A~~~~~~a~  104 (137)
T 3q49_B           88 LEMESYDEAIANLQRAY  104 (137)
T ss_dssp             HHTTCHHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHHHH
Confidence            44444444444444443

>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=98.21  E-value=8.2e-05  Score=69.15  Aligned_cols=194  Identities=12%  Similarity=-0.009  Sum_probs=108.9

Q ss_pred             HHHHHHcCChHHHHHHHHhc-CCCCC------------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcC-CCcC
Q 045814          113 FDSLVEARAFKVAMDFLDST-GFSPN------------------PNSLELYIQCLCESGLIEEAFCAFSKLKEMG-VFGS  172 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~~-~~~~~------------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g-~~p~  172 (427)
                      ...+.+.|++++|.+.+.+. ...|+                  ..++..+...|...|++++|.+.+..+...- ..++
T Consensus        11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~   90 (434)
T 4b4t_Q           11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK   90 (434)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence            34556777777777777652 11111                  0135566677777777777777776655321 0111


Q ss_pred             Hh----hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHH
Q 045814          173 IK----TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE----DGLVP-ENTAFNKLISR  243 (427)
Q Consensus       173 ~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~-~~~~~~~li~~  243 (427)
                      ..    +.+.+...                          +...|+.+.|.++++....    .+..+ -..++..+...
T Consensus        91 ~~~~~~~~~~l~~~--------------------------~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~  144 (434)
T 4b4t_Q           91 SKTVKVLKTLIEKF--------------------------EQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATL  144 (434)
T ss_dssp             HHHHHHHHHHHHHH--------------------------CSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHH--------------------------HhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence            11    11111122                          2233445555554444332    22222 24466777788


Q ss_pred             HHccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCCC--hhhHHHHHH
Q 045814          244 FCEKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVPD--TVMYTTVIH  312 (427)
Q Consensus       244 ~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p~--~~~~~~li~  312 (427)
                      +...|++++|..++++....    +..+ ...++..++..|...|++++|..++++....    +..+.  ...+..+..
T Consensus       145 ~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~  224 (434)
T 4b4t_Q          145 HYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGI  224 (434)
T ss_dssp             HHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred             HHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHH
Confidence            88888888888888766542    1111 2346777778888888888888888776432    11111  235556666


Q ss_pred             HHHccCCHHHHHHHHHHHHH
Q 045814          313 GLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~  332 (427)
                      .+...|++++|...+.+..+
T Consensus       225 ~~~~~~~y~~A~~~~~~a~~  244 (434)
T 4b4t_Q          225 LHCEDKDYKTAFSYFFESFE  244 (434)
T ss_dssp             HTTSSSCHHHHHHHHHHHHH
T ss_pred             HHHHHHhHHHHHHHHHHHHH
Confidence            67777888888777766643

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.21  E-value=8.9e-06  Score=63.83  Aligned_cols=132  Identities=14%  Similarity=0.075  Sum_probs=76.1

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCC-CC----hhhHHHHHHHHHccCCHHHHHHHHHHHHHcC----CCC-CHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYV-PD----TVMYTTVIHGLCKMGWLGDARKMWFEMIHKG----LLP-NEY  340 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~-p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~----~~p-~~~  340 (427)
                      ++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++..+..    ..+ ...
T Consensus        11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~   90 (164)
T 3ro3_A           11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ   90 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence            4455555555666666666666555432100 01    1355556666666677777777666655431    000 133


Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHC----CCC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDK----GYG-ETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~-p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ++..+...+...|++++|.+.+++..+.    +.. .....+..+...|...|++++|.+.+++..+
T Consensus        91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            4556666777777777777777766532    111 1134566677777788888888888877654

>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*

Probab=98.20  E-value=4.2e-05  Score=58.32  Aligned_cols=100  Identities=13%  Similarity=-0.018  Sum_probs=87.8

Q ss_pred             CChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          302 PDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      .+...|..+...+...|++++|...|++...... .+...+..+..+|...|++++|...++...+... .+...|..+.
T Consensus         7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~   84 (137)
T 3q49_B            7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   84 (137)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCc-CcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCc-hhHHHHHHHH
Confidence            3677888899999999999999999999988753 3577899999999999999999999999998643 3678899999


Q ss_pred             HHHHhcCCHHHHHHHHHHHHHC
Q 045814          382 AGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .+|...|++++|...|++..+.
T Consensus        85 ~~~~~~~~~~~A~~~~~~a~~~  106 (137)
T 3q49_B           85 QCQLEMESYDEAIANLQRAYSL  106 (137)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhHHHHHHHHHHHHHH
Confidence            9999999999999999998764

>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A

Probab=98.20  E-value=2.3e-05  Score=60.48  Aligned_cols=96  Identities=6%  Similarity=-0.044  Sum_probs=53.4

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLC  315 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  315 (427)
                      .+..+...+.+.|++++|...|++...... .+...|..+..+|.+.|++++|...|++..+.... +...+..+..+|.
T Consensus        20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~   97 (142)
T 2xcb_A           20 QLYALGFNQYQAGKWDDAQKIFQALCMLDH-YDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHL   97 (142)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHH
Confidence            344445555556666666666665555432 24455555555666666666666666665554332 3445555555666


Q ss_pred             ccCCHHHHHHHHHHHHHc
Q 045814          316 KMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       316 ~~g~~~~a~~~~~~m~~~  333 (427)
                      ..|++++|...|++..+.
T Consensus        98 ~~g~~~~A~~~~~~al~~  115 (142)
T 2xcb_A           98 QLGDLDGAESGFYSARAL  115 (142)
T ss_dssp             HTTCHHHHHHHHHHHHHH
T ss_pred             HcCCHHHHHHHHHHHHHh
Confidence            666666666666655543

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.20  E-value=4e-05  Score=60.76  Aligned_cols=99  Identities=6%  Similarity=-0.024  Sum_probs=80.0

Q ss_pred             CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814          268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIH  347 (427)
Q Consensus       268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  347 (427)
                      +...+..+...+.+.|++++|...|++..+.... +...|..+..+|.+.|++++|+..+++..+... -+...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPA-NPIYLSNRAAAYSASGQHEKAAEDAELATVVDP-KYSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence            4567778888888899999999999888776543 677888888888888999999999888887742 25677888888


Q ss_pred             HHhhcCCHHHHHHHHHHHHHC
Q 045814          348 GYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +|...|++++|...|++..+.
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~  108 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEA  108 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHh
Confidence            888889999999888888765

>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}

Probab=98.18  E-value=4.1e-05  Score=60.70  Aligned_cols=100  Identities=8%  Similarity=-0.002  Sum_probs=82.9

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      +...+..+...+.+.|++++|+..|++..+... .+...|..+..+|.+.|++++|+..|++..+.... +...|..+..
T Consensus        10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~   87 (164)
T 3sz7_A           10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAP-ANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL   87 (164)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-cCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence            556788888888899999999999998887743 26778888888999999999999999998877543 5778888888


Q ss_pred             HHHccCCHHHHHHHHHHHHHcC
Q 045814          313 GLCKMGWLGDARKMWFEMIHKG  334 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~  334 (427)
                      +|...|++++|...|++..+..
T Consensus        88 ~~~~~g~~~~A~~~~~~al~~~  109 (164)
T 3sz7_A           88 ARFDMADYKGAKEAYEKGIEAE  109 (164)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHHH
T ss_pred             HHHHccCHHHHHHHHHHHHHhC
Confidence            9999999999999999888763

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.18  E-value=7.8e-05  Score=57.46  Aligned_cols=95  Identities=14%  Similarity=0.092  Sum_probs=46.7

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN----EYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTL  380 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~----~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  380 (427)
                      ..+..+...+...|++++|...|++..+.  .|+    ...+..+..+|...|++++|...+++..+.. +.+...|..+
T Consensus        29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~  105 (148)
T 2dba_A           29 EQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR  105 (148)
T ss_dssp             HHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence            34444444445555555555555554443  222    3344444555555555555555555554432 1134445555


Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..+|...|++++|.+.|++..+
T Consensus       106 a~~~~~~~~~~~A~~~~~~al~  127 (148)
T 2dba_A          106 SQALEKLGRLDQAVLDLQRCVS  127 (148)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHH
Confidence            5555555555555555555554

>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A

Probab=98.16  E-value=2e-05  Score=59.32  Aligned_cols=96  Identities=11%  Similarity=0.045  Sum_probs=42.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC--CC----hhhHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV--PD----TVMYTT  309 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~--p~----~~~~~~  309 (427)
                      .+..+...+...|++++|...+++..... +.+...+..+...|...|++++|...+++..+....  ++    ..++..
T Consensus         6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~   84 (131)
T 1elr_A            6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR   84 (131)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence            34444444455555555555555444432 113344444444444555555555555444332110  01    333444


Q ss_pred             HHHHHHccCCHHHHHHHHHHHHH
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      +..++...|++++|...++++.+
T Consensus        85 la~~~~~~~~~~~A~~~~~~~~~  107 (131)
T 1elr_A           85 IGNSYFKEEKYKDAIHFYNKSLA  107 (131)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHhccHHHHHHHHHHHHH
Confidence            44444444444444444444444

>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.16  E-value=0.0001  Score=56.73  Aligned_cols=98  Identities=11%  Similarity=-0.020  Sum_probs=49.3

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD----NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT  308 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~  308 (427)
                      +...+..+...+...|++++|...|++..+..  |+    ...+..+...|...|++++|...+++..+.... +...+.
T Consensus        27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~  103 (148)
T 2dba_A           27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY  103 (148)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred             HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence            34445555555555555666655555555442  22    344444555555555555555555555443221 334444


Q ss_pred             HHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          309 TVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       309 ~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .+..++...|++++|...+++..+.
T Consensus       104 ~~a~~~~~~~~~~~A~~~~~~al~~  128 (148)
T 2dba_A          104 RRSQALEKLGRLDQAVLDLQRCVSL  128 (148)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence            4555555555555555555555443

>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}

Probab=98.14  E-value=1.6e-05  Score=62.32  Aligned_cols=133  Identities=11%  Similarity=0.024  Sum_probs=93.0

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHhhCCCC-CC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC----CCC-Ch
Q 045814          235 TAFNKLISRFCEKKNFGRVSELLHTMVARNRA-PD----NFTYEEVINGLCKSRKRLEAYRVFNDLKERG----YVP-DT  304 (427)
Q Consensus       235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~----~~p-~~  304 (427)
                      .++..+...+...|++++|...+++..+.... ++    ..++..+...+...|++++|...+++..+..    ..+ ..
T Consensus        10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~   89 (164)
T 3ro3_A           10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA   89 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence            35667777777888888888888776653211 11    1467777888888888888888888875431    111 13


Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLP-NEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      ..+..+...+...|++++|...+++..+.    +..+ ...++..+...|...|++++|.+.+++..+
T Consensus        90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~  157 (164)
T 3ro3_A           90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE  157 (164)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence            46777778888889999999988887644    1111 134567778888899999999999888764

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.09  E-value=0.0046  Score=54.68  Aligned_cols=227  Identities=11%  Similarity=0.031  Sum_probs=146.8

Q ss_pred             hcCCh-hHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC---hhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHH
Q 045814          150 ESGLI-EEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR---TDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQV  225 (427)
Q Consensus       150 ~~~~~-~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~---~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~  225 (427)
                      +.|.+ ++|+++++.+...++. +..+|+.=-..+...+.   .+..                   ...+++++.+++.+
T Consensus        41 ~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~-------------------~~~l~~EL~~~~~~  100 (331)
T 3dss_A           41 QAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEES-------------------AALVKAELGFLESC  100 (331)
T ss_dssp             HTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHH-------------------HHHHHHHHHHHHHH
T ss_pred             HcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhh-------------------hHHHHHHHHHHHHH
Confidence            44444 4788888888876444 44555542222221111   0100                   11145677777777


Q ss_pred             HHCCCCCCHHHHHHHHHHHHccC--ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHhCCCCC
Q 045814          226 LEDGLVPENTAFNKLISRFCEKK--NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK-RLEAYRVFNDLKERGYVP  302 (427)
Q Consensus       226 ~~~~~~~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~p  302 (427)
                      ....++ +..+|+.-...+...+  ++++++.+++.+.+.... |...|+--.-.+...|. ++++++.++++.+..+. 
T Consensus       101 L~~~PK-ny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-  177 (331)
T 3dss_A          101 LRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-  177 (331)
T ss_dssp             HHHCTT-CHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-
T ss_pred             HHhCCC-CHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-
Confidence            776554 6777777666677766  478999999998887643 66777777777777787 58889999998887665 


Q ss_pred             ChhhHHHHHHHHHcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-----------CCHHH
Q 045814          303 DTVMYTTVIHGLCKM--------------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI-----------DNLEE  357 (427)
Q Consensus       303 ~~~~~~~li~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~  357 (427)
                      |...|+.....+...              +.++++++.+++....... |...|+-+-..+.+.           +.+++
T Consensus       178 N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~  256 (331)
T 3dss_A          178 NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQS  256 (331)
T ss_dssp             CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHH
Confidence            777777666655544              4578888888888877433 666666444444333           45788


Q ss_pred             HHHHHHHHHHCCCCCChhhHHHHHH-----HHHhcCCHHHHHHHHHHHHHC
Q 045814          358 AKRLHKEMLDKGYGETTVTYNTLIA-----GLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       358 a~~~~~~m~~~~~~p~~~~~~~li~-----~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +.+.++++.+.  .||. .|..+-.     +....|..+++...+.++.+.
T Consensus       257 el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~  304 (331)
T 3dss_A          257 ELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV  304 (331)
T ss_dssp             HHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence            88999988875  4553 3432222     222467788899999998874

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.06  E-value=1.7e-05  Score=74.91  Aligned_cols=121  Identities=8%  Similarity=-0.045  Sum_probs=93.0

Q ss_pred             hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC
Q 045814          205 LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK  284 (427)
Q Consensus       205 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~  284 (427)
                      +...+.+.|++++|.+.+++..+.... +..+|..+..+|.+.|++++|.+.+++..+... .+...+..+..+|.+.|+
T Consensus        12 lg~~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~   89 (477)
T 1wao_1           12 QANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGK   89 (477)
T ss_dssp             SSSSTTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCC
Confidence            445667788899999999988876443 678899999999999999999999999988753 356788889999999999


Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHH--HHccCCHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHG--LCKMGWLGDARKMWF  328 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~a~~~~~  328 (427)
                      +++|.+.|++..+.... +...+..+..+  +.+.|++++|...++
T Consensus        90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            99999999998876432 34455555555  778899999999988

>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3

Probab=98.05  E-value=1.6e-05  Score=75.15  Aligned_cols=116  Identities=10%  Similarity=-0.018  Sum_probs=50.2

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK  359 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  359 (427)
                      .+.|++++|.+.|++..+.... +..+|..+..+|.+.|++++|...+++..+... -+..++..+..+|...|++++|.
T Consensus        17 ~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p-~~~~~~~~lg~~~~~~g~~~eA~   94 (477)
T 1wao_1           17 FKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKFRAAL   94 (477)
T ss_dssp             TTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHHHHTCHHHHH
T ss_pred             HHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHH
Confidence            3444555555555544443221 344444455555555555555555555544421 13344444555555555555555


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 045814          360 RLHKEMLDKGYGETTVTYNTLIAG--LCLHGRTDEAYHLFE  398 (427)
Q Consensus       360 ~~~~~m~~~~~~p~~~~~~~li~~--~~~~g~~~~A~~~~~  398 (427)
                      +.+++..+... -+...+..+..+  +.+.|++++|.+.++
T Consensus        95 ~~~~~al~~~p-~~~~~~~~l~~~~~~~~~g~~~~A~~~~~  134 (477)
T 1wao_1           95 RDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDE  134 (477)
T ss_dssp             HHHHHHHHHST-TCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred             HHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            55555444311 122233333333  444455555555544

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.04  E-value=4.9e-05  Score=56.85  Aligned_cols=88  Identities=10%  Similarity=-0.045  Sum_probs=34.7

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD  391 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  391 (427)
                      ..+.+.|++++|...+++..+... .+...+..+..++...|++++|...|++..+.... +...+..+..+|...|+++
T Consensus        25 ~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~~~~g~~~  102 (121)
T 1hxi_A           25 LSMLKLANLAEAALAFEAVCQKEP-EREEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSHTNEHNAN  102 (121)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHH
Confidence            333344444444444444443321 12333333444444444444444444444433111 2333344444444444444


Q ss_pred             HHHHHHHHHH
Q 045814          392 EAYHLFEEMA  401 (427)
Q Consensus       392 ~A~~~~~~m~  401 (427)
                      +|...+++..
T Consensus       103 ~A~~~~~~al  112 (121)
T 1hxi_A          103 AALASLRAWL  112 (121)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            4444444433

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=98.04  E-value=6.1e-05  Score=70.77  Aligned_cols=88  Identities=10%  Similarity=-0.020  Sum_probs=43.0

Q ss_pred             hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814          305 VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL  384 (427)
Q Consensus       305 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  384 (427)
                      ..|..+..+|.+.|++++|+..++++.+... .+...|..+..+|...|++++|...|++..+... -+...+..+..++
T Consensus       318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~  395 (457)
T 1kt0_A          318 AAFLNLAMCYLKLREYTKAVECCDKALGLDS-ANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQ  395 (457)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence            3445555555555555555555555555421 1344555555555555555555555555554321 1334455555555


Q ss_pred             HhcCCHHHHH
Q 045814          385 CLHGRTDEAY  394 (427)
Q Consensus       385 ~~~g~~~~A~  394 (427)
                      .+.|+.++|.
T Consensus       396 ~~~~~~~~a~  405 (457)
T 1kt0_A          396 KKAKEHNERD  405 (457)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence            5555554443

>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*

Probab=98.03  E-value=0.0012  Score=58.40  Aligned_cols=193  Identities=9%  Similarity=-0.044  Sum_probs=138.9

Q ss_pred             HhcCChh-HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 045814          210 CNDGKVS-EGYELLRQVLEDGLVPENTAFNKLISRFCEKKN----------FGRVSELLHTMVARNRAPDNFTYEEVING  278 (427)
Q Consensus       210 ~~~g~~~-~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  278 (427)
                      .+.|.++ +|+++++.+....+. +..+|+.--..+...+.          +++++.+++.+....++ +..+|+.-.-.
T Consensus        40 ~~~~e~s~eaL~~t~~~L~~nP~-~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~PK-ny~aW~hR~wl  117 (331)
T 3dss_A           40 RQAGELDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWL  117 (331)
T ss_dssp             HHTTCCSHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHcCCCCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            3445544 788888888876544 44455543333333222          67888999998887543 66778777777


Q ss_pred             HHhcC--ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc---
Q 045814          279 LCKSR--KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW-LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI---  352 (427)
Q Consensus       279 ~~~~~--~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~-~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---  352 (427)
                      +.+.+  .+++++.+++++.+...+ |..+|+.-.-.+...|. ++++++.++++.+..+. |...|+.....+...   
T Consensus       118 L~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~  195 (331)
T 3dss_A          118 LSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQ  195 (331)
T ss_dssp             HHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCC
T ss_pred             HhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhc
Confidence            77777  489999999999988665 78888888877888888 59999999999988654 777787766555544   


Q ss_pred             -----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCH
Q 045814          353 -----------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH-----------GRTDEAYHLFEEMAQKGIFRDV  409 (427)
Q Consensus       353 -----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-----------g~~~~A~~~~~~m~~~g~~p~~  409 (427)
                                 +.++++.+.++........ |...|+-+-..+.+.           +.++++++.++++.+.  .||.
T Consensus       196 ~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~--~pd~  271 (331)
T 3dss_A          196 PDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQEL--EPEN  271 (331)
T ss_dssp             C------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             cccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhh--Cccc
Confidence                       4578899999998876433 677777555555544           4578999999999885  5554

>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1

Probab=98.03  E-value=5.3e-05  Score=56.65  Aligned_cols=97  Identities=10%  Similarity=-0.146  Sum_probs=83.8

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      ..+..+...+.+.|++++|...|++..+.... +...|..+..++...|++++|+..+++..+.... +...+..+..+|
T Consensus        18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~la~~~   95 (121)
T 1hxi_A           18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDPK-DIAVHAALAVSH   95 (121)
T ss_dssp             SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            35666778889999999999999999887543 7778889999999999999999999999987432 567888899999


Q ss_pred             hhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~  368 (427)
                      ...|++++|...+++..+.
T Consensus        96 ~~~g~~~~A~~~~~~al~~  114 (121)
T 1hxi_A           96 TNEHNANAALASLRAWLLS  114 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHC-
T ss_pred             HHcCCHHHHHHHHHHHHHh
Confidence            9999999999999998865

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=98.03  E-value=0.00017  Score=54.15  Aligned_cols=91  Identities=10%  Similarity=-0.079  Sum_probs=41.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCCh---hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHH
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDT---VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN---EYTYNSMIHG  348 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~  348 (427)
                      +...+.+.|++++|...|+.+.+.... +.   ..+..+..++.+.|++++|...++++.+.... +   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence            334444555555555555555443211 11   23444444455555555555555554443211 1   2334444444


Q ss_pred             HhhcCCHHHHHHHHHHHHH
Q 045814          349 YCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       349 ~~~~g~~~~a~~~~~~m~~  367 (427)
                      +...|++++|...|+.+.+
T Consensus        86 ~~~~g~~~~A~~~~~~~~~  104 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVAT  104 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHH
Confidence            4455555555555554444

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=98.00  E-value=0.00049  Score=66.26  Aligned_cols=171  Identities=6%  Similarity=-0.087  Sum_probs=104.0

Q ss_pred             hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC----------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-
Q 045814          250 FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK----------RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-  318 (427)
Q Consensus       250 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~----------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-  318 (427)
                      .++|++.++++...+.. +..+|+.--..+...|+          ++++.+.++.+.+...+ +..+|+.-.-.+.+.| 
T Consensus        45 ~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~  122 (567)
T 1dce_A           45 DESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPE  122 (567)
T ss_dssp             SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSS
T ss_pred             CHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHccc
Confidence            34556666666655322 33445444444444444          67777777777666544 5666666666666666 


Q ss_pred             -CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC-CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc---------
Q 045814          319 -WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID-NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLH---------  387 (427)
Q Consensus       319 -~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---------  387 (427)
                       +++++++.++++.+.... |..+|+.-...+.+.| .++++.+.++++.+.... |...|+.....+.+.         
T Consensus       123 ~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~  200 (567)
T 1dce_A          123 PNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQ  200 (567)
T ss_dssp             CCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSC
T ss_pred             ccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhccccccccc
Confidence             557777777777776543 5666666666666666 677777777777665433 566666666655542         


Q ss_pred             -----CCHHHHHHHHHHHHHCCCCCCHhHHHHHHHHHHhcCCC
Q 045814          388 -----GRTDEAYHLFEEMAQKGIFRDVITYNTLIQGYCKEGKI  425 (427)
Q Consensus       388 -----g~~~~A~~~~~~m~~~g~~p~~~~~~~li~~~~~~g~~  425 (427)
                           +.++++++.+++....... |...|..+-..+.+.|+.
T Consensus       201 ~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~  242 (567)
T 1dce_A          201 GRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPH  242 (567)
T ss_dssp             CSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCC
T ss_pred             ccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCc
Confidence                 4467777777777764322 456666665555555543

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=98.00  E-value=1.6e-05  Score=59.04  Aligned_cols=85  Identities=8%  Similarity=-0.014  Sum_probs=41.3

Q ss_pred             cCChHHHHHHHHHHHhCCC--CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHH
Q 045814          282 SRKRLEAYRVFNDLKERGY--VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAK  359 (427)
Q Consensus       282 ~~~~~~a~~~~~~m~~~~~--~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  359 (427)
                      .|++++|+..|++..+.+.  +-+...+..+..+|...|++++|...+++..+.... +..++..+..++...|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            3555555555555555421  112334555555555555555555555555554321 3444555555555555555555


Q ss_pred             HHHHHHHH
Q 045814          360 RLHKEMLD  367 (427)
Q Consensus       360 ~~~~~m~~  367 (427)
                      ..+++..+
T Consensus        82 ~~~~~al~   89 (117)
T 3k9i_A           82 ELLLKIIA   89 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555544

>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}

Probab=97.96  E-value=0.00042  Score=51.93  Aligned_cols=92  Identities=14%  Similarity=0.125  Sum_probs=44.0

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCH---HHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHHH
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNE---YTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET---TVTYNTLIAG  383 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~---~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~---~~~~~~li~~  383 (427)
                      +...+...|++++|...++++.+.... +.   ..+..+..++...|++++|...++...+.... +   ...+..+..+
T Consensus         8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~~   85 (129)
T 2xev_A            8 VAFDALKNGKYDDASQLFLSFLELYPN-GVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGLS   85 (129)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCSS-STTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHHH
T ss_pred             HHHHHHHhCCHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHHH
Confidence            334444555555555555555543211 11   24444445555555555555555555543211 1   3334445555


Q ss_pred             HHhcCCHHHHHHHHHHHHHC
Q 045814          384 LCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       384 ~~~~g~~~~A~~~~~~m~~~  403 (427)
                      |...|++++|.+.|+++.+.
T Consensus        86 ~~~~g~~~~A~~~~~~~~~~  105 (129)
T 2xev_A           86 QYGEGKNTEAQQTLQQVATQ  105 (129)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHHH
Confidence            55555555555555555543

>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A

Probab=97.95  E-value=9.5e-05  Score=69.44  Aligned_cols=132  Identities=8%  Similarity=-0.029  Sum_probs=99.3

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC--------------HhhHHHHHHHHHhcCChHHHHHHHHHHHhCC
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD--------------NFTYEEVINGLCKSRKRLEAYRVFNDLKERG  299 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~--------------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~  299 (427)
                      ...|..+...+.+.|++++|...|++..+......              ...|..+..+|.+.|++++|+..|++..+..
T Consensus       268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~  347 (457)
T 1kt0_A          268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD  347 (457)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence            44677777788888888888888888776532211              4778888899999999999999999998875


Q ss_pred             CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH-HHHHHHH
Q 045814          300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR-LHKEMLD  367 (427)
Q Consensus       300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~-~~~~m~~  367 (427)
                      .. +...|..+..+|...|++++|...|+++.+... -+...+..+..++.+.++.+++.+ ++..|..
T Consensus       348 p~-~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~f~  414 (457)
T 1kt0_A          348 SA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQISMCQKKAKEHNERDRRIYANMFK  414 (457)
T ss_dssp             TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHHHHHHHHHC--
T ss_pred             Cc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            43 677888899999999999999999999987632 245677888888888888877664 4555543

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.95  E-value=3.4e-05  Score=72.63  Aligned_cols=126  Identities=6%  Similarity=-0.086  Sum_probs=91.8

Q ss_pred             HHHhcCChHHHHHHHHHHHhC-----CC-CC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCC-HHHHH
Q 045814          278 GLCKSRKRLEAYRVFNDLKER-----GY-VP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----G-LLPN-EYTYN  343 (427)
Q Consensus       278 ~~~~~~~~~~a~~~~~~m~~~-----~~-~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~~~  343 (427)
                      .+...|++++|+.++++..+.     |. .| ...+++.|..+|...|++++|+.++++..+.     | -.|+ ..+++
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~  397 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM  397 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence            355788999999888887542     21 12 2457888899999999999999988887643     2 1233 45788


Q ss_pred             HHHHHHhhcCCHHHHHHHHHHHHHC-----CCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          344 SMIHGYCRIDNLEEAKRLHKEMLDK-----GYG-ET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       344 ~li~~~~~~g~~~~a~~~~~~m~~~-----~~~-p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .|...|...|++++|+.++++..+.     |.. |+ ..+.+.+-.++...|.+++|..+|+.+++.
T Consensus       398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~  464 (490)
T 3n71_A          398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA  464 (490)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            8889999999999999998877642     321 22 345566677788889999999999998774

>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}

Probab=97.94  E-value=2.6e-05  Score=57.90  Aligned_cols=86  Identities=8%  Similarity=-0.037  Sum_probs=45.4

Q ss_pred             cCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 045814          247 KKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR  324 (427)
Q Consensus       247 ~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  324 (427)
                      .|++++|+..|++..+.+.  +.+...+..+...|.+.|++++|...|++..+.... +...+..+..++.+.|++++|.
T Consensus         3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~   81 (117)
T 3k9i_A            3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV   81 (117)
T ss_dssp             ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred             CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence            3555555555555555431  112345555555666666666666666666554332 3455555666666666666666


Q ss_pred             HHHHHHHHc
Q 045814          325 KMWFEMIHK  333 (427)
Q Consensus       325 ~~~~~m~~~  333 (427)
                      ..+++....
T Consensus        82 ~~~~~al~~   90 (117)
T 3k9i_A           82 ELLLKIIAE   90 (117)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHh
Confidence            666665544

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.92  E-value=0.0002  Score=56.48  Aligned_cols=98  Identities=18%  Similarity=0.135  Sum_probs=55.7

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhC--------CC---------CCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKER--------GY---------VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--------~~---------~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      ..+......+.+.|++++|...|.+..+.        ..         .-+...|..+..+|.+.|++++|+..+++..+
T Consensus        12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~   91 (162)
T 3rkv_A           12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK   91 (162)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence            45566667777777777777777776543        00         00223455555555566666666666666555


Q ss_pred             cCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          333 KGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       333 ~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .. +.+...|..+..+|...|++++|...|+...+.
T Consensus        92 ~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           92 RE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             cC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            43 223445555555566666666666666555553

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.91  E-value=0.00011  Score=66.71  Aligned_cols=90  Identities=11%  Similarity=-0.018  Sum_probs=56.2

Q ss_pred             hhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 045814          304 TVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG  383 (427)
Q Consensus       304 ~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  383 (427)
                      ...|..+..+|.+.|++++|+..+++..+... -+...+..+..+|...|++++|...|++..+... -+...+..+...
T Consensus       273 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~  350 (370)
T 1ihg_A          273 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDP-SNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKV  350 (370)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHH
Confidence            44666666677777777777777777766532 2455666666777777777777777777666421 245555555666


Q ss_pred             HHhcCCHHHHHH
Q 045814          384 LCLHGRTDEAYH  395 (427)
Q Consensus       384 ~~~~g~~~~A~~  395 (427)
                      +...++.+++.+
T Consensus       351 ~~~~~~~~~a~k  362 (370)
T 1ihg_A          351 KQKIKAQKDKEK  362 (370)
T ss_dssp             HHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHH
Confidence            666665555543

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.86  E-value=0.00072  Score=51.71  Aligned_cols=112  Identities=9%  Similarity=-0.111  Sum_probs=69.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHH
Q 045814          283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEA  358 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a  358 (427)
                      +++++|.+.|++..+.|. |+.  .  +...|...+.+++|...|++..+.|   +...+..+-..|..    .+++++|
T Consensus         9 ~d~~~A~~~~~~aa~~g~-~~a--~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A   80 (138)
T 1klx_A            9 KDLKKAIQYYVKACELNE-MFG--C--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA   80 (138)
T ss_dssp             HHHHHHHHHHHHHHHTTC-TTH--H--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred             cCHHHHHHHHHHHHcCCC-Hhh--h--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence            355666666666666652 222  2  4555555556666777777766654   44555566666655    5677777


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 045814          359 KRLHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGI  405 (427)
Q Consensus       359 ~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  405 (427)
                      .+.|++..+.|   +...+..|...|..    .++.++|.+.|++..+.|.
T Consensus        81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~  128 (138)
T 1klx_A           81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  128 (138)
T ss_dssp             HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence            77777776654   55666666666666    6677777777777766653

>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A

Probab=97.85  E-value=0.00016  Score=65.73  Aligned_cols=123  Identities=7%  Similarity=-0.045  Sum_probs=91.6

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhC--------------CC-CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVAR--------------NR-APDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--------------~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                      .+..+...+.+.|++++|.+.|++..+.              .. ..+...|..+..+|.+.|++++|...+++..+...
T Consensus       225 ~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p  304 (370)
T 1ihg_A          225 DLKNIGNTFFKSQNWEMAIKKYTKVLRYVEGSRAAAEDADGAKLQPVALSCVLNIGACKLKMSDWQGAVDSCLEALEIDP  304 (370)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHSCHHHHGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHHHHhhcCccccChHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCc
Confidence            4566666777777777777777766651              01 12346788888899999999999999999988754


Q ss_pred             CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHH
Q 045814          301 VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKR  360 (427)
Q Consensus       301 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~  360 (427)
                      . +...|..+..+|...|++++|...|+++.+... -+...+..+..++...++.+++.+
T Consensus       305 ~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~~~~~~~~~~~a~k  362 (370)
T 1ihg_A          305 S-NTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLKVKQKIKAQKDKEK  362 (370)
T ss_dssp             T-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             h-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            3 677888889999999999999999999988642 255666777777777776666654

>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}

Probab=97.84  E-value=0.00027  Score=55.70  Aligned_cols=100  Identities=9%  Similarity=0.028  Sum_probs=76.2

Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhC--------CC---------CCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVAR--------NR---------APDNFTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--------~~---------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      ....+......+.+.|++++|...|.+....        ..         +.+...|..+..+|.+.|++++|...+++.
T Consensus        10 ~a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~a   89 (162)
T 3rkv_A           10 SVEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEV   89 (162)
T ss_dssp             HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence            3456777778888888888888888877764        10         112356777888888888888888888888


Q ss_pred             HhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          296 KERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       296 ~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .+.... +...|..+..+|...|++++|...|++..+.
T Consensus        90 l~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l  126 (162)
T 3rkv_A           90 LKREET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN  126 (162)
T ss_dssp             HHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HhcCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence            776433 5677888888888888888888888888876

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}

Probab=97.80  E-value=0.00012  Score=68.80  Aligned_cols=132  Identities=8%  Similarity=-0.065  Sum_probs=88.9

Q ss_pred             HHHhcCChhHHHHHHHHHHhcC---CCc----CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHH
Q 045814          147 CLCESGLIEEAFCAFSKLKEMG---VFG----SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGY  219 (427)
Q Consensus       147 ~~~~~~~~~~A~~~~~~m~~~g---~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~  219 (427)
                      .+...|++++|+.++++..+..   +.|    ...+++.|..+|...|++++|..++++.                   +
T Consensus       318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~a-------------------L  378 (490)
T 3n71_A          318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRM-------------------V  378 (490)
T ss_dssp             HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH-------------------H
T ss_pred             HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHH-------------------H
Confidence            3567899999999998776431   111    3467888888888888888888886644                   3


Q ss_pred             HHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh-----CCC-CCCH-hhHHHHHHHHHhcCChHHHHHHH
Q 045814          220 ELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA-----RNR-APDN-FTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       220 ~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~~~-~~~~-~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                      +++++.......-...+++.|...|...|++++|+.++++..+     .|. .|++ .+.+.+-.++...+++++|+.+|
T Consensus       379 ~i~~~~lG~~Hp~~a~~l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~  458 (490)
T 3n71_A          379 DGYMKLYHHNNAQLGMAVMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMY  458 (490)
T ss_dssp             HHHHHHSCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444443333222455788899999999999999988887654     232 2222 34455556666677777777777


Q ss_pred             HHHHh
Q 045814          293 NDLKE  297 (427)
Q Consensus       293 ~~m~~  297 (427)
                      .++.+
T Consensus       459 ~~~~~  463 (490)
T 3n71_A          459 HKMRE  463 (490)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=97.77  E-value=0.00097  Score=64.19  Aligned_cols=174  Identities=10%  Similarity=-0.069  Sum_probs=132.8

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----------hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcC
Q 045814          214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKN----------FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSR  283 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~  283 (427)
                      ..++|++.++++...... +..+|+.--.++...|+          ++++.+.++.+.+...+ +..+|+.-.-.+.+.+
T Consensus        44 ~~eeal~~~~~~l~~nP~-~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~  121 (567)
T 1dce_A           44 LDESVLELTSQILGANPD-FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLP  121 (567)
T ss_dssp             CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCS
T ss_pred             CCHHHHHHHHHHHHHCch-hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcc
Confidence            346778888888876554 55667666566666666          89999999999887644 6678887777888888


Q ss_pred             --ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc--------
Q 045814          284 --KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG-WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI--------  352 (427)
Q Consensus       284 --~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~--------  352 (427)
                        +++++.+.++++.+.... +..+|+.-...+.+.| ..+++++.++++.+.... |...|+.....+.+.        
T Consensus       122 ~~~~~~el~~~~k~l~~d~~-N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~  199 (567)
T 1dce_A          122 EPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP  199 (567)
T ss_dssp             SCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred             cccHHHHHHHHHHHHhhccc-cccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence              669999999999988665 7888888888888888 889999999999887544 677787766665553        


Q ss_pred             ------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 045814          353 ------DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDE  392 (427)
Q Consensus       353 ------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~  392 (427)
                            +.++++.+.++........ |...|.-+-..+.+.++.++
T Consensus       200 ~~~~~~~~~~eel~~~~~ai~~~P~-~~saW~y~~~ll~~~~~~~~  244 (567)
T 1dce_A          200 QGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGRAEPHDV  244 (567)
T ss_dssp             CCSSCHHHHHHHHHHHHHHHHHCSS-CSHHHHHHHHHHSCCCCCSC
T ss_pred             cccccHHHHHHHHHHHHHHHhhCCC-CccHHHHHHHHHhcCCCccc
Confidence                  5578999999988876433 67788887777777776443

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.75  E-value=0.0001  Score=66.22  Aligned_cols=149  Identities=7%  Similarity=-0.015  Sum_probs=80.0

Q ss_pred             HHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHH
Q 045814          234 NTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHG  313 (427)
Q Consensus       234 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  313 (427)
                      ...+..+...+.+.|++++|...|++.....  |+...       +...++.+++...+.          ...|..+..+
T Consensus       179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~  239 (338)
T 2if4_A          179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAAC  239 (338)
T ss_dssp             HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHH
Confidence            4566777777788888888888888877652  33221       222333333332221          1367778888


Q ss_pred             HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCHHH
Q 045814          314 LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAG-LCLHGRTDE  392 (427)
Q Consensus       314 ~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~  392 (427)
                      |.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|++..+... -+...+..+... ....+..++
T Consensus       240 ~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p-~~~~a~~~L~~l~~~~~~~~~~  317 (338)
T 2if4_A          240 LIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAP-DDKAIRRELRALAEQEKALYQK  317 (338)
T ss_dssp             HHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred             HHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHHHHHHHH
Confidence            888999999999999888764 23567888888889999999999999988876521 134445555444 234566777


Q ss_pred             HHHHHHHHHHC
Q 045814          393 AYHLFEEMAQK  403 (427)
Q Consensus       393 A~~~~~~m~~~  403 (427)
                      +..+|+.|...
T Consensus       318 a~~~~~~~l~~  328 (338)
T 2if4_A          318 QKEMYKGIFKG  328 (338)
T ss_dssp             -----------
T ss_pred             HHHHHHHhhCC
Confidence            88888888754

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.74  E-value=0.00027  Score=54.92  Aligned_cols=94  Identities=14%  Similarity=0.038  Sum_probs=69.5

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-------------HHhHHHHHHHHHhcCChhHHHHHHHHHHhc-----C
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-------------PNSLELYIQCLCESGLIEEAFCAFSKLKEM-----G  168 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-------------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~-----g  168 (427)
                      .+......+.+.|++++|...|++ +.+.|+             ...|+.+..++.+.|++++|+..|++..+.     .
T Consensus        13 ~~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e   92 (159)
T 2hr2_A           13 LALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE   92 (159)
T ss_dssp             HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence            344456667788888888888876 333333             238888999999999999999999998875     1


Q ss_pred             CCc-CHhhH----HHHHHHHHHcCChhHHHHHHHHHHh
Q 045814          169 VFG-SIKTW----NSALLGCIKIDRTDLVWKLYHDLIE  201 (427)
Q Consensus       169 ~~p-~~~~~----~~ll~~~~~~~~~~~a~~~~~~~~~  201 (427)
                      +.| +...|    .....++...|++++|+..|+..++
T Consensus        93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            133 45677    7788888888888888888877665

>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8

Probab=97.73  E-value=0.0012  Score=51.27  Aligned_cols=62  Identities=15%  Similarity=0.161  Sum_probs=36.4

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CCCCC-hhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GYGET-TVTY----NTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-~~~~----~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .|..+..++.+.|++++|...+++.++.     .+.|+ ...|    .....++...|++++|+..|++..+
T Consensus        59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle  130 (159)
T 2hr2_A           59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  130 (159)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence            5555555666666666666666655543     11333 3455    6666666667777777776666654

>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}

Probab=97.72  E-value=0.00011  Score=66.01  Aligned_cols=149  Identities=10%  Similarity=0.009  Sum_probs=82.6

Q ss_pred             HHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHH
Q 045814          198 DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVIN  277 (427)
Q Consensus       198 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~  277 (427)
                      .......+...+.+.|++++|...|++.....  |+..       .+...++.+++...+.          ...|..+..
T Consensus       178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~--p~~~-------~~~~~~~~~~~~~~l~----------~~~~~nla~  238 (338)
T 2if4_A          178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM--GDDF-------MFQLYGKYQDMALAVK----------NPCHLNIAA  238 (338)
T ss_dssp             HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS--CHHH-------HHTCCHHHHHHHHHHH----------THHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh--ccch-------hhhhcccHHHHHHHHH----------HHHHHHHHH
Confidence            33344457788889999999999999988743  3322       1223334444333221          136777888


Q ss_pred             HHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HhhcCCH
Q 045814          278 GLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHG-YCRIDNL  355 (427)
Q Consensus       278 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~-~~~~g~~  355 (427)
                      +|.+.|++++|...+++..+.... +...|..+..+|...|++++|...|++..+.  .|+ ...+..+... ....+..
T Consensus       239 ~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~  315 (338)
T 2if4_A          239 CLIKLKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALY  315 (338)
T ss_dssp             HHHTTTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-------------------------
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHH
Confidence            888999999999999988776432 6678888888999999999999999888765  333 3344444443 2334566


Q ss_pred             HHHHHHHHHHHHC
Q 045814          356 EEAKRLHKEMLDK  368 (427)
Q Consensus       356 ~~a~~~~~~m~~~  368 (427)
                      +++..+|..|...
T Consensus       316 ~~a~~~~~~~l~~  328 (338)
T 2if4_A          316 QKQKEMYKGIFKG  328 (338)
T ss_dssp             -------------
T ss_pred             HHHHHHHHHhhCC
Confidence            7777888877654

>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1

Probab=97.68  E-value=0.0007  Score=51.79  Aligned_cols=109  Identities=8%  Similarity=-0.101  Sum_probs=47.3

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHh----cCChHHHH
Q 045814          214 KVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCK----SRKRLEAY  289 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~----~~~~~~a~  289 (427)
                      ++++|+++|++..+.|.. +  ..  |-..|...+..++|.+.|++..+.|   +...+..+-..|..    .+++++|.
T Consensus        10 d~~~A~~~~~~aa~~g~~-~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~   81 (138)
T 1klx_A           10 DLKKAIQYYVKACELNEM-F--GC--LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   81 (138)
T ss_dssp             HHHHHHHHHHHHHHTTCT-T--HH--HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHcCCCH-h--hh--HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHH
Confidence            344555555555544421 1  11  3333444444444555555444443   23344444444444    44444444


Q ss_pred             HHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHc
Q 045814          290 RVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHK  333 (427)
Q Consensus       290 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~  333 (427)
                      +.|++..+.|   +...+..+...|..    .++.++|...|++..+.
T Consensus        82 ~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~  126 (138)
T 1klx_A           82 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRL  126 (138)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHC
Confidence            4444444432   23333444444443    34444444444444444

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.53  E-value=0.0011  Score=47.97  Aligned_cols=89  Identities=13%  Similarity=0.077  Sum_probs=56.1

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-------hh
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-------TV  375 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-------~~  375 (427)
                      +...+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+..  |+       ..
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~   79 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT--STAEHVAIRSK   79 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC--SSTTSHHHHHH
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCccHHHHHHH
Confidence            44566667777777777777777777777653 2255667777777777777777777777777642  33       33


Q ss_pred             hHHHHHHHHHhcCCHHHHH
Q 045814          376 TYNTLIAGLCLHGRTDEAY  394 (427)
Q Consensus       376 ~~~~li~~~~~~g~~~~A~  394 (427)
                      .+..+..++...|+.+.|.
T Consensus        80 ~~~~~~~~~~~~~~~~~a~   98 (111)
T 2l6j_A           80 LQYRLELAQGAVGSVQIPV   98 (111)
T ss_dssp             HHHHHHHHHHHHHCCCCCS
T ss_pred             HHHHHHHHHHHHHhHhhhH
Confidence            3444444444444444443

>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}

Probab=97.43  E-value=0.00014  Score=52.83  Aligned_cols=65  Identities=22%  Similarity=0.133  Sum_probs=43.3

Q ss_pred             CHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          268 DNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       268 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      +...+..+...+.+.|++++|...|++..+.... +...|..+..++.+.|++++|...+++..+.
T Consensus         3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~   67 (111)
T 2l6j_A            3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY   67 (111)
T ss_dssp             HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred             hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence            3445666666777777777777777777665332 5556666777777777777777777777654

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.41  E-value=0.00087  Score=49.14  Aligned_cols=62  Identities=11%  Similarity=-0.016  Sum_probs=28.2

Q ss_pred             HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          269 NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       269 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      ...+..+...|...|++++|...|++..+.... +...|..+..+|...|++++|...|++..
T Consensus        19 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A           19 MLLRFTLGKTYAEHEQFDAALPHLRAALDFDPT-YSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            334444444444444444444444444443221 23344444444444555555555444444

>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}

Probab=97.38  E-value=0.0015  Score=47.83  Aligned_cols=80  Identities=6%  Similarity=-0.033  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          287 EAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       287 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      +|...|++..+.... +...+..+...|...|++++|...+++..+... .+...+..+..+|...|++++|...|++..
T Consensus         3 ~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al   80 (115)
T 2kat_A            3 AITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDP-TYSVAWKWLGKTLQGQGDRAGARQAWESGL   80 (115)
T ss_dssp             CHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence            456666766665432 566777777777777888888888777776532 245567777777777777777777777766


Q ss_pred             HC
Q 045814          367 DK  368 (427)
Q Consensus       367 ~~  368 (427)
                      +.
T Consensus        81 ~~   82 (115)
T 2kat_A           81 AA   82 (115)
T ss_dssp             HH
T ss_pred             Hh
Confidence            53

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.34  E-value=0.0032  Score=43.44  Aligned_cols=61  Identities=15%  Similarity=0.271  Sum_probs=28.7

Q ss_pred             HHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          341 TYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       341 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .+..+...+...|++++|...+++..+.. +.+...+..+...|...|++++|.+.+++..+
T Consensus        11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~   71 (91)
T 1na3_A           11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE   71 (91)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence            33444444444555555555555444432 11334444455555555555555555555444

>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A

Probab=97.34  E-value=0.0023  Score=44.19  Aligned_cols=25  Identities=12%  Similarity=0.181  Sum_probs=9.7

Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHH
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMI  331 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~  331 (427)
                      +..+...+.+.|++++|...+++..
T Consensus        46 ~~~l~~~~~~~~~~~~A~~~~~~a~   70 (91)
T 1na3_A           46 WYNLGNAYYKQGDYDEAIEYYQKAL   70 (91)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            3333333333344444444433333

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.21  E-value=0.002  Score=45.85  Aligned_cols=64  Identities=16%  Similarity=0.105  Sum_probs=37.0

Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      +...+..+...|.+.|++++|...|++..+.... +...|..+..+|...|++++|.+.|++..+
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3445555666666666666666666666655322 344555566666666666666666665543

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.20  E-value=0.0011  Score=51.48  Aligned_cols=98  Identities=10%  Similarity=0.028  Sum_probs=65.2

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH----------HHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL----------GDARKMWFEMIHKGLLPNEYTYNSMIHGY  349 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~  349 (427)
                      .+.+.+++|.+.++...+.... +...|..+..++...+++          ++|+..|++.++.... +..+|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            4556677888888887776544 667777777777777654          4777777777776422 456777777777


Q ss_pred             hhcC-----------CHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          350 CRID-----------NLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       350 ~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      ...|           ++++|.+.|++..+.  .|+...|...+
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al  131 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSL  131 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence            7664           677777777777764  45554444333

>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1

Probab=97.19  E-value=0.00096  Score=51.73  Aligned_cols=99  Identities=10%  Similarity=0.009  Sum_probs=65.5

Q ss_pred             HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh----------HHHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 045814          245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR----------LEAYRVFNDLKERGYVPDTVMYTTVIHGL  314 (427)
Q Consensus       245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~----------~~a~~~~~~m~~~~~~p~~~~~~~li~~~  314 (427)
                      .+.+.+++|.+.++...+.... +...|..+..++...+++          ++|+..|++..+.... +..+|..+..+|
T Consensus        13 ~r~~~feeA~~~~~~Ai~l~P~-~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay   90 (158)
T 1zu2_A           13 DRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAY   90 (158)
T ss_dssp             HHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHH
Confidence            3445577777777777766432 566777777777776654          4777777777776543 556777777777


Q ss_pred             HccC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 045814          315 CKMG-----------WLGDARKMWFEMIHKGLLPNEYTYNSMIH  347 (427)
Q Consensus       315 ~~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~  347 (427)
                      ...|           ++++|...|++..+.  .|+...|...+.
T Consensus        91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~  132 (158)
T 1zu2_A           91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE  132 (158)
T ss_dssp             HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred             HHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence            7664           677888888877775  556555544433

>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A

Probab=97.09  E-value=0.0034  Score=44.69  Aligned_cols=64  Identities=22%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE  201 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  201 (427)
                      +...+..+..+|...|++++|+..|++..+.... +...|..+..+|...|++++|...|++.++
T Consensus         6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~   69 (100)
T 3ma5_A            6 DPFTRYALAQEHLKHDNASRALALFEELVETDPD-YVGTYYHLGKLYERLDRTDDAIDTYAQGIE   69 (100)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            4566777777777788888888888777776443 556777777777777777777777776653

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=97.04  E-value=0.0017  Score=60.00  Aligned_cols=87  Identities=5%  Similarity=-0.120  Sum_probs=64.5

Q ss_pred             ccCCHHHHHHHHHHHHHc---CCC---CC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CC-CCC-hhhHHHHH
Q 045814          316 KMGWLGDARKMWFEMIHK---GLL---PN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GY-GET-TVTYNTLI  381 (427)
Q Consensus       316 ~~g~~~~a~~~~~~m~~~---~~~---p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~-~p~-~~~~~~li  381 (427)
                      ..|++++|+.++++..+.   -+.   |+ ..+++.+..+|...|++++|+.++++..+.     |- .|+ ..+|+.|.
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa  389 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG  389 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence            457888888888887653   111   22 357888888999999999999988887643     21 222 46788889


Q ss_pred             HHHHhcCCHHHHHHHHHHHHH
Q 045814          382 AGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       382 ~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ..|...|++++|..++++..+
T Consensus       390 ~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          390 RLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhccCHHHHHHHHHHHHH
Confidence            999999999999999888765

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.98  E-value=0.0025  Score=58.91  Aligned_cols=92  Identities=13%  Similarity=-0.014  Sum_probs=65.8

Q ss_pred             HHHHHccCCHHHHHHHHHHHHHcC---CCC----CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----C-CCCC-hhh
Q 045814          311 IHGLCKMGWLGDARKMWFEMIHKG---LLP----NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----G-YGET-TVT  376 (427)
Q Consensus       311 i~~~~~~g~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~  376 (427)
                      +..+.+.|++++|+.++++..+..   +.|    ...+++.+...|...|++++|+.++++..+.     | ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            444556788888888888877541   111    2346788888888888888888888877642     2 1122 457


Q ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          377 YNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       377 ~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88888888889999988888887654

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.91  E-value=0.022  Score=50.71  Aligned_cols=73  Identities=12%  Similarity=-0.032  Sum_probs=49.5

Q ss_pred             CCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHhHH
Q 045814          336 LPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVITY  412 (427)
Q Consensus       336 ~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~  412 (427)
                      ..+..+|..+...+...|++++|...++++...+  |+...|..+...+.-.|++++|.+.|++....  .|...||
T Consensus       274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~  346 (372)
T 3ly7_A          274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL  346 (372)
T ss_dssp             TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred             CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence            3455666666666666677777777777777764  56666666677777777777777777776664  4555554

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*

Probab=96.76  E-value=0.0047  Score=57.06  Aligned_cols=94  Identities=12%  Similarity=-0.006  Sum_probs=64.2

Q ss_pred             hcCChhHHHHHHHHHHhc---CCCc----CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHH
Q 045814          150 ESGLIEEAFCAFSKLKEM---GVFG----SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELL  222 (427)
Q Consensus       150 ~~~~~~~A~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  222 (427)
                      ..|++++|+.++++..+.   -+.|    ...+++.|..+|...|++++|+.++++.+                   +++
T Consensus       310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL-------------------~i~  370 (433)
T 3qww_A          310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKII-------------------KPY  370 (433)
T ss_dssp             TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH-------------------HHH
T ss_pred             hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH-------------------HHH
Confidence            356788888888877642   1122    24677888888888888888888766443                   444


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814          223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA  262 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  262 (427)
                      ++.......-...+++.|...|...|++++|+.++++..+
T Consensus       371 ~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~  410 (433)
T 3qww_A          371 SKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA  410 (433)
T ss_dssp             HHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence            4443322222345788888999999999999988887654

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*

Probab=96.71  E-value=0.0056  Score=56.59  Aligned_cols=92  Identities=10%  Similarity=0.003  Sum_probs=70.8

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCC---CCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----C-CCCC-HHH
Q 045814          276 INGLCKSRKRLEAYRVFNDLKERG---YVP----DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----G-LLPN-EYT  341 (427)
Q Consensus       276 l~~~~~~~~~~~a~~~~~~m~~~~---~~p----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~-~~p~-~~~  341 (427)
                      +..+.+.|++++|+.++++..+..   .-|    ...+++.+..+|...|++++|+.+++++...     | ..|+ ..+
T Consensus       294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~  373 (429)
T 3qwp_A          294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ  373 (429)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred             HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence            455667889999999999887531   112    2457888999999999999999999987643     2 2233 357


Q ss_pred             HHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          342 YNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       342 ~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      ++.|...|...|++++|..++++..+
T Consensus       374 l~nLa~~~~~~g~~~eA~~~~~~Al~  399 (429)
T 3qwp_A          374 VMKVGKLQLHQGMFPQAMKNLRLAFD  399 (429)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence            88899999999999999999988764

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=96.69  E-value=0.038  Score=43.43  Aligned_cols=100  Identities=14%  Similarity=0.154  Sum_probs=60.0

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814          148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       148 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      ..+.|+++.|.++.+.+      -+...|..|.......|+++-|.+.|......+.+.-.|.-.|+.+....+-+....
T Consensus        15 AL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D~~~L~~Ly~~tg~~e~L~kla~iA~~   88 (177)
T 3mkq_B           15 ALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHSFDKLSFLYLVTGDVNKLSKMQNIAQT   88 (177)
T ss_dssp             HHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCCHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            33456666666665544      145566666666666666666666666666666666666666666655555444444


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  259 (427)
                      .|      -++.....+.-.|+++++.++|.+
T Consensus        89 ~g------~~n~af~~~l~lGdv~~~i~lL~~  114 (177)
T 3mkq_B           89 RE------DFGSMLLNTFYNNSTKERSSIFAE  114 (177)
T ss_dssp             TT------CHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             Cc------cHHHHHHHHHHcCCHHHHHHHHHH
Confidence            43      245555556666777777777643

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.55  E-value=0.036  Score=55.81  Aligned_cols=115  Identities=13%  Similarity=0.084  Sum_probs=63.9

Q ss_pred             HHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHH
Q 045814          114 DSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVW  193 (427)
Q Consensus       114 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~  193 (427)
                      ....+.|+++.|+++.+..   .+...|..+...+.+.++++.|.+.|.++..         |..+...+...++.+...
T Consensus       660 ~~~l~~~~~~~A~~~~~~~---~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~  727 (814)
T 3mkq_A          660 ELALKVGQLTLARDLLTDE---SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLV  727 (814)
T ss_dssp             HHHHHHTCHHHHHHHHTTC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHH
T ss_pred             ehhhhcCCHHHHHHHHHhh---CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHH
Confidence            3445667777777776554   3567777788888888888888888777643         334444444455555444


Q ss_pred             HHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814          194 KLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       194 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  259 (427)
                      ++-+.          ....|+++.|...+...-         -+...+..|.+.+++++|..+-+.
T Consensus       728 ~~~~~----------a~~~~~~~~A~~~~~~~g---------~~~~a~~~~~~~~~~~~A~~lA~~  774 (814)
T 3mkq_A          728 TLAKD----------AETTGKFNLAFNAYWIAG---------DIQGAKDLLIKSQRFSEAAFLGST  774 (814)
T ss_dssp             HHHHH----------HHHTTCHHHHHHHHHHHT---------CHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHH----------HHHcCchHHHHHHHHHcC---------CHHHHHHHHHHcCChHHHHHHHHH
Confidence            43333          333444444444433221         133344555555566665555443

>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A

Probab=96.44  E-value=0.02  Score=57.62  Aligned_cols=130  Identities=11%  Similarity=0.077  Sum_probs=84.4

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcC
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKID  187 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~  187 (427)
                      ....++..+.+.|.++.|.++.+.      .   ..-.......|++++|.++.+.+      .+...|..+...+.+.+
T Consensus       631 ~~~~~~~~l~~~~~~~~a~~~~~~------~---~~~f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~  695 (814)
T 3mkq_A          631 SLTKIARFLEGQEYYEEALNISPD------Q---DQKFELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF  695 (814)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHCCC------H---HHHHHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHhCCChHHheecCCC------c---chheehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence            337777888888888888876532      1   11133456679999998886543      36788999999999999


Q ss_pred             ChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHH
Q 045814          188 RTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLH  258 (427)
Q Consensus       188 ~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~  258 (427)
                      +++.|.+.|..+.....+...+...|+.+...++-+.....|      -++....+|.+.|++++|.+++.
T Consensus       696 ~~~~A~~~y~~~~d~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~~~~  760 (814)
T 3mkq_A          696 NFKLAIEAFTNAHDLESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKDLLI  760 (814)
T ss_dssp             CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred             CHHHHHHHHHHccChhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHHHHH
Confidence            999999888877666666666666666665555444444433      12333334444555555555544

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=96.26  E-value=0.013  Score=41.23  Aligned_cols=52  Identities=13%  Similarity=0.091  Sum_probs=21.0

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChh-hHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTV-MYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      .+.|++++|...|++..+.... +.. .|..+..+|...|++++|...|++..+
T Consensus        11 ~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~   63 (99)
T 2kc7_A           11 INQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIE   63 (99)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence            3344444444444444333211 223 333444444444444444444444443

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=96.25  E-value=0.27  Score=42.05  Aligned_cols=83  Identities=11%  Similarity=-0.007  Sum_probs=43.6

Q ss_pred             HHHHHHHHHhhCCCCCC---HhhHHHHHHHHHhc-----CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc-CCHHH
Q 045814          252 RVSELLHTMVARNRAPD---NFTYEEVINGLCKS-----RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM-GWLGD  322 (427)
Q Consensus       252 ~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~-----~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~~~  322 (427)
                      .|...+++.++.  .|+   ...|..+...|.+.     |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus       181 ~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~  258 (301)
T 3u64_A          181 AAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG  258 (301)
T ss_dssp             HHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred             HHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence            444455555444  222   34555555555553     56666666666665553321244555555555553 56666


Q ss_pred             HHHHHHHHHHcCCC
Q 045814          323 ARKMWFEMIHKGLL  336 (427)
Q Consensus       323 a~~~~~~m~~~~~~  336 (427)
                      +.+.+++.......
T Consensus       259 a~~~L~kAL~a~p~  272 (301)
T 3u64_A          259 FDEALDRALAIDPE  272 (301)
T ss_dssp             HHHHHHHHHHCCGG
T ss_pred             HHHHHHHHHcCCCC
Confidence            66666666655444

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=96.22  E-value=0.24  Score=36.73  Aligned_cols=139  Identities=10%  Similarity=0.070  Sum_probs=70.7

Q ss_pred             HhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHC
Q 045814          149 CESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLED  228 (427)
Q Consensus       149 ~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~  228 (427)
                      .-.|.+++..++..+....   .+..-||..+--....-+.+-..+.++.+-+.    .-....|++......+-.+-  
T Consensus        18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki----FDis~C~NlKrVi~C~~~~n--   88 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY----FDLDKCQNLKSVVECGVINN--   88 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG----SCGGGCSCTHHHHHHHHHTT--
T ss_pred             HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh----cCcHhhhcHHHHHHHHHHhc--
Confidence            3456777777777776653   24555666666666666666555555544321    00122333333333222211  


Q ss_pred             CCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCC
Q 045814          229 GLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGY  300 (427)
Q Consensus       229 ~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~  300 (427)
                         .+...++..++.+..+|+.++-.+++..+.. +.+|+....-.+..+|.+.|+..+|.+++.+.-+.|+
T Consensus        89 ---~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~  156 (172)
T 1wy6_A           89 ---TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGE  156 (172)
T ss_dssp             ---CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred             ---chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhh
Confidence               1333444555555555665555555555432 2244455555555556666666666665555555554

>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A

Probab=96.20  E-value=0.63  Score=41.43  Aligned_cols=48  Identities=10%  Similarity=-0.074  Sum_probs=27.4

Q ss_pred             CCCHHhHHHHHHHHH--hcC---ChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          135 SPNPNSLELYIQCLC--ESG---LIEEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       135 ~~~~~~~~~li~~~~--~~~---~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      +.+...|...+++..  ..+   ...+|..+|++..+..+. ....|..+.-+|
T Consensus       191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~-~a~A~A~la~a~  243 (372)
T 3ly7_A          191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPE-FTYARAEKALVD  243 (372)
T ss_dssp             CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            445667777665543  333   357888888888876333 344444433333

>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1

Probab=95.98  E-value=0.32  Score=36.07  Aligned_cols=140  Identities=13%  Similarity=0.057  Sum_probs=90.9

Q ss_pred             HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 045814          245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR  324 (427)
Q Consensus       245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  324 (427)
                      .-.|..++..++..+.....   +..-||.+|--....-+-+-..++++.+-+.   .|..          ..|++....
T Consensus        18 ildG~v~qGveii~k~~~ss---ni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FDis----------~C~NlKrVi   81 (172)
T 1wy6_A           18 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   81 (172)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHHHHHHHHHHcCCC---CccccceeeeecchhhchhHHHHHHHHHhhh---cCcH----------hhhcHHHHH
Confidence            34677888888888776653   4455666665555556666666666665332   2322          233333333


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814          325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG  404 (427)
Q Consensus       325 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  404 (427)
                      .-+-.+-     .+...++..+.....+|.-++-.+++.++.. +.+|++...-.+..+|.+.|+..+|.+++.+.-++|
T Consensus        82 ~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG  155 (172)
T 1wy6_A           82 ECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKG  155 (172)
T ss_dssp             HHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhh
Confidence            3332221     1334556667777888888888888888654 346778888888889999999999999999888888


Q ss_pred             CC
Q 045814          405 IF  406 (427)
Q Consensus       405 ~~  406 (427)
                      ++
T Consensus       156 ~k  157 (172)
T 1wy6_A          156 EK  157 (172)
T ss_dssp             CH
T ss_pred             hH
Confidence            75

>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}

Probab=95.95  E-value=0.43  Score=37.44  Aligned_cols=55  Identities=13%  Similarity=0.093  Sum_probs=29.9

Q ss_pred             ChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcC
Q 045814           72 DPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTG  133 (427)
Q Consensus        72 ~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~  133 (427)
                      |+..-..+.-..++.+.|.++.+.+       -+...|..|.+...+.|+++-|.+.|.+.+
T Consensus         7 D~~~rF~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~   61 (177)
T 3mkq_B            7 DPHIRFDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH   61 (177)
T ss_dssp             CHHHHHHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred             ChHHHHHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC
Confidence            3444334444556666666555544       235556666666666666666666665543

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.92  E-value=0.13  Score=39.33  Aligned_cols=82  Identities=16%  Similarity=0.127  Sum_probs=47.2

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG---WLGDARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEEAK  359 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~  359 (427)
                      ...+.+-|.+..+.|. ++..+.-.+..++++.+   +.+++..++++..+.+ .|  +...+-.+.-+|.+.|++++|.
T Consensus        14 l~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~   91 (152)
T 1pc2_A           14 LLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL   91 (152)
T ss_dssp             HHHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred             HHHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence            4455555555555444 35555555666666665   4556777777666653 23  2333444445556777777777


Q ss_pred             HHHHHHHHC
Q 045814          360 RLHKEMLDK  368 (427)
Q Consensus       360 ~~~~~m~~~  368 (427)
                      ++++.+.+.
T Consensus        92 ~y~~~lL~i  100 (152)
T 1pc2_A           92 KYVRGLLQT  100 (152)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHhc
Confidence            777776664

>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}

Probab=95.89  E-value=0.083  Score=36.81  Aligned_cols=58  Identities=16%  Similarity=0.194  Sum_probs=43.4

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEY-TYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ....+.+.|++++|...++++.+... .+.. .+..+..+|...|++++|.+.|++..+.
T Consensus         6 ~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~   64 (99)
T 2kc7_A            6 TIKELINQGDIENALQALEEFLQTEP-VGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL   64 (99)
T ss_dssp             HHHHHHHHTCHHHHHHHHHHHHHHCS-STHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHHCC-CcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence            44566778888888888888877632 2455 7777777888888888888888888775

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.71  E-value=0.12  Score=35.85  Aligned_cols=65  Identities=11%  Similarity=0.013  Sum_probs=33.5

Q ss_pred             ChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          303 DTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      |...+..+..++...++   .++|..++++..+.... +......+...+.+.|++++|...|+.+.+.
T Consensus         5 ~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A            5 TATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34444444544433322   45666666665554321 3444555555555566666666666665554

>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}

Probab=95.39  E-value=0.16  Score=35.35  Aligned_cols=48  Identities=6%  Similarity=0.042  Sum_probs=23.5

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .++|..++++..+.... ++.....+...+.+.|++++|...|+++.+.
T Consensus        25 ~~~A~~~l~~AL~~dp~-~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~   72 (93)
T 3bee_A           25 TDEVSLLLEQALQLEPY-NEAALSLIANDHFISFRFQEAIDTWVLLLDS   72 (93)
T ss_dssp             CHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred             CHHHHHHHHHHHHHCcC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence            34555555555444322 3344444445555555555555555555544

>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1

Probab=95.33  E-value=0.32  Score=37.16  Aligned_cols=80  Identities=16%  Similarity=0.082  Sum_probs=35.3

Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 045814          321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID---NLEEAKRLHKEMLDKGYGE--TTVTYNTLIAGLCLHGRTDEAYH  395 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~A~~  395 (427)
                      ..+.+-|.+....|. ++..+-..+..++++.+   +++++..++++..+.+ .|  +...+-.|.-+|.+.|++++|.+
T Consensus        15 ~~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~   92 (152)
T 1pc2_A           15 LKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALK   92 (152)
T ss_dssp             HHHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHH
T ss_pred             HHHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHH
Confidence            334444444444332 34444444444444444   3445555555554432 12  12233333344455555555555


Q ss_pred             HHHHHHH
Q 045814          396 LFEEMAQ  402 (427)
Q Consensus       396 ~~~~m~~  402 (427)
                      .++.+.+
T Consensus        93 y~~~lL~   99 (152)
T 1pc2_A           93 YVRGLLQ   99 (152)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHh
Confidence            5555554

>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*

Probab=95.31  E-value=0.19  Score=43.03  Aligned_cols=92  Identities=8%  Similarity=-0.007  Sum_probs=64.9

Q ss_pred             hHHHHHHHHHHHhCCCCCC---hhhHHHHHHHHHcc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc-CCH
Q 045814          285 RLEAYRVFNDLKERGYVPD---TVMYTTVIHGLCKM-----GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI-DNL  355 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~---~~~~~~li~~~~~~-----g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~-g~~  355 (427)
                      ...|...+++..+.  .|+   ...|..+...|.+.     |+.++|.+.|++.++.+..-+..++......++.. |+.
T Consensus       179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~  256 (301)
T 3u64_A          179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR  256 (301)
T ss_dssp             HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred             HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence            45677777777765  344   45788888888874     88888888888888864322356677777777774 888


Q ss_pred             HHHHHHHHHHHHCCCC--CChhhHH
Q 045814          356 EEAKRLHKEMLDKGYG--ETTVTYN  378 (427)
Q Consensus       356 ~~a~~~~~~m~~~~~~--p~~~~~~  378 (427)
                      +.+.+.+++.......  |+....+
T Consensus       257 ~~a~~~L~kAL~a~p~~~P~~~lan  281 (301)
T 3u64_A          257 AGFDEALDRALAIDPESVPHNKLLV  281 (301)
T ss_dssp             HHHHHHHHHHHHCCGGGCSSCHHHH
T ss_pred             HHHHHHHHHHHcCCCCCCCChhHHH
Confidence            8888888888887554  5544333

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=95.13  E-value=0.34  Score=36.70  Aligned_cols=53  Identities=8%  Similarity=0.083  Sum_probs=26.7

Q ss_pred             CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 045814          353 DNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       353 g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~  406 (427)
                      +++++|.++|+.+.+.+-.- ...|-...+--.+.|+.++|.+++.+....+.+
T Consensus        74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            45555555555554431111 444444444445555555555555555555444

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.83  E-value=0.25  Score=35.02  Aligned_cols=62  Identities=6%  Similarity=-0.039  Sum_probs=28.2

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCC------CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARN------RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE  297 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~------~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  297 (427)
                      .+..+...+.+.+++..|...|+...+..      ..+....+..+..+|.+.|+++.|...++++.+
T Consensus         7 dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A            7 DCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            34444555555555555555555444321      011223444444444445555555554444443

>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A

Probab=94.44  E-value=0.46  Score=33.63  Aligned_cols=28  Identities=18%  Similarity=0.259  Sum_probs=13.3

Q ss_pred             HHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          340 YTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       340 ~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      ..+..+..+|.+.|+++.|..++++..+
T Consensus        47 ~i~~~L~~~~~~~g~~~~A~~~~~~al~   74 (104)
T 2v5f_A           47 SVLDYLSYAVYQQGDLDKALLLTKKLLE   74 (104)
T ss_dssp             HHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence            3444444444445555555554444443

>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A

Probab=94.38  E-value=0.49  Score=35.82  Aligned_cols=102  Identities=9%  Similarity=0.093  Sum_probs=50.8

Q ss_pred             CHHHHHHHHHHHHccCCh------hHHHHHHHHHhhCCCCCCHh-hHHHHHHH------HHhcCChHHHHHHHHHHHhCC
Q 045814          233 ENTAFNKLISRFCEKKNF------GRVSELLHTMVARNRAPDNF-TYEEVING------LCKSRKRLEAYRVFNDLKERG  299 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~------~~a~~~~~~m~~~~~~~~~~-~~~~ll~~------~~~~~~~~~a~~~~~~m~~~~  299 (427)
                      |..+|-..+...-+.|+.      ++..++|++.... ++|+.. .|...+..      +...+++++|.++|+.+...+
T Consensus        12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h   90 (161)
T 4h7y_A           12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC   90 (161)
T ss_dssp             SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred             CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence            455666666666666666      6666777766654 344321 11111110      112355556666666554432


Q ss_pred             CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC
Q 045814          300 YVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL  336 (427)
Q Consensus       300 ~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  336 (427)
                      -+. ...|....+--.+.|+++.|.+++......+.+
T Consensus        91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k  126 (161)
T 4h7y_A           91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAV  126 (161)
T ss_dssp             TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCB
T ss_pred             HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCC
Confidence            222 444444444455556666666666655555444

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=94.36  E-value=0.84  Score=41.35  Aligned_cols=69  Identities=12%  Similarity=0.130  Sum_probs=41.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHH-----hCCCCCChhh
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLK-----ERGYVPDTVM  306 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~-----~~~~~p~~~~  306 (427)
                      ...++..+...|++.++...+..+.... +.+...|..+|.++.+.|+..+|.+.|+...     +.|+.|+..+
T Consensus       174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l  247 (388)
T 2ff4_A          174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL  247 (388)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred             HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence            3445555666666666666666665543 2355566666667777777766666666653     2366665543

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=93.53  E-value=0.48  Score=34.82  Aligned_cols=22  Identities=14%  Similarity=0.102  Sum_probs=11.0

Q ss_pred             HHHHHhcCCHHHHHHHHHHHHH
Q 045814          381 IAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       381 i~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      .-++.+.|++++|.+.++.+.+
T Consensus        81 Avg~yklg~Y~~A~~~~~~lL~  102 (126)
T 1nzn_A           81 AVGNYRLKEYEKALKYVRGLLQ  102 (126)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHHHHHHH
Confidence            3344455555555555555544

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.87  E-value=1.6  Score=30.31  Aligned_cols=63  Identities=19%  Similarity=0.250  Sum_probs=34.7

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814          319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA  382 (427)
Q Consensus       319 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  382 (427)
                      +.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++-++.+ +.+...+|..+++
T Consensus        25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K-~~~~~~iY~~~lq   87 (109)
T 1v54_E           25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ   87 (109)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCchhhHHHHHH
Confidence            34455555555555566666666666666666666666666666655543 2223334554443

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=92.83  E-value=0.0075  Score=55.17  Aligned_cols=204  Identities=13%  Similarity=0.042  Sum_probs=139.2

Q ss_pred             CCHhhHHHHHHHHHHcCChHHHHHHHHhc-CCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814          104 PDLVSCNVLFDSLVEARAFKVAMDFLDST-GFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLG  182 (427)
Q Consensus       104 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  182 (427)
                      -|+..|..++.+..+.|.+++....+.-. ....++..=+.|+.+|++.++..+-++++       -.|+..-...+.+-
T Consensus        81 ~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~~IDteLi~ayAk~~rL~elEefl-------~~~N~A~iq~VGDr  153 (624)
T 3lvg_A           81 DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFI-------NGPNNAHIQQVGDR  153 (624)
T ss_dssp             SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCSTTTTHHHHHHHHTSCSSSTTTSTT-------SCCSSSCTHHHHHH
T ss_pred             CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccHHHHHHHHHhhCcHHHHHHHH-------cCCCcccHHHHHHH
Confidence            36777888888888888888888877642 22345556677888888888877655443       23666667778888


Q ss_pred             HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814          183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA  262 (427)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  262 (427)
                      |-..|.++.|.-+|..+....-|...+.+.|++..|.+.-++      .-++.||..+-.+|...+.+.-|.-.--.++-
T Consensus       154 cf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK------Ans~ktWKeV~~ACvd~~EfrLAqicGLniIv  227 (624)
T 3lvg_A          154 CYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK------ANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV  227 (624)
T ss_dssp             HHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT------CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred             HHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh------cCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence            888888888888888888777888888888988888654322      23667899999999998888766544333322


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 045814          263 RNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMW  327 (427)
Q Consensus       263 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~  327 (427)
                      ..     .-...++..|-..|.+++.+.+++.-.... ......|+-|.-.|++- ++++..+-+
T Consensus       228 ha-----deL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHl  285 (624)
T 3lvg_A          228 HA-----DELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHL  285 (624)
T ss_dssp             CS-----SCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHH
T ss_pred             cH-----HHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHH
Confidence            21     122345566777888888888887765321 23556777777777764 344444433

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=92.80  E-value=0.72  Score=45.42  Aligned_cols=54  Identities=9%  Similarity=-0.005  Sum_probs=42.5

Q ss_pred             HHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      +.|...|+++.|.++-++.... .+-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus       345 ~FLl~K~~~elAL~~Ak~AV~~-aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          345 NFLLNRGDYELALGVSNTSTEL-ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH-CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             HHHhccCcHHHHHHHHHHHHhc-CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence            4456678888898888888775 23357888899999999999999988888774

>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*

Probab=92.73  E-value=0.56  Score=42.54  Aligned_cols=69  Identities=12%  Similarity=0.033  Sum_probs=36.9

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH-----CCCCCChh
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD-----KGYGETTV  375 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~-----~~~~p~~~  375 (427)
                      +...++.++...|+.++|...+..+.... +-+...+..+|.++.+.|+..+|.+.|+.+.+     .|+.|+..
T Consensus       173 a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~  246 (388)
T 2ff4_A          173 AHTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT  246 (388)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence            33444455555566666665555555442 23455566666666666666666666555432     25555544

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=92.60  E-value=9.7  Score=38.51  Aligned_cols=298  Identities=9%  Similarity=0.016  Sum_probs=153.4

Q ss_pred             HHcCChHHHHHHHHhcCC---CCCHH--hHHHHHHHHHhcCChhHHHHHHHHHHhcCC-------CcCHhhHHHHHHHHH
Q 045814          117 VEARAFKVAMDFLDSTGF---SPNPN--SLELYIQCLCESGLIEEAFCAFSKLKEMGV-------FGSIKTWNSALLGCI  184 (427)
Q Consensus       117 ~~~~~~~~a~~~~~~~~~---~~~~~--~~~~li~~~~~~~~~~~A~~~~~~m~~~g~-------~p~~~~~~~ll~~~~  184 (427)
                      ...|+.++++.++++.-.   ..+..  .-..+.-+....|..+++..++.......-       .+....-.++.-+++
T Consensus       385 Ih~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLGla  464 (963)
T 4ady_A          385 IHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIGLA  464 (963)
T ss_dssp             HTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHHHH
T ss_pred             hccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHHHH
Confidence            345666777777766321   12222  223334445556665667776666554211       011222233333333


Q ss_pred             HcCCh-hHHHHHHHHHHhc-ch---------hHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH--HHccCChh
Q 045814          185 KIDRT-DLVWKLYHDLIES-GY---------LIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISR--FCEKKNFG  251 (427)
Q Consensus       185 ~~~~~-~~a~~~~~~~~~~-~~---------l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~--~~~~~~~~  251 (427)
                      -.|.- +++.+.+..++.. +.         +...++-.|+.+....++..+.+..   +......+..+  +.-.|+.+
T Consensus       465 ~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~---~e~vrR~aalgLGll~~g~~e  541 (963)
T 4ady_A          465 AMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ---HGNITRGLAVGLALINYGRQE  541 (963)
T ss_dssp             STTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS---CHHHHHHHHHHHHHHTTTCGG
T ss_pred             hcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC---cHHHHHHHHHHHHhhhCCChH
Confidence            33432 3445555544432 21         3333456677777777777666532   22333333333  34678888


Q ss_pred             HHHHHHHHHhhCCCCCCHhhHH---HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          252 RVSELLHTMVARNRAPDNFTYE---EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       252 ~a~~~~~~m~~~~~~~~~~~~~---~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      .+..+++.+.... .|.. -|.   ++.-+|+..|+.....+++..+.... ..++.-...+.-++...|+.+.+.++++
T Consensus       542 ~~~~li~~L~~~~-dp~v-Rygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~  618 (963)
T 4ady_A          542 LADDLITKMLASD-ESLL-RYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQ  618 (963)
T ss_dssp             GGHHHHHHHHHCS-CHHH-HHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTT
T ss_pred             HHHHHHHHHHhCC-CHHH-HHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHH
Confidence            8888888776642 2222 232   33445677888877777888877642 1233333334445555677666777776


Q ss_pred             HHHHcCCCCCHHHHHHHHHHHhhcCCH-HHHHHHHHHHHHCCCCCChhhHHHHHHHH--HhcC-------CHHHHHHHHH
Q 045814          329 EMIHKGLLPNEYTYNSMIHGYCRIDNL-EEAKRLHKEMLDKGYGETTVTYNTLIAGL--CLHG-------RTDEAYHLFE  398 (427)
Q Consensus       329 ~m~~~~~~p~~~~~~~li~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~li~~~--~~~g-------~~~~A~~~~~  398 (427)
                      .+.+.+ .|...--..+.-+....|.. .++..++..+...   +|..+-...+.++  .-.|       +....++.+.
T Consensus       619 ~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~D---~d~~Vrq~Ai~ALG~Ig~gtnna~~~rva~~l~~L~  694 (963)
T 4ady_A          619 LLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTKD---PVDFVRQAAMIALSMILIQQTEKLNPQVADINKNFL  694 (963)
T ss_dssp             TGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHTC---SSHHHHHHHHHHHHHHSTTCCTTTCTTHHHHHHHHH
T ss_pred             HHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHccC---CCHHHHHHHHHHHHHHhcCCccccchHHHHHHHHHH
Confidence            665543 44544444444444445443 5777788888653   3443333333333  3333       2333334333


Q ss_pred             HHHH-CCCCCCHhHHHHHHHHHHhcCC
Q 045814          399 EMAQ-KGIFRDVITYNTLIQGYCKEGK  424 (427)
Q Consensus       399 ~m~~-~g~~p~~~~~~~li~~~~~~g~  424 (427)
                      .... +.-.++...-..+.++....|+
T Consensus       695 ~~~~dk~~d~~~~fga~iAqGll~aG~  721 (963)
T 4ady_A          695 SVITNKHQEGLAKFGACVAQGIMNAGG  721 (963)
T ss_dssp             HHHHCSSSCHHHHHHHHHHHHHHTTGG
T ss_pred             HHHhcccccHHHHHHHHHHHHHHhcCC
Confidence            3332 2334556777777777777764

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.53  E-value=6.4  Score=36.27  Aligned_cols=57  Identities=12%  Similarity=0.023  Sum_probs=25.4

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhC--CCCCC---hhhHHHHHHHHHccCCHHHHHHHHHHH
Q 045814          274 EVINGLCKSRKRLEAYRVFNDLKER--GYVPD---TVMYTTVIHGLCKMGWLGDARKMWFEM  330 (427)
Q Consensus       274 ~ll~~~~~~~~~~~a~~~~~~m~~~--~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m  330 (427)
                      .|...|...|++.+|.+++..+...  |....   ...|...++.|...+++.+|..++.++
T Consensus       142 ~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki  203 (445)
T 4b4t_P          142 DLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKI  203 (445)
T ss_dssp             HHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence            3444455555555555555554322  11101   123344444455555555555555544

>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=92.40  E-value=6.6  Score=36.16  Aligned_cols=95  Identities=7%  Similarity=-0.038  Sum_probs=52.2

Q ss_pred             HHHHHHHHccCChhHHHHHHHHHhhC--CCCCC---HhhHHHHHHHHHhcCChHHHHHHHHHHHh----CCCCCC--hhh
Q 045814          238 NKLISRFCEKKNFGRVSELLHTMVAR--NRAPD---NFTYEEVINGLCKSRKRLEAYRVFNDLKE----RGYVPD--TVM  306 (427)
Q Consensus       238 ~~li~~~~~~~~~~~a~~~~~~m~~~--~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~----~~~~p~--~~~  306 (427)
                      ..|...+...|++.+|.+++..+...  +....   ...+...++.|...+++..|..++.++..    ....|+  ...
T Consensus       141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~  220 (445)
T 4b4t_P          141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY  220 (445)
T ss_dssp             HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence            44556666667777777766665432  11111   23455556666777777777776666532    111122  224


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      |..++..+...+++.+|...|.++..
T Consensus       221 ~~~~~~~~~~e~~y~~a~~~y~e~~~  246 (445)
T 4b4t_P          221 YNLLVKISLHKREYLEVAQYLQEIYQ  246 (445)
T ss_dssp             HHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence            45555666666777766666665543

>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...

Probab=92.33  E-value=1.9  Score=30.04  Aligned_cols=48  Identities=13%  Similarity=0.151  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      .-++.+-++.+......|++....+.+.+|-+.+++..|.++++-++.
T Consensus        26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~   73 (109)
T 1v54_E           26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   73 (109)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334555555555555555555555555555555555555555555543

>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N

Probab=91.90  E-value=12  Score=37.92  Aligned_cols=154  Identities=7%  Similarity=0.078  Sum_probs=81.9

Q ss_pred             HHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHH---HHHHHHHccCCH
Q 045814          244 FCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYT---TVIHGLCKMGWL  320 (427)
Q Consensus       244 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~---~li~~~~~~g~~  320 (427)
                      +.-.|+-+....++..+.+.. .-+..-...+.-++...|+.+.+..+.+.+.... .| ..-|.   ++.-+|+..|+.
T Consensus       500 ~vGTgn~~ai~~LL~~~~e~~-~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp-~vRygaa~alglAyaGTGn~  576 (963)
T 4ady_A          500 MLGTGKPEAIHDMFTYSQETQ-HGNITRGLAVGLALINYGRQELADDLITKMLASD-ES-LLRYGGAFTIALAYAGTGNN  576 (963)
T ss_dssp             HTTCCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CH-HHHHHHHHHHHHHTTTSCCH
T ss_pred             hcccCCHHHHHHHHHHHhccC-cHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CH-HHHHHHHHHHHHHhcCCCCH
Confidence            445566666666766655432 1112222222233446677777777777776531 11 12222   233456677777


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH-HHHHHHHHH
Q 045814          321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRT-DEAYHLFEE  399 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~-~~A~~~~~~  399 (427)
                      ....+++..+.... ..++.-...+.-++...|+.+.+.++++.+.+.+ .|.+.--..+.-+....|.. .+|..++..
T Consensus       577 ~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~  654 (963)
T 4ady_A          577 SAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDP  654 (963)
T ss_dssp             HHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHH
T ss_pred             HHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHH
Confidence            66666777776542 2233333333334444566666666666555542 34444444444455555553 567777777


Q ss_pred             HHH
Q 045814          400 MAQ  402 (427)
Q Consensus       400 m~~  402 (427)
                      +..
T Consensus       655 L~~  657 (963)
T 4ady_A          655 LTK  657 (963)
T ss_dssp             HHT
T ss_pred             Hcc
Confidence            764

>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A

Probab=91.56  E-value=1.1  Score=32.97  Aligned_cols=84  Identities=17%  Similarity=0.166  Sum_probs=51.6

Q ss_pred             CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHhhcCCHHH
Q 045814          283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGD---ARKMWFEMIHKGLLP--NEYTYNSMIHGYCRIDNLEE  357 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~---a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~  357 (427)
                      .....+.+-|.+....|. ++..+--.+..++++......   ++.+++++.+.+ .|  .....-.+.-++.+.|++++
T Consensus        15 ~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~   92 (126)
T 1nzn_A           15 EDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEK   92 (126)
T ss_dssp             HHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred             HHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHH
Confidence            344455555665555443 455555556666776665544   777777777653 22  22334445557778888888


Q ss_pred             HHHHHHHHHHC
Q 045814          358 AKRLHKEMLDK  368 (427)
Q Consensus       358 a~~~~~~m~~~  368 (427)
                      |.+.++.+.+.
T Consensus        93 A~~~~~~lL~~  103 (126)
T 1nzn_A           93 ALKYVRGLLQT  103 (126)
T ss_dssp             HHHHHHHHHHH
T ss_pred             HHHHHHHHHHh
Confidence            88888888775

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=91.20  E-value=8.2  Score=40.46  Aligned_cols=81  Identities=16%  Similarity=0.110  Sum_probs=40.4

Q ss_pred             HHHHHHHHHccCChhHHHHHHHHHhhCCCCCC----HhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          237 FNKLISRFCEKKNFGRVSELLHTMVARNRAPD----NFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       237 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      |.-++..+.+.+.++.+.++-...++....-+    ...|..+.+++...|++++|...+-.+.....+  ......++.
T Consensus       902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r--~~cLr~LV~  979 (1139)
T 4fhn_B          902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK--KSCLLDFVN  979 (1139)
T ss_dssp             HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC--HHHHHHHHH
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH--HHHHHHHHH
Confidence            45555566666666666655554443321111    124556666666666666666666555443222  223444444


Q ss_pred             HHHccCC
Q 045814          313 GLCKMGW  319 (427)
Q Consensus       313 ~~~~~g~  319 (427)
                      ..|..|.
T Consensus       980 ~lce~~~  986 (1139)
T 4fhn_B          980 QLTKQGK  986 (1139)
T ss_dssp             HHHHHCC
T ss_pred             HHHhCCC
Confidence            4444443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=90.89  E-value=3.4  Score=30.46  Aligned_cols=62  Identities=19%  Similarity=0.282  Sum_probs=32.2

Q ss_pred             HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 045814          320 LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIA  382 (427)
Q Consensus       320 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~  382 (427)
                      .-+..+-++.+...++.|++......+++|-+.+|+..|.++|+-++.+ +.+...+|..+++
T Consensus        69 ~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~lq  130 (152)
T 2y69_E           69 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVIQ  130 (152)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHHH
Confidence            3344555555555555555555555556665555666666655555543 2223334444443

>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}

Probab=89.75  E-value=3.8  Score=30.26  Aligned_cols=62  Identities=16%  Similarity=0.200  Sum_probs=36.2

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      |.-+..+-++.+....+.|++....+.+.+|-+.+++..|.++++-.+.+ +.+...+|..++
T Consensus        68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K-~~~~~~iY~y~l  129 (152)
T 2y69_E           68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI  129 (152)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-cCCchhhHHHHH
Confidence            34455555666666666666666666666666666666666666665544 222333454444

>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A

Probab=89.64  E-value=0.74  Score=42.47  Aligned_cols=205  Identities=14%  Similarity=0.175  Sum_probs=135.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChh
Q 045814           76 FREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIE  155 (427)
Q Consensus        76 ~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~  155 (427)
                      +.....+.+.++.-++++.-+++.   ..++..=+.|+-+|++.+++.+..+++.    .||..-...+..-|...|.++
T Consensus        89 Vi~~A~~~~~~edLv~yL~MaRk~---~ke~~IDteLi~ayAk~~rL~elEefl~----~~N~A~iq~VGDrcf~e~lYe  161 (624)
T 3lvg_A           89 VVQAANTSGNWEELVKYLQMARKK---ARESYVETELIFALAKTNRLAELEEFIN----GPNNAHIQQVGDRCYDEKMYD  161 (624)
T ss_dssp             HHHHTTTSSCCTTHHHHHHTTSTT---CCSTTTTHHHHHHHHTSCSSSTTTSTTS----CCSSSCTHHHHHHHHHSCCST
T ss_pred             HHHHHHhCCCHHHHHHHHHHHHHH---hcccccHHHHHHHHHhhCcHHHHHHHHc----CCCcccHHHHHHHHHHccCHH
Confidence            334444556666666666555433   4455666788999999998777655543    466666667777777888888


Q ss_pred             HHHHHHHHHHhcC--------------------CCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhc----chhHHHHHh
Q 045814          156 EAFCAFSKLKEMG--------------------VFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIES----GYLIQAFCN  211 (427)
Q Consensus       156 ~A~~~~~~m~~~g--------------------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~l~~~~~~  211 (427)
                      .|.-+|..+....                    -.-+..||-.+-.+|...+++..|.-.--.++-.    .-++..|-.
T Consensus       162 AAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~  241 (624)
T 3lvg_A          162 AAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQD  241 (624)
T ss_dssp             TSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSST
T ss_pred             HHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHh
Confidence            8877776543211                    1236789999999999999998877665555543    458889999


Q ss_pred             cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCC-------CHhhHHHHHHHHHhcCC
Q 045814          212 DGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAP-------DNFTYEEVINGLCKSRK  284 (427)
Q Consensus       212 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~-------~~~~~~~ll~~~~~~~~  284 (427)
                      .|.+++-+.+++.-.... ......|+-|.-.|++- +.++..+.++..-.+--.|       ....|..++-.|.+-.+
T Consensus       242 ~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE  319 (624)
T 3lvg_A          242 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE  319 (624)
T ss_dssp             TCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTC
T ss_pred             CCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchh
Confidence            999999999998876421 23566788877777764 4555555444322211111       34567777777777777


Q ss_pred             hHHHH
Q 045814          285 RLEAY  289 (427)
Q Consensus       285 ~~~a~  289 (427)
                      ++.|.
T Consensus       320 ~DnA~  324 (624)
T 3lvg_A          320 YDNAI  324 (624)
T ss_dssp             HHHHH
T ss_pred             HHHHH
Confidence            77654

>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}

Probab=89.51  E-value=2  Score=42.30  Aligned_cols=128  Identities=13%  Similarity=0.055  Sum_probs=76.7

Q ss_pred             HHHHHHHHHccCC-hhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCC-hHHHHHHHHHHHhC------CCCC-Chh--
Q 045814          237 FNKLISRFCEKKN-FGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRK-RLEAYRVFNDLKER------GYVP-DTV--  305 (427)
Q Consensus       237 ~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~------~~~p-~~~--  305 (427)
                      ...++..+...++ .+.|.++++++.+.....+......++..+.+.++ --+|.+++.+..+.      ...+ +..  
T Consensus       251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~  330 (754)
T 4gns_B          251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA  330 (754)
T ss_dssp             HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred             HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence            4455666655666 57788899988877432222222233333333332 22455555444321      1111 111  


Q ss_pred             --------hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          306 --------MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       306 --------~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                              ....-..-+...|+++.|+.+-++....  .|+ -.+|..|..+|...|+++.|+-.+..+.
T Consensus       331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~--aPseF~tW~~La~vYi~l~d~e~ALLtLNScP  398 (754)
T 4gns_B          331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTEL--ALDSFESWYNLARCHIKKEEYEKALFAINSMP  398 (754)
T ss_dssp             HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred             cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhc--CchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence                    1112233456789999999999988876  455 5689999999999999999998888763

>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}

Probab=88.82  E-value=16  Score=38.24  Aligned_cols=116  Identities=10%  Similarity=-0.008  Sum_probs=76.0

Q ss_pred             HHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhc--CCCCC--------------------
Q 045814           80 LKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDST--GFSPN--------------------  137 (427)
Q Consensus        80 l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~--~~~~~--------------------  137 (427)
                      +...+..+.+.++..|..      .+...--.+..++...|++++|.+.|++.  ++..+                    
T Consensus       822 l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~~~~~~  895 (1139)
T 4fhn_B          822 LFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAEKYHHQ  895 (1139)
T ss_dssp             HHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHHTTTSC
T ss_pred             HHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhccccccccccccc
Confidence            444566666777776653      34444445567788899999999999863  22110                    


Q ss_pred             ---HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCH----hhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814          138 ---PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSI----KTWNSALLGCIKIDRTDLVWKLYHDLIE  201 (427)
Q Consensus       138 ---~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~  201 (427)
                         ..=|..++..+.+.+.++.+.++-....+....-+.    ..|..+++.+...|++++|...+-.+..
T Consensus       896 ~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd  966 (1139)
T 4fhn_B          896 NLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST  966 (1139)
T ss_dssp             CSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence               122566777888888888888777666543222121    2577888888888998888877765544

>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}

Probab=87.26  E-value=14  Score=32.21  Aligned_cols=101  Identities=13%  Similarity=0.107  Sum_probs=60.3

Q ss_pred             HHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHH----HHHHHhcCCCcCHhhHHHHHHHHHH
Q 045814          110 NVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCA----FSKLKEMGVFGSIKTWNSALLGCIK  185 (427)
Q Consensus       110 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~----~~~m~~~g~~p~~~~~~~ll~~~~~  185 (427)
                      -++..-|.+++++++|.+++-+-            ...+.+.|+...|-++    .+...+.++++|......++..+..
T Consensus        39 RTi~~Ry~~~k~y~eAidLL~~G------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~  106 (336)
T 3lpz_A           39 RLVAARYSKQGNWAAAVDILASV------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRL  106 (336)
T ss_dssp             HHHHHHHHHTTCHHHHHHHHHHH------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTT
T ss_pred             HHHHHHHHhhcCHHHHHHHHHHH------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Confidence            33455578888888888887542            2344455665544433    4556667788888877777777776


Q ss_pred             cCChh-HHHHHHHHHHhcc---------------hhHHHHHhcCChhHHHHHH
Q 045814          186 IDRTD-LVWKLYHDLIESG---------------YLIQAFCNDGKVSEGYELL  222 (427)
Q Consensus       186 ~~~~~-~a~~~~~~~~~~~---------------~l~~~~~~~g~~~~a~~~~  222 (427)
                      ....+ .-..+.+++++|.               .+...|.+.+++.+|...|
T Consensus       107 ~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~  159 (336)
T 3lpz_A          107 FQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL  159 (336)
T ss_dssp             SCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence            65422 3344555555541               2455555556665555544

>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A

Probab=86.62  E-value=6.5  Score=29.00  Aligned_cols=68  Identities=12%  Similarity=0.058  Sum_probs=35.5

Q ss_pred             CCChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          301 VPDTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       301 ~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .|+..+--.+..++++..+   ..+++.+++++.+.+..-....+--+.-++.+.|++++|.++.+.+.+.
T Consensus        37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~  107 (134)
T 3o48_A           37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  107 (134)
T ss_dssp             GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred             CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence            3444443334444444433   3456666666665542112333444455666677777777777666654

>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A

Probab=85.43  E-value=17  Score=31.40  Aligned_cols=167  Identities=13%  Similarity=0.087  Sum_probs=96.7

Q ss_pred             hHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 045814          175 TWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYE----LLRQVLEDGLVPENTAFNKLISRFCEKKNF  250 (427)
Q Consensus       175 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~----~~~~~~~~~~~~~~~~~~~li~~~~~~~~~  250 (427)
                      .|.++..-|.+.+++++|.+++..-.      ..+.+.|+...|-+    +++-+.+.+..++......++..+.....-
T Consensus        35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~~p~~  108 (312)
T 2wpv_A           35 TLRTIANRYVRSKSYEHAIELISQGA------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAELDPS  108 (312)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHH------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTTCCTT
T ss_pred             HHHHHHHHHHHhcCHHHHHHHHHHHH------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCC
Confidence            44555566777788888887765432      23556677665555    455556678888888888888777664321


Q ss_pred             h-HHHHHHHHHhh----CC--CCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc---CCH
Q 045814          251 G-RVSELLHTMVA----RN--RAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM---GWL  320 (427)
Q Consensus       251 ~-~a~~~~~~m~~----~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~---g~~  320 (427)
                      + .-.++++++++    .|  ..-|......+...|.+.|++.+|+..|-.-.    .-|...+..++.-+...   |..
T Consensus       109 ~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~----~~s~~~~a~~l~~w~~~~~~~~~  184 (312)
T 2wpv_A          109 EPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT----HDSMIKYVDLLWDWLCQVDDIED  184 (312)
T ss_dssp             CTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC----HHHHHHHHHHHHHHHHHTTCCCH
T ss_pred             CchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC----CccHHHHHHHHHHHHHhcCCCCc
Confidence            1 12334444432    22  12356677888888888888888887775211    11344555555544443   333


Q ss_pred             HHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHH
Q 045814          321 GDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEML  366 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~  366 (427)
                      .++              +...-..+ -.|.-.|+...|..+++...
T Consensus       185 ~e~--------------dlf~~RaV-L~yL~l~n~~~A~~~~~~f~  215 (312)
T 2wpv_A          185 STV--------------AEFFSRLV-FNYLFISNISFAHESKDIFL  215 (312)
T ss_dssp             HHH--------------HHHHHHHH-HHHHHTTBHHHHHHHHHHHH
T ss_pred             chH--------------HHHHHHHH-HHHHHhcCHHHHHHHHHHHH
Confidence            222              11111222 23446678888888877654

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=85.27  E-value=10  Score=31.68  Aligned_cols=19  Identities=11%  Similarity=0.239  Sum_probs=10.7

Q ss_pred             HHHHHHcCChHHHHHHHHh
Q 045814          113 FDSLVEARAFKVAMDFLDS  131 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~  131 (427)
                      +...++.|+++.+..+++.
T Consensus         9 L~~A~~~g~~~~v~~Ll~~   27 (285)
T 1wdy_A            9 LIKAVQNEDVDLVQQLLEG   27 (285)
T ss_dssp             HHHHHHTTCHHHHHHHHHT
T ss_pred             HHHHHHcCCHHHHHHHHHc
Confidence            4444566666666655554

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=83.83  E-value=32  Score=33.13  Aligned_cols=98  Identities=11%  Similarity=0.096  Sum_probs=64.6

Q ss_pred             HHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC
Q 045814           91 RFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF  170 (427)
Q Consensus        91 ~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~  170 (427)
                      ++-..+....+.......=+.-+..+.+.+++......+.. . +.+...-+....+....|+..+|......+=..|-.
T Consensus        57 ev~~Fl~~~~~~p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~-p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~~~  134 (618)
T 1qsa_A           57 TVTNFVRANPTLPPARTLQSRFVNELARREDWRGLLAFSPE-K-PGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTGKS  134 (618)
T ss_dssp             HHHHHHHHCTTCHHHHHHHHHHHHHHHHTTCHHHHHHHCCS-C-CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCSSC
T ss_pred             HHHHHHHHCCCChhHHHHHHHHHHHHHhCCCHHHHHHhccC-C-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCCCC
Confidence            33444433333333344445667788889999988886554 2 445666666778888889988887777766555533


Q ss_pred             cCHhhHHHHHHHHHHcCChhH
Q 045814          171 GSIKTWNSALLGCIKIDRTDL  191 (427)
Q Consensus       171 p~~~~~~~ll~~~~~~~~~~~  191 (427)
                       ....+..++..+.+.|....
T Consensus       135 -~p~~c~~l~~~~~~~g~lt~  154 (618)
T 1qsa_A          135 -QPNACDKLFSVWRASGKQDP  154 (618)
T ss_dssp             -CCTHHHHHHHHHHHTTCSCH
T ss_pred             -CcHHHHHHHHHHHHCCCCCH
Confidence             56677888888887776654

>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1

Probab=83.31  E-value=12  Score=27.94  Aligned_cols=67  Identities=12%  Similarity=0.059  Sum_probs=36.4

Q ss_pred             CChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          302 PDTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       302 p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      |+..+--.+..++.+..+   ..+++.+++++.+.+..-.....-.+.-++.+.|++++|.++.+.+.+.
T Consensus        37 vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~  106 (144)
T 1y8m_A           37 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH  106 (144)
T ss_dssp             SCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred             CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence            444444344445555443   3456666666666432212233334445666777777777777777664

>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*

Probab=82.45  E-value=36  Score=32.75  Aligned_cols=199  Identities=8%  Similarity=-0.096  Sum_probs=105.3

Q ss_pred             cCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHH----HcCChHHHHHHHHh-cCCCCCHHhHHHHHHHHHhcCChhHH
Q 045814           83 QNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLV----EARAFKVAMDFLDS-TGFSPNPNSLELYIQCLCESGLIEEA  157 (427)
Q Consensus        83 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~----~~~~~~~a~~~~~~-~~~~~~~~~~~~li~~~~~~~~~~~A  157 (427)
                      ..+++.|...+.+......+  +......+-..++    ..+...++...+.+ .....+.......+....+.|+++.|
T Consensus       227 r~d~~~A~~~~~~~~~~~~~--~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~r~Alr~~d~~~a  304 (618)
T 1qsa_A          227 RQDAENARLMIPSLAQAQQL--NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGL  304 (618)
T ss_dssp             HHCHHHHHHHHHHHHHHTTC--CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHH
T ss_pred             hcCHHHHHHHHHhhhhccCC--CHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccCCChHHHHHHHHHHHHCCCHHHH
Confidence            35788888888887654434  3333333333333    23424455555554 22234444444555556677999999


Q ss_pred             HHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHH--HHHhcCChhHHHHHHHHHHHCCCCC---
Q 045814          158 FCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQ--AFCNDGKVSEGYELLRQVLEDGLVP---  232 (427)
Q Consensus       158 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~--~~~~~g~~~~a~~~~~~~~~~~~~~---  232 (427)
                      ...|..|...... .....--+.+++...|+.++|..+|..+......-.  +..+.|..-..       ......+   
T Consensus       305 ~~~~~~l~~~~~~-~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~-------~~~~~~~~~~  376 (618)
T 1qsa_A          305 NTWLARLPMEAKE-KDEWRYWQADLLLERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYEL-------KIDKAPQNVD  376 (618)
T ss_dssp             HHHHHHSCTTGGG-SHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCC-------CCCCCCSCCC
T ss_pred             HHHHHHccccccc-cHhHHHHHHHHHHHcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCC-------CCCCCChhHH
Confidence            9999888653222 333344566777888999999999888876421100  01111110000       0000000   


Q ss_pred             CH---HHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHH
Q 045814          233 EN---TAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFND  294 (427)
Q Consensus       233 ~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~  294 (427)
                      ..   ..--..+..+...|....|...+..+... .  +......+.......|.++.+......
T Consensus       377 ~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~-~--~~~~~~~la~~a~~~~~~~~~v~~~~~  438 (618)
T 1qsa_A          377 SALTQGPEMARVRELMYWNLDNTARSEWANLVKS-K--SKTEQAQLARYAFNNQWWDLSVQATIA  438 (618)
T ss_dssp             CHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT-C--CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             hhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc-C--CHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence            00   01112344566778888888777776654 2  222233444445566666666554443

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=81.67  E-value=15  Score=33.57  Aligned_cols=99  Identities=8%  Similarity=-0.116  Sum_probs=57.6

Q ss_pred             hhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcC-CCCCHHHHHH--
Q 045814          270 FTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP--DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKG-LLPNEYTYNS--  344 (427)
Q Consensus       270 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~~p~~~~~~~--  344 (427)
                      .+...+.+.|.+.|++++|.+.|.++......+  -...+-..++.+...+++..+...++++...- -.++...-+.  
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            366677778888888888888888876542222  23456666777777777777777777765331 1112222221  


Q ss_pred             --HHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          345 --MIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       345 --li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                        -...+...+++..|.+.|-+....
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t  237 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLAT  237 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhcc
Confidence              122233456666666666655443

>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1

Probab=81.37  E-value=23  Score=29.77  Aligned_cols=115  Identities=10%  Similarity=0.159  Sum_probs=63.6

Q ss_pred             HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC--CCHhhHHHHHHHHHhcCCh
Q 045814          208 AFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--PDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...+.|+++++++....-++..+. |...-..++..+|-.|+|+.|.+-++...+....  |....|..+|.+       
T Consensus         6 ~ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~~~~a~~yr~lI~a-------   77 (273)
T 1zbp_A            6 NALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKA-------   77 (273)
T ss_dssp             HHTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHH-------
T ss_pred             HHHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchhhHHHHHHHHHHHH-------
Confidence            345677777777777776666544 6777777777777788888777777766665321  122234444432       


Q ss_pred             HHHHHHHHHHHhCCCCCC-----hhhHHHHHHHHH--ccCCHHHHHHHHHHHHHc
Q 045814          286 LEAYRVFNDLKERGYVPD-----TVMYTTVIHGLC--KMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~-----~~~~~~li~~~~--~~g~~~~a~~~~~~m~~~  333 (427)
                         +..-.+...-+-.|.     ..-...++.+..  ..|+.++|..+-.++.+.
T Consensus        78 ---E~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~  129 (273)
T 1zbp_A           78 ---AQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  129 (273)
T ss_dssp             ---HHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             ---HHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence               222333333222221     112233444333  347777777776666544

>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}

Probab=80.50  E-value=12  Score=34.29  Aligned_cols=111  Identities=9%  Similarity=-0.050  Sum_probs=75.3

Q ss_pred             HHHHHHHHHHHccCChhHHHHHHHHHhhCCC--CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC---CCCCChhh--H
Q 045814          235 TAFNKLISRFCEKKNFGRVSELLHTMVARNR--APDNFTYEEVINGLCKSRKRLEAYRVFNDLKER---GYVPDTVM--Y  307 (427)
Q Consensus       235 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~~--~  307 (427)
                      .+...+...|.+.|+++.|.+.+.++.....  ..-...+-.++..+...+++..+...+.++...   +..|+...  .
T Consensus       132 ~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk  211 (429)
T 4b4t_R          132 QAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYK  211 (429)
T ss_dssp             SCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHH
T ss_pred             HHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHH
Confidence            3678899999999999999999999987532  333467788889999999999999999987532   32222221  1


Q ss_pred             HHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 045814          308 TTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSM  345 (427)
Q Consensus       308 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l  345 (427)
                      ..-...+...+++..|...|-+....-...+...+..+
T Consensus       212 ~~~gl~~l~~r~f~~Aa~~f~e~~~t~~~~e~~~~~~~  249 (429)
T 4b4t_R          212 TYYGIHCLAVRNFKEAAKLLVDSLATFTSIELTSYESI  249 (429)
T ss_dssp             HHHHHGGGGTSCHHHHHHHHHHHHHHSCCSCHHHHHHH
T ss_pred             HHHHHHHHHhChHHHHHHHHHHHhccCCccchhhHHHH
Confidence            11222234568888888888776654323333334333

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	427
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.88
d1w3ba_	388	O-GlcNAc transferase p110 subunit, OGT {Human (Hom	99.82
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1fcha_	323	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	99.59
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.22
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.2
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.18
d2h6fa1	315	Protein farnesyltransferase alpha-subunit {Human (	99.12
d2onda1	308	Cleavage stimulation factor 77 kDa subunit CSTF3 {	99.06
d1hz4a_	366	Transcription factor MalT domain III {Escherichia	99.03
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.95
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.92
d1dcea1	334	Rab geranylgeranyltransferase alpha-subunit, N-ter	98.86
d1xnfa_	259	Lipoprotein NlpI {Escherichia coli [TaxId: 562]}	98.83
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.59
d1hh8a_	192	Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H	98.59
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.57
d1qqea_	290	Vesicular transport protein sec17 {Baker's yeast (	98.56
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.4
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.4
d1elwa_	117	Hop {Human (Homo sapiens) [TaxId: 9606]}	98.36
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.34
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.33
d1a17a_	159	Protein phosphatase 5 {Human (Homo sapiens) [TaxId	98.31
d2c2la1	201	STIP1 homology and U box-containing protein 1, STU	98.3
d1ouva_	265	Cysteine rich protein C (HcpC) {Helicobacter pylor	98.28
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.16
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.13
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.13
d1hxia_	112	Peroxin pex5 (peroxisomal targeting signal 1 (PTS1	98.12
d1nzna_	122	Mitochondria fission protein Fis1 {Human (Homo sap	98.07
d1b89a_	336	Clathrin heavy chain proximal leg segment {Cow (Bo	98.02
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.93
d1p5qa1	170	FKBP52 (FKBP4), C-terminal domain {Human (Homo sap	97.92
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.81
d1elra_	128	Hop {Human (Homo sapiens) [TaxId: 9606]}	97.79
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.78
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.77
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.71
d2fbna1	153	Putative 70 kda peptidylprolyl isomerase PFL2275c	97.7
d2ff4a2	179	Probable regulatory protein EmbR, middle domain {M	97.68
d1ya0a1	497	SMG-7 {Human (Homo sapiens) [TaxId: 9606]}	97.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.67
d1ihga1	169	Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}	97.62
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.58
d1kt1a1	168	FKBP51, C-terminal domain {Monkey (Saimiri bolivie	97.53
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.42
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.42
d1zbpa1	264	Hypothetical protein VPA1032 {Vibrio parahaemolyti	97.39
d1zu2a1	145	Mitochondrial import receptor subunit tom20-3 {Tha	97.22
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	97.13
d2hr2a1	156	Hypothetical protein CT2138 {Chlorobium tepidum [T	96.91
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	96.52
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.49
d1tjca_	95	Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human	96.17
d1klxa_	133	Cysteine rich protein B (HcpB) {Helicobacter pylor	95.76
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	95.63
d1wy6a1	161	Hypothetical protein ST1625 {Archaeon Sulfolobus t	94.92
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	92.35
d1v54e_	105	Cytochrome c oxidase subunit E {Cow (Bos taurus) [	91.98
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	90.97
d2pqrb1	124	Mitochondria fission protein Fis1 {Baker's yeast (	84.43

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.88  E-value=1.5e-18  Score=157.88  Aligned_cols=336  Identities=13%  Similarity=0.055  Sum_probs=267.9

Q ss_pred             HHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhH
Q 045814           79 FLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEE  156 (427)
Q Consensus        79 ~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~  156 (427)
                      ..-+.++++.|++.++.+.+.  .+-+...+..+..++.+.|++++|...+++ ....| +..+|..+..+|.+.|++++
T Consensus         8 ~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~   85 (388)
T d1w3ba_           8 REYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE   85 (388)
T ss_dssp             HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccc
Confidence            344678999999999998765  234578899999999999999999999987 33344 46789999999999999999


Q ss_pred             HHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHH----------------------------------HHHhc
Q 045814          157 AFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYH----------------------------------DLIES  202 (427)
Q Consensus       157 A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~----------------------------------~~~~~  202 (427)
                      |.+.+....+.... +..............+....+.....                                  .....
T Consensus        86 A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  164 (388)
T d1w3ba_          86 AIEHYRHALRLKPD-FIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET  164 (388)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred             cccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhcc
Confidence            99999998876544 33333334444433333333333222                                  22211


Q ss_pred             --------chhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHH
Q 045814          203 --------GYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEE  274 (427)
Q Consensus       203 --------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~  274 (427)
                              ..+...+...|++++|...+++....... +...+..+...+...|++++|...++.....+. .+...+..
T Consensus       165 ~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~  242 (388)
T d1w3ba_         165 QPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP-NHAVVHGN  242 (388)
T ss_dssp             CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-TCHHHHHH
T ss_pred             CcchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhh-hHHHHHHH
Confidence                    12566777899999999999998876543 677899999999999999999999999888753 35677888


Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN  354 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  354 (427)
                      +...+.+.|++++|...|++..+.... +..+|..+...+...|++++|...++...... +.+...+..+...+...|+
T Consensus       243 l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~  320 (388)
T d1w3ba_         243 LACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGN  320 (388)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHHHHHHHCCC
Confidence            999999999999999999999887543 57788999999999999999999999988774 4567788899999999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-HhHHHHHHHHHHhcCC
Q 045814          355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRD-VITYNTLIQGYCKEGK  424 (427)
Q Consensus       355 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~li~~~~~~g~  424 (427)
                      +++|...+++..+.. +-+..++..+...|...|++++|.+.|++..+.  .|+ ...|..+...|.+.||
T Consensus       321 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         321 IEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            999999999998753 225778899999999999999999999999874  554 6788999999988875

>d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: O-GlcNAc transferase p110 subunit, OGT
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.82  E-value=2.3e-16  Score=143.04  Aligned_cols=332  Identities=11%  Similarity=0.007  Sum_probs=259.1

Q ss_pred             cccHHHHHHHHHHHhcCCCcchhhhhhhCCCCCCCChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHH
Q 045814           37 QQLYTEIAKQVCKITRTKPRWEQTLLSDIPSFNFNDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSL  116 (427)
Q Consensus        37 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~  116 (427)
                      ...+.+.+..+.+++...|.....+.            .+..++...++++.|+..|+.+.+.  .+-+..++..+..++
T Consensus        12 ~G~~~~A~~~~~~~l~~~p~~~~~~~------------~la~~~~~~~~~~~A~~~~~~al~~--~p~~~~a~~~l~~~~   77 (388)
T d1w3ba_          12 AGDFEAAERHCMQLWRQEPDNTGVLL------------LLSSIHFQCRRLDRSAHFSTLAIKQ--NPLLAEAYSNLGNVY   77 (388)
T ss_dssp             HTCHHHHHHHHHHHHHHCTTCHHHHH------------HHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHhCCCCHHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHh
Confidence            34567777777677666554333222            4456677889999999999998664  233578999999999


Q ss_pred             HHcCChHHHHHHHHhc-CC-CCCH----------------------------------HhHHHHHHHHHhcCChhHHHHH
Q 045814          117 VEARAFKVAMDFLDST-GF-SPNP----------------------------------NSLELYIQCLCESGLIEEAFCA  160 (427)
Q Consensus       117 ~~~~~~~~a~~~~~~~-~~-~~~~----------------------------------~~~~~li~~~~~~~~~~~A~~~  160 (427)
                      .+.|++++|...+... .. ..+.                                  .............+....+...
T Consensus        78 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  157 (388)
T d1w3ba_          78 KERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKAC  157 (388)
T ss_dssp             HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHH
T ss_pred             hhhccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHH
Confidence            9999999999988642 11 1111                                  1222333444455556666666


Q ss_pred             HHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcc--------hhHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 045814          161 FSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESG--------YLIQAFCNDGKVSEGYELLRQVLEDGLVP  232 (427)
Q Consensus       161 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~  232 (427)
                      +......... +...+..+...+...|+.++|...++..++.+        .+...+...|++++|...+++....... 
T Consensus       158 ~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-  235 (388)
T d1w3ba_         158 YLKAIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN-  235 (388)
T ss_dssp             HHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT-
T ss_pred             HHHhhccCcc-hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh-
Confidence            6666654333 56778888899999999999999999887753        3677888999999999999999886544 


Q ss_pred             CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHH
Q 045814          233 ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIH  312 (427)
Q Consensus       233 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~  312 (427)
                      +...+..+...+.+.|++++|...|++..+... -+..++..+...+...|++++|...++....... .+...+..+..
T Consensus       236 ~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~  313 (388)
T d1w3ba_         236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQP-HFPDAYCNLANALKEKGSVAEAEDCYNTALRLCP-THADSLNNLAN  313 (388)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS-SCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCC-ccchhhhHHHH
Confidence            677888899999999999999999999988753 3567899999999999999999999999877643 37778889999


Q ss_pred             HHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCC
Q 045814          313 GLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE-TTVTYNTLIAGLCLHGR  389 (427)
Q Consensus       313 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~li~~~~~~g~  389 (427)
                      .+.+.|++++|+..+++..+... -+..++..+..+|.+.|++++|...|++..+.  .| +...|..+..+|.+.||
T Consensus       314 ~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l--~P~~~~a~~~lg~~~~~~~D  388 (388)
T d1w3ba_         314 IKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGNTLKEMQD  388 (388)
T ss_dssp             HHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTCC
T ss_pred             HHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCC
Confidence            99999999999999999987632 24678888999999999999999999999875  34 57789999999988775

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=1.4e-12  Score=115.08  Aligned_cols=264  Identities=11%  Similarity=0.011  Sum_probs=117.2

Q ss_pred             HHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHH
Q 045814          115 SLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV  192 (427)
Q Consensus       115 ~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  192 (427)
                      .+.+.|++++|...|++ ....| +..+|..+..+|...|++++|...|.+..+.... +...+..+...+...|++++|
T Consensus        28 ~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~A  106 (323)
T d1fcha_          28 RRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELKPD-NQTALMALAVSFTNESLQRQA  106 (323)
T ss_dssp             HHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccccc-ccccccccccccccccccccc
Confidence            34455555555555554 22233 2445555555555555555555555555544322 344555555555555555555


Q ss_pred             HHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCC-CCCHhh
Q 045814          193 WKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNR-APDNFT  271 (427)
Q Consensus       193 ~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~  271 (427)
                      .+.++.+.....-......         ......   ...+.......+..+...+.+.++.+.+.+..+... ..+..+
T Consensus       107 ~~~~~~~~~~~~~~~~~~~---------~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~  174 (323)
T d1fcha_         107 CEILRDWLRYTPAYAHLVT---------PAEEGA---GGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDV  174 (323)
T ss_dssp             HHHHHHHHHTSTTTGGGCC---------------------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHH
T ss_pred             ccchhhHHHhccchHHHHH---------hhhhhh---hhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhccccccc
Confidence            5555554432110000000         000000   000000011111122223334444445444443322 123344


Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR  351 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  351 (427)
                      +..+...+...|++++|...|++....... +..+|..+...|...|++++|...+++..+... -+..++..+..+|.+
T Consensus       175 ~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~  252 (323)
T d1fcha_         175 QCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAAYRRALELQP-GYIRSRYNLGISCIN  252 (323)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             chhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHHHHHHHHHhh-ccHHHHHHHHHHHHH
Confidence            445555555555555555555555444322 344555555555555555555555555554421 134445555555555


Q ss_pred             cCCHHHHHHHHHHHHHC----------CCCCChhhHHHHHHHHHhcCCHHHH
Q 045814          352 IDNLEEAKRLHKEMLDK----------GYGETTVTYNTLIAGLCLHGRTDEA  393 (427)
Q Consensus       352 ~g~~~~a~~~~~~m~~~----------~~~p~~~~~~~li~~~~~~g~~~~A  393 (427)
                      .|++++|.+.|++.++.          ........|..+-.++...|+.+.+
T Consensus       253 ~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~  304 (323)
T d1fcha_         253 LGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAY  304 (323)
T ss_dssp             HTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGH
T ss_pred             CCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHH
Confidence            56666665555554431          1112233455555555555555443

>d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.59  E-value=8.9e-13  Score=116.47  Aligned_cols=254  Identities=14%  Similarity=0.010  Sum_probs=181.0

Q ss_pred             HHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHH
Q 045814          143 LYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELL  222 (427)
Q Consensus       143 ~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~  222 (427)
                      .....+.+.|++++|...|+++.+..+. +..+|..+..++...|++++|...|++.++.+                   
T Consensus        24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-------------------   83 (323)
T d1fcha_          24 EEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQELLAISALRRCLELK-------------------   83 (323)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-------------------
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-------------------
Confidence            4566788999999999999999987544 67888888888888888888877777665431                   


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCC--------------CCHhhHHHHHHHHHhcCChHHH
Q 045814          223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRA--------------PDNFTYEEVINGLCKSRKRLEA  288 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--------------~~~~~~~~ll~~~~~~~~~~~a  288 (427)
                             .. +...+..+...|...|++++|.+.++........              .+.......+..+...+...+|
T Consensus        84 -------p~-~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a  155 (323)
T d1fcha_          84 -------PD-NQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEV  155 (323)
T ss_dssp             -------TT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHHHHHHHHH
T ss_pred             -------cc-cccccccccccccccccccccccchhhHHHhccchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHH
Confidence                   11 3344444555555555555555555554432110              1111222333445566778889


Q ss_pred             HHHHHHHHhCCC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          289 YRVFNDLKERGY-VPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       289 ~~~~~~m~~~~~-~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      ...|.+..+... .++..++..+...+...|++++|...+++...... -+..+|..+..+|...|++++|.+.|++..+
T Consensus       156 ~~~~~~al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~  234 (323)
T d1fcha_         156 KELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRP-NDYLLWNKLGATLANGNQSEEAVAAYRRALE  234 (323)
T ss_dssp             HHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccccccchhhHHHHHHHHHHhhhhccccccccccc-ccccchhhhhhcccccccchhHHHHHHHHHH
Confidence            999988876532 23566788888999999999999999999988643 2577888999999999999999999999987


Q ss_pred             CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----------CCCCCHhHHHHHHHHHHhcCCCC
Q 045814          368 KGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK----------GIFRDVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       368 ~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~  426 (427)
                      ... -+...|..+..+|.+.|++++|++.|++..+.          ........|..+-.++...|+.+
T Consensus       235 ~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d  302 (323)
T d1fcha_         235 LQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSD  302 (323)
T ss_dssp             HCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGG
T ss_pred             Hhh-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHH
Confidence            632 25778999999999999999999999987762          22334456677767777666654

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.22  E-value=6.2e-09  Score=91.97  Aligned_cols=296  Identities=8%  Similarity=-0.018  Sum_probs=166.3

Q ss_pred             HHHHHHHcCChHHHHHHHHh-cCCCCC------HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCC-c----CHhhHHHH
Q 045814          112 LFDSLVEARAFKVAMDFLDS-TGFSPN------PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVF-G----SIKTWNSA  179 (427)
Q Consensus       112 ll~~~~~~~~~~~a~~~~~~-~~~~~~------~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~-p----~~~~~~~l  179 (427)
                      ....+...|++++|..++++ ....|+      ..++..+..+|...|++++|...|++..+.... +    ....+..+
T Consensus        18 rA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~   97 (366)
T d1hz4a_          18 RAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQ   97 (366)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHH
Confidence            35566788888888888876 233333      235677778888888888888888877653211 1    12234444


Q ss_pred             HHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814          180 LLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       180 l~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  259 (427)
                      ...+...|++..+...+......                   ...............+..+...+...|+++.+...+..
T Consensus        98 ~~~~~~~~~~~~a~~~~~~al~~-------------------~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~  158 (366)
T d1hz4a_          98 SEILFAQGFLQTAWETQEKAFQL-------------------INEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARS  158 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHH-------------------HHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH-------------------hHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHH
Confidence            45555566666555555443321                   11000000011122444555667777777777777776


Q ss_pred             HhhCCC----CCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhC----CCCC--ChhhHHHHHHHHHccCCHHHHHHHHHH
Q 045814          260 MVARNR----APDNFTYEEVINGLCKSRKRLEAYRVFNDLKER----GYVP--DTVMYTTVIHGLCKMGWLGDARKMWFE  329 (427)
Q Consensus       260 m~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~----~~~p--~~~~~~~li~~~~~~g~~~~a~~~~~~  329 (427)
                      ......    ......+......+...++...+...+......    +..+  ....+..+...+...|+.++|...+++
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~  238 (366)
T d1hz4a_         159 GIEVLSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRH  238 (366)
T ss_dssp             HHHHTTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred             HHHHhhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHH
Confidence            655322    112334455556666777777777776655332    1111  122345555666677777787777776


Q ss_pred             HHHcCCCCC---HHHHHHHHHHHhhcCCHHHHHHHHHHHHH----CCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 045814          330 MIHKGLLPN---EYTYNSMIHGYCRIDNLEEAKRLHKEMLD----KGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMA  401 (427)
Q Consensus       330 m~~~~~~p~---~~~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~  401 (427)
                      ........+   ...+..+..++...|++++|...++....    .+..|+ ...+..+...|...|++++|.+.+++..
T Consensus       239 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al  318 (366)
T d1hz4a_         239 TAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL  318 (366)
T ss_dssp             SCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred             HHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence            654422211   23445566677777888888777776653    233332 3456666777778888888887777654


Q ss_pred             HC----CCCC----CHhHHHHHHHHHHhcCCCC
Q 045814          402 QK----GIFR----DVITYNTLIQGYCKEGKIV  426 (427)
Q Consensus       402 ~~----g~~p----~~~~~~~li~~~~~~g~~~  426 (427)
                      +.    |...    ....+..++..+...|+.+
T Consensus       319 ~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~  351 (366)
T d1hz4a_         319 KLANRTGFISHFVIEGEAMAQQLRQLIQLNTLP  351 (366)
T ss_dssp             HHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSC
T ss_pred             HHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCCh
Confidence            42    3221    1223444555555555543

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.20  E-value=5.4e-09  Score=91.01  Aligned_cols=189  Identities=10%  Similarity=0.019  Sum_probs=151.0

Q ss_pred             CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 045814          213 GKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       213 g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                      +..++|..++++......+.+...|...+....+.|+.+.|..+|+.+.+........+|...+..+.+.|+.+.|..+|
T Consensus        78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~  157 (308)
T d2onda1          78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF  157 (308)
T ss_dssp             HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred             cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence            34577888888888654444667888888899999999999999999987654434557899999999999999999999


Q ss_pred             HHHHhCCCCCChhhHHHHHHH-HHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCC-C
Q 045814          293 NDLKERGYVPDTVMYTTVIHG-LCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKG-Y  370 (427)
Q Consensus       293 ~~m~~~~~~p~~~~~~~li~~-~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~  370 (427)
                      .++.+.+.. +...|...... +...|+.+.|..+|+.+.+.. +.+...+...+..+...|+++.|+.+|++..+.. .
T Consensus       158 ~~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~-p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~  235 (308)
T d2onda1         158 KKAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL  235 (308)
T ss_dssp             HHHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred             HHHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence            999887544 33344333332 345689999999999999873 3467789999999999999999999999988763 3


Q ss_pred             CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          371 GET--TVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       371 ~p~--~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      .|+  ...|...+..-...|+.+.+.++++++.+.
T Consensus       236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~  270 (308)
T d2onda1         236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA  270 (308)
T ss_dssp             CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred             ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence            333  457899998888999999999999998774

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=9.3e-09  Score=89.68  Aligned_cols=197  Identities=7%  Similarity=-0.005  Sum_probs=107.5

Q ss_pred             HhhHHHHHHHHHHcCChHHHHHHHHh-cCCCCC-HHhHHHHHHHHHhcC-ChhHHHHHHHHHHhcCCCcCHhhHHHHHHH
Q 045814          106 LVSCNVLFDSLVEARAFKVAMDFLDS-TGFSPN-PNSLELYIQCLCESG-LIEEAFCAFSKLKEMGVFGSIKTWNSALLG  182 (427)
Q Consensus       106 ~~~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~-~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~  182 (427)
                      ...++.+-..+.+.+.+++|++++++ ....|+ ..+|+....++...| ++++|++.+++..+.... +..+|+.+...
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~-~~~a~~~~~~~  121 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPK-NYQVWHHRRVL  121 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHh-hhhHHHHHhHH
Confidence            44555555666666677777777665 333443 445666666666654 367777777766665444 55566655555


Q ss_pred             HHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhh
Q 045814          183 CIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVA  262 (427)
Q Consensus       183 ~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~  262 (427)
                      +.+.|++++|+.                          .++++...... +...|..+...+...|++++|.+.++.+++
T Consensus       122 ~~~l~~~~eAl~--------------------------~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1         122 VEWLRDPSQELE--------------------------FIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             HHHHTCCTTHHH--------------------------HHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHhhccHHHHHH--------------------------HHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            544444444433                          33333333222 555666666666666666666666666666


Q ss_pred             CCCCCCHhhHHHHHHHHHhcCC------hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          263 RNRAPDNFTYEEVINGLCKSRK------RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       263 ~~~~~~~~~~~~ll~~~~~~~~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .++. +...|+.+...+.+.+.      +++|...+....+.... +...|+.+...+.. ...+++...++...+.
T Consensus       175 ~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P~-~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l  248 (315)
T d2h6fa1         175 EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQD-RGLSKYPNLLNQLLDL  248 (315)
T ss_dssp             HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTT-TCGGGCHHHHHHHHHH
T ss_pred             HCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCCC-chHHHHHHHHHHHh-cChHHHHHHHHHHHHh
Confidence            5422 44455555444444443      34566666665554332 44555544444333 2345555555555443

>d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Protein farnesyltransferase alpha-subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.12  E-value=2.4e-08  Score=86.98  Aligned_cols=249  Identities=10%  Similarity=0.063  Sum_probs=178.9

Q ss_pred             HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhH
Q 045814          138 PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSE  217 (427)
Q Consensus       138 ~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~  217 (427)
                      ...|+.+...+.+.+.+++|+++++++.+..+. +...|+....++...|.                         ++++
T Consensus        43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~-~~~a~~~r~~~l~~l~~-------------------------~~~e   96 (315)
T d2h6fa1          43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAA-NYTVWHFRRVLLKSLQK-------------------------DLHE   96 (315)
T ss_dssp             HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTC-------------------------CHHH
T ss_pred             HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCC-ChHHHHHHHHHHHHhCc-------------------------CHHH
Confidence            457888888899999999999999999987555 66677776666555432                         3455


Q ss_pred             HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHh
Q 045814          218 GYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKE  297 (427)
Q Consensus       218 a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~  297 (427)
                      |+..++........ +..+|..+...+.+.|++++|++.++++.+.... +...|..+...+.+.|++++|...++.+.+
T Consensus        97 al~~~~~al~~~p~-~~~a~~~~~~~~~~l~~~~eAl~~~~kal~~dp~-n~~a~~~~~~~~~~~~~~~~Al~~~~~al~  174 (315)
T d2h6fa1          97 EMNYITAIIEEQPK-NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLK  174 (315)
T ss_dssp             HHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHh-hhhHHHHHhHHHHhhccHHHHHHHHhhhhhhhhc-chHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence            55555555555444 7889999999999999999999999999987533 678999999999999999999999999998


Q ss_pred             CCCCCChhhHHHHHHHHHccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC
Q 045814          298 RGYVPDTVMYTTVIHGLCKMGW------LGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG  371 (427)
Q Consensus       298 ~~~~p~~~~~~~li~~~~~~g~------~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~  371 (427)
                      ..+. +...|+.+...+.+.+.      +++|+..+.++.+... -+...|+.+...+... ..+++.+.++...+....
T Consensus       175 ~~p~-n~~a~~~r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~~~-~~~~~~~~~~~~~~l~~~  251 (315)
T d2h6fa1         175 EDVR-NNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQDR-GLSKYPNLLNQLLDLQPS  251 (315)
T ss_dssp             HCTT-CHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHTTT-CGGGCHHHHHHHHHHTTT
T ss_pred             HCCc-cHHHHHHHHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHHhc-ChHHHHHHHHHHHHhCCC
Confidence            8655 67788877766666554      6789999999888742 3667777766665544 467788888877664322


Q ss_pred             C-ChhhHHHHHHHHHhc--C-------CHHHHHHHHHHHHHCCCCCCHh-HHHHHHHH
Q 045814          372 E-TTVTYNTLIAGLCLH--G-------RTDEAYHLFEEMAQKGIFRDVI-TYNTLIQG  418 (427)
Q Consensus       372 p-~~~~~~~li~~~~~~--g-------~~~~A~~~~~~m~~~g~~p~~~-~~~~li~~  418 (427)
                      + +...+..+...|...  +       .+++|.++++.+... +.|-.. -|..+.+.
T Consensus       252 ~~~~~~~~~l~~~y~~~~~~~~~~~~~~~~ka~~l~~~l~~~-~DpiR~~yw~~~~~~  308 (315)
T d2h6fa1         252 HSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE-KDTIRKEYWRYIGRS  308 (315)
T ss_dssp             CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT-TCGGGHHHHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHH
Confidence            2 355666777776543  2       245666666665543 333322 35444443

>d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: HAT/Suf repeat
domain: Cleavage stimulation factor 77 kDa subunit CSTF3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.06  E-value=2e-08  Score=87.29  Aligned_cols=175  Identities=12%  Similarity=0.099  Sum_probs=138.1

Q ss_pred             ChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 045814          249 NFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWF  328 (427)
Q Consensus       249 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~  328 (427)
                      ..++|..+|++..+...+.+...|...+..+.+.|+.+.|..+|+++.+.........|...+..+.+.|+.+.|..+|+
T Consensus        79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~  158 (308)
T d2onda1          79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK  158 (308)
T ss_dssp             HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred             chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence            35788999999887655556678888889999999999999999999876544334578999999999999999999999


Q ss_pred             HHHHcCCCCCHHHHHHHHH-HHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CC
Q 045814          329 EMIHKGLLPNEYTYNSMIH-GYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG-IF  406 (427)
Q Consensus       329 ~m~~~~~~p~~~~~~~li~-~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~  406 (427)
                      ++.+.+.. +...|..... -+...|+.+.|..+|+.+.+. .+.+...|...++.+.+.|+.+.|..+|++..+.. ..
T Consensus       159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~  236 (308)
T d2onda1         159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLP  236 (308)
T ss_dssp             HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSC
T ss_pred             HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCC
Confidence            99887533 3334433333 234568999999999999986 44468899999999999999999999999988864 44


Q ss_pred             CC--HhHHHHHHHHHHhcCCC
Q 045814          407 RD--VITYNTLIQGYCKEGKI  425 (427)
Q Consensus       407 p~--~~~~~~li~~~~~~g~~  425 (427)
                      |+  ...|...+.--.+.|+.
T Consensus       237 ~~~~~~iw~~~~~fE~~~G~~  257 (308)
T d2onda1         237 PEKSGEIWARFLAFESNIGDL  257 (308)
T ss_dssp             GGGCHHHHHHHHHHHHHHSCH
T ss_pred             hHHHHHHHHHHHHHHHHcCCH
Confidence            43  35788877776777764

>d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Transcription factor MalT domain III
domain: Transcription factor MalT domain III
species: Escherichia coli [TaxId: 562]

Probab=99.03  E-value=2.7e-07  Score=81.04  Aligned_cols=297  Identities=11%  Similarity=-0.008  Sum_probs=185.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHhhcCCCCCC---HhhHHHHHHHHHHcCChHHHHHHHHhc----CCCCC----HHhHHHHH
Q 045814           77 REFLKQQNNVLLSIRFFQWLHSHYGFSPD---LVSCNVLFDSLVEARAFKVAMDFLDST----GFSPN----PNSLELYI  145 (427)
Q Consensus        77 ~~~l~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~----~~~~~~li  145 (427)
                      ..+....++++.|+++++.......-.++   ...+..+...+...|++++|...+++.    ...++    ..++..+.
T Consensus        19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~   98 (366)
T d1hz4a_          19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS   98 (366)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence            34556789999999999988654211111   346777888999999999999999852    11122    34566777


Q ss_pred             HHHHhcCChhHHHHHHHHHHhc----CCCcC---HhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814          146 QCLCESGLIEEAFCAFSKLKEM----GVFGS---IKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG  218 (427)
Q Consensus       146 ~~~~~~~~~~~A~~~~~~m~~~----g~~p~---~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a  218 (427)
                      ..+...|++..+...+......    +....   ...+..+...+...|+++.+...+......                
T Consensus        99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~----------------  162 (366)
T d1hz4a_          99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEV----------------  162 (366)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH----------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHH----------------
Confidence            8899999999999999876542    11111   123333444455555555554444433221                


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhC----CCCC--CHhhHHHHHHHHHhcCChHHHHHHH
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVAR----NRAP--DNFTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~~~--~~~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                            ....+......++......+...++...+...+.+....    +..+  ....+..+...+...|++++|...+
T Consensus       163 ------~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~  236 (366)
T d1hz4a_         163 ------LSSYQPQQQLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWL  236 (366)
T ss_dssp             ------TTTSCGGGGHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ------hhhhhhhhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHH
Confidence                  001112223345555666677788888887777655432    1111  1234556667778889999999988


Q ss_pred             HHHHhCCCCC---ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHH
Q 045814          293 NDLKERGYVP---DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK----GLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKE  364 (427)
Q Consensus       293 ~~m~~~~~~p---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~  364 (427)
                      ....+.....   ....+..+..++...|++++|...++++...    +..|+ ..++..+...|...|++++|.+.+++
T Consensus       237 ~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~  316 (366)
T d1hz4a_         237 RHTAKPEFANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLD  316 (366)
T ss_dssp             HHSCCCCCTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred             HHHHHhccccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence            8876543322   2334556778888899999999998887632    33343 34677778889999999999999988


Q ss_pred             HHHC----CCCC----ChhhHHHHHHHHHhcCCHHHHHH
Q 045814          365 MLDK----GYGE----TTVTYNTLIAGLCLHGRTDEAYH  395 (427)
Q Consensus       365 m~~~----~~~p----~~~~~~~li~~~~~~g~~~~A~~  395 (427)
                      ..+.    |...    ....+..++..+...++.+++.+
T Consensus       317 Al~l~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~e~e~  355 (366)
T d1hz4a_         317 ALKLANRTGFISHFVIEGEAMAQQLRQLIQLNTLPELEQ  355 (366)
T ss_dssp             HHHHHHHHCCCHHHHTTHHHHHHHHHHHHHTTCSCHHHH
T ss_pred             HHHHhhhcCcHHHHHHHHHHHHHHHHHHHhcCCChHHHH
Confidence            7543    2211    12234445556666666665543

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.95  E-value=1e-08  Score=86.61  Aligned_cols=190  Identities=14%  Similarity=-0.003  Sum_probs=124.0

Q ss_pred             HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCCh
Q 045814          206 IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKR  285 (427)
Q Consensus       206 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~  285 (427)
                      ...|.+.|++++|++.|++.+...+. +..+|+.+..++.+.|++++|...|++..+.... +..++..+...|...|++
T Consensus        44 G~~y~~~g~~~~A~~~~~~al~l~p~-~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~  121 (259)
T d1xnfa_          44 GVLYDSLGLRALARNDFSQALAIRPD-MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYYGGRD  121 (259)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHHhhccCCC-CHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHHHhhH
Confidence            34455666666677777766665443 6788999999999999999999999999887533 456788888999999999


Q ss_pred             HHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC----HHHHHHH
Q 045814          286 LEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN----LEEAKRL  361 (427)
Q Consensus       286 ~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~----~~~a~~~  361 (427)
                      ++|...|+...+.... +......+..++.+.+..+.+..+.........  +...++ ++..+.....    .+.+...
T Consensus       122 ~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~-~~~~~~~~~~~~~~~~~~~~~  197 (259)
T d1xnfa_         122 KLAQDDLLAFYQDDPN-DPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK--EQWGWN-IVEFYLGNISEQTLMERLKAD  197 (259)
T ss_dssp             HHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC--CSTHHH-HHHHHTTSSCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhccc-cHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch--hhhhhh-HHHHHHHHHHHHHHHHHHHHH
Confidence            9999999998876432 444444444555556665566565555555422  222222 2233222222    2222222


Q ss_pred             HHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          362 HKEMLDKGYGE-TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       362 ~~~m~~~~~~p-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +......  .| ...+|..+...|...|++++|.+.|++....
T Consensus       198 ~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~  238 (259)
T d1xnfa_         198 ATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN  238 (259)
T ss_dssp             CCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence            2211111  11 2346777888999999999999999998875

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.92  E-value=5.1e-09  Score=92.31  Aligned_cols=192  Identities=8%  Similarity=-0.045  Sum_probs=109.9

Q ss_pred             ChhHHHHHHHHHHHCCCCCCHHHHH-HHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHH
Q 045814          214 KVSEGYELLRQVLEDGLVPENTAFN-KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       214 ~~~~a~~~~~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                      ++++|...+.++...... +...+. .....+...+.+++|...++.+...++. +...|+.+...+.+.|++++|...+
T Consensus       124 ~~~~a~~~~~~al~~~~~-~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~  201 (334)
T d1dcea1         124 NWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQG  201 (334)
T ss_dssp             CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred             cHHHHHHHHHHHHhhCch-hhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHH
Confidence            345555555555554332 334433 3334555567777777777776666432 5566777777777777776665544


Q ss_pred             HHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCC
Q 045814          293 NDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGE  372 (427)
Q Consensus       293 ~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p  372 (427)
                      ....+.  .|+   .......+...+..+++...+....... +++...+..+...+...|+.++|...+.+..+... .
T Consensus       202 ~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~  274 (334)
T d1dcea1         202 RLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENK-W  274 (334)
T ss_dssp             SSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-H
T ss_pred             HHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-h
Confidence            433322  011   1112233444555666666666666553 23344555556666667777777777777765421 1


Q ss_pred             ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCHh-HHHHHH
Q 045814          373 TTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGIFRDVI-TYNTLI  416 (427)
Q Consensus       373 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~li  416 (427)
                      +...|..+...|...|++++|.+.+++..+.  .|+.. -|..|.
T Consensus       275 ~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~  317 (334)
T d1dcea1         275 CLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR  317 (334)
T ss_dssp             HHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHH
Confidence            4566667777777788888888888877764  45433 334343

>d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Protein prenylyltransferase
family: Protein prenylyltransferase
domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=1.2e-08  Score=89.91  Aligned_cols=221  Identities=6%  Similarity=-0.070  Sum_probs=142.0

Q ss_pred             hhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCC--hhHHHHHHHHHHhcch---------hHHHHHhcCChhHHHHHH
Q 045814          154 IEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDR--TDLVWKLYHDLIESGY---------LIQAFCNDGKVSEGYELL  222 (427)
Q Consensus       154 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~--~~~a~~~~~~~~~~~~---------l~~~~~~~g~~~~a~~~~  222 (427)
                      +++|+.+++...+.... +...|..+..++...+.  .++|...++.+.+.+.         ....+...+..++|+..+
T Consensus        89 ~~~al~~~~~~l~~~pk-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~  167 (334)
T d1dcea1          89 VKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT  167 (334)
T ss_dssp             HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhCCC-cHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHH
Confidence            44555555555544322 44444444444444332  4455555555544311         223445567788888888


Q ss_pred             HHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCC
Q 045814          223 RQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVP  302 (427)
Q Consensus       223 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p  302 (427)
                      +.+....+. +...|+.+...+.+.|++++|...+......  .|+   .......+...+..+++...+........ +
T Consensus       168 ~~~i~~~p~-~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~---~~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~  240 (334)
T d1dcea1         168 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLK---ELELVQNAFFTDPNDQSAWFYHRWLLGRA-E  240 (334)
T ss_dssp             HTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHH---HHHHHHHHHHHCSSCSHHHHHHHHHHSCC-C
T ss_pred             HHHHHcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHH---HHHHHHHHHHhcchhHHHHHHHHHHHhCc-c
Confidence            877776554 7888888889999999888776555433222  111   12233445666778888888888876643 2


Q ss_pred             ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCC-hhhHHHHH
Q 045814          303 DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGET-TVTYNTLI  381 (427)
Q Consensus       303 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li  381 (427)
                      +...+..+...+...|+.++|...+.+...... -+..++..+..+|...|+.++|.+.++...+.  .|+ ..-|..|.
T Consensus       241 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~  317 (334)
T d1dcea1         241 PLFRCELSVEKSTVLQSELESCKELQELEPENK-WCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLR  317 (334)
T ss_dssp             CSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCH-HHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCc-hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHH
Confidence            555666777788888999999999988876632 24567788888999999999999999999885  454 34555554


Q ss_pred             HHHH
Q 045814          382 AGLC  385 (427)
Q Consensus       382 ~~~~  385 (427)
                      ..+.
T Consensus       318 ~~~~  321 (334)
T d1dcea1         318 SKFL  321 (334)
T ss_dssp             HHHH
T ss_pred             HHHh
Confidence            4443

>d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Lipoprotein NlpI
species: Escherichia coli [TaxId: 562]

Probab=98.83  E-value=6.2e-08  Score=81.58  Aligned_cols=89  Identities=12%  Similarity=-0.017  Sum_probs=47.5

Q ss_pred             hHHHHHHHHHHcCChHHHHHHHHh-cCCCC-CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHH
Q 045814          108 SCNVLFDSLVEARAFKVAMDFLDS-TGFSP-NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK  185 (427)
Q Consensus       108 ~~~~ll~~~~~~~~~~~a~~~~~~-~~~~~-~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~  185 (427)
                      +|..+..+|.+.|++++|.+.|++ ....| ++.+|+.+..+|.+.|++++|++.|++..+.... +..++..+..++..
T Consensus        39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~  117 (259)
T d1xnfa_          39 LLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPT-YNYAHLNRGIALYY  117 (259)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHHHhh-hhhhHHHHHHHHHH
Confidence            455555556666666666666655 22333 3455666666666666666666666666654332 33444444444444


Q ss_pred             cCChhHHHHHHH
Q 045814          186 IDRTDLVWKLYH  197 (427)
Q Consensus       186 ~~~~~~a~~~~~  197 (427)
                      .|++++|...|+
T Consensus       118 ~g~~~~A~~~~~  129 (259)
T d1xnfa_         118 GGRDKLAQDDLL  129 (259)
T ss_dssp             TTCHHHHHHHHH
T ss_pred             HhhHHHHHHHHH
Confidence            444444444443

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.6e-06  Score=66.93  Aligned_cols=123  Identities=11%  Similarity=-0.039  Sum_probs=73.2

Q ss_pred             HHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCH
Q 045814          241 ISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWL  320 (427)
Q Consensus       241 i~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  320 (427)
                      ...+...|+++.|.+.|.++    .+|+..+|..+...|...|++++|++.|++..+.... +...|..+..+|.+.|++
T Consensus        12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~   86 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKY   86 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccH
Confidence            34455667777777766643    2345566666777777777777777777777665443 555666677777777777


Q ss_pred             HHHHHHHHHHHHcCCCCC---------------HHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          321 GDARKMWFEMIHKGLLPN---------------EYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       321 ~~a~~~~~~m~~~~~~p~---------------~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      ++|...|++.........               ..++..+..++.+.|++++|.+.+....+.
T Consensus        87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~  149 (192)
T d1hh8a_          87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM  149 (192)
T ss_dssp             HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence            777777776655321100               122334444555556666666655555544

>d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.2e-06  Score=67.26  Aligned_cols=151  Identities=12%  Similarity=0.059  Sum_probs=102.8

Q ss_pred             HHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHH
Q 045814          113 FDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLV  192 (427)
Q Consensus       113 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a  192 (427)
                      ...+...|+++.|++.|++.. .|++.+|..+..+|...|++++|++.|++..+.... +...|..+..++.+.|++++|
T Consensus        12 g~~~~~~~d~~~Al~~~~~i~-~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~-~~~a~~~~g~~~~~~g~~~~A   89 (192)
T d1hh8a_          12 GVLAADKKDWKGALDAFSAVQ-DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKH-LAVAYFQRGMLYYQTEKYDLA   89 (192)
T ss_dssp             HHHHHHTTCHHHHHHHHHTSS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHHHHCCCHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhh-hhhhHHHHHHHHHhhccHHHH
Confidence            345678899999999998864 678888889999999999999999999999987655 788888899999999999999


Q ss_pred             HHHHHHHHhcc---hhHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC
Q 045814          193 WKLYHDLIESG---YLIQAFCNDGKVSEGYELLRQVLEDGLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD  268 (427)
Q Consensus       193 ~~~~~~~~~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~  268 (427)
                      ...|++.+...   ..+ .+...|              ....+ ...++..+..++.+.|++++|.+.+.........++
T Consensus        90 ~~~~~kAl~~~~~n~~~-~~~~~~--------------~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~~~  154 (192)
T d1hh8a_          90 IKDLKEALIQLRGNQLI-DYKILG--------------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEPR  154 (192)
T ss_dssp             HHHHHHHHHTTTTCSEE-ECGGGT--------------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSGG
T ss_pred             HHHHHHHHHhCccCchH-HHHHhh--------------hhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCcc
Confidence            88888776420   000 000000              00000 123444555667777777777777777666655554


Q ss_pred             HhhHHHHHHHHH
Q 045814          269 NFTYEEVINGLC  280 (427)
Q Consensus       269 ~~~~~~ll~~~~  280 (427)
                      .......+..+.
T Consensus       155 ~~~~~~Al~~~~  166 (192)
T d1hh8a_         155 HSKIDKAMECVW  166 (192)
T ss_dssp             GGHHHHHHHHHH
T ss_pred             hHHHHHHHHHHH
Confidence            444444444443

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.57  E-value=1.1e-06  Score=75.23  Aligned_cols=195  Identities=10%  Similarity=0.001  Sum_probs=125.8

Q ss_pred             HHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChhHHHHHHHHHhhC----CC-CCCHhhHHHHHH
Q 045814          208 AFCNDGKVSEGYELLRQVLED----GLVP-ENTAFNKLISRFCEKKNFGRVSELLHTMVAR----NR-APDNFTYEEVIN  277 (427)
Q Consensus       208 ~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----~~-~~~~~~~~~ll~  277 (427)
                      .|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|.+.+++..+.    |. .....++..+..
T Consensus        46 ~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~  125 (290)
T d1qqea_          46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE  125 (290)
T ss_dssp             HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHH
Confidence            344555555555555544431    1111 2347888888999999999999999876543    11 111345666666


Q ss_pred             HHHh-cCChHHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCH------HHHHHH
Q 045814          278 GLCK-SRKRLEAYRVFNDLKER----GYVP-DTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNE------YTYNSM  345 (427)
Q Consensus       278 ~~~~-~~~~~~a~~~~~~m~~~----~~~p-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~~~~~l  345 (427)
                      .|.. .|++++|...|.+..+.    +..+ -..+|..+...+...|++++|...++++.........      ..+...
T Consensus       126 ~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~  205 (290)
T d1qqea_         126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK  205 (290)
T ss_dssp             HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred             hHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHH
Confidence            6644 69999999999887532    2211 1346778889999999999999999998876322111      123445


Q ss_pred             HHHHhhcCCHHHHHHHHHHHHHCCCC-CC---hhhHHHHHHHHHh--cCCHHHHHHHHHHHHH
Q 045814          346 IHGYCRIDNLEEAKRLHKEMLDKGYG-ET---TVTYNTLIAGLCL--HGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       346 i~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~~--~g~~~~A~~~~~~m~~  402 (427)
                      +..+...|+++.|.+.+++..+.... ++   ......++.++-.  .+.+++|+..|+++.+
T Consensus       206 ~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~~  268 (290)
T d1qqea_         206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMR  268 (290)
T ss_dssp             HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred             HHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh
Confidence            55677889999999999998765321 11   2345667777655  3457888888876553

>d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Vesicular transport protein sec17
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.56  E-value=5.4e-06  Score=70.75  Aligned_cols=203  Identities=10%  Similarity=0.001  Sum_probs=123.3

Q ss_pred             HHHHHHhcCChhHHHHHHHHHHhc----CCCc-CHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHH
Q 045814          144 YIQCLCESGLIEEAFCAFSKLKEM----GVFG-SIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEG  218 (427)
Q Consensus       144 li~~~~~~~~~~~A~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a  218 (427)
                      ....|...|++++|.+.|.+..+.    +-.+ -..+|..+..+|.+.|++++|...++....      .+...|+...+
T Consensus        43 aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~------~~~~~~~~~~~  116 (290)
T d1qqea_          43 AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQ------IFTHRGQFRRG  116 (290)
T ss_dssp             HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH------HHHHTTCHHHH
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhH------HhhhcccchhH
Confidence            356777888888888888877653    1111 235677777777788888887777765543      22333333332


Q ss_pred             HHHHHHHHHCCCCCCHHHHHHHHHHHH-ccCChhHHHHHHHHHhhC----CCCC-CHhhHHHHHHHHHhcCChHHHHHHH
Q 045814          219 YELLRQVLEDGLVPENTAFNKLISRFC-EKKNFGRVSELLHTMVAR----NRAP-DNFTYEEVINGLCKSRKRLEAYRVF  292 (427)
Q Consensus       219 ~~~~~~~~~~~~~~~~~~~~~li~~~~-~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~  292 (427)
                                     ..++..+...|. ..|++++|.+.+++..+.    +..+ -..++..+...|...|++++|...|
T Consensus       117 ---------------~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~  181 (290)
T d1qqea_         117 ---------------ANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIY  181 (290)
T ss_dssp             ---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             ---------------HHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHH
Confidence                           234444555553 458888888888766532    1111 1245777888888899999999999


Q ss_pred             HHHHhCCCCCCh------hhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHhh--cCCHHHHHH
Q 045814          293 NDLKERGYVPDT------VMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PN---EYTYNSMIHGYCR--IDNLEEAKR  360 (427)
Q Consensus       293 ~~m~~~~~~p~~------~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~---~~~~~~li~~~~~--~g~~~~a~~  360 (427)
                      +++.........      ..+...+..+...|+++.|...+++..+.... ++   ......++.++-.  .+.+++|..
T Consensus       182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~  261 (290)
T d1qqea_         182 SKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCK  261 (290)
T ss_dssp             HHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHH
T ss_pred             HHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence            888765322111      12334455666788899999888888765321 11   2234556666544  234677777


Q ss_pred             HHHHHHH
Q 045814          361 LHKEMLD  367 (427)
Q Consensus       361 ~~~~m~~  367 (427)
                      .|+.+.+
T Consensus       262 ~y~~~~~  268 (290)
T d1qqea_         262 EFDNFMR  268 (290)
T ss_dssp             HHTTSSC
T ss_pred             HHHHHhh
Confidence            7765443

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=7.4e-06  Score=59.17  Aligned_cols=86  Identities=16%  Similarity=0.093  Sum_probs=34.7

Q ss_pred             HHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHH
Q 045814          279 LCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       279 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a  358 (427)
                      +.+.|++++|+..|++..+.... +...|..+..+|...|++++|+..+++..+.+. .+...|..+..++...|++++|
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHHH
Confidence            33444444444444444333222 333344444444444444444444444443321 1333344444444444444444


Q ss_pred             HHHHHHHH
Q 045814          359 KRLHKEML  366 (427)
Q Consensus       359 ~~~~~~m~  366 (427)
                      ...|+...
T Consensus        91 ~~~~~~a~   98 (117)
T d1elwa_          91 KRTYEEGL   98 (117)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            44444444

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=6e-06  Score=63.43  Aligned_cols=91  Identities=12%  Similarity=0.051  Sum_probs=61.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCH
Q 045814          276 INGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNL  355 (427)
Q Consensus       276 l~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~  355 (427)
                      .+.|.+.|++++|...|.+..+.... +...|..+..+|...|++++|...|+++.+... -+..+|..+..+|...|++
T Consensus        17 gn~~~~~~~y~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p-~~~~a~~~~g~~~~~~g~~   94 (159)
T d1a17a_          17 ANDYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELDK-KYIKGYYRRAASNMALGKF   94 (159)
T ss_dssp             HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCH
T ss_pred             HHHHHHcCCHHHHHHHhhhccccchh-hhhhhhhhHHHHHhccccchHHHHHHHHHHHcc-cchHHHHHHHHHHHHcCCH
Confidence            44566777777777777777666433 556666777777777777777777777776532 2456677777777777777


Q ss_pred             HHHHHHHHHHHHC
Q 045814          356 EEAKRLHKEMLDK  368 (427)
Q Consensus       356 ~~a~~~~~~m~~~  368 (427)
                      ++|...+++....
T Consensus        95 ~eA~~~~~~a~~~  107 (159)
T d1a17a_          95 RAALRDYETVVKV  107 (159)
T ss_dssp             HHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHc
Confidence            7777777777665

>d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.36  E-value=6.4e-06  Score=59.52  Aligned_cols=88  Identities=10%  Similarity=0.085  Sum_probs=40.4

Q ss_pred             HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHH
Q 045814          209 FCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEA  288 (427)
Q Consensus       209 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a  288 (427)
                      +.+.|++++|+..|++.+...+. +...|..+..++...|++++|+..+....+.+. .+...|..+..++...|++++|
T Consensus        13 ~~~~g~~~eAi~~~~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~g~~~~~~~~~~~A   90 (117)
T d1elwa_          13 ALSVGNIDDALQCYSEAIKLDPH-NHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKP-DWGKGYSRKAAALEFLNRFEEA   90 (117)
T ss_dssp             HHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHH
T ss_pred             HHHcCCHHHHHHHHHHHHhcCCc-chhhhhcccccccccccccccchhhhhHHHhcc-chhhHHHHHHHHHHHccCHHHH
Confidence            34444444444444444443322 344444444444445555555555544444432 2334444444444444555555


Q ss_pred             HHHHHHHHhC
Q 045814          289 YRVFNDLKER  298 (427)
Q Consensus       289 ~~~~~~m~~~  298 (427)
                      +..|++..+.
T Consensus        91 ~~~~~~a~~~  100 (117)
T d1elwa_          91 KRTYEEGLKH  100 (117)
T ss_dssp             HHHHHHHHTT
T ss_pred             HHHHHHHHHh
Confidence            5444444443

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.34  E-value=0.00036  Score=57.94  Aligned_cols=113  Identities=13%  Similarity=-0.084  Sum_probs=53.4

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLE  356 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~  356 (427)
                      ...+...+......   .+...+..+...|..    ..+...+...++...+.|   +......+...|..    ..+.+
T Consensus       126 ~~~a~~~~~~~~~~---~~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~  199 (265)
T d1ouva_         126 FKKAVEYFTKACDL---NDGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFK  199 (265)
T ss_dssp             HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHH
T ss_pred             hHHHHHHhhhhhcc---cccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchh
Confidence            33444444444333   133344444444443    233445555555555443   23333333333332    34566


Q ss_pred             HHHHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC
Q 045814          357 EAKRLHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGIF  406 (427)
Q Consensus       357 ~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~  406 (427)
                      +|...|+...+.|   ++..+..|...|..    ..+.++|.+.|++..+.|..
T Consensus       200 ~A~~~~~~aa~~g---~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         200 EALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             HHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             hhhhhHhhhhccc---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence            6666666666554   34444455555543    23556666666666555543

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.33  E-value=5e-06  Score=66.48  Aligned_cols=100  Identities=17%  Similarity=0.023  Sum_probs=85.7

Q ss_pred             CCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 045814          267 PDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMI  346 (427)
Q Consensus       267 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  346 (427)
                      |+...+....+.|.+.|++++|+..|.+..+.... +...|..+..+|.+.|++++|+..+++..+... -+..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~-~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p-~~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPL-VAVYYTNRALCYLKMQQPEQALADCRRALELDG-QSVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCT-TCHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCC-CcHHHHHHHH
Confidence            56677778889999999999999999998887644 778899999999999999999999999987632 2467888899


Q ss_pred             HHHhhcCCHHHHHHHHHHHHHC
Q 045814          347 HGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       347 ~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .+|...|++++|...|+...+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999988764

>d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Protein phosphatase 5
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=1.3e-05  Score=61.41  Aligned_cols=94  Identities=9%  Similarity=0.009  Sum_probs=71.3

Q ss_pred             HHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccC
Q 045814          239 KLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMG  318 (427)
Q Consensus       239 ~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g  318 (427)
                      .....|.+.|++++|...|++..+... -+...|..+...|...|++++|...|++..+.... +..+|..+..++...|
T Consensus        15 ~~gn~~~~~~~y~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g   92 (159)
T d1a17a_          15 TQANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALG   92 (159)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHcCCHHHHHHHhhhccccch-hhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcC
Confidence            345567788888888888888777653 25677778888888888888888888888776543 5567888888888888


Q ss_pred             CHHHHHHHHHHHHHcC
Q 045814          319 WLGDARKMWFEMIHKG  334 (427)
Q Consensus       319 ~~~~a~~~~~~m~~~~  334 (427)
                      ++++|...+++.....
T Consensus        93 ~~~eA~~~~~~a~~~~  108 (159)
T d1a17a_          93 KFRAALRDYETVVKVK  108 (159)
T ss_dssp             CHHHHHHHHHHHHHHS
T ss_pred             CHHHHHHHHHHHHHcC
Confidence            8888888888887764

>d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.30  E-value=5.2e-06  Score=66.38  Aligned_cols=100  Identities=10%  Similarity=-0.028  Sum_probs=89.1

Q ss_pred             CCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHH
Q 045814          232 PENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVI  311 (427)
Q Consensus       232 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li  311 (427)
                      |+...+......+.+.|++++|+..|.+.++..+ .+...|..+..+|.+.|++++|...|++..+.... +..+|..+.
T Consensus         2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p-~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg   79 (201)
T d2c2la1           2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG   79 (201)
T ss_dssp             CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence            6777888889999999999999999999988753 36788999999999999999999999999877543 577899999


Q ss_pred             HHHHccCCHHHHHHHHHHHHHc
Q 045814          312 HGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      .+|.+.|++++|...|+++.+.
T Consensus        80 ~~~~~l~~~~~A~~~~~~al~l  101 (201)
T d2c2la1          80 QCQLEMESYDEAIANLQRAYSL  101 (201)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHCCCHHHHHHHHHHHHHh
Confidence            9999999999999999998764

>d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein C (HcpC)
species: Helicobacter pylori [TaxId: 210]

Probab=98.28  E-value=0.00068  Score=56.21  Aligned_cols=220  Identities=10%  Similarity=-0.017  Sum_probs=158.1

Q ss_pred             CHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHH----cCChhHHHHHHHHHHhcch------hH
Q 045814          137 NPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIK----IDRTDLVWKLYHDLIESGY------LI  206 (427)
Q Consensus       137 ~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~------l~  206 (427)
                      |+..+..|...+.+.+++++|++.|++..+.|   +...+..|...|..    ..+...|...+......+.      +.
T Consensus         1 ~p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~   77 (265)
T d1ouva_           1 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLG   77 (265)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred             CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhccc
Confidence            56777888888889999999999999998876   55666667777776    6688899999988877642      22


Q ss_pred             HHHH----hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChhHHHHHHHHHhhCCCCCCHhhHHHHHHH
Q 045814          207 QAFC----NDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCE----KKNFGRVSELLHTMVARNRAPDNFTYEEVING  278 (427)
Q Consensus       207 ~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~  278 (427)
                      ..+.    ..++.+.|...++.....|..   .....+...+..    ......+...+......+   +...+..+...
T Consensus        78 ~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~~L~~~  151 (265)
T d1ouva_          78 NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL  151 (265)
T ss_dssp             HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred             cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc---ccchhhhhhhh
Confidence            2222    256788899999998887653   233333333332    444667777777766553   56677778777


Q ss_pred             HHh----cCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          279 LCK----SRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       279 ~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      |..    ..+...+...++...+.|   +......+...|..    ..+.++|..+|.+..+.|   +...+..|...|.
T Consensus       152 ~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~LG~~y~  225 (265)
T d1ouva_         152 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY  225 (265)
T ss_dssp             HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred             hccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---CHHHHHHHHHHHH
Confidence            775    456778888888887765   55566556655554    568999999999999987   4556666666665


Q ss_pred             h----cCCHHHHHHHHHHHHHCCCC
Q 045814          351 R----IDNLEEAKRLHKEMLDKGYG  371 (427)
Q Consensus       351 ~----~g~~~~a~~~~~~m~~~~~~  371 (427)
                      +    ..+.++|.+.|++..+.|..
T Consensus       226 ~G~g~~~n~~~A~~~~~kAa~~g~~  250 (265)
T d1ouva_         226 NGEGVTRNEKQAIENFKKGCKLGAK  250 (265)
T ss_dssp             TTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred             cCCCCccCHHHHHHHHHHHHHCcCH
Confidence            4    34789999999999887743

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.16  E-value=0.0014  Score=55.94  Aligned_cols=172  Identities=15%  Similarity=0.160  Sum_probs=77.2

Q ss_pred             CCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHH
Q 045814          104 PDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGC  183 (427)
Q Consensus       104 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~  183 (427)
                      ||..--..+.+.|.+.|.++.|..++...+      -|.-++..+.+.++++.|.+++.+..      +..+|..+...+
T Consensus        12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~------d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~~~l   79 (336)
T d1b89a_          12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS------NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVCFAC   79 (336)
T ss_dssp             C----------------CTTTHHHHHHHTT------CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHHHHH
T ss_pred             CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC------CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHHHHH
Confidence            444455555666667777777777776543      35556666677777777766665441      455666666666


Q ss_pred             HHcCChhHHHHHHH----HHHhcchhHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHH
Q 045814          184 IKIDRTDLVWKLYH----DLIESGYLIQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHT  259 (427)
Q Consensus       184 ~~~~~~~~a~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~  259 (427)
                      .+......+.-+-.    .......++..|-..|.+++...+++..... -..+...++.++..|++.+ .++..+.+..
T Consensus        80 ~~~~e~~la~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~kl~e~l~~  157 (336)
T d1b89a_          80 VDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQKMREHLEL  157 (336)
T ss_dssp             HHTTCHHHHHHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHHHHHHHHH
T ss_pred             HhCcHHHHHHHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHHHHHHHHh
Confidence            66554433211100    0000012444455555555555555554432 1235555666666666543 2222222222


Q ss_pred             HhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          260 MVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       260 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      .  .    +..-...++..|-+.+-+.++.-++.++
T Consensus       158 ~--s----~~y~~~k~~~~c~~~~l~~elv~Ly~~~  187 (336)
T d1b89a_         158 F--W----SRVNIPKVLRAAEQAHLWAELVFLYDKY  187 (336)
T ss_dssp             H--S----TTSCHHHHHHHHHTTTCHHHHHHHHHHT
T ss_pred             c--c----ccCCHHHHHHHHHHcCChHHHHHHHHhc
Confidence            1  1    1122334455555555555555555543

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.13  E-value=1.2e-05  Score=57.41  Aligned_cols=86  Identities=10%  Similarity=-0.031  Sum_probs=40.1

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTD  391 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~  391 (427)
                      ..+.+.|++++|...+++..+.... +..+|..+..++.+.|++++|...++...+.. +.+...|..+...|...|+++
T Consensus        24 ~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~~  101 (112)
T d1hxia_          24 LSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNAN  101 (112)
T ss_dssp             HHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCHH
Confidence            3344445555555555554443211 34444444445555555555555555544432 113444444555555555555


Q ss_pred             HHHHHHHH
Q 045814          392 EAYHLFEE  399 (427)
Q Consensus       392 ~A~~~~~~  399 (427)
                      +|.+.+++
T Consensus       102 ~A~~~l~~  109 (112)
T d1hxia_         102 AALASLRA  109 (112)
T ss_dssp             HHHHHHHH
T ss_pred             HHHHHHHH
Confidence            55555444

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.4e-05  Score=58.04  Aligned_cols=92  Identities=18%  Similarity=0.107  Sum_probs=41.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcC---CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHH
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRID---NLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLC  385 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g---~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~  385 (427)
                      ++..+...+++++|++.|++....+ +.+..++..+..++.+.+   ++++|..+++++...+..|+ ..+|..+..+|.
T Consensus         5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~   83 (122)
T d1nzna_           5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY   83 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred             HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence            4444444555555555555555443 123444444444444322   23345555555444322222 123444455555


Q ss_pred             hcCCHHHHHHHHHHHHH
Q 045814          386 LHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       386 ~~g~~~~A~~~~~~m~~  402 (427)
                      +.|++++|.+.|+++.+
T Consensus        84 ~~g~~~~A~~~~~~aL~  100 (122)
T d1nzna_          84 RLKEYEKALKYVRGLLQ  100 (122)
T ss_dssp             HTTCHHHHHHHHHHHHH
T ss_pred             HHhhhHHHHHHHHHHHH
Confidence            55555555555555554

>d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor)
species: Trypanosoma brucei [TaxId: 5691]

Probab=98.12  E-value=1.4e-05  Score=57.11  Aligned_cols=93  Identities=11%  Similarity=-0.121  Sum_probs=81.0

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR  351 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  351 (427)
                      +-.+...+.+.|++++|...|++..+.... +..+|..+..++.+.|++++|+..+++..+... -+...+..+..+|..
T Consensus        19 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p-~~~~a~~~la~~y~~   96 (112)
T d1hxia_          19 PMEEGLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN   96 (112)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhccccccccccc-ccccchHHHHHHHHH
Confidence            345667788999999999999999887544 688999999999999999999999999998753 357889999999999


Q ss_pred             cCCHHHHHHHHHHHH
Q 045814          352 IDNLEEAKRLHKEML  366 (427)
Q Consensus       352 ~g~~~~a~~~~~~m~  366 (427)
                      .|++++|.+.+++.+
T Consensus        97 ~g~~~~A~~~l~~~l  111 (112)
T d1hxia_          97 EHNANAALASLRAWL  111 (112)
T ss_dssp             HHHHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHHHh
Confidence            999999999998764

>d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.07  E-value=1.8e-05  Score=57.43  Aligned_cols=94  Identities=18%  Similarity=0.206  Sum_probs=57.5

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 045814          274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGW---LGDARKMWFEMIHKGLLPN-EYTYNSMIHGY  349 (427)
Q Consensus       274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~---~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~  349 (427)
                      .+++.+...+++++|++.|++..+.+.. +..++..+..++.+.++   .++|+.+++++...+..|+ ..++..+..+|
T Consensus         4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~-~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y   82 (122)
T d1nzna_           4 AVLNELVSVEDLLKFEKKFQSEKAAGSV-SKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN   82 (122)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHSCC-CHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred             HHHHHhcCHHHHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence            4556666666777777777776665433 55566666666655443   3456777777665543333 23555666667


Q ss_pred             hhcCCHHHHHHHHHHHHHC
Q 045814          350 CRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       350 ~~~g~~~~a~~~~~~m~~~  368 (427)
                      .+.|++++|.+.|+++.+.
T Consensus        83 ~~~g~~~~A~~~~~~aL~~  101 (122)
T d1nzna_          83 YRLKEYEKALKYVRGLLQT  101 (122)
T ss_dssp             HHTTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHHHHHHHHh
Confidence            7777777777777777664

>d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: ARM repeat
family: Clathrin heavy chain proximal leg segment
domain: Clathrin heavy chain proximal leg segment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=98.02  E-value=0.003  Score=53.86  Aligned_cols=113  Identities=5%  Similarity=-0.026  Sum_probs=61.2

Q ss_pred             CChHHHHHHHHhcCChHHHHHHHHHHhhcCCCCCCHhhHHHHHHHHHHcCChHHHHHHHHhcCCCCCHHhHHHHHHHHHh
Q 045814           71 NDPLFFREFLKQQNNVLLSIRFFQWLHSHYGFSPDLVSCNVLFDSLVEARAFKVAMDFLDSTGFSPNPNSLELYIQCLCE  150 (427)
Q Consensus        71 ~~~~~~~~~l~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~li~~~~~  150 (427)
                      .+...+...+...+.++.|..++..+.          .|..++..+.+.++++.|.+.+.+.+   +..+|..+...+.+
T Consensus        15 ~d~~~i~~~c~~~~lye~A~~lY~~~~----------d~~rl~~~~v~l~~~~~avd~~~k~~---~~~~~k~~~~~l~~   81 (336)
T d1b89a_          15 AHIQQVGDRCYDEKMYDAAKLLYNNVS----------NFGRLASTLVHLGEYQAAVDGARKAN---STRTWKEVCFACVD   81 (336)
T ss_dssp             --------------CTTTHHHHHHHTT----------CHHHHHHHHHTTTCHHHHHHHHHHHT---CHHHHHHHHHHHHH
T ss_pred             CCHHHHHHHHHHCCCHHHHHHHHHhCC----------CHHHHHHHHHhhccHHHHHHHHHHcC---CHHHHHHHHHHHHh
Confidence            344444555666677777777776552          35666777777777777777776653   45566666666666


Q ss_pred             cCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814          151 SGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE  201 (427)
Q Consensus       151 ~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  201 (427)
                      ......|     .+...+...+......++..|...|.+++...+++....
T Consensus        82 ~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~  127 (336)
T d1b89a_          82 GKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALG  127 (336)
T ss_dssp             TTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT
T ss_pred             CcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHc
Confidence            6555433     122222333455556667777777777777777766543

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.93  E-value=0.00023  Score=54.85  Aligned_cols=77  Identities=10%  Similarity=-0.025  Sum_probs=53.8

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGL  384 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~  384 (427)
                      +|+.+..+|.+.|++++|+..+++.++... .+..++..+..+|...|++++|...|+...+.... |......+-...
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p-~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~  140 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDS-NNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQ  140 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhccc-cchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHH
Confidence            566677778888888888888888887642 26677777888888888888888888888775321 444444443433

>d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP52 (FKBP4), C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=0.00022  Score=54.95  Aligned_cols=76  Identities=9%  Similarity=-0.132  Sum_probs=58.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHG  348 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~  348 (427)
                      +|+.+..+|.+.|++++|+..++...+.... ++.+|..+..+|...|++++|...|++..+.... |......+-..
T Consensus        64 ~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~  139 (170)
T d1p5qa1          64 SHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVC  139 (170)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHH
Confidence            5667788888999999999999998887543 7778888999999999999999999999886421 44444444333

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.81  E-value=0.00024  Score=51.81  Aligned_cols=92  Identities=11%  Similarity=0.109  Sum_probs=41.7

Q ss_pred             HHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCC-CC-----hhhHHHHHHH
Q 045814          310 VIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYG-ET-----TVTYNTLIAG  383 (427)
Q Consensus       310 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-----~~~~~~li~~  383 (427)
                      +...+.+.|++++|+..|++.++.+. .+..++..+..+|.+.|++++|.+.++++++.... +.     ..+|..+...
T Consensus        10 ~G~~~~~~~~y~~Ai~~y~~al~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~   88 (128)
T d1elra_          10 LGNDAYKKKDFDTALKHYDKAKELDP-TNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNS   88 (128)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHcCCHHHHHHHHHHHHHhCc-ccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHH
Confidence            33444445555555555555544421 13444444555555555555555555554432100 00     1234444444


Q ss_pred             HHhcCCHHHHHHHHHHHHH
Q 045814          384 LCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       384 ~~~~g~~~~A~~~~~~m~~  402 (427)
                      +...+++++|++.|++...
T Consensus        89 ~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          89 YFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHTTCHHHHHHHHHHHHH
T ss_pred             HHHhCCHHHHHHHHHHHHh
Confidence            4555555555555554443

>d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Hop
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00018  Score=52.50  Aligned_cols=93  Identities=16%  Similarity=0.167  Sum_probs=48.8

Q ss_pred             HHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCC-CC-----HHHHHHHHH
Q 045814          274 EVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLL-PN-----EYTYNSMIH  347 (427)
Q Consensus       274 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~-p~-----~~~~~~li~  347 (427)
                      .+...+.+.|++++|+..|.+..+.+.. +...|..+..+|.+.|++++|...++++++.... +.     ..+|..+..
T Consensus         9 ~~G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~   87 (128)
T d1elra_           9 ELGNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGN   87 (128)
T ss_dssp             HHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHH
Confidence            3444555556666666666655554332 4555555556666666666666666555543100 00     123444555


Q ss_pred             HHhhcCCHHHHHHHHHHHHH
Q 045814          348 GYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       348 ~~~~~g~~~~a~~~~~~m~~  367 (427)
                      .+...+++++|.+.|+....
T Consensus        88 ~~~~~~~~~~A~~~~~kal~  107 (128)
T d1elra_          88 SYFKEEKYKDAIHFYNKSLA  107 (128)
T ss_dssp             HHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHhCCHHHHHHHHHHHHh
Confidence            55555666666666655544

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.78  E-value=0.00053  Score=51.63  Aligned_cols=112  Identities=12%  Similarity=-0.074  Sum_probs=67.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .+..-...+.+.|++.+|...|.+..+.-....             .............       ....+|..+..+|.
T Consensus        19 ~~~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~-------------~~~~~~~~~~~~~-------~~~~~~~Nla~~~~   78 (153)
T d2fbna1          19 DIKEEGNEFFKKNEINEAIVKYKEALDFFIHTE-------------EWDDQILLDKKKN-------IEISCNLNLATCYN   78 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCT-------------TCCCHHHHHHHHH-------HHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcchh-------------hhhhHHHHHhhhh-------HHHHHHhhHHHHHH
Confidence            444555667777888888877777665311000             0000000000000       01235666777777


Q ss_pred             hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          351 RIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       351 ~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      +.|++++|.+.++...+.+ +.+...|..+..+|...|++++|...|++..+.
T Consensus        79 ~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          79 KNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             Hhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            8888888888888777653 236677777788888888888888888777764

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.77  E-value=0.00031  Score=54.52  Aligned_cols=123  Identities=8%  Similarity=-0.021  Sum_probs=82.5

Q ss_pred             HHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCC
Q 045814          275 VINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDN  354 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~  354 (427)
                      ........|++++|...|......-  ++...        ......+.+...-..+...    ....+..+..++...|+
T Consensus        17 ~g~~~~~~g~~e~A~~~~~~AL~l~--rG~~l--------~~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~~~g~   82 (179)
T d2ff4a2          17 AGVHAAAAGRFEQASRHLSAALREW--RGPVL--------DDLRDFQFVEPFATALVED----KVLAHTAKAEAEIACGR   82 (179)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHHHTTC--CSSTT--------GGGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHHHTTC
T ss_pred             HHHHHHHCCCHHHHHHHHHHHHhhC--ccccc--------ccCcchHHHHHHHHHHHHH----HHHHHHHHHHHHHHCCC
Confidence            3356778899999999998887641  11110        0001111111111111111    23466778888999999


Q ss_pred             HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CCCCCCHhHH
Q 045814          355 LEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQ-----KGIFRDVITY  412 (427)
Q Consensus       355 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~-----~g~~p~~~~~  412 (427)
                      +++|...++.+.+.. +-+...|..++.+|...|+..+|++.|+++.+     .|+.|...+-
T Consensus        83 ~~~Al~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~  144 (179)
T d2ff4a2          83 ASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR  144 (179)
T ss_dssp             HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred             chHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence            999999999998864 33788899999999999999999999988744     4899987653

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=2.8e-05  Score=71.64  Aligned_cols=218  Identities=6%  Similarity=-0.077  Sum_probs=108.8

Q ss_pred             HHHHHHHh-cCCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHh
Q 045814          124 VAMDFLDS-TGFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIE  201 (427)
Q Consensus       124 ~a~~~~~~-~~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~  201 (427)
                      +|.+.|++ ..+.|+ ..++..+..++...+++++|   |+++....+. ....++..-...  ...+..+.+.++...+
T Consensus         4 eA~q~~~qA~~l~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~-~a~~~~~e~~Lw--~~~y~~~ie~~r~~~k   77 (497)
T d1ya0a1           4 QSAQYLRQAEVLKADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLE-YALDKKVEQDLW--NHAFKNQITTLQGQAK   77 (497)
T ss_dssp             HHHHHHHHHHHHHGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHH-HHHHHTHHHHHH--HHHTHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHcCCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChh-hHHHHhHHHHHH--HHHHHHHHHHHHHhcc
Confidence            45566665 344554 34666677778888887766   6666543211 111111111111  1113344555555443


Q ss_pred             cch------h-----HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHh
Q 045814          202 SGY------L-----IQAFCNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNF  270 (427)
Q Consensus       202 ~~~------l-----~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~  270 (427)
                      ...      +     .......+.++.++..+....+.. .++...+..+...+.+.|+.++|...+.......  | ..
T Consensus        78 ~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--~-~~  153 (497)
T d1ya0a1          78 NRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI--C-QH  153 (497)
T ss_dssp             CSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH--H-HH
T ss_pred             cccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC--H-HH
Confidence            310      1     111112233344443333332221 1245566677777778888888887776654432  1 24


Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      ++..+.+.+...|++++|...|.+..+.... +..+|+.+...+...|+..+|...|.+..... .|-..++..|...+.
T Consensus       154 ~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~-~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~  231 (497)
T d1ya0a1         154 CLVHLGDIARYRNQTSQAESYYRHAAQLVPS-NGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALS  231 (497)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-BSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHcccHHHHHHHHHHHHHHCCC-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHH
Confidence            6777788888888899999888888877443 55688888888888888888888888888764 456777777777665


Q ss_pred             hcC
Q 045814          351 RID  353 (427)
Q Consensus       351 ~~g  353 (427)
                      +..
T Consensus       232 ~~~  234 (497)
T d1ya0a1         232 KAL  234 (497)
T ss_dssp             HHT
T ss_pred             Hhh
Confidence            443

>d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Putative 70 kda peptidylprolyl isomerase PFL2275c
species: Plasmodium falciparum [TaxId: 5833]

Probab=97.70  E-value=0.0005  Score=51.76  Aligned_cols=62  Identities=13%  Similarity=-0.109  Sum_probs=30.8

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      +|+.+..+|.+.|++++|+..+++..+.+ +.+..+|..+..++...|++++|...|+...+.
T Consensus        69 ~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l  130 (153)
T d2fbna1          69 CNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL  130 (153)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHhhHHHHHHHhcccchhhhhhhcccccc-chhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence            34444455555555555555555554442 123445555555555555555555555555443

>d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: BTAD-like
domain: Probable regulatory protein EmbR, middle domain
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=97.68  E-value=0.00066  Score=52.54  Aligned_cols=59  Identities=10%  Similarity=0.061  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHH
Q 045814          236 AFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       236 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      .+..+...+.+.|++++|...++.+.+... -+...|..++.+|.+.|+..+|++.|+++
T Consensus        69 a~~~la~~~~~~g~~~~Al~~~~~al~~~P-~~e~~~~~l~~al~~~Gr~~eAl~~y~~~  127 (179)
T d2ff4a2          69 AHTAKAEAEIACGRASAVIAELEALTFEHP-YREPLWTQLITAYYLSDRQSDALGAYRRV  127 (179)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHTTTCHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHCCCchHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence            344444555555555555555555544432 24445555555555555555555555544

>d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: SMG-7
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.67  E-value=0.00017  Score=66.27  Aligned_cols=222  Identities=7%  Similarity=-0.076  Sum_probs=104.1

Q ss_pred             HHHHHHHHHHhcCCCcC-HhhHHHHHHHHHHcCChhHHHHHHHHHHhcch-h-----HHHHHhcCChhHHHHHHHHHHHC
Q 045814          156 EAFCAFSKLKEMGVFGS-IKTWNSALLGCIKIDRTDLVWKLYHDLIESGY-L-----IQAFCNDGKVSEGYELLRQVLED  228 (427)
Q Consensus       156 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-l-----~~~~~~~g~~~~a~~~~~~~~~~  228 (427)
                      +|.+.|++..+.  .|+ +..+..+..++...+++++|   |++++..+. .     +....-...+..+.+.++...+.
T Consensus         4 eA~q~~~qA~~l--~p~~a~a~~~la~~~~~~~~l~ea---ye~~i~~dp~~a~~~~~e~~Lw~~~y~~~ie~~r~~~k~   78 (497)
T d1ya0a1           4 QSAQYLRQAEVL--KADMTDSKLGPAEVWTSRQALQDL---YQKMLVTDLEYALDKKVEQDLWNHAFKNQITTLQGQAKN   78 (497)
T ss_dssp             HHHHHHHHHHHH--HGGGTCSSSCSSSSHHHHHHHHHH---HHHHHHHCHHHHHHHTHHHHHHHHHTHHHHHHHHHHHSC
T ss_pred             HHHHHHHHHHHc--CCCCHHHHhhHHHHHHHHchHHHH---HHHHHHcChhhHHHHhHHHHHHHHHHHHHHHHHHHhccc
Confidence            677888877763  333 33455555566666666554   555543321 0     00000011133455555555544


Q ss_pred             CCCCCHHHHHHHHHHH--HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhh
Q 045814          229 GLVPENTAFNKLISRF--CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVM  306 (427)
Q Consensus       229 ~~~~~~~~~~~li~~~--~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~  306 (427)
                      ...++..-....+..+  ...+.++.++..+....... .++...+..+...+.+.|+.++|...+.......   ...+
T Consensus        79 ~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~  154 (497)
T d1ya0a1          79 RANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHC  154 (497)
T ss_dssp             SSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH---HHHH
T ss_pred             ccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHH
Confidence            3333322222222111  12233444444443332221 2234556666677777777777777766655431   1245


Q ss_pred             HHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 045814          307 YTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCL  386 (427)
Q Consensus       307 ~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~  386 (427)
                      +..+...+...|++++|...|++..+... -+..+|+.+...|...|+..+|...|.+..... +|-...+..|...+.+
T Consensus       155 ~~~LG~l~~~~~~~~~A~~~y~~A~~l~P-~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~  232 (497)
T d1ya0a1         155 LVHLGDIARYRNQTSQAESYYRHAAQLVP-SNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSK  232 (497)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcccHHHHHHHHHHHHHHCC-CchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHH
Confidence            66677777777888888888887777632 245677777777777888888888777777653 3466677777766654


Q ss_pred             cC
Q 045814          387 HG  388 (427)
Q Consensus       387 ~g  388 (427)
                      ..
T Consensus       233 ~~  234 (497)
T d1ya0a1         233 AL  234 (497)
T ss_dssp             HT
T ss_pred             hh
Confidence            43

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.67  E-value=0.00038  Score=53.44  Aligned_cols=61  Identities=10%  Similarity=-0.162  Sum_probs=28.9

Q ss_pred             HHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          272 YEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       272 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      |..+..+|.+.|++++|+..+++..+.... +..+|..+..++...|++++|...|++..+.
T Consensus        80 ~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          80 VLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            334444444555555555555554444322 3344444445555555555555555554443

>d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Cyclophilin 40
species: Cow (Bos taurus) [TaxId: 9913]

Probab=97.62  E-value=0.00048  Score=52.89  Aligned_cols=62  Identities=13%  Similarity=0.029  Sum_probs=36.0

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK  368 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  368 (427)
                      .|..+..++.+.|++++|+..++++++.. +.+..+|..+..+|...|++++|...|+...+.
T Consensus        79 ~~~nla~~~~~~~~~~~Ai~~~~~al~~~-p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l  140 (169)
T d1ihga1          79 CVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEI  140 (169)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhhcccchhhhhhhhhhhhh-hhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence            44445555666666666666666665543 224455566666666666666666666666554

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.58  E-value=0.0019  Score=49.31  Aligned_cols=93  Identities=10%  Similarity=0.018  Sum_probs=62.1

Q ss_pred             hHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 045814          306 MYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLC  385 (427)
Q Consensus       306 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  385 (427)
                      .|+.+..+|.+.|++++|+..+++..... +.+..+|..+..+|...|++++|...|+.+.+... .+......+-....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcc-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            45667777888888888888888888764 34677788888888888888888888888887532 24444444444444


Q ss_pred             hcCCHH-HHHHHHHHH
Q 045814          386 LHGRTD-EAYHLFEEM  400 (427)
Q Consensus       386 ~~g~~~-~A~~~~~~m  400 (427)
                      ..+... ...+++..|
T Consensus       144 ~~~~~~e~~kk~~~~~  159 (168)
T d1kt1a1         144 KAKEHNERDRRTYANM  159 (168)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHHHHHH
Confidence            443332 233444444

>d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: FKBP51, C-terminal domain
species: Monkey (Saimiri boliviensis) [TaxId: 27679]

Probab=97.53  E-value=0.0021  Score=49.07  Aligned_cols=81  Identities=7%  Similarity=-0.056  Sum_probs=59.6

Q ss_pred             hHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHh
Q 045814          271 TYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYC  350 (427)
Q Consensus       271 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~  350 (427)
                      .|+.+..+|.+.|++++|+..++...+.... +..+|..+..++...|++++|...|+++..... .+......+-....
T Consensus        66 ~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P-~n~~~~~~l~~~~~  143 (168)
T d1kt1a1          66 AFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP-QNKAARLQIFMCQK  143 (168)
T ss_dssp             HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCT-TCHHHHHHHHHHHH
T ss_pred             HHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence            5666777888999999999999998876543 677888888999999999999999999887632 23444444433333


Q ss_pred             hcC
Q 045814          351 RID  353 (427)
Q Consensus       351 ~~g  353 (427)
                      +.+
T Consensus       144 ~~~  146 (168)
T d1kt1a1         144 KAK  146 (168)
T ss_dssp             HHH
T ss_pred             HHH
Confidence            333

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.42  E-value=0.00014  Score=60.33  Aligned_cols=121  Identities=11%  Similarity=0.023  Sum_probs=61.1

Q ss_pred             HhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHH
Q 045814          280 CKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEA  358 (427)
Q Consensus       280 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a  358 (427)
                      .+.|++++|+..+++..+.... |...+..+...++..|++++|...++...+.  .|+ ...+..+...+...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l--~P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHhccccHHH
Confidence            4556777777777777666443 5666777777777777777777777776665  333 22232222222222211111


Q ss_pred             HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 045814          359 KRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQK  403 (427)
Q Consensus       359 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~  403 (427)
                      ..-.......+-+++...+......+...|+.++|.+.++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            110000000011112233333345566667777777777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.42  E-value=0.00046  Score=51.43  Aligned_cols=113  Identities=12%  Similarity=0.079  Sum_probs=58.0

Q ss_pred             CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHcc----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhc
Q 045814          283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKM----------GWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRI  352 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~  352 (427)
                      +.+++|...|+...+..+. +..++..+..++...          +.+++|+..|++..+... -+..+|..+..+|...
T Consensus        11 ~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P-~~~~a~~~lG~~y~~~   88 (145)
T d1zu2a1          11 LLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDP-KKDEAVWCIGNAYTSF   88 (145)
T ss_dssp             HHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH
T ss_pred             ccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcc-hhhHHHhhHHHHHHHc
Confidence            3445555555555444322 333444444443322          234556666666665432 2445566565555544


Q ss_pred             C-----------CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC
Q 045814          353 D-----------NLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKGI  405 (427)
Q Consensus       353 g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~  405 (427)
                      |           .+++|.+.|+...+.  .|+...|..-+..+      .+|.+++.+..+.|+
T Consensus        89 g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~~~~e~~k~~~  144 (145)
T d1zu2a1          89 AFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQLHAEAYKQGL  144 (145)
T ss_dssp             HHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred             ccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHHHHHHHHHHhc
Confidence            3           256677777777764  45655555444333      455666666665543

>d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]}

class: Multi-domain proteins (alpha and beta)
fold: ImpE-like
superfamily: ImpE-like
family: ImpE-like
domain: Hypothetical protein VPA1032
species: Vibrio parahaemolyticus [TaxId: 670]

Probab=97.39  E-value=0.00014  Score=60.48  Aligned_cols=121  Identities=12%  Similarity=0.092  Sum_probs=66.2

Q ss_pred             HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCC-HhhHHHHHHHHHhcCChHHH
Q 045814          210 CNDGKVSEGYELLRQVLEDGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPD-NFTYEEVINGLCKSRKRLEA  288 (427)
Q Consensus       210 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a  288 (427)
                      .+.|++++|+..+++.++..+. +...+..+...++..|++++|.+.++...+..  |+ ...+..+...+...+..+++
T Consensus         7 L~~G~l~eAl~~l~~al~~~P~-d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~--P~~~~~~~~l~~ll~a~~~~~~a   83 (264)
T d1zbpa1           7 LSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKLF--PEYLPGASQLRHLVKAAQARKDF   83 (264)
T ss_dssp             TTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--GGGHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHhccccHHH
Confidence            4567777777777777776554 67777777777888888888877777777653  32 23333333333222222221


Q ss_pred             HHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHc
Q 045814          289 YRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHK  333 (427)
Q Consensus       289 ~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~  333 (427)
                      ..-.......+-.++...+......+...|+.++|...++++.+.
T Consensus        84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~  128 (264)
T d1zbpa1          84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL  128 (264)
T ss_dssp             TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred             HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence            111111001111112233334445566667777777777776654

>d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondrial import receptor subunit tom20-3
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=97.22  E-value=0.0015  Score=48.53  Aligned_cols=83  Identities=6%  Similarity=-0.082  Sum_probs=59.2

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814          148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       148 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      |-+.+.+++|.+.|+...+..+. ++.++..+..++...++...+.+-                .+.+++|+..|++.++
T Consensus         7 ~~r~~~fe~A~~~~e~al~~~P~-~~~~~~~~g~~l~~~~~~~~~~e~----------------~~~~~~Ai~~~~kAl~   69 (145)
T d1zu2a1           7 FDRILLFEQIRQDAENTYKSNPL-DADNLTRWGGVLLELSQFHSISDA----------------KQMIQEAITKFEEALL   69 (145)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHSCHHHH----------------HHHHHHHHHHHHHHHH
T ss_pred             HHHHccHHHHHHHHHHHHhhCCc-chHHHHHHHHHHHHhhhhhhhhHH----------------HHHHHHHHHHHHHHHH
Confidence            34566789999999999887655 778888888888776655544332                2335678888888887


Q ss_pred             CCCCCCHHHHHHHHHHHHccC
Q 045814          228 DGLVPENTAFNKLISRFCEKK  248 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~  248 (427)
                      ..+. +..+|..+..+|...|
T Consensus        70 l~P~-~~~a~~~lG~~y~~~g   89 (145)
T d1zu2a1          70 IDPK-KDEAVWCIGNAYTSFA   89 (145)
T ss_dssp             HCTT-CHHHHHHHHHHHHHHH
T ss_pred             hcch-hhHHHhhHHHHHHHcc
Confidence            6544 6778888887776654

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=97.13  E-value=0.004  Score=46.72  Aligned_cols=91  Identities=13%  Similarity=0.145  Sum_probs=59.9

Q ss_pred             HHHHccCCHHHHHHHHHHHHHcCC-CC----------CHHHHHHHHHHHhhcCCHHHHHHHHHHHHHC-----CCCCC--
Q 045814          312 HGLCKMGWLGDARKMWFEMIHKGL-LP----------NEYTYNSMIHGYCRIDNLEEAKRLHKEMLDK-----GYGET--  373 (427)
Q Consensus       312 ~~~~~~g~~~~a~~~~~~m~~~~~-~p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~--  373 (427)
                      ..+.+.|++++|+..|++.++... .|          ...+|+.+..+|...|++++|...+++..+.     ...++  
T Consensus        17 ~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~   96 (156)
T d2hr2a1          17 QRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEG   96 (156)
T ss_dssp             HHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHH
T ss_pred             HHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhccccccccccccc
Confidence            344456777777777776664311 01          1346777778888888888888888776642     11111  


Q ss_pred             ---hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          374 ---TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       374 ---~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                         ...|..+..+|...|++++|++.|++..+
T Consensus        97 ~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          97 KLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             chhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence               23566778888999999999999888665

>d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: CT2138-like
domain: Hypothetical protein CT2138
species: Chlorobium tepidum [TaxId: 1097]

Probab=96.91  E-value=0.0081  Score=44.90  Aligned_cols=92  Identities=14%  Similarity=0.013  Sum_probs=60.5

Q ss_pred             HHHHHhcCChHHHHHHHHHHHhCCCC-C----------ChhhHHHHHHHHHccCCHHHHHHHHHHHHHc-----CCCCC-
Q 045814          276 INGLCKSRKRLEAYRVFNDLKERGYV-P----------DTVMYTTVIHGLCKMGWLGDARKMWFEMIHK-----GLLPN-  338 (427)
Q Consensus       276 l~~~~~~~~~~~a~~~~~~m~~~~~~-p----------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-----~~~p~-  338 (427)
                      ...+.+.|++++|+..|++..+.... |          ....|+.+..+|.+.|++++|...+++..+.     ...++ 
T Consensus        16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~   95 (156)
T d2hr2a1          16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE   95 (156)
T ss_dssp             HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred             HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence            34455667777777777766542110 1          1346777788888888888888888777643     11221 


Q ss_pred             ----HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          339 ----EYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       339 ----~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                          ...++.+..+|...|++++|...|++..+
T Consensus        96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~  128 (156)
T d2hr2a1          96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE  128 (156)
T ss_dssp             HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence                12466678888999999999999888764

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=96.52  E-value=0.066  Score=38.37  Aligned_cols=111  Identities=9%  Similarity=-0.077  Sum_probs=59.1

Q ss_pred             ChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCCHHHHH
Q 045814          284 KRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDNLEEAK  359 (427)
Q Consensus       284 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~  359 (427)
                      ++++|.+.|++..+.|.   ...+..+.  .....+.++|+.++++..+.|   +......|-..|..    ..+.++|.
T Consensus         8 d~~~A~~~~~kaa~~g~---~~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~   79 (133)
T d1klxa_           8 DLKKAIQYYVKACELNE---MFGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA   79 (133)
T ss_dssp             HHHHHHHHHHHHHHTTC---TTHHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred             CHHHHHHHHHHHHHCCC---hhhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence            44555566655555442   12222222  122345666677766666655   23333334333332    34567777


Q ss_pred             HHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCC
Q 045814          360 RLHKEMLDKGYGETTVTYNTLIAGLCL----HGRTDEAYHLFEEMAQKGI  405 (427)
Q Consensus       360 ~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~  405 (427)
                      ++|++..+.|   ++.....|...|..    ..+.++|.++|++..+.|.
T Consensus        80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~  126 (133)
T d1klxa_          80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS  126 (133)
T ss_dssp             HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred             HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCC
Confidence            7777777665   34444555555544    3467777777777766653

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.49  E-value=0.012  Score=39.72  Aligned_cols=74  Identities=9%  Similarity=0.022  Sum_probs=53.3

Q ss_pred             CHhhHHHHHHHHHHcCChHHHHHHHHhc--------CCCCC-HHhHHHHHHHHHhcCChhHHHHHHHHHHhcCCCcCHhh
Q 045814          105 DLVSCNVLFDSLVEARAFKVAMDFLDST--------GFSPN-PNSLELYIQCLCESGLIEEAFCAFSKLKEMGVFGSIKT  175 (427)
Q Consensus       105 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~--------~~~~~-~~~~~~li~~~~~~~~~~~A~~~~~~m~~~g~~p~~~~  175 (427)
                      +...+-.+...+.+.|+++.|...|++.        ...++ ..+++.|..++.+.|++++|++.|+++.+..+. +..+
T Consensus         4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~-~~~a   82 (95)
T d1tjca_           4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPE-HQRA   82 (95)
T ss_dssp             CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHH
T ss_pred             cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcC-CHHH
Confidence            4455556777888899999998888752        11122 467888999999999999999999999886443 4445


Q ss_pred             HHHH
Q 045814          176 WNSA  179 (427)
Q Consensus       176 ~~~l  179 (427)
                      ++.+
T Consensus        83 ~~Nl   86 (95)
T d1tjca_          83 NGNL   86 (95)
T ss_dssp             HHHH
T ss_pred             HHHH
Confidence            5443

>d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.17  E-value=0.025  Score=37.90  Aligned_cols=21  Identities=0%  Similarity=-0.200  Sum_probs=9.0

Q ss_pred             HHHHHHhcCChHHHHHHHHHH
Q 045814          275 VINGLCKSRKRLEAYRVFNDL  295 (427)
Q Consensus       275 ll~~~~~~~~~~~a~~~~~~m  295 (427)
                      +...+.+.|++++|...|++.
T Consensus        11 lG~~~~~~g~y~~A~~~~~~A   31 (95)
T d1tjca_          11 LGKVAYTEADYYHTELWMEQA   31 (95)
T ss_dssp             HHHHHHHTTCHHHHHHHHHHH
T ss_pred             HHHHHHHCCCHHHHHHHHHHH
Confidence            333444444444444444443

>d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: HCP-like
family: HCP-like
domain: Cysteine rich protein B (HcpB)
species: Helicobacter pylori [TaxId: 210]

Probab=95.76  E-value=0.19  Score=35.70  Aligned_cols=81  Identities=7%  Similarity=-0.061  Sum_probs=37.7

Q ss_pred             CChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhh----cCC
Q 045814          283 RKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCK----MGWLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCR----IDN  354 (427)
Q Consensus       283 ~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~----~g~  354 (427)
                      .+.++|...+++..+.|   +...+..|...|..    ..+.++|.++|++..+.|   +......|...|..    ..+
T Consensus        37 ~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d  110 (133)
T d1klxa_          37 INKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKGVVKN  110 (133)
T ss_dssp             SCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCC
T ss_pred             cCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHHHHHhhhhccC---cchHHHHHHHHHHcCCccCCC
Confidence            34445555555554443   22333333333332    234556666666665554   22233333333332    235


Q ss_pred             HHHHHHHHHHHHHCC
Q 045814          355 LEEAKRLHKEMLDKG  369 (427)
Q Consensus       355 ~~~a~~~~~~m~~~~  369 (427)
                      .++|.++|+...+.|
T Consensus       111 ~~~A~~~~~~Aa~~G  125 (133)
T d1klxa_         111 EKQAVKTFEKACRLG  125 (133)
T ss_dssp             HHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHCC
Confidence            666666666665554

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=95.63  E-value=0.2  Score=34.82  Aligned_cols=141  Identities=9%  Similarity=0.055  Sum_probs=79.1

Q ss_pred             HHhcCChhHHHHHHHHHHhcCCCcCHhhHHHHHHHHHHcCChhHHHHHHHHHHhcchhHHHHHhcCChhHHHHHHHHHHH
Q 045814          148 LCESGLIEEAFCAFSKLKEMGVFGSIKTWNSALLGCIKIDRTDLVWKLYHDLIESGYLIQAFCNDGKVSEGYELLRQVLE  227 (427)
Q Consensus       148 ~~~~~~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~  227 (427)
                      +.-.|.+++..++..+....   .+..-||.++--....-+.+...+.++.+-+.-    -....++.......+-.+- 
T Consensus        12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~F----Dls~C~Nlk~vv~C~~~~n-   83 (161)
T d1wy6a1          12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DLDKCQNLKSVVECGVINN-   83 (161)
T ss_dssp             HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CGGGCSCTHHHHHHHHHTT-
T ss_pred             HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhc----CchhhhcHHHHHHHHHHhc-
Confidence            34457777888887777653   255667777777777777666666666554320    0122333333333222211 


Q ss_pred             CCCCCCHHHHHHHHHHHHccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCC
Q 045814          228 DGLVPENTAFNKLISRFCEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYV  301 (427)
Q Consensus       228 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~  301 (427)
                          .+...++..++....+|+-++-.+++..+.+. -+++....-.+..+|.+.|...++-+++.+.-+.|.+
T Consensus        84 ----~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K  152 (161)
T d1wy6a1          84 ----TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK  152 (161)
T ss_dssp             ----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred             ----chHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence                13344555566666666666666666665553 3455555666666666666666666666666666543

>d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Hypothetical protein ST1625
family: Hypothetical protein ST1625
domain: Hypothetical protein ST1625
species: Archaeon Sulfolobus tokodaii [TaxId: 111955]

Probab=94.92  E-value=0.35  Score=33.55  Aligned_cols=140  Identities=13%  Similarity=0.058  Sum_probs=84.3

Q ss_pred             HccCChhHHHHHHHHHhhCCCCCCHhhHHHHHHHHHhcCChHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHH
Q 045814          245 CEKKNFGRVSELLHTMVARNRAPDNFTYEEVINGLCKSRKRLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDAR  324 (427)
Q Consensus       245 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~  324 (427)
                      .-.|..++..+++.+.....   +..-||.++--....-+-+...++++.+-..   .|..          ..+++....
T Consensus        13 ildG~ve~Gveii~k~~~ss---~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~---FDls----------~C~Nlk~vv   76 (161)
T d1wy6a1          13 LLDGYIDEGVKIVLEITKSS---TKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FDLD----------KCQNLKSVV   76 (161)
T ss_dssp             HHTTCHHHHHHHHHHHHHHS---CHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SCGG----------GCSCTHHHH
T ss_pred             HHhhhHHhHHHHHHHHcccC---CccccceeeeecccccchHHHHHHHHHHhhh---cCch----------hhhcHHHHH
Confidence            34567777777777766542   3445555555555555666666666655322   1211          122222222


Q ss_pred             HHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 045814          325 KMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLIAGLCLHGRTDEAYHLFEEMAQKG  404 (427)
Q Consensus       325 ~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g  404 (427)
                      .-+-.+     ..+...++..++....+|.-+.-.++++++.+. -+|++...-.+..+|.+.|...++-+++.+.-++|
T Consensus        77 ~C~~~~-----n~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G  150 (161)
T d1wy6a1          77 ECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKG  150 (161)
T ss_dssp             HHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred             HHHHHh-----cchHHHHHHHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHh
Confidence            222111     112334555667777888888888888887764 45677778888888888888888888888888887


Q ss_pred             CC
Q 045814          405 IF  406 (427)
Q Consensus       405 ~~  406 (427)
                      ++
T Consensus       151 ~K  152 (161)
T d1wy6a1         151 EK  152 (161)
T ss_dssp             CH
T ss_pred             HH
Confidence            65

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=92.35  E-value=0.89  Score=29.74  Aligned_cols=62  Identities=19%  Similarity=0.255  Sum_probs=33.8

Q ss_pred             CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 045814          319 WLGDARKMWFEMIHKGLLPNEYTYNSMIHGYCRIDNLEEAKRLHKEMLDKGYGETTVTYNTLI  381 (427)
Q Consensus       319 ~~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~li  381 (427)
                      +.-++.+-++.+....+.|++....+.+++|-+.+++..|.++++-.+.. +.++...|..++
T Consensus        21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K-~~~~k~~y~yil   82 (105)
T d1v54e_          21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK-AGPHKEIYPYVI   82 (105)
T ss_dssp             CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TTTCTTHHHHHH
T ss_pred             cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-hcCcHHHHHHHH
Confidence            33455555555555556666666666666666666666666666655533 222334444443

>d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Cytochrome c oxidase subunit E
family: Cytochrome c oxidase subunit E
domain: Cytochrome c oxidase subunit E
species: Cow (Bos taurus) [TaxId: 9913]

Probab=91.98  E-value=0.99  Score=29.50  Aligned_cols=48  Identities=13%  Similarity=0.151  Sum_probs=26.6

Q ss_pred             hHHHHHHHHHHHhCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHH
Q 045814          285 RLEAYRVFNDLKERGYVPDTVMYTTVIHGLCKMGWLGDARKMWFEMIH  332 (427)
Q Consensus       285 ~~~a~~~~~~m~~~~~~p~~~~~~~li~~~~~~g~~~~a~~~~~~m~~  332 (427)
                      .-++.+-++.+......|++....+.+.+|-+.+++..|.++++-.+.
T Consensus        22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~   69 (105)
T d1v54e_          22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD   69 (105)
T ss_dssp             HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence            334455555555555555555555556666666666666655555443

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=90.97  E-value=1.6  Score=30.09  Aligned_cols=47  Identities=11%  Similarity=0.134  Sum_probs=21.3

Q ss_pred             HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHhhcCCHHHHHHHHHHHHH
Q 045814          320 LGDARKMWFEMIHKGLLPN-EYTYNSMIHGYCRIDNLEEAKRLHKEMLD  367 (427)
Q Consensus       320 ~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~a~~~~~~m~~  367 (427)
                      .++++.+++++.+.+ +.+ ...+-.+.-+|.+.|++++|.+.++.+.+
T Consensus        54 ~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          54 ERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            345555555554432 111 12333344445555555555555555554

>d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: TPR-like
family: Tetratricopeptide repeat (TPR)
domain: Mitochondria fission protein Fis1
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=84.43  E-value=4.6  Score=27.70  Aligned_cols=48  Identities=8%  Similarity=0.091  Sum_probs=26.6

Q ss_pred             CHHHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 045814          354 NLEEAKRLHKEMLDKGYGET-TVTYNTLIAGLCLHGRTDEAYHLFEEMAQ  402 (427)
Q Consensus       354 ~~~~a~~~~~~m~~~~~~p~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~  402 (427)
                      ++++|..+++++.+.+ +.+ ...+-.|.-+|.+.|++++|.+.++.+.+
T Consensus        53 d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~  101 (124)
T d2pqrb1          53 DERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE  101 (124)
T ss_dssp             HHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence            3456666666665432 112 23444555556666666666666666665