Citrus Sinensis ID: 045838


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150
KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKIAV
cccEEcccccccccccccccccccccccEEccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHcccccccccccccccccccccccccEEEcccccccEEEEEEEcccccccccccc
ccEEEcccccccccccccccccccccccEEEEEEEccccHccccccHccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccEEEccccccEEEcccccccEEEEEEEEccccccccccc
kdmiverfcmgsrgfhdsiivpgkvrvksclftrrrhppppppsprlqylGLCAWlyevpaygppgqalvapnatnpfktgyfqgdalapLESIAACLGLFgagayaglpgdlkadkvSKASYnaygargskfllpaiwlpvsldckiav
KDMIVERfcmgsrgfhdsiivpgKVRVKSCLftrrrhppppppspRLQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYgargskfllpaiwlpvsldckiav
KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTrrrhppppppsprLQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIaaclglfgagayaglpgDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKIAV
**********************************************LQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKI**
KDMIVERFCMGSRGFHDSII************TRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPP**ALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKIAV
KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKIAV
KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDC****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
iiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPPGQALVAPNATNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKIAV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
224131076 324 predicted protein [Populus trichocarpa] 0.906 0.419 0.541 1e-38
225437453 323 PREDICTED: uncharacterized protein LOC10 0.913 0.424 0.527 5e-37
255564270 317 conserved hypothetical protein [Ricinus 0.913 0.432 0.512 2e-35
148909375 359 unknown [Picea sitchensis] 1.0 0.417 0.417 3e-28
116786759 358 unknown [Picea sitchensis] 1.0 0.418 0.417 4e-28
116792563 366 unknown [Picea sitchensis] 1.0 0.409 0.422 6e-28
148909575 336 unknown [Picea sitchensis] 0.946 0.422 0.416 2e-26
449523201 321 PREDICTED: uncharacterized protein LOC10 0.94 0.439 0.426 1e-25
449438771 305 PREDICTED: uncharacterized protein LOC10 0.94 0.462 0.426 2e-25
116793469 330 unknown [Picea sitchensis] 0.953 0.433 0.431 4e-25
>gi|224131076|ref|XP_002320995.1| predicted protein [Populus trichocarpa] gi|222861768|gb|EEE99310.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  164 bits (415), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 91/168 (54%), Positives = 106/168 (63%), Gaps = 32/168 (19%)

Query: 1   KDMIVERFCMGSRGFHDSIIVP--GKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYE 58
           KD+ VE+FCM S GFHDS++V   G V V + +    + P            G CAW Y 
Sbjct: 168 KDVSVEKFCMDSCGFHDSVLVTPKGSVIVYAHVGDAVQCP------------GFCAWPYA 215

Query: 59  VPAYGPPGQALVAPN------------------ATNPFKTGYFQGDALAPLESIAACLGL 100
           +PAYGPPGQALVAPN                  ATNPFKTGYFQGD LAPLE+++AC G+
Sbjct: 216 LPAYGPPGQALVAPNGVGADGMVINIATILAGAATNPFKTGYFQGDILAPLEAVSACPGI 275

Query: 101 FGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKI 148
           FGAGAY G PG+L  DK SKASYN YGA G KFLLPA+W  V L CK+
Sbjct: 276 FGAGAYPGYPGNLMVDKFSKASYNVYGANGEKFLLPAVWDLVGLTCKV 323




Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225437453|ref|XP_002272941.1| PREDICTED: uncharacterized protein LOC100257315 [Vitis vinifera] gi|297743927|emb|CBI36897.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|255564270|ref|XP_002523132.1| conserved hypothetical protein [Ricinus communis] gi|223537694|gb|EEF39317.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
>gi|148909375|gb|ABR17786.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|116786759|gb|ABK24226.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|116792563|gb|ABK26415.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|148909575|gb|ABR17880.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|449523201|ref|XP_004168612.1| PREDICTED: uncharacterized protein LOC101227929, partial [Cucumis sativus] Back     alignment and taxonomy information
>gi|449438771|ref|XP_004137161.1| PREDICTED: uncharacterized protein LOC101213735 [Cucumis sativus] Back     alignment and taxonomy information
>gi|116793469|gb|ABK26758.1| unknown [Picea sitchensis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query150
TAIR|locus:2173428305 EXL2 "AT5G64260" [Arabidopsis 0.546 0.268 0.402 2e-21
TAIR|locus:2138753314 EXO "AT4G08950" [Arabidopsis t 0.553 0.264 0.409 3.9e-17
TAIR|locus:2203314309 PHI-1 "AT1G35140" [Arabidopsis 0.913 0.443 0.317 1e-11
TAIR|locus:2184792278 EXL4 "AT5G09440" [Arabidopsis 0.666 0.359 0.336 8.4e-11
TAIR|locus:2173428 EXL2 "AT5G64260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 157 (60.3 bits), Expect = 2.0e-21, Sum P(3) = 2.0e-21
 Identities = 33/82 (40%), Positives = 42/82 (51%)

Query:    69 LVAPNATNPFKTGYFQGDALAPLESIXXXXXXXXXXXXXXXXXDLKADKVSKASYNAYGA 128
             L+A   TNPF  GY+QG   APLE++                  +  DK + +SYNA G 
Sbjct:   224 LLANTVTNPFNNGYYQGPPTAPLEAVSACPGIFGSGSYPGYAGRVLVDKTTGSSYNARGL 283

Query:   129 RGSKFLLPAIWLPVSLDCKIAV 150
              G K+LLPA+W P S  CK  V
Sbjct:   284 AGRKYLLPAMWDPQSSTCKTLV 305


GO:0003674 "molecular_function" evidence=ND
GO:0008150 "biological_process" evidence=ND
GO:0009507 "chloroplast" evidence=ISM
GO:0005618 "cell wall" evidence=IDA
GO:0009505 "plant-type cell wall" evidence=IDA
GO:0005829 "cytosol" evidence=IDA
GO:0009506 "plasmodesma" evidence=IDA
GO:0005794 "Golgi apparatus" evidence=IDA
GO:0046685 "response to arsenic-containing substance" evidence=RCA
TAIR|locus:2138753 EXO "AT4G08950" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2203314 PHI-1 "AT1G35140" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2184792 EXL4 "AT5G09440" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Your Input:
fgenesh4_pg.C_LG_XIV000666
hypothetical protein (324 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query150
pfam04674273 pfam04674, Phi_1, Phosphate-induced protein 1 cons 3e-36
>gnl|CDD|218205 pfam04674, Phi_1, Phosphate-induced protein 1 conserved region Back     alignment and domain information
 Score =  125 bits (316), Expect = 3e-36
 Identities = 68/169 (40%), Positives = 82/169 (48%), Gaps = 28/169 (16%)

Query: 1   KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVP 60
            D+ VE FCM   GFH S   P  V  +               +   Q  G CAW +  P
Sbjct: 114 PDVTVEGFCMSRCGFHGST-FPSVVGYRF--------AYAWVGNSATQCPGQCAWPFHQP 164

Query: 61  AYGPPGQALVAPN-------------------ATNPFKTGYFQGDALAPLESIAACLGLF 101
            YGP    LVAPN                    TNPF  GY+QGDA APLE+ +AC G++
Sbjct: 165 VYGPQAPPLVAPNGDVGVDGMVINLAHLLAGTVTNPFGNGYYQGDATAPLEAASACPGVY 224

Query: 102 GAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLPVSLDCKIAV 150
           G+GAY G  G L  D  + ASYNA G  G K+LLPA+W PV+  C   V
Sbjct: 225 GSGAYPGYAGQLLVDAATGASYNANGVNGRKYLLPALWDPVTSACSTLV 273


Family of conserved plant proteins. Conserved region identified in a phosphate-induced protein of unknown function. Length = 273

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 150
PF04674273 Phi_1: Phosphate-induced protein 1 conserved regio 100.0
>PF04674 Phi_1: Phosphate-induced protein 1 conserved region; InterPro: IPR006766 This entry represents a family of conserved plant proteins Back     alignment and domain information
Probab=100.00  E-value=8.7e-79  Score=514.66  Aligned_cols=141  Identities=50%  Similarity=0.921  Sum_probs=136.0

Q ss_pred             CCCeeccccccCcCCCCCCCCCCcccccccccccCccCCCCCCCCCCCCCCCccCCCCcCCCCCCCCcccCCCC------
Q 045838            1 KDMIVERFCMGSRGFHDSIIVPGKVRVKSCLFTRRRHPPPPPPSPRLQYLGLCAWLYEVPAYGPPGQALVAPNA------   74 (150)
Q Consensus         1 ~DV~VegFC~~~CG~H~~~~~~~~~~~~~~~~~~~~~~YawVGns~~qCpg~CAwPf~~P~ygP~~~pLvaPNg------   74 (150)
                      +||.||+|||++||+|++++ ++   .++.     ++||+|||||++||||+||||||+|+||||+++|+||||      
T Consensus       114 ~DV~v~gFC~~~CG~H~~~~-~~---~~~~-----~~~YawVGns~~qCPg~CAwPf~~p~ygp~~~~l~~PNgDvGvDG  184 (273)
T PF04674_consen  114 ADVAVEGFCMSRCGFHGSTF-PS---SVGK-----RLPYAWVGNSETQCPGQCAWPFHQPIYGPQGPPLVPPNGDVGVDG  184 (273)
T ss_pred             ccceecccccccccCCcCCc-cc---cccc-----ceeEEEecCccCCCCCCCCCCCcccccCCCCCCccCCCCCcchhh
Confidence            69999999999999999988 43   3455     899999999999999999999999999999999999999      


Q ss_pred             -------------CCCCCCccccCCCCCCchhhhcccCcccCCCCCCCCcceeecCCCCceeecccCCCceeeeeccccC
Q 045838           75 -------------TNPFKTGYFQGDALAPLESIAACLGLFGAGAYAGLPGDLKADKVSKASYNAYGARGSKFLLPAIWLP  141 (150)
Q Consensus        75 -------------TNP~~ngyyqG~~~aplEa~~aC~GiyG~GaypGy~G~l~vD~~tGaSYNa~G~~GRkfLlpa~wdP  141 (150)
                                   ||||+|||||||++|||||+|+|+||||+||||||+|+|+||++||||||++|+|||||||||||||
T Consensus       185 Mvi~iA~~LA~~~TNP~~~g~yqg~~~aplEaa~aC~giyG~Gaypgy~G~l~vD~~tGaSyN~~G~~gRkfLlpa~wdP  264 (273)
T PF04674_consen  185 MVINIAHELAGAVTNPFGNGYYQGDATAPLEAADACAGIYGSGAYPGYPGQLLVDPATGASYNANGVNGRKFLLPALWDP  264 (273)
T ss_pred             HHHHHHHHHHHhhcCccccccccCCCCCccchhhhccccccCCCCCCCCcceeecCCCCceeeccccCCceEEeecccCC
Confidence                         9999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCccccCC
Q 045838          142 VSLDCKIAV  150 (150)
Q Consensus       142 ~t~~C~~~~  150 (150)
                      +|++|+|||
T Consensus       265 ~t~~C~t~v  273 (273)
T PF04674_consen  265 ETSSCSTLV  273 (273)
T ss_pred             CcCcccccC
Confidence            999999997



A conserved region in these proteins was identified in a phosphate-induced protein of unknown function [].


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00