Citrus Sinensis ID: 045851

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470---
Protein Sequence
MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKLKLDEGNGVPNGTVSNARAMRKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPGVTRKINMKDKHLKAMMENQKTHLRKVLK
Secondary Structure (PSIPRED)
ccccccccccccHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHccccccccHHcccccccccHHHHHHHHHHcHHHHHHcccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHc
Secondary Structure Prediction (SSPRO)
ccccccccccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccHcccccccccccccHHHHHHHHHHcccccccHcccccccccccccccHccEEccccccHHcccccccccccccccccccccccccccEcccHHHcccccccccccccccccccccEEEcccccccccccccccccccccEEccccccccHHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccEcccccccccHHHHHHHHHHHHHHHHHHHHHcc
Coil and Loop (DISEMBL)
megvtkwdpgcsktaREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLniqdsdefeyvapasdsIFSIFEELRQGvdaremevepltnyspiydasnhhivspevndfdnnhVLKHLNGfidcnnglkkdsrswecarhsedqgsrcsvggrdpsinsggqgkvaskstimhhgnggqhspntdasdecsvsgeqprqkacsvsklkldegngvpngtvsNARAMRKLVdggcnqgdlteqfvlpdlgnphitrgmkgctewpgvtrkiNMKDKHLKAMMENQKTHLRKVLK
Flexible Loop (DISEMBL)
megvtkwdpgcsktaREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHeledehrsskkkyenlVRKLreernswyvrkhykmeaIVDELKDELSKerksrkqidflnsKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECArhsedqgsrcsvggrdpsinsgGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSvsklkldegngvpngtvsNARAMRKLVDGGCNQGDLTEQFVLPDLGNPHITrgmkgctewpgvtRKINMKDKHLKAMmenqkthlrkvlk
Low Complexity Region (SEG)
MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKLKLDEGNGVPNGTVSNARAMRKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPGVTRKINMKDKHLKAMMENQKTHLRKVLK
Disordered region (IsUnstruct)
*********GCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHE***************V*KLREERNSWYVRKHYKMEAIVD********************************************************************MLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLK**************************************************************************************************KLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPGVTRKI***********************
Disordered Region (DISOPRED)
****TK*************CLYNH********************LVQA*************************************************************************************************************************************************KLVE******************************************************************************************************************************************************************************************************************************************************************************LR****
Disordered Region (DISEMBL)
********PGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKD********RKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLKK********************GGRDPS**********SKSTIMH******************************VSKLKLDEGNGVPNGTVSNARAMRKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPGVTRKINMKDKHLKAMMENQK********
Disordered Region (DISPRO)
*****KWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQG*******VEPLTNYSPIYDASNHHIVSPEVNDFDNNHV*K**************************************************S*****************DASDECSVS*EQPRQKACSVSKLKLDEGN***************************************I*RGMKGCTEWPGVTRKINMKDKHLKAMMENQKTHLR*VL*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
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TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxRNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKLKLDEGNGVPNGTVSNARAMRKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPGVTRKINMKDKHLKAMMENQKTHLRKVLK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	473	2.2.26 [Sep-21-2011]
Q66GQ2	623	Uncharacterized protein A	no	no	0.403	0.306	0.261	7e-09

>sp|Q66GQ2|Y5162_ARATH Uncharacterized protein At5g41620 OS=Arabidopsis thaliana GN=At5g41620 PE=1 SV=2

 Score = 62.4 bits (150), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 107/214 (50%), Gaps = 23/214 (10%)

Query: 13  KTAREAYCLYNHVKLLEDQ-VTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71
           KT+ E   + N +  LE+Q V+  S + AL+ E+  +R+RI EL    ++ + + +++V+
Sbjct: 194 KTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVK 253

Query: 72  KLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFM 131
           +L EE+     ++  +M + V  ++  L  ERK RK+ + L+ K   EL++ +SS    +
Sbjct: 254 QLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCV 313

Query: 132 QYYEEEKRARQLLE------ESKTMRIREEVE--EERNM--------------LQLAEIW 169
           +  E   ++ +++E              EE+   +++N+              L +AE W
Sbjct: 314 KELERGSKSNKMMELLCDEFAKGIKSYEEEIHGLKKKNLDKDWAGRGGGDQLVLHIAESW 373

Query: 170 REERVQMKLVDAKLALEHKYSQINKLVEELENFL 203
            +ER+QM+L           S ++KL  E+E FL
Sbjct: 374 LDERMQMRLEGGDTLNGKNRSVLDKLEVEIETFL 407

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
359483440	752	PREDICTED: uncharacterized protein LOC10	0.995	0.626	0.496	1e-120
255583593	714	conserved hypothetical protein [Ricinus	0.995	0.659	0.454	1e-110
225460985	717	PREDICTED: uncharacterized protein LOC10	0.995	0.656	0.449	1e-109
356499392	691	PREDICTED: uncharacterized protein LOC10	0.987	0.675	0.428	1e-101
356553569	690	PREDICTED: uncharacterized protein LOC10	0.987	0.676	0.420	3e-99
224114457	498	predicted protein [Populus trichocarpa]	0.983	0.933	0.437	1e-96
297737432	673	unnamed protein product [Vitis vinifera]	0.902	0.634	0.421	1e-96
224078620	496	predicted protein [Populus trichocarpa]	0.966	0.921	0.424	3e-93
449463264	710	PREDICTED: uncharacterized protein LOC10	0.989	0.659	0.425	2e-90
356524256	699	PREDICTED: uncharacterized protein LOC10	0.987	0.668	0.421	3e-90

>gi|359483440|ref|XP_002268763.2| PREDICTED: uncharacterized protein LOC100245273 [Vitis vinifera]

 Score =  438 bits (1127), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 255/514 (49%), Positives = 336/514 (65%), Gaps = 43/514 (8%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLED-QVTTFSFVSALQAELVQARLRIHELEDEH 59
           +E  TKWD G S+++ E    Y+ +KL ED Q++T S VS LQAEL+QAR RIHELE E 
Sbjct: 238 LERATKWDSGYSRSSDEFGHFYSQMKLHEDGQLSTVSVVSTLQAELLQARTRIHELEAER 297

Query: 60  RSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNE 119
            S KKK E+ ++K+ E+R SW  R+  K+  I+D+LKD+L+ ERK+R++++ LNSK VNE
Sbjct: 298 HSFKKKLEHFLKKVNEDRTSWQSREQQKIRGIIDDLKDKLNIERKNRQRMEILNSKLVNE 357

Query: 120 LAKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEE 159
           LA A+ S K+FMQ YE+E++ R+L+EE                     + ++IREEVEEE
Sbjct: 358 LADAKLSMKEFMQEYEKERKGRELMEEVCNELAKEIGEDKAEVESFKREYVKIREEVEEE 417

Query: 160 RNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAE 219
           R MLQ+AE+WREERVQMKLVDAKL LE+KY Q+NKLV +LE FL S +ATLDVM LR AE
Sbjct: 418 RKMLQMAEVWREERVQMKLVDAKLTLENKYCQMNKLVADLETFLSSRSATLDVMELRHAE 477

Query: 220 LIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNH 279
           LI +AV  + IQD  EF Y  P +D IFSIFEEL+ G +A   E+EP TNY+P   AS  
Sbjct: 478 LIRQAVNSVKIQDIKEFSYAPPKTDDIFSIFEELKNG-EANGREIEPCTNYNPPTHASKI 536

Query: 280 HIVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINS 339
              +PEVN F  + + K  NGF+D N  L++D+  WE     EDQGS  S+ G D S+N 
Sbjct: 537 QNGNPEVNRFSKSPLQKCPNGFVDHNRCLEEDASGWETVSRVEDQGSIYSLEGSDYSVNR 596

Query: 340 GGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQK---ACSVSKL--------- 387
             QG+ AS+S I    N GQ SP+T  S+ CSVS +Q +Q    A SVSKL         
Sbjct: 597 FSQGRNASRSGIEWDENAGQDSPHTATSEVCSVSAKQSKQTKQNASSVSKLWRSCSSNGE 656

Query: 388 --KL--DEGNG-VPNGTVSNARAM---RKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKG 439
             K+  DEGN  + NGT+++   M   R L +GG +  DL +Q+  P+ GNPH+TRG+KG
Sbjct: 657 IYKIISDEGNARLSNGTITSVGTMSPSRGLGEGGLSHQDLVDQWSSPETGNPHVTRGVKG 716

Query: 440 CTEWPGVTRKINMKDKHLKAMMENQKTHLRKVLK 473
           CTE P  T+  ++K K L+A ME+QK  LR+VLK
Sbjct: 717 CTEHPQGTQS-SLKAKLLEARMESQKIQLRQVLK 749

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255583593|ref|XP_002532552.1| conserved hypothetical protein [Ricinus communis] gi|223527707|gb|EEF29813.1| conserved hypothetical protein [Ricinus communis]

 Score =  405 bits (1040), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 231/508 (45%), Positives = 316/508 (62%), Gaps = 37/508 (7%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKWDP C +T  E   +Y+ +K L+ QV+  S VSAL+AEL QAR RI ELE E R
Sbjct: 206 MEGATKWDPVCLETIDEVRQIYSQMKRLDHQVSAVSMVSALEAELEQARARIQELEAERR 265

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           +SKKK E+ ++K+ EER +W  R+H K+ A +D++K +LS+ERK+R++++ +NSK VNEL
Sbjct: 266 TSKKKMEHFLKKVSEERVAWRSREHEKIRAFIDDIKGDLSRERKNRQRLEIVNSKLVNEL 325

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           A A+ SAK+FMQ YE+E++AR+L+EE                     ++M++REEV+EER
Sbjct: 326 ADAKVSAKRFMQDYEKERKARELIEEVCDELAKEIGQDKAEVEAFKRESMKLREEVDEER 385

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKLVDAK+ALE KYSQ+N+LV +LE FL S  AT D+  +R+AE 
Sbjct: 386 KMLQMAEVWREERVQMKLVDAKVALEAKYSQMNRLVADLETFLRSRTATPDLKEMREAES 445

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           +++A   ++ QD  EF Y  P  D IFS+FEE+  G +  E E+EP   YSP   AS  H
Sbjct: 446 LVQAAASVDFQDVKEFTYEPPNPDDIFSVFEEVNCG-EPNEREIEPCVAYSPASHASKIH 504

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
            VSPE+N  + N   +H + F D N  +++D   WE   H EDQGS  S  G  PS+N+ 
Sbjct: 505 TVSPEINVINKNGNHRHSDAFYDQNGDIEEDESGWETVSHLEDQGSSYSPEGSVPSVNNK 564

Query: 341 G-QGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKLKLDEGNGVP--- 396
             +    S S      N    +  T+ ++ CSV   Q  +K  S++KL    G+      
Sbjct: 565 NHRDSNVSGSGTEWEENACDETSITEITELCSVPIRQ-YKKVSSIAKLWRSGGDNYKIIS 623

Query: 397 ----NGTVSNARAMRKLV---DGGCNQG----DLTEQFVLPDLGNPHITRGMKGCTEWPG 445
               NG +SN R    ++   D G  +G    DLT Q+  PD GNPHITRGMKGC EWP 
Sbjct: 624 VDGMNGRLSNGRKSNGVIVSPDRGSGKGGLSPDLTGQWSSPDSGNPHITRGMKGCIEWPR 683

Query: 446 VTRKINMKDKHLKAMMENQKTHLRKVLK 473
             +K ++K K ++A ME+QK  LR VLK
Sbjct: 684 GAQKNSLKAKLMEARMESQKVQLRHVLK 711

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225460985|ref|XP_002280336.1| PREDICTED: uncharacterized protein LOC100255542 [Vitis vinifera]

 Score =  402 bits (1034), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 230/512 (44%), Positives = 316/512 (61%), Gaps = 41/512 (8%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKW+P CSKT+ E   LY  +K  + QV+  S VSAL+AEL QAR RI ELE E R
Sbjct: 205 MEGATKWNPVCSKTSDEVRQLYGQMKQFDQQVSAVSVVSALEAELAQARARIDELEAERR 264

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           SSKKK E+ ++K+ EER SW  R+H K+ AI+D++K +L++ERK+R++I+ +NSK VNEL
Sbjct: 265 SSKKKLEHFLKKVSEERASWRRREHEKIRAIIDDVKTDLNRERKNRQRIELINSKLVNEL 324

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           +  + SAK+FMQ YE+E++ R++LEE                     ++M++R+E+EEER
Sbjct: 325 SDVKLSAKRFMQDYEKERKDREVLEEVCDELAKEIGDDKAEAESLKRESMKLRDEMEEER 384

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKLV AK+ALE KY+Q+NK++ ++  FL S  A  DV  +++ E 
Sbjct: 385 KMLQMAEVWREERVQMKLVAAKVALEEKYAQMNKVMADIAAFLRSKGANPDVKEMKEVES 444

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           +  A   +NIQD  EF YV P  D IFSI EE+  G +  E E+E    YSP   AS  H
Sbjct: 445 LCEAAAAVNIQDVKEFTYVPPNPDDIFSILEEVNFG-EPNEREIEACAAYSPASHASKIH 503

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
            VSPE+N    + + +H N F + N  +++D   WE   H+EDQGS  S GG DPS++  
Sbjct: 504 TVSPEINMVKKDDIRRHSNAFSEENGDIEEDESGWETVSHAEDQGSSYSPGGSDPSVHKF 563

Query: 341 GQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKL------------- 387
            Q   AS S      N  + +P T+ S+  SV  +Q  +K  S+S+L             
Sbjct: 564 RQDSNASGSGTDWEENADEETPITEISEVRSVPMKQ-LKKGSSISRLWKSCPNNGENYKI 622

Query: 388 -KLDEG-NG-VPNGTVSNARAM---RKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCT 441
             + EG NG + NG +S+A  M   R    GG +  DL  Q+  PD GNPH+ RGMKGC 
Sbjct: 623 ISVVEGMNGRLSNGRISSAGIMSPDRGSGKGGLSPPDLAGQWSSPDSGNPHVNRGMKGCI 682

Query: 442 EWPGVTRKINMKDKHLKAMMENQKTHLRKVLK 473
           EWP   +K ++K K L+A ME+QK  LR+VLK
Sbjct: 683 EWPRGAQKNSLKAKLLEARMESQKIQLRQVLK 714

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356499392|ref|XP_003518525.1| PREDICTED: uncharacterized protein LOC100799140 [Glycine max]

 Score =  376 bits (965), Expect = e-101,   Method: Compositional matrix adjust.
 Identities = 220/514 (42%), Positives = 317/514 (61%), Gaps = 47/514 (9%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKWDP CSKTA EA  +Y+H+K ++ + +  S +SAL AEL QAR RI ELE EH 
Sbjct: 181 MEGATKWDPLCSKTADEAQHIYSHMKHVDQKASAVSVISALGAELEQARTRIQELETEHH 240

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           SSKKK E+ ++K+ EER  W  ++H K+ A +D++K EL++ERK+R++I+ +NS+ VNEL
Sbjct: 241 SSKKKLEHFLKKVSEERAQWKSKEHEKIRAYIDDIKAELNQERKNRQRIEIVNSRLVNEL 300

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           A  + SAK++M  YE+E++AR+L+EE                     ++M+ REEVEEER
Sbjct: 301 ADVKLSAKRYMLDYEKERKARELIEEVCDELAKEIGEDKAEVEALKRESMKFREEVEEER 360

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKL+DAK+ALE KYSQ+NKLV ELE+F+ S +A  + M +++A+ 
Sbjct: 361 KMLQMAEVWREERVQMKLIDAKVALEEKYSQMNKLVAELESFIRSKSAEPNTMEMKEAQS 420

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           + +A   +NIQD   F Y  P SD IF+IFE+   G +A E E+EP  ++SP   ASN H
Sbjct: 421 LQQAAAAMNIQDIKGFSYEPPNSDDIFAIFEDANFG-EANEREIEPCVSHSPASLASNIH 479

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
           +VSPE N      + +H + F+D N  ++ D   WE   H EDQGS  S  G   S+N  
Sbjct: 480 MVSPEANAISKGGIQRHSDVFLDDNGDIEGDESGWETVSHVEDQGSSYSPEGSTRSLNRN 539

Query: 341 G-QGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKL------------ 387
             +  V+ +S +      G+ +P T+ S+ CS+  +Q + K  S+++L            
Sbjct: 540 HRESNVSGRSVLEWEETAGEETPITEISEVCSIPTKQAK-KVSSITRLWRSTYPNNGDNY 598

Query: 388 ---KLDEGNG-VPNGTVSNARAMRKLVDGGCNQGDLTEQFVL----PDLGNPHITRGMKG 439
               ++  NG + NG +SN   M    D G  +G L+ Q +L    P+ G+PH  RGMKG
Sbjct: 599 KIISVEGMNGRLSNGMLSNGGIMSP--DHGSGKGGLSPQDLLYQLSPESGSPHAHRGMKG 656

Query: 440 CTEWPGVTRKINMKDKHLKAMMENQKTHLRKVLK 473
           C   P   +K ++K + ++A ME+QK  LR VLK
Sbjct: 657 CI--PRTVQKNSLKARLMEARMESQKVQLRHVLK 688

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356553569|ref|XP_003545127.1| PREDICTED: uncharacterized protein LOC100795388 [Glycine max]

 Score =  368 bits (945), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 216/514 (42%), Positives = 316/514 (61%), Gaps = 47/514 (9%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKWDP CSKT+  A  +Y+H+K L+ + +  S VSAL AEL QAR RI ELE EH 
Sbjct: 180 MEGATKWDPLCSKTSEGAQHIYSHMKHLDQKASAVSVVSALGAELEQARTRIQELETEHH 239

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           SSKKK E+ ++K+ EER  W  ++H K+ A +D++K EL++ERK+R++I+ +NS+ VNEL
Sbjct: 240 SSKKKLEHFLKKVSEERAQWRSKEHEKIRAYIDDIKAELNRERKNRQRIEIVNSRLVNEL 299

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           A  + SAK++MQ YE+E++AR+L+EE                     ++M++REEVEEER
Sbjct: 300 ADVKLSAKRYMQDYEKERKARELIEEVCDELAKEIGEDKAEVEALKRESMKLREEVEEER 359

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKL+DAK+ALE KYSQ+NKLV +LE+++ S +   + M +++A+ 
Sbjct: 360 KMLQMAEVWREERVQMKLIDAKVALEEKYSQMNKLVADLESYIRSKSTEPNTMDMKEAQS 419

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           + +A   +NIQD   F Y  P SD IF+IFE+   G +A E E+E   ++SP   ASN H
Sbjct: 420 LQQAAAAMNIQDIKGFSYEPPNSDDIFAIFEDANFG-EANEREIEQYVSHSPASHASNIH 478

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
           +VSPE N+     + +  + F+D N  ++ D   WE   H EDQGS  S  G   S+N  
Sbjct: 479 MVSPEANEISKGGIQRRSDVFMDDNGDIEGDESGWETVSHVEDQGSSYSPEGSSRSLNRN 538

Query: 341 G-QGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKL------------ 387
             +  V+ +S +      G+ +P T+ S+ CS+  +Q + K  S++KL            
Sbjct: 539 HRESNVSGRSVLEWEETAGEETPITEISEVCSIPTKQAK-KVSSITKLWRSTYPNNGDNY 597

Query: 388 ---KLDEGNG-VPNGTVSNARAMRKLVDGGCNQGDLTEQFVL----PDLGNPHITRGMKG 439
               ++  NG + NG +SN   M    D G  +G L+ Q +L    P+ G+PH  +GMKG
Sbjct: 598 KIISVEGMNGRLSNGMLSNGVIMSP--DHGSGKGGLSPQDLLYQLSPESGSPHAHQGMKG 655

Query: 440 CTEWPGVTRKINMKDKHLKAMMENQKTHLRKVLK 473
           C   P   +K ++K + ++A ME+QK  LR VLK
Sbjct: 656 CI--PRTAQKNSLKARLMEARMESQKVQLRHVLK 687

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224114457|ref|XP_002316766.1| predicted protein [Populus trichocarpa] gi|222859831|gb|EEE97378.1| predicted protein [Populus trichocarpa]

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 220/503 (43%), Positives = 306/503 (60%), Gaps = 38/503 (7%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKW+P C + + E    ++ +K L+ QV+  S VSAL+AEL QAR RI ELE E +
Sbjct: 1   MEGATKWNPVCLERSDELQQSHSQLKCLDQQVSAVSVVSALEAELEQARARIQELEIERQ 60

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           SSKKK E+ ++K+ EER +W  R+H K+ A   ++K +LS ERK+R+ ++ +NSK VN+L
Sbjct: 61  SSKKKVEHFLKKVSEERAAWRSREHEKIRASFSDIKADLSHERKNRRSLEIVNSKLVNDL 120

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           A A+ SAK++MQ  E+E++AR+L+EE                     +++++REEV+EER
Sbjct: 121 ANAKVSAKRYMQDCEKERKARELIEEVCDELAKEIGEDKAEVEALKRESLKLREEVDEER 180

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKLVDAK+ALE KYS +N LV +LE FL S +AT  +  +++AE 
Sbjct: 181 RMLQMAEVWREERVQMKLVDAKVALEEKYSYMNNLVADLEVFLRSRSATQGLKEMKEAES 240

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           +I+A   ++IQD  EF Y  P  D IFSIFE++  G +  + E EP   YSP    +  +
Sbjct: 241 VIQAAASVHIQDIKEFTYEPPNQDDIFSIFEDVNFG-ETNDRESEPCIAYSPANHGAKIY 299

Query: 281 IVSPEVN--DFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSIN 338
            VSPEV+  + D NH   H   F+  N  +++D   WE   H EDQGS  S+ G  PS+N
Sbjct: 300 TVSPEVDVINKDGNH--GHSEAFVHQNGDIEEDESGWETVSHLEDQGSSYSLDGSIPSVN 357

Query: 339 SGGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQ--KACSVSKL--KLDEGNG 394
              +    S S      N    +P TD S+ CS+    PR+  KA S+++    LD  N 
Sbjct: 358 KNCRESNVSGSATEWEENACDETPITDISELCSM----PRRQLKASSITRFWRSLDGLNS 413

Query: 395 -VPNGTVSNARAMRK-LVDG--GCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPGVTRKI 450
            + NG  SNA  M    V G  G +  DL  Q+  PD  NPH+TRGMKGC +WP    K 
Sbjct: 414 RLSNGRKSNAGIMSPDKVSGESGISPPDLVGQWSSPDSVNPHMTRGMKGCIDWPR-GHKN 472

Query: 451 NMKDKHLKAMMENQKTHLRKVLK 473
           ++K K L+A ME+Q+  LR VLK
Sbjct: 473 SLKAKLLEARMESQRVQLRHVLK 495

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297737432|emb|CBI26633.3| unnamed protein product [Vitis vinifera]

 Score =  360 bits (923), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 216/512 (42%), Positives = 297/512 (58%), Gaps = 85/512 (16%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKW+P CSKT+ E   LY  +K  + QV+  S VSAL+AEL QAR RI ELE E R
Sbjct: 205 MEGATKWNPVCSKTSDEVRQLYGQMKQFDQQVSAVSVVSALEAELAQARARIDELEAERR 264

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           SSKKK E+ ++K+ EER SW  R+H K+ AI+D++K +L++ERK+R++I+ +NSK VNEL
Sbjct: 265 SSKKKLEHFLKKVSEERASWRRREHEKIRAIIDDVKTDLNRERKNRQRIELINSKLVNEL 324

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           +  + SAK+FMQ YE+E++ R++LEE                     ++M++R+E+EEER
Sbjct: 325 SDVKLSAKRFMQDYEKERKDREVLEEVCDELAKEIGDDKAEAESLKRESMKLRDEMEEER 384

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKLV AK+ALE KY+Q+NK++ ++  FL S  A  DV  +++ E 
Sbjct: 385 KMLQMAEVWREERVQMKLVAAKVALEEKYAQMNKVMADIAAFLRSKGANPDVKEMKEVES 444

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           +  A   +NIQD  EF YV P  D IFSI EE+  G +  E E+E    Y          
Sbjct: 445 LCEAAAAVNIQDVKEFTYVPPNPDDIFSILEEVNFG-EPNEREIEACAAY---------- 493

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
                      N + +H N F + N  +++D   WE   H+EDQGS  S GG DPS    
Sbjct: 494 -----------NDIRRHSNAFSEENGDIEEDESGWETVSHAEDQGSSYSPGGSDPS---- 538

Query: 341 GQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKL------------- 387
                               +P T+ S+  SV  +Q  +K  S+S+L             
Sbjct: 539 -------------------ETPITEISEVRSVPMKQ-LKKGSSISRLWKSCPNNGENYKI 578

Query: 388 -KLDEG-NG-VPNGTVSNARAM---RKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCT 441
             + EG NG + NG +S+A  M   R    GG +  DL  Q+  PD GNPH+ RGMKGC 
Sbjct: 579 ISVVEGMNGRLSNGRISSAGIMSPDRGSGKGGLSPPDLAGQWSSPDSGNPHVNRGMKGCI 638

Query: 442 EWPGVTRKINMKDKHLKAMMENQKTHLRKVLK 473
           EWP   +K ++K K L+A ME+QK  LR+VLK
Sbjct: 639 EWPRGAQKNSLKAKLLEARMESQKIQLRQVLK 670

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224078620|ref|XP_002305578.1| predicted protein [Populus trichocarpa] gi|222848542|gb|EEE86089.1| predicted protein [Populus trichocarpa]

 Score =  348 bits (894), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 216/509 (42%), Positives = 307/509 (60%), Gaps = 52/509 (10%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG  KW+P CS+   +    Y+H KLLE+QV   S  SA+Q ELVQARLRIHELE E +
Sbjct: 1   MEGAMKWEPRCSRKFSDICSFYSHTKLLENQVAMVS-ASAMQEELVQARLRIHELEAECQ 59

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           S +KK ++L +KL EER SW   +  K+ A++D+ ++++S+ERK R++++ LN K VNEL
Sbjct: 60  SYEKKVKHLQKKLGEERTSWQSSERQKIHAVIDDCENQISRERKKRQKLELLNYKLVNEL 119

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           +  +SSAKQF + YEEE++AR+++EE                    ++++RI+EE+EEER
Sbjct: 120 SNVKSSAKQFREDYEEEQKAREIMEEVCNELAYKVAEDKAEVETFKTESIRIQEEMEEER 179

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKL+DAKLALE K  Q+NKL+ +LE FL S + TLDV  LRKAEL
Sbjct: 180 KMLQMAEVWREERVQMKLIDAKLALEDKDCQMNKLITDLETFLRSRSGTLDVNELRKAEL 239

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           I +A KL+N++D  EF Y  P    I+SI+EEL+Q ++  E E+E     SP  +AS  H
Sbjct: 240 IRQAAKLVNVKDIKEFSYAPPKLSDIYSIYEELKQ-IEDNEREIEECKKSSPASNASKLH 298

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
           + S +++ + N H L+  +  I+ +N   +D+R  +   H+E QGS  S        + G
Sbjct: 299 LASSDLSAY-NYHSLQQGSTIINDDNRHLEDARGCDAVSHAEGQGSSYS--------HEG 349

Query: 341 GQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKLK------------ 388
            Q  +A +       N  Q+SPNT +    SV+GE    +A S+SKL             
Sbjct: 350 NQLPIARECD----ENEAQNSPNTQSGGVYSVTGE-SMHRASSISKLSRSAQCNNKCYEI 404

Query: 389 -LDEGNGVP-NGTVSNARAM--RKLVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWP 444
             D+ NGV  NG  SN      RK  +      D  EQ+  P+  NPH+T+G+K   +W 
Sbjct: 405 TADDSNGVALNGKFSNKETSPRRKSWECMLRHQDSMEQWSSPESVNPHVTQGIKKRFKWS 464

Query: 445 GVTRKINMKDKHLKAMMENQKTHLRKVLK 473
              +K ++K K L+A ME+QK  LR VLK
Sbjct: 465 RGIQKNSLKAKLLEARMESQKAQLRSVLK 493

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449463264|ref|XP_004149354.1| PREDICTED: uncharacterized protein LOC101221647 [Cucumis sativus]

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 218/512 (42%), Positives = 300/512 (58%), Gaps = 44/512 (8%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKW+P C KT  EA  +YN ++L+ DQ    S +SAL+AEL +A LRI EL+ E  
Sbjct: 201 MEGATKWEPACLKTPVEARQIYNQMRLV-DQQGAVSALSALEAELEEAHLRIEELQAERN 259

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           +SKKK E  +RK+ EE+  W  R+H K+ A +D++K EL++E+K+R++++ +NSK VNEL
Sbjct: 260 ASKKKLEYFLRKVSEEKALWRSREHEKVRAFIDDIKAELNREKKTRQRVEMINSKLVNEL 319

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           A A+ SAK+FMQ  E+EK+ R L+EE                     +TM++R+EV+EER
Sbjct: 320 ADAKLSAKRFMQDCEKEKKERSLVEEVCDELAKEIGEDKARIESLKRETMKLRDEVDEER 379

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERVQMKLVDAK+A+E KYSQ+  LV +LE+FL   + T DV  ++KA L
Sbjct: 380 RMLQMAEVWREERVQMKLVDAKVAVEEKYSQMRNLVADLEDFLRLRSETSDVSEMKKALL 439

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           +  A   +NIQD  EF Y     D IFS+FE++  G ++ E E+     YSP   AS   
Sbjct: 440 LREAAATVNIQDVTEFVYEPSNPDDIFSVFEDVNFG-ESNEREIGQCITYSPPNHASKVQ 498

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNG---LKKDSRSWECARHSEDQGSRCSVGGRDPSI 337
             S E N  D   + KH N FI  +NG   +++D   WE   H EDQGS  S      S+
Sbjct: 499 TASLEANVTDRIGIQKHTNSFI-AHNGIGDIEEDESGWETVSHLEDQGSSNSPEESIASV 557

Query: 338 NSGGQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQ--------KACSVSK-LK 388
               +   AS S     GNGG  SP T+ S+ CSV  +Q ++        K+CS ++  K
Sbjct: 558 TKNRRESNASVSGTEWEGNGGGDSPVTEISEVCSVPSKQLKKISSIARLWKSCSNNEGYK 617

Query: 389 LDEGNGV----PNGTVSNARAMRK---LVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCT 441
           L    G+     NG +S+A  +      V  G +  +LT Q+  PD GN H  RG KGC 
Sbjct: 618 LISLEGINARLSNGRLSSASILSADGGSVRSGISPPELTGQWSSPDSGNGHAMRGKKGCI 677

Query: 442 EWPGVTRKINMKDKHLKAMMENQKTHLRKVLK 473
             P  T K ++K K L+A ME+ K  LR+VLK
Sbjct: 678 --PRNTMKGSLKAKLLEARMESHKVQLRQVLK 707

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356524256|ref|XP_003530746.1| PREDICTED: uncharacterized protein LOC100795752 [Glycine max]

 Score =  338 bits (868), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 214/508 (42%), Positives = 309/508 (60%), Gaps = 41/508 (8%)

Query: 1   MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
           MEG TKWDP C KT+ E + +Y+ +KLL+ +V+T S VSAL+AEL QAR++I ELE E  
Sbjct: 195 MEGATKWDPVCLKTSDEEHHIYSQMKLLDQKVSTVSSVSALEAELEQARVQIQELETECH 254

Query: 61  SSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL 120
           SSKKK E+ ++K+ EER SW  ++H K+ A VD++K EL++ERKSR++I+ +NS+ VNEL
Sbjct: 255 SSKKKLEHFLKKVSEERASWRSKEHEKIRAYVDDIKSELNRERKSRQRIEIVNSRLVNEL 314

Query: 121 AKAESSAKQFMQYYEEEKRARQLLEE--------------------SKTMRIREEVEEER 160
           A A+   K++MQ YE+E++AR+L+EE                     ++M++REEVEEER
Sbjct: 315 ADAKLITKRYMQDYEKERKARELIEEICDELAKEIGEDKAEIEALKRESMKLREEVEEER 374

Query: 161 NMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAEL 220
            MLQ+AE+WREERV MKL+DAK+AL+ KYSQ+NKLV +LE FL S     +   +++A  
Sbjct: 375 RMLQMAEVWREERVHMKLIDAKVALDEKYSQMNKLVADLETFLKSINVNPNSKEMKEARS 434

Query: 221 IIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHH 280
           + +A  +++IQD   F Y     D IF+IFE+L  G ++ E E+E    YSP+  AS  H
Sbjct: 435 LQQAAAVVDIQDIKGFSYEPANPDDIFAIFEDLNFG-ESNEREIEACVAYSPVSHASKIH 493

Query: 281 IVSPEVNDFDNNHVLKHLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSG 340
            VSPE      +++ +  + F+D N  +++D   WE   H EDQGS CS  G    +N  
Sbjct: 494 TVSPEAKLISKDNLQRCSDVFMDDNGDIEEDESGWETVSHVEDQGSSCSPEGSALLVNKN 553

Query: 341 -GQGKVASKSTIMHHGNGGQHSPNTDASDECSVSGEQPRQKACSVSKL-----------K 388
             +  V+ +S +    N G  +P T+ S+ CSV  +Q + K  S+++L           K
Sbjct: 554 RRESDVSGRSVLEWEENAGLETPITEISEVCSVPAKQSK-KVSSIARLWRSGPNSGDNYK 612

Query: 389 LDEGNGVPNGTVSNARAMRK---LVDGGCNQGDLTEQFVLPDLGNPHITRGMKGCTEWPG 445
           +    G+ NG VS+   M     L +GG +  DL  Q   P+  N H  RGMKGC   P 
Sbjct: 613 IISVEGM-NGRVSSGGIMSPDWGLGNGGLSPQDLLYQLSSPESANLH-NRGMKGCI--PR 668

Query: 446 VTRKINMKDKHLKAMMENQKTHLRKVLK 473
             +K ++K + L+A ME+QK  LR VLK
Sbjct: 669 TVQKSSLKARLLEARMESQKVQLRHVLK 696

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	473
TAIR|locus:2007996	725	AT1G50660 [Arabidopsis thalian	0.693	0.452	0.345	8.3e-55
TAIR|locus:2092319	673	AT3G20350 [Arabidopsis thalian	0.841	0.591	0.355	1.3e-52
TAIR|locus:2027402	247	AT1G11690 "AT1G11690" [Arabido	0.484	0.927	0.375	2e-31
TAIR|locus:2176387	481	AT5G22310 "AT5G22310" [Arabido	0.331	0.326	0.340	1.2e-15
TAIR|locus:2080792	622	AT3G11590 [Arabidopsis thalian	0.405	0.308	0.311	7.9e-15
TAIR|locus:2010876	273	BLT "AT1G64690" [Arabidopsis t	0.245	0.424	0.368	4.8e-12
TAIR|locus:2024568	593	AT1G64180 "AT1G64180" [Arabido	0.401	0.320	0.271	1.9e-09
TAIR|locus:2160477	623	AT5G41620 "AT5G41620" [Arabido	0.281	0.213	0.276	5.4e-08
TAIR|locus:2062877	468	AT2G46250 "AT2G46250" [Arabido	0.302	0.305	0.292	2.6e-07
ZFIN|ZDB-GENE-000607-83	498	krt4 "keratin 4" [Danio rerio	0.302	0.287	0.265	2.2e-06

TAIR|locus:2007996 AT1G50660 [Arabidopsis thaliana (taxid:3702)]

 Score = 463 (168.0 bits), Expect = 8.3e-55, Sum P(2) = 8.3e-55
 Identities = 120/347 (34%), Positives = 183/347 (52%)

Query:    58 EHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117
             EH   +   +++   +  E+ +   R       +V+EL D  SK    R   D+   +  
Sbjct:   285 EHEKVRAIIDDMKTDMNREKKTRQ-RLEIVNHKLVNELAD--SKLAVKRYMQDYEKERKA 341

Query:   118 NELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMK 177
              EL   E    +  +   E+K   + L+  ++M +REEV++ER MLQ+AE+WREERVQMK
Sbjct:   342 RELI--EEVCDELAKEIGEDKAEIEALKR-ESMSLREEVDDERRMLQMAEVWREERVQMK 398

Query:   178 LVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFE 237
             L+DAK+ALE +YSQ+NKLV +LE+FL S     DV  +R+AEL+      +NIQ+  EF 
Sbjct:   399 LIDAKVALEERYSQMNKLVGDLESFLRSRDIVTDVKEVREAELLRETAASVNIQEIKEFT 458

Query:   238 YVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKH 297
             YV    D I+++FEE+  G +A + E+E    YSPI   S  H VS + N  +     +H
Sbjct:   459 YVPANPDDIYAVFEEMNLG-EAHDREMEKSVAYSPISHDSKVHTVSLDANMMNKKG--RH 515

Query:   298 LNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHHGNG 357
              + +   N  +++D   WE   H E+QGS  S  G  PS+N+       S ++     + 
Sbjct:   516 SDAYTHQNGDIEEDDSGWETVSHLEEQGSSYSPDGSIPSVNNKNHNHRHSNASSGGTESL 575

Query:   358 GQ-----HSPNTDASDECSVSGEQPRQKACSVSKL-KLDEGNGVPNG 398
             G+      +P T+ S+ CS+    PR+ +  VS + KL    G  NG
Sbjct:   576 GKVWDDTMTPTTEISEVCSI----PRRSSKKVSSIAKLWRSTGASNG 618

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0007155 "cell adhesion" evidence=RCA

GO:0010090 "trichome morphogenesis" evidence=RCA

GO:0045010 "actin nucleation" evidence=RCA

GO:0048765 "root hair cell differentiation" evidence=RCA

GO:0071555 "cell wall organization" evidence=RCA

TAIR|locus:2092319 AT3G20350 [Arabidopsis thaliana (taxid:3702)]

 Score = 545 (196.9 bits), Expect = 1.3e-52, P = 1.3e-52
 Identities = 152/427 (35%), Positives = 224/427 (52%)

Query:    58 EHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV 117
             EH   +   +++   + +E+ +   R       +V+EL D  SK    R   D+   +  
Sbjct:   262 EHEKVRAIIDDMKADMNQEKKTRQ-RLEIVNSKLVNELAD--SKLAVKRYMHDYQQERKA 318

Query:   118 NELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMK 177
              EL   E    +  +  EE+K   + L+ S++M +REEV++ER MLQ+AE+WREERVQMK
Sbjct:   319 RELI--EEVCDELAKEIEEDKAEIEALK-SESMNLREEVDDERRMLQMAEVWREERVQMK 375

Query:   178 LVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELIIR-AVKLLNIQDSDEF 236
             L+DAK+ LE KYSQ+NKLV ++E FL S   T  V  +R AEL+   A  + NIQ+  EF
Sbjct:   376 LIDAKVTLEEKYSQMNKLVGDMEAFLSSRNTT-GVKEVRVAELLRETAASVDNIQEIKEF 434

Query:   237 EYVAPASDSIFSIFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLK 296
              Y     D I  +FE++  G + ++ E E    YSP+  AS  H VSP+VN  +     +
Sbjct:   435 TYEPAKPDDILMLFEQMNMG-ENQDRESEQYVAYSPVSHASKAHTVSPDVNLINKG---R 490

Query:   297 HLNGFIDCNNGLKKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHHGN 356
             H N F D N   ++D   WE   HSE+ GS  S     P+I++         S +  +G 
Sbjct:   491 HSNAFTDQNGEFEEDDSGWETVSHSEEHGSSYSPDESIPNISNTHH----RNSNVSMNGT 546

Query:   357 GGQHSPNTDASDECSVSGEQPRQKACSVSKLKLDEGNGVPNGTVSNARAMR-KLVD---- 411
               + +   +  + CSV   Q + K  S++KL      G+ NG VSNAR    ++V     
Sbjct:   547 EYEKTLLREIKEVCSVPRRQSK-KLPSMAKL-WSSLEGM-NGRVSNARKSTVEMVSPETG 603

Query:   412 ---GGCNQGDLTEQFVL-PDLGNPHITRG-MKGCTEWPGVTRKINMKDKHLKAMMENQKT 466
                GG N  DL  Q+   PD  N ++ RG  KGC EWP    K ++K K ++A +E+QK 
Sbjct:   604 SNKGGFNTLDLVGQWSSSPDSANANLNRGGRKGCIEWPRGAHKNSLKTKLIEAQIESQKV 663

Query:   467 HLRKVLK 473
              L+ VL+
Sbjct:   664 QLKHVLE 670

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2027402 AT1G11690 "AT1G11690" [Arabidopsis thaliana (taxid:3702)]

 Score = 345 (126.5 bits), Expect = 2.0e-31, P = 2.0e-31
 Identities = 95/253 (37%), Positives = 140/253 (55%)

Query:     1 MEGVTKWDPGCSKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHR 60
             ME +T+WD G  +T    Y +       ED+   F+ V  LQ EL +A+ RI ELE E  
Sbjct:     1 MESITEWDLGSLRTY---YSVEPSENFQEDEFLDFNLVPCLQTELWKAQTRIKELEAE-- 55

Query:    61 SSKKKYENLVRKL-REERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNE 119
               K K E  +R L R +RN     K       VD LK++LSKER+ +K++   NS+   +
Sbjct:    56 --KFKSEETIRCLIRNQRNE----KEETTNPFVDYLKEKLSKEREEKKRVKAENSRLKKK 109

Query:   120 LAKAESSAKQFMQYYEE-EKRARQL---LEESK--TMRIREEVEEERNMLQLAEIWREER 173
             +   ESS  +  +  +  EK   +L   ++E K  T R+ +E EEER MLQ+AE+WREER
Sbjct:   110 ILDMESSVNRLRRERDTMEKVCEELVTRIDELKVNTRRVWDETEEERQMLQMAEMWREER 169

Query:   174 VQMKLVDAKLALEHKYSQINKLVEELENFLMS--NAATLDVMALRKAELIIRAVKLLNIQ 231
             V++K +DAKLAL+ KY ++N  V ELE  L +      ++   LR  E +I+  K + + 
Sbjct:   170 VRVKFMDAKLALQEKYEEMNLFVVELEKCLETAREVGGIEEKRLRHGEGLIKMAKSMEVV 229

Query:   232 DS----DEFEYVA 240
             DS    + FE+V+
Sbjct:   230 DSKIDFERFEFVS 242

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2176387 AT5G22310 "AT5G22310" [Arabidopsis thaliana (taxid:3702)]

 Score = 224 (83.9 bits), Expect = 1.2e-15, P = 1.2e-15
 Identities = 60/176 (34%), Positives = 100/176 (56%)

Query:    44 ELVQARLRIHELEDEHRS-SKKKYENLVRKLREERNSWYVRKHYKMEA---------IVD 93
             ELV+   RI EL D+H++ S +    L+ +L   R+S    KH   E          +++
Sbjct:   191 ELVKVLKRIGELGDDHKTASNRLISALLCELDRARSSL---KHLMSELDEEEEEKRRLIE 247

Query:    94 ELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEE---SKTM 150
              L++E   ERK R++ + +N +   EL +A+ + ++  +  + EKRA+ +LEE     T 
Sbjct:   248 SLQEEAMVERKLRRRTEKMNRRLGRELTEAKETERKMKEEMKREKRAKDVLEEVCDELTK 307

Query:   151 RI---REEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFL 203
              I   ++E+E+ER M+ +A++ REERVQMKL +AK   E KY+ + +L +EL   L
Sbjct:   308 GIGDDKKEMEKEREMMHIADVLREERVQMKLTEAKFEFEDKYAAVERLKKELRRVL 363

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080792 AT3G11590 [Arabidopsis thaliana (taxid:3702)]

 Score = 219 (82.2 bits), Expect = 7.9e-15, P = 7.9e-15
 Identities = 65/209 (31%), Positives = 115/209 (55%)

Query:    14 TAREAYCLYNHVKLLEDQVTT-FSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRK 72
             T++E   + N +   +D+ ++  S VSAL +EL +ARL++++L  EH+        L+++
Sbjct:   232 TSKELLKIINRMWGQDDRPSSSMSLVSALHSELERARLQVNQLIHEHKPENNDISYLMKR 291

Query:    73 LREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQ 132
               EE+  W   +   +EA ++ +  EL  ERK R++ + LN K   ELA+ +S+  + ++
Sbjct:   292 FAEEKAVWKSNEQEVVEAAIESVAGELEVERKLRRRFESLNKKLGKELAETKSALMKAVK 351

Query:   133 YYEEEKRARQLLEE--SKTMR-IRE---EVEE-ERNMLQLAEIWREERVQMKLVDA---- 181
               E EKRAR ++E+   +  R I E   EVEE +R   ++ E   +ER  ++L DA    
Sbjct:   352 EIENEKRARVMVEKVCDELARDISEDKAEVEELKRESFKVKEEVEKEREMLQLADALREE 411

Query:   182 ----KLA-LEHKYSQINKLVEELENFLMS 205
                 KL+  +H+  + N  V++L N L +
Sbjct:   412 RVQMKLSEAKHQLEEKNAAVDKLRNQLQT 440

GO:0005886 "plasma membrane" evidence=IDA

TAIR|locus:2010876 BLT "AT1G64690" [Arabidopsis thaliana (taxid:3702)]

 Score = 183 (69.5 bits), Expect = 4.8e-12, P = 4.8e-12
 Identities = 45/122 (36%), Positives = 78/122 (63%)

Query:    87 KMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLL-E 145
             K +  + ELK EL  ERK+R++ + +  K   ++ + E  A++  +  + ++  ++L  E
Sbjct:    79 KAQDEIKELKAELDYERKARRRAELMIKKLAKDVEE-ERMARE-AEEMQNKRLFKELSSE 136

Query:   146 ESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQI---NKLVEELENF 202
             +S+ +R++ ++EEER M +LAE+ REERVQMKL+DA+L LE K S++   N+  E   N 
Sbjct:   137 KSEMVRMKRDLEEERQMHRLAEVLREERVQMKLMDARLFLEEKLSELEEANRQGERERNR 196

Query:   203 LM 204
             +M
Sbjct:   197 MM 198

GO:0003674 "molecular_function" evidence=ND

GO:0005886 "plasma membrane" evidence=ISM

GO:0010090 "trichome morphogenesis" evidence=IMP

TAIR|locus:2024568 AT1G64180 "AT1G64180" [Arabidopsis thaliana (taxid:3702)]

 Score = 170 (64.9 bits), Expect = 1.9e-09, P = 1.9e-09
 Identities = 56/206 (27%), Positives = 106/206 (51%)

Query:    13 KTAREAYCLYNHVKLLEDQVTT-FSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71
             KT+ E   + N + +LE+Q +   S + +L+ EL  +R RI +L    ++ K+  ++ V+
Sbjct:   186 KTSTELLKVLNRIWILEEQHSANISLIKSLKTELAHSRARIKDLLRCKQADKRDMDDFVK 245

Query:    72 KLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFM 131
             +L EE+ S   ++H ++ + V  L+DE    RK RK+ + L  K   EL++ +S+    +
Sbjct:   246 QLAEEKLSKGTKEHDRLSSAVQSLEDE----RKLRKRSESLYRKLAQELSEVKSTLSNCV 301

Query:   132 QYYEEEKRARQLLE---ESKTMRIREEVEEERNMLQ-LAEIWR--EERVQMKLVDAKLAL 185
             +  E    ++++LE   +     I+    E   + Q L + W+  +E+  M L  A+  L
Sbjct:   302 KEMERGTESKKILERLCDEFAKGIKSYEREIHGLKQKLDKNWKGWDEQDHMILCIAESWL 361

Query:   186 EHKY-----SQINKLVEELENFLMSN 206
             + +      S + KL  E+E FL +N
Sbjct:   362 DERIQSGNGSALEKLEFEIETFLKTN 387

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2160477 AT5G41620 "AT5G41620" [Arabidopsis thaliana (taxid:3702)]

 Score = 157 (60.3 bits), Expect = 5.4e-08, P = 5.4e-08
 Identities = 37/134 (27%), Positives = 76/134 (56%)

Query:    13 KTAREAYCLYNHVKLLEDQ-VTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVR 71
             KT+ E   + N +  LE+Q V+  S + AL+ E+  +R+RI EL    ++ + + +++V+
Sbjct:   194 KTSTELLKVLNRIWSLEEQHVSNISLIKALKTEVAHSRVRIKELLRYQQADRHELDSVVK 253

Query:    72 KLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFM 131
             +L EE+     ++  +M + V  ++  L  ERK RK+ + L+ K   EL++ +SS    +
Sbjct:   254 QLAEEKLLSKNKEVERMSSAVQSVRKALEDERKLRKRSESLHRKMARELSEVKSSLSNCV 313

Query:   132 QYYEEEKRARQLLE 145
             +  E   ++ +++E
Sbjct:   314 KELERGSKSNKMME 327

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005886 "plasma membrane" evidence=IDA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:2062877 AT2G46250 "AT2G46250" [Arabidopsis thaliana (taxid:3702)]

 Score = 149 (57.5 bits), Expect = 2.6e-07, P = 2.6e-07
 Identities = 50/171 (29%), Positives = 87/171 (50%)

Query:    23 NHVKLLEDQVTT-FSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWY 81
             N +  LE+Q T   S V AL+ EL + R  I E++      KK  +  +RK +EE     
Sbjct:   170 NRIWSLEEQNTANMSLVRALKMELDECRAEIKEVQQR----KKLSDRPLRKKKEEE---- 221

Query:    82 VRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRAR 141
                  +++ +   +K EL  ERK RK+ + L+ K   EL +A+    + ++  E+E + R
Sbjct:   222 -----EVKDVFRSIKRELDDERKVRKESETLHRKLTRELCEAKHCLSKALKDLEKETQER 276

Query:   142 QLLE-------------ESKTMRI-REEVEEERNMLQLAEIWREERVQMKL 178
              ++E             E K  RI ++    ++ ++Q+AE+W ++R+QMKL
Sbjct:   277 VVVENLCDEFAKAVKDYEDKVRRIGKKSPVSDKVIVQIAEVWSDQRLQMKL 327

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0016556 "mRNA modification" evidence=RCA

ZFIN|ZDB-GENE-000607-83 krt4 "keratin 4" [Danio rerio (taxid:7955)]

 Score = 141 (54.7 bits), Expect = 2.2e-06, P = 2.2e-06
 Identities = 39/147 (26%), Positives = 78/147 (53%)

Query:    63 KKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAK 122
             + +YE++  + R E  SWY +K  +M++   +  D+L   +    +++ + ++  NE+  
Sbjct:   288 RAQYEDIANRSRAEAESWYKQKFEEMQSTAGQYGDDLRSTKAEIAELNRMIARLQNEIDA 347

Query:   123 AESS-AKQFMQYYEEEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDA 181
              ++  A    Q  E E+R    ++++K +RIRE  E  +   Q  ++ R+ R   +L++ 
Sbjct:   348 VKAQRANLEAQIAEAEERGELAVKDAK-LRIRELEEALQRAKQ--DMARQVREYQELMNV 404

Query:   182 KLALEHKYSQINKLVEELENFLMSNAA 208
             KLAL+ + +   KL+E  E+ L S  A
Sbjct:   405 KLALDIEIATYRKLLEGEESRLSSGGA 431

GO:0045095 "keratin filament" evidence=IEA

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005882 "intermediate filament" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00010750001 SubName- Full=Chromosome chr10 scaffold_282, whole genome shotgun sequence; (737 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	473
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	5e-05
pfam09731	493	pfam09731, Mitofilin, Mitochondrial inner membrane	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	2e-04
TIGR02169	1164	TIGR02169, SMC_prok_A, chromosome segregation prot	5e-04
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.001
COG3206	458	COG3206, GumC, Uncharacterized protein involved in	0.002
COG1196	1163	COG1196, Smc, Chromosome segregation ATPases [Cell	0.003
TIGR02168	1179	TIGR02168, SMC_prok_B, chromosome segregation prot	0.003

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 45.5 bits (108), Expect = 5e-05
 Identities = 34/203 (16%), Positives = 74/203 (36%), Gaps = 6/203 (2%)

Query: 40  ALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDEL 99
            LQ EL +A   I EL+ E    +++ E L  +L E +         ++  + + L++  
Sbjct: 257 ELQEELEEAEKEIEELKSELEELREELEELQEELLELKEE-IEELEGEISLLRERLEELE 315

Query: 100 SKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEE 159
           ++  +  ++++ L  K      + E       +  +      +  EE +        E E
Sbjct: 316 NELEELEERLEELKEKIEALKEELEERETLLEELEQLLAELEEAKEELEEKLSALLEELE 375

Query: 160 RNMLQLAEIWREERVQMKLVDAKLA-----LEHKYSQINKLVEELENFLMSNAATLDVMA 214
                L E   E   ++  +  +L      +E    ++ +L E LE+           + 
Sbjct: 376 ELFEALREELAELEAELAEIRNELEELKREIESLEERLERLSERLEDLKEELKELEAELE 435

Query: 215 LRKAELIIRAVKLLNIQDSDEFE 237
             + EL     +L  +++  E  
Sbjct: 436 ELQTELEELNEELEELEEQLEEL 458

Length = 1163

>gnl|CDD|220369 pfam09731, Mitofilin, Mitochondrial inner membrane protein

 Score = 43.5 bits (103), Expect = 2e-04
 Identities = 59/215 (27%), Positives = 96/215 (44%), Gaps = 24/215 (11%)

Query: 38  VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKD 97
           +  L  +L  A L+  E E+  R+ K+K E L+ KL EE  +   R   K  A+  +L+ 
Sbjct: 172 LDQLSKKL--AELKAEEEEELERALKEKREELLSKLEEELLA---RLESKEAALEKQLRL 226

Query: 98  ELSKERK-SRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEV 156
           E  +E++  RK+      K   EL +   + +Q ++   E       L+      I+E+V
Sbjct: 227 EFEREKEELRKK---YEEKLRQELERQAEAHEQKLK--NELALQAIELQREFNKEIKEKV 281

Query: 157 EEERN--MLQLAEIW-REERVQMKLVDAKLALE--HKYSQINKLVEELENFLMSNAATLD 211
           EEERN  + +LAE+  R + ++  L     A +  HK  Q+   VE L    + + +   
Sbjct: 282 EEERNGRLAKLAELNSRLKGLEKALDSRSEAEDENHKVQQLWLAVEAL-KSALKSGSAGS 340

Query: 212 VMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSI 246
              L K    + A+K L   D    E V  A  S+
Sbjct: 341 PRPLVKE---LDALKELAKDD----ELVDAALASL 368

Mitofilin controls mitochondrial cristae morphology. Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence rich in positive-charged and hydroxylated residues and a membrane anchor domain. In addition, it has three centrally located coiled coil domains. Length = 493

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 43.9 bits (104), Expect = 2e-04
 Identities = 37/165 (22%), Positives = 68/165 (41%), Gaps = 12/165 (7%)

Query: 37   FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELK 96
                L+ EL +    + +LE      KK+ + L  +LRE       RK  ++EA +++ +
Sbjct: 862  KKEELEEELEELEAALRDLESRLGDLKKERDELEAQLRELE-----RKIEELEAQIEKKR 916

Query: 97   DELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEV 156
              L  E K++ +          EL++ E    +  +  EEE     +  E + +      
Sbjct: 917  KRL-SELKAKLEALE------EELSEIEDPKGEDEEIPEEELSLEDVQAELQRVEEEIRA 969

Query: 157  EEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELEN 201
             E  NML + E     +   +L + +  LE +   I + +EE E 
Sbjct: 970  LEPVNMLAIQEYEEVLKRLDELKEKRAKLEEERKAILERIEEYEK 1014

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|233758 TIGR02169, SMC_prok_A, chromosome segregation protein SMC, primarily archaeal type

 Score = 42.4 bits (100), Expect = 5e-04
 Identities = 41/165 (24%), Positives = 72/165 (43%), Gaps = 24/165 (14%)

Query: 41  LQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELS 100
           L+AE+      I E E E     +  E  + KL  E +        K+ A ++EL+ E+ 
Sbjct: 299 LEAEIASLERSIAEKERE----LEDAEERLAKLEAEID--------KLLAEIEELEREIE 346

Query: 101 KERKSRKQIDFLNSKFVNELAKAESS-AKQFMQYYEEEKRARQLLEESKTMRIR-EEVEE 158
           +ERK R ++         E A+ +        +  E +K   +  +E K  R + E+++ 
Sbjct: 347 EERKRRDKL-------TEEYAELKEELEDLRAELEEVDKEFAETRDELKDYREKLEKLKR 399

Query: 159 ERNMLQLAE---IWREERVQMKLVDAKLALEHKYSQINKLVEELE 200
           E N L+          +R+  +L D   A+    ++IN+L EE E
Sbjct: 400 EINELKRELDRLQEELQRLSEELADLNAAIAGIEAKINELEEEKE 444

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1164

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.9 bits (96), Expect = 0.001
 Identities = 47/224 (20%), Positives = 104/224 (46%), Gaps = 16/224 (7%)

Query: 38  VSALQAELVQARLRIHELEDEHRSSKKKYENL---VRKLREERNSWYVRKHYKMEAIVDE 94
           ++AL+ EL Q + R+ ELE+E    +++ E L   + +L EE  S       K++  ++E
Sbjct: 725 LAALEEELEQLQSRLEELEEELEELEEELEELQERLEELEEELES-LEEALAKLKEEIEE 783

Query: 95  LKDELSKERKSRK----QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEE--SK 148
           L+++    ++  +    +++    +      + ES  ++  +  +E +   + +EE   K
Sbjct: 784 LEEKRQALQEELEELEEELEEAERRLDALERELESLEQRRERLEQEIEELEEEIEELEEK 843

Query: 149 TMRIREEVEEERNMLQLAEIWREE-RVQMKLVDAKLA-LEHKYSQINKLVEELENFLMSN 206
              + EE+EE    L+  +   EE   + + ++ +L  LE +  ++ + + ELE+ L   
Sbjct: 844 LDELEEELEELEKELEELKEELEELEAEKEELEDELKELEEEKEELEEELRELESELAEL 903

Query: 207 AATLDVMALRKAELIIR----AVKLLNIQDSDEFEYVAPASDSI 246
              ++ +  R  EL  +     V+L  +++  E EY       +
Sbjct: 904 KEEIEKLRERLEELEAKLERLEVELPELEEELEEEYEDTLETEL 947

Length = 1163

>gnl|CDD|225747 COG3206, GumC, Uncharacterized protein involved in exopolysaccharide biosynthesis [Cell envelope biogenesis, outer membrane]

 Score = 40.1 bits (94), Expect = 0.002
 Identities = 39/166 (23%), Positives = 59/166 (35%), Gaps = 15/166 (9%)

Query: 92  VDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMR 151
           +D+L + L   R  R ++  L+    N+   A   A    Q Y  ++   QL    +   
Sbjct: 140 LDDLLESLKVLRAGRSRVIELS-YTSNDPKLAAKLANALAQAYLADQLEAQLEAFRRASD 198

Query: 152 IREEVEEE-RNMLQLAEIWREE-RVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAAT 209
             +E  EE R  LQ AE   E+ R Q  L DA            +L+ E +  L +    
Sbjct: 199 SLDERLEELRARLQEAEAQVEDFRAQHGLTDA---------ARGQLLSEQQ--LSALNTQ 247

Query: 210 LDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQ 255
           L     R A+   R   LL +                    ++LRQ
Sbjct: 248 LQSARARLAQAEARLASLLQLLPLGREAAALREVLE-SPTIQDLRQ 292

Length = 458

>gnl|CDD|224117 COG1196, Smc, Chromosome segregation ATPases [Cell division and chromosome partitioning]

 Score = 40.1 bits (94), Expect = 0.003
 Identities = 49/238 (20%), Positives = 94/238 (39%), Gaps = 31/238 (13%)

Query: 40  ALQAELVQARLRIHELEDE------HRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVD 93
             +  L +    + ELE +           ++Y+ L  +LRE   +  + K  ++   ++
Sbjct: 183 RTEENLERLEDLLEELEKQLEKLERQAEKAERYQELKAELRELELALLLAKLKELRKELE 242

Query: 94  ELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQ--LLEESKTMR 151
           EL++ELS+  +  +++     + + E  K     K  ++   EE    Q  LLE  +   
Sbjct: 243 ELEEELSRLEEELEEL----QEELEEAEKEIEELKSELEELREELEELQEELLELKEE-- 296

Query: 152 IREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLD 211
             EE+E E ++L+      E  ++      +  L+ K   + + +EE E  L      L 
Sbjct: 297 -IEELEGEISLLRERLEELENELEELEERLE-ELKEKIEALKEELEERETLLEELEQLLA 354

Query: 212 VMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAREMEVEPLTN 269
            +   K E        L  + S   E        +  +FE LR+ +   E E+  + N
Sbjct: 355 ELEEAKEE--------LEEKLSALLE-------ELEELFEALREELAELEAELAEIRN 397

Length = 1163

>gnl|CDD|233757 TIGR02168, SMC_prok_B, chromosome segregation protein SMC, common bacterial type

 Score = 40.0 bits (94), Expect = 0.003
 Identities = 48/236 (20%), Positives = 96/236 (40%), Gaps = 18/236 (7%)

Query: 39  SALQAELVQARLRIHELEDEHRSSKKKYENLVRKLRE-ERNSWYVRKHYKMEAIVDELKD 97
             L+ +L + RL + ELE+E    +K+   L  ++   E+     +   +  A ++   +
Sbjct: 263 QELEEKLEELRLEVSELEEEIEELQKELYALANEISRLEQQ---KQILRERLANLERQLE 319

Query: 98  ELSKER-KSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEV 156
           EL  +  +   ++D L  +      K E   ++      E +     LEE +     EE+
Sbjct: 320 ELEAQLEELESKLDELAEELAELEEKLEELKEELESLEAELEELEAELEELE--SRLEEL 377

Query: 157 EEERNMLQLAEIWREERVQMKLVDAKLALEHKY--SQINKLVEELENFLMSNAATLDVMA 214
           EE+   L      R +  Q++L  A L  E +   +++ +L +  E         L  + 
Sbjct: 378 EEQLETL------RSKVAQLELQIASLNNEIERLEARLERLEDRRERLQQEIEELLKKLE 431

Query: 215 LRKAELIIRAVKLLNIQDSD---EFEYVAPASDSIFSIFEELRQGVDAREMEVEPL 267
             + + +   ++ L  +  +   E E +  A + +    EE  Q +DA E E+  L
Sbjct: 432 EAELKELQAELEELEEELEELQEELERLEEALEELREELEEAEQALDAAERELAQL 487

SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle [Cellular processes, Cell division, DNA metabolism, Chromosome-associated proteins]. Length = 1179

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	473
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	97.14
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	96.42
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	96.22
KOG0977	546	consensus Nuclear envelope protein lamin, intermed	95.94
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	94.22
PF00038	312	Filament: Intermediate filament protein; InterPro:	93.62
PF09726	697	Macoilin: Transmembrane protein; InterPro: IPR0191	93.16
PF06705	247	SF-assemblin: SF-assemblin/beta giardin	92.9
PF00038	312	Filament: Intermediate filament protein; InterPro:	92.15
KOG0161	1930	consensus Myosin class II heavy chain [Cytoskeleto	91.73
KOG0612	1317	consensus Rho-associated, coiled-coil containing p	91.5
KOG0971	1243	consensus Microtubule-associated protein dynactin	91.41
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	90.37
PF07798	177	DUF1640: Protein of unknown function (DUF1640); In	89.93
KOG0964	1200	consensus Structural maintenance of chromosome pro	88.54
KOG0976	1265	consensus Rho/Rac1-interacting serine/threonine ki	88.39
PF07888	546	CALCOCO1: Calcium binding and coiled-coil domain (	88.15
PF05701	522	WEMBL: Weak chloroplast movement under blue light;	87.65
KOG0163	1259	consensus Myosin class VI heavy chain [Cytoskeleto	87.22
KOG0996	1293	consensus Structural maintenance of chromosome pro	87.17
PF13851	201	GAS: Growth-arrest specific micro-tubule binding	85.36
COG1196	1163	Smc Chromosome segregation ATPases [Cell division	84.12
PF09731	582	Mitofilin: Mitochondrial inner membrane protein; I	84.1
PF12128	1201	DUF3584: Protein of unknown function (DUF3584); In	84.06
PF05667	594	DUF812: Protein of unknown function (DUF812); Inte	83.53
PF14915	305	CCDC144C: CCDC144C protein coiled-coil region	82.71
PF11559	151	ADIP: Afadin- and alpha -actinin-Binding; InterPro	81.34
PF10473	140	CENP-F_leu_zip: Leucine-rich repeats of kinetochor	80.29
KOG4593	716	consensus Mitotic checkpoint protein MAD1 [Cell cy	80.09

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=97.14  E-value=0.62  Score=51.49  Aligned_cols=100  Identities=19%  Similarity=0.221  Sum_probs=54.5

Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH-HH----HHHHh------------------h-hhHhhhhH-HHhHHH
Q 045851          108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRA-RQ----LLEES------------------K-TMRIREEV-EEERNM  162 (473)
Q Consensus       108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~Erka-Re----llE~v------------------e-s~k~reE~-eeER~M  162 (473)
                      -++.-.-.|++||+++...-.+.+.||-.-|-. -.    |-+..                  . +...++++ +--+++
T Consensus       301 aSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lke~~~q~~qEk~~l~~~~e~~k~~ie~L~~el  380 (546)
T PF07888_consen  301 ASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELKEGRSQWAQEKQALQHSAEADKDEIEKLSREL  380 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence            345556677888888777766666666554421 01    11110                  0 01112222 234556


Q ss_pred             HHhhhhhhhhhhh----------------hhHhhhhhhhhhhhHHHHHHHHHHHHHHhhhc
Q 045851          163 LQLAEIWREERVQ----------------MKLVDAKLALEHKYSQINKLVEELENFLMSNA  207 (473)
Q Consensus       163 LqmAEvWREERVQ----------------MKL~eAk~~leeK~s~ldkL~~elE~FL~sk~  207 (473)
                      .++++...|||++                +.|+|++-.|.|+.+.+-.++-|=|-+..-+.
T Consensus       381 ~~~e~~lqEer~E~qkL~~ql~ke~D~n~vqlsE~~rel~Elks~lrv~qkEKEql~~EkQ  441 (546)
T PF07888_consen  381 QMLEEHLQEERMERQKLEKQLGKEKDCNRVQLSENRRELQELKSSLRVAQKEKEQLQEEKQ  441 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            6666666666543                45666666666766666666666666666553

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=96.42  E-value=0.31  Score=55.08  Aligned_cols=66  Identities=29%  Similarity=0.363  Sum_probs=55.1

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhH
Q 045851           34 TFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDF  111 (473)
Q Consensus        34 ~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~  111 (473)
                      .=+-|..|+.|-++.+.+++.|.+-++..+..|..|=|+|++|+..+-.            +-..|..|||.|+..|.
T Consensus       458 lk~eL~qlr~ene~Lq~Kl~~L~~aRq~DKq~l~~LEkrL~eE~~~R~~------------lEkQL~eErk~r~~ee~  523 (697)
T PF09726_consen  458 LKSELSQLRQENEQLQNKLQNLVQARQQDKQSLQQLEKRLAEERRQRAS------------LEKQLQEERKARKEEEE  523 (697)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHhHHHH
Confidence            3356788999999999999999999999999999999999999775443            33479999999998776

; GO: 0016021 integral to membrane

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=96.22  E-value=1.8  Score=48.07  Aligned_cols=96  Identities=19%  Similarity=0.297  Sum_probs=56.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH----------------HhHhhhhhhhHHHHHHHHHHHHHHHHH
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR----------------EERNSWYVRKHYKMEAIVDELKDELSK  101 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kqla----------------EEK~~wKskE~eki~a~i~slk~ELe~  101 (473)
                      |..|+.|+..++.+..+.+++....+.+++..+..++                ||....=.+|-.+|...|..++.+|++
T Consensus       115 i~kl~~e~~elr~~~~~~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk~en~rl~~~l~~~r~~ld~  194 (546)
T KOG0977|consen  115 ITKLREELKELRKKLEKAEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLKAENSRLREELARARKQLDD  194 (546)
T ss_pred             HHHhHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence            4555555555555555555555555555553332221                233334445667777777777777777


Q ss_pred             HHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHH
Q 045851          102 ERKSRKQIDFLNSKFVNELAKAESSAKQFMQY  133 (473)
Q Consensus       102 ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lke  133 (473)
                      |.-+|...+.-..=|-.||.=.+...+..+.+
T Consensus       195 Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e  226 (546)
T KOG0977|consen  195 ETLLRVDLQNRVQTLLEELAFLKRIHKQEIEE  226 (546)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHHhccHHHHHH
Confidence            77777777766666766666666555554443

>KOG0977 consensus Nuclear envelope protein lamin, intermediate filament superfamily [Cell cycle control, cell division, chromosome partitioning; Nuclear structure]

Probab=95.94  E-value=1.2  Score=49.20  Aligned_cols=162  Identities=17%  Similarity=0.204  Sum_probs=104.3

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHH---HHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851           41 LQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKM---EAIVDELKDELSKERKSRKQIDFLNSKFV  117 (473)
Q Consensus        41 Lk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki---~a~i~slk~ELe~ERk~Rkr~E~ln~KL~  117 (473)
                      ++.-|+.+.....+|+.+....+.+++.|.+++.+ +.--..-.++++   ...+-.+.+|+.-=++..+.+|.-...|.
T Consensus        97 ar~~l~e~~~~ra~~e~ei~kl~~e~~elr~~~~~-~~k~~~~~re~~~~~~~~l~~leAe~~~~krr~~~le~e~~~Lk  175 (546)
T KOG0977|consen   97 ARKLLDETARERAKLEIEITKLREELKELRKKLEK-AEKERRGAREKLDDYLSRLSELEAEINTLKRRIKALEDELKRLK  175 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-HHHHHhhhHHHHHHHhhhhhhhhhHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445555555555555555555555532 211111122333   35677888888888888888999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH--------HHHHHHHHhhhhH--hhhhHHHhHHHHHhhh--hhhhh---hhhhhHhhhh
Q 045851          118 NELAKAESSAKQFMQYYEEEK--------RARQLLEESKTMR--IREEVEEERNMLQLAE--IWREE---RVQMKLVDAK  182 (473)
Q Consensus       118 ~ELaE~Kss~~~~lkelE~Er--------kaRellE~ves~k--~reE~eeER~MLqmAE--vWREE---RVQMKL~eAk  182 (473)
                      +|.+-....+..+.+.++.|.        +...|+|++..++  ...|+.++|.+.+-.=  -=|++   ..|+-+.|-+
T Consensus       176 ~en~rl~~~l~~~r~~ld~Etllr~d~~n~~q~Lleel~f~~~~h~~eI~e~~~~~~rd~t~~~r~~F~~eL~~Ai~eiR  255 (546)
T KOG0977|consen  176 AENSRLREELARARKQLDDETLLRVDLQNRVQTLLEELAFLKRIHKQEIEEERRKARRDTTADNREYFKNELALAIREIR  255 (546)
T ss_pred             HHhhhhHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHhhcccccchHHHHHHHHHHHHHHH
Confidence            999999999999998888887        5566788885544  3467888888877654  22222   3455555555


Q ss_pred             hhhhhhhHHHHHHHHHHHHHHhhh
Q 045851          183 LALEHKYSQINKLVEELENFLMSN  206 (473)
Q Consensus       183 ~~leeK~s~ldkL~~elE~FL~sk  206 (473)
                      .+++.   ++..-+.|||...+.+
T Consensus       256 aqye~---~~~~nR~diE~~Y~~k  276 (546)
T KOG0977|consen  256 AQYEA---ISRQNRKDIESWYKRK  276 (546)
T ss_pred             HHHHH---HHHHhHHHHHHHHHHH
Confidence            55543   5566778888888775

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=94.22  E-value=7.5  Score=48.91  Aligned_cols=92  Identities=22%  Similarity=0.335  Sum_probs=77.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHH--HhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 045851           37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR--EERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNS  114 (473)
Q Consensus        37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~Kqla--EEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~  114 (473)
                      =|+.|+.|+..-+.+|..|.++++.....+.+|.-.+.  +|++.--+|-..|+.+.|+++...|+.|++.|..+|..-+
T Consensus       965 ~~~~l~~e~~~~~e~~~kL~kekk~lEe~~~~l~~~l~~~eek~~~l~k~~~kle~~l~~le~~le~e~~~r~e~Ek~~r 1044 (1930)
T KOG0161|consen  965 KLKNLEEEINSLDENISKLSKEKKELEERIRELQDDLQAEEEKAKSLNKAKAKLEQQLDDLEVTLEREKRIRMELEKAKR 1044 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            37788888888888888888888887777777777665  5667777888899999999999999999999999999999


Q ss_pred             HHHHHHHHHHHHHH
Q 045851          115 KFVNELAKAESSAK  128 (473)
Q Consensus       115 KL~~ELaE~Kss~~  128 (473)
                      ||.-||...+.+..
T Consensus      1045 kle~el~~~~e~~~ 1058 (1930)
T KOG0161|consen 1045 KLEGELKDLQESIE 1058 (1930)
T ss_pred             HHHHHHHHhhhHHH
Confidence            99999976666554

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=93.62  E-value=7.8  Score=38.50  Aligned_cols=99  Identities=16%  Similarity=0.235  Sum_probs=54.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh--HhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhH
Q 045851           37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE--RNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNS  114 (473)
Q Consensus        37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE--K~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~  114 (473)
                      +-..+..||..+|..|..+..++....-+++.+...+.+=  |.....+.+..+..-|..++.+|+.+...|-.++.--.
T Consensus        48 ~~~~ye~el~~lr~~id~~~~eka~l~~e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~r~~le~~i~  127 (312)
T PF00038_consen   48 IKEMYEEELRELRRQIDDLSKEKARLELEIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLARVDLENQIQ  127 (312)
T ss_dssp             HHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhHHHHhHHhhhhHHHHhhHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhHhHHHHHHH
Confidence            3455666666666666666665555444444333333221  11111334455666667777777777777776666666


Q ss_pred             HHHHHHHHHHHHHHHHHHHHH
Q 045851          115 KFVNELAKAESSAKQFMQYYE  135 (473)
Q Consensus       115 KL~~ELaE~Kss~~~~lkelE  135 (473)
                      -|-.||.-.+....+=+.+|.
T Consensus       128 ~L~eEl~fl~~~heeEi~~L~  148 (312)
T PF00038_consen  128 SLKEELEFLKQNHEEEIEELR  148 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTS
T ss_pred             HHHHHHHHHHhhhhhhhhhhh
Confidence            666666655555444444433

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes

Probab=93.16  E-value=7.1  Score=44.49  Aligned_cols=70  Identities=24%  Similarity=0.334  Sum_probs=45.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHH--------------hhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH
Q 045851           37 FVSALQAELVQARLRIHELEDE--------------HRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKE  102 (473)
Q Consensus        37 lv~aLk~EL~~Ar~rI~eL~~E--------------~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~E  102 (473)
                      -|+.|++||.++|..=.||-..              -+..+++.|.|-.++.+=.     +.+.+=+..++.|-..|.+|
T Consensus       426 dvkkLraeLq~~Rq~E~ELRsqis~l~~~Er~lk~eL~qlr~ene~Lq~Kl~~L~-----~aRq~DKq~l~~LEkrL~eE  500 (697)
T PF09726_consen  426 DVKKLRAELQSSRQSEQELRSQISSLTNNERSLKSELSQLRQENEQLQNKLQNLV-----QARQQDKQSLQQLEKRLAEE  500 (697)
T ss_pred             HHHHHHHHHHhhhhhHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHH
Confidence            3788888988887766665444              2233445555555444332     22333456788888889999


Q ss_pred             HHhhhhhhH
Q 045851          103 RKSRKQIDF  111 (473)
Q Consensus       103 Rk~Rkr~E~  111 (473)
                      |+.|..+|.
T Consensus       501 ~~~R~~lEk  509 (697)
T PF09726_consen  501 RRQRASLEK  509 (697)
T ss_pred             HHHHHHHHH
Confidence            999988875

; GO: 0016021 integral to membrane

>PF06705 SF-assemblin: SF-assemblin/beta giardin

Probab=92.90  E-value=10  Score=37.22  Aligned_cols=75  Identities=25%  Similarity=0.470  Sum_probs=47.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHhhhhHHHhH
Q 045851           84 KHYKMEAIVDELKDELSKERKSRKQ-IDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES--KTMRIREEVEEER  160 (473)
Q Consensus        84 E~eki~a~i~slk~ELe~ERk~Rkr-~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v--es~k~reE~eeER  160 (473)
                      --+.+..-|..|...+..|+.-|.. .|.++..|+++|.+...+|..-..  .++.+...|+..|  ...++...++.|+
T Consensus        93 ~l~~L~~ri~~L~~~i~ee~~~r~~~ie~~~~~l~~~l~~l~~~~~~Er~--~R~erE~~i~krl~e~~~~l~~~i~~Ek  170 (247)
T PF06705_consen   93 RLDSLNDRIEALEEEIQEEKEERPQDIEELNQELVRELNELQEAFENERN--EREEREENILKRLEEEENRLQEKIEKEK  170 (247)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3344555678888899999988876 899999999999998776654322  2333333444444  3344444444444

>PF00038 Filament: Intermediate filament protein; InterPro: IPR016044 Intermediate filaments (IF) [, , ] are proteins which are primordial components of the cytoskeleton and the nuclear envelope

Probab=92.15  E-value=13  Score=36.84  Aligned_cols=75  Identities=24%  Similarity=0.351  Sum_probs=51.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhh-hhHHhHH
Q 045851           37 FVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQ-IDFLNSK  115 (473)
Q Consensus        37 lv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr-~E~ln~K  115 (473)
                      -+..|+.+++..+.+..+..+.+.....++..|-+.+.++-++     +..+...|+.+++||+.=++.... ++.|-.+
T Consensus        76 e~~~l~~e~~~~r~k~e~e~~~~~~le~el~~lrk~ld~~~~~-----r~~le~~i~~L~eEl~fl~~~heeEi~~L~~~  150 (312)
T PF00038_consen   76 EIDNLKEELEDLRRKYEEELAERKDLEEELESLRKDLDEETLA-----RVDLENQIQSLKEELEFLKQNHEEEIEELREQ  150 (312)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSTT
T ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhh-----HhHHHHHHHHHHHHHHHHHhhhhhhhhhhhhc
Confidence            3566777777777777777777777777777777777776653     344666789999999887765443 4444444


Q ss_pred             H
Q 045851          116 F  116 (473)
Q Consensus       116 L  116 (473)
                      +
T Consensus       151 ~  151 (312)
T PF00038_consen  151 I  151 (312)
T ss_dssp             -
T ss_pred             c
Confidence            4

They generally form filamentous structures 8 to 14 nm wide. IF proteins are members of a very large multigene family of proteins which has been subdivided in five major subgroups: Type I: Acidic cytokeratins. Type II: Basic cytokeratins. Type III: Vimentin, desmin, glial fibrillary acidic protein (GFAP), peripherin, and plasticin. Type IV: Neurofilaments L, H and M, alpha-internexin and nestin. Type V: Nuclear lamins A, B1, B2 and C. All IF proteins are structurally similar in that they consist of: a central rod domain comprising some 300 to 350 residues which is arranged in coiled-coiled alpha-helices, with at least two short characteristic interruptions; a N-terminal non-helical domain (head) of variable length; and a C-terminal domain (tail) which is also non-helical, and which shows extreme length variation between different IF proteins. While IF proteins are evolutionary and structurally related, they have limited sequence homologies except in several regions of the rod domain. This entry represents the central rod domain found in IF proteins.; PDB: 3TNU_B 3KLT_D 1GK4_F 3TRT_A 3G1E_A 3UF1_C 1GK6_B 1GK7_A 3TYY_B 3V4W_A ....

>KOG0161 consensus Myosin class II heavy chain [Cytoskeleton]

Probab=91.73  E-value=30  Score=43.91  Aligned_cols=83  Identities=22%  Similarity=0.343  Sum_probs=59.4

Q ss_pred             HHHHHHHHHHHhhhchhhHHHHHHHHHHhHhh--hhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHH
Q 045851           48 ARLRIHELEDEHRSSKKKYENLVRKLREERNS--WYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAES  125 (473)
Q Consensus        48 Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~--wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Ks  125 (473)
                      ....+.+|..+...-.-++-.+--++.++.+.  -..|.-..+.+-|..+.++|+.||..|.++|...+.|+.||.+.+-
T Consensus      1060 ~~~~~~el~~~l~kke~El~~l~~k~e~e~~~~~~l~k~i~eL~~~i~el~e~le~er~~r~K~ek~r~dL~~ele~l~~ 1139 (1930)
T KOG0161|consen 1060 LKKQKEELDNQLKKKESELSQLQSKLEDEQAEVAQLQKQIKELEARIKELEEELEAERASRAKAERQRRDLSEELEELKE 1139 (1930)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444455555555555666666677666543  3344555677889999999999999999999999999999998876


Q ss_pred             HHHHH
Q 045851          126 SAKQF  130 (473)
Q Consensus       126 s~~~~  130 (473)
                      -+...
T Consensus      1140 ~Lee~ 1144 (1930)
T KOG0161|consen 1140 ELEEQ 1144 (1930)
T ss_pred             HHHHH
Confidence            55443

>KOG0612 consensus Rho-associated, coiled-coil containing protein kinase [Signal transduction mechanisms]

Probab=91.50  E-value=15  Score=44.41  Aligned_cols=100  Identities=20%  Similarity=0.173  Sum_probs=62.9

Q ss_pred             HHHHHHHHHHHHHHHHhhh-----chhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851           43 AELVQARLRIHELEDEHRS-----SKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV  117 (473)
Q Consensus        43 ~EL~~Ar~rI~eL~~E~~s-----~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~  117 (473)
                      .||+.+..+++-.+.+.+.     .++++.-..     +|++-...+..++.+-|+.+++||++..+-.+++-.-+.|+.
T Consensus       468 keL~e~i~~lk~~~~el~~~q~~l~q~~~ke~~-----ek~~~~~~~~~~l~~~~~~~~eele~~q~~~~~~~~~~~kv~  542 (1317)
T KOG0612|consen  468 KELEETIEKLKSEESELQREQKALLQHEQKEVE-----EKLSEEEAKKRKLEALVRQLEEELEDAQKKNDNAADSLEKVN  542 (1317)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHH
Confidence            3555555555444444333     223333333     333334445667788888888888888777777777777777


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851          118 NELAKAESSAKQFMQYYEEEKRARQLLEES  147 (473)
Q Consensus       118 ~ELaE~Kss~~~~lkelE~ErkaRellE~v  147 (473)
                      .+..++..+.--+.-+.+..+|.|...++.
T Consensus       543 ~~rk~le~~~~d~~~e~~~~~kl~~~~~e~  572 (1317)
T KOG0612|consen  543 SLRKQLEEAELDMRAESEDAGKLRKHSKEL  572 (1317)
T ss_pred             HHHHHHHHhhhhhhhhHHHHhhHhhhhhhh
Confidence            777777766666666777777777776666

>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]

Probab=91.41  E-value=32  Score=40.97  Aligned_cols=109  Identities=21%  Similarity=0.293  Sum_probs=79.0

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHH---------HHHHHHHhHhhhhhhhHHHHHHHHHHHHHHH
Q 045851           29 EDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYEN---------LVRKLREERNSWYVRKHYKMEAIVDELKDEL   99 (473)
Q Consensus        29 Eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~---------L~KqlaEEK~~wKskE~eki~a~i~slk~EL   99 (473)
                      |-.+--|.-+.-|+.||.+||...++++.-+..++.++.+         |=|.+||||+--=--|-+-.+.-|++|-.+|
T Consensus       269 EfkSkim~qqa~Lqrel~raR~e~keaqe~ke~~k~emad~ad~iEmaTldKEmAEERaesLQ~eve~lkEr~deletdl  348 (1243)
T KOG0971|consen  269 EFKSKIMEQQADLQRELKRARKEAKEAQEAKERYKEEMADTADAIEMATLDKEMAEERAESLQQEVEALKERVDELETDL  348 (1243)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3333455667889999999999999999888888777665         4588999999777777777777787777776


Q ss_pred             HHHHH---------------hhhhhhHHhHHHHHHHHH-------HHHHHHHHHHHHHHH
Q 045851          100 SKERK---------------SRKQIDFLNSKFVNELAK-------AESSAKQFMQYYEEE  137 (473)
Q Consensus       100 e~ERk---------------~Rkr~E~ln~KL~~ELaE-------~Kss~~~~lkelE~E  137 (473)
                      |-=|-               --+++|.-|.||-.-|-.       .|--..++.+++|+-
T Consensus       349 EILKaEmeekG~~~~~~ss~qfkqlEqqN~rLKdalVrLRDlsA~ek~d~qK~~kelE~k  408 (1243)
T KOG0971|consen  349 EILKAEMEEKGSDGQAASSYQFKQLEQQNARLKDALVRLRDLSASEKQDHQKLQKELEKK  408 (1243)
T ss_pred             HHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence            64332               247899999999877644       344445555655543

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=90.37  E-value=31  Score=37.79  Aligned_cols=21  Identities=33%  Similarity=0.547  Sum_probs=10.9

Q ss_pred             hHHHHHHHHHHHHHHHHHHHH
Q 045851           84 KHYKMEAIVDELKDELSKERK  104 (473)
Q Consensus        84 E~eki~a~i~slk~ELe~ERk  104 (473)
                      |-..++..+.+|+.||+.++.
T Consensus       303 E~~~L~~~vesL~~ELe~~K~  323 (522)
T PF05701_consen  303 EASSLRASVESLRSELEKEKE  323 (522)
T ss_pred             HHHHHHHHHHHHHHHHHHHHH
Confidence            334455555555555555543

Several sequences in this family are described as being myosin heavy chain-like.

>PF07798 DUF1640: Protein of unknown function (DUF1640); InterPro: IPR024461 This family consists of uncharacterised proteins

Probab=89.93  E-value=8.5  Score=36.18  Aligned_cols=84  Identities=32%  Similarity=0.450  Sum_probs=48.0

Q ss_pred             hHHHHHHHHHHHHH-HHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHH--------HHhh
Q 045851           36 SFVSALQAELVQAR-LRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKE--------RKSR  106 (473)
Q Consensus        36 Slv~aLk~EL~~Ar-~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~E--------Rk~R  106 (473)
                      +.++.|+.|+...+ .++..|..+....+++++.|-.+|.+|-.        ++++   ++|-+++.|        +...
T Consensus        58 a~~~eLr~el~~~~k~~~~~lr~~~e~L~~eie~l~~~L~~ei~--------~l~a---~~klD~n~eK~~~r~e~~~~~  126 (177)
T PF07798_consen   58 AAIAELRSELQNSRKSEFAELRSENEKLQREIEKLRQELREEIN--------KLRA---EVKLDLNLEKGRIREEQAKQE  126 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HHHH---HHHHHHHHhHHHHHHHHHHHH
Confidence            34556666665443 55566666666666666666666655522        2222   233333322        3445


Q ss_pred             hhhhHHhHHHHHHHHHHHHHHHHH
Q 045851          107 KQIDFLNSKFVNELAKAESSAKQF  130 (473)
Q Consensus       107 kr~E~ln~KL~~ELaE~Kss~~~~  130 (473)
                      .++..+|.|+..|++.+|+.+..+
T Consensus       127 ~ki~e~~~ki~~ei~~lr~~iE~~  150 (177)
T PF07798_consen  127 LKIQELNNKIDTEIANLRTEIESL  150 (177)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            567778888888888777766554

>KOG0964 consensus Structural maintenance of chromosome protein 3 (sister chromatid cohesion complex Cohesin, subunit SMC3) [Cell cycle control, cell division, chromosome partitioning]

Probab=88.54  E-value=42  Score=40.25  Aligned_cols=174  Identities=20%  Similarity=0.278  Sum_probs=112.9

Q ss_pred             hhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHH------HHH
Q 045851           21 LYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEA------IVD   93 (473)
Q Consensus        21 vlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a------~i~   93 (473)
                      +.+.+- |+++-.++.--=.-+..+|+.++..+..|..+..    +|++.++-+.+||..-+.++.+-++.      -|.
T Consensus       235 ~~~~l~~le~~r~~~~e~s~~~~~~~~~~~d~~~~~~~~i~----ele~~l~~l~~ekeq~~a~~t~~~k~kt~lel~~k  310 (1200)
T KOG0964|consen  235 INGELERLEEDRSSAPEESEQYIDALDKVEDESEDLKCEIK----ELENKLTNLREEKEQLKARETKISKKKTKLELKIK  310 (1200)
T ss_pred             HHHHHHHHHHHHhccchhhhhHHHHHHHHHHHHHHHHhHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhH
Confidence            333333 4444433322224566788999999999876654    67777777777877777666555544      479


Q ss_pred             HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHh----------------hh-hH-
Q 045851           94 ELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYE----EEKRARQLLEES----------------KT-MR-  151 (473)
Q Consensus        94 slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE----~ErkaRellE~v----------------es-~k-  151 (473)
                      ++.++++..+.-|......+.++..++.+-+--++.....|.    .|...+.-|-.+                ++ .. 
T Consensus       311 dlq~~i~~n~q~r~~~l~~l~~~~~ki~e~~~EL~~I~Pky~~l~~ee~~~~~rl~~l~~~~~~l~~Kqgr~sqFssk~e  390 (1200)
T KOG0964|consen  311 DLQDQITGNEQQRNLALHVLQKVKDKIEEKKDELSKIEPKYNSLVDEEKRLKKRLAKLEQKQRDLLAKQGRYSQFSSKEE  390 (1200)
T ss_pred             HHHHHhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHhHHHHHHHHHHHHHHHHHHHHHhhccccccCcHHH
Confidence            999999999999999999999999888877777766555443    222222222222                11 11 


Q ss_pred             ----hhhhHH-HhHHHHHhhhhhhhhhhhhhHhhhhhhhhhhhHHHHHHHHHHH
Q 045851          152 ----IREEVE-EERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELE  200 (473)
Q Consensus       152 ----~reE~e-eER~MLqmAEvWREERVQMKL~eAk~~leeK~s~ldkL~~elE  200 (473)
                          +|.|++ -.+.+.---  =++.-.||-+.+++..+.+|...+..|...|.
T Consensus       391 RDkwir~ei~~l~~~i~~~k--e~e~~lq~e~~~~e~~l~~~~e~i~~l~~si~  442 (1200)
T KOG0964|consen  391 RDKWIRSEIEKLKRGINDTK--EQENILQKEIEDLESELKEKLEEIKELESSIN  442 (1200)
T ss_pred             HHHHHHHHHHHHHHHHhhhh--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHh
Confidence                344432 222222222  25678899999999999999988887776654

>KOG0976 consensus Rho/Rac1-interacting serine/threonine kinase Citron [Signal transduction mechanisms]

Probab=88.39  E-value=50  Score=39.05  Aligned_cols=85  Identities=22%  Similarity=0.291  Sum_probs=57.5

Q ss_pred             HHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHhHH
Q 045851           47 QARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRK-----------QIDFLNSK  115 (473)
Q Consensus        47 ~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk-----------r~E~ln~K  115 (473)
                      .....|.|+--..+..-++|+--|+++.- |.+.=.+|.--..-.|..++.||+.+++.|-           =++..|.|
T Consensus       249 k~~s~i~E~d~~lq~sak~ieE~m~qlk~-kns~L~~ElSqkeelVk~~qeeLd~lkqt~t~a~gdseqatkylh~enmk  327 (1265)
T KOG0976|consen  249 KTCSMIEEQDMDLQASAKEIEEKMRQLKA-KNSVLGDELSQKEELVKELQEELDTLKQTRTRADGDSEQATKYLHLENMK  327 (1265)
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHH
Confidence            44556666666666666666666666521 2222234545556678889999999998764           46789999


Q ss_pred             HHHHHHHHHHHHHHHHH
Q 045851          116 FVNELAKAESSAKQFMQ  132 (473)
Q Consensus       116 L~~ELaE~Kss~~~~lk  132 (473)
                      |.++.++++.++..+..
T Consensus       328 ltrqkadirc~LlEarr  344 (1265)
T KOG0976|consen  328 LTRQKADIRCALLEARR  344 (1265)
T ss_pred             HHHHHHHHHHHHHHHHH
Confidence            99999988887765543

>PF07888 CALCOCO1: Calcium binding and coiled-coil domain (CALCOCO1) like; InterPro: IPR012852 Proteins found in this family are similar to the coiled-coil transcriptional coactivator protein expressed by Mus musculus (CoCoA, Q8CGU1 from SWISSPROT)

Probab=88.15  E-value=21  Score=39.90  Aligned_cols=53  Identities=15%  Similarity=0.033  Sum_probs=34.0

Q ss_pred             ccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhh
Q 045851           29 EDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWY   81 (473)
Q Consensus        29 Eq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wK   81 (473)
                      ++..++-.-+..|..||.-|.+.=...++|-...+-+.+.|-.++++..+.||
T Consensus       297 e~lqaSqq~~~~L~~EL~~~~~~RDrt~aeLh~aRLe~aql~~qLad~~l~lk  349 (546)
T PF07888_consen  297 EQLQASQQEAELLRKELSDAVNVRDRTMAELHQARLEAAQLKLQLADASLELK  349 (546)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHH
Confidence            33333444455666666666666566666667777777777777887777664

This protein binds to a highly conserved N-terminal domain of p160 coactivators, such as GRIP1 (Q61026 from SWISSPROT), and thus enhances transcriptional activation by a number of nuclear receptors. CoCoA has a central coiled-coil region with three leucine zipper motifs, which is required for its interaction with GRIP1 and may regulate the autonomous transcriptional activation activity of the C-terminal region [].

>PF05701 WEMBL: Weak chloroplast movement under blue light; InterPro: IPR008545 This family consists of several plant proteins of unknown function

Probab=87.65  E-value=48  Score=36.39  Aligned_cols=13  Identities=23%  Similarity=0.366  Sum_probs=5.5

Q ss_pred             HHHHHHHHHHHHH
Q 045851           89 EAIVDELKDELSK  101 (473)
Q Consensus        89 ~a~i~slk~ELe~  101 (473)
                      ...|.+++.||+.
T Consensus       280 ~~~l~s~~~ELe~  292 (522)
T PF05701_consen  280 QSSLASAKKELEE  292 (522)
T ss_pred             HHHHHHHHHHHHH
Confidence            3334444444443

Several sequences in this family are described as being myosin heavy chain-like.

>KOG0163 consensus Myosin class VI heavy chain [Cytoskeleton]

Probab=87.22  E-value=22  Score=41.58  Aligned_cols=93  Identities=14%  Similarity=0.172  Sum_probs=50.6

Q ss_pred             CcchHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHH-
Q 045851           12 SKTAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEA-   90 (473)
Q Consensus        12 lkTs~ellkvlnriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a-   90 (473)
                      ++.+.+...|+++++  |...--+|-+..+-.+|+.+=..|+--.--++....+++.+++...+=-..--+|++..|.. 
T Consensus       846 ~kns~k~~ei~s~lk--e~r~e~~~~~~~~~~~id~lv~~IK~~~~tq~~~~~~~d~~~~~~e~~~~~l~sk~~q~~~e~  923 (1259)
T KOG0163|consen  846 LKNSLKTIEILSRLK--EGREEIISGANSTYRQIDDLVKKIKMPRITQREMNSEYDVAVKNYEKLVKRLDSKEQQQIEEL  923 (1259)
T ss_pred             HHhhHHHHHHHHHHh--cchHHHHhhhhhHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence            456667777777765  33444456677777788887777773222233334444444444422222222344444433 


Q ss_pred             -HHHHHHHHHHHHHHhh
Q 045851           91 -IVDELKDELSKERKSR  106 (473)
Q Consensus        91 -~i~slk~ELe~ERk~R  106 (473)
                       .++.+.+.+|.||+.|
T Consensus       924 er~rk~qE~~E~ER~rr  940 (1259)
T KOG0163|consen  924 ERLRKIQELAEAERKRR  940 (1259)
T ss_pred             HHHHHHHHHHHHHHHhh
Confidence             2456667777777654

>KOG0996 consensus Structural maintenance of chromosome protein 4 (chromosome condensation complex Condensin, subunit C) [Chromatin structure and dynamics; Cell cycle control, cell division, chromosome partitioning]

Probab=87.17  E-value=82  Score=38.52  Aligned_cols=161  Identities=20%  Similarity=0.251  Sum_probs=106.0

Q ss_pred             HHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHh--hhhhhhH-HHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHH
Q 045851           45 LVQARLRIHELEDEHRSSKKKYENLVRKLREERN--SWYVRKH-YKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELA  121 (473)
Q Consensus        45 L~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~--~wKskE~-eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELa  121 (473)
                      |.+.+++|-+...+....+..+...-.++.-+..  +.|...+ ..++.....++......++-++.+|.-+.++--.|.
T Consensus       329 ~~~~~~ki~~~~~~~~~~~e~lk~~~ek~~~e~~~~~~k~e~~~~~~~e~~~~~kn~~~~~k~~~~~~e~~~vk~~E~lK  408 (1293)
T KOG0996|consen  329 LYESRAKIAEMQEELEKIEEGLKDENEKFDIESNEEVEKNEAVKKEIKERAKELKNKFESLKKKFQDLEREDVKREEKLK  408 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445666767777777777777666666652222  2223333 347777888888888999999999999999999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHh------hhh--------------HhhhhHHHhHHHH-Hhhhhhhhh--hhhhhH
Q 045851          122 KAESSAKQFMQYYEEEKRARQLLEES------KTM--------------RIREEVEEERNML-QLAEIWREE--RVQMKL  178 (473)
Q Consensus       122 E~Kss~~~~lkelE~ErkaRellE~v------es~--------------k~reE~eeER~ML-qmAEvWREE--RVQMKL  178 (473)
                      -+.+-++++.+++|+.++.+.=+|..      +..              +.++++++.+.-| +=++.-++|  +.|-.|
T Consensus       409 ~~~~k~kKleke~ek~~~~~~e~e~~pe~~~~~i~~~~~ei~~L~~~~~~~~~~l~e~~~~l~~~t~~~~~e~~~~ekel  488 (1293)
T KOG0996|consen  409 RLTSKIKKLEKEIEKARRKKSELEKAPEKARIEIQKCQTEIEQLEELLEKEERELDEILDSLKQETEGIREEIEKLEKEL  488 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHhCchhhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHH
Confidence            99999999999999999888777776      111              1122222222222 224444444  456666


Q ss_pred             hhhhhhhhhhhHHHHHHHHHHHHHHhh
Q 045851          179 VDAKLALEHKYSQINKLVEELENFLMS  205 (473)
Q Consensus       179 ~eAk~~leeK~s~ldkL~~elE~FL~s  205 (473)
                      +.....+-+.-+.++-...||+-.+..
T Consensus       489 ~~~~~~~n~~~~e~~vaesel~~L~~~  515 (1293)
T KOG0996|consen  489 MPLLKQVNEARSELDVAESELDILLSR  515 (1293)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            666666666666666666666666655

>PF13851 GAS: Growth-arrest specific micro-tubule binding

Probab=85.36  E-value=38  Score=32.90  Aligned_cols=52  Identities=13%  Similarity=0.259  Sum_probs=35.6

Q ss_pred             chHHHHHhhhcccccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHH
Q 045851           14 TAREAYCLYNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLV   70 (473)
Q Consensus        14 Ts~ellkvlnriwleEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~   70 (473)
                      .+.++=..||.|     -..|+.+|+.|+.|+..-+.+.....+.-.....+...|.
T Consensus        10 af~~iK~YYndI-----T~~NL~lIksLKeei~emkk~e~~~~k~m~ei~~eN~~L~   61 (201)
T PF13851_consen   10 AFQEIKNYYNDI-----TLNNLELIKSLKEEIAEMKKKEERNEKLMAEISQENKRLS   61 (201)
T ss_pred             HHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345566677777     6789999999999998888766665555444444444433

>COG1196 Smc Chromosome segregation ATPases [Cell division and chromosome partitioning]

Probab=84.12  E-value=1e+02  Score=36.97  Aligned_cols=46  Identities=26%  Similarity=0.345  Sum_probs=25.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhh
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVR   83 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKsk   83 (473)
                      +..+..+|..++.++.++.........+|+.+-.++.+=+..|...
T Consensus       241 l~~~~~~l~~~~~~~~~~~~~~~~~~~~i~~~~~~~~e~~~~~~~~  286 (1163)
T COG1196         241 LEELEEELSRLEEELEELQEELEEAEKEIEELKSELEELREELEEL  286 (1163)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4555555666666666666666655556665555555544444433

>PF09731 Mitofilin: Mitochondrial inner membrane protein; InterPro: IPR019133 Mitofilin controls mitochondrial cristae morphology

Probab=84.10  E-value=70  Score=34.98  Aligned_cols=138  Identities=20%  Similarity=0.333  Sum_probs=58.4

Q ss_pred             HHHHHhhhccc--cccccc---chhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHh-HhhhhhhhHHHHH
Q 045851           16 REAYCLYNHVK--LLEDQV---TTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREE-RNSWYVRKHYKME   89 (473)
Q Consensus        16 ~ellkvlnriw--leEq~~---s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEE-K~~wKskE~eki~   89 (473)
                      .++..++|.+.  +.+...   ..-++|...+..+++...+|.+|...-+   ..+...+++..++ -..-..+....+.
T Consensus       226 ~el~~~~~~l~~~~~~~~~~~~~~~~~i~~a~~~i~~L~~~l~~l~~~~~---~~l~~~L~~q~~e~~~~~~~~~~~~le  302 (582)
T PF09731_consen  226 QELVSIFNDLIESINEGNLSESDLNSLIAHAKERIDALQKELAELKEEEE---EELERALEEQREELLSKLREELEQELE  302 (582)
T ss_pred             HHHHHhccchhhhhccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55666777775  333333   2234455555555555554444433222   2333333333332 1111122222222


Q ss_pred             ----HHHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhHHHhH
Q 045851           90 ----AIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEER  160 (473)
Q Consensus        90 ----a~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~ves~k~reE~eeER  160 (473)
                          ...+.++.+++.+|  .+--+..+.+|..||.-.+..+...+++...+.+.  -+..-+...+.+-++.||
T Consensus       303 ~~~~~~~~~~~~e~~~~~--~~l~~~~~~~L~~eL~~~~~~~~~~l~~~l~~~~~--e~~~~~~~~i~~~v~~Er  373 (582)
T PF09731_consen  303 EKRAELEEELREEFERER--EELEEKYEEELRQELKRQEEAHEEHLKNELREQAI--ELQREFEKEIKEKVEQER  373 (582)
T ss_pred             HHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHH
Confidence                22334444443333  22334445666666666666555555543332222  111113344455555555

Mitofilin is enriched in the narrow space between the inner boundary and the outer membranes, where it forms a homotypic interaction and assembles into a large multimeric protein complex []. The first 78 amino acids contain a typical amino-terminal-cleavable mitochondrial presequence (residues 1-43) rich in positive-charged and hydroxylated residues and a membrane anchor domain (residues 47-66). In addition, it has three centrally located coiled coil domains (residues 200-240,280-310 and 400-420) []. ; GO: 0031305 integral to mitochondrial inner membrane

>PF12128 DUF3584: Protein of unknown function (DUF3584); InterPro: IPR021979 This family consist of uncharacterised bacterial proteins

Probab=84.06  E-value=1e+02  Score=37.28  Aligned_cols=38  Identities=24%  Similarity=0.463  Sum_probs=26.3

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhchh-hHHHHHHHH
Q 045851           36 SFVSALQAELVQARLRIHELEDEHRSSKK-KYENLVRKL   73 (473)
Q Consensus        36 Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~-eie~L~Kql   73 (473)
                      .-++++..+|......++.+...+..+.. .|+.+...+
T Consensus       313 ~~~~~~~~~l~~~~~~L~~i~~~~~~ye~~~i~~~~~~~  351 (1201)
T PF12128_consen  313 KELSALNADLARIKSELDEIEQQKKDYEDADIEQLIARV  351 (1201)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHH
Confidence            34667777777777777777777777754 577766665

>PF05667 DUF812: Protein of unknown function (DUF812); InterPro: IPR008530 This family consists of several eukaryotic proteins of unknown function

Probab=83.53  E-value=70  Score=36.18  Aligned_cols=26  Identities=27%  Similarity=0.365  Sum_probs=15.2

Q ss_pred             HHHHHHHhhccCcCCCCcccccCCCCCchhhhHHhhh
Q 045851          218 AELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELR  254 (473)
Q Consensus       218 ae~~rqs~~Sv~~~~~kefsy~P~~~dD~~sifeel~  254 (473)
                      .+.|-.-+..+.=|.           +||+.|..|.+
T Consensus       490 t~RIlEIv~NI~KQk-----------~eI~KIl~DTr  515 (594)
T PF05667_consen  490 TRRILEIVKNIRKQK-----------EEIEKILSDTR  515 (594)
T ss_pred             HHHHHHHHHhHHHHH-----------HHHHHHHHHHH
Confidence            344555555555454           57777777765

>PF14915 CCDC144C: CCDC144C protein coiled-coil region

Probab=82.71  E-value=67  Score=33.73  Aligned_cols=155  Identities=18%  Similarity=0.263  Sum_probs=88.1

Q ss_pred             HHHHHHHHHHHHHHHHH----HHHHhhhchhhHHHHHHH--HHHh----HhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh
Q 045851           38 VSALQAELVQARLRIHE----LEDEHRSSKKKYENLVRK--LREE----RNSWYVRKHYKMEAIVDELKDELSKERKSRK  107 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~e----L~~E~~s~~~eie~L~Kq--laEE----K~~wKskE~eki~a~i~slk~ELe~ERk~Rk  107 (473)
                      |.-|+.||+.-+.+-.+    ...+....+.+.+.|-|-  |.||    ...+-+.+-.-+.|----|..+|+.|+..+.
T Consensus         8 ia~LrlEidtik~q~qekE~ky~ediei~Kekn~~Lqk~lKLneE~ltkTi~qy~~QLn~L~aENt~L~SkLe~EKq~ke   87 (305)
T PF14915_consen    8 IAMLRLEIDTIKNQNQEKEKKYLEDIEILKEKNDDLQKSLKLNEETLTKTIFQYNGQLNVLKAENTMLNSKLEKEKQNKE   87 (305)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHhHHHHHhHHHHH
Confidence            67788888877665544    344455556666666654  3444    3344555556666666667789999999998


Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hhhHhhhhHHHh---------HHHHHhhhhhhh-
Q 045851          108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES------KTMRIREEVEEE---------RNMLQLAEIWRE-  171 (473)
Q Consensus       108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v------es~k~reE~eeE---------R~MLqmAEvWRE-  171 (473)
                      |+|       .|+.-..+.+..|++|++.=-.++.=+|-.      +-..+.+-|..|         -..-|++.+=.. 
T Consensus        88 rLE-------tEiES~rsRLaaAi~d~dqsq~skrdlelafqr~rdEw~~lqdkmn~d~S~lkd~ne~LsQqLskaesK~  160 (305)
T PF14915_consen   88 RLE-------TEIESYRSRLAAAIQDHDQSQTSKRDLELAFQRARDEWVRLQDKMNSDVSNLKDNNEILSQQLSKAESKF  160 (305)
T ss_pred             HHH-------HHHHHHHHHHHHHHhhHHHHHhhHHHHHHHHHHHhhHHHHHHHHhcchHHhHHHHhHHHHHHHHHHHHHH
Confidence            765       355555555666677766655555544444      222333333222         222233332111 


Q ss_pred             hhhhhhHhhhhhhhhhhhHHHHHHHHHH
Q 045851          172 ERVQMKLVDAKLALEHKYSQINKLVEEL  199 (473)
Q Consensus       172 ERVQMKL~eAk~~leeK~s~ldkL~~el  199 (473)
                      -...++|-.++.+|-+|.-+++.++.+|
T Consensus       161 nsLe~elh~trdaLrEKtL~lE~~QrdL  188 (305)
T PF14915_consen  161 NSLEIELHHTRDALREKTLALESVQRDL  188 (305)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            1345556666666777766666665443

>PF11559 ADIP: Afadin- and alpha -actinin-Binding; InterPro: IPR021622 This family is found in mammals where it is localised at cell-cell adherens junctions [], and in Sch

Probab=81.34  E-value=42  Score=30.43  Aligned_cols=36  Identities=22%  Similarity=0.218  Sum_probs=24.2

Q ss_pred             hhhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 045851          108 QIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQL  143 (473)
Q Consensus       108 r~E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRel  143 (473)
                      .++..++.+..|+..++..+.....-|+.|-|.+++
T Consensus       105 ~~~~~~k~~kee~~klk~~~~~~~tq~~~e~rkke~  140 (151)
T PF11559_consen  105 SLEAKLKQEKEELQKLKNQLQQRKTQYEHELRKKER  140 (151)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556666677777777777777777777766553

pombe and other fungi where it anchors spindle-pole bodies to spindle microtubules []. It is a coiled-coil structure, and in pombe, it is required for anchoring the minus end of spindle microtubules to the centrosome equivalent, the spindle-pole body. The name ADIP derives from the family being composed of Afadin- and alpha -Actinin-Binding Proteins Localised at Cell-Cell Adherens Junctions.

>PF10473 CENP-F_leu_zip: Leucine-rich repeats of kinetochore protein Cenp-F/LEK1; InterPro: IPR019513 Cenp-F, a centromeric kinetochore, microtubule-binding protein consisting of two 1,600-amino acid-long coils, is essential for the full functioning of the mitotic checkpoint pathway [, ]

Probab=80.29  E-value=51  Score=30.82  Aligned_cols=96  Identities=30%  Similarity=0.306  Sum_probs=55.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHH-
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKF-  116 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL-  116 (473)
                      |-+|..||+.++..--.++.+--..+.+|..|--++            +.+..-+..+..||..=|.-+..+...=.+. 
T Consensus        26 v~~LEreLe~~q~~~e~~~~daEn~k~eie~L~~el------------~~lt~el~~L~~EL~~l~sEk~~L~k~lq~~q   93 (140)
T PF10473_consen   26 VESLERELEMSQENKECLILDAENSKAEIETLEEEL------------EELTSELNQLELELDTLRSEKENLDKELQKKQ   93 (140)
T ss_pred             HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHH------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            556666666666666666666666666666655444            2344444555555555444444444433344 


Q ss_pred             --HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 045851          117 --VNELAKAESSAKQFMQYYEEEKRARQLLEES  147 (473)
Q Consensus       117 --~~ELaE~Kss~~~~lkelE~ErkaRellE~v  147 (473)
                        +.||.-..+++.+.+++.|.+  -+.+.+..
T Consensus        94 ~kv~eLE~~~~~~~~~l~~~E~e--k~q~~e~~  124 (140)
T PF10473_consen   94 EKVSELESLNSSLENLLQEKEQE--KVQLKEES  124 (140)
T ss_pred             HHHHHHHHHhHHHHHHHHHHHHH--HHHHHHHH
Confidence              567777777788888877777  34444443

There are several leucine-rich repeats along the sequence of LEK1 that are considered to be zippers, though they do not appear to be binding DNA directly in this instance []. ; GO: 0008134 transcription factor binding, 0042803 protein homodimerization activity, 0045502 dynein binding

>KOG4593 consensus Mitotic checkpoint protein MAD1 [Cell cycle control, cell division, chromosome partitioning]

Probab=80.09  E-value=58  Score=37.58  Aligned_cols=180  Identities=17%  Similarity=0.137  Sum_probs=98.0

Q ss_pred             Hhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHH-----h----HhhhhhhhHHHHH
Q 045851           20 CLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLRE-----E----RNSWYVRKHYKME   89 (473)
Q Consensus        20 kvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaE-----E----K~~wKskE~eki~   89 (473)
                      .=+++.| ...++++-   +.-+.+-|-+-...++-+.+.+.....++.+|++.+--     +    ..---.|+.+.++
T Consensus       363 ~r~~q~lke~~k~~~~---ite~~tklk~l~etl~~~~~~~~~~~tq~~Dl~~~~~~~~~~~krl~~~l~~~tk~reqlk  439 (716)
T KOG4593|consen  363 ERARQLLKEELKQVAG---ITEEETKLKELHETLARRLQKRALLLTQERDLNRAILGSKDDEKRLAEELPQVTKEREQLK  439 (716)
T ss_pred             HHHHHHHHHHHHHHHH---hhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchHHHHHHHhHHHHHHHHHHH
Confidence            3344444 33444333   33333444455556666777777777777777665431     1    2223356677788


Q ss_pred             HHHHHHHHH-HHH----HHHhhhhh--hHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhhHhhhhHHHhH
Q 045851           90 AIVDELKDE-LSK----ERKSRKQI--DFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES--KTMRIREEVEEER  160 (473)
Q Consensus        90 a~i~slk~E-Le~----ERk~Rkr~--E~ln~KL~~ELaE~Kss~~~~lkelE~ErkaRellE~v--es~k~reE~eeER  160 (473)
                      +.|+.+..- ++.    +=-.+.=.  ..-+.+|..++.+..+.+...-+++..-|+.++++-+.  .-.+=.+.+++|-
T Consensus       440 ~lV~~~~k~~~e~e~s~~~~~~~i~~~k~~~e~le~~~kdL~s~L~~~~q~l~~qr~e~~~~~e~i~~~~ke~~~Le~En  519 (716)
T KOG4593|consen  440 GLVQKVDKHSLEMEASMEELYREITGQKKRLEKLEHELKDLQSQLSSREQSLLFQREESELLREKIEQYLKELELLEEEN  519 (716)
T ss_pred             HHHHHHHHhhHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence            877665421 111    11111111  12345789999999999999999999999999985333  2233344456666


Q ss_pred             HHHHhhhhhhhh-----------hhhhhHhhh-hhhhhhhhHHHHHHHHHHHHHHh
Q 045851          161 NMLQLAEIWREE-----------RVQMKLVDA-KLALEHKYSQINKLVEELENFLM  204 (473)
Q Consensus       161 ~MLqmAEvWREE-----------RVQMKL~eA-k~~leeK~s~ldkL~~elE~FL~  204 (473)
                      .+|.+ .+-+-.           =|||..-=+ +.... +-..+..|++|+++-..
T Consensus       520 ~rLr~-~~e~~~l~gd~~~~~~rVl~~~~npt~~~~~~-~k~~~e~LqaE~~~lk~  573 (716)
T KOG4593|consen  520 DRLRA-QLERRLLQGDYEENITRVLHMSTNPTSKARQI-KKNRLEELQAELERLKE  573 (716)
T ss_pred             HHHHH-HHHHHHHhhhhhhhccceeeecCCchHHHHHH-HHHHHHHHHHHHHHHHH
Confidence            55551 110000           123322222 22222 33366788888887666

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	473
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	8e-09
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	1e-08
1i84_S	1184	Smooth muscle myosin heavy chain; muscle protein,	3e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-08
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-04
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	4e-06
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	1e-04
1g8x_A	1010	Myosin II heavy chain fused to alpha-actinin 3; mo	4e-04

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 57.2 bits (138), Expect = 8e-09
 Identities = 40/210 (19%), Positives = 84/210 (40%), Gaps = 16/210 (7%)

Query: 26   KLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKL--REERNSWYVR 83
            KL  ++VT    +  ++ +++    + ++L  E +  +++  +L   L   EE+     +
Sbjct: 973  KLQLEKVTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTK 1032

Query: 84   KHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEE-EKRARQ 142
               K E+++ EL+  L KE KSR++++ +  K   E +       +      E + +  +
Sbjct: 1033 LKNKHESMISELEVRLKKEEKSRQELEKIKRKLEGESSDLHEQIAELQAQIAELKAQLAK 1092

Query: 143  LLEESKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKY------------S 190
              EE +    R E E  +    L +I RE    +  +   L  E                
Sbjct: 1093 KEEELQAALARLEDETSQKNNALKKI-RELESHISDLQEDLESEKAARNKAEKQKRDLSE 1151

Query: 191  QINKLVEELENFLMSNAATLDVMALRKAEL 220
            ++  L  ELE+ L + A   ++      + 
Sbjct: 1152 ELEALKTELEDTLDTTATQQELRGSDYKDD 1181

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 56.4 bits (136), Expect = 1e-08
 Identities = 34/195 (17%), Positives = 76/195 (38%), Gaps = 17/195 (8%)

Query: 24   HVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSW--Y 81
            H +L E++      + A      +A      L  + +  ++    +  ++ EE       
Sbjct: 887  HTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQELEEILHEMEARIEEEEERSQQL 946

Query: 82   VRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRAR 141
              +  KM+  + +L+++L +E  +R+++         ++ K E           +  + R
Sbjct: 947  QAEKKKMQQQMLDLEEQLEEEEAARQKLQLEKVTADGKIKKMEDDILIMEDQNNKLTKER 1006

Query: 142  QLLEESKTMRIREEVEEERNMLQLAE---------------IWREERVQMKLVDAKLALE 186
            +LLEE  +       EEE     L +               + +EE+ + +L   K  LE
Sbjct: 1007 KLLEERVSDLTTNLAEEEEKAKNLTKLKNKHESMISELEVRLKKEEKSRQELEKIKRKLE 1066

Query: 187  HKYSQINKLVEELEN 201
             + S +++ + EL+ 
Sbjct: 1067 GESSDLHEQIAELQA 1081

>1i84_S Smooth muscle myosin heavy chain; muscle protein, myosin subfragment 2, heavy meromyosin, essential light chain, motor protein; HET: MLY; 20.00A {Gallus gallus} SCOP: i.15.1.1 PDB: 3j04_A 3dtp_B 3dtp_A Length = 1184

 Score = 52.1 bits (125), Expect = 3e-07
 Identities = 48/249 (19%), Positives = 96/249 (38%), Gaps = 29/249 (11%)

Query: 38   VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLR---------EERNSWYVRKHYKM 88
            +   +    +A   + ELE +H    ++   L  KL+         EE       K  ++
Sbjct: 866  LQRTKERQQKAEAELKELEQKHTQLCEEKNLLQEKLQAETELYAEAEEMRVRLAAKKQEL 925

Query: 89   EAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESK 148
            E I+ E++  + +E +  +Q+     K   ++   E          EEE+ ARQ L+  K
Sbjct: 926  EEILHEMEARIEEEEERSQQLQAEKKKMQQQMLDLEEQ-------LEEEEAARQKLQLEK 978

Query: 149  TMRIREEVEEERNMLQLAEIWREERVQMKLVDAKL--------ALEHKYSQINKLVEELE 200
                 +  + E ++L + +   +   + KL++ ++          E K   + KL  + E
Sbjct: 979  VTADGKIKKMEDDILIMEDQNNKLTKERKLLEERVSDLTTNLAEEEEKAKNLTKLKNKHE 1038

Query: 201  NFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFSIFEELRQGVDAR 260
            + +      L      + EL  +  + L  + SD  E +A     I     EL+  +  +
Sbjct: 1039 SMISELEVRLKKEEKSRQEL-EKIKRKLEGESSDLHEQIAELQAQI----AELKAQLAKK 1093

Query: 261  EMEVEPLTN 269
            E E++    
Sbjct: 1094 EEELQAALA 1102

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 55.2 bits (132), Expect = 3e-08
 Identities = 65/384 (16%), Positives = 133/384 (34%), Gaps = 89/384 (23%)

Query: 9   PGCSKT--AREAYCLYNHVKLLEDQV---------TTFSFVSALQAELVQA--------- 48
            G  KT  A +    Y     ++ ++         +  + +  LQ  L Q          
Sbjct: 159 LGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSD 218

Query: 49  -----RLRIHELEDEHRS--SKKKYEN--LVRKLREERNSWYVRK---HYKMEAIV---- 92
                +LRIH ++ E R     K YEN  LV  L   +N+          K+  ++    
Sbjct: 219 HSSNIKLRIHSIQAELRRLLKSKPYENCLLV--LLNVQNAKAWNAFNLSCKI--LLTTRF 274

Query: 93  DELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKT--- 149
            ++ D LS    +   +D  +          E      ++Y +   R + L  E  T   
Sbjct: 275 KQVTDFLSAATTTHISLDHHSMTLT----PDEV-KSLLLKYLDC--RPQDLPREVLTTNP 327

Query: 150 MRIREEVEEERNMLQLAEIWRE---ERVQMKLVDAKL-ALEHKYSQINKLVEELENFLMS 205
            R+    E  R+ L   + W+    +++   ++++ L  LE    +  K+ + L  F  S
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLT-TIIESSLNVLEPAEYR--KMFDRLSVFPPS 384

Query: 206 NAATLDVMAL-------RKAELIIR--AVKLLNIQDSDEFEYVAPASDSIFSIFEELRQG 256
                 +++L           +++       L  +   E         SI SI+ EL+  
Sbjct: 385 AHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI------SIPSIYLELKVK 438

Query: 257 VDAR-EMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNG-------------FI 302
           ++    +    + +Y+      +  ++ P ++ +  +H+  HL               F+
Sbjct: 439 LENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFL 498

Query: 303 DCN---NGLKKDSRSWECARHSED 323
           D       ++ DS +W  +    +
Sbjct: 499 DFRFLEQKIRHDSTAWNASGSILN 522

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 53.7 bits (128), Expect = 1e-07
 Identities = 50/388 (12%), Positives = 113/388 (29%), Gaps = 93/388 (23%)

Query: 22  YNHVKLLEDQVTTFSFVSALQAELVQARLRIHELEDEHRS--SKKKYENLV----RKLRE 75
           Y +  +L        F  A             +++D  +S  SK++ ++++         
Sbjct: 16  YQYKDILSV------FEDAFVDNF-----DCKDVQDMPKSILSKEEIDHIIMSKDAVSGT 64

Query: 76  ERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYE 135
            R  W +    K E +V +  +E+      R    FL S    E  +     + +++  +
Sbjct: 65  LRLFWTLLS--KQEEMVQKFVEEVL-----RINYKFLMSPIKTEQRQPSMMTRMYIEQRD 117

Query: 136 EEKRARQLLEESKTMRIREEVEEERNMLQLAEIWREERVQ---M----KLVDAKLALEHK 188
                 Q+  +    R+ +   + R  L   E+   + V    +    K   A       
Sbjct: 118 RLYNDNQVFAKYNVSRL-QPYLKLRQALL--ELRPAKNVLIDGVLGSGKTWVALDVCL-- 172

Query: 189 YSQINKLVEELENFLMSNAATLDVMALRKAELIIRAVKLLNIQDSDEFEYVAPASDSIFS 248
               +  V+   +F       L++      E ++  ++ L  Q    +   +  S +I  
Sbjct: 173 ----SYKVQCKMDF---KIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKL 225

Query: 249 IFEELRQGVDAREMEVEPLTNYSPIYDASNHHIVSPEVNDFDNNHVLKHLNGFIDCNNGL 308
               ++  +  R ++ +P  N   +            V +       K  N F       
Sbjct: 226 RIHSIQAELR-RLLKSKPYENCLLVLL---------NVQN------AKAWNAF------- 262

Query: 309 KKDSRSWECARHSEDQGSRCSVGGRDPSINSGGQGKVASKSTIMHHGNGGQHSPNTDASD 368
                         +   +  +  R   +         +  ++ HH          D   
Sbjct: 263 --------------NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTP----DEVK 304

Query: 369 E-------CSVSGEQPRQKACSVSKLKL 389
                   C    + PR+   + +  +L
Sbjct: 305 SLLLKYLDCRPQ-DLPRE-VLTTNPRRL 330

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 6e-04
 Identities = 27/201 (13%), Positives = 72/201 (35%), Gaps = 51/201 (25%)

Query: 29  EDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLV---RKLREERNSWYVRKH 85
              V      S ++ +  ++ + I  +   +   K K EN     R + +  N   + K 
Sbjct: 405 MVVVNKLHKYSLVEKQPKESTISIPSI---YLELKVKLENEYALHRSIVDHYN---IPKT 458

Query: 86  YKMEAIVDELKDE---------LSKERKSRKQIDF----LNSKFVNELAKAESSAK---- 128
           +  + ++    D+         L       +   F    L+ +F+ +  + +S+A     
Sbjct: 459 FDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518

Query: 129 ------QFMQYYEE-----EKRARQLLEESKT--MRIREEV--EEERNMLQLAEIWREER 173
                 Q +++Y+      + +  +L+        +I E +   +  ++L++A +  +E 
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEA 578

Query: 174 VQMKLVDAKLALEHKYSQINK 194
           +           E  + Q+ +
Sbjct: 579 I----------FEEAHKQVQR 589

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 48.6 bits (116), Expect = 4e-06
 Identities = 26/194 (13%), Positives = 65/194 (33%), Gaps = 9/194 (4%)

Query: 42   QAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSK 101
            +    +    I  L+  +R    K E    K+       Y + H  +E  + +L+ ++ +
Sbjct: 880  RVHYHRTLKAIVYLQCCYRRMMAKRELKKLKIEARSVERYKKLHIGLENKIMQLQRKIDE 939

Query: 102  ERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEESKTMRIREEVEEERN 161
            + K  K +    +      +      +       + +R R   EE+K    R    +E  
Sbjct: 940  QNKEYKSLLEKMNNLEITYSTETEKLR------SDVERLRMSEEEAKNATNRVLSLQEEI 993

Query: 162  MLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNAATLDVMALRKAELI 221
                 E+ + +  +  + +     +    +  +LV EL+          + +  R  +  
Sbjct: 994  AKLRKELHQTQTEKKTIEEWADKYK---HETEQLVSELKEQNTLLKTEKEELNRRIHDQA 1050

Query: 222  IRAVKLLNIQDSDE 235
                + +  +  +E
Sbjct: 1051 KEITETMEKKLVEE 1064

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus} Length = 1080

 Score = 43.6 bits (103), Expect = 1e-04
 Identities = 26/160 (16%), Positives = 63/160 (39%), Gaps = 6/160 (3%)

Query: 28   LEDQVTTFSF-VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHY 86
            LE+++      +     E      +++ LE  + +  +K  + V +LR         +  
Sbjct: 926  LENKIMQLQRKIDEQNKEYKSLLEKMNNLEITYSTETEKLRSDVERLRMSEE-----EAK 980

Query: 87   KMEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEE 146
                 V  L++E++K RK   Q             K +   +Q +   +E+    +  +E
Sbjct: 981  NATNRVLSLQEEIAKLRKELHQTQTEKKTIEEWADKYKHETEQLVSELKEQNTLLKTEKE 1040

Query: 147  SKTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALE 186
                RI ++ +E    ++   +   +++++ L D +L  +
Sbjct: 1041 ELNRRIHDQAKEITETMEKKLVEETKQLELDLNDERLRYQ 1080

>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1 Length = 1010

 Score = 42.0 bits (99), Expect = 4e-04
 Identities = 26/201 (12%), Positives = 64/201 (31%), Gaps = 17/201 (8%)

Query: 43  AELVQARLRIHEL--EDEHRSSKKKYENLVRKLREERNSWYVRKHY-------------K 87
                   R +EL      + +  +  +    +   ++     K Y             +
Sbjct: 766 QTKSDYLKRANELVQWINDKQASLESRDFGDSIESVQSFMNAHKEYKKTEKPPKGQEVSE 825

Query: 88  MEAIVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAKQFMQYYEEEKRARQLLEES 147
           +EAI + L+ +       R+          NE+    S+ ++  Q + E  R     ++ 
Sbjct: 826 LEAIYNSLQTK--LRLIKREPFVAPAGLTPNEIDSTWSALEKAEQEHAEALRIELKRQKK 883

Query: 148 KTMRIREEVEEERNMLQLAEIWREERVQMKLVDAKLALEHKYSQINKLVEELENFLMSNA 207
             + +++     + +   A          +  D+  A++ K   +     E ++    + 
Sbjct: 884 IAVLLQKYNRILKKLENWATTKSVYLGSNETGDSITAVQAKLKNLEAFDGECQSLEGQSN 943

Query: 208 ATLDVMALRKAELIIRAVKLL 228
           + L  +  +  EL    V  L
Sbjct: 944 SDLLSILAQLTELNYNGVPEL 964

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	473
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	96.6
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	95.04
2e7s_A	135	RAB guanine nucleotide exchange factor SEC2; coile	92.49
3u59_A	101	Tropomyosin beta chain; muscle contraction, actin,	91.05
2eqb_B	97	RAB guanine nucleotide exchange factor SEC2; coile	90.32
3u1c_A	101	Tropomyosin alpha-1 chain; anti-parallel coiled co	89.87
2hg7_A	110	Phage-like element PBSX protein XKDW; dimer, GFT s	89.33
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	88.89
2dfs_A	1080	Myosin-5A; myosin-V, inhibited state, cryoelectron	84.67
2w6b_A	56	RHO guanine nucleotide exchange factor 7; X-RAY cr	82.6
2ocy_A	154	RAB guanine nucleotide exchange factor SEC2; RAB,	81.27

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=96.60  E-value=0.037  Score=50.69  Aligned_cols=89  Identities=16%  Similarity=0.230  Sum_probs=68.9

Q ss_pred             hHHHHHhhhccc-ccccccchhhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHH
Q 045851           15 AREAYCLYNHVK-LLEDQVTTFSFVSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVD   93 (473)
Q Consensus        15 s~ellkvlnriw-leEq~~s~~Slv~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~   93 (473)
                      |+.|...+|+.= |+|.       +..++.+|..++.+|+.|+..+.    +++.|...    +        .-+.+-+.
T Consensus         5 StKLI~Ain~qs~LeD~-------L~~~R~el~~~~~ri~~lE~~r~----~~~~l~~~----~--------~~~~~e~~   61 (154)
T 2ocy_A            5 STQLIESVDKQSHLEEQ-------LNKSLKTIASQKAAIENYNQLKE----DYNTLKRE----L--------SDRDDEVK   61 (154)
T ss_dssp             HHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHTTHHHHH----HHHHHHTH----H--------HHHHHHHH
T ss_pred             HHHHHHHHHhhccHHHH-------HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHH----H--------hhhhHHHH
Confidence            457888888865 6665       78889999999999999987664    33333222    1        23666777


Q ss_pred             HHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHH
Q 045851           94 ELKDELSKERKSRKQIDFLNSKFVNELAKAESS  126 (473)
Q Consensus        94 slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss  126 (473)
                      .|.++|..|+..|..+|.-..++-.||.+.-.|
T Consensus        62 ~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTas   94 (154)
T 2ocy_A           62 RLREDIAKENELRTKAEEEADKLNKEVEDLTAS   94 (154)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            899999999999999999999999999997654

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=95.04  E-value=0.22  Score=42.66  Aligned_cols=79  Identities=15%  Similarity=0.248  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHHHHH
Q 045851           41 LQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFVNEL  120 (473)
Q Consensus        41 Lk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~~EL  120 (473)
                      |..+|..+|.+|++|+.+......++..                          |..+|..||..|..+|.-..++-.||
T Consensus         3 ~~~~~e~lre~l~~le~~~~~~~~e~~~--------------------------L~~~l~eE~~~R~~aE~~~~~ie~El   56 (97)
T 2eqb_B            3 LGSNYNQLKEDYNTLKRELSDRDDEVKR--------------------------LREDIAKENELRTKAEEEADKLNKEV   56 (97)
T ss_dssp             --CCHHHHHHHHHHHHHHHHHHHHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHHHHHHHHHHHHHHhhhHHHHH--------------------------HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567888899998888766654444433                          45566666666666666666666666


Q ss_pred             HHHHHH-HHHHHHHHHHHHHHHHHHH
Q 045851          121 AKAESS-AKQFMQYYEEEKRARQLLE  145 (473)
Q Consensus       121 aE~Kss-~~~~lkelE~ErkaRellE  145 (473)
                      .+.-.| |..|=+=.-.+|+.|..+|
T Consensus        57 EeLTasLFeEAN~MVa~ar~e~~~~e   82 (97)
T 2eqb_B           57 EDLTASLFDEANNMVADARKEKYAIE   82 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            665443 3333333334444444443

>2e7s_A RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 3.00A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=92.49  E-value=0.87  Score=40.99  Aligned_cols=73  Identities=18%  Similarity=0.301  Sum_probs=54.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhhhhhHHhHHHH
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRKQIDFLNSKFV  117 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rkr~E~ln~KL~  117 (473)
                      +..++.+|...+++|++|+..+.    +++.|.+.+            ..+..-+..+..+|..||..|..+|.-..++-
T Consensus        10 L~~~r~~l~~~~~~~~~le~l~~----~l~~l~~~l------------~~~~~e~~~L~~~l~eE~~~R~~aE~~~~~ie   73 (135)
T 2e7s_A           10 LNKSLKTIASQKAAIENYNQLKE----DYNTLKREL------------SDRDDEVKRLREDIAKENELRTKAEEEADKLN   73 (135)
T ss_dssp             TTHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHT------------TTHHHHHHTHHHHHHHTTSHHHHHHHTTHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHH----HHHHHHHHH------------hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556788888888888877655    344444333            23445566789999999999999999999999


Q ss_pred             HHHHHHHHH
Q 045851          118 NELAKAESS  126 (473)
Q Consensus       118 ~ELaE~Kss  126 (473)
                      .||.+.-.+
T Consensus        74 ~ElE~LTas   82 (135)
T 2e7s_A           74 KEVEDLTAS   82 (135)
T ss_dssp             HHHHHHHHH
T ss_pred             HHHHHHHHH
Confidence            999997554

>3u59_A Tropomyosin beta chain; muscle contraction, actin, contractIle protein; 2.50A {Gallus gallus}

Probab=91.05  E-value=2.7  Score=35.11  Aligned_cols=74  Identities=19%  Similarity=0.277  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchh-------hHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSKK-------KYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRK---  107 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~-------eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk---  107 (473)
                      +.+|+.|.+.|..++.++++..+....       +|..|-|++.-     =--+.|++...+......|+...+.+.   
T Consensus        11 m~~lk~e~e~a~d~ae~~e~~~k~~e~~~~~~E~ei~sL~kKiq~-----lE~eld~~~e~l~~a~~kLe~~ek~~~~AE   85 (101)
T 3u59_A           11 MQMLKLDKENAIDRAEQAEADKKQAEDRCKQLEEEQQGLQKKLKG-----TEDEVEKYSESVKEAQEKLEQAEKKATDAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            578999999998888888776554433       34444443320     011456777788888888888888888   


Q ss_pred             -hhhHHhHHH
Q 045851          108 -QIDFLNSKF  116 (473)
Q Consensus       108 -r~E~ln~KL  116 (473)
                       .+.+||||+
T Consensus        86 ~evasLnRri   95 (101)
T 3u59_A           86 AEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             555677765

>2eqb_B RAB guanine nucleotide exchange factor SEC2; coiled coil, endocytosis/exocytosis complex; 2.70A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=90.32  E-value=2.9  Score=35.73  Aligned_cols=79  Identities=16%  Similarity=0.326  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHH--HHHHHHHHHHHH--------HHHHHHhhh
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHY--KMEAIVDELKDE--------LSKERKSRK  107 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~e--ki~a~i~slk~E--------Le~ERk~Rk  107 (473)
                      ...|+.+|.++..+......|......+       |.+|+..+..-|..  +|..-|.+|-.-        ...+|+.|-
T Consensus         7 ~e~lre~l~~le~~~~~~~~e~~~L~~~-------l~eE~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~e~~   79 (97)
T 2eqb_B            7 YNQLKEDYNTLKRELSDRDDEVKRLRED-------IAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKY   79 (97)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhhhHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788888888888887777777665       34444443332222  222223222222        245688888


Q ss_pred             hhhHHhHHHHHHHHHH
Q 045851          108 QIDFLNSKFVNELAKA  123 (473)
Q Consensus       108 r~E~ln~KL~~ELaE~  123 (473)
                      .+|.-|.+|...|.|.
T Consensus        80 ~~e~kn~~L~~qL~d~   95 (97)
T 2eqb_B           80 AIEILNKRLTEQLREK   95 (97)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhhc
Confidence            8888888888888764

>3u1c_A Tropomyosin alpha-1 chain; anti-parallel coiled coil, contractIle protein; 1.80A {Gallus gallus} PDB: 3u1a_A

Probab=89.87  E-value=4.6  Score=33.94  Aligned_cols=74  Identities=15%  Similarity=0.194  Sum_probs=49.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHhhhch-------hhHHHHHHHHHHhHhhhhhhhHHHHHHHHHHHHHHHHHHHHhhh---
Q 045851           38 VSALQAELVQARLRIHELEDEHRSSK-------KKYENLVRKLREERNSWYVRKHYKMEAIVDELKDELSKERKSRK---  107 (473)
Q Consensus        38 v~aLk~EL~~Ar~rI~eL~~E~~s~~-------~eie~L~KqlaEEK~~wKskE~eki~a~i~slk~ELe~ERk~Rk---  107 (473)
                      +.+|+.|.+.|..++.+++...+...       .+|..|-+++.-     =--+-|++...+...+..|+...+.+-   
T Consensus        11 m~~lk~e~e~a~drae~~e~~~k~~e~~~~~~E~Ei~sL~kk~~~-----lE~eld~~ee~L~ea~~kLee~ek~~~~aE   85 (101)
T 3u1c_A           11 MQMLKLDKENALDRAEQAEADKKAAEERSKQLEDDIVQLEKQLRV-----TEDSRDQVLEELHKSEDSLLFAEENAAKAE   85 (101)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56889999988888888776544432       344444443320     011457788888888888888888888   


Q ss_pred             -hhhHHhHHH
Q 045851          108 -QIDFLNSKF  116 (473)
Q Consensus       108 -r~E~ln~KL  116 (473)
                       .+.+||||+
T Consensus        86 ~ev~~L~Rri   95 (101)
T 3u1c_A           86 SEVASLNRRI   95 (101)
T ss_dssp             HHHHHHHHHH
T ss_pred             HHHHHHHHHH
Confidence             666677775

>2hg7_A Phage-like element PBSX protein XKDW; dimer, GFT structural genomics, PSI, protein structure initiative; NMR {Bacillus subtilis} SCOP: d.186.2.1

Probab=89.33  E-value=0.07  Score=46.03  Aligned_cols=38  Identities=39%  Similarity=0.454  Sum_probs=0.0

Q ss_pred             HHHHHHHHHHHHHHhhhhhhHHhHHHHHHHHHHHHHHH
Q 045851           91 IVDELKDELSKERKSRKQIDFLNSKFVNELAKAESSAK  128 (473)
Q Consensus        91 ~i~slk~ELe~ERk~Rkr~E~ln~KL~~ELaE~Kss~~  128 (473)
                      .|+.+..||..|+-+||++|-+|.-|++||+.+|..+-
T Consensus        64 q~~~laqels~eklarkqleeln~~Lg~Els~iKl~lL  101 (110)
T 2hg7_A           64 QVELLAQELSQEKLARKQLEELNKTLGNELSDIKLSLL  101 (110)
T ss_dssp             --------------------------------------
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46778889999999999999999999999999998764

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=88.89  E-value=5.8  Score=40.68  Aligned_cols=22  Identities=5%  Similarity=0.063  Sum_probs=9.3

Q ss_pred             HHHHHHHHHHHHHHhhhcCCcc
Q 045851          190 SQINKLVEELENFLMSNAATLD  211 (473)
Q Consensus       190 s~ldkL~~elE~FL~sk~~~~d  211 (473)
                      ..+..+..+|...+..-+.+.|
T Consensus       565 ~e~~~~~~~~~~l~~~~~~~~~  586 (597)
T 3oja_B          565 QETSLKRQKVKQLEAKKNRNPD  586 (597)
T ss_dssp             HHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHhcCCCc
Confidence            3455555555555554333333

>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}

Probab=84.67  E-value=11  Score=43.11  Aligned_cols=7  Identities=14%  Similarity=0.041  Sum_probs=2.8

Q ss_pred             HHHhhhh
Q 045851          162 MLQLAEI  168 (473)
Q Consensus       162 MLqmAEv  168 (473)
                      ++..++-
T Consensus      1046 ~~~~~~~ 1052 (1080)
T 2dfs_A         1046 IHDQAKE 1052 (1080)
T ss_dssp             HHHHHHH
T ss_pred             HHHHHHH
Confidence            4444433

>2w6b_A RHO guanine nucleotide exchange factor 7; X-RAY crystallography, phosphoprotein, guanine-nucleotide releasing factor, GIT, PAK, PIX, COOL; 2.80A {Rattus norvegicus}

Probab=82.60  E-value=4.6  Score=31.51  Aligned_cols=20  Identities=30%  Similarity=0.537  Sum_probs=17.2

Q ss_pred             HHHHHHHhhhhhhHHhHHHH
Q 045851           98 ELSKERKSRKQIDFLNSKFV  117 (473)
Q Consensus        98 ELe~ERk~Rkr~E~ln~KL~  117 (473)
                      =||.|.|+|+++|.+=+|+.
T Consensus        32 ~lEeEqkARk~LE~~vrk~~   51 (56)
T 2w6b_A           32 SLEEEQRARKDLEKLVRKVL   51 (56)
T ss_dssp             HHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHH
Confidence            48889999999999988884

>2ocy_A RAB guanine nucleotide exchange factor SEC2; RAB, GEF, guanine exchange factor, coiled-coil, endocytosis/exocytosis complex; 3.30A {Saccharomyces cerevisiae} SCOP: h.1.33.1

Probab=81.27  E-value=25  Score=32.18  Aligned_cols=86  Identities=17%  Similarity=0.276  Sum_probs=64.4

Q ss_pred             HHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHhHhhhhhhhHH--HHHHHHHHHHHHH--------HHHHHhhhhhhHH
Q 045851           43 AELVQARLRIHELEDEHRSSKKKYENLVRKLREERNSWYVRKHY--KMEAIVDELKDEL--------SKERKSRKQIDFL  112 (473)
Q Consensus        43 ~EL~~Ar~rI~eL~~E~~s~~~eie~L~KqlaEEK~~wKskE~e--ki~a~i~slk~EL--------e~ERk~Rkr~E~l  112 (473)
                      ..|+.++.++.+|..+......++..|+..+++|+..+..-|+.  +|..-|.+|-.-|        ..+|+.|-.+|.-
T Consensus        37 ~~lE~~r~~~~~l~~~~~~~~~e~~~L~~~l~~E~~~R~~aE~~~~~ie~ElEeLTasLFeEAN~MVa~ar~~~~~~e~r  116 (154)
T 2ocy_A           37 ENYNQLKEDYNTLKRELSDRDDEVKRLREDIAKENELRTKAEEEADKLNKEVEDLTASLFDEANNMVADARKEKYAIEIL  116 (154)
T ss_dssp             HTTHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45566778888888888888889999999999999988765443  3444444443333        3579999999999


Q ss_pred             hHHHHHHHHHHHHHHH
Q 045851          113 NSKFVNELAKAESSAK  128 (473)
Q Consensus       113 n~KL~~ELaE~Kss~~  128 (473)
                      |.+|...|.+...-+.
T Consensus       117 ~~~L~~ql~e~~~~l~  132 (154)
T 2ocy_A          117 NKRLTEQLREKDTLLD  132 (154)
T ss_dssp             HHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHH
Confidence            9999999998766444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00