Citrus Sinensis ID: 045861
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | 2.2.26 [Sep-21-2011] | |||||||
| C0LGT6 | 1031 | LRR receptor-like serine/ | yes | no | 0.952 | 0.469 | 0.344 | 2e-70 | |
| C0LGP4 | 1010 | Probable LRR receptor-lik | no | no | 0.915 | 0.460 | 0.358 | 1e-69 | |
| C0LGQ5 | 1249 | LRR receptor-like serine/ | no | no | 0.907 | 0.369 | 0.353 | 2e-69 | |
| Q9FIZ3 | 1252 | LRR receptor-like serine/ | no | no | 0.958 | 0.388 | 0.340 | 5e-67 | |
| Q6XAT2 | 967 | LRR receptor-like serine/ | no | no | 0.858 | 0.450 | 0.346 | 3e-64 | |
| Q9FL28 | 1173 | LRR receptor-like serine/ | no | no | 0.958 | 0.415 | 0.333 | 7e-62 | |
| Q9LHP4 | 1141 | Receptor-like protein kin | no | no | 0.866 | 0.385 | 0.376 | 2e-61 | |
| Q42371 | 976 | LRR receptor-like serine/ | no | no | 0.911 | 0.474 | 0.350 | 2e-61 | |
| Q9ZUI0 | 980 | Putative leucine-rich rep | no | no | 0.919 | 0.476 | 0.357 | 3e-61 | |
| C0LGW6 | 966 | LRR receptor-like serine/ | no | no | 0.858 | 0.451 | 0.340 | 7e-61 |
| >sp|C0LGT6|EFR_ARATH LRR receptor-like serine/threonine-protein kinase EFR OS=Arabidopsis thaliana GN=EFR PE=1 SV=1 | Back alignment and function desciption |
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Score = 266 bits (681), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 181/526 (34%), Positives = 273/526 (51%), Gaps = 42/526 (7%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
++ + N L G +P + + RL +D+++NH+ VP L +L + LS N LTG
Sbjct: 126 LNMSYNLLEGRIPSSL-SNCSRLSTVDLSSNHLGHGVPSELGSLSKLAILDLSKNNLTGN 184
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLE 114
P +GNLTS + L N + GEIP E+ L + + + N+F G S+LE
Sbjct: 185 FPASLGNLTSLQKLDFAYNQMRGEIPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLE 244
Query: 115 RLYLERNNFSGTI-PSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
L L N+FSG + F + L L + TN F+G IP T+AN+ +L+ D+S NYL+
Sbjct: 245 SLSLADNSFSGNLRADFGYLLPNLRRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSG 304
Query: 174 S-------------------------TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSM 208
S +S L F+ ++ NC L+ +D+ N+L G LP+S+
Sbjct: 305 SIPLSFGKLRNLWWLGIRNNSLGNNSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASI 364
Query: 209 GNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYL 268
NLST+L +++ SG IP +IGNL++L +SL N L+G +P+S GKL LQ + L
Sbjct: 365 ANLSTTLTSLFLGQNLISGTIPHDIGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDL 424
Query: 269 YKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPST 328
Y N + G IP N+ RL +L N G IP +G+ L +L + +N L IP
Sbjct: 425 YSNAISGEIPSYFGNMTRLQKLHLNSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQE 484
Query: 329 FLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388
L + + + S+N L G P ++G L+++VG+ S N LS +P IGG ++ F +
Sbjct: 485 ILQIPSLAYIDLSNNFLTGHFPEEVGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFM 544
Query: 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
N G+IP+ + L SL+ +D SNN+ SG IPR L L LNLS N+ +G +P+
Sbjct: 545 QGNSFDGAIPD-ISRLVSLKNVDFSNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTT 603
Query: 449 ESFANFSDNSFMGNSFLCGSPN--------LQVPPRKDIKTSPHRK 486
F N + S GN+ +CG +Q PRK S +K
Sbjct: 604 GVFRNATAVSVFGNTNICGGVREMQLKPCIVQASPRKRKPLSVRKK 649
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of elongation factor Tu (EF-Tu), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Reduces transformation by Rhizobium radiobacter probably by inducing plant defense during the interaction. Binding to the effector AvrPto1 from P.syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1 |
| >sp|C0LGP4|Y3475_ARATH Probable LRR receptor-like serine/threonine-protein kinase At3g47570 OS=Arabidopsis thaliana GN=At3g47570 PE=1 SV=1 | Back alignment and function description |
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Score = 264 bits (675), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 187/522 (35%), Positives = 270/522 (51%), Gaps = 57/522 (10%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D N G++P ++ Q L RL+ LD+ N++ GP+P L+ C L+ + L N+L G
Sbjct: 95 LDLYENFFGGTIPQEVGQ-LSRLEYLDMGINYLRGPIPLGLYNCSRLLNLRLDSNRLGGS 153
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLER----- 115
+P ++G+LT+ L L NN+ G++P +GNL LE L L +NN +G S++ +
Sbjct: 154 VPSELGSLTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSDVAQLTQIW 213
Query: 116 -LYLERNNFSGTIPSFIFNASKLSILGIRTNSFS-------------------------G 149
L L NNFSG P ++N S L +LGI N FS G
Sbjct: 214 SLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFNMGGNYFTG 273
Query: 150 TIPSTIANLRNLQWLDLSFNYLTS------------------------STSELSFLSSLR 185
+IP+T++N+ L+ L ++ N LT S+ +L FL+SL
Sbjct: 274 SIPTTLSNISTLERLGMNENNLTGSIPTFGNVPNLKLLFLHTNSLGSDSSRDLEFLTSLT 333
Query: 186 NCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245
NC L+ + + N+L G LP S+ NLS L + + SG IP +IGNLINL + L
Sbjct: 334 NCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNLINLQKLILD 393
Query: 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI 305
N L+G +P SLGKL L+ L L+ N+L G IP + N+ L L +N G +P +
Sbjct: 394 QNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNGFEGIVPTSL 453
Query: 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365
G S L L + N L IP + ++ +L + S NSL GSLP DIG L+ + + L
Sbjct: 454 GNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGALQNLGTLSLG 513
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
N LS +P +G + L N G IP+ L L ++ +DLSNN SG IP F
Sbjct: 514 DNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPD-LKGLVGVKEVDLSNNDLSGSIPEYF 572
Query: 426 EKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCG 467
LEYLNLSFN L+G++P F N + S +GN+ LCG
Sbjct: 573 ASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCG 614
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Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1 | Back alignment and function description |
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Score = 263 bits (673), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 192/543 (35%), Positives = 266/543 (48%), Gaps = 82/543 (15%)
Query: 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
ANN L+GSLP +C + L+ L ++ ++G +P L +CQ L + LS+N L G IP
Sbjct: 318 LANNHLSGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIP 377
Query: 63 RDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRH----SNLERL 116
+ L L L NN L G + I NL NL++LVL +NN +G P+ LE L
Sbjct: 378 EALFELVELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVL 437
Query: 117 YLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS 176
+L N FSG IP I N + L ++ + N F G IP +I L+ L L L N L
Sbjct: 438 FLYENRFSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGG-- 495
Query: 177 ELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM---------------- 220
+SL NC L ++DL NQL G +PSS G L LE + +
Sbjct: 496 ---LPASLGNCHQLNILDLADNQLSGSIPSSFGFLK-GLEQLMLYNNSLQGNLPDSLISL 551
Query: 221 ------------------PYCRRSG-------------RIPEEIGNLINLITMSLGINKL 249
P C S IP E+GN NL + LG N+L
Sbjct: 552 RNLTRINLSHNRLNGTIHPLCGSSSYLSFDVTNNGFEDEIPLELGNSQNLDRLRLGKNQL 611
Query: 250 TGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLS 309
TG IP +LGK+++L L + N L G+IP L +L + +N L G IP +GKLS
Sbjct: 612 TGKIPWTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLS 671
Query: 310 PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369
L L L SN +P+ + +LV + NSLNGS+P +IGNL + ++L +N
Sbjct: 672 QLGELKLSSNQFVESLPTELFNCTKLLVLSLDGNSLNGSIPQEIGNLGALNVLNLDKNQF 731
Query: 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE-FLDLSNNSFSGFIPRSFEKL 428
S S+P +G LS L L+ N L G IP +G L+ L+ LDLS N+F+G IP + L
Sbjct: 732 SGSLPQAMGKLSKLYELRLSRNSLTGEIPVEIGQLQDLQSALDLSYNNFTGDIPSTIGTL 791
Query: 429 LYLEYLNLSFNRLKGEIPSG----------------------ESFANFSDNSFMGNSFLC 466
LE L+LS N+L GE+P + F+ + +SF+GN+ LC
Sbjct: 792 SKLETLDLSHNQLTGEVPGSVGDMKSLGYLNVSFNNLGGKLKKQFSRWPADSFLGNTGLC 851
Query: 467 GSP 469
GSP
Sbjct: 852 GSP 854
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Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FIZ3|GSO2_ARATH LRR receptor-like serine/threonine-protein kinase GSO2 OS=Arabidopsis thaliana GN=GSO2 PE=2 SV=2 | Back alignment and function description |
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Score = 255 bits (652), Expect = 5e-67, Method: Compositional matrix adjust.
Identities = 198/581 (34%), Positives = 277/581 (47%), Gaps = 94/581 (16%)
Query: 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
A N L+GSLP +C + L+ L ++ ++G +P + CQ L + LS+N LTG IP
Sbjct: 319 LAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNTLTGQIP 378
Query: 63 RDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRH----SNLERL 116
+ L L L NN+L G + I NL NL+ L +NN +G P+ LE +
Sbjct: 379 DSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFLGKLEIM 438
Query: 117 YLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS 176
YL N FSG +P I N ++L + N SG IPS+I L++L L L N L +
Sbjct: 439 YLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENELVGNIP 498
Query: 177 ELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM---------------- 220
+SL NC + VIDL NQL G +PSS G L T+LE +
Sbjct: 499 -----ASLGNCHQMTVIDLADNQLSGSIPSSFGFL-TALELFMIYNNSLQGNLPDSLINL 552
Query: 221 ------------------PYCRRS-------------GRIPEEIGNLINLITMSLGINKL 249
P C S G IP E+G NL + LG N+
Sbjct: 553 KNLTRINFSSNKFNGSISPLCGSSSYLSFDVTENGFEGDIPLELGKSTNLDRLRLGKNQF 612
Query: 250 TGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLS 309
TG IP + GK+ +L L + +N L G IP L +L + +N L G IP +GKL
Sbjct: 613 TGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGVIPTWLGKLP 672
Query: 310 PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369
L L L SN +P+ SL +IL NSLNGS+P +IGNL+ + ++L N L
Sbjct: 673 LLGELKLSSNKFVGSLPTEIFSLTNILTLFLDGNSLNGSIPQEIGNLQALNALNLEENQL 732
Query: 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE-FLDLSNNSFSGFIPRSFEKL 428
S +P+ IG LS L L+ N L G IP +G L+ L+ LDLS N+F+G IP + L
Sbjct: 733 SGPLPSTIGKLSKLFELRLSRNALTGEIPVEIGQLQDLQSALDLSYNNFTGRIPSTISTL 792
Query: 429 LYLEYLNLSFNRLKGEIPS----------------------GESFANFSDNSFMGNSFLC 466
LE L+LS N+L GE+P + F+ + ++F+GN+ LC
Sbjct: 793 PKLESLDLSHNQLVGEVPGQIGDMKSLGYLNLSYNNLEGKLKKQFSRWQADAFVGNAGLC 852
Query: 467 GSPNLQVPPRKDIKTSPHRKSRKNTRSSARLPSSCEILPAL 507
GSP + +R KN RS + P + I+ A+
Sbjct: 853 GSP----------LSHCNRAGSKNQRSLS--PKTVVIISAI 881
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Together with GSO1, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons. Involved in the nuclear division phase of megagametogenesis. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q6XAT2|ERL2_ARATH LRR receptor-like serine/threonine-protein kinase ERL2 OS=Arabidopsis thaliana GN=ERL2 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 246 bits (628), Expect = 3e-64, Method: Compositional matrix adjust.
Identities = 172/497 (34%), Positives = 249/497 (50%), Gaps = 61/497 (12%)
Query: 25 ALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGE 84
+L+++N ++ G + L L +I L N+L G IP +IGN S + N L G+
Sbjct: 77 SLNLSNLNLGGEISSALGDLMNLQSIDLQGNKLGGQIPDEIGNCVSLAYVDFSTNLLFGD 136
Query: 85 IPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLS 138
IP I L LE+L L+NN GP + NL+ L L RN +G IP ++ L
Sbjct: 137 IPFSISKLKQLEFLNLKNNQLTGPIPATLTQIPNLKTLDLARNQLTGEIPRLLYWNEVLQ 196
Query: 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
LG+R N +GT+ + L L + D+ N LT + E S+ NC + +++D++ N
Sbjct: 197 YLGLRGNMLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPE-----SIGNCTSFEILDVSYN 251
Query: 199 QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLG 258
Q+ G++P ++G L + + + + +GRIPE IG + L + L N+LTG IP LG
Sbjct: 252 QITGVIPYNIGFLQVAT--LSLQGNKLTGRIPEVIGLMQALAVLDLSDNELTGPIPPILG 309
Query: 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL-- 316
L LYL+ NKL G IP L N+ RL LQ DN+L G IP +GKL L L L
Sbjct: 310 NLSFTGKLYLHGNKLTGQIPPELGNMSRLSYLQLNDNELVGKIPPELGKLEQLFELNLAN 369
Query: 317 ----------------------HSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
H N L+ +P F +L + N SSNS G +P ++G
Sbjct: 370 NNLVGLIPSNISSCAALNQFNVHGNFLSGAVPLEFRNLGSLTYLNLSSNSFKGKIPAELG 429
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
++ + +DLS NN S SIP +G L +L +L+ N L G++P G+LRS++ +D+S
Sbjct: 430 HIINLDTLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLNGTLPAEFGNLRSIQIIDVSF 489
Query: 415 NSFSGFIPRSFEKL------------------------LYLEYLNLSFNRLKGEIPSGES 450
N +G IP +L L LN+SFN L G IP ++
Sbjct: 490 NFLAGVIPTELGQLQNINSLILNNNKIHGKIPDQLTNCFSLANLNISFNNLSGIIPPMKN 549
Query: 451 FANFSDNSFMGNSFLCG 467
F FS SF GN FLCG
Sbjct: 550 FTRFSPASFFGNPFLCG 566
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Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ERL1 and ER. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 238 bits (608), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 196/588 (33%), Positives = 273/588 (46%), Gaps = 101/588 (17%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D + N LTG +P D +L LQ+L + N + G +P + C L+ + L NQLTG
Sbjct: 221 LDLSGNQLTGKIPRDF-GNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGK 279
Query: 61 IPRDIGNLTSARALL------------------------LGNNNLIGEIPHEIGNLHNLE 96
IP ++GNL +AL L N+L+G I EIG L +LE
Sbjct: 280 IPAELGNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLE 339
Query: 97 YLVLENNNFDG--PRH----SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGT 150
L L +NNF G P+ NL L + NN SG +P+ + + L L N +G
Sbjct: 340 VLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGP 399
Query: 151 IPSTIANLRNLQWLDLSFNYLTSSTSE------LSFLSSLRN------------CRNLKV 192
IPS+I+N L+ LDLS N +T L+F+S RN C NL+
Sbjct: 400 IPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDIFNCSNLET 459
Query: 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS 252
+ + N L G L +G L L + + Y +G IP EIGNL +L + L N TG
Sbjct: 460 LSVADNNLTGTLKPLIGKLQ-KLRILQVSYNSLTGPIPREIGNLKDLNILYLHSNGFTGR 518
Query: 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312
IP + L LQGL +Y N LEG IP+ + ++ L L +NK G IPA KL L
Sbjct: 519 IPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLT 578
Query: 313 NLLLH------------------------SNVLTYVIPSTFL-SLRDI-LVFNFSSNSLN 346
L L N+LT IP L SL+++ L NFS+N L
Sbjct: 579 YLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLT 638
Query: 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIP-------------------------TVIGGLS 381
G++P ++G L++V IDLS N S SIP V G+
Sbjct: 639 GTIPKELGKLEMVQEIDLSNNLFSGSIPRSLQACKNVFTLDFSQNNLSGHIPDEVFQGMD 698
Query: 382 NLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
+ +L+ N G IP+S G++ L LDLS+N+ +G IP S L L++L L+ N L
Sbjct: 699 MIISLNLSRNSFSGEIPQSFGNMTHLVSLDLSSNNLTGEIPESLANLSTLKHLKLASNNL 758
Query: 442 KGEIPSGESFANFSDNSFMGNSFLCGSPNLQVPPRKDIKTSPHRKSRK 489
KG +P F N + + MGN+ LCGS P K+S K +
Sbjct: 759 KGHVPESGVFKNINASDLMGNTDLCGSKKPLKPCTIKQKSSHFSKRTR 806
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Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1 | Back alignment and function description |
|---|
Score = 237 bits (604), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 180/478 (37%), Positives = 247/478 (51%), Gaps = 38/478 (7%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N L G +P + + L L+ L +N+N +TG +P ++ +C +L ++ L N LTG
Sbjct: 134 LDLSSNGLVGDIPWSLSK-LRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGS 192
Query: 61 IPRDIGNLTSARALLLGNNNLI-GEIPHEIGNLHNLEYLVLENNNFDG------PRHSNL 113
IP ++G L+ + +G N I G+IP EIG+ NL L L + G + L
Sbjct: 193 IPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKL 252
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
E L + SG IPS + N S+L L + NS SG+IP I L L+ L L N L
Sbjct: 253 ETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVG 312
Query: 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI 233
E + NC NLK+IDL+ N L G +PSS+G LS LE + + SG IP I
Sbjct: 313 GIPE-----EIGNCSNLKMIDLSLNLLSGSIPSSIGRLSF-LEEFMISDNKFSGSIPTTI 366
Query: 234 GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293
N +L+ + L N+++G IP LG L KL + + N+LEGSIP L + L L
Sbjct: 367 SNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLS 426
Query: 294 DNKLFGSIPACIGKLSPLRNLLLHSNVL------------------------TYVIPSTF 329
N L G+IP+ + L L LLL SN L T IPS
Sbjct: 427 RNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI 486
Query: 330 LSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389
SL+ I +FSSN L+G +P +IG+ + IDLS N+L S+P + LS L ++
Sbjct: 487 GSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVS 546
Query: 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
N+ G IP SLG L SL L LS N FSG IP S L+ L+L N L GEIPS
Sbjct: 547 ANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPS 604
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q42371|ERECT_ARATH LRR receptor-like serine/threonine-protein kinase ERECTA OS=Arabidopsis thaliana GN=ERECTA PE=1 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (603), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 175/499 (35%), Positives = 253/499 (50%), Gaps = 36/499 (7%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
L L ++D+ N ++G +P + C L + LS N+L+G IP I L L+L NN
Sbjct: 91 LKSLLSIDLRGNRLSGQIPDEIGDCSSLQNLDLSFNELSGDIPFSISKLKQLEQLILKNN 150
Query: 80 NLIGEIPHEIGNLHNLEYLVLENNNFDG--PR----HSNLERLYLERNNFSGTIPSFIFN 133
LIG IP + + NL+ L L N G PR + L+ L L NN G I +
Sbjct: 151 QLIGPIPSTLSQIPNLKILDLAQNKLSGEIPRLIYWNEVLQYLGLRGNNLVGNISPDLCQ 210
Query: 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS-ELSFL----------- 181
+ L +R NS +G+IP TI N Q LDLS+N LT ++ FL
Sbjct: 211 LTGLWYFDVRNNSLTGSIPETIGNCTAFQVLDLSYNQLTGEIPFDIGFLQVATLSLQGNQ 270
Query: 182 ------SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235
S + + L V+DL+GN L G +P +GNL T E +Y+ + +G IP E+GN
Sbjct: 271 LSGKIPSVIGLMQALAVLDLSGNLLSGSIPPILGNL-TFTEKLYLHSNKLTGSIPPELGN 329
Query: 236 LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295
+ L + L N LTG IP LGKL L L + N LEG IPD L + L L + N
Sbjct: 330 MSKLHYLELNDNHLTGHIPPELGKLTDLFDLNVANNDLEGPIPDHLSSCTNLNSLNVHGN 389
Query: 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGN 355
K G+IP KL + L L SN + IP + ++ + S+N +NG +P +G+
Sbjct: 390 KFSGTIPRAFQKLESMTYLNLSSNNIKGPIPVELSRIGNLDTLDLSNNKINGIIPSSLGD 449
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
L+ ++ ++LSRN+++ +P G L ++ L+ N + G IPE L L+++ L L NN
Sbjct: 450 LEHLLKMNLSRNHITGVVPGDFGNLRSIMEIDLSNNDISGPIPEELNQLQNIILLRLENN 509
Query: 416 SFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSPNLQVPP 475
+ +G + S L L LN+S N L G+IP +F+ FS +SF+GN LCGS
Sbjct: 510 NLTGNV-GSLANCLSLTVLNVSHNNLVGDIPKNNNFSRFSPDSFIGNPGLCGS------- 561
Query: 476 RKDIKTSPHRKSRKNTRSS 494
SP SR+ R S
Sbjct: 562 ---WLNSPCHDSRRTVRVS 577
|
Receptor kinase that, together with ERL1 and ERL2, regulates aerial architecture, including inflorescence (e.g. shoot apical meristem-originating organ shape, elongation of the internode and pedicels, and adaxial-abaxial polarity), and stomatal patterning (e.g. density and clustering), probably by tuning cell division and expansion. Modulates plant transpiration efficiency by controlling stomatal density, leaf photosynthetic capacity, epidermal cell expansion, mesophyll cell proliferation and cell-cell contact. Probable major trait regulating canalization (maintenance of phenotype despite varying environment) in many aspect of the plant physiology (e.g. plant morphology, light-dependent leaves number, branch number, flowering time, phytate and mineral concentrations) by transducing microenvironmental variation into phenotypic differentiation (ecological amplifier). May maintain development integrity in heat stress conditions. Regulates cell wall composition and structure. Confers resistance to the pathogenic bacteria Ralstonia solanacearum and to the necrotrophic fungi Plectosphaerella cucumerina and Pythium irregulare, and required for callose deposition upon infection. Resistance to P.cucumerina seems cell wall-mediated. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|Q9ZUI0|Y2241_ARATH Putative leucine-rich repeat receptor-like serine/threonine-protein kinase At2g24130 OS=Arabidopsis thaliana GN=At2g24130 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 236 bits (602), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 182/509 (35%), Positives = 270/509 (53%), Gaps = 42/509 (8%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQE-LIAISLSHNQLTG 59
+D + L G + + +L L LD++ N G +P + E L +SLS N L G
Sbjct: 71 LDISGRDLGGEISPSIA-NLTGLTVLDLSRNFFVGKIPPEIGSLHETLKQLSLSENLLHG 129
Query: 60 LIPRDIGNLTSARALLLGNNNLIGEIPHEI---GNLHNLEYLVLENNNFDGP----RHSN 112
IP+++G L L LG+N L G IP ++ G+ +L+Y+ L NN+ G H +
Sbjct: 130 NIPQELGLLNRLVYLDLGSNRLNGSIPVQLFCNGSSSSLQYIDLSNNSLTGEIPLNYHCH 189
Query: 113 LERL---YLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPS-TIANLRNLQWLDLSF 168
L+ L L N +GT+PS + N++ L + + +N SG +PS I+ + LQ+L LS+
Sbjct: 190 LKELRFLLLWSNKLTGTVPSSLSNSTNLKWMDLESNMLSGELPSQVISKMPQLQFLYLSY 249
Query: 169 NYLTS---STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225
N+ S +T+ F +SL N +L+ ++L GN L G + SS+ +LS +L I++ R
Sbjct: 250 NHFVSHNNNTNLEPFFASLANSSDLQELELAGNSLGGEITSSVRHLSVNLVQIHLDQNRI 309
Query: 226 SGRIPEEIG------------------------NLINLITMSLGINKLTGSIPISLGKLQ 261
G IP EI L L + L N LTG IP+ LG +
Sbjct: 310 HGSIPPEISNLLNLTLLNLSSNLLSGPIPRELCKLSKLERVYLSNNHLTGEIPMELGDIP 369
Query: 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVL 321
+L L + +N L GSIPDS NL +L L Y N L G++P +GK L L L N L
Sbjct: 370 RLGLLDVSRNNLSGSIPDSFGNLSQLRRLLLYGNHLSGTVPQSLGKCINLEILDLSHNNL 429
Query: 322 TYVIPSTFLS-LRDI-LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGG 379
T IP +S LR++ L N SSN L+G +PL++ + +V+ +DLS N LS IP +G
Sbjct: 430 TGTIPVEVVSNLRNLKLYLNLSSNHLSGPIPLELSKMDMVLSVDLSSNELSGKIPPQLGS 489
Query: 380 LSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L +L+ N ++P SLG L L+ LD+S N +G IP SF++ L++LN SFN
Sbjct: 490 CIALEHLNLSRNGFSSTLPSSLGQLPYLKELDVSFNRLTGAIPPSFQQSSTLKHLNFSFN 549
Query: 440 RLKGEIPSGESFANFSDNSFMGNSFLCGS 468
L G + SF+ + SF+G+S LCGS
Sbjct: 550 LLSGNVSDKGSFSKLTIESFLGDSLLCGS 578
|
Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
| >sp|C0LGW6|ERL1_ARATH LRR receptor-like serine/threonine-protein kinase ERL1 OS=Arabidopsis thaliana GN=ERL1 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 235 bits (599), Expect = 7e-61, Method: Compositional matrix adjust.
Identities = 169/497 (34%), Positives = 251/497 (50%), Gaps = 61/497 (12%)
Query: 25 ALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGE 84
+L++++ ++ G + + + L +I L N+L G IP +IGN S L L N L G+
Sbjct: 75 SLNLSSLNLGGEISPAIGDLRNLQSIDLQGNKLAGQIPDEIGNCASLVYLDLSENLLYGD 134
Query: 85 IPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLS 138
IP I L LE L L+NN GP + NL+RL L N+ +G I ++ L
Sbjct: 135 IPFSISKLKQLETLNLKNNQLTGPVPATLTQIPNLKRLDLAGNHLTGEISRLLYWNEVLQ 194
Query: 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
LG+R N +GT+ S + L L + D+ N LT + E S+ NC + +++D++ N
Sbjct: 195 YLGLRGNMLTGTLSSDMCQLTGLWYFDVRGNNLTGTIPE-----SIGNCTSFQILDISYN 249
Query: 199 QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLG 258
Q+ G +P ++G L + + + R +GRIPE IG + L + L N+L G IP LG
Sbjct: 250 QITGEIPYNIGFLQVA--TLSLQGNRLTGRIPEVIGLMQALAVLDLSDNELVGPIPPILG 307
Query: 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL-- 316
L LYL+ N L G IP L N+ RL LQ DNKL G+IP +GKL L L L
Sbjct: 308 NLSFTGKLYLHGNMLTGPIPSELGNMSRLSYLQLNDNKLVGTIPPELGKLEQLFELNLAN 367
Query: 317 ----------------------HSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
H N+L+ IP F +L + N SSN+ G +P+++G
Sbjct: 368 NRLVGPIPSNISSCAALNQFNVHGNLLSGSIPLAFRNLGSLTYLNLSSNNFKGKIPVELG 427
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
++ + +DLS NN S SIP +G L +L +L+ N L G +P G+LRS++ +D+S
Sbjct: 428 HIINLDKLDLSGNNFSGSIPLTLGDLEHLLILNLSRNHLSGQLPAEFGNLRSIQMIDVSF 487
Query: 415 NSFSGFIPRSFEK------------------------LLYLEYLNLSFNRLKGEIPSGES 450
N SG IP + L LN+SFN L G +P ++
Sbjct: 488 NLLSGVIPTELGQLQNLNSLILNNNKLHGKIPDQLTNCFTLVNLNVSFNNLSGIVPPMKN 547
Query: 451 FANFSDNSFMGNSFLCG 467
F+ F+ SF+GN +LCG
Sbjct: 548 FSRFAPASFVGNPYLCG 564
|
Receptor kinase that regulates inflorescence architecture and organ shape as well as stomatal patterning, including density and clustering, together with ER and ERL2. Arabidopsis thaliana (taxid: 3702) EC: 2 EC: . EC: 7 EC: . EC: 1 EC: 1 EC: . EC: 1 |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| 359483685 | 1046 | PREDICTED: LRR receptor-like serine/thre | 0.927 | 0.450 | 0.493 | 1e-118 | |
| 359483677 | 1229 | PREDICTED: LRR receptor-like serine/thre | 0.931 | 0.384 | 0.476 | 1e-117 | |
| 255572272 | 1089 | serine-threonine protein kinase, plant-t | 0.931 | 0.434 | 0.490 | 1e-116 | |
| 359497186 | 1140 | PREDICTED: LRR receptor-like serine/thre | 0.927 | 0.413 | 0.468 | 1e-114 | |
| 359483683 | 1228 | PREDICTED: LRR receptor-like serine/thre | 0.931 | 0.385 | 0.472 | 1e-112 | |
| 359485453 | 1202 | PREDICTED: probable LRR receptor-like se | 0.956 | 0.404 | 0.471 | 1e-112 | |
| 359483675 | 1250 | PREDICTED: LRR receptor-like serine/thre | 0.931 | 0.378 | 0.474 | 1e-112 | |
| 224116832 | 1061 | predicted protein [Populus trichocarpa] | 0.954 | 0.457 | 0.480 | 1e-112 | |
| 147852480 | 1229 | hypothetical protein VITISV_039533 [Viti | 0.931 | 0.384 | 0.468 | 1e-111 | |
| 147769371 | 1241 | hypothetical protein VITISV_010511 [Viti | 0.931 | 0.381 | 0.466 | 1e-111 |
| >gi|359483685|ref|XP_002263372.2| PREDICTED: LRR receptor-like serine/threonine-protein kinase EFR-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 432 bits (1110), Expect = e-118, Method: Compositional matrix adjust.
Identities = 242/490 (49%), Positives = 321/490 (65%), Gaps = 19/490 (3%)
Query: 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
FANN+L+GSLP D+C+HLP LQ L ++ NH++G +P L C+EL++++L N+ TG IP
Sbjct: 202 FANNSLSGSLPMDICKHLPNLQGLYLSQNHLSGQLPTTLSLCRELLSLALPMNKFTGSIP 261
Query: 63 RDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLV----------LENNNFDGPRHS- 111
R+IGNL+ + L N+LIG IP GNL L++L L N+ G S
Sbjct: 262 REIGNLSKLEEIDLSENSLIGSIPTSFGNLMTLKFLSFNISKLQTLGLVQNHLSGSLPSS 321
Query: 112 ------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165
+LE LY+ N FSGTIP I N SKL++L + NSF+G +P + NL LQ+LD
Sbjct: 322 IGTWLPDLEGLYIGINEFSGTIPMSISNMSKLTVLSLSDNSFTGNVPKDLCNLTKLQFLD 381
Query: 166 LSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYC 223
L++N LT S + FL+SL NC+ L+ + + N L G LP+S+GNL +LE C
Sbjct: 382 LAYNQLTDEHLASGVGFLTSLTNCKFLRNLWIGYNPLTGTLPNSLGNLPIALEIFIASAC 441
Query: 224 RRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCN 283
+ G IP IGNL NLI + LG N LTGSIP +LG+LQKLQ L + N++ GSIP+ LC+
Sbjct: 442 QFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQALSIVGNRIRGSIPNDLCH 501
Query: 284 LGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343
L L L+ NKL GSIP+C G L LR L L SNVL + IP +F SLRD+LV N SSN
Sbjct: 502 LKNLGYLRLSYNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPMSFWSLRDLLVLNLSSN 561
Query: 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD 403
L G+LP ++GN+K + +DLS+N +S IP+ +G L NL SL+ NKLQG IP GD
Sbjct: 562 FLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSRMGKLQNLITLSLSQNKLQGPIPVEFGD 621
Query: 404 LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNS 463
L SLE LDLS N+ SG IP++ E L+YL+YLN+SFN+L+GEIP+G F F+ SFM N
Sbjct: 622 LVSLESLDLSQNNLSGTIPKTLEALIYLKYLNVSFNKLQGEIPNGGPFVKFTAESFMFNE 681
Query: 464 FLCGSPNLQV 473
LCG+P+ QV
Sbjct: 682 ALCGAPHFQV 691
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483677|ref|XP_003633000.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO2-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 427 bits (1098), Expect = e-117, Method: Compositional matrix adjust.
Identities = 241/506 (47%), Positives = 318/506 (62%), Gaps = 33/506 (6%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ F +N+L+GSLP D+C+HLP LQ L ++ NH++G +P L C EL+ +SLS N+ G
Sbjct: 369 IAFTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGS 428
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG------------- 107
IP++IGNL+ + LG N+LIG IP GNL L++L L NN G
Sbjct: 429 IPKEIGNLSKLEKIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQ 488
Query: 108 -----PRH-------------SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
H S+LE L++ N FSG IP I N SKL++LG+ NSF+G
Sbjct: 489 SLAMVKNHLSGSLPSSIGTWLSDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTG 548
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
+P + NL L+ LDL+ N LT SE+ FL+SL NC+ LK + + N G LP+S
Sbjct: 549 NVPKDLGNLTKLKVLDLAGNQLTDEHVASEVGFLTSLTNCKFLKNLWIGNNPFKGTLPNS 608
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNL +LE C+ G IP IGNL NLI + LG N LTGSIP +LG+L+KLQ L+
Sbjct: 609 LGNLPIALESFIASACQFRGTIPTRIGNLTNLIWLDLGANDLTGSIPTTLGRLKKLQKLH 668
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
+ N+L GSIP+ LC+L L L NKL GSIP+C G L L+ L L SNVL + IP+
Sbjct: 669 IVGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPALQELFLDSNVLAFNIPT 728
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+ SLRD+LV N SSN L G+LP ++GN+K + +DLS+N +S IP +G NLA S
Sbjct: 729 SLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGHIPRKMGEQQNLAKLS 788
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+ NKLQG IP GDL SLE LDLS N+ SG IP+S E L+YL+YLN+S N+L+GEIP+
Sbjct: 789 LSQNKLQGPIPIEFGDLVSLESLDLSQNNLSGTIPKSLEALIYLKYLNVSLNKLQGEIPN 848
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQV 473
G F NF+ SFM N LCG+P+ QV
Sbjct: 849 GGPFINFTAESFMFNEALCGAPHFQV 874
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255572272|ref|XP_002527075.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] gi|223533580|gb|EEF35319.1| serine-threonine protein kinase, plant-type, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 426 bits (1094), Expect = e-116, Method: Compositional matrix adjust.
Identities = 248/506 (49%), Positives = 322/506 (63%), Gaps = 33/506 (6%)
Query: 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDI 65
N L+G+L + +C +LQ L++ N + G +P +L++C+EL +++L N+ TG IPR I
Sbjct: 225 NNLSGNLKEILCNQNSKLQLLNLAGNQLYGQIPSDLYKCKELRSLALHANKFTGSIPRTI 284
Query: 66 GNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP-RHS------------- 111
GNLT + L LG NNL G IP EIGNL NL+ + L NN +G H+
Sbjct: 285 GNLTKLKWLSLGRNNLTGRIPLEIGNLQNLQIVHLSFNNLNGSIPHALFNISTMKWIAMT 344
Query: 112 -----------------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST 154
NL LYL N SG IPS+I NASKL+IL + +NSF+G IP +
Sbjct: 345 SNNLLGNLPTSLGLHLPNLIWLYLGINKLSGPIPSYISNASKLTILELPSNSFTGFIPDS 404
Query: 155 IANLRNLQWLDLSFNYLTS--STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212
+ +LRNLQ L L N L+S ++ EL+ SSL+NC+NLK + L+ N L G LP S+GNLS
Sbjct: 405 LGDLRNLQTLKLGANLLSSKKTSQELTIFSSLKNCQNLKYLWLSYNPLDGYLPHSVGNLS 464
Query: 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
SLE G + E IGNL +L ++LG N LTG IP ++G L+ LQGLYL+ N
Sbjct: 465 NSLESFLASDGLIKGSVHESIGNLSSLTRLNLGNNDLTGRIPTTIGTLKHLQGLYLHGND 524
Query: 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
L+GSIP LC+L L L+ NKL GSIP C L+ LRNL L SN I ST +L
Sbjct: 525 LDGSIPSELCDLRTLYNLELTGNKLSGSIPTCFSNLTSLRNLFLASNRFVSTISSTLWTL 584
Query: 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392
+DIL N +SN L GSLP +I NL+ V I++S+N LS IP IGGL +LA L+ NK
Sbjct: 585 KDILQVNLASNYLTGSLPSEIENLRAVYMINISKNQLSGEIPISIGGLQDLAQLYLSGNK 644
Query: 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452
LQG IP+S+GD++SLEFLDLS+N+ SG IP+S + LLYL+Y N+SFN L+GEIP G SF+
Sbjct: 645 LQGPIPQSVGDIKSLEFLDLSSNNLSGMIPKSLDNLLYLKYFNVSFNYLQGEIPEGGSFS 704
Query: 453 NFSDNSFMGNSFLCGSPNLQVPPRKD 478
NFS SF+GN LCGS LQV P KD
Sbjct: 705 NFSAQSFIGNEALCGSARLQVSPCKD 730
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359497186|ref|XP_003635448.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 418 bits (1075), Expect = e-114, Method: Compositional matrix adjust.
Identities = 236/504 (46%), Positives = 314/504 (62%), Gaps = 33/504 (6%)
Query: 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
F +N+L+GSLP D+C+HLP LQ L ++ NH++G +P L C EL+ +SLS N+ G IP
Sbjct: 282 FTDNSLSGSLPKDICKHLPNLQGLSLSQNHLSGQLPTTLSLCGELLFLSLSFNKFRGSIP 341
Query: 63 RDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS----------- 111
++IGNL+ + LG N+LIG IP GNL L++L L NN G
Sbjct: 342 KEIGNLSKLEEIYLGTNSLIGSIPTSFGNLKALKFLNLGINNLTGTVPEAIFNISKLQSL 401
Query: 112 --------------------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTI 151
+LE L++ N FSG IP I N SKL++LG+ NSF+G +
Sbjct: 402 AMVKNHLSGSLPSSIGTWLPDLEGLFIAGNEFSGIIPMSISNMSKLTVLGLSANSFTGNV 461
Query: 152 PSTIANLRNLQWLDLSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
P + NL L+ LDL+ N LT SE+ FL+SL NC+ LK + + G LP+S+G
Sbjct: 462 PKDLGNLTKLKVLDLAGNQLTDEHVASEVGFLTSLTNCKFLKNLWIGNIPFKGTLPNSLG 521
Query: 210 NLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269
NL +LE C+ G IP IGNL NLI + LG N LTGSIP +LG+LQKLQ LY+
Sbjct: 522 NLPIALESFIASACQFRGTIPTGIGNLTNLIRLDLGANDLTGSIPTTLGQLQKLQWLYIA 581
Query: 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTF 329
N++ GSIP+ LC+L L L NKL GSIP+C G L L+ L L SNVL + IP++
Sbjct: 582 GNRIRGSIPNDLCHLKDLGYLFLSSNKLSGSIPSCFGDLLALQELFLDSNVLAFNIPTSL 641
Query: 330 LSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389
SLRD+L N SSN L G+LP ++GN+K + +DLS+N +S IP+ +G L +L SL+
Sbjct: 642 WSLRDLLALNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPSKMGKLQSLITLSLS 701
Query: 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE 449
N+LQG IP GDL SLE LDLS N+ SG IP+S E L+YL+YLN+S N+L+GEIP+G
Sbjct: 702 QNRLQGPIPIEFGDLVSLESLDLSQNNLSGTIPKSLEALIYLKYLNVSLNKLQGEIPNGG 761
Query: 450 SFANFSDNSFMGNSFLCGSPNLQV 473
F NF+ SFM N LCG+P+ QV
Sbjct: 762 PFINFTAESFMFNEALCGAPHFQV 785
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483683|ref|XP_003633001.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 413 bits (1061), Expect = e-112, Method: Compositional matrix adjust.
Identities = 239/506 (47%), Positives = 315/506 (62%), Gaps = 33/506 (6%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHV------------------------TGP 36
+DF NN+L+G LP D+C+HLP LQ L ++ NH+ TG
Sbjct: 368 IDFTNNSLSGGLPMDICKHLPNLQGLYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTGS 427
Query: 37 VPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLE 96
+PR++ +L I LS N L G IP GNL + + L LG+NNL G IP +I N+ L+
Sbjct: 428 IPRDIGNLSKLEKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLTGTIPEDIFNISKLQ 487
Query: 97 YLVLENNNFDGPRHS-------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
L L N+ G S +LE L++ N FSGTIP I N SKL L I N F+G
Sbjct: 488 TLALAQNHLSGGLPSSIGTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFTG 547
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
+P ++NLR L+ L+L+ N LT TSE+ FL+SL NC+ L+ + + N L G LP+S
Sbjct: 548 NVPKDLSNLRKLEVLNLAGNQLTDEHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLPNS 607
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNLS +LE C G IP IGNL NLI + LG N LTGSIP +LG LQKLQ LY
Sbjct: 608 LGNLSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGHLQKLQRLY 667
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
+ N+++GSIP+ LC+L L L NKL GSIP+C G L LR L L SNVL + IP
Sbjct: 668 IAGNRIQGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPM 727
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+F SLRD++V + SSN L G+LP ++GN+K + +DLS+N +S IP +G L NL
Sbjct: 728 SFWSLRDLMVLSLSSNFLTGNLPPEVGNMKSITTLDLSKNLISGYIPRRMGELQNLVNLC 787
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+ NKLQGSIP GDL SLE +DLS N+ G IP+S E L+YL++LN+SFN+L+GEIP+
Sbjct: 788 LSQNKLQGSIPVEFGDLLSLESMDLSQNNLFGTIPKSLEALIYLKHLNVSFNKLQGEIPN 847
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQV 473
G F NF+ SF+ N LCG+P+ QV
Sbjct: 848 GGPFVNFTAESFIFNEALCGAPHFQV 873
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359485453|ref|XP_003633276.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At3g47570-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1059), Expect = e-112, Method: Compositional matrix adjust.
Identities = 248/526 (47%), Positives = 323/526 (61%), Gaps = 40/526 (7%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ FANN+L+GSLP D+C+HLP LQ L ++ N ++G +P L C EL+ ++L++N TG
Sbjct: 339 IGFANNSLSGSLPMDICKHLPNLQWLLLSLNQLSGQLPTTLSLCGELLTLTLAYNNFTGS 398
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRH-------- 110
IPR+IGNL+ + ++ G IP E+GNL NL++L L NN G P
Sbjct: 399 IPREIGNLSKLEQIYFRRSSFTGNIPKELGNLVNLQFLSLNVNNLTGIVPEAIFNISKLQ 458
Query: 111 ---------------------SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
NLE+L + N FSG IP I N S L L I N F G
Sbjct: 459 VLSLAGNHLSGSLPSSIGSWLPNLEQLLIGGNEFSGIIPMSISNMSNLISLDISDNFFIG 518
Query: 150 TIPSTIANLRNLQWLDLSFNYLTS--STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
+P + NLR LQ L LS N LT+ S SEL+FL+SL NC L+ + ++ N L G++P+S
Sbjct: 519 NVPKDLGNLRQLQLLGLSHNQLTNEHSASELAFLTSLTNCIFLRTLSISDNPLKGMIPNS 578
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNLS SLE IY C+ G IP I NL NLI + L N LTG IP G+LQKLQ L
Sbjct: 579 LGNLSISLEIIYASDCQLRGTIPTGISNLTNLIGLRLDDNDLTGLIPTPFGRLQKLQMLS 638
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
+ +N++ GSIP LC+L L L NKL G+IP+C G L+ LRN+ LHSN L IPS
Sbjct: 639 ISQNRIHGSIPSGLCHLTNLAFLDLSSNKLSGTIPSCSGNLTGLRNVYLHSNGLASEIPS 698
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+ +LR +LV N SSN LN LPL +GN+K +V +DLS+N S +IP+ I L NL
Sbjct: 699 SLCNLRGLLVLNLSSNFLNSQLPLQVGNMKSLVALDLSKNQFSGNIPSTISLLQNLLQLY 758
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L++NKLQG IP + GDL SLE LDLS N+ SG IP+S E L YLEYLN+SFN+L+GEIP+
Sbjct: 759 LSHNKLQGHIPPNFGDLVSLESLDLSGNNLSGTIPKSLEHLKYLEYLNVSFNKLQGEIPN 818
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQVPPRKDIKTSPHRKSRKNTRS 493
G FANF+ SF+ N LCG+P QV + + SRKNT+S
Sbjct: 819 GGPFANFTAESFISNLALCGAPRFQV-------MACEKDSRKNTKS 857
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|359483675|ref|XP_003632999.1| PREDICTED: LRR receptor-like serine/threonine-protein kinase GSO1-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 412 bits (1058), Expect = e-112, Method: Compositional matrix adjust.
Identities = 240/506 (47%), Positives = 315/506 (62%), Gaps = 33/506 (6%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGP------------------------ 36
+DF NN+L+G LP D+C+HLP LQ L ++ NH++G
Sbjct: 368 IDFTNNSLSGGLPMDICKHLPNLQGLYLSQNHLSGQLPTTLFLCGELLLLSLSINKFTRS 427
Query: 37 VPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLE 96
+PR++ +L I LS N L G IP GNL + + L LG+NNLIG IP +I N+ L+
Sbjct: 428 IPRDIGNLSKLKKIYLSTNSLIGSIPTSFGNLKALKFLQLGSNNLIGTIPEDIFNISKLQ 487
Query: 97 YLVLENNNFDGPRHS-------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
L L N+ G S +LE L++ N FSGTIP I N SKL L I N F G
Sbjct: 488 TLALAQNHLSGGLPSSISTWLPDLEGLFIGGNEFSGTIPVSISNMSKLIRLHISDNYFIG 547
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
+P ++NLR L+ L+L+ N LT TSE+ FL+SL NC+ L+ + + N L G LP+S
Sbjct: 548 NVPKDLSNLRKLEVLNLAGNQLTDEHLTSEVGFLTSLTNCKFLRTLWIDYNPLKGTLPNS 607
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNLS +LE C G IP IGNL NLI + LG N LTGSIP +LG+LQKLQ LY
Sbjct: 608 LGNLSVALESFTASACHFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTTLGQLQKLQRLY 667
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
+ N+++GSIP+ L +L L L NKL GSIP+C G L LR L L SNVL + IP
Sbjct: 668 IAGNRIQGSIPNDLFHLKNLGYLHLSSNKLSGSIPSCFGDLPALRELSLDSNVLAFNIPM 727
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+F SLRD+LV + SSN L G+LP ++GN+K + +DLS+N +S IP +G L NL
Sbjct: 728 SFWSLRDLLVLSLSSNFLTGNLPPEVGNMKSITTLDLSKNLISGYIPRRMGELQNLVNLC 787
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+ NKLQGSIP GDL SLE +DLS N+ SG IP+S E L+YL++LN+SFN+L+GEIP
Sbjct: 788 LSQNKLQGSIPVEFGDLLSLESMDLSQNNLSGTIPKSLEALIYLKHLNVSFNKLQGEIPD 847
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQV 473
G F NF+ SF+ N LCG+P+ QV
Sbjct: 848 GGPFVNFTAESFIFNEALCGAPHFQV 873
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224116832|ref|XP_002317405.1| predicted protein [Populus trichocarpa] gi|222860470|gb|EEE98017.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1055), Expect = e-112, Method: Compositional matrix adjust.
Identities = 251/522 (48%), Positives = 315/522 (60%), Gaps = 37/522 (7%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D +N TGS+P ++C L +L+ L + N++TG +P + + L + L N L G
Sbjct: 192 LDLESNRFTGSIPKEICT-LTKLKELYLGKNNLTGQIPGEIARLVSLEKLGLEVNGLNGN 250
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS--------- 111
IPR+IGN T + + NNNL G IP+E+GNLH L+ L L NN G S
Sbjct: 251 IPREIGNCTYLMEIHVENNNLTGVIPNEMGNLHTLQELDLGFNNITGSIPSTFFNFSILR 310
Query: 112 ----------------------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
NLE LYLE+N SG IP I NASKL +L + NSFSG
Sbjct: 311 RVNMAYNYLSGHLPSNTGLGLPNLEELYLEKNELSGPIPDSIGNASKLIVLDLSYNSFSG 370
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLR--NCRNLKVIDLTGNQLHGILPSS 207
IP + NLRNLQ L+L+ N LTS + NCR+L + GN L G LP S
Sbjct: 371 RIPDLLGNLRNLQKLNLAENILTSKSLRSELSFLSSLSNCRSLAYLRFNGNPLRGRLPVS 430
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNLS SLE +Y CR G IP IGNL NLI + L N+LTG+IP +G+L+ LQ
Sbjct: 431 IGNLSASLEELYAFDCRIIGNIPRGIGNLSNLIGLILQQNELTGAIPSEIGRLKHLQDFS 490
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
L NKL+G IP+ +C+L RL L +N GS+PAC+ ++ LR L L SN T IP+
Sbjct: 491 LASNKLQGHIPNEICHLERLSYLYLLENGFSGSLPACLSNITSLRELYLGSNRFT-SIPT 549
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
TF SL+D+L N S NSL G+LPL+IGNLKVV ID S N LS IPT I L NLA FS
Sbjct: 550 TFWSLKDLLQINLSFNSLTGTLPLEIGNLKVVTVIDFSSNQLSGDIPTSIADLQNLAHFS 609
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+ N++QG IP S GDL SLEFLDLS NS SG IP+S EKL++L+ N+SFNRL+GEI
Sbjct: 610 LSDNRMQGPIPSSFGDLVSLEFLDLSRNSLSGAIPKSLEKLVHLKTFNVSFNRLQGEILD 669
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQVPPRKDIKTSPHRKSRK 489
G FANFS SFM N LCG +QVPP K I T HR+S++
Sbjct: 670 GGPFANFSFRSFMDNEALCGPIRMQVPPCKSIST--HRQSKR 709
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147852480|emb|CAN78527.1| hypothetical protein VITISV_039533 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 410 bits (1053), Expect = e-111, Method: Compositional matrix adjust.
Identities = 237/506 (46%), Positives = 315/506 (62%), Gaps = 33/506 (6%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ F+NN+L+GSLP D+C+HLP LQ LD+ NH++G +P L C+EL+ +SLS N+ G
Sbjct: 369 IGFSNNSLSGSLPMDICKHLPNLQWLDLALNHLSGQLPTTLSLCRELLVLSLSFNKFRGS 428
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS--------- 111
IPR+IGNL+ + L +N+L+G IP GNL L++L L NN G
Sbjct: 429 IPREIGNLSKLEWIDLSSNSLVGSIPTSFGNLMALKFLNLGINNLTGTVPEAIFNISKLQ 488
Query: 112 ----------------------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
+LE L++ N FSG IP I N SKL+ L + NSF G
Sbjct: 489 SLAMAINHLSGSLPSSIGTWLPDLEGLFIGGNEFSGIIPVSISNMSKLTQLDVSRNSFIG 548
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
+P + NL L+ L+L+ N T+ SE+SFL+SL NC+ LK + + N G LP+S
Sbjct: 549 NVPKDLGNLTKLEVLNLAGNQFTNEHLASEVSFLTSLTNCKFLKNLWIGNNPFKGTLPNS 608
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNL +LE C+ G IP IGNL NLI + LG N LTGSIP LG+L+KLQ L+
Sbjct: 609 LGNLPIALESFIASACQFRGTIPTGIGNLTNLIWLDLGANDLTGSIPTILGRLKKLQRLH 668
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
+ N+L GSIP+ LC+L L L NKL GSIP+C G L L+ L L SNVL + IP+
Sbjct: 669 IAGNRLRGSIPNDLCHLKNLGYLHLSSNKLSGSIPSCFGDLPALQELFLDSNVLAFNIPT 728
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+ SLRD+LV N SSN L G+LP ++GN+K + +DLS+N +S IP +G NLA S
Sbjct: 729 SLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPRRMGEQQNLAKLS 788
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+ N+LQG IP GDL SLE LDLS N+ SG IP+S E L+YL+YLN+S N+L+GEIP+
Sbjct: 789 LSQNRLQGPIPVEFGDLVSLESLDLSQNNLSGTIPKSLEALIYLKYLNVSSNKLQGEIPN 848
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQV 473
G F NF+ SFM N LCG+P+ QV
Sbjct: 849 GGPFVNFTAESFMFNEALCGAPHFQV 874
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147769371|emb|CAN72496.1| hypothetical protein VITISV_010511 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 407 bits (1045), Expect = e-111, Method: Compositional matrix adjust.
Identities = 236/506 (46%), Positives = 315/506 (62%), Gaps = 33/506 (6%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+DF+NN+L+GSLP D+C+HLP LQ L + NH++G +P L C EL+ +SL+ N+ G
Sbjct: 381 IDFSNNSLSGSLPMDICKHLPNLQGLYLLQNHLSGQLPTTLSLCGELLYLSLAVNKFRGS 440
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYL---------------------- 98
IPR+IGNL+ + L +N+L+G IP GNL L+YL
Sbjct: 441 IPREIGNLSKLEDISLRSNSLVGSIPTSFGNLMALKYLDLGMNFLTGTVPEAIFNISELQ 500
Query: 99 --VLENNNFDG-------PRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG 149
VL N+ G +LE LY+ N FSGTIP I N SKL L + NSF+G
Sbjct: 501 ILVLVQNHLSGSLPPSIGTWLPDLEGLYIGSNKFSGTIPMSISNMSKLIQLQVWDNSFTG 560
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
+P + NL L+ L+L+ N LT+ S + FL+SL NC+ L+ + + N G LP+S
Sbjct: 561 NVPKDLGNLTKLEVLNLAANQLTNEHLASGVGFLTSLTNCKFLRHLWIDDNPFKGTLPNS 620
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
+GNL +LE C+ G IP IGNL NLI + LG N LT SIP +LG+LQKLQ L+
Sbjct: 621 LGNLPIALESFTASACQFRGTIPTGIGNLTNLIELDLGANDLTRSIPTTLGRLQKLQRLH 680
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS 327
+ N++ GSIP+ LC+L L L NKL GSIP+C G L L+ L L SNVL + IP+
Sbjct: 681 IAGNRIRGSIPNDLCHLKNLGYLHLXSNKLSGSIPSCFGDLPALQELFLDSNVLAFNIPT 740
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+ SLRD+LV N SSN L G+LP ++GN+K + +DLS+N +S IP +G NLA S
Sbjct: 741 SLWSLRDLLVLNLSSNFLTGNLPPEVGNMKSITTLDLSKNLVSGYIPRRMGEQQNLAKLS 800
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+ N+LQG IP GDL SLE LDLS N+ SG IP+S E L+YL+YLN+S N+L+GEIP+
Sbjct: 801 LSQNRLQGPIPXEFGDLVSLESLDLSQNNLSGTIPKSLEALIYLKYLNVSSNKLQGEIPN 860
Query: 448 GESFANFSDNSFMGNSFLCGSPNLQV 473
G F NF+ SFM N LCG+P+ QV
Sbjct: 861 GGPFXNFTAESFMFNEALCGAPHFQV 886
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 508 | ||||||
| TAIR|locus:2149922 | 1031 | EFR "EF-TU receptor" [Arabidop | 0.962 | 0.474 | 0.313 | 1.1e-60 | |
| UNIPROTKB|O24435 | 813 | O24435 "Receptor kinase-like p | 0.919 | 0.574 | 0.341 | 1.9e-60 | |
| UNIPROTKB|Q40640 | 1025 | Xa21 "Receptor kinase-like pro | 0.933 | 0.462 | 0.345 | 2.9e-59 | |
| TAIR|locus:2075661 | 1025 | AT3G47110 [Arabidopsis thalian | 0.931 | 0.461 | 0.338 | 1.9e-56 | |
| TAIR|locus:2092810 | 1164 | BRL3 "BRI1-like 3" [Arabidopsi | 0.744 | 0.324 | 0.293 | 5.8e-53 | |
| TAIR|locus:2079142 | 1010 | AT3G47570 [Arabidopsis thalian | 0.921 | 0.463 | 0.316 | 7.4e-53 | |
| TAIR|locus:2079157 | 1011 | AT3G47580 [Arabidopsis thalian | 0.952 | 0.478 | 0.303 | 1.3e-52 | |
| TAIR|locus:2085949 | 1141 | AT3G24240 [Arabidopsis thalian | 0.976 | 0.434 | 0.322 | 1.7e-52 | |
| TAIR|locus:2032697 | 1123 | PEPR1 "PEP1 receptor 1" [Arabi | 0.911 | 0.412 | 0.316 | 4.4e-52 | |
| TAIR|locus:2170483 | 1173 | FLS2 "FLAGELLIN-SENSITIVE 2" [ | 0.903 | 0.391 | 0.311 | 8.1e-52 |
| TAIR|locus:2149922 EFR "EF-TU receptor" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 628 (226.1 bits), Expect = 1.1e-60, P = 1.1e-60
Identities = 157/501 (31%), Positives = 243/501 (48%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N L +P ++ L +L LD++ N++TG P +L L + ++NQ+ G
Sbjct: 150 VDLSSNHLGHGVPSELGS-LSKLAILDLSKNNLTGNFPASLGNLTSLQKLDFAYNQMRGE 208
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDGPRHS-------NL 113
IP ++ LT G P + N+ +LE L L +N+F G + NL
Sbjct: 209 IPDEVARLTQMVFFQIALNSFSGGFPPALYNISSLESLSLADNSFSGNLRADFGYLLPNL 268
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN-YXX 172
RL L N F+G IP + N S L I +N SG+IP + LRNL WL + N
Sbjct: 269 RRLLLGTNQFTGAIPKTLANISSLERFDISSNYLSGSIPLSFGKLRNLWWLGIRNNSLGN 328
Query: 173 XXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
NC L+ +D+ N+L G LP+S+ NLST+L +++ SG IP +
Sbjct: 329 NSSSGLEFIGAVANCTQLEYLDVGYNRLGGELPASIANLSTTLTSLFLGQNLISGTIPHD 388
Query: 233 IGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQF 292
IGNL++L +SL N L+G +P+S G IP N+ RL +L
Sbjct: 389 IGNLVSLQELSLETNMLSGELPVSFGKLLNLQVVDLYSNAISGEIPSYFGNMTRLQKLHL 448
Query: 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXD 352
N G IP +G+ L +L + +N L IP L + + +
Sbjct: 449 NSNSFHGRIPQSLGRCRYLLDLWMDTNRLNGTIPQEILQIPSLAYIDLSNNFLTGHFPEE 508
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412
+G L+++VG+ S N LS +P IGG ++ F + N G+IP+ + L SL+ +D
Sbjct: 509 VGKLELLVGLGASYNKLSGKMPQAIGGCLSMEFLFMQGNSFDGAIPD-ISRLVSLKNVDF 567
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSPN-L 471
SNN+ SG IPR L L LNLS N+ +G +P+ F N + S GN+ +CG +
Sbjct: 568 SNNNLSGRIPRYLASLPSLRNLNLSMNKFEGRVPTTGVFRNATAVSVFGNTNICGGVREM 627
Query: 472 QVPPRKDIKTSPHRKSRKNTR 492
Q+ P ++ SP ++ + R
Sbjct: 628 QLKPCI-VQASPRKRKPLSVR 647
|
|
| UNIPROTKB|O24435 O24435 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 619 (223.0 bits), Expect = 1.9e-60, P = 1.9e-60
Identities = 164/480 (34%), Positives = 237/480 (49%)
Query: 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDI 65
N+L+G +P + +L L L++ NN ++G +P +L + L ++L+ N L+G IP
Sbjct: 136 NSLSGEIPAAL-GNLTSLSVLELTNNTLSGAIPSSLGKLTGLTDLALAENTLSGSIPSSF 194
Query: 66 GNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDG--PRH--SNL---ERLYL 118
G L G IP I N+ +L + +N G P + SNL + +Y+
Sbjct: 195 GQLRRLSFLSLAFNNLSGAIPDPIWNISSLTIFEVISNKLSGTLPTNAFSNLPSLQEVYM 254
Query: 119 ERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXX 178
N F G IP+ I NAS +SI I NSFSG +P I +RNLQ L+L
Sbjct: 255 YYNQFHGRIPASIGNASNISIFTIGLNSFSGVVPPEIGRMRNLQRLELPETLSEAEETND 314
Query: 179 -XXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237
NC NL+ ++L G + G+LP S+ NLS+SL + + + SG +P +IGNL+
Sbjct: 315 WKFMTALTNCSNLQEVELGGCKFGGVLPDSVSNLSSSLVSLSIRDNKISGSLPRDIGNLV 374
Query: 238 NLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKL 297
NL +SL N LTGS+P S GS+P ++ NL +L ++ N
Sbjct: 375 NLQYLSLANNSLTGSLPSSFSKLKNLRRLTVDNNKLIGSLPLTIGNLTQLTNMEVQFNAF 434
Query: 298 FGSIPACIGKLSPLRNLLL-HSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXX-XDIGN 355
G+IP+ +G L+ L + L H+N + IP S+ + +IG
Sbjct: 435 GGTIPSTLGNLTKLFQINLGHNNFIGQ-IPIEIFSIPALSEILDVSHNNLEGSIPKEIGK 493
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
LK +V N LS P+ IG L L N L GSIP +L L+ L+ LDLS N
Sbjct: 494 LKNIVEFHADSNKLSGENPSTIGECQLLQHLFLQNNFLNGSIPIALTQLKGLDTLDLSGN 553
Query: 416 SFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGS-PNLQVP 474
+ SG IP S + L LNLSFN GE+P+ FAN S+ GN+ +CG P L +P
Sbjct: 554 NLSGQIPMSLGDMPLLHSLNLSFNSFHGEVPTNGVFANASEIYIQGNAHICGGIPELHLP 613
|
|
| UNIPROTKB|Q40640 Xa21 "Receptor kinase-like protein" [Oryza sativa (taxid:4530)] | Back alignment and assigned GO terms |
|---|
Score = 615 (221.5 bits), Expect = 2.9e-59, P = 2.9e-59
Identities = 167/484 (34%), Positives = 234/484 (48%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N L G +P ++ L L L + N ++G +P L L LS N+L+G
Sbjct: 156 LDLSHNQLRGMIPREIGASLKHLSNLYLYKNGLSGEIPSALGNLTSLQEFDLSFNRLSGA 215
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDGPRHSN-------L 113
IP +G L+S G IP+ I NL +L + N G +N L
Sbjct: 216 IPSSLGQLSSLLTMNLGQNNLSGMIPNSIWNLSSLRAFSVRENKLGGMIPTNAFKTLHLL 275
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN-YXX 172
E + + N F G IP+ + NAS L+++ I N FSG I S LRNL L L N +
Sbjct: 276 EVIDMGTNRFHGKIPASVANASHLTVIQIYGNLFSGIITSGFGRLRNLTELYLWRNLFQT 335
Query: 173 XXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
NC L+ ++L N L G+LP+S NLSTSL ++ + + +G IP++
Sbjct: 336 REQDDWGFISDLTNCSKLQTLNLGENNLGGVLPNSFSNLSTSLSFLALELNKITGSIPKD 395
Query: 233 IGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQF 292
IGNLI L + L N GS+P S GSIP ++ NL L L
Sbjct: 396 IGNLIGLQHLYLCNNNFRGSLPSSLGRLKNLGILLAYENNLSGSIPLAIGNLTELNILLL 455
Query: 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXX-X 351
NK G IP + L+ L +L L +N L+ IPS +++ +
Sbjct: 456 GTNKFSGWIPYTLSNLTNLLSLGLSTNNLSGPIPSELFNIQTLSIMINVSKNNLEGSIPQ 515
Query: 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411
+IG+LK +V N LS IP +G L + L N L GSIP +LG L+ LE LD
Sbjct: 516 EIGHLKNLVEFHAESNRLSGKIPNTLGDCQLLRYLYLQNNLLSGSIPSALGQLKGLETLD 575
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGS-PN 470
LS+N+ SG IP S + L LNLSFN GE+P+ +FA S S GN+ LCG P+
Sbjct: 576 LSSNNLSGQIPTSLADITMLHSLNLSFNSFVGEVPTIGAFAAASGISIQGNAKLCGGIPD 635
Query: 471 LQVP 474
L +P
Sbjct: 636 LHLP 639
|
|
| TAIR|locus:2075661 AT3G47110 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 589 (212.4 bits), Expect = 1.9e-56, P = 1.9e-56
Identities = 164/484 (33%), Positives = 224/484 (46%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N L +P + L +L L + N++TG P +L L + +NQ+ G
Sbjct: 158 LDLSSNHLEQGVPLEFGS-LSKLVLLSLGRNNLTGKFPASLGNLTSLQMLDFIYNQIEGE 216
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDG---PRHS----NL 113
IP DI L G P I NL +L +L + N+F G P NL
Sbjct: 217 IPGDIARLKQMIFFRIALNKFNGVFPPPIYNLSSLIFLSITGNSFSGTLRPDFGSLLPNL 276
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN-YXX 172
+ LY+ N+F+GTIP + N S L L I +N +G IP + L+NL L L+ N
Sbjct: 277 QILYMGINSFTGTIPETLSNISSLRQLDIPSNHLTGKIPLSFGRLQNLLLLGLNNNSLGN 336
Query: 173 XXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
NC L+ +++ N+L G LP + NLST L + + SG IP
Sbjct: 337 YSSGDLDFLGALTNCSQLQYLNVGFNKLGGQLPVFIANLSTQLTELSLGGNLISGSIPHG 396
Query: 233 IGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQF 292
IGNL++L T+ LG N LTG +P S G IP SL N+ L L
Sbjct: 397 IGNLVSLQTLDLGENLLTGKLPPSLGELSELRKVLLYSNGLSGEIPSSLGNISGLTYLYL 456
Query: 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXD 352
+N GSIP+ +G S L +L L +N L IP + L + D
Sbjct: 457 LNNSFEGSIPSSLGSCSYLLDLNLGTNKLNGSIPHELMELPSLVVLNVSFNLLVGPLRQD 516
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412
IG LK ++ +D+S N LS IP + +L F L N G IP+ G L L FLDL
Sbjct: 517 IGKLKFLLALDVSYNKLSGQIPQTLANCLSLEFLLLQGNSFVGPIPDIRG-LTGLRFLDL 575
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGS-PNL 471
S N+ SG IP L+ LNLS N G +P+ F N S S GN LCG P+L
Sbjct: 576 SKNNLSGTIPEYMANFSKLQNLNLSLNNFDGAVPTEGVFRNTSAMSVFGNINLCGGIPSL 635
Query: 472 QVPP 475
Q+ P
Sbjct: 636 QLQP 639
|
|
| TAIR|locus:2092810 BRL3 "BRI1-like 3" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 381 (139.2 bits), Expect = 5.8e-53, Sum P(2) = 5.8e-53
Identities = 117/399 (29%), Positives = 177/399 (44%)
Query: 1 MDFANNTLTGSLPDDMCQHLPR-LQALDINNNHVTGPVPR-NLWQCQELIAISLSHNQLT 58
+D +NN + +P+ P L+ LD++ N+VTG R + C+ L SLS N ++
Sbjct: 180 VDLSNNRFSDEIPETFIADFPNSLKHLDLSGNNVTGDFSRLSFGLCENLTVFSLSQNSIS 239
Query: 59 G-LIPRDIGNLTSARAXXXXXXXXIGEIPHEI--GNLHNLEYLVLENNNFDG---PRHS- 111
G P + N IG+IP + GN NL L L +N + G P S
Sbjct: 240 GDRFPVSLSNCKLLETLNLSRNSLIGKIPGDDYWGNFQNLRQLSLAHNLYSGEIPPELSL 299
Query: 112 ---NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIAN-LRNLQWLDLS 167
LE L L N+ +G +P + L L + N SG ST+ + L + L L
Sbjct: 300 LCRTLEVLDLSGNSLTGQLPQSFTSCGSLQSLNLGNNKLSGDFLSTVVSKLSRITNLYLP 359
Query: 168 FNYXXXXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTS--LEYIYMPYCRR 225
FN NC NL+V+DL+ N+ G +PS +L +S LE + +
Sbjct: 360 FNNISGSVPISLT-----NCSNLRVLDLSSNEFTGEVPSGFCSLQSSSVLEKLLIANNYL 414
Query: 226 SGRIPEEIGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLC-NL 284
SG +P E+G +L T+ L N LTG IP G IP+S+C +
Sbjct: 415 SGTVPVELGKCKSLKTIDLSFNALTGLIPKEIWTLPKLSDLVMWANNLTGGIPESICVDG 474
Query: 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXX 344
G L L +N L GS+P I K + + + L SN+LT IP L +
Sbjct: 475 GNLETLILNNNLLTGSLPESISKCTNMLWISLSSNLLTGEIPVGIGKLEKLAILQLGNNS 534
Query: 345 XXXXXXXDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNL 383
++GN K ++ +DL+ NNL+ ++P + + L
Sbjct: 535 LTGNIPSELGNCKNLIWLDLNSNNLTGNLPGELASQAGL 573
|
|
| TAIR|locus:2079142 AT3G47570 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 541 (195.5 bits), Expect = 7.4e-53, Sum P(2) = 7.4e-53
Identities = 152/480 (31%), Positives = 220/480 (45%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
+N L GS+P ++ L L L++ N++ G +P +L L ++LSHN L G IP D
Sbjct: 147 SNRLGGSVPSELGS-LTNLVQLNLYGNNMRGKLPTSLGNLTLLEQLALSHNNLEGEIPSD 205
Query: 65 IGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDGPRHS-------NLERLY 117
+ LT + G P + NL +L+ L + N+F G NL
Sbjct: 206 VAQLTQIWSLQLVANNFSGVFPPALYNLSSLKLLGIGYNHFSGRLRPDLGILLPNLLSFN 265
Query: 118 LERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN-YXXXXXX 176
+ N F+G+IP+ + N S L LG+ N+ +G+IP T N+ NL+ L L N
Sbjct: 266 MGGNYFTGSIPTTLSNISTLERLGMNENNLTGSIP-TFGNVPNLKLLFLHTNSLGSDSSR 324
Query: 177 XXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNL 236
NC L+ + + N+L G LP S+ NLS L + + SG IP +IGNL
Sbjct: 325 DLEFLTSLTNCTQLETLGIGRNRLGGDLPISIANLSAKLVTLDLGGTLISGSIPYDIGNL 384
Query: 237 INLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNK 296
INL + L N L+G +P S G IP + N+ L L +N
Sbjct: 385 INLQKLILDQNMLSGPLPTSLGKLLNLRYLSLFSNRLSGGIPAFIGNMTMLETLDLSNNG 444
Query: 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNL 356
G +P +G S L L + N L IP + ++ + DIG L
Sbjct: 445 FEGIVPTSLGNCSHLLELWIGDNKLNGTIPLEIMKIQQLLRLDMSGNSLIGSLPQDIGAL 504
Query: 357 KVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416
+ + + L N LS +P +G + L N G IP+ G L ++ +DLSNN
Sbjct: 505 QNLGTLSLGDNKLSGKLPQTLGNCLTMESLFLEGNLFYGDIPDLKG-LVGVKEVDLSNND 563
Query: 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGS-PNLQVPP 475
SG IP F LEYLNLSFN L+G++P F N + S +GN+ LCG Q+ P
Sbjct: 564 LSGSIPEYFASFSKLEYLNLSFNNLEGKVPVKGIFENATTVSIVGNNDLCGGIMGFQLKP 623
|
|
| TAIR|locus:2079157 AT3G47580 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 537 (194.1 bits), Expect = 1.3e-52, Sum P(2) = 1.3e-52
Identities = 152/501 (30%), Positives = 220/501 (43%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D +N L +P ++ L +L LD+ N++ G +PR+L L ++ + N + G
Sbjct: 143 LDLYSNPLRQGVPSELGS-LTKLVILDLGRNNLKGKLPRSLGNLTSLKSLGFTDNNIEGE 201
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDG---PRHSNL---- 113
+P ++ L+ G P I NL LE L L + F G P NL
Sbjct: 202 VPDELARLSQMVGLGLSMNKFFGVFPPAIYNLSALEDLFLFGSGFSGSLKPDFGNLLPNI 261
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN-YXX 172
L L N+ G IP+ + N S L GI N +G I + +LQ+LDLS N
Sbjct: 262 RELNLGENDLVGAIPTTLSNISTLQKFGINKNMMTGGIYPNFGKVPSLQYLDLSENPLGS 321
Query: 173 XXXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
NC +L+++ + +L G LP+S+ N+ST L + + G IP++
Sbjct: 322 YTFGDLEFIDSLTNCTHLQLLSVGYTRLGGALPTSIANMSTELISLNLIGNHFFGSIPQD 381
Query: 233 IGNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQF 292
IGNLI L + LG N LTG +P S G IP + NL +L L
Sbjct: 382 IGNLIGLQRLQLGKNMLTGPLPTSLGKLLRLGLLSLYSNRMSGEIPSFIGNLTQLEILYL 441
Query: 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXD 352
+N G +P +GK S + +L + N L IP + + + D
Sbjct: 442 SNNSFEGIVPPSLGKCSHMLDLRIGYNKLNGTIPKEIMQIPTLVNLSMEGNSLSGSLPND 501
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412
IG+L+ +V + L N S +P +G + L N G+IP G L + +DL
Sbjct: 502 IGSLQNLVKLSLENNKFSGHLPQTLGNCLAMEQLFLQGNSFDGAIPNIRG-LMGVRRVDL 560
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGS---- 468
SNN SG IP F LEYLNLS N G++PS +F N + GN LCG
Sbjct: 561 SNNDLSGSIPEYFANFSKLEYLNLSINNFTGKVPSKGNFQNSTIVFVFGNKNLCGGIKDL 620
Query: 469 ---PNLQVPPRKDIKTSPHRK 486
P L P + K S H K
Sbjct: 621 KLKPCLAQEPPVETKHSSHLK 641
|
|
| TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 554 (200.1 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 166/515 (32%), Positives = 240/515 (46%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N L G +P + + L L+ L +N+N +TG +P ++ +C +L ++ L N LTG
Sbjct: 134 LDLSSNGLVGDIPWSLSK-LRNLETLILNSNQLTGKIPPDISKCSKLKSLILFDNLLTGS 192
Query: 61 IPRDIGNLTSARAXXXXXXXXI-GEIPHEIGNLHNLEYLVLENNNFDGPRHSNL------ 113
IP ++G L+ I G+IP EIG+ NL L L + G S+L
Sbjct: 193 IPTELGKLSGLEVIRIGGNKEISGQIPSEIGDCSNLTVLGLAETSVSGNLPSSLGKLKKL 252
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXX 173
E L + SG IPS + N S+L L + NS SG+IP I L L+ L L N
Sbjct: 253 ETLSIYTTMISGEIPSDLGNCSELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQN---- 308
Query: 174 XXXXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI 233
NC NLK+IDL+ N L G +PSS+G LS LE + + SG IP I
Sbjct: 309 -SLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIGRLSF-LEEFMISDNKFSGSIPTTI 366
Query: 234 GNLINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFY 293
N +L+ + L N+++G IP EGSIP L + L L
Sbjct: 367 SNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWSNQLEGSIPPGLADCTDLQALDLS 426
Query: 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDI 353
N L G+IP+ + L L LLL SN L+ IP + + I
Sbjct: 427 RNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIGNCSSLVRLRLGFNRITGEIPSGI 486
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
G+LK + +D S N L +P IG S L L+ N L+GS+P + L L+ LD+S
Sbjct: 487 GSLKKINFLDFSSNRLHGKVPDEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVS 546
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSPNLQV 473
N FSG IP S +L+ L L LS N G IP+ + +G++ L G ++
Sbjct: 547 ANQFSGKIPASLGRLVSLNKLILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSG----EI 602
Query: 474 PPRK-DIKTSPHRKSRKNTRSSARLPSSCEILPAL 507
P DI+ + + R + ++PS L L
Sbjct: 603 PSELGDIENLEIALNLSSNRLTGKIPSKIASLNKL 637
|
|
| TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 550 (198.7 bits), Expect = 4.4e-52, P = 4.4e-52
Identities = 154/487 (31%), Positives = 234/487 (48%)
Query: 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDI 65
N LTG LP+ + + +P+LQ L ++ N++TGP+P+++ +EL+ +S+ NQ +G IP I
Sbjct: 157 NFLTGELPESLFR-IPKLQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESI 215
Query: 66 GNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDGPRH------SNLERLYLE 119
GN +S + +G +P + L NL L + NN+ GP NL L L
Sbjct: 216 GNSSSLQILYLHRNKLVGSLPESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLS 275
Query: 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXXXXXX 179
N F G +P + N S L L I + + SGTIPS++ L+NL L+LS N
Sbjct: 276 YNEFEGGVPPALGNCSSLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAEL 335
Query: 180 XXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINL 239
NC +L ++ L NQL G +PS++G L LE + + R SG IP EI +L
Sbjct: 336 G-----NCSSLNLLKLNDNQLVGGIPSALGKLR-KLESLELFENRFSGEIPIEIWKSQSL 389
Query: 240 ITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDNKLFG 299
+ + N LTG +P+ G+IP L L E+ F NKL G
Sbjct: 390 TQLLVYQNNLTGELPVEMTEMKKLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTG 449
Query: 300 SIPA--CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXXDIGNLK 357
IP C G+ LR L L SN+L IP++ + I +
Sbjct: 450 EIPPNLCHGR--KLRILNLGSNLLHGTIPASIGHCKTIRRFILRENNLSGLLP-EFSQDH 506
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417
+ +D + NN IP +G NL+ +L+ N+ G IP LG+L++L +++LS N
Sbjct: 507 SLSFLDFNSNNFEGPIPGSLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLL 566
Query: 418 SGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFM---GNSFLCGSPNLQVP 474
G +P + LE ++ FN L G +PS +F+N+ + + N F G P +P
Sbjct: 567 EGSLPAQLSNCVSLERFDVGFNSLNGSVPS--NFSNWKGLTTLVLSENRFSGGIPQF-LP 623
Query: 475 PRKDIKT 481
K + T
Sbjct: 624 ELKKLST 630
|
|
| TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 548 (198.0 bits), Expect = 8.1e-52, P = 8.1e-52
Identities = 149/478 (31%), Positives = 228/478 (47%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ + N L G + +++ L L+ L +++N+ TG P+++ + L +++ N ++G
Sbjct: 317 LGLSENHLVGPISEEI-GFLESLEVLTLHSNNFTGEFPQSITNLRNLTVLTVGFNNISGE 375
Query: 61 IPRDIGNLTSARAXXXXXXXXIGEIPHEIGNLHNLEYLVLENNNFDG--PR---HSNLER 115
+P D+G LT+ R G IP I N L+ L L +N G PR NL
Sbjct: 376 LPADLGLLTNLRNLSAHDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTF 435
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYXXXXX 175
+ + RN+F+G IP IFN S L L + N+ +GT+ I L+ L+ L +S+N
Sbjct: 436 ISIGRNHFTGEIPDDIFNCSNLETLSVADNNLTGTLKPLIGKLQKLRILQVSYN-----S 490
Query: 176 XXXXXXXXXRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235
N ++L ++ L N G +P M NL T L+ + M G IPEE+ +
Sbjct: 491 LTGPIPREIGNLKDLNILYLHSNGFTGRIPREMSNL-TLLQGLRMYSNDLEGPIPEEMFD 549
Query: 236 LINLITMSLGINKLTGSIPISXXXXXXXXXXXXXXXXXEGSIPDSLCNLGRLVELQFYDN 295
+ L + L NK +G IP GSIP SL +L L DN
Sbjct: 550 MKLLSVLDLSNNKFSGQIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDN 609
Query: 296 KLFGSIPACIGKLSPLRNLLLH----SNVLTYVIPSTFLSLRDIXXXXXXXXXXXXXXXX 351
L G+IP + L+ L+N+ L+ +N+LT IP L +
Sbjct: 610 LLTGTIPGEL--LASLKNMQLYLNFSNNLLTGTIPKELGKLEMVQEIDLSNNLFSGSIPR 667
Query: 352 DIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
+ K V +D S+NNLS IP V G+ + +L+ N G IP+S G++ L L
Sbjct: 668 SLQACKNVFTLDFSQNNLSGHIPDEVFQGMDMIISLNLSRNSFSGEIPQSFGNMTHLVSL 727
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGS 468
DLS+N+ +G IP S L L++L L+ N LKG +P F N + + MGN+ LCGS
Sbjct: 728 DLSSNNLTGEIPESLANLSTLKHLKLASNNLKGHVPESGVFKNINASDLMGNTDLCGS 785
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
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 | eugene3.00110705 | hypothetical protein (1061 aa) | |||||||||
(Populus trichocarpa) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 508 | |||
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 4e-70 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 2e-65 | |
| PLN00113 | 968 | PLN00113, PLN00113, leucine-rich repeat receptor-l | 1e-64 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-16 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-12 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 5e-11 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-09 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 8e-09 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 5e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 9e-08 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 1e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 2e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 4e-07 | |
| PLN03150 | 623 | PLN03150, PLN03150, hypothetical protein; Provisio | 3e-06 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 1e-05 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 8e-05 | |
| COG4886 | 394 | COG4886, COG4886, Leucine-rich repeat (LRR) protei | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.002 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.003 | |
| pfam13855 | 60 | pfam13855, LRR_8, Leucine rich repeat | 0.004 | |
| PRK15370 | 754 | PRK15370, PRK15370, E3 ubiquitin-protein ligase Sl | 0.004 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 240 bits (615), Expect = 4e-70
Identities = 160/460 (34%), Positives = 243/460 (52%), Gaps = 17/460 (3%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
++ +NN L+G +PDD+ L+ L+++NN+ TG +PR E + LS+N L+G
Sbjct: 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPRGSIPNLE--TLDLSNNMLSGE 155
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRH----SNLE 114
IP DIG+ +S + L LG N L+G+IP+ + NL +LE+L L +N G PR +L+
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215
Query: 115 RLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
+YL NN SG IP I + L+ L + N+ +G IPS++ NL+NLQ+L L N L+
Sbjct: 216 WIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGP 275
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234
S+ + + L +DL+ N L G +P + L LE +++ +G+IP +
Sbjct: 276 IPP-----SIFSLQKLISLDLSDNSLSGEIPELVIQLQN-LEILHLFSNNFTGKIPVALT 329
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
+L L + L NK +G IP +LGK L L L N L G IP+ LC+ G L +L +
Sbjct: 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFS 389
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
N L G IP +G LR + L N + +PS F L + + S+N+L G +
Sbjct: 390 NSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKW 449
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
++ + + L+RN +P G L L+ N+ G++P LG L L L LS
Sbjct: 450 DMPSLQMLSLARNKFFGGLPDSFGS-KRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSE 508
Query: 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
N SG IP L L+LS N+L G+IP+ SF+
Sbjct: 509 NKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPA--SFSEM 546
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 227 bits (581), Expect = 2e-65
Identities = 157/423 (37%), Positives = 216/423 (51%), Gaps = 33/423 (7%)
Query: 47 LIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFD 106
+++I LS ++G I I L + + L NN L G IP +I
Sbjct: 71 VVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTS------------- 117
Query: 107 GPRHSNLERLYLERNNFSGTIPS-FIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165
S+L L L NNF+G+IP I N L L + N SG IP+ I + +L+ LD
Sbjct: 118 ----SSLRYLNLSNNNFTGSIPRGSIPN---LETLDLSNNMLSGEIPNDIGSFSSLKVLD 170
Query: 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225
L N L +SL N +L+ + L NQL G +P +G + SL++IY+ Y
Sbjct: 171 LGGNVLVGKIP-----NSLTNLTSLEFLTLASNQLVGQIPRELGQMK-SLKWIYLGYNNL 224
Query: 226 SGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLG 285
SG IP EIG L +L + L N LTG IP SLG L+ LQ L+LY+NKL G IP S+ +L
Sbjct: 225 SGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQ 284
Query: 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSL 345
+L+ L DN L G IP + +L L L L SN T IP SL + V SN
Sbjct: 285 KLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKF 344
Query: 346 NGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405
+G +P ++G + +DLS NNL+ IP + NL L N L+G IP+SLG R
Sbjct: 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACR 404
Query: 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE------SFANFSDNSF 459
SL + L +NSFSG +P F KL + +L++S N L+G I S + + + N F
Sbjct: 405 SLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKF 464
Query: 460 MGN 462
G
Sbjct: 465 FGG 467
|
Length = 968 |
| >gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Score = 225 bits (575), Expect = 1e-64
Identities = 176/477 (36%), Positives = 237/477 (49%), Gaps = 50/477 (10%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D +NN L+G +P+D+ L+ LD+ N + G +P +L L ++L+ NQL G
Sbjct: 145 LDLSNNMLSGEIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQ 203
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLE 114
IPR++G + S + + LG NNL GEIP+EIG L +L +L L NN GP NL+
Sbjct: 204 IPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQ 263
Query: 115 RLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
L+L +N SG IP IF+ KL L + NS SG IP + L+NL+ L L N T
Sbjct: 264 YLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGK 323
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234
L+SL L+V+ L N+ SG IP+ +G
Sbjct: 324 IPVA--LTSL---PRLQVLQLWSNKF-------------------------SGEIPKNLG 353
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSL--CNLGRLVELQF 292
NL + L N LTG IP L L L L+ N LEG IP SL C R V LQ
Sbjct: 354 KHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQ- 412
Query: 293 YDNKLFGSIPACIGKLSPLRNLL-LHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351
DN G +P+ KL PL L + +N L I S + + + + + N G LP
Sbjct: 413 -DNSFSGELPSEFTKL-PLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLP- 469
Query: 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411
D K + +DLSRN S ++P +G LS L L+ NKL G IP+ L + L LD
Sbjct: 470 DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLD 529
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG----ESF--ANFSDNSFMGN 462
LS+N SG IP SF ++ L L+LS N+L GEIP ES N S N G+
Sbjct: 530 LSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGS 586
|
Length = 968 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 3e-16
Identities = 50/123 (40%), Positives = 67/123 (54%), Gaps = 14/123 (11%)
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417
+ G+ L L IP I L +L +L+ N ++G+IP SLG + SLE LDLS NSF
Sbjct: 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSF 478
Query: 418 SGFIPRSFEKLLYLEYLNLSFNRLKGEIPS--------GESFANFSDNSFMGNSFLCGSP 469
+G IP S +L L LNL+ N L G +P+ SF NF+D N+ LCG P
Sbjct: 479 NGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF-NFTD-----NAGLCGIP 532
Query: 470 NLQ 472
L+
Sbjct: 533 GLR 535
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 4e-12
Identities = 31/90 (34%), Positives = 50/90 (55%), Gaps = 1/90 (1%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ N L G +P+D+ + L LQ+++++ N + G +P +L L + LS+N G
Sbjct: 423 LGLDNQGLRGFIPNDISK-LRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIG 90
IP +G LTS R L L N+L G +P +G
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 5e-11
Identities = 37/98 (37%), Positives = 54/98 (55%), Gaps = 3/98 (3%)
Query: 249 LTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308
L G IP + KL+ LQ + L N + G+IP SL ++ L L N GSIP +G+L
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489
Query: 309 SPLRNLLLHSNVLTYVIPSTFLSLRDI--LVFNFSSNS 344
+ LR L L+ N L+ +P+ L R + FNF+ N+
Sbjct: 490 TSLRILNLNGNSLSGRVPAA-LGGRLLHRASFNFTDNA 526
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 60.6 bits (147), Expect = 1e-09
Identities = 34/86 (39%), Positives = 46/86 (53%), Gaps = 1/86 (1%)
Query: 227 GRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGR 286
G IP +I L +L +++L N + G+IP SLG + L+ L L N GSIP+SL L
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491
Query: 287 LVELQFYDNKLFGSIPACIGKLSPLR 312
L L N L G +PA +G L
Sbjct: 492 LRILNLNGNSLSGRVPAALGGR-LLH 516
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 2e-09
Identities = 38/120 (31%), Positives = 60/120 (50%), Gaps = 5/120 (4%)
Query: 25 ALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGE 84
L ++N + G +P ++ + + L +I+LS N + G IP +G++TS L L N+ G
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGS 481
Query: 85 IPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRT 144
IP +G L +L L L N+ G + L L R +F +F NA I G+R
Sbjct: 482 IPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASF-----NFTDNAGLCGIPGLRA 536
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 57.9 bits (140), Expect = 8e-09
Identities = 29/71 (40%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN 247
R+L+ I+L+GN + G +P S+G++ TSLE + + Y +G IPE +G L +L ++L N
Sbjct: 442 RHLQSINLSGNSIRGNIPPSLGSI-TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGN 500
Query: 248 KLTGSIPISLG 258
L+G +P +LG
Sbjct: 501 SLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 54.6 bits (131), Expect = 5e-08
Identities = 82/269 (30%), Positives = 116/269 (43%), Gaps = 8/269 (2%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248
L +DL L S L+ R E+ L NL ++ L N
Sbjct: 68 RLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDLDNNN 127
Query: 249 LTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308
+T P+ L+ L L NK+E S+P L NL L L N L +P + L
Sbjct: 128 ITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNL 185
Query: 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN 368
S L NL L N ++ +P L + + S+NS+ L + NLK + G++LS N
Sbjct: 186 SNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK 243
Query: 369 LSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428
L D +P IG LSNL L+ N++ S SLG L +L LDLS NS S +P L
Sbjct: 244 LED-LPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPLIA-LL 299
Query: 429 LYLEYLNLSFNRLKGEIPSGESFANFSDN 457
L L L L+ + + ++N
Sbjct: 300 LLLLELLLNLLLTLKALELKLNSILLNNN 328
|
Length = 394 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 54.4 bits (131), Expect = 9e-08
Identities = 30/94 (31%), Positives = 50/94 (53%), Gaps = 5/94 (5%)
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSST 175
L L+ G IP+ I L + + NS G IP ++ ++ +L+ LDLS+N S
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482
Query: 176 SELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
E SL +L++++L GN L G +P+++G
Sbjct: 483 PE-----SLGQLTSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-07
Identities = 32/88 (36%), Positives = 50/88 (56%), Gaps = 1/88 (1%)
Query: 294 DNK-LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352
DN+ L G IP I KL L+++ L N + IP + S+ + V + S NS NGS+P
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGL 380
+G L + ++L+ N+LS +P +GG
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALGGR 513
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 2e-07
Identities = 31/107 (28%), Positives = 52/107 (48%), Gaps = 18/107 (16%)
Query: 49 AISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP 108
+ L + L G IP DI L +++ L N++ G IP +G++
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSI---------------- 465
Query: 109 RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI 155
++LE L L N+F+G+IP + + L IL + NS SG +P+ +
Sbjct: 466 --TSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAAL 510
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 52.5 bits (126), Expect = 4e-07
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 6/95 (6%)
Query: 140 LGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199
LG+ G IP+ I+ LR+LQ ++LS N + + SL + +L+V+DL+ N
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIP-----PSLGSITSLEVLDLSYNS 477
Query: 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234
+G +P S+G L TSL + + SGR+P +G
Sbjct: 478 FNGSIPESLGQL-TSLRILNLNGNSLSGRVPAALG 511
|
Length = 623 |
| >gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional | Back alignment and domain information |
|---|
Score = 49.8 bits (119), Expect = 3e-06
Identities = 29/100 (29%), Positives = 49/100 (49%), Gaps = 18/100 (18%)
Query: 73 ALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIF 132
L L N L G IP++I L +L+ + L N+ G IP +
Sbjct: 422 GLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRG------------------NIPPSLG 463
Query: 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
+ + L +L + NSF+G+IP ++ L +L+ L+L+ N L+
Sbjct: 464 SITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLS 503
|
Length = 623 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 1e-05
Identities = 21/60 (35%), Positives = 30/60 (50%)
Query: 382 NLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
NL L+ N+L + L +L+ LDLS N+ + P +F L L L+LS N L
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 40.2 bits (95), Expect = 8e-05
Identities = 22/56 (39%), Positives = 27/56 (48%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417
+DLS N L+ GL NL L+ N L PE+ L SL LDLS N+
Sbjct: 5 LDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Score = 40.3 bits (94), Expect = 0.002
Identities = 48/145 (33%), Positives = 67/145 (46%), Gaps = 13/145 (8%)
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN-----FDGPRHSNLER 115
IP IG L S L ++N I +P + NL NL+ L L N+ SNL
Sbjct: 131 IPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNN 190
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSST 175
L L N S +P I S L L + NS + S+++NL+NL L+LS N L
Sbjct: 191 LDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP 248
Query: 176 SELSFLSSLRNCRNLKVIDLTGNQL 200
+ N NL+ +DL+ NQ+
Sbjct: 249 ESIG------NLSNLETLDLSNNQI 267
|
Length = 394 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 36.4 bits (85), Expect = 0.002
Identities = 19/59 (32%), Positives = 27/59 (45%)
Query: 47 LIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF 105
L ++ LS+N+LT + L + + L L NNL P L +L L L NN
Sbjct: 2 LKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.6 bits (83), Expect = 0.003
Identities = 21/65 (32%), Positives = 30/65 (46%), Gaps = 5/65 (7%)
Query: 136 KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDL 195
L L + N + L NL+ LDLS N LTS + E + +L+ +DL
Sbjct: 1 NLKSLDLSNNRLTVIPDGAFKGLPNLKVLDLSGNNLTSISPE-----AFSGLPSLRSLDL 55
Query: 196 TGNQL 200
+GN L
Sbjct: 56 SGNNL 60
|
Length = 60 |
| >gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat | Back alignment and domain information |
|---|
Score = 35.2 bits (82), Expect = 0.004
Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 6/65 (9%)
Query: 160 NLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
NL+ LDLS N LT + + NLKV+DL+GN L I P + L SL +
Sbjct: 1 NLKSLDLSNNRLTVIPDG-----AFKGLPNLKVLDLSGNNLTSISPEAFSGL-PSLRSLD 54
Query: 220 MPYCR 224
+
Sbjct: 55 LSGNN 59
|
Length = 60 |
| >gnl|CDD|185268 PRK15370, PRK15370, E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Score = 39.3 bits (91), Expect = 0.004
Identities = 54/197 (27%), Positives = 86/197 (43%), Gaps = 36/197 (18%)
Query: 228 RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287
IP + + I M L IN++T +P L LQ L L+ NK+ +P++L L
Sbjct: 234 SIPATLPDTIQE--MELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLPE--EL 285
Query: 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347
L YDN + ++PA + S + +L + SN LT + + L+ + + SL
Sbjct: 286 RYLSVYDNSI-RTLPAHLP--SGITHLNVQSNSLTALPETLPPGLKTLEAGENALTSLPA 342
Query: 348 SLPLDIGNLKV---------------VVGIDLSRN---NLSDSIPTVIGGLSNLAFFSLA 389
SLP ++ L V + +D+SRN NL +++P L +
Sbjct: 343 SLPPELQVLDVSKNQITVLPETLPPTITTLDVSRNALTNLPENLPAA------LQIMQAS 396
Query: 390 YNKLQGSIPESLGDLRS 406
N L +PESL R
Sbjct: 397 RNNL-VRLPESLPHFRG 412
|
Length = 754 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| PLN00113 | 968 | leucine-rich repeat receptor-like protein kinase; | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG4194 | 873 | consensus Membrane glycoprotein LIG-1 [Signal tran | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0472 | 565 | consensus Leucine-rich repeat protein [Function un | 100.0 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 100.0 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0444 | 1255 | consensus Cytoskeletal regulator Flightless-I (con | 99.97 | |
| KOG0618 | 1081 | consensus Serine/threonine phosphatase 2C containi | 99.96 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.93 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 99.92 | |
| KOG4237 | 498 | consensus Extracellular matrix protein slit, conta | 99.9 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.82 | |
| PRK15387 | 788 | E3 ubiquitin-protein ligase SspH2; Provisional | 99.82 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.75 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.74 | |
| cd00116 | 319 | LRR_RI Leucine-rich repeats (LRRs), ribonuclease i | 99.74 | |
| PRK15370 | 754 | E3 ubiquitin-protein ligase SlrP; Provisional | 99.73 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.64 | |
| KOG0617 | 264 | consensus Ras suppressor protein (contains leucine | 99.64 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.26 | |
| KOG1909 | 382 | consensus Ran GTPase-activating protein [RNA proce | 99.26 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.25 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.21 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.2 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.18 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.16 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.14 | |
| PF14580 | 175 | LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ | 99.13 | |
| KOG1259 | 490 | consensus Nischarin, modulator of integrin alpha5 | 99.11 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.1 | |
| COG4886 | 394 | Leucine-rich repeat (LRR) protein [Function unknow | 99.08 | |
| KOG3207 | 505 | consensus Beta-tubulin folding cofactor E [Posttra | 99.05 | |
| KOG0532 | 722 | consensus Leucine-rich repeat (LRR) protein, conta | 99.05 | |
| PLN03150 | 623 | hypothetical protein; Provisional | 99.04 | |
| KOG4658 | 889 | consensus Apoptotic ATPase [Signal transduction me | 99.03 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.95 | |
| PF13855 | 61 | LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF | 98.91 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.74 | |
| KOG0531 | 414 | consensus Protein phosphatase 1, regulatory subuni | 98.7 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.58 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.56 | |
| KOG1859 | 1096 | consensus Leucine-rich repeat proteins [General fu | 98.43 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.39 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.38 | |
| KOG2120 | 419 | consensus SCF ubiquitin ligase, Skp2 component [Po | 98.38 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.33 | |
| COG5238 | 388 | RNA1 Ran GTPase-activating protein (RanGAP) involv | 98.29 | |
| KOG4579 | 177 | consensus Leucine-rich repeat (LRR) protein associ | 98.21 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.2 | |
| KOG2982 | 418 | consensus Uncharacterized conserved protein [Funct | 98.11 | |
| KOG1644 | 233 | consensus U2-associated snRNP A' protein [RNA proc | 98.03 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 98.0 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.89 | |
| PF12799 | 44 | LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_ | 97.86 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.86 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.76 | |
| PF13306 | 129 | LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_ | 97.74 | |
| PRK15386 | 426 | type III secretion protein GogB; Provisional | 97.74 | |
| KOG3665 | 699 | consensus ZYG-1-like serine/threonine protein kina | 97.72 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.72 | |
| KOG4341 | 483 | consensus F-box protein containing LRR [General fu | 97.55 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.11 | |
| KOG2739 | 260 | consensus Leucine-rich acidic nuclear protein [Cel | 97.04 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.74 | |
| KOG2123 | 388 | consensus Uncharacterized conserved protein [Funct | 96.72 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.47 | |
| KOG1947 | 482 | consensus Leucine rich repeat proteins, some prote | 96.25 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.82 | |
| PF00560 | 22 | LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le | 94.69 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 94.67 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 94.24 | |
| PF13504 | 17 | LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO | 92.81 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 92.14 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 91.38 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 91.38 | |
| KOG3864 | 221 | consensus Uncharacterized conserved protein [Funct | 90.02 | |
| KOG0473 | 326 | consensus Leucine-rich repeat protein [Function un | 89.86 | |
| smart00370 | 26 | LRR Leucine-rich repeats, outliers. | 89.24 | |
| smart00369 | 26 | LRR_TYP Leucine-rich repeats, typical (most popula | 89.24 | |
| KOG4308 | 478 | consensus LRR-containing protein [Function unknown | 88.04 | |
| PF13516 | 24 | LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI | 87.11 | |
| TIGR00864 | 2740 | PCC polycystin cation channel protein. Note: this | 86.69 |
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=463.69 Aligned_cols=473 Identities=33% Similarity=0.536 Sum_probs=300.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++|.+|.. .+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..++++++|++|++++|.
T Consensus 123 L~Ls~n~l~~~~p~~---~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~ 199 (968)
T PLN00113 123 LNLSNNNFTGSIPRG---SIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQ 199 (968)
T ss_pred EECcCCccccccCcc---ccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCC
Confidence 355666666555542 35556666666665555555555555666666666655555555555555666666665555
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
+.+..|..++++++|++|++++|.+.+. .+++|++|++++|.+.+..|..+.++++|++|++++|++.+..|..
T Consensus 200 l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 279 (968)
T PLN00113 200 LVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPS 279 (968)
T ss_pred CcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchh
Confidence 5555555555555555555555555432 3455555555555555555555555555555555555555555555
Q ss_pred hcCCCCCCEEeCCCCcCcCCCCCC-------------------cccccccCCCCCCEEEccCccCccCCChhhhhccccc
Q 045861 155 IANLRNLQWLDLSFNYLTSSTSEL-------------------SFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSL 215 (508)
Q Consensus 155 ~~~l~~L~~L~l~~n~~~~~~~~~-------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 215 (508)
+..+++|++|++++|.+....... .....+..+++|+.|++++|.+.+..|..+.... +|
T Consensus 280 l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~~~-~L 358 (968)
T PLN00113 280 IFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHN-NL 358 (968)
T ss_pred HhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChHHhCCC-CC
Confidence 555555555555555443311100 0012233444445555555444444444444443 45
Q ss_pred CeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc
Q 045861 216 EYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295 (508)
Q Consensus 216 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 295 (508)
+.|++++|.+.+.+|..+..+++|+.+++++|.+.+..|..+..+++|+.|++++|.+.+..|..+..+++|+.|++++|
T Consensus 359 ~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N 438 (968)
T PLN00113 359 TVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNN 438 (968)
T ss_pred cEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCCCCCEEECcCC
Confidence 55555555544444444444555555555555555445555555555555555555555555555555566666666666
Q ss_pred eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch
Q 045861 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375 (508)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 375 (508)
.+.+..+..+..+++|+.|++++|.+.+..+..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|.+.+..|.
T Consensus 439 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~ 517 (968)
T PLN00113 439 NLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPD 517 (968)
T ss_pred cccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCCh
Confidence 5555555555556666666666666655544433 346777888888888877888888888999999999999888888
Q ss_pred hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCC
Q 045861 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455 (508)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 455 (508)
.+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|..+..+++|+.+++++|++.+.+|....+..+.
T Consensus 518 ~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~~~~~~~~ 597 (968)
T PLN00113 518 ELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPSTGAFLAIN 597 (968)
T ss_pred HHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCcchhcccC
Confidence 88899999999999999998889889999999999999999998889889999999999999999999999888888888
Q ss_pred cccccCCCCCCCCC-CCCCCCCCC
Q 045861 456 DNSFMGNSFLCGSP-NLQVPPRKD 478 (508)
Q Consensus 456 ~l~l~~n~~~c~~~-~~~~~~~~~ 478 (508)
...+.+||.+|+-+ ....++|..
T Consensus 598 ~~~~~~n~~lc~~~~~~~~~~c~~ 621 (968)
T PLN00113 598 ASAVAGNIDLCGGDTTSGLPPCKR 621 (968)
T ss_pred hhhhcCCccccCCccccCCCCCcc
Confidence 88899999999743 233466753
|
|
| >PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=456.25 Aligned_cols=461 Identities=36% Similarity=0.542 Sum_probs=375.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|+|++|+++|.+|.++|..+++|++|++++|.+++.+|. ..+++|++|++++|.+++..|..++.+++|++|++++|.
T Consensus 98 L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~ 175 (968)
T PLN00113 98 INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNV 175 (968)
T ss_pred EECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCc
Confidence 588999999999999988999999999999999887775 468999999999999998899999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
+.+..|..+.++++|++|++++|.+.+. .+++|++|++++|.+.+..|..+.++++|++|++++|.+.+.+|..
T Consensus 176 l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~ 255 (968)
T PLN00113 176 LVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSS 255 (968)
T ss_pred ccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChh
Confidence 9889999999999999999999998754 6789999999999999999999999999999999999999999999
Q ss_pred hcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhh
Q 045861 155 IANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234 (508)
Q Consensus 155 ~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 234 (508)
++.+++|++|++++|.+.... ...+..+++|+.|++++|.+.+..|..+.... +|++|++.+|.+.+..|..+.
T Consensus 256 l~~l~~L~~L~L~~n~l~~~~-----p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~-~L~~L~l~~n~~~~~~~~~~~ 329 (968)
T PLN00113 256 LGNLKNLQYLFLYQNKLSGPI-----PPSIFSLQKLISLDLSDNSLSGEIPELVIQLQ-NLEILHLFSNNFTGKIPVALT 329 (968)
T ss_pred HhCCCCCCEEECcCCeeeccC-----chhHhhccCcCEEECcCCeeccCCChhHcCCC-CCcEEECCCCccCCcCChhHh
Confidence 999999999999999876521 13455666777777777776666666665554 666666666666666666666
Q ss_pred cCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCcc------------------------ccchhhhCCCCCcEE
Q 045861 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEG------------------------SIPDSLCNLGRLVEL 290 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~------------------------~~~~~~~~l~~L~~L 290 (508)
.+++|+.|++++|.+.+..|..++.+++|+.|++++|.+.+ ..|..+..+++|+.|
T Consensus 330 ~l~~L~~L~L~~n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L 409 (968)
T PLN00113 330 SLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRV 409 (968)
T ss_pred cCCCCCEEECcCCCCcCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEE
Confidence 66666666666666665555555555555555555555544 444445555666666
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCC
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS 370 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 370 (508)
++++|.+++..|..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+ ..++|+.|++++|++.
T Consensus 410 ~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~ 488 (968)
T PLN00113 410 RLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFS 488 (968)
T ss_pred ECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccC
Confidence 666666666666666666666666666666666666666667777777777777766666544 3578889999999999
Q ss_pred CccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-c
Q 045861 371 DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-E 449 (508)
Q Consensus 371 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~ 449 (508)
+..|..+..+++|+.|++++|.+++.+|..+..+++|++|++++|.+++.+|..+..+++|+.|++++|++++.+|.. .
T Consensus 489 ~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~ 568 (968)
T PLN00113 489 GAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLG 568 (968)
T ss_pred CccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHh
Confidence 889999999999999999999999999999999999999999999999999999999999999999999999999986 4
Q ss_pred ccCCCCcccccCCCCCCCCCC
Q 045861 450 SFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 450 ~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.+.+|+.+++++|+..+..|.
T Consensus 569 ~l~~L~~l~ls~N~l~~~~p~ 589 (968)
T PLN00113 569 NVESLVQVNISHNHLHGSLPS 589 (968)
T ss_pred cCcccCEEeccCCcceeeCCC
Confidence 578899999999998887774
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-43 Score=325.99 Aligned_cols=401 Identities=22% Similarity=0.253 Sum_probs=334.0
Q ss_pred CcEEEcccCCCCCCCCcccCCC--CCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCccc
Q 045861 47 LIAISLSHNQLTGLIPRDIGNL--TSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFS 124 (508)
Q Consensus 47 L~~L~L~~n~l~~~~~~~~~~l--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~ 124 (508)
-+.|+.+++.+.......+.+. ..-+.|++++|++..+.+..|.++++|+.+.+..|.++
T Consensus 54 ~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt------------------ 115 (873)
T KOG4194|consen 54 TRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT------------------ 115 (873)
T ss_pred ceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh------------------
Confidence 4567777777765544444443 23455888888888888888888888888888888776
Q ss_pred ccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCC
Q 045861 125 GTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL 204 (508)
Q Consensus 125 ~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~ 204 (508)
.+|.......+|+.|+|.+|.|+..-...++.++.|+.||++.|.++.++. ..|..-.++++|++++|.++...
T Consensus 116 -~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLSrN~is~i~~-----~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 116 -RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLSRNLISEIPK-----PSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred -hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhhhchhhcccC-----CCCCCCCCceEEeeccccccccc
Confidence 566666666677777777777776666667777777777777777766543 33444456777788777777777
Q ss_pred ChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCC
Q 045861 205 PSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNL 284 (508)
Q Consensus 205 ~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l 284 (508)
...|..+. +|..|.++.|+++...+..|.++++|+.|++..|.+....-..|.++++|+.|.+..|.+...-...|..+
T Consensus 190 ~~~F~~ln-sL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l 268 (873)
T KOG4194|consen 190 TGHFDSLN-SLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGL 268 (873)
T ss_pred cccccccc-hheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeee
Confidence 77777776 77788888888777777778889999999999999885546678999999999999999987777889999
Q ss_pred CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
.++++|+|..|++......++.++++|+.|++++|.|..+-...+..+++|++|+|+.|+++...+..+..++.|++|.|
T Consensus 269 ~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnL 348 (873)
T KOG4194|consen 269 EKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQLEELNL 348 (873)
T ss_pred cccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHhhhhcc
Confidence 99999999999999888889999999999999999999999999999999999999999999888999999999999999
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCcccccC---cccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcc
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI---PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~---~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 441 (508)
++|++......+|.++++|++|+|+.|.++..+ ...|.++++|+.|++.||++....-.+|.++++|++|++.+|.+
T Consensus 349 s~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~Nai 428 (873)
T KOG4194|consen 349 SHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAI 428 (873)
T ss_pred cccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcc
Confidence 999999777778999999999999999988544 36678899999999999999987778999999999999999999
Q ss_pred eecCCCccccCCCCcccccCCCCCCCCCCCC
Q 045861 442 KGEIPSGESFANFSDNSFMGNSFLCGSPNLQ 472 (508)
Q Consensus 442 ~~~~p~~~~~~~l~~l~l~~n~~~c~~~~~~ 472 (508)
.+.-|.+.....|+++.+..-.++|||.+.+
T Consensus 429 aSIq~nAFe~m~Lk~Lv~nSssflCDCql~W 459 (873)
T KOG4194|consen 429 ASIQPNAFEPMELKELVMNSSSFLCDCQLKW 459 (873)
T ss_pred eeecccccccchhhhhhhcccceEEeccHHH
Confidence 9777777666689999998888999998654
|
|
| >KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-39 Score=302.58 Aligned_cols=398 Identities=22% Similarity=0.217 Sum_probs=248.9
Q ss_pred CCCCC-cEEecCCCcCCCCCCcCCcCC--CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCC
Q 045861 19 HLPRL-QALDINNNHVTGPVPRNLWQC--QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNL 95 (508)
Q Consensus 19 ~~~~L-~~L~l~~~~~~~~~~~~~~~~--~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 95 (508)
.|+.. +.|+.+...+...-...+.+. +.-++|++++|++..+.+..|.++++|+.+++..|.++ .+|.......+|
T Consensus 49 ~c~c~~~lldcs~~~lea~~~~~l~g~lp~~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl 127 (873)
T KOG4194|consen 49 TCPCNTRLLDCSDRELEAIDKSRLKGFLPSQTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHL 127 (873)
T ss_pred cCCCCceeeecCccccccccccccCCcCccceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccce
Confidence 34433 457888888775433334433 44566999999999888888899999999999999888 778777777778
Q ss_pred CEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCC
Q 045861 96 EYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSST 175 (508)
Q Consensus 96 ~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~ 175 (508)
+.|+|.+|.|+.+ -.+.+..++.|+.|||+.|.|+......|..-.++++|++++|.++.+.
T Consensus 128 ~~L~L~~N~I~sv------------------~se~L~~l~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It~l~ 189 (873)
T KOG4194|consen 128 EKLDLRHNLISSV------------------TSEELSALPALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRITTLE 189 (873)
T ss_pred eEEeeeccccccc------------------cHHHHHhHhhhhhhhhhhchhhcccCCCCCCCCCceEEeeccccccccc
Confidence 8888888888753 2233444555555555555555333333444445555555555555443
Q ss_pred CCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCc
Q 045861 176 SELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPI 255 (508)
Q Consensus 176 ~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~ 255 (508)
. ..|.++.+|..|.++.|.++...+..|..++ +|+.|++..|++.-.--..|..+++|+.|.+..|++......
T Consensus 190 ~-----~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~-~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG 263 (873)
T KOG4194|consen 190 T-----GHFDSLNSLLTLKLSRNRITTLPQRSFKRLP-KLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDG 263 (873)
T ss_pred c-----ccccccchheeeecccCcccccCHHHhhhcc-hhhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCc
Confidence 2 3345555555555555555544444444444 555555555554433233455666666666666666655555
Q ss_pred cccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCC
Q 045861 256 SLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDI 335 (508)
Q Consensus 256 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L 335 (508)
.|..+.++++|++..|.+.......+.+++.|+.|+++.|.|...-+..+..+++|++|++++|+++...++.|..+..|
T Consensus 264 ~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~~L 343 (873)
T KOG4194|consen 264 AFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLSQL 343 (873)
T ss_pred ceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHHHh
Confidence 66666666666666666665555556666666666666666665555556666666666666666666666666666666
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCCCc---cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEEC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS---IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (508)
++|+|+.|.+......+|..+++|++|||++|.+... ....|.++++|+.|.+.+|++..+...+|.++..|+.|||
T Consensus 344 e~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL 423 (873)
T KOG4194|consen 344 EELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDL 423 (873)
T ss_pred hhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecC
Confidence 6666666666655555666666666666666665532 2234566667777777777666554566666667777777
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 413 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
.+|.|.+.-+++|..+ .|++|-+..-.+.
T Consensus 424 ~~NaiaSIq~nAFe~m-~Lk~Lv~nSssfl 452 (873)
T KOG4194|consen 424 GDNAIASIQPNAFEPM-ELKELVMNSSSFL 452 (873)
T ss_pred CCCcceeecccccccc-hhhhhhhcccceE
Confidence 7776666666666666 6666655544443
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-39 Score=288.57 Aligned_cols=444 Identities=28% Similarity=0.405 Sum_probs=277.8
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++|.+. .+..++ .++..+++|++++|.+. ..|.+++.+..++.++.++|++. .+|+.++.+.+|+.++.++|.
T Consensus 50 lils~N~l~-~l~~dl-~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~ 125 (565)
T KOG0472|consen 50 LILSHNDLE-VLREDL-KNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNE 125 (565)
T ss_pred hhhccCchh-hccHhh-hcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccc
Confidence 356677776 666666 67777777777777776 56666777777777777777776 556777777777777777777
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-----CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-----RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI 155 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 155 (508)
+. ..++.++++..++.++..+|++... .+.++..+++.+|.+. ..|....+++.|++++...|.+. .+|..+
T Consensus 126 ~~-el~~~i~~~~~l~dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~m~~L~~ld~~~N~L~-tlP~~l 202 (565)
T KOG0472|consen 126 LK-ELPDSIGRLLDLEDLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIAMKRLKHLDCNSNLLE-TLPPEL 202 (565)
T ss_pred ee-ecCchHHHHhhhhhhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHHHHHHHhcccchhhhh-cCChhh
Confidence 76 6666777777777777777776644 3445555666666655 34444444666666666666555 555556
Q ss_pred cCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhc
Q 045861 156 ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235 (508)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 235 (508)
+.+.+|+-|++..|++..++ .|.+|..|+++.+..|.+. ..|.......+++..|++.+|++. ..|+.+.-
T Consensus 203 g~l~~L~~LyL~~Nki~~lP-------ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklk-e~Pde~cl 273 (565)
T KOG0472|consen 203 GGLESLELLYLRRNKIRFLP-------EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICL 273 (565)
T ss_pred cchhhhHHHHhhhcccccCC-------CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeeccccccc-cCchHHHH
Confidence 66666666666666554433 3555666666666655554 444444433336666666666655 44555555
Q ss_pred CCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCC---CcEE-------EeeCceee----eeC
Q 045861 236 LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGR---LVEL-------QFYDNKLF----GSI 301 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L-------~L~~n~~~----~~~ 301 (508)
+.+|..||+++|.++ ..|..++++ .|+.|.+.+|.+... ...+-+.+. |++| .++...-+ ...
T Consensus 274 LrsL~rLDlSNN~is-~Lp~sLgnl-hL~~L~leGNPlrTi-Rr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~ 350 (565)
T KOG0472|consen 274 LRSLERLDLSNNDIS-SLPYSLGNL-HLKFLALEGNPLRTI-RREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTL 350 (565)
T ss_pred hhhhhhhcccCCccc-cCCcccccc-eeeehhhcCCchHHH-HHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCC
Confidence 666666666666665 345556665 566666666655311 000000000 0000 00000000 000
Q ss_pred C----cccCCCCCCCEEEcCCCcccccCCccccCcc--CCcEEEccCCccc-----------------------cccCcc
Q 045861 302 P----ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLR--DILVFNFSSNSLN-----------------------GSLPLD 352 (508)
Q Consensus 302 ~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~--~L~~L~L~~n~l~-----------------------~~~~~~ 352 (508)
+ .....+-+.++|++++-+++.++.+.|.... -.+.++++.|++. +.+|..
T Consensus 351 ~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn~isfv~~~ 430 (565)
T KOG0472|consen 351 PSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNNKISFVPLE 430 (565)
T ss_pred CCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcCccccchHH
Confidence 0 0011123455555555555544444433222 1344444444432 256666
Q ss_pred ccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCC
Q 045861 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLE 432 (508)
Q Consensus 353 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 432 (508)
+..+++|..|++++|.+. .+|..++.+..|+.|+++.|++. ..|.++..+..++.+-.++|++....+..+.++.+|.
T Consensus 431 l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~ 508 (565)
T KOG0472|consen 431 LSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLT 508 (565)
T ss_pred HHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcc
Confidence 778888999999999888 57877888888999999999887 7888887777888888888999977777799999999
Q ss_pred EEeCCCCcceecCCCccccCCCCcccccCCCCC
Q 045861 433 YLNLSFNRLKGEIPSGESFANFSDNSFMGNSFL 465 (508)
Q Consensus 433 ~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~ 465 (508)
+||+.+|.+....|..+.+.+++++.++|||+.
T Consensus 509 tLDL~nNdlq~IPp~LgnmtnL~hLeL~gNpfr 541 (565)
T KOG0472|consen 509 TLDLQNNDLQQIPPILGNMTNLRHLELDGNPFR 541 (565)
T ss_pred eeccCCCchhhCChhhccccceeEEEecCCccC
Confidence 999999999854445578999999999999875
|
|
| >KOG0472 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.2e-38 Score=281.00 Aligned_cols=425 Identities=25% Similarity=0.356 Sum_probs=334.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++.+|+++ ++|..+ ..+..++.++.++|++. .+|..+..+..|+.++.++|.+. ..|+.++.+..|..++..+|+
T Consensus 73 l~~~~n~l~-~lp~ai-g~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~-el~~~i~~~~~l~dl~~~~N~ 148 (565)
T KOG0472|consen 73 LNVHDNKLS-QLPAAI-GELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELK-ELPDSIGRLLDLEDLDATNNQ 148 (565)
T ss_pred EEeccchhh-hCCHHH-HHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhcccccee-ecCchHHHHhhhhhhhccccc
Confidence 356778888 788888 77888888888888887 77888888888888888888887 556788888888888888888
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-----CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-----RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI 155 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~ 155 (508)
+. ..|..+..+.++..+++.+|++... .+..|++|+...|-++ .+|..++.+.+|..|++..|++. .+| .|
T Consensus 149 i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nki~-~lP-ef 224 (565)
T KOG0472|consen 149 IS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNKIR-FLP-EF 224 (565)
T ss_pred cc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcccc-cCC-CC
Confidence 87 7788888888888888888887765 5677888888888877 88999999999999999999998 666 68
Q ss_pred cCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhc
Q 045861 156 ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235 (508)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 235 (508)
..+..|++++++.|.+..++. +....++++.+|++..|++. ..|+.++-.. +|++|++++|.++ .+|..+++
T Consensus 225 ~gcs~L~Elh~g~N~i~~lpa-----e~~~~L~~l~vLDLRdNklk-e~Pde~clLr-sL~rLDlSNN~is-~Lp~sLgn 296 (565)
T KOG0472|consen 225 PGCSLLKELHVGENQIEMLPA-----EHLKHLNSLLVLDLRDNKLK-EVPDEICLLR-SLERLDLSNNDIS-SLPYSLGN 296 (565)
T ss_pred CccHHHHHHHhcccHHHhhHH-----HHhcccccceeeeccccccc-cCchHHHHhh-hhhhhcccCCccc-cCCccccc
Confidence 889999999999998877665 34667888999999999988 6677777776 8999999999887 56677888
Q ss_pred CCCCcEEEcccCccccccCc-----------------------------------------cccCCCCCCcEEccCCcCc
Q 045861 236 LINLITMSLGINKLTGSIPI-----------------------------------------SLGKLQKLQGLYLYKNKLE 274 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~-----------------------------------------~l~~~~~L~~L~l~~n~l~ 274 (508)
+ .|+.|-+.+|.+..+-.+ ....+.+.+.|++++-+++
T Consensus 297 l-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt 375 (565)
T KOG0472|consen 297 L-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT 375 (565)
T ss_pred c-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc
Confidence 8 888898888865321000 0011224566666666666
Q ss_pred cccchhhhCCC--CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcc
Q 045861 275 GSIPDSLCNLG--RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 275 ~~~~~~~~~l~--~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
....+.|.... -+..+++++|++. .+|..+..+..+.+.-+..++..+..+..+..+++|+.|++++|.+. .+|..
T Consensus 376 ~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lkelvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e 453 (565)
T KOG0472|consen 376 LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELKELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEE 453 (565)
T ss_pred cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHHHHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchh
Confidence 33333333221 2677788888774 55655555555544444444444466777889999999999999998 78888
Q ss_pred ccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCC
Q 045861 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLE 432 (508)
Q Consensus 353 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 432 (508)
+..+-.|+.|+++.|+|. ..|..+..+..++.+-.++|++....+..+.+|.+|..||+.+|.+. .+|..++++.+|+
T Consensus 454 ~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~ 531 (565)
T KOG0472|consen 454 MGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLR 531 (565)
T ss_pred hhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCchh-hCChhhcccccee
Confidence 888889999999999998 78988888888888888999998666677999999999999999999 6777899999999
Q ss_pred EEeCCCCcceecCCCc
Q 045861 433 YLNLSFNRLKGEIPSG 448 (508)
Q Consensus 433 ~L~l~~n~l~~~~p~~ 448 (508)
+|+++||+|. .|..
T Consensus 532 hLeL~gNpfr--~Pr~ 545 (565)
T KOG0472|consen 532 HLELDGNPFR--QPRH 545 (565)
T ss_pred EEEecCCccC--CCHH
Confidence 9999999998 4544
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=296.78 Aligned_cols=436 Identities=26% Similarity=0.342 Sum_probs=310.6
Q ss_pred ecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc
Q 045861 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82 (508)
Q Consensus 3 l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 82 (508)
++.|-+- ..|-++-++.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|-+. ..|.....+.+|++++|.+|++.
T Consensus 28 ~~~N~~l-~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~-~vp~s~~~~~~l~~lnL~~n~l~ 104 (1081)
T KOG0618|consen 28 LRRNSLL-SRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIR-SVPSSCSNMRNLQYLNLKNNRLQ 104 (1081)
T ss_pred ccccccc-cCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhhHh-hCchhhhhhhcchhheeccchhh
Confidence 4444443 333333344445777777777776 66777777777777777777666 34566667777777777777666
Q ss_pred cCCchhccCCCCCCEeeCccccCCCC------------------------CCCCCCEEEccCCcccccCCccccCCCCCc
Q 045861 83 GEIPHEIGNLHNLEYLVLENNNFDGP------------------------RHSNLERLYLERNNFSGTIPSFIFNASKLS 138 (508)
Q Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~~~~~------------------------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~ 138 (508)
..|..+..+++|++|+++.|.+... +-..++.+++..+.+.+.++.++..+++
T Consensus 105 -~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~-- 181 (1081)
T KOG0618|consen 105 -SLPASISELKNLQYLDLSFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTH-- 181 (1081)
T ss_pred -cCchhHHhhhcccccccchhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhhe--
Confidence 6777777777777777777776544 2223556666666666666666665555
Q ss_pred EEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCee
Q 045861 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI 218 (508)
Q Consensus 139 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L 218 (508)
.++++.|.+.. ..+..+.+|+.+....|++..+.. .-++++.|+.+.|.++...+ ...+.+++++
T Consensus 182 ~ldLr~N~~~~---~dls~~~~l~~l~c~rn~ls~l~~---------~g~~l~~L~a~~n~l~~~~~---~p~p~nl~~~ 246 (1081)
T KOG0618|consen 182 QLDLRYNEMEV---LDLSNLANLEVLHCERNQLSELEI---------SGPSLTALYADHNPLTTLDV---HPVPLNLQYL 246 (1081)
T ss_pred eeecccchhhh---hhhhhccchhhhhhhhcccceEEe---------cCcchheeeeccCcceeecc---ccccccceee
Confidence 67777777651 224566777777777776655321 22668888888887773322 2334589999
Q ss_pred EccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceee
Q 045861 219 YMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLF 298 (508)
Q Consensus 219 ~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 298 (508)
+++++.+.+ +|.|+..+.+|+.++...|.++ ..|..+...++|+.|.+..|.+. .+|....++.+|++|++..|.+.
T Consensus 247 dis~n~l~~-lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~ 323 (1081)
T KOG0618|consen 247 DISHNNLSN-LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP 323 (1081)
T ss_pred ecchhhhhc-chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc
Confidence 999998884 5589999999999999999996 67778888899999999999988 66777788999999999999886
Q ss_pred eeCCcccCCCC-CCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhh
Q 045861 299 GSIPACIGKLS-PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI 377 (508)
Q Consensus 299 ~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~ 377 (508)
...+..+.... +|+.|..+.|.+.......=...+.|+.|++.+|.++......+.++.+|+.|+|++|++.......+
T Consensus 324 ~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~ 403 (1081)
T KOG0618|consen 324 SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKL 403 (1081)
T ss_pred ccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHH
Confidence 33333333333 36777777777765554444456778888888888887766677888888888888888885444557
Q ss_pred hcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCccee-cCCCccccCCCCc
Q 045861 378 GGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG-EIPSGESFANFSD 456 (508)
Q Consensus 378 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~ 456 (508)
.+++.|+.|+|+||+++ .+|..+..++.|++|...+|++. ..| .+..++.|+.+|++.|+++. .+|....-++|+.
T Consensus 404 ~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~p~Lky 480 (1081)
T KOG0618|consen 404 RKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPSPNLKY 480 (1081)
T ss_pred hchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCCcccce
Confidence 78888888888888888 67788888888888888888888 455 67788888888888888763 3444434477888
Q ss_pred ccccCCCCC
Q 045861 457 NSFMGNSFL 465 (508)
Q Consensus 457 l~l~~n~~~ 465 (508)
++++||+|.
T Consensus 481 LdlSGN~~l 489 (1081)
T KOG0618|consen 481 LDLSGNTRL 489 (1081)
T ss_pred eeccCCccc
Confidence 888888863
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.9e-33 Score=264.70 Aligned_cols=366 Identities=27% Similarity=0.417 Sum_probs=182.5
Q ss_pred CCCcEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEee
Q 045861 21 PRLQALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLV 99 (508)
Q Consensus 21 ~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 99 (508)
|-++-+|+++|.+. +.+|.....++.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..+..++.|+.++
T Consensus 7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~ 84 (1255)
T KOG0444|consen 7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI 84 (1255)
T ss_pred ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence 33444455555444 344444444455555555444444 33444555555555555555444 3333444444455554
Q ss_pred CccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCc
Q 045861 100 LENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179 (508)
Q Consensus 100 L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~ 179 (508)
+..|.+.. ..+|..+..+..|+.|+|+.|++. ..|..+...+++-.|++++|.|.+++.
T Consensus 85 ~R~N~LKn-----------------sGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn--- 143 (1255)
T KOG0444|consen 85 VRDNNLKN-----------------SGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPN--- 143 (1255)
T ss_pred hhcccccc-----------------CCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCc---
Confidence 44444431 134555555566666666666555 555555555566666666666555554
Q ss_pred ccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccc-cccCcccc
Q 045861 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT-GSIPISLG 258 (508)
Q Consensus 180 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~ 258 (508)
..|.+++.|-.|++++|.+. .+|..+..+. .|+.|.+++|.+...--..+..+..|++|.+++.+-+ ..+|.++.
T Consensus 144 --~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~-~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld 219 (1255)
T KOG0444|consen 144 --SLFINLTDLLFLDLSNNRLE-MLPPQIRRLS-MLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLD 219 (1255)
T ss_pred --hHHHhhHhHhhhccccchhh-hcCHHHHHHh-hhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchh
Confidence 22445555555555555544 2333333332 4444444444332111111223334444444443322 23444455
Q ss_pred CCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEE
Q 045861 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338 (508)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 338 (508)
.+.+|..++++.|.+. .+|+.+..+++|+.|+|++|+| +... .......+|++|
T Consensus 220 ~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~i------------------------teL~-~~~~~W~~lEtL 273 (1255)
T KOG0444|consen 220 DLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKI------------------------TELN-MTEGEWENLETL 273 (1255)
T ss_pred hhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCce------------------------eeee-ccHHHHhhhhhh
Confidence 5555555555555554 4444555555555555555554 4221 122223445555
Q ss_pred EccCCccccccCccccCCCCCcEEECCCCcCC-CccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS-DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 339 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
+++.|+++ ..|.++..++.|+.|.+.+|+++ +-+|+.++.+..|+.+..++|.+. .+|+++..++.|+.|.|+.|.+
T Consensus 274 NlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrL 351 (1255)
T KOG0444|consen 274 NLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRL 351 (1255)
T ss_pred ccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccccce
Confidence 55555555 55555555555555555555544 234555556666666666666654 5566666666666666666665
Q ss_pred cccCcccccCCCCCCEEeCCCCcce
Q 045861 418 SGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 418 ~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
. .+|+++.-++.|+.||++.|+-.
T Consensus 352 i-TLPeaIHlL~~l~vLDlreNpnL 375 (1255)
T KOG0444|consen 352 I-TLPEAIHLLPDLKVLDLRENPNL 375 (1255)
T ss_pred e-echhhhhhcCCcceeeccCCcCc
Confidence 5 45556666666666666666543
|
|
| >KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.97 E-value=2.6e-33 Score=264.94 Aligned_cols=368 Identities=27% Similarity=0.408 Sum_probs=289.1
Q ss_pred CCCCCcEEEcccCCCC-CCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCC
Q 045861 43 QCQELIAISLSHNQLT-GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERN 121 (508)
Q Consensus 43 ~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~ 121 (508)
.++-.|-.|+++|.++ +..|....++.+++-|.|..+++. .+|+.++.+.+|++|.+++|++.
T Consensus 5 VLpFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~--------------- 68 (1255)
T KOG0444|consen 5 VLPFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI--------------- 68 (1255)
T ss_pred ccceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH---------------
Confidence 4566778889999888 567888888999999999888887 88888999988888888888776
Q ss_pred cccccCCccccCCCCCcEEEccCccccc-ccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccC
Q 045861 122 NFSGTIPSFIFNASKLSILGIRTNSFSG-TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200 (508)
Q Consensus 122 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 200 (508)
.+...+..++.|+.+.++.|++.. -+|..+-.+..|..|++++|++..++.. +...+++-+|++++|.+
T Consensus 69 ----~vhGELs~Lp~LRsv~~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~EvP~~------LE~AKn~iVLNLS~N~I 138 (1255)
T KOG0444|consen 69 ----SVHGELSDLPRLRSVIVRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREVPTN------LEYAKNSIVLNLSYNNI 138 (1255)
T ss_pred ----hhhhhhccchhhHHHhhhccccccCCCCchhcccccceeeecchhhhhhcchh------hhhhcCcEEEEcccCcc
Confidence 566777888999999999988743 4666777889999999999998877643 55667788888888888
Q ss_pred ccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchh
Q 045861 201 HGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDS 280 (508)
Q Consensus 201 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~ 280 (508)
..+....+. ++..|-.|++++|++. .+|.-...+..|+.|.+++|.+.-.-...
T Consensus 139 etIPn~lfi-------------------------nLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQ 192 (1255)
T KOG0444|consen 139 ETIPNSLFI-------------------------NLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNPLNHFQLRQ 192 (1255)
T ss_pred ccCCchHHH-------------------------hhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCChhhHHHHhc
Confidence 744333333 3334444455555444 33444445555555555555543222223
Q ss_pred hhCCCCCcEEEeeCceee-eeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCC
Q 045861 281 LCNLGRLVELQFYDNKLF-GSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV 359 (508)
Q Consensus 281 ~~~l~~L~~L~L~~n~~~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 359 (508)
+..+++|+.|.+++.+-+ ..+|.++..+.+|..++++.|.+. ..|..+..+++|+.|+|++|+++ ........+.+|
T Consensus 193 LPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~l 270 (1255)
T KOG0444|consen 193 LPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENL 270 (1255)
T ss_pred CccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhh
Confidence 344556677777776443 457888888999999999999888 66778889999999999999999 666677888999
Q ss_pred cEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc-cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCC
Q 045861 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSF 438 (508)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~ 438 (508)
++|+++.|+++ ..|+++..++.|+.|++.+|+++- -+|.+++.+..|+++..++|.+. ..|+.+..|..|+.|.++.
T Consensus 271 EtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~ 348 (1255)
T KOG0444|consen 271 ETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDH 348 (1255)
T ss_pred hhhccccchhc-cchHHHhhhHHHHHHHhccCcccccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhcccc
Confidence 99999999999 899999999999999999999873 46889999999999999999998 8999999999999999999
Q ss_pred CcceecCCCc-cccCCCCcccccCCCCCCC
Q 045861 439 NRLKGEIPSG-ESFANFSDNSFMGNSFLCG 467 (508)
Q Consensus 439 n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~ 467 (508)
|++. ++|.+ ..++.+..++++.||.+--
T Consensus 349 NrLi-TLPeaIHlL~~l~vLDlreNpnLVM 377 (1255)
T KOG0444|consen 349 NRLI-TLPEAIHLLPDLKVLDLRENPNLVM 377 (1255)
T ss_pred ccee-echhhhhhcCCcceeeccCCcCccC
Confidence 9998 67776 5788999999999976543
|
|
| >KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.1e-32 Score=269.98 Aligned_cols=436 Identities=27% Similarity=0.341 Sum_probs=338.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+|.+..++. .||..++.+-- ++.|+++.|.+....-+...+.-+|+.|++++|.+. ..|..+..+.+|+.|+++.|.
T Consensus 3 vd~s~~~l~-~ip~~i~~~~~-~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~ 79 (1081)
T KOG0618|consen 3 VDASDEQLE-LIPEQILNNEA-LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNY 79 (1081)
T ss_pred cccccccCc-ccchhhccHHH-HHhhhccccccccCchHHhhheeeeEEeeccccccc-cCCchhhhHHHHhhcccchhh
Confidence 577888888 89999965544 999999999877433344556677999999999987 678889999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCCC-----CCCCCEEEccCCcccccCCccccCCCCCcEEE--------------
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPR-----HSNLERLYLERNNFSGTIPSFIFNASKLSILG-------------- 141 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~-------------- 141 (508)
+. ..|.+..++.+|+++.|.+|.+...+ +.+|+.|+++.|.+. ..|..+..+..+..+.
T Consensus 80 i~-~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ 157 (1081)
T KOG0618|consen 80 IR-SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQRLGQTS 157 (1081)
T ss_pred Hh-hCchhhhhhhcchhheeccchhhcCchhHHhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhhhcccc
Confidence 88 78889999999999999999988775 889999999999987 5555555444444444
Q ss_pred -----ccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccC
Q 045861 142 -----IRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLE 216 (508)
Q Consensus 142 -----l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 216 (508)
+..+.+.+.++..+..+.+ .+++.+|.+.. ..+..+.+|+.+..+.|.+.... ..-++++
T Consensus 158 ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~~--------~dls~~~~l~~l~c~rn~ls~l~-----~~g~~l~ 222 (1081)
T KOG0618|consen 158 IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEMEV--------LDLSNLANLEVLHCERNQLSELE-----ISGPSLT 222 (1081)
T ss_pred chhhhhhhhhcccchhcchhhhhe--eeecccchhhh--------hhhhhccchhhhhhhhcccceEE-----ecCcchh
Confidence 4444444444444444433 46666666542 23556666777777666655321 1123778
Q ss_pred eeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCce
Q 045861 217 YIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296 (508)
Q Consensus 217 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 296 (508)
.|+..+|.+....+ .....+|++++++.+.+. .+|.+++.+.+|+.+...+|.++ .++.......+|+.+.+..|.
T Consensus 223 ~L~a~~n~l~~~~~--~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~ne 298 (1081)
T KOG0618|consen 223 ALYADHNPLTTLDV--HPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNE 298 (1081)
T ss_pred eeeeccCcceeecc--ccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhh
Confidence 88888887763222 223457899999999988 45688999999999999999986 677777788889999888888
Q ss_pred eeeeCCcccCCCCCCCEEEcCCCcccccCCccccCcc-CCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch
Q 045861 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLR-DILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375 (508)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 375 (508)
+. -+|......++|++|++..|++....+..+.... ++..++.+.|++.......=..++.|+.|.+.+|.+++....
T Consensus 299 l~-yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p 377 (1081)
T KOG0618|consen 299 LE-YIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFP 377 (1081)
T ss_pred hh-hCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchh
Confidence 74 5667777889999999999998877665554444 378888888888743322334567889999999999998888
Q ss_pred hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCC
Q 045861 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455 (508)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 455 (508)
.+.+.++|+.|+|++|++.......+.++..|+.|+||||+++ .+|+++..++.|++|...+|++. ++|.....+.|+
T Consensus 378 ~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fPe~~~l~qL~ 455 (1081)
T KOG0618|consen 378 VLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFPELAQLPQLK 455 (1081)
T ss_pred hhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-echhhhhcCcce
Confidence 8999999999999999998444567788999999999999999 67799999999999999999998 899777888999
Q ss_pred cccccCCC
Q 045861 456 DNSFMGNS 463 (508)
Q Consensus 456 ~l~l~~n~ 463 (508)
.++++.|.
T Consensus 456 ~lDlS~N~ 463 (1081)
T KOG0618|consen 456 VLDLSCNN 463 (1081)
T ss_pred EEecccch
Confidence 99998883
|
|
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.93 E-value=2.9e-27 Score=212.69 Aligned_cols=295 Identities=23% Similarity=0.269 Sum_probs=201.4
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccC-Cc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN-NN 80 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n~ 80 (508)
|.++.+++ ++|.++ -+..+.++|..|+|+.+.+.+|..+++||.|||++|.|+.+.|++|.++++|-.|-+.+ |+
T Consensus 52 dCr~~GL~-eVP~~L---P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~Nk 127 (498)
T KOG4237|consen 52 DCRGKGLT-EVPANL---PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNK 127 (498)
T ss_pred EccCCCcc-cCcccC---CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCc
Confidence 56677777 778555 45677788888888877778888888888888888888888888888888877777766 77
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN 160 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 160 (508)
|+...-+.|+++..++.|.+.-|++. ....+.+..++++..|.+.+|.+...-...|..+..
T Consensus 128 I~~l~k~~F~gL~slqrLllNan~i~------------------Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~ 189 (498)
T KOG4237|consen 128 ITDLPKGAFGGLSSLQRLLLNANHIN------------------CIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAA 189 (498)
T ss_pred hhhhhhhHhhhHHHHHHHhcChhhhc------------------chhHHHHHHhhhcchhcccchhhhhhccccccchhc
Confidence 77555567888888888888777665 244566667777777777777776444446666777
Q ss_pred CCEEeCCCCcCcCCCCCCcc--------cccccCCCCCCEEEccCccCccCCChhhhhcccccCee--Ec-cCCcCcccC
Q 045861 161 LQWLDLSFNYLTSSTSELSF--------LSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI--YM-PYCRRSGRI 229 (508)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~--------~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L--~l-~~~~~~~~~ 229 (508)
++.+.+..|.+.+.... ++ ...++.........+.+..+..+.+..+.. .++.+ .+ +.+......
T Consensus 190 i~tlhlA~np~icdCnL-~wla~~~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c---~~esl~s~~~~~d~~d~~c 265 (498)
T KOG4237|consen 190 IKTLHLAQNPFICDCNL-PWLADDLAMNPIETSGARCVSPYRLYYKRINQEDARKFLC---SLESLPSRLSSEDFPDSIC 265 (498)
T ss_pred cchHhhhcCcccccccc-chhhhHHhhchhhcccceecchHHHHHHHhcccchhhhhh---hHHhHHHhhccccCcCCcC
Confidence 77777766664432110 00 011222222222233333333222222221 11111 11 111111222
Q ss_pred C-hhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCC
Q 045861 230 P-EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308 (508)
Q Consensus 230 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~ 308 (508)
| .-|..+++|+++++++|+++.+.+.+|.+...+++|++..|++.......|.++..|+.|+|++|+|+...|..|...
T Consensus 266 P~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~ 345 (498)
T KOG4237|consen 266 PAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTL 345 (498)
T ss_pred hHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeecCCeeEEEeccccccc
Confidence 2 347788999999999999998888899999999999999999887767788889999999999999988888888888
Q ss_pred CCCCEEEcCCCccc
Q 045861 309 SPLRNLLLHSNVLT 322 (508)
Q Consensus 309 ~~L~~L~l~~n~~~ 322 (508)
.+|.+|.+-.|++.
T Consensus 346 ~~l~~l~l~~Np~~ 359 (498)
T KOG4237|consen 346 FSLSTLNLLSNPFN 359 (498)
T ss_pred ceeeeeehccCccc
Confidence 89999988887653
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=1.2e-23 Score=230.75 Aligned_cols=287 Identities=23% Similarity=0.260 Sum_probs=137.7
Q ss_pred CCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcC-cCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcc
Q 045861 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL-TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212 (508)
Q Consensus 134 l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~-~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 212 (508)
..+|++|++.++++. .++..+..+++|+.++++++.. ..+ ..+..+++|+.|++++|.....+|..+..+.
T Consensus 610 ~~~L~~L~L~~s~l~-~L~~~~~~l~~Lk~L~Ls~~~~l~~i-------p~ls~l~~Le~L~L~~c~~L~~lp~si~~L~ 681 (1153)
T PLN03210 610 PENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEI-------PDLSMATNLETLKLSDCSSLVELPSSIQYLN 681 (1153)
T ss_pred ccCCcEEECcCcccc-ccccccccCCCCCEEECCCCCCcCcC-------CccccCCcccEEEecCCCCccccchhhhccC
Confidence 344445555444443 2333344444555555544321 111 1133344455555554443334444444443
Q ss_pred cccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
+|+.|++++|...+.+|..+ .+++|+.|++++|.....+|.. ..+|+.|++++|.+. .+|..+ .+++|++|.+
T Consensus 682 -~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l 754 (1153)
T PLN03210 682 -KLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELIL 754 (1153)
T ss_pred -CCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccc
Confidence 55555555544444444332 4455555555555433233321 234555555555544 233222 3445555555
Q ss_pred eCceeee-------eCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 293 YDNKLFG-------SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 293 ~~n~~~~-------~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
.++.... ..+..+...++|+.|++++|......|..+..+++|+.|++++|..-+.+|..+ .+++|+.|+++
T Consensus 755 ~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 755 CEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred cccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 4432110 001111223456666666665555555555666666666666654333444443 45566666666
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCc
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|.....+|.. .++|+.|++++|.++ .+|..+..+++|+.|++++|+-...+|..+..+++|+.+++++|.
T Consensus 834 ~c~~L~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 834 GCSRLRTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCcccccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 65443333322 245666666666665 455556666666666666654333445555556666666666665
|
syringae 6; Provisional |
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=99.92 E-value=4e-23 Score=226.68 Aligned_cols=341 Identities=20% Similarity=0.219 Sum_probs=197.5
Q ss_pred CchhhhhCCCCCcEEecCCCc------CCCCCCcCCcCC-CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccC
Q 045861 12 LPDDMCQHLPRLQALDINNNH------VTGPVPRNLWQC-QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGE 84 (508)
Q Consensus 12 l~~~~~~~~~~L~~L~l~~~~------~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 84 (508)
+....|+.+++|+.|.+..+. +...+|..|..+ .+|+.|++.++.+. .+|..| ...+|++|+++++++. .
T Consensus 549 i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f-~~~~L~~L~L~~s~l~-~ 625 (1153)
T PLN03210 549 IHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF-RPENLVKLQMQGSKLE-K 625 (1153)
T ss_pred ecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC-CccCCcEEECcCcccc-c
Confidence 344455666777766665442 122344444444 34666666666655 445444 4566666666666655 4
Q ss_pred CchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEE
Q 045861 85 IPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWL 164 (508)
Q Consensus 85 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L 164 (508)
++..+..+++|++|+++++.. ...+| .+..+++|+.|++++|.....+|..+..+++|+.|
T Consensus 626 L~~~~~~l~~Lk~L~Ls~~~~------------------l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L 686 (1153)
T PLN03210 626 LWDGVHSLTGLRNIDLRGSKN------------------LKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDL 686 (1153)
T ss_pred cccccccCCCCCEEECCCCCC------------------cCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEE
Confidence 555556666666666665431 11333 25556667777777665555666666667777777
Q ss_pred eCCCCc-CcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEE
Q 045861 165 DLSFNY-LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMS 243 (508)
Q Consensus 165 ~l~~n~-~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~ 243 (508)
++++|. +..++.. .++++|+.|++++|.....+|. ...+|++|++.++.+. .+|..+ .+++|++|.
T Consensus 687 ~L~~c~~L~~Lp~~-------i~l~sL~~L~Lsgc~~L~~~p~----~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~ 753 (1153)
T PLN03210 687 DMSRCENLEILPTG-------INLKSLYRLNLSGCSRLKSFPD----ISTNISWLDLDETAIE-EFPSNL-RLENLDELI 753 (1153)
T ss_pred eCCCCCCcCccCCc-------CCCCCCCEEeCCCCCCcccccc----ccCCcCeeecCCCccc-cccccc-ccccccccc
Confidence 776653 2222221 1456677777766654433332 2236667777666654 344332 456666666
Q ss_pred cccCcccc-------ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEc
Q 045861 244 LGINKLTG-------SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL 316 (508)
Q Consensus 244 l~~~~~~~-------~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 316 (508)
+.++.... ..+......++|+.|++++|.....+|..+..+++|+.|++++|...+.+|... .+++|+.|++
T Consensus 754 l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~L 832 (1153)
T PLN03210 754 LCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDL 832 (1153)
T ss_pred ccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEEC
Confidence 65533210 111112234567777777776655677777777777777777765444555544 5677777777
Q ss_pred CCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 317 HSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 317 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
++|......+. ...+|++|++++|.++ .+|..+..+++|+.|++++|.-...++.....+++|+.+++++|.
T Consensus 833 s~c~~L~~~p~---~~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 833 SGCSRLRTFPD---ISTNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred CCCCccccccc---cccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 77654433222 2356777777777776 566667777777777777754333455556667777777777774
|
syringae 6; Provisional |
| >KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.90 E-value=7e-26 Score=203.81 Aligned_cols=282 Identities=24% Similarity=0.250 Sum_probs=190.0
Q ss_pred EEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCcc-c
Q 045861 25 ALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLEN-N 103 (508)
Q Consensus 25 ~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~-n 103 (508)
.++.++..++ .+|..+ -+.-..++|..|+|+.+.+.+|+.+++||+|||++|+|..+.|++|.+++.+..|-+.+ |
T Consensus 50 ~VdCr~~GL~-eVP~~L--P~~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~N 126 (498)
T KOG4237|consen 50 IVDCRGKGLT-EVPANL--PPETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNN 126 (498)
T ss_pred eEEccCCCcc-cCcccC--CCcceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCC
Confidence 5667777777 666654 45677899999999999999999999999999999999999999999999999888877 7
Q ss_pred cCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccccc
Q 045861 104 NFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS 183 (508)
Q Consensus 104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 183 (508)
+|++ .-.+.|.++..++.|.+..|++.....++|..++++..|.+..|.+..+.. ..
T Consensus 127 kI~~------------------l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~-----~t 183 (498)
T KOG4237|consen 127 KITD------------------LPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLSLLSLYDNKIQSICK-----GT 183 (498)
T ss_pred chhh------------------hhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcchhcccchhhhhhcc-----cc
Confidence 6762 334678899999999999999998888999999999999999999887665 35
Q ss_pred ccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc-----------
Q 045861 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS----------- 252 (508)
Q Consensus 184 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~----------- 252 (508)
|..+..++.+.+..|.+...- +|+++.=. ....|..++.........+.+.++..+
T Consensus 184 f~~l~~i~tlhlA~np~icdC---------nL~wla~~----~a~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~es 250 (498)
T KOG4237|consen 184 FQGLAAIKTLHLAQNPFICDC---------NLPWLADD----LAMNPIETSGARCVSPYRLYYKRINQEDARKFLCSLES 250 (498)
T ss_pred ccchhccchHhhhcCcccccc---------ccchhhhH----HhhchhhcccceecchHHHHHHHhcccchhhhhhhHHh
Confidence 778888999988888743210 11111000 000111111111111111111111111
Q ss_pred ---------------cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 253 ---------------IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 253 ---------------~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
....|.++++|+.|++++|.++..-+.+|.++..+++|.|..|++...-...|..+..|+.|+++
T Consensus 251 l~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~N~l~~v~~~~f~~ls~L~tL~L~ 330 (498)
T KOG4237|consen 251 LPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTRNKLEFVSSGMFQGLSGLKTLSLY 330 (498)
T ss_pred HHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCcchHHHHHHHhhhccccceeeeec
Confidence 11235556666666666666665555666666666666666666544444455566666666666
Q ss_pred CCcccccCCccccCccCCcEEEccCCcc
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSL 345 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l 345 (508)
+|+|+...+..|..+.+|.+|+|-.|.+
T Consensus 331 ~N~it~~~~~aF~~~~~l~~l~l~~Np~ 358 (498)
T KOG4237|consen 331 DNQITTVAPGAFQTLFSLSTLNLLSNPF 358 (498)
T ss_pred CCeeEEEecccccccceeeeeehccCcc
Confidence 6666666666666666666666665554
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=9.2e-20 Score=186.28 Aligned_cols=254 Identities=27% Similarity=0.336 Sum_probs=121.5
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
+++.++++ ++|..+. ++|+.|++.+|.++ .+|. ..++|++|++++|+++.+ |.. .++|++|++++|.+
T Consensus 207 dLs~~~Lt-sLP~~l~---~~L~~L~L~~N~Lt-~LP~---lp~~Lk~LdLs~N~LtsL-P~l---p~sL~~L~Ls~N~L 274 (788)
T PRK15387 207 NVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PVL---PPGLLELSIFSNPL 274 (788)
T ss_pred EcCCCCCC-cCCcchh---cCCCEEEccCCcCC-CCCC---CCCCCcEEEecCCccCcc-cCc---ccccceeeccCCch
Confidence 45556665 5555441 35566666666655 2332 235566666666655532 321 24555666666555
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCC
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNL 161 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 161 (508)
. .+|.. ..+|+.|++++|.++.+ |.. .++|+.|++++|++.. +|.. ...|
T Consensus 275 ~-~Lp~l---p~~L~~L~Ls~N~Lt~L-------------------P~~---p~~L~~LdLS~N~L~~-Lp~l---p~~L 324 (788)
T PRK15387 275 T-HLPAL---PSGLCKLWIFGNQLTSL-------------------PVL---PPGLQELSVSDNQLAS-LPAL---PSEL 324 (788)
T ss_pred h-hhhhc---hhhcCEEECcCCccccc-------------------ccc---ccccceeECCCCcccc-CCCC---cccc
Confidence 4 33322 13455555555555433 221 2345555555555442 2221 1234
Q ss_pred CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcE
Q 045861 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLIT 241 (508)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 241 (508)
+.|++++|.+..++.. ..+|+.|++++|.++. +|. .+.+++.|++++|.+.. +|.. ..+|+.
T Consensus 325 ~~L~Ls~N~L~~LP~l---------p~~Lq~LdLS~N~Ls~-LP~----lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~ 386 (788)
T PRK15387 325 CKLWAYNNQLTSLPTL---------PSGLQELSVSDNQLAS-LPT----LPSELYKLWAYNNRLTS-LPAL---PSGLKE 386 (788)
T ss_pred cccccccCcccccccc---------ccccceEecCCCccCC-CCC----CCcccceehhhcccccc-Cccc---ccccce
Confidence 4445555544433210 0235555555555542 121 12245555555554442 3321 234555
Q ss_pred EEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcc
Q 045861 242 MSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVL 321 (508)
Q Consensus 242 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 321 (508)
|++++|.+.+ +|.. .++|+.|++++|.+.. +|.. ..+|+.|++++|+++ .+|..+..+++|+.|++++|++
T Consensus 387 LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~L 457 (788)
T PRK15387 387 LIVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPL 457 (788)
T ss_pred EEecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCC
Confidence 6666655552 2321 2455566666666552 3332 124555666666654 4555555666666666666666
Q ss_pred ccc
Q 045861 322 TYV 324 (508)
Q Consensus 322 ~~~ 324 (508)
.+.
T Consensus 458 s~~ 460 (788)
T PRK15387 458 SER 460 (788)
T ss_pred Cch
Confidence 544
|
|
| >PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional | Back alignment and domain information |
|---|
Probab=99.82 E-value=2.2e-19 Score=183.53 Aligned_cols=161 Identities=26% Similarity=0.286 Sum_probs=79.0
Q ss_pred CCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEc
Q 045861 261 QKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNF 340 (508)
Q Consensus 261 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 340 (508)
++|+.|++++|.+.+ +|.. ..+|+.|++++|.+.+ +|.. .++|+.|++++|++..... ...+|+.|++
T Consensus 302 ~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~~-LP~l---p~~Lq~LdLS~N~Ls~LP~----lp~~L~~L~L 369 (788)
T PRK15387 302 PGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLTS-LPTL---PSGLQELSVSDNQLASLPT----LPSELYKLWA 369 (788)
T ss_pred cccceeECCCCcccc-CCCC---cccccccccccCcccc-cccc---ccccceEecCCCccCCCCC----CCcccceehh
Confidence 345555555554442 2221 1234445555554432 2211 1345555555555553321 1234555555
Q ss_pred cCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccccc
Q 045861 341 SSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
++|++. .+|.. ..+|+.|++++|++.+ +|.. .++|+.|++++|.++ .+|.. ..+|+.|++++|+++ .
T Consensus 370 s~N~L~-~LP~l---~~~L~~LdLs~N~Lt~-LP~l---~s~L~~LdLS~N~Ls-sIP~l---~~~L~~L~Ls~NqLt-~ 436 (788)
T PRK15387 370 YNNRLT-SLPAL---PSGLKELIVSGNRLTS-LPVL---PSELKELMVSGNRLT-SLPML---PSGLLSLSVYRNQLT-R 436 (788)
T ss_pred hccccc-cCccc---ccccceEEecCCcccC-CCCc---ccCCCEEEccCCcCC-CCCcc---hhhhhhhhhccCccc-c
Confidence 555555 23322 2345666666666652 3322 245666666666665 34432 234556666666666 4
Q ss_pred CcccccCCCCCCEEeCCCCcceecCC
Q 045861 421 IPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 421 ~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
+|..+..+++|+.|++++|++++..|
T Consensus 437 LP~sl~~L~~L~~LdLs~N~Ls~~~~ 462 (788)
T PRK15387 437 LPESLIHLSSETTVNLEGNPLSERTL 462 (788)
T ss_pred cChHHhhccCCCeEECCCCCCCchHH
Confidence 55556666666666666666654433
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.2e-19 Score=171.86 Aligned_cols=209 Identities=24% Similarity=0.230 Sum_probs=120.1
Q ss_pred cccCCCCCCcEEccCCcCccccchhhhCCCC---CcEEEeeCceeee----eCCcccCCC-CCCCEEEcCCCccccc---
Q 045861 256 SLGKLQKLQGLYLYKNKLEGSIPDSLCNLGR---LVELQFYDNKLFG----SIPACIGKL-SPLRNLLLHSNVLTYV--- 324 (508)
Q Consensus 256 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~---L~~L~L~~n~~~~----~~~~~~~~~-~~L~~L~l~~n~~~~~--- 324 (508)
.+..+++|++|++++|.+.+..+..+..+.+ |++|++++|.+.. .+...+..+ ++|+.|++++|.++..
T Consensus 76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~ 155 (319)
T cd00116 76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCE 155 (319)
T ss_pred HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHH
Confidence 4445556666666666655444444433333 6666666666542 112233444 6677777777766522
Q ss_pred -CCccccCccCCcEEEccCCccccc----cCccccCCCCCcEEECCCCcCCCccc----hhhhcCCCCCEEECcCCcccc
Q 045861 325 -IPSTFLSLRDILVFNFSSNSLNGS----LPLDIGNLKVVVGIDLSRNNLSDSIP----TVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 325 -~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~l~~ 395 (508)
....+..+.+|++|++++|.+++. ++..+...++|+.|++++|.+.+... ..+..+++|++|++++|.+++
T Consensus 156 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~ 235 (319)
T cd00116 156 ALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTD 235 (319)
T ss_pred HHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCch
Confidence 222344556677777777776632 22334455677777887777764332 334566778888888887764
Q ss_pred cCccccc-----CCCCCCEEECCCCcccc----cCcccccCCCCCCEEeCCCCcceec----CCCc-ccc-CCCCccccc
Q 045861 396 SIPESLG-----DLRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLSFNRLKGE----IPSG-ESF-ANFSDNSFM 460 (508)
Q Consensus 396 ~~~~~~~-----~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~----~p~~-~~~-~~l~~l~l~ 460 (508)
.....+. ..+.|+.|++++|.++. .+.+.+..+++|+++++++|.+... +... ... ..++.+++.
T Consensus 236 ~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~ 315 (319)
T cd00116 236 AGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVK 315 (319)
T ss_pred HHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccC
Confidence 2222221 13678888888887762 2234455567788888888887622 1111 223 456677777
Q ss_pred CCCC
Q 045861 461 GNSF 464 (508)
Q Consensus 461 ~n~~ 464 (508)
+|||
T Consensus 316 ~~~~ 319 (319)
T cd00116 316 DDSF 319 (319)
T ss_pred CCCC
Confidence 7765
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=1.1e-17 Score=172.37 Aligned_cols=225 Identities=24% Similarity=0.421 Sum_probs=117.4
Q ss_pred CCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEc
Q 045861 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYL 268 (508)
Q Consensus 189 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 268 (508)
.++.|++++|.++. +|..+. .+|++|++++|.+. .+|..+. ..|+.|++++|.+. .+|..+. .+|+.|++
T Consensus 200 ~L~~L~Ls~N~Lts-LP~~l~---~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~L 269 (754)
T PRK15370 200 QITTLILDNNELKS-LPENLQ---GNIKTLYANSNQLT-SIPATLP--DTIQEMELSINRIT-ELPERLP--SALQSLDL 269 (754)
T ss_pred CCcEEEecCCCCCc-CChhhc---cCCCEEECCCCccc-cCChhhh--ccccEEECcCCccC-cCChhHh--CCCCEEEC
Confidence 34445555554442 222221 14555555554443 2332221 24555555555554 3333332 34556666
Q ss_pred cCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc
Q 045861 269 YKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 269 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
++|.+. .+|..+. ++|+.|++++|.+.. +|..+. ++|+.|++++|.+....... .++|++|++++|.+++
T Consensus 270 s~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~lp--~sL~~L~Ls~N~Lt~LP~~l---~~sL~~L~Ls~N~Lt~- 339 (754)
T PRK15370 270 FHNKIS-CLPENLP--EELRYLSVYDNSIRT-LPAHLP--SGITHLNVQSNSLTALPETL---PPGLKTLEAGENALTS- 339 (754)
T ss_pred cCCccC-ccccccC--CCCcEEECCCCcccc-Ccccch--hhHHHHHhcCCccccCCccc---cccceeccccCCcccc-
Confidence 666555 3333332 356666666665542 232221 35666666666665432211 2466666777776663
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccc---
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF--- 425 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l--- 425 (508)
+|..+ .++|+.|++++|++. .+|..+ .++|+.|++++|.++ .+|..+. ..|+.|++++|++. .+|+.+
T Consensus 340 LP~~l--~~sL~~L~Ls~N~L~-~LP~~l--p~~L~~LdLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~ 410 (754)
T PRK15370 340 LPASL--PPELQVLDVSKNQIT-VLPETL--PPTITTLDVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHF 410 (754)
T ss_pred CChhh--cCcccEEECCCCCCC-cCChhh--cCCcCEEECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHH
Confidence 44333 256777777777766 345433 256777777777776 4454443 35777777777776 334333
Q ss_pred -cCCCCCCEEeCCCCcce
Q 045861 426 -EKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 426 -~~l~~L~~L~l~~n~l~ 442 (508)
..++.+..+++.+|+++
T Consensus 411 ~~~~~~l~~L~L~~Npls 428 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPFS 428 (754)
T ss_pred hhcCCCccEEEeeCCCcc
Confidence 23466677777777765
|
|
| >cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily | Back alignment and domain information |
|---|
Probab=99.74 E-value=4.4e-19 Score=169.85 Aligned_cols=280 Identities=22% Similarity=0.239 Sum_probs=153.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCC----CCcCCcCCCCCcEEEcccCCCCC------CCCcccCCCCC
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGP----VPRNLWQCQELIAISLSHNQLTG------LIPRDIGNLTS 70 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~~~~L~~L~L~~n~l~~------~~~~~~~~l~~ 70 (508)
|+|+++.+++.--...|..+.+|++|+++++.++.. ++..+...+.+++++++++.+.. ..+..+..+++
T Consensus 3 l~L~~~~l~~~~~~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~ 82 (319)
T cd00116 3 LSLKGELLKTERATELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCG 82 (319)
T ss_pred cccccCcccccchHHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCc
Confidence 578888888555556668888999999999988532 34445667889999999887762 22345667889
Q ss_pred CCeEEccCCccccCCchhccCCCC---CCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCC-CCCcEEEccCcc
Q 045861 71 ARALLLGNNNLIGEIPHEIGNLHN---LEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNS 146 (508)
Q Consensus 71 L~~L~L~~n~l~~~~~~~~~~l~~---L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~ 146 (508)
|++|++++|.+....+..+..+.+ |++|++++|.+..... ..+...+..+ ++|++|++++|.
T Consensus 83 L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~--------------~~l~~~l~~~~~~L~~L~L~~n~ 148 (319)
T cd00116 83 LQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGL--------------RLLAKGLKDLPPALEKLVLGRNR 148 (319)
T ss_pred eeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHH--------------HHHHHHHHhCCCCceEEEcCCCc
Confidence 999999988887555555555544 8888888887653100 0111122223 444444444444
Q ss_pred ccc----ccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhh----hhcccccCee
Q 045861 147 FSG----TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSM----GNLSTSLEYI 218 (508)
Q Consensus 147 i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~----~~~~~~L~~L 218 (508)
+++ .++..+..+++|++|++++|.+.... .......+..+++|+.|++++|.+.+.....+ ... ++|++|
T Consensus 149 l~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~-~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L 226 (319)
T cd00116 149 LEGASCEALAKALRANRDLKELNLANNGIGDAG-IRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVL 226 (319)
T ss_pred CCchHHHHHHHHHHhCCCcCEEECcCCCCchHH-HHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEE
Confidence 431 11222333444555555444443200 00011122333445555555544432211111 111 245555
Q ss_pred EccCCcCcccCChhhh-----cCCCCcEEEcccCcccc----ccCccccCCCCCCcEEccCCcCccc----cchhhhCC-
Q 045861 219 YMPYCRRSGRIPEEIG-----NLINLITMSLGINKLTG----SIPISLGKLQKLQGLYLYKNKLEGS----IPDSLCNL- 284 (508)
Q Consensus 219 ~l~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l- 284 (508)
++++|.+.+.....+. ..+.|++|++++|.++. .+...+..+++|+++++++|.+.+. ....+...
T Consensus 227 ~ls~n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~ 306 (319)
T cd00116 227 NLGDNNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPG 306 (319)
T ss_pred ecCCCcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcC
Confidence 5555544431111111 13567777777776651 2233445557778888888877643 33344444
Q ss_pred CCCcEEEeeCce
Q 045861 285 GRLVELQFYDNK 296 (508)
Q Consensus 285 ~~L~~L~L~~n~ 296 (508)
+.|+++++.++.
T Consensus 307 ~~~~~~~~~~~~ 318 (319)
T cd00116 307 NELESLWVKDDS 318 (319)
T ss_pred CchhhcccCCCC
Confidence 567777776653
|
LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). |
| >PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional | Back alignment and domain information |
|---|
Probab=99.73 E-value=2e-17 Score=170.43 Aligned_cols=116 Identities=22% Similarity=0.340 Sum_probs=64.2
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeC
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVL 100 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 100 (508)
.+.+.|+++++.++ .+|..+ .++|+.|++++|+++. +|..+. .+|++|++++|++. .+|..+. .+|+.|++
T Consensus 178 ~~~~~L~L~~~~Lt-sLP~~I--p~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L 248 (754)
T PRK15370 178 NNKTELRLKILGLT-TIPACI--PEQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL 248 (754)
T ss_pred cCceEEEeCCCCcC-cCCccc--ccCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence 35567777777776 455544 3567778888777773 444433 47788888877776 4554433 35667777
Q ss_pred ccccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccc
Q 045861 101 ENNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFS 148 (508)
Q Consensus 101 ~~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~ 148 (508)
++|.+..+ ...+|+.|++++|+++ .+|..+. ++|+.|++++|+++
T Consensus 249 s~N~L~~LP~~l~s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt 296 (754)
T PRK15370 249 SINRITELPERLPSALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR 296 (754)
T ss_pred cCCccCcCChhHhCCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc
Confidence 76666532 1123444444444443 2333222 24444444444444
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.5e-18 Score=137.00 Aligned_cols=153 Identities=31% Similarity=0.484 Sum_probs=114.2
Q ss_pred CCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEe
Q 045861 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYL 98 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 98 (508)
++.+.+.|.+++|+++ ..|..+..+.+|+.|++++|+++ .+|..+..++.|++|+++-|++. +.|..|+.++.|+.|
T Consensus 31 ~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levl 107 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVL 107 (264)
T ss_pred chhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhh
Confidence 5778889999999998 66777999999999999999998 56788999999999999999988 899999999999999
Q ss_pred eCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcC
Q 045861 99 VLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171 (508)
Q Consensus 99 ~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~ 171 (508)
|+.+|.+..- .+..|+.|++++|.+. .+|..++++++|+.|.+++|.+- .+|..++.+..|++|++.+|++
T Consensus 108 dltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl 185 (264)
T KOG0617|consen 108 DLTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRL 185 (264)
T ss_pred hccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhccccee
Confidence 9999987643 2334555555555554 55555666666666666665554 4555555555666666666655
Q ss_pred cCCCC
Q 045861 172 TSSTS 176 (508)
Q Consensus 172 ~~~~~ 176 (508)
+.++.
T Consensus 186 ~vlpp 190 (264)
T KOG0617|consen 186 TVLPP 190 (264)
T ss_pred eecCh
Confidence 55443
|
|
| >KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.64 E-value=2.7e-18 Score=137.59 Aligned_cols=177 Identities=27% Similarity=0.429 Sum_probs=118.4
Q ss_pred CCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEE
Q 045861 284 LGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGID 363 (508)
Q Consensus 284 l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 363 (508)
+..++.|.++.|+++ .+|..+..+.+|+.|++.+|+++ ..|..+..+++|+.|+++-|++. ..|..|+.++.|+.||
T Consensus 32 ~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levld 108 (264)
T KOG0617|consen 32 MSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLD 108 (264)
T ss_pred hhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhh
Confidence 344555555555554 44445555666666666666665 33445566666666666666666 6777777777777777
Q ss_pred CCCCcCCC-ccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 364 LSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 364 l~~n~l~~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+..|.+.+ ..|..|..+..|+-|++++|.+. .+|..++.+++|+.|.+.+|.+. ..|..++.+..|++|.+.+|+++
T Consensus 109 ltynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~ 186 (264)
T KOG0617|consen 109 LTYNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT 186 (264)
T ss_pred ccccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee
Confidence 77777663 35666777777888888888876 67777788888888888888877 56677777888888888888887
Q ss_pred ecCCCcc-cc---CCCCcccccCCCCCC
Q 045861 443 GEIPSGE-SF---ANFSDNSFMGNSFLC 466 (508)
Q Consensus 443 ~~~p~~~-~~---~~l~~l~l~~n~~~c 466 (508)
.+|.+. .+ .+-....+..|||.-
T Consensus 187 -vlppel~~l~l~~~k~v~r~E~NPwv~ 213 (264)
T KOG0617|consen 187 -VLPPELANLDLVGNKQVMRMEENPWVN 213 (264)
T ss_pred -ecChhhhhhhhhhhHHHHhhhhCCCCC
Confidence 444432 21 222345678888875
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=5.2e-13 Score=119.77 Aligned_cols=190 Identities=19% Similarity=0.172 Sum_probs=94.2
Q ss_pred hhhcCCCCcEEEcccCccccccCcc----ccCCCCCCcEEccCCcCccccchhh-------------hCCCCCcEEEeeC
Q 045861 232 EIGNLINLITMSLGINKLTGSIPIS----LGKLQKLQGLYLYKNKLEGSIPDSL-------------CNLGRLVELQFYD 294 (508)
Q Consensus 232 ~l~~l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~L~L~~ 294 (508)
.+..++.|+++++++|.+....+.. +.++..|++|++.+|.+...-...+ ..-++|+++...+
T Consensus 87 aL~~~~~L~~ldLSDNA~G~~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~r 166 (382)
T KOG1909|consen 87 ALLGCPKLQKLDLSDNAFGPKGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGR 166 (382)
T ss_pred HHhcCCceeEeeccccccCccchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeec
Confidence 4566778999999999886443333 3557888888888888764322222 1224455555555
Q ss_pred ceeeee----CCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCC
Q 045861 295 NKLFGS----IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS 370 (508)
Q Consensus 295 n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 370 (508)
|.+... +...|...+.|+.+.+++|.|...-.. .....+..+++|+.||+.+|-++
T Consensus 167 Nrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~--------------------al~eal~~~~~LevLdl~DNtft 226 (382)
T KOG1909|consen 167 NRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVT--------------------ALAEALEHCPHLEVLDLRDNTFT 226 (382)
T ss_pred cccccccHHHHHHHHHhccccceEEEecccccCchhH--------------------HHHHHHHhCCcceeeecccchhh
Confidence 544211 112233344455555554444321110 11223344455555555555444
Q ss_pred Cc----cchhhhcCCCCCEEECcCCcccccCcccc-----cCCCCCCEEECCCCcccc----cCcccccCCCCCCEEeCC
Q 045861 371 DS----IPTVIGGLSNLAFFSLAYNKLQGSIPESL-----GDLRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLS 437 (508)
Q Consensus 371 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~ 437 (508)
.. ....+..+++|+.|++++|.+......+| ...++|++|.+.+|.++. .+..++...+.|+.|+|+
T Consensus 227 ~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLn 306 (382)
T KOG1909|consen 227 LEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLN 306 (382)
T ss_pred hHHHHHHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCC
Confidence 22 12233445555555555555543322222 224555566666655543 122233345556666666
Q ss_pred CCcc
Q 045861 438 FNRL 441 (508)
Q Consensus 438 ~n~l 441 (508)
+|++
T Consensus 307 gN~l 310 (382)
T KOG1909|consen 307 GNRL 310 (382)
T ss_pred cccc
Confidence 6655
|
|
| >KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.26 E-value=3.4e-13 Score=120.91 Aligned_cols=247 Identities=17% Similarity=0.206 Sum_probs=150.2
Q ss_pred ccCCCCCcEEEccCccccc----ccChhhcCCCCCCEEeCCCCcCcC----CCCC-CcccccccCCCCCCEEEccCccCc
Q 045861 131 IFNASKLSILGIRTNSFSG----TIPSTIANLRNLQWLDLSFNYLTS----STSE-LSFLSSLRNCRNLKVIDLTGNQLH 201 (508)
Q Consensus 131 ~~~l~~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~n~~~~----~~~~-~~~~~~l~~~~~L~~L~l~~~~~~ 201 (508)
+..+..++.|++++|.+.. .+...+.+.++|++.+++.--... ++.. ..+..++..+++|++++++.|.+.
T Consensus 26 ~~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G 105 (382)
T KOG1909|consen 26 LEPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFG 105 (382)
T ss_pred hcccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccC
Confidence 4455677888888887743 233445566677777765421111 1111 112244556666777777777665
Q ss_pred cCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccccc-------------CccccCCCCCCcEEc
Q 045861 202 GILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSI-------------PISLGKLQKLQGLYL 268 (508)
Q Consensus 202 ~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-------------~~~l~~~~~L~~L~l 268 (508)
-..+..+.. .+.++..|++|.+.+|.+.-.- ....+.-+.|+.+.+
T Consensus 106 ~~g~~~l~~---------------------ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~ 164 (382)
T KOG1909|consen 106 PKGIRGLEE---------------------LLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFIC 164 (382)
T ss_pred ccchHHHHH---------------------HHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEe
Confidence 444443333 3567889999999999875221 122345678999999
Q ss_pred cCCcCccc----cchhhhCCCCCcEEEeeCceeeeeC----CcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEc
Q 045861 269 YKNKLEGS----IPDSLCNLGRLVELQFYDNKLFGSI----PACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNF 340 (508)
Q Consensus 269 ~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~----~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 340 (508)
.+|.+... +...|...+.|+.+.+..|.|.... ...+..+++|+.|+++.|-++.....
T Consensus 165 ~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~------------- 231 (382)
T KOG1909|consen 165 GRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSV------------- 231 (382)
T ss_pred eccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHH-------------
Confidence 99998642 3346777899999999999874221 22344555555555555554422110
Q ss_pred cCCccccccCccccCCCCCcEEECCCCcCCCccchhh-----hcCCCCCEEECcCCccccc----CcccccCCCCCCEEE
Q 045861 341 SSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI-----GGLSNLAFFSLAYNKLQGS----IPESLGDLRSLEFLD 411 (508)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~-----~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~ 411 (508)
.+...+..++.|++|++++|.+......+| .+.|+|+.|.+.+|.|+.. +..+....+.|+.|+
T Consensus 232 -------~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLn 304 (382)
T KOG1909|consen 232 -------ALAKALSSWPHLRELNLGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLN 304 (382)
T ss_pred -------HHHHHhcccchheeecccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhc
Confidence 233455666677777777777665544433 2467788888888877632 223344567788888
Q ss_pred CCCCccc
Q 045861 412 LSNNSFS 418 (508)
Q Consensus 412 L~~n~~~ 418 (508)
|++|.+.
T Consensus 305 LngN~l~ 311 (382)
T KOG1909|consen 305 LNGNRLG 311 (382)
T ss_pred CCccccc
Confidence 8888873
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.25 E-value=1.6e-11 Score=126.39 Aligned_cols=118 Identities=39% Similarity=0.589 Sum_probs=106.5
Q ss_pred CCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCC
Q 045861 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437 (508)
Q Consensus 358 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 437 (508)
.++.|+|++|.+.+.+|..+..+++|+.|+|++|.+++.+|..+..+++|+.|+|++|++++.+|+.+..+++|+.|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 47889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcceecCCCccc--cCCCCcccccCCCCCCCCCCCCCCCCC
Q 045861 438 FNRLKGEIPSGES--FANFSDNSFMGNSFLCGSPNLQVPPRK 477 (508)
Q Consensus 438 ~n~l~~~~p~~~~--~~~l~~l~l~~n~~~c~~~~~~~~~~~ 477 (508)
+|++++.+|.... ...+..+++.+|+.+|++|.+ +.|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~l--~~C~ 538 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPGL--RACG 538 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCCC--CCCc
Confidence 9999999998632 345567899999999998864 5675
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.21 E-value=1.9e-11 Score=103.03 Aligned_cols=125 Identities=28% Similarity=0.373 Sum_probs=40.2
Q ss_pred CCCCCcEEecCCCcCCCCCCcCCc-CCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhc-cCCCCCC
Q 045861 19 HLPRLQALDINNNHVTGPVPRNLW-QCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLE 96 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~ 96 (508)
+..+++.|++++|.|+. +. .+. .+.+|+.|++++|.++.+ +.+..++.|++|++++|++.. +...+ ..+++|+
T Consensus 17 n~~~~~~L~L~~n~I~~-Ie-~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~-i~~~l~~~lp~L~ 91 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIST-IE-NLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISS-ISEGLDKNLPNLQ 91 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred ccccccccccccccccc-cc-chhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCc-cccchHHhCCcCC
Confidence 45567777777777763 32 343 466777777777777754 456677777777777777763 33333 3567777
Q ss_pred EeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccCh----hhcCCCCCCEEeC
Q 045861 97 YLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPS----TIANLRNLQWLDL 166 (508)
Q Consensus 97 ~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~----~~~~l~~L~~L~l 166 (508)
+|.+++|++... .....+..+++|++|++.+|+++.. +. .+..+|+|+.||-
T Consensus 92 ~L~L~~N~I~~l-----------------~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~ 147 (175)
T PF14580_consen 92 ELYLSNNKISDL-----------------NELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDG 147 (175)
T ss_dssp EEE-TTS---SC-----------------CCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETT
T ss_pred EEECcCCcCCCh-----------------HHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCC
Confidence 777777766521 1124455667777777777776532 21 2445666666663
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.4e-11 Score=129.68 Aligned_cols=155 Identities=24% Similarity=0.344 Sum_probs=118.9
Q ss_pred CCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCC--CCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCC
Q 045861 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQ--LTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLE 96 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~--l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 96 (508)
+....|.+.+.++.+. .++.. ..+++|++|-+.+|. +....++.|..++.|+.|||++|.-.+.+|+.++++.+|+
T Consensus 521 ~~~~~rr~s~~~~~~~-~~~~~-~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~Lr 598 (889)
T KOG4658|consen 521 SWNSVRRMSLMNNKIE-HIAGS-SENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLR 598 (889)
T ss_pred chhheeEEEEeccchh-hccCC-CCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhh
Confidence 4578889999998887 33433 356689999999986 5555555688899999999998876668999999999999
Q ss_pred EeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCC
Q 045861 97 YLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS 176 (508)
Q Consensus 97 ~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~ 176 (508)
+|+++++.+. .+|..+.++.+|.+|++..+.....++.....+++|++|.+...... .
T Consensus 599 yL~L~~t~I~-------------------~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~---~ 656 (889)
T KOG4658|consen 599 YLDLSDTGIS-------------------HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALS---N 656 (889)
T ss_pred cccccCCCcc-------------------ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccc---c
Confidence 9999999887 78999999999999999988766566777777999999998776522 1
Q ss_pred CCcccccccCCCCCCEEEccC
Q 045861 177 ELSFLSSLRNCRNLKVIDLTG 197 (508)
Q Consensus 177 ~~~~~~~l~~~~~L~~L~l~~ 197 (508)
+...+..+..+.+|+.+....
T Consensus 657 ~~~~l~el~~Le~L~~ls~~~ 677 (889)
T KOG4658|consen 657 DKLLLKELENLEHLENLSITI 677 (889)
T ss_pred chhhHHhhhcccchhhheeec
Confidence 222334455666666666543
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.18 E-value=5.8e-13 Score=126.64 Aligned_cols=167 Identities=29% Similarity=0.502 Sum_probs=99.4
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
|++.|+++ ++|..+ ..|-.|..+.++.|.+. .+|.++..+..|.+++|+.|+++ .+|..+..++ |+.|-+++|++
T Consensus 81 DlsrNR~~-elp~~~-~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-Lkvli~sNNkl 155 (722)
T KOG0532|consen 81 DLSRNRFS-ELPEEA-CAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-LKVLIVSNNKL 155 (722)
T ss_pred hccccccc-cCchHH-HHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-ceeEEEecCcc
Confidence 56677766 777666 55667777777777766 56666777777777777777666 5555555553 66777777766
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCC
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNL 161 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 161 (508)
+ .+|+.++....|..||.+.|.+. .+|..++++.+|+.|.++.|++. .+|..+..+ .|
T Consensus 156 ~-~lp~~ig~~~tl~~ld~s~nei~-------------------slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pL 213 (722)
T KOG0532|consen 156 T-SLPEEIGLLPTLAHLDVSKNEIQ-------------------SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PL 213 (722)
T ss_pred c-cCCcccccchhHHHhhhhhhhhh-------------------hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ce
Confidence 6 66666666666777777776665 44444555555555555555544 333334433 24
Q ss_pred CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCc
Q 045861 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLH 201 (508)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~ 201 (508)
..||++.|++..++. .|..|..|++|.|.+|.+.
T Consensus 214 i~lDfScNkis~iPv------~fr~m~~Lq~l~LenNPLq 247 (722)
T KOG0532|consen 214 IRLDFSCNKISYLPV------DFRKMRHLQVLQLENNPLQ 247 (722)
T ss_pred eeeecccCceeecch------hhhhhhhheeeeeccCCCC
Confidence 555555555544332 2444555555555555554
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.9e-12 Score=109.83 Aligned_cols=133 Identities=26% Similarity=0.238 Sum_probs=97.8
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 388 (508)
..|+++++++|.|+.+ +....-.+.++.|+++.|.+.. +. .++.+++|+.||+++|.++ ....+-..+-+.++|.|
T Consensus 284 q~LtelDLS~N~I~~i-DESvKL~Pkir~L~lS~N~i~~-v~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLITQI-DESVKLAPKLRRLILSQNRIRT-VQ-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchhhh-hhhhhhccceeEEeccccceee-eh-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 4678888888887733 4455667788888888888873 22 2677888888888888887 45555566778888888
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCc-ccccCCCCCCEEeCCCCcceecCCCc
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP-RSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
++|.+... .++..+-+|..||+++|+|..... ..++++|-|+.+.+.+|++. .+|+.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~-~~vdY 417 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA-GSVDY 417 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc-ccchH
Confidence 88888633 556777788888999988875322 46788888899999999887 45553
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.14 E-value=5.6e-12 Score=116.40 Aligned_cols=209 Identities=23% Similarity=0.268 Sum_probs=125.7
Q ss_pred cCCCCcEEEcccCccccccC-ccccCCCCCCcEEccCCcCcc--ccchhhhCCCCCcEEEeeCceeeeeCCcc-cCCCCC
Q 045861 235 NLINLITMSLGINKLTGSIP-ISLGKLQKLQGLYLYKNKLEG--SIPDSLCNLGRLVELQFYDNKLFGSIPAC-IGKLSP 310 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~-~~~~~~ 310 (508)
++.+|+.+.+.++.+....- .....+++++.|++++|-+.. .+.....++|+|+.|+++.|.+....... -..++.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~~ 198 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLSH 198 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhhh
Confidence 44556666666655441110 244556677777777766542 23344556777777777777653221111 124567
Q ss_pred CCEEEcCCCcccccC-CccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccc--hhhhcCCCCCEEE
Q 045861 311 LRNLLLHSNVLTYVI-PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP--TVIGGLSNLAFFS 387 (508)
Q Consensus 311 L~~L~l~~n~~~~~~-~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--~~~~~l~~L~~L~ 387 (508)
|+.|.+++|.++... ......+|+|+.|++.+|...........-+..|++|||++|++.+ .+ ...+.++.|..|+
T Consensus 199 lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~-~~~~~~~~~l~~L~~Ln 277 (505)
T KOG3207|consen 199 LKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLID-FDQGYKVGTLPGLNQLN 277 (505)
T ss_pred hheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccc-cccccccccccchhhhh
Confidence 777777777776332 1234556777777777774322333334456677888888887763 33 2356678888888
Q ss_pred CcCCccccc-Cccc-----ccCCCCCCEEECCCCcccccC-cccccCCCCCCEEeCCCCcceec
Q 045861 388 LAYNKLQGS-IPES-----LGDLRSLEFLDLSNNSFSGFI-PRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 388 L~~n~l~~~-~~~~-----~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
++.|.+... .|++ ...+++|+.|++..|++.+.. -..+..+++|+.|.+..|.+...
T Consensus 278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e 341 (505)
T KOG3207|consen 278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE 341 (505)
T ss_pred ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence 888877632 2222 345678888888888886421 13455667788888888888643
|
|
| >PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.5e-11 Score=101.40 Aligned_cols=102 Identities=25% Similarity=0.405 Sum_probs=43.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCccc-CCCCCCCeEEccCC
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDI-GNLTSARALLLGNN 79 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n 79 (508)
|+|+||+|+ .+.. +-..+.+|+.|++++|.|+. +. .+..++.|++|++++|+++.+. +.+ ..+++|++|++++|
T Consensus 24 L~L~~n~I~-~Ie~-L~~~l~~L~~L~Ls~N~I~~-l~-~l~~L~~L~~L~L~~N~I~~i~-~~l~~~lp~L~~L~L~~N 98 (175)
T PF14580_consen 24 LNLRGNQIS-TIEN-LGATLDKLEVLDLSNNQITK-LE-GLPGLPRLKTLDLSNNRISSIS-EGLDKNLPNLQELYLSNN 98 (175)
T ss_dssp -------------S---TT-TT--EEE-TTS--S---T-T----TT--EEE--SS---S-C-HHHHHH-TT--EEE-TTS
T ss_pred ccccccccc-cccc-hhhhhcCCCEEECCCCCCcc-cc-CccChhhhhhcccCCCCCCccc-cchHHhCCcCCEEECcCC
Confidence 689999999 6653 31368899999999999984 33 5888999999999999999653 334 46899999999999
Q ss_pred ccccC-CchhccCCCCCCEeeCccccCCC
Q 045861 80 NLIGE-IPHEIGNLHNLEYLVLENNNFDG 107 (508)
Q Consensus 80 ~l~~~-~~~~~~~l~~L~~L~L~~n~~~~ 107 (508)
++... .-..+..+++|++|++.+|+++.
T Consensus 99 ~I~~l~~l~~L~~l~~L~~L~L~~NPv~~ 127 (175)
T PF14580_consen 99 KISDLNELEPLSSLPKLRVLSLEGNPVCE 127 (175)
T ss_dssp ---SCCCCGGGGG-TT--EEE-TT-GGGG
T ss_pred cCCChHHhHHHHcCCCcceeeccCCcccc
Confidence 99752 23567889999999999998873
|
|
| >KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.11 E-value=2.1e-11 Score=107.26 Aligned_cols=201 Identities=16% Similarity=0.135 Sum_probs=132.7
Q ss_pred CccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCc-ccccCCccccCc
Q 045861 254 PISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNV-LTYVIPSTFLSL 332 (508)
Q Consensus 254 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~-~~~~~~~~~~~~ 332 (508)
|..+.-+.+|..+.++.+.-. -+......-|.|+++.+.+..+. ....+-.++.+.....+.-. .++..-......
T Consensus 207 ~f~l~~f~~l~~~~~s~~~~~-~i~~~~~~kptl~t~~v~~s~~~--~~~~l~pe~~~~D~~~~E~~t~~G~~~~~~dTW 283 (490)
T KOG1259|consen 207 SFNLNAFRNLKTLKFSALSTE-NIVDIELLKPTLQTICVHNTTIQ--DVPSLLPETILADPSGSEPSTSNGSALVSADTW 283 (490)
T ss_pred ccchHHhhhhheeeeeccchh-heeceeecCchhheeeeeccccc--ccccccchhhhcCccCCCCCccCCceEEecchH
Confidence 333444556666666666543 12222333456777766655442 11111112222222221111 111111223345
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEEC
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (508)
+.|+++||++|.++ .+...+.-.+.++.|++++|.+... . .++.+++|+.|+|++|.++ .+.++=..+-+++.|.|
T Consensus 284 q~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v-~-nLa~L~~L~~LDLS~N~Ls-~~~Gwh~KLGNIKtL~L 359 (490)
T KOG1259|consen 284 QELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV-Q-NLAELPQLQLLDLSGNLLA-ECVGWHLKLGNIKTLKL 359 (490)
T ss_pred hhhhhccccccchh-hhhhhhhhccceeEEeccccceeee-h-hhhhcccceEeecccchhH-hhhhhHhhhcCEeeeeh
Confidence 67999999999998 6777788899999999999999843 2 3888999999999999998 44444456789999999
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCCcceecCCC---ccccCCCCcccccCCCC
Q 045861 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS---GESFANFSDNSFMGNSF 464 (508)
Q Consensus 413 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~---~~~~~~l~~l~l~~n~~ 464 (508)
++|.+.+. ..+..+-+|..||+++|++. .+.. .+.++-|+.+.+.+||.
T Consensus 360 a~N~iE~L--SGL~KLYSLvnLDl~~N~Ie-~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 360 AQNKIETL--SGLRKLYSLVNLDLSSNQIE-ELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhhhHhhh--hhhHhhhhheeccccccchh-hHHHhcccccccHHHHHhhcCCCc
Confidence 99999865 46788899999999999987 3333 34566678899999984
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.10 E-value=1.1e-10 Score=115.15 Aligned_cols=181 Identities=38% Similarity=0.531 Sum_probs=90.9
Q ss_pred hcCCCCcEEEcccCccccccCccccCCC-CCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 234 GNLINLITMSLGINKLTGSIPISLGKLQ-KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 234 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
.....++.+++.++.++ .++....... +|+.|++++|.+. .++.....+++|+.|++++|++. .++......+.|+
T Consensus 113 ~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~ 189 (394)
T COG4886 113 LELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLS-DLPKLLSNLSNLN 189 (394)
T ss_pred hcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhh-hhhhhhhhhhhhh
Confidence 34455666666666666 3343444442 6666666666665 33344555666666666666654 3333333455566
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
.|++++|.+..+.. .......|+++.+++|.+. ..+..+..+..+..+.+.+|++. ..+..++.++++++|++++|.
T Consensus 190 ~L~ls~N~i~~l~~-~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~ 266 (394)
T COG4886 190 NLDLSGNKISDLPP-EIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQ 266 (394)
T ss_pred heeccCCccccCch-hhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceee-eccchhccccccceecccccc
Confidence 66666665553322 1123333555555555332 23334444555555555555554 223444455555555555555
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCc
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 422 (508)
++.. +. +..+.+++.|++++|.+....+
T Consensus 267 i~~i-~~-~~~~~~l~~L~~s~n~~~~~~~ 294 (394)
T COG4886 267 ISSI-SS-LGSLTNLRELDLSGNSLSNALP 294 (394)
T ss_pred cccc-cc-ccccCccCEEeccCccccccch
Confidence 5522 22 4445555555555555554333
|
|
| >COG4886 Leucine-rich repeat (LRR) protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.9e-10 Score=111.99 Aligned_cols=173 Identities=32% Similarity=0.432 Sum_probs=82.6
Q ss_pred CCCCcEEEcccCCCCCCCCcccCCCC-CCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCC-----CCCCCCEEE
Q 045861 44 CQELIAISLSHNQLTGLIPRDIGNLT-SARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP-----RHSNLERLY 117 (508)
Q Consensus 44 ~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-----~~~~L~~L~ 117 (508)
++.+..|++.++.++.+ +....... +|+.|++++|++. .+|..++.+++|+.|+++.|++..+ ..+.|+.|+
T Consensus 115 ~~~l~~L~l~~n~i~~i-~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~~~L~~L~ 192 (394)
T COG4886 115 LTNLTSLDLDNNNITDI-PPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKLLSNLSNLNNLD 192 (394)
T ss_pred ccceeEEecCCcccccC-ccccccchhhcccccccccchh-hhhhhhhccccccccccCCchhhhhhhhhhhhhhhhhee
Confidence 34455555555555422 22333332 5555555555544 3334445555555555555554433 234455555
Q ss_pred ccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccC
Q 045861 118 LERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTG 197 (508)
Q Consensus 118 l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~ 197 (508)
+++|++. .+|........|+++.+++|.+. ..+..+..+.++..+.+.+|++.... ..+..++.++.|++++
T Consensus 193 ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~~~~~~------~~~~~l~~l~~L~~s~ 264 (394)
T COG4886 193 LSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNKLEDLP------ESIGNLSNLETLDLSN 264 (394)
T ss_pred ccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCceeeecc------chhccccccceecccc
Confidence 5555554 44444334444556666555432 33344455555555555555543321 2344445556666666
Q ss_pred ccCccCCChhhhhcccccCeeEccCCcCcccC
Q 045861 198 NQLHGILPSSMGNLSTSLEYIYMPYCRRSGRI 229 (508)
Q Consensus 198 ~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~ 229 (508)
|.++.... +.... .+++++++++.+....
T Consensus 265 n~i~~i~~--~~~~~-~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 265 NQISSISS--LGSLT-NLRELDLSGNSLSNAL 293 (394)
T ss_pred cccccccc--ccccC-ccCEEeccCccccccc
Confidence 55553322 33332 5566666655554433
|
|
| >KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.05 E-value=2.3e-11 Score=112.37 Aligned_cols=209 Identities=19% Similarity=0.127 Sum_probs=90.4
Q ss_pred CCCCCCEEEccCCcccccCC-ccccCCCCCcEEEccCcccccc--cChhhcCCCCCCEEeCCCCcCcCCCCCCccccccc
Q 045861 109 RHSNLERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGT--IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLR 185 (508)
Q Consensus 109 ~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~ 185 (508)
.+.+|+.+.+.++.+..... .....+++++.|+|+.|-+... +......+++|+.|+++.|++....+.. .-.
T Consensus 119 n~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~----~~~ 194 (505)
T KOG3207|consen 119 NLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSN----TTL 194 (505)
T ss_pred hHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCcccc----chh
Confidence 34455555665555542211 2444555566666665544321 1222334555666666555554422211 011
Q ss_pred CCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCc
Q 045861 186 NCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQG 265 (508)
Q Consensus 186 ~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 265 (508)
.++.|+.|.++.|.++..... ..+..+|+|+.|.++.|...........-++.|+.
T Consensus 195 ~l~~lK~L~l~~CGls~k~V~------------------------~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~ 250 (505)
T KOG3207|consen 195 LLSHLKQLVLNSCGLSWKDVQ------------------------WILLTFPSLEVLYLEANEIILIKATSTKILQTLQE 250 (505)
T ss_pred hhhhhheEEeccCCCCHHHHH------------------------HHHHhCCcHHHhhhhcccccceecchhhhhhHHhh
Confidence 334444455554444422111 12234455555555555322122222333445555
Q ss_pred EEccCCcCccccc--hhhhCCCCCcEEEeeCceeeeeC-Ccc-----cCCCCCCCEEEcCCCcccccCC-ccccCccCCc
Q 045861 266 LYLYKNKLEGSIP--DSLCNLGRLVELQFYDNKLFGSI-PAC-----IGKLSPLRNLLLHSNVLTYVIP-STFLSLRDIL 336 (508)
Q Consensus 266 L~l~~n~l~~~~~--~~~~~l~~L~~L~L~~n~~~~~~-~~~-----~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~ 336 (508)
|+|++|.+.+ .+ .....+|.|+.|+++.|.+.... +.. ...+++|+.|+++.|++..... ..+..+++|+
T Consensus 251 LdLs~N~li~-~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk 329 (505)
T KOG3207|consen 251 LDLSNNNLID-FDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLK 329 (505)
T ss_pred ccccCCcccc-cccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhh
Confidence 5555555442 12 23344555555555555543221 111 1234555555555555532211 1223334444
Q ss_pred EEEccCCccc
Q 045861 337 VFNFSSNSLN 346 (508)
Q Consensus 337 ~L~L~~n~l~ 346 (508)
.|.+..|.+.
T Consensus 330 ~l~~~~n~ln 339 (505)
T KOG3207|consen 330 HLRITLNYLN 339 (505)
T ss_pred hhhccccccc
Confidence 4454455443
|
|
| >KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.05 E-value=5.7e-12 Score=120.02 Aligned_cols=195 Identities=27% Similarity=0.488 Sum_probs=128.1
Q ss_pred CCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEE
Q 045861 236 LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLL 315 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~ 315 (508)
+..-+..+++.|++. ++|..+..+..|+.+.++.|.+. .++...+.+..|++++++.|++. .+|..+..+ -|+.|.
T Consensus 74 ltdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~l-pLkvli 149 (722)
T KOG0532|consen 74 LTDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDL-PLKVLI 149 (722)
T ss_pred ccchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcC-cceeEE
Confidence 444556677777776 56666777777777777777776 66777777777777777777764 445444443 377777
Q ss_pred cCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc
Q 045861 316 LHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 316 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
+++|+++.. |..++....|..|+.+.|.+. .+|..+..+.+|+.|.+..|++. .+|..+.. -.|..||++.|+++
T Consensus 150 ~sNNkl~~l-p~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~-LpLi~lDfScNkis- 224 (722)
T KOG0532|consen 150 VSNNKLTSL-PEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCS-LPLIRLDFSCNKIS- 224 (722)
T ss_pred EecCccccC-CcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhC-CceeeeecccCcee-
Confidence 777777644 334446677777777777776 55666667777777777777776 44544553 34677777777776
Q ss_pred cCcccccCCCCCCEEECCCCcccccCccccc---CCCCCCEEeCCCCc
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFE---KLLYLEYLNLSFNR 440 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~---~l~~L~~L~l~~n~ 440 (508)
.+|-+|..|+.|++|-|.+|.+.+ .|..+. .+.-.++|+...|+
T Consensus 225 ~iPv~fr~m~~Lq~l~LenNPLqS-PPAqIC~kGkVHIFKyL~~qA~q 271 (722)
T KOG0532|consen 225 YLPVDFRKMRHLQVLQLENNPLQS-PPAQICEKGKVHIFKYLSTQACQ 271 (722)
T ss_pred ecchhhhhhhhheeeeeccCCCCC-ChHHHHhccceeeeeeecchhcc
Confidence 667777777777777777777773 333331 22345677777664
|
|
| >PLN03150 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.4e-10 Score=115.26 Aligned_cols=114 Identities=36% Similarity=0.565 Sum_probs=103.5
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECC
Q 045861 334 DILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413 (508)
Q Consensus 334 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (508)
.++.|+|++|.+.+.+|..+..+++|+.|++++|.+.+.+|..+..+++|+.|+|++|.+++.+|+.+..+++|+.|+|+
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 37889999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccccCcccccCC-CCCCEEeCCCCcceecCCC
Q 045861 414 NNSFSGFIPRSFEKL-LYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 414 ~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~ 447 (508)
+|++++.+|..+... .++..+++.+|+..+..|.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc~~p~ 533 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFTDNAGLCGIPG 533 (623)
T ss_pred CCcccccCChHHhhccccCceEEecCCccccCCCC
Confidence 999999999888764 4678899999987765554
|
|
| >KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.3e-10 Score=122.38 Aligned_cols=303 Identities=24% Similarity=0.232 Sum_probs=172.2
Q ss_pred cCCCCCCCCchhhhhCCCCCcEEecCCCc--CCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 4 ANNTLTGSLPDDMCQHLPRLQALDINNNH--VTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 4 ~~n~l~~~l~~~~~~~~~~L~~L~l~~~~--~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
.+|.+. .++... .+++|++|-+..|. +.......|..++.|++|||++|.--+.+|+.++.+.+||+|+++++.+
T Consensus 531 ~~~~~~-~~~~~~--~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I 607 (889)
T KOG4658|consen 531 MNNKIE-HIAGSS--ENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGI 607 (889)
T ss_pred eccchh-hccCCC--CCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCc
Confidence 344444 344333 46688888888875 4434444477788999999988765557888888899999999998888
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcc--cccCCccccCCCCCcEEEccCcccccccCh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNF--SGTIPSFIFNASKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~--~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 153 (508)
. .+|..+.+++.|.+|++..+..... .+++|++|.+..... +......+.++++|+.+....... .+..
T Consensus 608 ~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s~--~~~e 684 (889)
T KOG4658|consen 608 S-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSITISSV--LLLE 684 (889)
T ss_pred c-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheeecchh--HhHh
Confidence 7 8888888899999998887763222 378888888866542 222233445555666665543322 1111
Q ss_pred hhcCCCCCC----EEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhc-----ccccCeeEccCCc
Q 045861 154 TIANLRNLQ----WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNL-----STSLEYIYMPYCR 224 (508)
Q Consensus 154 ~~~~l~~L~----~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~-----~~~L~~L~l~~~~ 224 (508)
.+..+..|. .+.+.++... .....+..+.+|+.|.+.++.+........... .+++..+.+..+.
T Consensus 685 ~l~~~~~L~~~~~~l~~~~~~~~------~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~~~~~~~~f~~l~~~~~~~~~ 758 (889)
T KOG4658|consen 685 DLLGMTRLRSLLQSLSIEGCSKR------TLISSLGSLGNLEELSILDCGISEIVIEWEESLIVLLCFPNLSKVSILNCH 758 (889)
T ss_pred hhhhhHHHHHHhHhhhhcccccc------eeecccccccCcceEEEEcCCCchhhcccccccchhhhHHHHHHHHhhccc
Confidence 122333333 2222222111 122456677788888888877653322111100 1133333444443
Q ss_pred CcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccc-cchhhhCCCCCcEEEeeCceeee---e
Q 045861 225 RSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGS-IPDSLCNLGRLVELQFYDNKLFG---S 300 (508)
Q Consensus 225 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~---~ 300 (508)
.. ..+.+....++|+.+.+..+...+........+..+..+.+..+.+.+. .-....+++++..+.+..-.+.. .
T Consensus 759 ~~-r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~l~~l~~i~~~~l~~~~l~~~~ve 837 (889)
T KOG4658|consen 759 ML-RDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCSLGGLPQLYWLPLSFLKLEELIVE 837 (889)
T ss_pred cc-cccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeecCCCCceeEecccCccchhheehh
Confidence 32 2233445678888888888877655554555555555555555544433 22333444444444443322110 0
Q ss_pred CCcccCCCCCCCEEEcCCC
Q 045861 301 IPACIGKLSPLRNLLLHSN 319 (508)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n 319 (508)
-.+..+.+|.+..+.+.+|
T Consensus 838 ~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 838 ECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred cCcccccCccccccceecc
Confidence 1223466777777877775
|
|
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.9e-10 Score=77.58 Aligned_cols=61 Identities=44% Similarity=0.634 Sum_probs=46.1
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcc
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l 441 (508)
|+|++|++++|+++...+..|.++++|++|++++|.++...+++|.++++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 4677777777777765556777777888888888887777777777788888888877764
|
... |
| >PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A | Back alignment and domain information |
|---|
Probab=98.91 E-value=9.5e-10 Score=76.15 Aligned_cols=60 Identities=38% Similarity=0.555 Sum_probs=31.8
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|+|++|++++|.++...+..|.++++|++|++++|+++.+.+++|.++++|++|++++|+
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~ 60 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN 60 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence 345555555555554444455555555555555555554444555555555555555554
|
... |
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.74 E-value=9.7e-10 Score=108.45 Aligned_cols=237 Identities=25% Similarity=0.235 Sum_probs=150.8
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
.++.+.+..+.+.. +-..+..+.+|+.+++.+|.+... ...+..+++|++|++++|.+++. ..+..++.|+.|+++
T Consensus 73 ~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L~l~ 148 (414)
T KOG0531|consen 73 SLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKELNLS 148 (414)
T ss_pred hHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhheec
Confidence 55666666665543 222356677888888888888743 22266778888888888888744 335666678888888
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
+|.+.. ...+..++.|+.+++++|.+..... . ...+.+++.+.+.+|.+.... .+..+..+..+++..|.+...
T Consensus 149 ~N~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n~i~~~ 223 (414)
T KOG0531|consen 149 GNLISD--ISGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDNKISKL 223 (414)
T ss_pred cCcchh--ccCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccccceec
Confidence 888742 2334457888888888888876644 2 466777888888888776322 233444455557777777632
Q ss_pred cchhhhcCCC--CCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceec---CCC
Q 045861 373 IPTVIGGLSN--LAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGE---IPS 447 (508)
Q Consensus 373 ~~~~~~~l~~--L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~---~p~ 447 (508)
.+ +..+.. |+.+++++|++. ..+..+..+..+..+++.+|++... +.+...+.+..+....|.+... ...
T Consensus 224 ~~--l~~~~~~~L~~l~l~~n~i~-~~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 298 (414)
T KOG0531|consen 224 EG--LNELVMLHLRELYLSGNRIS-RSPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSEAISQE 298 (414)
T ss_pred cC--cccchhHHHHHHhcccCccc-cccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchhhhhcc
Confidence 21 222233 788888888887 4445667778888888888888754 3355556677777777776522 111
Q ss_pred --ccccCCCCcccccCCCC
Q 045861 448 --GESFANFSDNSFMGNSF 464 (508)
Q Consensus 448 --~~~~~~l~~l~l~~n~~ 464 (508)
......+..+.+.+||.
T Consensus 299 ~~~~~~~~~~~~~~~~~~~ 317 (414)
T KOG0531|consen 299 YITSAAPTLVTLTLELNPI 317 (414)
T ss_pred ccccccccccccccccCcc
Confidence 12334455566666653
|
|
| >KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.70 E-value=1.8e-09 Score=106.52 Aligned_cols=248 Identities=23% Similarity=0.240 Sum_probs=179.3
Q ss_pred cCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
..+..++.+.+..+.+.. ....+..+. +++.+++.++.+..... .+..+++|++|++++|.++... .+..++.|+
T Consensus 69 ~~l~~l~~l~l~~n~i~~-~~~~l~~~~-~l~~l~l~~n~i~~i~~-~l~~~~~L~~L~ls~N~I~~i~--~l~~l~~L~ 143 (414)
T KOG0531|consen 69 ESLTSLKELNLRQNLIAK-ILNHLSKLK-SLEALDLYDNKIEKIEN-LLSSLVNLQVLDLSFNKITKLE--GLSTLTLLK 143 (414)
T ss_pred HHhHhHHhhccchhhhhh-hhccccccc-ceeeeeccccchhhccc-chhhhhcchheecccccccccc--chhhccchh
Confidence 345666677777776664 122233343 89999999998875432 2678999999999999998543 466777899
Q ss_pred cEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCC-cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP-ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
.|++.+|.+... ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.... .+..+..+..+++..|
T Consensus 144 ~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~~i~--~~~~~~~l~~~~l~~n 218 (414)
T KOG0531|consen 144 ELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIREIE--GLDLLKKLVLLSLLDN 218 (414)
T ss_pred hheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchhccc--chHHHHHHHHhhcccc
Confidence 999999999743 345568899999999999864443 2 577899999999999987553 2334445555688888
Q ss_pred ccccccCccccCCC--CCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccccc-
Q 045861 344 SLNGSLPLDIGNLK--VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGF- 420 (508)
Q Consensus 344 ~l~~~~~~~~~~l~--~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~- 420 (508)
.+...-+. .... .|+.+++++|++.. .+..+..+..+..|++.+|++... ..+...+.+..+....+.+...
T Consensus 219 ~i~~~~~l--~~~~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 293 (414)
T KOG0531|consen 219 KISKLEGL--NELVMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNL--EGLERLPKLSELWLNDNKLALSE 293 (414)
T ss_pred cceeccCc--ccchhHHHHHHhcccCcccc-ccccccccccccccchhhcccccc--ccccccchHHHhccCcchhcchh
Confidence 88743322 2222 38899999999983 435677789999999999998744 4466778888999999987732
Q ss_pred --Cccc-ccCCCCCCEEeCCCCcceecCCC
Q 045861 421 --IPRS-FEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 421 --~~~~-l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
.... ....+.+..+++.+|+.....+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 323 (414)
T KOG0531|consen 294 AISQEYITSAAPTLVTLTLELNPIRKISSL 323 (414)
T ss_pred hhhccccccccccccccccccCcccccccc
Confidence 1121 45567899999999998765553
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.58 E-value=2.1e-09 Score=105.65 Aligned_cols=180 Identities=25% Similarity=0.353 Sum_probs=118.0
Q ss_pred chhhhCCCCCcEEEeeCceeeeeCCcccCCC-CCCCEEEcCCCccc---ccC---CccccC---ccCCcEEEccCCcccc
Q 045861 278 PDSLCNLGRLVELQFYDNKLFGSIPACIGKL-SPLRNLLLHSNVLT---YVI---PSTFLS---LRDILVFNFSSNSLNG 347 (508)
Q Consensus 278 ~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~-~~L~~L~l~~n~~~---~~~---~~~~~~---~~~L~~L~L~~n~l~~ 347 (508)
|-.+..+.+|+.|.+.+|.+... ..+..+ ..|+.|.-.+ ... .+. .+.+.+ .-.|.+.+.+.|.++
T Consensus 102 pi~ifpF~sLr~LElrg~~L~~~--~GL~~lr~qLe~LIC~~-Sl~Al~~v~ascggd~~ns~~Wn~L~~a~fsyN~L~- 177 (1096)
T KOG1859|consen 102 PISIFPFRSLRVLELRGCDLSTA--KGLQELRHQLEKLICHN-SLDALRHVFASCGGDISNSPVWNKLATASFSYNRLV- 177 (1096)
T ss_pred CceeccccceeeEEecCcchhhh--hhhHHHHHhhhhhhhhc-cHHHHHHHHHHhccccccchhhhhHhhhhcchhhHH-
Confidence 44556677888888888876421 111111 2233332221 111 000 011111 124677788888887
Q ss_pred ccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcccccCccccc
Q 045861 348 SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFSGFIPRSFE 426 (508)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l~ 426 (508)
.....++-++.++.|+|++|+++.. +.+..++.|+.|+|++|.++ .+|. .-.++ .|..|+++||-+++. ..+.
T Consensus 178 ~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc-~L~~L~lrnN~l~tL--~gie 251 (1096)
T KOG1859|consen 178 LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLR-HVPQLSMVGC-KLQLLNLRNNALTTL--RGIE 251 (1096)
T ss_pred hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhc-cccccchhhh-hheeeeecccHHHhh--hhHH
Confidence 6677788888999999999999843 26788999999999999988 3432 22233 499999999998865 4678
Q ss_pred CCCCCCEEeCCCCcceec--CCCccccCCCCcccccCCCCCCC
Q 045861 427 KLLYLEYLNLSFNRLKGE--IPSGESFANFSDNSFMGNSFLCG 467 (508)
Q Consensus 427 ~l~~L~~L~l~~n~l~~~--~p~~~~~~~l~~l~l~~n~~~c~ 467 (508)
++++|+.||+++|-+++. +.....+..|+.+.+.|||..|.
T Consensus 252 ~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~c~ 294 (1096)
T KOG1859|consen 252 NLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLCCA 294 (1096)
T ss_pred hhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccccC
Confidence 889999999999987632 22224556677889999998886
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.56 E-value=8.4e-10 Score=97.22 Aligned_cols=178 Identities=20% Similarity=0.232 Sum_probs=99.0
Q ss_pred CCCEEEccCCccccc-CCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCc-CcCCCCCCcccccccCCCC
Q 045861 112 NLERLYLERNNFSGT-IPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY-LTSSTSELSFLSSLRNCRN 189 (508)
Q Consensus 112 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~~~~ 189 (508)
.|++||++...++.. +...+..+.+|+.|.+.++++.+.+...+++..+|+.++++++. ++... .--.+.+|+.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~----~~ll~~scs~ 261 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENA----LQLLLSSCSR 261 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhH----HHHHHHhhhh
Confidence 466677766665522 33445567777777888777777777777777778888777653 22211 1123567777
Q ss_pred CCEEEccCccCccC-CChhhhhcccccCeeEccCCcCc---ccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCc
Q 045861 190 LKVIDLTGNQLHGI-LPSSMGNLSTSLEYIYMPYCRRS---GRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQG 265 (508)
Q Consensus 190 L~~L~l~~~~~~~~-~~~~~~~~~~~L~~L~l~~~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 265 (508)
|..|++++|..... ....+.+..++++.|+++++... ..+... ...+++|.+
T Consensus 262 L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL------------------------~~rcp~l~~ 317 (419)
T KOG2120|consen 262 LDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTL------------------------VRRCPNLVH 317 (419)
T ss_pred HhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHH------------------------HHhCCceee
Confidence 77777777755432 33344444556666666665321 011111 234555555
Q ss_pred EEccCCc-CccccchhhhCCCCCcEEEeeCceeeeeCCc---ccCCCCCCCEEEcCCC
Q 045861 266 LYLYKNK-LEGSIPDSLCNLGRLVELQFYDNKLFGSIPA---CIGKLSPLRNLLLHSN 319 (508)
Q Consensus 266 L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~---~~~~~~~L~~L~l~~n 319 (508)
|++++|. +.......|..++.|++|.++.|.. ..|. .+...|+|.+|++.++
T Consensus 318 LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl~yLdv~g~ 373 (419)
T KOG2120|consen 318 LDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSLVYLDVFGC 373 (419)
T ss_pred eccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcceEEEEeccc
Confidence 5555542 3333344455566666666666642 2222 2445566666666665
|
|
| >KOG1859 consensus Leucine-rich repeat proteins [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.43 E-value=1.5e-09 Score=106.74 Aligned_cols=126 Identities=27% Similarity=0.276 Sum_probs=88.8
Q ss_pred CCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchh-hhcCCCCCEEEC
Q 045861 310 PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTV-IGGLSNLAFFSL 388 (508)
Q Consensus 310 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~-~~~l~~L~~L~L 388 (508)
.|...+.+.|.+. ..+..+.-++.++.|+|+.|+++... .+..++.|+.|||+.|.+. .+|.. ..++. |+.|.+
T Consensus 165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~-~vp~l~~~gc~-L~~L~l 239 (1096)
T KOG1859|consen 165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLR-HVPQLSMVGCK-LQLLNL 239 (1096)
T ss_pred hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhc-cccccchhhhh-heeeee
Confidence 4556666667666 34456667778888888888887433 6778888888888888887 44432 34455 888888
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCc-ccccCCCCCCEEeCCCCcce
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP-RSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|.++.. ..+.++.+|+.||+++|-+.+... +-+..+..|+.|+|.||++-
T Consensus 240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~ 292 (1096)
T KOG1859|consen 240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC 292 (1096)
T ss_pred cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence 88888733 446778888888888888775322 23445667888888888874
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.39 E-value=1.8e-08 Score=78.51 Aligned_cols=133 Identities=19% Similarity=0.209 Sum_probs=99.4
Q ss_pred CCcEEEccCCccccccCc---cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEE
Q 045861 334 DILVFNFSSNSLNGSLPL---DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410 (508)
Q Consensus 334 ~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 410 (508)
.+..++|+.|++- -+++ .+.....|+..++++|.+....+..-..++..+.|++++|.++ .+|+.+..++.|+.|
T Consensus 28 E~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~l 105 (177)
T KOG4579|consen 28 ELHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSL 105 (177)
T ss_pred Hhhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhc
Confidence 4556677777654 2333 3445567777899999998544444456779999999999998 778779999999999
Q ss_pred ECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCC-CcccccCCCCCCCCCC
Q 045861 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF-SDNSFMGNSFLCGSPN 470 (508)
Q Consensus 411 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l-~~l~l~~n~~~c~~~~ 470 (508)
+++.|.+. ..|+.+..+.++.+|+..+|... .+|.....+++ .-+++.++||--+||.
T Consensus 106 Nl~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~ 164 (177)
T KOG4579|consen 106 NLRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKK 164 (177)
T ss_pred ccccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCcc
Confidence 99999999 66777777999999999999987 77766433333 3466788888877764
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.38 E-value=9.6e-08 Score=84.49 Aligned_cols=188 Identities=20% Similarity=0.157 Sum_probs=108.8
Q ss_pred CCCCCcEEccCCcCcc--ccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC-ccccCccCCc
Q 045861 260 LQKLQGLYLYKNKLEG--SIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLRDIL 336 (508)
Q Consensus 260 ~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~ 336 (508)
++.++.+++.+|.+.+ .+...+.++|+|+.|+++.|.+...+...-....+|+.|.+.+..+..... .....+|.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 4566677777776653 333445667777777777776643333322345677777777766653322 3345567777
Q ss_pred EEEccCCccccc--cCccccCC-CCCcEEECCCCcCCC--ccchhhhcCCCCCEEECcCCcccccC-cccccCCCCCCEE
Q 045861 337 VFNFSSNSLNGS--LPLDIGNL-KVVVGIDLSRNNLSD--SIPTVIGGLSNLAFFSLAYNKLQGSI-PESLGDLRSLEFL 410 (508)
Q Consensus 337 ~L~L~~n~l~~~--~~~~~~~l-~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 410 (508)
+++++.|.+... ........ +.++++....|.... ..-....-+|++..+.+..|++.... -+.+..++.+..|
T Consensus 150 elHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~L 229 (418)
T KOG2982|consen 150 ELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSCL 229 (418)
T ss_pred hhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchhh
Confidence 777777744321 11111222 245555555554331 00111234677788888888765432 2455566777788
Q ss_pred ECCCCcccccCc-ccccCCCCCCEEeCCCCcceecCCC
Q 045861 411 DLSNNSFSGFIP-RSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 411 ~L~~n~~~~~~~-~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
+|+.|++.+... +++.+.++|..|.++++++...+..
T Consensus 230 nL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~ 267 (418)
T KOG2982|consen 230 NLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPLRG 267 (418)
T ss_pred hhcccccccHHHHHHHcCCchhheeeccCCcccccccC
Confidence 888888875322 5667778888888888887654444
|
|
| >KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.38 E-value=1.3e-08 Score=89.97 Aligned_cols=180 Identities=21% Similarity=0.224 Sum_probs=117.0
Q ss_pred CCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCccc--CChhhhcCC
Q 045861 160 NLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGR--IPEEIGNLI 237 (508)
Q Consensus 160 ~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~--~~~~l~~l~ 237 (508)
.|+.+|++...++.. .....+..|.+|+.|.++++.+.+.+...++.-. .|+.++++.+.-... ....+.+|.
T Consensus 186 Rlq~lDLS~s~it~s----tl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~-~L~~lnlsm~sG~t~n~~~ll~~scs 260 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVS----TLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNS-NLVRLNLSMCSGFTENALQLLLSSCS 260 (419)
T ss_pred hhHHhhcchhheeHH----HHHHHHHHHHhhhhccccccccCcHHHHHHhccc-cceeeccccccccchhHHHHHHHhhh
Confidence 466677666554431 1113355666777777777766665555555554 677777776532221 223467788
Q ss_pred CCcEEEcccCccccccC-ccccC-CCCCCcEEccCCc--Ccc-ccchhhhCCCCCcEEEeeCc-eeeeeCCcccCCCCCC
Q 045861 238 NLITMSLGINKLTGSIP-ISLGK-LQKLQGLYLYKNK--LEG-SIPDSLCNLGRLVELQFYDN-KLFGSIPACIGKLSPL 311 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~-~~l~~-~~~L~~L~l~~n~--l~~-~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L 311 (508)
.|..|+++.|....... ..... -++|+.|+++++. +.. .+......+|+|..|++++| .+.......|.+++.|
T Consensus 261 ~L~~LNlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L 340 (419)
T KOG2120|consen 261 RLDELNLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYL 340 (419)
T ss_pred hHhhcCchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchh
Confidence 89999999887753322 11111 2678899999864 221 23334567999999999998 4555555667889999
Q ss_pred CEEEcCCCcccccCCc---cccCccCCcEEEccCCccc
Q 045861 312 RNLLLHSNVLTYVIPS---TFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~---~~~~~~~L~~L~L~~n~l~ 346 (508)
++|.++.|... .|. .+...++|.+|++-|+--.
T Consensus 341 ~~lSlsRCY~i--~p~~~~~l~s~psl~yLdv~g~vsd 376 (419)
T KOG2120|consen 341 QHLSLSRCYDI--IPETLLELNSKPSLVYLDVFGCVSD 376 (419)
T ss_pred eeeehhhhcCC--ChHHeeeeccCcceEEEEeccccCc
Confidence 99999988542 232 4667899999999987543
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=6.4e-08 Score=84.48 Aligned_cols=252 Identities=19% Similarity=0.137 Sum_probs=119.5
Q ss_pred cCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhc
Q 045861 156 ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235 (508)
Q Consensus 156 ~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 235 (508)
..+..+.++++++|.+..-... .....+.+-.+|+...++.- +++...+.+.. +|+ .+...+..
T Consensus 27 ~~~d~~~evdLSGNtigtEA~e-~l~~~ia~~~~L~vvnfsd~-ftgr~kde~~~---~L~-----------~Ll~aLlk 90 (388)
T COG5238 27 EMMDELVEVDLSGNTIGTEAME-ELCNVIANVRNLRVVNFSDA-FTGRDKDELYS---NLV-----------MLLKALLK 90 (388)
T ss_pred HhhcceeEEeccCCcccHHHHH-HHHHHHhhhcceeEeehhhh-hhcccHHHHHH---HHH-----------HHHHHHhc
Confidence 3466677777777766542111 00122334455555555432 22222221111 111 12235678
Q ss_pred CCCCcEEEcccCccccccCcc----ccCCCCCCcEEccCCcCccccchhh-------------hCCCCCcEEEeeCceee
Q 045861 236 LINLITMSLGINKLTGSIPIS----LGKLQKLQGLYLYKNKLEGSIPDSL-------------CNLGRLVELQFYDNKLF 298 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~----l~~~~~L~~L~l~~n~l~~~~~~~~-------------~~l~~L~~L~L~~n~~~ 298 (508)
||.|+.++++.|.+....|.. +..-+.|.+|.+++|.+.......+ ..-|.|+.+....|++-
T Consensus 91 cp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRle 170 (388)
T COG5238 91 CPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLE 170 (388)
T ss_pred CCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhc
Confidence 899999999999887665543 4556789999999988763322211 22355666666655542
Q ss_pred eeCC----cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc--
Q 045861 299 GSIP----ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS-- 372 (508)
Q Consensus 299 ~~~~----~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-- 372 (508)
.... ..+..-..|+.+.+.+|.|....-.. ..-..+..+.+|+.||+++|.++..
T Consensus 171 ngs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~-------------------L~~~gl~y~~~LevLDlqDNtft~~gS 231 (388)
T COG5238 171 NGSKELSAALLESHENLKEVKIQQNGIRPEGVTM-------------------LAFLGLFYSHSLEVLDLQDNTFTLEGS 231 (388)
T ss_pred cCcHHHHHHHHHhhcCceeEEeeecCcCcchhHH-------------------HHHHHHHHhCcceeeeccccchhhhhH
Confidence 1110 11122235555555555543210000 0001123344455555555544422
Q ss_pred --cchhhhcCCCCCEEECcCCcccccCcccc------cCCCCCCEEECCCCcccccCccc-----c--cCCCCCCEEeCC
Q 045861 373 --IPTVIGGLSNLAFFSLAYNKLQGSIPESL------GDLRSLEFLDLSNNSFSGFIPRS-----F--EKLLYLEYLNLS 437 (508)
Q Consensus 373 --~~~~~~~l~~L~~L~L~~n~l~~~~~~~~------~~l~~L~~L~L~~n~~~~~~~~~-----l--~~l~~L~~L~l~ 437 (508)
...++...+.|++|.+.+|-++......+ -..++|..|-..+|-+.+.+-.. + ..+|-|..+.+.
T Consensus 232 ~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~n 311 (388)
T COG5238 232 RYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERN 311 (388)
T ss_pred HHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHc
Confidence 12223344455555555555543222111 11355566666665543311111 1 234556666666
Q ss_pred CCcce
Q 045861 438 FNRLK 442 (508)
Q Consensus 438 ~n~l~ 442 (508)
||++.
T Consensus 312 gNr~~ 316 (388)
T COG5238 312 GNRIK 316 (388)
T ss_pred cCcch
Confidence 77665
|
|
| >COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3e-07 Score=80.36 Aligned_cols=165 Identities=18% Similarity=0.141 Sum_probs=114.2
Q ss_pred hhhhCCCCCcEEEeeCceeeeeCCc----ccCCCCCCCEEEcCCCcccccCCcc-------------ccCccCCcEEEcc
Q 045861 279 DSLCNLGRLVELQFYDNKLFGSIPA----CIGKLSPLRNLLLHSNVLTYVIPST-------------FLSLRDILVFNFS 341 (508)
Q Consensus 279 ~~~~~l~~L~~L~L~~n~~~~~~~~----~~~~~~~L~~L~l~~n~~~~~~~~~-------------~~~~~~L~~L~L~ 341 (508)
..+..||+|+.++++.|.+....+. .+++.+.|.+|.+++|.+....... ...-+.|+.+...
T Consensus 86 ~aLlkcp~l~~v~LSDNAfg~~~~e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicg 165 (388)
T COG5238 86 KALLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICG 165 (388)
T ss_pred HHHhcCCcceeeeccccccCcccchHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEec
Confidence 3456678888888888877544443 3456678888888888765432222 2345788999999
Q ss_pred CCcccccc----CccccCCCCCcEEECCCCcCCCccc-----hhhhcCCCCCEEECcCCccccc----CcccccCCCCCC
Q 045861 342 SNSLNGSL----PLDIGNLKVVVGIDLSRNNLSDSIP-----TVIGGLSNLAFFSLAYNKLQGS----IPESLGDLRSLE 408 (508)
Q Consensus 342 ~n~l~~~~----~~~~~~l~~L~~L~l~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~----~~~~~~~l~~L~ 408 (508)
.|++..-. ...+..-..|+++.+..|.|..... ..+..+.+|+.|++.+|.++.. ...++..++.|+
T Consensus 166 rNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lr 245 (388)
T COG5238 166 RNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLR 245 (388)
T ss_pred cchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhh
Confidence 88875221 1123344689999999998874422 2345789999999999998743 235566778899
Q ss_pred EEECCCCcccccCcccc------cCCCCCCEEeCCCCccee
Q 045861 409 FLDLSNNSFSGFIPRSF------EKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 409 ~L~L~~n~~~~~~~~~l------~~l~~L~~L~l~~n~l~~ 443 (508)
.|.+.+|-++.....++ ...|+|..|...+|...+
T Consensus 246 EL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~ 286 (388)
T COG5238 246 ELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRG 286 (388)
T ss_pred hccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcC
Confidence 99999999886444332 236889999999998754
|
|
| >KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.21 E-value=8.2e-08 Score=74.95 Aligned_cols=135 Identities=19% Similarity=0.220 Sum_probs=89.5
Q ss_pred CCEEEcCCCcccccCC--ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC
Q 045861 311 LRNLLLHSNVLTYVIP--STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388 (508)
Q Consensus 311 L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 388 (508)
+..+++++|++-.+.. ........|+..+|++|.+....+.....++.++.+++++|.+. .+|..+..++.|+.|++
T Consensus 29 ~h~ldLssc~lm~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lNl 107 (177)
T KOG4579|consen 29 LHFLDLSSCQLMYIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLNL 107 (177)
T ss_pred hhhcccccchhhHHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhccc
Confidence 4455666665543322 12334456777888888888544444556678888888888888 56777888888999999
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
+.|.+. ..|..+..+.++-.|+..+|... .+|..+-.-...-..++.++++.+..|..
T Consensus 108 ~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~k 165 (177)
T KOG4579|consen 108 RFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKK 165 (177)
T ss_pred ccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccc
Confidence 888887 66666666888888888888887 34433322233344455667776555543
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.20 E-value=2.8e-06 Score=71.19 Aligned_cols=101 Identities=27% Similarity=0.302 Sum_probs=53.9
Q ss_pred CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEE
Q 045861 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLY 117 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~ 117 (508)
.+...+||++|.+... +.|..++.|.+|.++.|.|+.+.|.--.-+++|+.|.+.+|.+... .+|+|++|.
T Consensus 42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 4445555555555432 3445555555555555555544444444445555555555554433 455555555
Q ss_pred ccCCccccc---CCccccCCCCCcEEEccCccc
Q 045861 118 LERNNFSGT---IPSFIFNASKLSILGIRTNSF 147 (508)
Q Consensus 118 l~~~~~~~~---~~~~~~~l~~L~~L~l~~~~i 147 (508)
+-+|.++.. -.-.+..+++|+.||+.+-..
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~ 152 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTR 152 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhhhH
Confidence 555554422 112356778888888876544
|
|
| >KOG2982 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.11 E-value=4.3e-07 Score=80.49 Aligned_cols=40 Identities=23% Similarity=0.316 Sum_probs=17.1
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccC
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~ 200 (508)
.+.++++++.+|.++.+.. ....+.+++.|+.|+++.|.+
T Consensus 70 ~~~v~elDL~~N~iSdWse---I~~ile~lP~l~~LNls~N~L 109 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSE---IGAILEQLPALTTLNLSCNSL 109 (418)
T ss_pred hhhhhhhhcccchhccHHH---HHHHHhcCccceEeeccCCcC
Confidence 3445555555554443211 012234444455555544443
|
|
| >KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.03 E-value=1e-05 Score=67.93 Aligned_cols=99 Identities=23% Similarity=0.202 Sum_probs=56.2
Q ss_pred CCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCccccc-CCccccCCCCCcEEE
Q 045861 69 TSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGT-IPSFIFNASKLSILG 141 (508)
Q Consensus 69 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~ 141 (508)
.+...+||++|.+. ..+.|..++.|.+|.++.|+|+.+ .+++|..|.+.+|++... ..+.+..+++|++|.
T Consensus 42 d~~d~iDLtdNdl~--~l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt 119 (233)
T KOG1644|consen 42 DQFDAIDLTDNDLR--KLDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT 119 (233)
T ss_pred cccceecccccchh--hcccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence 44556666666654 223456666666666666666655 345666666666665521 223455566666666
Q ss_pred ccCccccccc---ChhhcCCCCCCEEeCCCC
Q 045861 142 IRTNSFSGTI---PSTIANLRNLQWLDLSFN 169 (508)
Q Consensus 142 l~~~~i~~~~---~~~~~~l~~L~~L~l~~n 169 (508)
+-+|.+...- .-.+..+++|+.||+.+.
T Consensus 120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kV 150 (233)
T KOG1644|consen 120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKV 150 (233)
T ss_pred ecCCchhcccCceeEEEEecCcceEeehhhh
Confidence 6666654321 112445666666666554
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=98.00 E-value=5.6e-06 Score=52.26 Aligned_cols=36 Identities=42% Similarity=0.634 Sum_probs=16.0
Q ss_pred CCCEEECcCCcccccCcccccCCCCCCEEECCCCccc
Q 045861 382 NLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 382 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+|++|++++|+++ .+|..+..+++|+.|++++|+++
T Consensus 2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence 3444555555544 23333444555555555555444
|
... |
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.89 E-value=5.5e-05 Score=61.43 Aligned_cols=121 Identities=16% Similarity=0.202 Sum_probs=40.5
Q ss_pred cCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCC
Q 045861 305 IGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384 (508)
Q Consensus 305 ~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 384 (508)
|..+++|+.+.+.. .+..+....|..+.+|+.+.+.++ +.......+..++.++.+.+.+ .+.......|..+++|+
T Consensus 8 F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~ 84 (129)
T PF13306_consen 8 FYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLK 84 (129)
T ss_dssp TTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTEC
T ss_pred HhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccccc
Confidence 34444444444442 233344444444444444444442 3323333344444444444433 22222233444555555
Q ss_pred EEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCC
Q 045861 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYL 431 (508)
Q Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 431 (508)
.+.+..+ +.......|.+. .++.+.+.+ .+......+|.++++|
T Consensus 85 ~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 85 NIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp EEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred ccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 5555443 332334445554 556655554 3333444555555544
|
|
| >PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B | Back alignment and domain information |
|---|
Probab=97.86 E-value=8.5e-06 Score=51.42 Aligned_cols=37 Identities=46% Similarity=0.613 Sum_probs=31.4
Q ss_pred CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 405 RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 405 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|++|++++|++++ +|..+.++++|+.|++++|+++
T Consensus 1 ~~L~~L~l~~N~i~~-l~~~l~~l~~L~~L~l~~N~i~ 37 (44)
T PF12799_consen 1 KNLEELDLSNNQITD-LPPELSNLPNLETLNLSNNPIS 37 (44)
T ss_dssp TT-SEEEETSSS-SS-HGGHGTTCTTSSEEEETSSCCS
T ss_pred CcceEEEccCCCCcc-cCchHhCCCCCCEEEecCCCCC
Confidence 479999999999995 4556999999999999999998
|
... |
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.86 E-value=4.3e-06 Score=86.47 Aligned_cols=150 Identities=24% Similarity=0.305 Sum_probs=91.8
Q ss_pred CCCCeEEccCCcccc-CCchhcc-CCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCCcE
Q 045861 69 TSARALLLGNNNLIG-EIPHEIG-NLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKLSI 139 (508)
Q Consensus 69 ~~L~~L~L~~n~l~~-~~~~~~~-~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~ 139 (508)
.+|++|++++..... ..+..++ -+|.|++|.+.+-.+... .+|+|+.||+++++++.. .++.++++|++
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~ 199 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV 199 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence 567888887765332 2333343 367888888777665443 677777777777777633 66777888888
Q ss_pred EEccCccccc-ccChhhcCCCCCCEEeCCCCcCcCCC-CCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCe
Q 045861 140 LGIRTNSFSG-TIPSTIANLRNLQWLDLSFNYLTSST-SELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEY 217 (508)
Q Consensus 140 L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~~-~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 217 (508)
|.+.+-.+.. ..-..+..+++|+.||++........ ....+++.-..++.|+.|+.++..+.+...+.+....++|+.
T Consensus 200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~ 279 (699)
T KOG3665|consen 200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ 279 (699)
T ss_pred HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence 8877766642 22223557888888888776544322 111223344456788888888777766555444444445554
Q ss_pred eEc
Q 045861 218 IYM 220 (508)
Q Consensus 218 L~l 220 (508)
+..
T Consensus 280 i~~ 282 (699)
T KOG3665|consen 280 IAA 282 (699)
T ss_pred hhh
Confidence 443
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00017 Score=68.99 Aligned_cols=138 Identities=17% Similarity=0.216 Sum_probs=76.0
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCC-cccccCCccccCccCC
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSN-VLTYVIPSTFLSLRDI 335 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L 335 (508)
+..+.++++|++++|.+. .+|. + -++|++|.+++|.-...+|..+ .++|+.|++++| .+. .. .++|
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~-L--P~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~-sL------P~sL 114 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV-L--PNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEIS-GL------PESV 114 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC-C--CCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccc-cc------cccc
Confidence 445677888888888776 4442 1 2258888888765434555433 257888888877 333 11 2456
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCC-C-ccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS-D-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (508)
+.|++.++.... ++ .-.++|+.|.+.+++.. . ..+. .-.++|++|++++|... ..|..+. .+|+.|+++
T Consensus 115 e~L~L~~n~~~~-L~---~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls 185 (426)
T PRK15386 115 RSLEIKGSATDS-IK---NVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLH 185 (426)
T ss_pred ceEEeCCCCCcc-cc---cCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEec
Confidence 777776655431 11 11134556666432211 0 0111 11256777777777655 3444443 467777776
Q ss_pred CCc
Q 045861 414 NNS 416 (508)
Q Consensus 414 ~n~ 416 (508)
.+.
T Consensus 186 ~n~ 188 (426)
T PRK15386 186 IEQ 188 (426)
T ss_pred ccc
Confidence 653
|
|
| >PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00012 Score=59.48 Aligned_cols=122 Identities=14% Similarity=0.197 Sum_probs=51.1
Q ss_pred hhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCC
Q 045861 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV 359 (508)
Q Consensus 280 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 359 (508)
.|.++++|+.+.+.+ .+.......|..+++|+.+.+.++ +.......|..+++++.+.+.+ .+.......+..++++
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 455555566666553 233344455555666666666553 5545555566666666666654 3332334455556666
Q ss_pred cEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCC
Q 045861 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSL 407 (508)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 407 (508)
+.+++..+ +.......|.++ .|+.+.+.. .++.....+|.++++|
T Consensus 84 ~~i~~~~~-~~~i~~~~f~~~-~l~~i~~~~-~~~~i~~~~F~~~~~l 128 (129)
T PF13306_consen 84 KNIDIPSN-ITEIGSSSFSNC-NLKEINIPS-NITKIEENAFKNCTKL 128 (129)
T ss_dssp CEEEETTT--BEEHTTTTTT--T--EEE-TT-B-SS----GGG-----
T ss_pred cccccCcc-ccEEchhhhcCC-CceEEEECC-CccEECCccccccccC
Confidence 66666554 443444455665 667776665 3333444556655554
|
|
| >PRK15386 type III secretion protein GogB; Provisional | Back alignment and domain information |
|---|
Probab=97.74 E-value=0.00017 Score=68.88 Aligned_cols=159 Identities=13% Similarity=0.122 Sum_probs=95.9
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+..+.+++.|++++|.++ .+|. -.++|++|.+++|.-...+|..+. ++|++|++++|.....+| ++|+
T Consensus 48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP------~sLe 115 (426)
T PRK15386 48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLP------ESVR 115 (426)
T ss_pred HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccc------cccc
Confidence 455788999999999776 3451 224699999988654345665442 589999999884222333 4688
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCcccc--ccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG--SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
.|+++.+..... -.-.++|+.|.+.+++... ..+. .-.++|++|++++|... ..|..+. .+|+.|+++.
T Consensus 116 ~L~L~~n~~~~L----~~LPssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~SLk~L~ls~ 186 (426)
T PRK15386 116 SLEIKGSATDSI----KNVPNGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ESLQSITLHI 186 (426)
T ss_pred eEEeCCCCCccc----ccCcchHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--ccCcEEEecc
Confidence 888876554321 1122467888876533110 1111 12368999999998866 3443322 5899999987
Q ss_pred Ccccc--cCcccccCCCCCCEEECCCC
Q 045861 391 NKLQG--SIPESLGDLRSLEFLDLSNN 415 (508)
Q Consensus 391 n~l~~--~~~~~~~~l~~L~~L~L~~n 415 (508)
+.... .....+. +++ .|++.++
T Consensus 187 n~~~sLeI~~~sLP--~nl-~L~f~n~ 210 (426)
T PRK15386 187 EQKTTWNISFEGFP--DGL-DIDLQNS 210 (426)
T ss_pred cccccccCcccccc--ccc-Eechhhh
Confidence 64221 1112222 345 6777766
|
|
| >KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=2.3e-05 Score=81.21 Aligned_cols=138 Identities=16% Similarity=0.187 Sum_probs=68.6
Q ss_pred hhhhCCCCCcEEecCCCcCCC-CCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcccc-CCchhccCC
Q 045861 15 DMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIG-EIPHEIGNL 92 (508)
Q Consensus 15 ~~~~~~~~L~~L~l~~~~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l 92 (508)
.+...+|.|+.|.+++-.+.. .+......+++|+.||+|+.+++.. ..++.+++|+.|.+.+-.+.. ..-..+.+|
T Consensus 142 kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~L~mrnLe~e~~~~l~~LF~L 219 (699)
T KOG3665|consen 142 KIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQVLSMRNLEFESYQDLIDLFNL 219 (699)
T ss_pred HHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHHHhccCCCCCchhhHHHHhcc
Confidence 333345666666666654431 1222234556666666666666544 455566666666665554442 222344556
Q ss_pred CCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhh-cCCCCCCEEeC
Q 045861 93 HNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI-ANLRNLQWLDL 166 (508)
Q Consensus 93 ~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~-~~l~~L~~L~l 166 (508)
++|+.||++........ .+.....+.-..+++|+.||.+++.+....-+.+ ..-++|+.+..
T Consensus 220 ~~L~vLDIS~~~~~~~~------------~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~i~~ 282 (699)
T KOG3665|consen 220 KKLRVLDISRDKNNDDT------------KIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQIAA 282 (699)
T ss_pred cCCCeeeccccccccch------------HHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhhhhh
Confidence 66666666655432110 0000001112236788888888777764433332 23455555543
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.72 E-value=6.9e-07 Score=82.89 Aligned_cols=280 Identities=17% Similarity=0.151 Sum_probs=132.8
Q ss_pred CCcEEEccCcccccc--cChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCc-cCccCCChhhhhcc
Q 045861 136 KLSILGIRTNSFSGT--IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN-QLHGILPSSMGNLS 212 (508)
Q Consensus 136 ~L~~L~l~~~~i~~~--~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~~~~~~~~~ 212 (508)
.|+.|.++++.-.+. +-..-..+++++.|.+.++.... +......-..|.+|+.+++..| .++......++...
T Consensus 139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iT---d~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKIT---DSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred ccccccccccccCCcchhhHHhhhCCchhhhhhhcceecc---HHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 466666666643211 11223356677777666665222 1112233345666777776663 33333333344444
Q ss_pred cccCeeEccCCcCccc--CChhhhcCCCCcEEEcccCccccc--cCccccCCCCCCcEEccCCc-Cccc-cchhhhCCCC
Q 045861 213 TSLEYIYMPYCRRSGR--IPEEIGNLINLITMSLGINKLTGS--IPISLGKLQKLQGLYLYKNK-LEGS-IPDSLCNLGR 286 (508)
Q Consensus 213 ~~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~-l~~~-~~~~~~~l~~ 286 (508)
++|+++.+++|.-... +-...+++.+++.+...+|.-.+. +-..-.++..+..+++..|. +++. +...-..+.+
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~e~~le~l~~~~~~~~~i~~lnl~~c~~lTD~~~~~i~~~c~~ 295 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCLELELEALLKAAAYCLEILKLNLQHCNQLTDEDLWLIACGCHA 295 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccccccHHHHHHHhccChHhhccchhhhccccchHHHHHhhhhhH
Confidence 4666666666543221 112233444444444444322110 01111223334444444442 2211 1122233444
Q ss_pred CcEEEeeCcee-eeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcc-ccc-cCccccCCCCCcEEE
Q 045861 287 LVELQFYDNKL-FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSL-NGS-LPLDIGNLKVVVGID 363 (508)
Q Consensus 287 L~~L~L~~n~~-~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~-~~~~~~~l~~L~~L~ 363 (508)
|+.++.+++.. +...-. ....++.+|+.+.+.+|+- +.. +...-.+.+.|+.++
T Consensus 296 lq~l~~s~~t~~~d~~l~-----------------------aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~ 352 (483)
T KOG4341|consen 296 LQVLCYSSCTDITDEVLW-----------------------ALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLD 352 (483)
T ss_pred hhhhcccCCCCCchHHHH-----------------------HHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhc
Confidence 55555544421 111111 1123345555555555542 110 001113456677777
Q ss_pred CCCCcCCC--ccchhhhcCCCCCEEECcCCcc-ccc----CcccccCCCCCCEEECCCCccc-ccCcccccCCCCCCEEe
Q 045861 364 LSRNNLSD--SIPTVIGGLSNLAFFSLAYNKL-QGS----IPESLGDLRSLEFLDLSNNSFS-GFIPRSFEKLLYLEYLN 435 (508)
Q Consensus 364 l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l-~~~----~~~~~~~l~~L~~L~L~~n~~~-~~~~~~l~~l~~L~~L~ 435 (508)
+.++.... .+...-.+++.|+.|.+++|.. ++. ....-.++..|+.+.++++... +...+.+..+++|+.++
T Consensus 353 ~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~ 432 (483)
T KOG4341|consen 353 LEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITDATLEHLSICRNLERIE 432 (483)
T ss_pred ccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchHHHHHHHhhCcccceee
Confidence 76664431 1222234678888888887753 322 1222345677888888888654 34445667788888888
Q ss_pred CCCCcc
Q 045861 436 LSFNRL 441 (508)
Q Consensus 436 l~~n~l 441 (508)
+-+|+-
T Consensus 433 l~~~q~ 438 (483)
T KOG4341|consen 433 LIDCQD 438 (483)
T ss_pred eechhh
Confidence 888764
|
|
| >KOG4341 consensus F-box protein containing LRR [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.55 E-value=2.2e-06 Score=79.63 Aligned_cols=111 Identities=17% Similarity=0.079 Sum_probs=52.2
Q ss_pred cCCCCcEEEcccCcc-cccc-CccccCCCCCCcEEccCCcCc--cccchhhhCCCCCcEEEeeCcee-eee----CCccc
Q 045861 235 NLINLITMSLGINKL-TGSI-PISLGKLQKLQGLYLYKNKLE--GSIPDSLCNLGRLVELQFYDNKL-FGS----IPACI 305 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~-~~~~-~~~l~~~~~L~~L~l~~n~l~--~~~~~~~~~l~~L~~L~L~~n~~-~~~----~~~~~ 305 (508)
++++|+.+.+..++- +..- ...-.+++.|+.+++.++... ..+...-.+++.|+++.++.|.. +.. ....-
T Consensus 318 ~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~ 397 (483)
T KOG4341|consen 318 HCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDLEECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSS 397 (483)
T ss_pred CCCceEEEeccccchhhhhhhhhhhcCChhhhhhcccccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhcc
Confidence 345555555555442 1110 011123455666666555432 11222233456666666665532 211 12222
Q ss_pred CCCCCCCEEEcCCCcccc-cCCccccCccCCcEEEccCCcc
Q 045861 306 GKLSPLRNLLLHSNVLTY-VIPSTFLSLRDILVFNFSSNSL 345 (508)
Q Consensus 306 ~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~l 345 (508)
..+..|..+.+++++.+. ........+++|+.+++-+++-
T Consensus 398 c~~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~q~ 438 (483)
T KOG4341|consen 398 CSLEGLEVLELDNCPLITDATLEHLSICRNLERIELIDCQD 438 (483)
T ss_pred ccccccceeeecCCCCchHHHHHHHhhCcccceeeeechhh
Confidence 345566666776665432 2233455566677777766643
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.00028 Score=62.16 Aligned_cols=86 Identities=22% Similarity=0.233 Sum_probs=36.8
Q ss_pred hCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccC--CCCCCCCcccCCCCCCCeEEccCCcccc-CCchhccCCCC
Q 045861 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHN--QLTGLIPRDIGNLTSARALLLGNNNLIG-EIPHEIGNLHN 94 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~ 94 (508)
..+..|+.+++.+..++.. ..|-.+++|+.|.++.| ++..-++--...+++|+++++++|++.. .....+..+.+
T Consensus 40 d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~n 117 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELEN 117 (260)
T ss_pred ccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcc
Confidence 3344455555555544411 22444555555555555 3332222222233555555555555441 00112333444
Q ss_pred CCEeeCccccC
Q 045861 95 LEYLVLENNNF 105 (508)
Q Consensus 95 L~~L~L~~n~~ 105 (508)
|..|++..|..
T Consensus 118 L~~Ldl~n~~~ 128 (260)
T KOG2739|consen 118 LKSLDLFNCSV 128 (260)
T ss_pred hhhhhcccCCc
Confidence 44555544443
|
|
| >KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.00045 Score=60.82 Aligned_cols=64 Identities=25% Similarity=0.257 Sum_probs=34.7
Q ss_pred CcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCC--ccccCCchhccCCCCCCEeeCccccCC
Q 045861 41 LWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN--NLIGEIPHEIGNLHNLEYLVLENNNFD 106 (508)
Q Consensus 41 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (508)
.-.+..|+.|++.+..++.. ..|-.+++|++|.++.| .+...++-....+++|+++++++|++.
T Consensus 39 ~d~~~~le~ls~~n~gltt~--~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~ 104 (260)
T KOG2739|consen 39 TDEFVELELLSVINVGLTTL--TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIK 104 (260)
T ss_pred cccccchhhhhhhccceeec--ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccc
Confidence 33455566666666555533 34455666666666666 444333333344466666666666554
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.74 E-value=6.9e-05 Score=66.21 Aligned_cols=84 Identities=23% Similarity=0.187 Sum_probs=65.3
Q ss_pred CCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC-chhccCCCCCCEe
Q 045861 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI-PHEIGNLHNLEYL 98 (508)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L 98 (508)
+.+.++|++.++.+.++ ....+++.|++|.|+=|+|+.. ..+..+.+|+.|+|+.|.|.... ..-+.++++|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55778899999988743 2245789999999999999865 56888999999999999887432 2336788899999
Q ss_pred eCccccCCC
Q 045861 99 VLENNNFDG 107 (508)
Q Consensus 99 ~L~~n~~~~ 107 (508)
.|..|...+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 998887654
|
|
| >KOG2123 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.72 E-value=6.6e-05 Score=66.32 Aligned_cols=87 Identities=24% Similarity=0.212 Sum_probs=66.3
Q ss_pred CCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCc-ccccCCCCCCEE
Q 045861 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP-RSFEKLLYLEYL 434 (508)
Q Consensus 356 l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L 434 (508)
+.+.+.|++-+|.+.++ .....++.|+.|.|+-|+|+.. ..+..+++|++|+|..|.|.+.-. +-+.++|+|+.|
T Consensus 18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 55677888889888853 3456789999999999999854 447888999999999998885321 356788999999
Q ss_pred eCCCCcceecCC
Q 045861 435 NLSFNRLKGEIP 446 (508)
Q Consensus 435 ~l~~n~l~~~~p 446 (508)
.|..|+=.+.-+
T Consensus 94 WL~ENPCc~~ag 105 (388)
T KOG2123|consen 94 WLDENPCCGEAG 105 (388)
T ss_pred hhccCCcccccc
Confidence 999998654433
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.00037 Score=70.79 Aligned_cols=108 Identities=18% Similarity=0.101 Sum_probs=48.7
Q ss_pred ccCeeEccCCcCccc--CChhhhcCCCCcEEEcccC-ccccc----cCccccCCCCCCcEEccCCc-Cccccchhhh-CC
Q 045861 214 SLEYIYMPYCRRSGR--IPEEIGNLINLITMSLGIN-KLTGS----IPISLGKLQKLQGLYLYKNK-LEGSIPDSLC-NL 284 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~--~~~~l~~l~~L~~L~l~~~-~~~~~----~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~-~l 284 (508)
.++.+.+..+..... .......+++|+.|+++.+ ..... .......+++|+.++++.+. +++.....+. .+
T Consensus 189 ~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~~c 268 (482)
T KOG1947|consen 189 LLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALASRC 268 (482)
T ss_pred hhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHhhC
Confidence 555555555433332 2233445566666666542 11100 11122334556666666655 4433222222 25
Q ss_pred CCCcEEEeeCce-eeee-CCcccCCCCCCCEEEcCCCcc
Q 045861 285 GRLVELQFYDNK-LFGS-IPACIGKLSPLRNLLLHSNVL 321 (508)
Q Consensus 285 ~~L~~L~L~~n~-~~~~-~~~~~~~~~~L~~L~l~~n~~ 321 (508)
++|++|.+.+|. ++.. +......+++|++|++++|..
T Consensus 269 ~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~ 307 (482)
T KOG1947|consen 269 PNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG 307 (482)
T ss_pred CCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence 566666655554 2221 122223455566666665544
|
|
| >KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.25 E-value=0.00049 Score=69.88 Aligned_cols=238 Identities=19% Similarity=0.119 Sum_probs=111.7
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCc-cCccCC---ChhhhhcccccCeeEccCCc-CcccCChh
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN-QLHGIL---PSSMGNLSTSLEYIYMPYCR-RSGRIPEE 232 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-~~~~~~---~~~~~~~~~~L~~L~l~~~~-~~~~~~~~ 232 (508)
++.|+.+.+.++.-.... ........++.|+.|+++++ ...... ...+......++.++++++. ++...-..
T Consensus 187 ~~~L~~l~l~~~~~~~~~---~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~ 263 (482)
T KOG1947|consen 187 CPLLKRLSLSGCSKITDD---SLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSA 263 (482)
T ss_pred CchhhHhhhcccccCChh---hHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHH
Confidence 455666655554321110 01233455566666666552 111111 11223333466666666665 33222222
Q ss_pred hh-cCCCCcEEEcccCc-cccc-cCccccCCCCCCcEEccCCcCc-c-ccchhhhCCCCCcEEEeeCceeeeeCCcccCC
Q 045861 233 IG-NLINLITMSLGINK-LTGS-IPISLGKLQKLQGLYLYKNKLE-G-SIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307 (508)
Q Consensus 233 l~-~l~~L~~L~l~~~~-~~~~-~~~~l~~~~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~ 307 (508)
+. .+++|++|.+.++. ++.. +......++.|++|+++++... + .+......+++++.+.+.....
T Consensus 264 l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~~---------- 333 (482)
T KOG1947|consen 264 LASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLNG---------- 333 (482)
T ss_pred HHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcCC----------
Confidence 33 26777777766665 3322 2223345677888888877542 1 1223344466666655443321
Q ss_pred CCCCCEEEcCCCccc---ccCCccccCccCCcEEEccCCcccccc-CccccCCCCCcEEECCCCcCCCccchhhhcCCCC
Q 045861 308 LSPLRNLLLHSNVLT---YVIPSTFLSLRDILVFNFSSNSLNGSL-PLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNL 383 (508)
Q Consensus 308 ~~~L~~L~l~~n~~~---~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L 383 (508)
++.++.+.+.+.... .........++.++.+.+..+...... ...+.+++.|+ . ...........+
T Consensus 334 c~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l~-~---------~l~~~~~~~~~l 403 (482)
T KOG1947|consen 334 CPSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNLT-E---------SLELRLCRSDSL 403 (482)
T ss_pred CccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCcccc-h---------HHHHHhccCCcc
Confidence 444555555443331 222334556677777777776633111 12223333331 1 111111222337
Q ss_pred CEEECcCCcccc-cCcccccC-CCCCCEEECCCCccc
Q 045861 384 AFFSLAYNKLQG-SIPESLGD-LRSLEFLDLSNNSFS 418 (508)
Q Consensus 384 ~~L~L~~n~l~~-~~~~~~~~-l~~L~~L~L~~n~~~ 418 (508)
+.|+++.+.... ..-..... +..++.+++.++...
T Consensus 404 ~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~~~ 440 (482)
T KOG1947|consen 404 RVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCRVI 440 (482)
T ss_pred ceEecccCccccccchHHHhhhhhccccCCccCcccc
Confidence 888888776432 11122222 556777777777554
|
|
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.82 E-value=0.014 Score=30.36 Aligned_cols=19 Identities=37% Similarity=0.457 Sum_probs=9.2
Q ss_pred CCeEEccCCccccCCchhcc
Q 045861 71 ARALLLGNNNLIGEIPHEIG 90 (508)
Q Consensus 71 L~~L~L~~n~l~~~~~~~~~ 90 (508)
|++|++++|+++ .+|..|+
T Consensus 2 L~~Ldls~n~l~-~ip~~~~ 20 (22)
T PF00560_consen 2 LEYLDLSGNNLT-SIPSSFS 20 (22)
T ss_dssp ESEEEETSSEES-EEGTTTT
T ss_pred ccEEECCCCcCE-eCChhhc
Confidence 455555555555 4444333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape [] | Back alignment and domain information |
|---|
Probab=94.69 E-value=0.013 Score=30.52 Aligned_cols=11 Identities=55% Similarity=0.975 Sum_probs=4.2
Q ss_pred CEEECCCCccc
Q 045861 408 EFLDLSNNSFS 418 (508)
Q Consensus 408 ~~L~L~~n~~~ 418 (508)
++||+++|+++
T Consensus 3 ~~Ldls~n~l~ 13 (22)
T PF00560_consen 3 EYLDLSGNNLT 13 (22)
T ss_dssp SEEEETSSEES
T ss_pred cEEECCCCcCE
Confidence 33333333333
|
LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A .... |
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.67 E-value=0.00064 Score=58.65 Aligned_cols=93 Identities=18% Similarity=0.261 Sum_probs=80.8
Q ss_pred CCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhcc
Q 045861 11 SLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIG 90 (508)
Q Consensus 11 ~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 90 (508)
++|..-...+...+.||++.|.+. .+...|+.+..|..|+++.|.+. ..|..+++...++++++..|... ..|.+++
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~ 108 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQK 108 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCcccc
Confidence 566444467889999999999987 56677889999999999999887 77899999999999999999887 8899999
Q ss_pred CCCCCCEeeCccccCC
Q 045861 91 NLHNLEYLVLENNNFD 106 (508)
Q Consensus 91 ~l~~L~~L~L~~n~~~ 106 (508)
..++++++++.++.+.
T Consensus 109 k~~~~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 109 KEPHPKKNEQKKTEFF 124 (326)
T ss_pred ccCCcchhhhccCcch
Confidence 9999999999998754
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.24 E-value=0.0002 Score=71.03 Aligned_cols=181 Identities=25% Similarity=0.226 Sum_probs=86.1
Q ss_pred CcEEEcccCccccc----cCccccCCCCCCcEEccCCcCccccchhh----hCC-CCCcEEEeeCceeeeeC----Cccc
Q 045861 239 LITMSLGINKLTGS----IPISLGKLQKLQGLYLYKNKLEGSIPDSL----CNL-GRLVELQFYDNKLFGSI----PACI 305 (508)
Q Consensus 239 L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~~~~~~----~~~~ 305 (508)
+..+.+.+|.+... +...+...+.|+.|++++|.+.+.-...+ ... ..+++|++..|.++... ...+
T Consensus 89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L 168 (478)
T KOG4308|consen 89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL 168 (478)
T ss_pred HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence 66677777766532 23345556777778888777764322222 111 34555666666554322 2333
Q ss_pred CCCCCCCEEEcCCCccccc----CCc----cccCccCCcEEEccCCcccccc----CccccCCCC-CcEEECCCCcCCCc
Q 045861 306 GKLSPLRNLLLHSNVLTYV----IPS----TFLSLRDILVFNFSSNSLNGSL----PLDIGNLKV-VVGIDLSRNNLSDS 372 (508)
Q Consensus 306 ~~~~~L~~L~l~~n~~~~~----~~~----~~~~~~~L~~L~L~~n~l~~~~----~~~~~~l~~-L~~L~l~~n~l~~~ 372 (508)
.....++.++++.|.+... .+. .+....++++|++..|.++... ...+...+. +..+++..|.+.+.
T Consensus 169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~ 248 (478)
T KOG4308|consen 169 EKNEHLTELDLSLNGLIELGLLVLSQALESAASPLSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDV 248 (478)
T ss_pred hcccchhHHHHHhcccchhhhHHHhhhhhhhhcccccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchH
Confidence 4456666666666665311 111 1223445555666655554211 112222333 44455555555533
Q ss_pred cc----hhhhcC-CCCCEEECcCCcccccC----cccccCCCCCCEEECCCCcccc
Q 045861 373 IP----TVIGGL-SNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 373 ~~----~~~~~l-~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
.. ..+..+ ..++.++++.|.++... ...+..++.++.+.+++|.+..
T Consensus 249 g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 249 GVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred HHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 11 122223 34455555555554322 2333344455555555555543
|
|
| >PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D | Back alignment and domain information |
|---|
Probab=92.81 E-value=0.052 Score=26.18 Aligned_cols=13 Identities=54% Similarity=0.741 Sum_probs=5.2
Q ss_pred CCCEEECCCCccc
Q 045861 406 SLEFLDLSNNSFS 418 (508)
Q Consensus 406 ~L~~L~L~~n~~~ 418 (508)
+|++|++++|+++
T Consensus 2 ~L~~L~l~~n~L~ 14 (17)
T PF13504_consen 2 NLRTLDLSNNRLT 14 (17)
T ss_dssp T-SEEEETSS--S
T ss_pred ccCEEECCCCCCC
Confidence 4555555555544
|
... |
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.14 E-value=0.025 Score=48.07 Aligned_cols=79 Identities=27% Similarity=0.139 Sum_probs=32.8
Q ss_pred cEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC-cccc-cCCCCCCEEECCCC-cccccCcccccCCCCCCEEeC
Q 045861 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI-PESL-GDLRSLEFLDLSNN-SFSGFIPRSFEKLLYLEYLNL 436 (508)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~-~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l 436 (508)
+.+|-+++.|..+.-+-+.++++++.|.+.+|.=-+.. .+.+ +-.++|+.|+|++| +|++..-..+..+++|+.|.+
T Consensus 104 eaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~l 183 (221)
T KOG3864|consen 104 EAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLHL 183 (221)
T ss_pred EEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHHh
Confidence 34444444444444444444455555555444321100 0000 11245555555555 344433344444455555544
Q ss_pred CC
Q 045861 437 SF 438 (508)
Q Consensus 437 ~~ 438 (508)
.+
T Consensus 184 ~~ 185 (221)
T KOG3864|consen 184 YD 185 (221)
T ss_pred cC
Confidence 43
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.17 Score=27.43 Aligned_cols=15 Identities=53% Similarity=0.682 Sum_probs=7.1
Q ss_pred CCCEEECCCCccccc
Q 045861 406 SLEFLDLSNNSFSGF 420 (508)
Q Consensus 406 ~L~~L~L~~n~~~~~ 420 (508)
+|+.|+|++|++...
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00370 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444455555544433
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=91.38 E-value=0.17 Score=27.43 Aligned_cols=15 Identities=53% Similarity=0.682 Sum_probs=7.1
Q ss_pred CCCEEECCCCccccc
Q 045861 406 SLEFLDLSNNSFSGF 420 (508)
Q Consensus 406 ~L~~L~L~~n~~~~~ 420 (508)
+|+.|+|++|++...
T Consensus 3 ~L~~L~L~~N~l~~l 17 (26)
T smart00369 3 NLRELDLSNNQLSSL 17 (26)
T ss_pred CCCEEECCCCcCCcC
Confidence 444455555544433
|
|
| >KOG3864 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=90.02 E-value=0.039 Score=47.00 Aligned_cols=82 Identities=18% Similarity=0.095 Sum_probs=50.8
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCcccc--chhhhCCCCCcEEEeeCc-eeeeeCCcccCCCCCCCEE
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDN-KLFGSIPACIGKLSPLRNL 314 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L 314 (508)
.++.++-+++.+..+-.+.+..++.++.|.+.+|.--+.. ...-.-.++|+.|++++| .|+...-.++.++++|+.|
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L 181 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL 181 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence 4667777777776666666677777777777777532111 111123567777777777 5665555666667777777
Q ss_pred EcCCC
Q 045861 315 LLHSN 319 (508)
Q Consensus 315 ~l~~n 319 (508)
.+.+-
T Consensus 182 ~l~~l 186 (221)
T KOG3864|consen 182 HLYDL 186 (221)
T ss_pred HhcCc
Confidence 66653
|
|
| >KOG0473 consensus Leucine-rich repeat protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=0.0069 Score=52.50 Aligned_cols=89 Identities=21% Similarity=0.186 Sum_probs=73.1
Q ss_pred ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCC
Q 045861 351 LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430 (508)
Q Consensus 351 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 430 (508)
..+..+...+.||++.|++. ..-.-|+-++.+..|+++.|.+. ..|+.+.+...++.+++.+|..+ ..|.++...+.
T Consensus 36 ~ei~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~ 112 (326)
T KOG0473|consen 36 REIASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPH 112 (326)
T ss_pred hhhhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCC
Confidence 34566777888899998877 34445677788999999999987 77888888888899999999888 67888999999
Q ss_pred CCEEeCCCCcce
Q 045861 431 LEYLNLSFNRLK 442 (508)
Q Consensus 431 L~~L~l~~n~l~ 442 (508)
+++++..+|++.
T Consensus 113 ~k~~e~k~~~~~ 124 (326)
T KOG0473|consen 113 PKKNEQKKTEFF 124 (326)
T ss_pred cchhhhccCcch
Confidence 999999999865
|
|
| >smart00370 LRR Leucine-rich repeats, outliers | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.32 Score=26.34 Aligned_cols=13 Identities=46% Similarity=0.646 Sum_probs=6.0
Q ss_pred CCcEEEcccCCCC
Q 045861 46 ELIAISLSHNQLT 58 (508)
Q Consensus 46 ~L~~L~L~~n~l~ 58 (508)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00370 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
|
|
| >smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily | Back alignment and domain information |
|---|
Probab=89.24 E-value=0.32 Score=26.34 Aligned_cols=13 Identities=46% Similarity=0.646 Sum_probs=6.0
Q ss_pred CCcEEEcccCCCC
Q 045861 46 ELIAISLSHNQLT 58 (508)
Q Consensus 46 ~L~~L~L~~n~l~ 58 (508)
+|++|+|++|+++
T Consensus 3 ~L~~L~L~~N~l~ 15 (26)
T smart00369 3 NLRELDLSNNQLS 15 (26)
T ss_pred CCCEEECCCCcCC
Confidence 4444444444444
|
|
| >KOG4308 consensus LRR-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.04 E-value=0.0031 Score=62.75 Aligned_cols=39 Identities=26% Similarity=0.275 Sum_probs=24.2
Q ss_pred CCCcEEEcccCccccc----cCccccCCCCCCcEEccCCcCcc
Q 045861 237 INLITMSLGINKLTGS----IPISLGKLQKLQGLYLYKNKLEG 275 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~ 275 (508)
..+++++++.|.++.. ....+..++.++.+.++.|.+.+
T Consensus 262 ~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~ 304 (478)
T KOG4308|consen 262 ETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD 304 (478)
T ss_pred hhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence 4556777777776543 22334456677777777777653
|
|
| >PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A | Back alignment and domain information |
|---|
Probab=87.11 E-value=0.11 Score=27.60 Aligned_cols=13 Identities=62% Similarity=0.807 Sum_probs=4.6
Q ss_pred CCCEEECCCCccc
Q 045861 406 SLEFLDLSNNSFS 418 (508)
Q Consensus 406 ~L~~L~L~~n~~~ 418 (508)
+|++|+|++|+++
T Consensus 3 ~L~~L~l~~n~i~ 15 (24)
T PF13516_consen 3 NLETLDLSNNQIT 15 (24)
T ss_dssp T-SEEE-TSSBEH
T ss_pred CCCEEEccCCcCC
Confidence 3444444444433
|
... |
| >TIGR00864 PCC polycystin cation channel protein | Back alignment and domain information |
|---|
Probab=86.69 E-value=0.25 Score=58.19 Aligned_cols=33 Identities=30% Similarity=0.276 Sum_probs=18.7
Q ss_pred ECCCCcccccCcccccCCCCCCEEeCCCCccee
Q 045861 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 411 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
||++|+|+.+.+..|..+++|+.|+|++|++.+
T Consensus 1 DLSnN~LstLp~g~F~~L~sL~~LdLsgNPw~C 33 (2740)
T TIGR00864 1 DISNNKISTIEEGICANLCNLSEIDLSGNPFEC 33 (2740)
T ss_pred CCCCCcCCccChHHhccCCCceEEEeeCCcccc
Confidence 455666665555555556666655555554443
|
Note: this model has been restricted to the amino half because for technical reasons. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 508 | ||||
| 3riz_A | 772 | Crystal Structure Of The Plant Steroid Receptor Bri | 6e-31 | ||
| 3rgx_A | 768 | Structural Insight Into Brassinosteroid Perception | 4e-30 | ||
| 1ogq_A | 313 | The Crystal Structure Of Pgip (Polygalacturonase In | 2e-20 | ||
| 2o6q_A | 270 | Structural Diversity Of The Hagfish Variable Lympho | 4e-07 | ||
| 2z63_A | 570 | Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 A | 2e-05 | ||
| 1w8a_A | 192 | Third Lrr Domain Of Drosophila Slit Length = 192 | 4e-05 | ||
| 3rfj_A | 279 | Design Of A Binding Scaffold Based On Variable Lymp | 3e-04 | ||
| 3rfs_A | 272 | Design Of A Binding Scaffold Based On Variable Lymp | 3e-04 | ||
| 2z66_A | 306 | Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 A | 4e-04 | ||
| 4g8a_A | 635 | Crystal Structure Of Human Tlr4 Polymorphic Variant | 6e-04 | ||
| 3fxi_A | 605 | Crystal Structure Of The Human Tlr4-Human Md-2-E.Co | 7e-04 |
| >pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772 | Back alignment and structure |
|
| >pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768 | Back alignment and structure |
|
| >pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313 | Back alignment and structure |
|
| >pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270 | Back alignment and structure |
|
| >pdb|2Z63|A Chain A, Crystal Structure Of The Tv8 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 570 | Back alignment and structure |
|
| >pdb|1W8A|A Chain A, Third Lrr Domain Of Drosophila Slit Length = 192 | Back alignment and structure |
|
| >pdb|3RFJ|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 279 | Back alignment and structure |
|
| >pdb|3RFS|A Chain A, Design Of A Binding Scaffold Based On Variable Lymphocyte Receptors Of Jawless Vertebrates By Module Engineering Length = 272 | Back alignment and structure |
|
| >pdb|2Z66|A Chain A, Crystal Structure Of The Vt3 Hybrid Of Human Tlr4 And Hagfish Vlrb.61 Length = 306 | Back alignment and structure |
|
| >pdb|4G8A|A Chain A, Crystal Structure Of Human Tlr4 Polymorphic Variant D299g And T399i In Complex With Md-2 And Lps Length = 635 | Back alignment and structure |
|
| >pdb|3FXI|A Chain A, Crystal Structure Of The Human Tlr4-Human Md-2-E.Coli Lps Ra Complex Length = 605 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 410 bits (1056), Expect = e-136
Identities = 157/503 (31%), Positives = 228/503 (45%), Gaps = 22/503 (4%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
A N TG +PD + L LD++ NH G VP C L +++LS N +G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334
Query: 62 PRD-IGNLTSARALLLGNNNLIGEIPHEIGNLH-NLEYLVLENNNFDGP--------RHS 111
P D + + + L L N GE+P + NL +L L L +NNF GP +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
L+ LYL+ N F+G IP + N S+L L + N SGTIPS++ +L L+ L L N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231
L + L+ + L N L G +PS + N T+L +I + R +G IP+
Sbjct: 455 EGE-----IPQELMYVKTLETLILDFNDLTGEIPSGLSNC-TNLNWISLSNNRLTGEIPK 508
Query: 232 EIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291
IG L NL + L N +G+IP LG + L L L N G+IP ++ +
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIA-- 566
Query: 292 FYDNKLFGSIPACIGKLSPLRNLLLHSNV--LTYVIPSTFLSLRDILVFNFSSNSLNGSL 349
N + G I + N+ + L N +S G
Sbjct: 567 --ANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHT 624
Query: 350 PLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEF 409
N ++ +D+S N LS IP IG + L +L +N + GSIP+ +GDLR L
Sbjct: 625 SPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNI 684
Query: 410 LDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469
LDLS+N G IP++ L L ++LS N L G IP F F F+ N LCG P
Sbjct: 685 LDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYP 744
Query: 470 NLQVPPRKDIKTSPHRKSRKNTR 492
+ P + H++S +
Sbjct: 745 LPRCDPSNADGYAHHQRSHHHHH 767
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 347 bits (892), Expect = e-111
Identities = 138/478 (28%), Positives = 215/478 (44%), Gaps = 29/478 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQ---CQELIAISLSHNQLT 58
+ ++NTL L L+ LD++ N ++G C EL +++S N+++
Sbjct: 132 NVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKIS 191
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSN 112
G + + + L + +NN IP +G+ L++L + N G +
Sbjct: 192 GDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIA-NLRNLQWLDLSFNYL 171
L+ L + N F G IP L L + N F+G IP ++ L LDLS N+
Sbjct: 249 LKLLNISSNQFVGPIPPLPL--KSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHF 306
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILP-SSMGNLSTSLEYIYMPYCRRSGRIP 230
+ +C L+ + L+ N G LP ++ + L+ + + + SG +P
Sbjct: 307 YG-----AVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMR-GLKVLDLSFNEFSGELP 360
Query: 231 EEIGNL-INLITMSLGINKLTGSIPISLGKLQK--LQGLYLYKNKLEGSIPDSLCNLGRL 287
E + NL +L+T+ L N +G I +L + K LQ LYL N G IP +L N L
Sbjct: 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSEL 420
Query: 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347
V L N L G+IP+ +G LS LR+L L N+L IP + ++ + N L G
Sbjct: 421 VSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTG 480
Query: 348 SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSL 407
+P + N + I LS N L+ IP IG L NLA L+ N G+IP LGD RSL
Sbjct: 481 EIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSL 540
Query: 408 EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFL 465
+LDL+ N F+G IP + K ++ N + G+ + L
Sbjct: 541 IWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKRYVYIKNDGMKKECHGAGNLL 594
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 336 bits (865), Expect = e-107
Identities = 127/460 (27%), Positives = 206/460 (44%), Gaps = 24/460 (5%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVP--RNLWQCQELIAISLSHNQLTG 59
+N+ + GS+ + L +LD++ N ++GPV +L C L +++S N L
Sbjct: 83 FLSNSHINGSVSG--FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDF 140
Query: 60 LIPRDIG-NLTSARALLLGNNNLIGEIPHEI---GNLHNLEYLVLENNNFDGP----RHS 111
G L S L L N++ G L++L + N G R
Sbjct: 141 PGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCV 200
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
NLE L + NNFS IP + + S L L I N SG I+ L+ L++S N
Sbjct: 201 NLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQF 259
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231
L ++L+ + L N+ G +P + +L + + G +P
Sbjct: 260 VGPIPPL-------PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312
Query: 232 EIGNLINLITMSLGINKLTGSIPI-SLGKLQKLQGLYLYKNKLEGSIPDSLCNL-GRLVE 289
G+ L +++L N +G +P+ +L K++ L+ L L N+ G +P+SL NL L+
Sbjct: 313 FFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLT 372
Query: 290 LQFYDNKLFGSIPACIGKLSP--LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347
L N G I + + L+ L L +N T IP T + +++ + S N L+G
Sbjct: 373 LDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSG 432
Query: 348 SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSL 407
++P +G+L + + L N L IP + + L L +N L G IP L + +L
Sbjct: 433 TIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNL 492
Query: 408 EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
++ LSNN +G IP+ +L L L LS N G IP+
Sbjct: 493 NWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPA 532
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 321 bits (825), Expect = e-101
Identities = 128/482 (26%), Positives = 211/482 (43%), Gaps = 44/482 (9%)
Query: 22 RLQALDINNNHVT---GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78
++ ++D+++ + V +L L ++ LS++ + G + S +L L
Sbjct: 51 KVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSR 109
Query: 79 NNLIGEIP--HEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPS 129
N+L G + +G+ L++L + +N D P + ++LE L L N+ SG
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 130 FIF---NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRN 186
+L L I N SG + ++ NL++LD+S N ++ + L +
Sbjct: 170 GWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTG------IPFLGD 221
Query: 187 CRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGI 246
C L+ +D++GN+L G ++ T L+ + + + G IP L +L +SL
Sbjct: 222 CSALQHLDISGNKLSGDFSRAISTC-TELKLLNISSNQFVGPIPPL--PLKSLQYLSLAE 278
Query: 247 NKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPA-C 304
NK TG IP L G L GL L N G++P + L L N G +P
Sbjct: 279 NKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDT 338
Query: 305 IGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIL-VFNFSSNSLNGSLPLDIGN--LKVVVG 361
+ K+ L+ L L N + +P + +L L + SSN+ +G + ++ +
Sbjct: 339 LLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQE 398
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+ L N + IP + S L L++N L G+IP SLG L L L L N G I
Sbjct: 399 LYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEI 458
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN--------FSDNSFMGN--SFLCGSPNL 471
P+ + LE L L FN L GEIPS +N S+N G ++ NL
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPS--GLSNCTNLNWISLSNNRLTGEIPKWIGRLENL 516
Query: 472 QV 473
+
Sbjct: 517 AI 518
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 276 bits (709), Expect = 8e-85
Identities = 116/431 (26%), Positives = 184/431 (42%), Gaps = 33/431 (7%)
Query: 66 GNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP-----RHSNLERLYLER 120
+TS N + + +L LE L L N++ +G ++L L L R
Sbjct: 50 DKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSGFKCSASLTSLDLSR 109
Query: 121 NNFSGTIPSF--IFNASKLSILGIRTNSFSGTIP-STIANLRNLQWLDLSFNYLTSSTSE 177
N+ SG + + + + S L L + +N+ S L +L+ LDLS N ++ +
Sbjct: 110 NSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVV 169
Query: 178 LSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237
LS C LK + ++GN++ G + + +LE++ + S IP +G+
Sbjct: 170 GWVLSD--GCGELKHLAISGNKISGDVD--VSRC-VNLEFLDVSSNNFSTGIP-FLGDCS 223
Query: 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297
L + + NKL+G ++ +L+ L + N+ G IP L L L +NK
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKF 281
Query: 298 FGSIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD-IGN 355
G IP + G L L L N +P F S + SSN+ +G LP+D +
Sbjct: 282 TGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLK 341
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLS-NLAFFSLAYNKLQGSIPESLGD--LRSLEFLDL 412
++ + +DLS N S +P + LS +L L+ N G I +L +L+ L L
Sbjct: 342 MRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYL 401
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF--------SDNSFMGN-- 462
NN F+G IP + L L+LSFN L G IPS S + N G
Sbjct: 402 QNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPS--SLGSLSKLRDLKLWLNMLEGEIP 459
Query: 463 SFLCGSPNLQV 473
L L+
Sbjct: 460 QELMYVKTLET 470
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 8e-28
Identities = 39/208 (18%), Positives = 80/208 (38%), Gaps = 19/208 (9%)
Query: 282 CNLGRLVELQFYDNKL---FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
C ++ + L F ++ + + L+ L +L L ++ + + F +
Sbjct: 47 CRDDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLESLFLSNSHINGSVSG-FKCSASLTSL 105
Query: 339 NFSSNSLNGSLP--LDIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQG 395
+ S NSL+G + +G+ + +++S N L L++L L+ N + G
Sbjct: 106 DLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISG 165
Query: 396 SIPESL---GDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452
+ L+ L +S N SG + + + LE+L++S N IP +
Sbjct: 166 ANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCS 223
Query: 453 N-----FSDNSFMGN--SFLCGSPNLQV 473
S N G+ + L++
Sbjct: 224 ALQHLDISGNKLSGDFSRAISTCTELKL 251
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 5e-27
Identities = 39/180 (21%), Positives = 69/180 (38%), Gaps = 13/180 (7%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHN--QLT 58
+D N G++P M + Q+ I N + G + + N +
Sbjct: 543 LDLNTNLFNGTIPAAMFK-----QSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQ 597
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSN 112
G+ + L++ + + G N ++ +L + N G
Sbjct: 598 GIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPY 657
Query: 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
L L L N+ SG+IP + + L+IL + +N G IP ++ L L +DLS N L+
Sbjct: 658 LFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLS 717
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 253 bits (648), Expect = 9e-81
Identities = 87/291 (29%), Positives = 130/291 (44%), Gaps = 29/291 (9%)
Query: 182 SSLRNCRNLKVIDLTGNQLHG--ILPSSMGNLSTSLEYIYMP-YCRRSGRIPEEIGNLIN 238
+ + +DL+G L +PSS+ NL L ++Y+ G IP I L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQ 102
Query: 239 LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLF 298
L + + ++G+IP L +++ L L N L G++P S+ +L LV + F N++
Sbjct: 103 LHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 299 GSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKV 358
G+IP G S L + S N L G +P NL +
Sbjct: 163 GAIPDSYGSFSKLFTSM-----------------------TISRNRLTGKIPPTFANLNL 199
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418
+DLSRN L + G N LA N L + +G ++L LDL NN
Sbjct: 200 AF-VDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIY 257
Query: 419 GFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469
G +P+ +L +L LN+SFN L GEIP G + F +++ N LCGSP
Sbjct: 258 GTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 209 bits (534), Expect = 7e-64
Identities = 76/304 (25%), Positives = 124/304 (40%), Gaps = 27/304 (8%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGE--IPHEIGNLHNLEYLVLENNNFDG 107
+ G++ L L NL IP + NL L +L +
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGI---- 86
Query: 108 PRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLS 167
NN G IP I ++L L I + SG IP ++ ++ L LD S
Sbjct: 87 -------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFS 133
Query: 168 FNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSG 227
+N L+ + S+ + NL I GN++ G +P S G+ S + + R +G
Sbjct: 134 YNALSG-----TLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTG 188
Query: 228 RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287
+IP NL NL + L N L G + G + Q ++L KN L + + L
Sbjct: 189 KIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNL 246
Query: 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347
L +N+++G++P + +L L +L + N L IP +L+ V +++N
Sbjct: 247 NGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNKCLC 305
Query: 348 SLPL 351
PL
Sbjct: 306 GSPL 309
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 205 bits (524), Expect = 2e-62
Identities = 78/298 (26%), Positives = 115/298 (38%), Gaps = 31/298 (10%)
Query: 26 LDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG--LIPRDIGNLTSARALLLGN-NNLI 82
D N G + Q + + LS L IP + NL L +G NNL+
Sbjct: 31 TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLV 90
Query: 83 GEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGI 142
G IP I L L Y LY+ N SG IP F+ L L
Sbjct: 91 GPIPPAIAKLTQLHY------------------LYITHTNVSGAIPDFLSQIKTLVTLDF 132
Query: 143 RTNSFSGTIPSTIANLRNLQWLDLSFNYLTSST-SELSFLSSLRNCRNLKVIDLTGNQLH 201
N+ SGT+P +I++L NL + N ++ + S L + ++ N+L
Sbjct: 133 SYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKL-----FTSMTISRNRLT 187
Query: 202 GILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQ 261
G +P + NL +L ++ + G G+ N + L N L + +G +
Sbjct: 188 GKIPPTFANL--NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSK 244
Query: 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSN 319
L GL L N++ G++P L L L L N L G IP G L +N
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNLQRFDVSAYANN 301
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 183 bits (468), Expect = 3e-54
Identities = 79/305 (25%), Positives = 120/305 (39%), Gaps = 56/305 (18%)
Query: 2 DFANNTLTGS--LPDDMCQHLPRLQALDI-NNNHVTGPVPRNLWQCQELIAISLSHNQLT 58
D + L +P + +LP L L I N++ GP+P + + +L + ++H ++
Sbjct: 56 DLSGLNLPKPYPIPSSLA-NLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYL 118
G IP + + + L N L G +P I +L NL +
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSL------------------PNLVGITF 156
Query: 119 ERNNFSGTIPSFIFNASKLS-ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSE 177
+ N SG IP + SKL + I N +G IP T ANL NL ++DLS N L S
Sbjct: 157 DGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDAS- 214
Query: 178 LSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237
+ +N + I L N L L +G
Sbjct: 215 ----VLFGSDKNTQKIHLAKNSLAFDLGK--------------------------VGLSK 244
Query: 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297
NL + L N++ G++P L +L+ L L + N L G IP NL R + +NK
Sbjct: 245 NLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG-NLQRFDVSAYANNKC 303
Query: 298 FGSIP 302
P
Sbjct: 304 LCGSP 308
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-26
Identities = 38/169 (22%), Positives = 64/169 (37%), Gaps = 21/169 (12%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ F N ++G++PD ++ I+ N +TG +P L + LS N L G
Sbjct: 154 ITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGD 212
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLER 120
G+ + + + L N+L ++ ++G NL L L
Sbjct: 213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNG------------------LDLRN 253
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
N GT+P + L L + N+ G IP NL+ + N
Sbjct: 254 NRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANN 301
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 239 bits (611), Expect = 9e-72
Identities = 76/500 (15%), Positives = 157/500 (31%), Gaps = 64/500 (12%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLW------------------- 42
+G +PD + Q L L+ L + ++
Sbjct: 87 SLEGFGASGRVPDAIGQ-LTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHY 145
Query: 43 -----------QCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGN 91
+LI ++ + I + + +NN+ + +
Sbjct: 146 QKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNI-TFVSKAVMR 204
Query: 92 LHNLEYLVLENNNFDG-PRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGT 150
L L + N+ F E E T N L+ + +
Sbjct: 205 LTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTK 264
Query: 151 IPSTIANLRNLQWLDLSFNYLTS---STSELSFLSSLRNCRNLKVIDLTGNQL-HGILPS 206
+P+ + L +Q ++++ N S + L+ +++I + N L + +
Sbjct: 265 LPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVET 324
Query: 207 SMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266
S+ + L + Y + G G+ I L +++L N++T G ++++ L
Sbjct: 325 SLQKM-KKLGMLECLYNQLEG-KLPAFGSEIKLASLNLAYNQITEIPANFCGFTEQVENL 382
Query: 267 YLYKNKLEGSIPDSL--CNLGRLVELQFYDNKL-------FGSIPACIGKLSPLRNLLLH 317
NKL+ IP+ ++ + + F N++ F + K + ++ L
Sbjct: 383 SFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLS 441
Query: 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNG-------SLPLDIGNLKVVVGIDLSRNNLS 370
+N ++ F + + N N L + N ++ IDL N L+
Sbjct: 442 NNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT 501
Query: 371 DSIPTV-IGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN------NSFSGFIPR 423
L L L+YN P + +L+ + N N P
Sbjct: 502 KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPE 560
Query: 424 SFEKLLYLEYLNLSFNRLKG 443
L L + N ++
Sbjct: 561 GITLCPSLTQLQIGSNDIRK 580
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 1e-69
Identities = 74/474 (15%), Positives = 150/474 (31%), Gaps = 58/474 (12%)
Query: 10 GSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG----LIPRDI 65
G+ P R+ L + +G VP + Q EL ++L + P+ I
Sbjct: 70 GAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGI 129
Query: 66 GNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSG 125
S + S+L + + +
Sbjct: 130 SANMSDEQKQKMRMHYQKTFVDYDPRED----------------FSDLIKDCINSDPQQK 173
Query: 126 TIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLR 185
+I K + +G +N+ + + + L L+ + + +
Sbjct: 174 SIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAEN---------- 222
Query: 186 NCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245
C + + Q + NL L + + C ++P + L + +++
Sbjct: 223 ICEAWENENSEYAQQYKTEDLKWDNL-KDLTDVEVYNCPNLTKLPTFLKALPEMQLINVA 281
Query: 246 INKLT--------GSIPISLGKLQKLQGLYLYKNKL-EGSIPDSLCNLGRLVELQFYDNK 296
N+ +K+Q +Y+ N L + SL + +L L+ N+
Sbjct: 282 CNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQ 341
Query: 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG-SLPLDIGN 355
L G +PA G L +L L N +T + + + +F+ N L D +
Sbjct: 342 LEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400
Query: 356 LKVVVGIDLSRNNLS-------DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
+ V+ ID S N + D + N++ +L+ N++ E L
Sbjct: 401 VSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLS 460
Query: 409 FLDLSNNSFSGF-------IPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
++L N + +F+ L ++L FN+L +
Sbjct: 461 SINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLP 513
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 232 bits (593), Expect = 4e-69
Identities = 61/464 (13%), Positives = 145/464 (31%), Gaps = 53/464 (11%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+N +T + + + L +L+ + N+ W+ + + + Q
Sbjct: 189 GQLSNNIT-FVSKAVMR-LTKLRQFYMGNSPFVAENICEAWENE-----NSEYAQQYKTE 241
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERN 121
NL + + N + ++P + L ++ + + N E+
Sbjct: 242 DLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGIS----------GEQL 291
Query: 122 NFSGTIPSFIFNASKLSILGIRTNSF-SGTIPSTIANLRNLQWLDLSFNYLTSSTSELSF 180
+ K+ I+ I N+ + + +++ ++ L L+ +N L
Sbjct: 292 KDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPAFG- 350
Query: 181 LSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE--EIGNLIN 238
+ L ++L NQ+ I + G +E + + + IP + ++
Sbjct: 351 -----SEIKLASLNLAYNQITEIPANFCGFT-EQVENLSFAHNKLKY-IPNIFDAKSVSV 403
Query: 239 LITMSLGINKLTG-------SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291
+ + N++ + + K + + L N++ + L +
Sbjct: 404 MSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSIN 463
Query: 292 FYDNKL-------FGSIPACIGKLSPLRNLLLHSNVLTYVIPS-TFLSLRDILVFNFSSN 343
N L L ++ L N LT + +L ++ + S N
Sbjct: 464 LMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYN 523
Query: 344 SLNGSLPLDIGNLKVVVGI------DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397
S + P N + G D N P I +L + N ++ +
Sbjct: 524 SFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KV 581
Query: 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
E + ++ LD+ +N + L +++
Sbjct: 582 NEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKT 623
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 175 bits (445), Expect = 3e-48
Identities = 50/345 (14%), Positives = 112/345 (32%), Gaps = 19/345 (5%)
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSF 180
+ + + + +++ L + SG +P I L L+ L L + + L
Sbjct: 67 DMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNER-LFG 125
Query: 181 LSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTS-LEYIYMPYCRRSGRIPEEIGNLINL 239
+ + + S L + + I + +
Sbjct: 126 PKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKD 185
Query: 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFG 299
+ N +T + ++ +L KL+ Y+ + + +
Sbjct: 186 TQIGQLSNNIT-FVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENS-----EYAQQYK 239
Query: 300 SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSL--------NGSLPL 351
+ L L ++ +++ +P+ +L ++ + N + N +
Sbjct: 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA 299
Query: 352 DIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
D + + I + NNL + T + + L YN+L+G +P G L L
Sbjct: 300 DAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLPA-FGSEIKLASL 358
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
+L+ N + +E L+ + N+LK IP+ + S
Sbjct: 359 NLAYNQITEIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVS 402
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 170 bits (432), Expect = 3e-46
Identities = 58/336 (17%), Positives = 105/336 (31%), Gaps = 28/336 (8%)
Query: 20 LPRLQALDINNNH-VTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78
++Q + I N+ T PV +L + ++L + +NQL G +P G+ +L L
Sbjct: 304 GEKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAY 362
Query: 79 NNLIGEIPHEIGNLHNLEYLVLENNNF-------DGPRHSNLERLYLERNNFSG------ 125
N + + G +E L +N D S + + N
Sbjct: 363 NQITEIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF 422
Query: 126 -TIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS--STSELSFLS 182
+ F +S + + N S + L ++L N LT S
Sbjct: 423 DPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENE 482
Query: 183 SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITM 242
+ +N L IDL N+L + L I + Y S P + N L
Sbjct: 483 NFKNTYLLTSIDLRFNKLTKLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGF 541
Query: 243 SLG------INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296
+ N+ P + L L + N + + + + + L DN
Sbjct: 542 GIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKITP--NISVLDIKDNP 598
Query: 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
+ + +L + + L +
Sbjct: 599 NISIDLSYVCPYIEAGMYMLFYDKTQDIRGCDALDI 634
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 5e-31
Identities = 29/248 (11%), Positives = 75/248 (30%), Gaps = 12/248 (4%)
Query: 221 PYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEG----S 276
+ + + + +SL +G +P ++G+L +L+ L L + +
Sbjct: 65 ELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLF 124
Query: 277 IPDSLCNLGRLVELQFYDNKLFGSIPACIGKL--SPLRNLLLHSNVLTYVIPSTFLSLRD 334
P + + Q + + S L ++S+ I +
Sbjct: 125 GPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLK 184
Query: 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
SN++ + + L + + + N Y +
Sbjct: 185 DTQIGQLSNNI-TFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSE-----YAQQY 238
Query: 395 GSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
+ +L+ L +++ N +P + L ++ +N++ NR + +
Sbjct: 239 KTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQAL 298
Query: 455 SDNSFMGN 462
+D
Sbjct: 299 ADAPVGEK 306
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 1e-05
Identities = 12/81 (14%), Positives = 24/81 (29%), Gaps = 4/81 (4%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
D N P+ + P L L I +N + V + + + + N +
Sbjct: 547 RDAQGNRTLREWPEGITL-CPSLTQLQIGSNDIRK-VNEKI--TPNISVLDIKDNPNISI 602
Query: 61 IPRDIGNLTSARALLLGNNNL 81
+ A +L +
Sbjct: 603 DLSYVCPYIEAGMYMLFYDKT 623
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 236 bits (605), Expect = 2e-70
Identities = 93/481 (19%), Positives = 160/481 (33%), Gaps = 40/481 (8%)
Query: 2 DFANNTLTGSLPDDMCQ--HLPRLQALDINNNHVTGPVPRNLWQCQ--ELIAISLSHNQL 57
N L SL + +C ++ L ++N+ ++ + L + LS+N L
Sbjct: 201 FLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNL 260
Query: 58 TGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLY 117
+ L L NN+ H + L N+ YL L+ + +
Sbjct: 261 NVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRS---------FTKQS 311
Query: 118 LERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSE 177
+ + L L + N G + L NL++L LS ++ + T
Sbjct: 312 ISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371
Query: 178 LSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP-EEIGNL 236
SL + L +++LT N++ I + L LE + + + +E L
Sbjct: 372 NETFVSLAH-SPLHILNLTKNKISKIESDAFSWL-GHLEVLDLGLNEIGQELTGQEWRGL 429
Query: 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEG--SIPDSLCNLGRLVELQFYD 294
N+ + L NK S + LQ L L + L+ S P L L L +
Sbjct: 430 ENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
N + + L L L L N L + G +
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHAN----------------PGGPIYFLK 533
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L + ++L N + V L L L N L + SL+ L+L
Sbjct: 534 GLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQK 593
Query: 415 NSFSGFIPRSFEKLLY-LEYLNLSFNRLKGEIPSGESFANFSDNS-----FMGNSFLCGS 468
N + + F L L++ FN S F N+ + + + + +LC +
Sbjct: 594 NLITSVEKKVFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHYLCNT 653
Query: 469 P 469
P
Sbjct: 654 P 654
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 233 bits (597), Expect = 2e-69
Identities = 97/511 (18%), Positives = 173/511 (33%), Gaps = 51/511 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D ++ LT +PDD+ + L++ +N + N + +L ++ + N ++ L
Sbjct: 10 DCSHLKLT-QVPDDL---PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLE 65
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH------SNLER 115
P L + L L +N L NL L L +N+ ++ NL
Sbjct: 66 PELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLIT 125
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN--LQWLDLSFNYLTS 173
L L N S T L L + N + N L+ L+LS N +
Sbjct: 126 LDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKE 185
Query: 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS--TSLEYIYMPYCRRSGRIPE 231
+ L + L QL L + TS+ + + + S
Sbjct: 186 FSPG-----CFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 232 EIGNL--INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVE 289
L NL + L N L S L +L+ +L N ++ SL L +
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRY 300
Query: 290 LQFYDN---------KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNF 340
L + L L L +L + N + + + F L ++ +
Sbjct: 301 LNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360
Query: 341 SSNSLNGS-------LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL 393
S++ + + L L + ++L++N +S L +L L N++
Sbjct: 361 SNSFTSLRTLTNETFVSLAHSPLHI---LNLTKNKISKIESDAFSWLGHLEVLDLGLNEI 417
Query: 394 QGSIP-ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452
+ + L ++ + LS N + SF + L+ L L LK S F
Sbjct: 418 GQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQ 477
Query: 453 NF--------SDNSFMG--NSFLCGSPNLQV 473
S+N+ + L G L++
Sbjct: 478 PLRNLTILDLSNNNIANINDDMLEGLEKLEI 508
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 8e-39
Identities = 57/274 (20%), Positives = 99/274 (36%), Gaps = 13/274 (4%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248
+ +V D + +L + +L T++ + + + + L ++ +G N
Sbjct: 5 SHEVADCSHLKLTQVPD----DLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNT 60
Query: 249 LTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKL 308
++ P KL L+ L L N+L + L EL N + K
Sbjct: 61 ISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQ 120
Query: 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV--VGIDLSR 366
L L L N L+ T + L ++ S+N + ++ ++LS
Sbjct: 121 KNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSS 180
Query: 367 NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD---LRSLEFLDLSNNSFSGFIPR 423
N + + P + L L +L S+ E L S+ L LSN+ S
Sbjct: 181 NQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT 240
Query: 424 SFEKLLY--LEYLNLSFNRLKGEIPSGESFANFS 455
+F L + L L+LS+N L SFA
Sbjct: 241 TFLGLKWTNLTMLDLSYNNLNVVGND--SFAWLP 272
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 219 bits (560), Expect = 1e-64
Identities = 93/514 (18%), Positives = 170/514 (33%), Gaps = 63/514 (12%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + + + D Q L L L + N + L + L L
Sbjct: 58 DLSRCEIQT-IEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 62 PRDIGNLTSARALLLGNNNLIG-EIPHEIGNLHNLEYLVLENNNFDGP------------ 108
IG+L + + L + +N + ++P NL NLE+L L +N
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 109 ---------------------RHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNS 146
+ L +L L N S + + L + +
Sbjct: 177 LLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGE 236
Query: 147 FSGT------IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200
F S + L NL + YL ++ N+ L +
Sbjct: 237 FRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDII--DLFNCLTNVSSFSLVSVTI 294
Query: 201 HGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKL 260
+ S + +++ + C+ ++ +L L G S L
Sbjct: 295 ERVKDFSY---NFGWQHLELVNCKFGQFPTLKLKSLKRLT-----FTSNKGGNAFSEVDL 346
Query: 261 QKLQGLYLYKNKL--EGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318
L+ L L +N L +G S L L N + + + L L +L
Sbjct: 347 PSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQH 405
Query: 319 NVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSI-PTV 376
+ L + S FLSLR+++ + S + L + + ++ N+ ++ P +
Sbjct: 406 SNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
Query: 377 IGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNL 436
L NL F L+ +L+ P + L SL+ L++S+N+F ++ L L+ L+
Sbjct: 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDY 525
Query: 437 SFNRLKGEIPSGESFANFSDN----SFMGNSFLC 466
S N + +F + + N F C
Sbjct: 526 SLNHIMTSKKQ--ELQHFPSSLAFLNLTQNDFAC 557
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 214 bits (548), Expect = 7e-63
Identities = 92/509 (18%), Positives = 155/509 (30%), Gaps = 45/509 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL- 60
N + L L LQ L ++ + + L ++++HN +
Sbjct: 82 ILTGNPIQS-LALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFK 140
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY----LVLENNNFDGP-----RHS 111
+P NLT+ L L +N + ++ LH + L L N + +
Sbjct: 141 LPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI 200
Query: 112 NLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGT------IPSTIANLRNLQWL 164
L +L L N S + + L + + F S + L NL
Sbjct: 201 RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260
Query: 165 DLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMP--- 221
+ YL ++ N+ L + + S LE +
Sbjct: 261 EFRLAYLDYYLDDII--DLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQ 318
Query: 222 -------------YCRRSGRIPEEIGNLINLITMSLGINKLT--GSIPISLGKLQKLQGL 266
+ G +L +L + L N L+ G S L+ L
Sbjct: 319 FPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYL 378
Query: 267 YLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVI 325
L N + + + L +L L F + L L L L +
Sbjct: 379 DLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 437
Query: 326 PSTFLSLRDILVFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384
F L + V + NS + DI L+ + +DLS+ L PT LS+L
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497
Query: 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY-LEYLNLSFNRLKG 443
++++N L SL+ LD S N + + L +LNL+ N
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557
Query: 444 EIPSGESFANFSDNSFM---GNSFLCGSP 469
D + C +P
Sbjct: 558 TCEHQSFLQWIKDQRQLLVEVERMECATP 586
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 192 bits (491), Expect = 9e-55
Identities = 75/452 (16%), Positives = 136/452 (30%), Gaps = 37/452 (8%)
Query: 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80
+ LD++ N + + + EL + LS ++ + +L+ L+L N
Sbjct: 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87
Query: 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNF-SGTIPSFIFN 133
+ L +L+ LV N L+ L + N S +P + N
Sbjct: 88 IQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSN 147
Query: 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQ----WLDLSFNYLTSSTSELSFLSSLRNCRN 189
+ L L + +N + + L + LDLS N + + +
Sbjct: 148 LTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF--IQPGAFKEI----R 201
Query: 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGR------IPEEIGNLINLITMS 243
L + L N + + LE + + L NL
Sbjct: 202 LHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEE 261
Query: 244 LGINKLTGS---IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGS 300
+ L I L + L +E S L+ + K
Sbjct: 262 FRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--YNFGWQHLELVNCKFGQF 319
Query: 301 IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN--GSLPLDIGNLKV 358
+ L L + + L + + S N L+ G
Sbjct: 320 PTLKLKSLKRLTFTSNKGG-----NAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTS 374
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES-LGDLRSLEFLDLSNNSF 417
+ +DLS N + ++ + GL L ++ L+ S LR+L +LD+S+
Sbjct: 375 LKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHT 433
Query: 418 SGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE 449
F L LE L ++ N +
Sbjct: 434 RVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 118 bits (299), Expect = 1e-28
Identities = 48/268 (17%), Positives = 87/268 (32%), Gaps = 18/268 (6%)
Query: 186 NCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245
N+ + I NL S + + + + + L + L
Sbjct: 6 VVPNITY-QCMELNFYKIPD----NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLS 60
Query: 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI 305
++ + L L L L N ++ + L L +L + L I
Sbjct: 61 RCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPI 120
Query: 306 GKLSPLRNLLLHSNVLTYV-IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLK----VVV 360
G L L+ L + N++ +P F +L ++ + SSN + D+ L + +
Sbjct: 121 GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180
Query: 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFSG 419
+DLS N ++ P + L +L N ++ + + L LE L F
Sbjct: 181 SLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
Query: 420 ------FIPRSFEKLLYLEYLNLSFNRL 441
F + E L L L
Sbjct: 240 EGNLEKFDKSALEGLCNLTIEEFRLAYL 267
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 88.2 bits (219), Expect = 1e-18
Identities = 26/141 (18%), Positives = 48/141 (34%), Gaps = 4/141 (2%)
Query: 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP 374
+ + S + + S N L + + +DLSR +
Sbjct: 13 QCMELNFYKIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69
Query: 375 TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYL 434
LS+L+ L N +Q + L SL+ L + + L L+ L
Sbjct: 70 GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKEL 129
Query: 435 NLSFNRLKGEIPSGESFANFS 455
N++ N ++ E F+N +
Sbjct: 130 NVAHNLIQS-FKLPEYFSNLT 149
|
| >3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 2e-18
Identities = 33/176 (18%), Positives = 65/176 (36%), Gaps = 12/176 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQ-CQELIAISLSHNQLTGL 60
D ++ + + L L+ L + N +++ + L + LS QL L
Sbjct: 427 DISHTHTRV-AFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQL 485
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-------SNL 113
P +L+S + L + +NN L++L+ L N+ + S+L
Sbjct: 486 SPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSL 545
Query: 114 ERLYLERNNFSGTIPS--FIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLS 167
L L +N+F+ T F+ L + PS + + L+++
Sbjct: 546 AFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMP-VLSLNIT 600
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 211 bits (539), Expect = 1e-61
Identities = 85/463 (18%), Positives = 155/463 (33%), Gaps = 24/463 (5%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + + +D Q RL L + N + L + L + ++ +
Sbjct: 63 DLTRCQIY-WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSID 121
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN--------FDGPRHSNL 113
+ N + +L LG+N++ + L+ L +NN + +
Sbjct: 122 FIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATN 181
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIAN--LRNLQWLDLSFNYL 171
L L N+ + I F+++ L I + N +++L
Sbjct: 182 LSLNLNGNDIA-GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDD 240
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231
+ + L +++ I+L + I ++ + L+ + + S +P
Sbjct: 241 EDISP--AVFEGLCEM-SVESINLQKHYFFNISSNTFHCF-SGLQELDLTATHLS-ELPS 295
Query: 232 EIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSI-PDSLCNLGRLVEL 290
+ L L + L NK IS L L + N + L NL L EL
Sbjct: 296 GLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLREL 355
Query: 291 QFYDNKL--FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348
+ + + LS L++L L N + F + + + + L
Sbjct: 356 DLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVK 415
Query: 349 LPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI---PESLGDL 404
NL ++ ++LS + L S + GL L +L N SL L
Sbjct: 416 DAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTL 475
Query: 405 RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
LE L LS S +F L + +++LS NRL
Sbjct: 476 GRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIE 518
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 206 bits (526), Expect = 1e-59
Identities = 89/458 (19%), Positives = 163/458 (35%), Gaps = 27/458 (5%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
F ++ S+ + L++L + +NH++ + ++L + +N + L
Sbjct: 111 FFIQTGIS-SIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLS 169
Query: 62 PRDIGNLTSARALLLG-NNNLIGEIPHEIGNLHNLEYLVLENNN--------FDGPRHSN 112
D+ +L A L L N N I I + + L +
Sbjct: 170 KEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQS 229
Query: 113 LERLYLERNNFSGTIPSFIFNASKLSI--LGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
L E + P+ ++S+ + ++ + F +T LQ LDL+ +
Sbjct: 230 LWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATH 289
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
L+ S L LK + L+ N+ + S N SL ++ + + +
Sbjct: 290 LSE------LPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLELG 342
Query: 231 EE-IGNLINLITMSLGINKLTGS--IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287
+ NL NL + L + + S + L L LQ L L N+ ++ +L
Sbjct: 343 TGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQL 402
Query: 288 VELQFYDNKLFGSIP-ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
L +L + L L+ L L ++L F L + N N
Sbjct: 403 ELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFP 462
Query: 347 GSLPLDIG---NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD 403
L + + LS +LS L + L++N+L S E+L
Sbjct: 463 KGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSH 522
Query: 404 LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L+ + +L+L++N S +P L +NL N L
Sbjct: 523 LKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPL 559
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 195 bits (497), Expect = 1e-55
Identities = 80/456 (17%), Positives = 150/456 (32%), Gaps = 22/456 (4%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
N L +P + + L+ + N + + L + L+ Q+ +
Sbjct: 21 NLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDT 76
Query: 65 IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG------PRHSNLERLYL 118
+ L+L N LI + L++L LE LYL
Sbjct: 77 FQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYL 136
Query: 119 ERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178
N+ S F KL +L + N+ +++L+ L L+ N +
Sbjct: 137 GSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA---- 192
Query: 179 SFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS-TSLEYIYMPYCRRSGRIPEEIGNL- 236
+ + ++ G Q ++ + N + SL P L
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252
Query: 237 -INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295
+++ +++L + + LQ L L L +P L L L +L N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311
Query: 296 KLFGSIPACIGKLSPLRNLLLHSNVL-TYVIPSTFLSLRDILVFNFSSNSLNGS--LPLD 352
K L +L + N + +L ++ + S + + S L
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQ 371
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES-LGDLRSLEFLD 411
+ NL + ++LS N L LA+ +L+ +S +L L+ L+
Sbjct: 372 LRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLN 431
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
LS++ + F+ L L++LNL N
Sbjct: 432 LSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQ 467
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 1e-22
Identities = 40/260 (15%), Positives = 65/260 (25%), Gaps = 31/260 (11%)
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT 250
K + L+ I L S E + + LINL + L ++
Sbjct: 15 KTYNCENLGLNEIPG----TLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY 70
Query: 251 GSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSP 310
+ +L L L N L +L L L F + +
Sbjct: 71 WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKT 130
Query: 311 LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS 370
L +L L SN ++ + LKV +D N +
Sbjct: 131 LESLYLGSNHISSIKLPKGFPTE---------------------KLKV---LDFQNNAIH 166
Query: 371 DSIPTVIGGLSNLAFFSLAYNKLQ-GSIPESLGDLRSLEFLDLSNNSFSGFIPR--SFEK 427
+ L SL N I D + L+ I +
Sbjct: 167 YLSKEDMSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNST 226
Query: 428 LLYLEYLNLSFNRLKGEIPS 447
+ L + P+
Sbjct: 227 IQSLWLGTFEDMDDEDISPA 246
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 2e-20
Identities = 40/207 (19%), Positives = 61/207 (29%), Gaps = 5/207 (2%)
Query: 266 LYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325
L IP +L N L+F N L +L L L L + ++
Sbjct: 17 YNCENLGLN-EIPGTLPNS--TECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73
Query: 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAF 385
TF S + ++N L + K + + + +S + L
Sbjct: 74 EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLES 133
Query: 386 FSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL--LYLEYLNLSFNRLKG 443
L N + L+ LD NN+ L LNL+ N + G
Sbjct: 134 LYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAG 193
Query: 444 EIPSGESFANFSDNSFMGNSFLCGSPN 470
P A F +F G L
Sbjct: 194 IEPGAFDSAVFQSLNFGGTQNLLVIFK 220
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 209 bits (533), Expect = 3e-59
Identities = 66/459 (14%), Positives = 139/459 (30%), Gaps = 51/459 (11%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
N +T + + + L +LQ + N+ T + + + +
Sbjct: 434 TNRIT-FISKAIQR-LTKLQIIYFANSPFTYDNI-----AVDWEDANSDYAKQYENEELS 486
Query: 65 IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFS 124
NL + L N + ++P + +L L+ L + N +
Sbjct: 487 WSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISA---------AQLKADW 537
Query: 125 GTIPSFIFNASKLSILGIRTNSFSGTIPS-TIANLRNLQWLDLSFNYLTSSTSELSFLSS 183
+ K+ I + N+ S ++ + L LD N + L +
Sbjct: 538 TRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRH-------LEA 590
Query: 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE--EIGNLINLIT 241
L + L NQ+ I P + +E + + + IP ++ + +
Sbjct: 591 FGTNVKLTDLKLDYNQIEEI-PEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGS 648
Query: 242 MSLGINKLTG-----SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296
+ NK+ S + K + L N+++ + + + +N
Sbjct: 649 VDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNL 708
Query: 297 L-------FGSIPACIGKLSPLRNLLLHSNVLTYVIPS-TFLSLRDILVFNFSSNSLNGS 348
+ L + L N LT + +L + + S N + S
Sbjct: 709 MTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSNMDVSYNCFS-S 767
Query: 349 LPLDIGNLKVVVGIDLSR------NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLG 402
P N + + N + PT I +L + N ++ + E L
Sbjct: 768 FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL- 825
Query: 403 DLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L LD+++N S + L +++
Sbjct: 826 -TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 208 bits (531), Expect = 4e-59
Identities = 82/481 (17%), Positives = 156/481 (32%), Gaps = 43/481 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG-- 59
F ++ T S + L + + + L Q L L + +
Sbjct: 353 SFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNP 412
Query: 60 -LIPRDIGNLTSARALLLGN-NNLIGEIPHEIGNLHNLEYLVLENNNFDG-PRHSNLERL 116
+ P + S + +GN N I I I L L+ + N+ F + E
Sbjct: 413 EMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDA 472
Query: 117 YLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS 176
+ N L+ + + +P + +L LQ L+++ N S+
Sbjct: 473 NSDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQ 532
Query: 177 ELSFLSSL----RNCRNLKVIDLTGNQLHGILPS-SMGNLSTSLEYIYMPYCRRSGRIPE 231
+ + L +++ + N L S S+ + L + + + E
Sbjct: 533 LKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKM-VKLGLLDCVHNKVR--HLE 589
Query: 232 EIGNLINLITMSLGINKLTGSIPISLGK-LQKLQGLYLYKNKLEGSIPD--SLCNLGRLV 288
G + L + L N++ IP +++GL NKL+ IP+ + ++ +
Sbjct: 590 AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMG 647
Query: 289 ELQFYDNKLFGSIPACIG------KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342
+ F NK+ GS I K + L N + F + I S+
Sbjct: 648 SVDFSYNKI-GSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSN 706
Query: 343 NSL-------NGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI--GGLSNLAFFSLAYNKL 393
N + + N ++ IDL N L+ S+ L L+ ++YN
Sbjct: 707 NLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCF 765
Query: 394 QGSIPESLGDLRSLEFLDL------SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
S P + L+ + N P L L + N ++ ++
Sbjct: 766 S-SFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDE 823
Query: 448 G 448
Sbjct: 824 K 824
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 207 bits (527), Expect = 2e-58
Identities = 80/470 (17%), Positives = 153/470 (32%), Gaps = 52/470 (11%)
Query: 10 GSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLT 69
G P + R+ L + G VP + Q EL +S + T
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371
Query: 70 SARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPS 129
+ + + L + L S+L + + RN I
Sbjct: 372 TPDMSEERKHRIRMHYKKMF--LDYDQRL----------NLSDLLQDAINRNPEMKPIKK 419
Query: 130 FIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRN 189
+ K + +G TN + I I L LQ + + + T + +
Sbjct: 420 DSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAV----------D 468
Query: 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKL 249
+ + + + S NL L + + C ++P+ + +L L ++++ N+
Sbjct: 469 WEDANSDYAKQYENEELSWSNL-KDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRG 527
Query: 250 TG---------SIPISLGKLQKLQGLYLYKNKLEG-SIPDSLCNLGRLVELQFYDNKLFG 299
+ K+Q Y+ N LE SL + +L L NK+
Sbjct: 528 ISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV-R 586
Query: 300 SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP--LDIGNLK 357
+ A G L +L L N + + + FS N L +P + ++
Sbjct: 587 HLEA-FGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVY 644
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLS-----NLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412
V+ +D S N + + + N + +L+YN++Q E + + L
Sbjct: 645 VMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIIL 704
Query: 413 SNNSFS-------GFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
SNN + +++ L ++L FN+L +
Sbjct: 705 SNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP 753
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 1e-38
Identities = 52/345 (15%), Positives = 102/345 (29%), Gaps = 19/345 (5%)
Query: 119 ERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178
E + + + N +++ L + G +P I L L+ L + T S
Sbjct: 307 ELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLF 366
Query: 179 SFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN 238
+ + + + L + L + I ++ +
Sbjct: 367 GDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLK 426
Query: 239 LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLF 298
+ N++T I ++ +L KLQ +Y + K +
Sbjct: 427 DTQIGNLTNRIT-FISKAIQRLTKLQIIYFANSPFTYDNIAVDWED-----ANSDYAKQY 480
Query: 299 GSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG---------SL 349
+ L L ++ L++ +P L ++ N + N L
Sbjct: 481 ENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRL 540
Query: 350 PLDIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
D + + NNL + + + L +NK+ E+ G L
Sbjct: 541 ADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKV--RHLEAFGTNVKLT 598
Query: 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
L L N +E L S N+LK IP+ + +
Sbjct: 599 DLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKS 642
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 142 bits (360), Expect = 3e-36
Identities = 57/323 (17%), Positives = 98/323 (30%), Gaps = 40/323 (12%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
N L Q + +L LD +N V +L + L +NQ+ I
Sbjct: 554 YMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR--HLEAFGTNVKLTDLKLDYNQIEE-I 610
Query: 62 PRDIGNLTSA-RALLLGNNNLIGEIPH--EIGNLHNLEYLVLENNNFDGP---------- 108
P D T L +N L IP+ +++ + + N
Sbjct: 611 PEDFCAFTDQVEGLGFSHNKL-KYIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDD 669
Query: 109 -RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFS-------GTIPSTIANLRN 160
+ N + L N S +S + + N + N
Sbjct: 670 YKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNYKNTYL 729
Query: 161 LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
L +DL FN LTS + + L +D++ N P+ N + L+ +
Sbjct: 730 LTTIDLRFNKLTSLSDDFRA----TTLPYLSNMDVSYNCFSSF-PTQPLNS-SQLKAFGI 783
Query: 221 PYC------RRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLE 274
+ R + P I +LI + +G N + + L +L L + N
Sbjct: 784 RHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKL--TPQLYILDIADNPNI 840
Query: 275 GSIPDSLCNLGRLVELQFYDNKL 297
S+C +K
Sbjct: 841 SIDVTSVCPYIEAGMYVLLYDKT 863
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876 | Back alignment and structure |
|---|
Score = 117 bits (294), Expect = 6e-28
Identities = 38/244 (15%), Positives = 83/244 (34%), Gaps = 14/244 (5%)
Query: 220 MPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
+ ++ N + +SL G +P ++G+L +L+ L + S
Sbjct: 306 KELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRL 365
Query: 280 SLCN-------LGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
R ++ + K+F + L++ + + + + + +SL
Sbjct: 366 FGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISL 425
Query: 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392
+D +N + + I L + I + + + V +N Y K
Sbjct: 426 KD-TQIGNLTNRI-TFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSD-----YAK 478
Query: 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452
+ S +L+ L ++L N +P L L+ LN++ NR +
Sbjct: 479 QYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWT 538
Query: 453 NFSD 456
+D
Sbjct: 539 RLAD 542
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 186 bits (473), Expect = 3e-52
Identities = 83/463 (17%), Positives = 139/463 (30%), Gaps = 38/463 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTGL 60
L SL L L+ L++ +N + +P L+ + LS+N + +
Sbjct: 110 VAVETKLA-SLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168
Query: 61 IPRDIGNLTSARALLLG---NNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH------- 110
D+ L + L + N I I + L L L N
Sbjct: 169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNL 228
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILG--------IRTNSFSGTIPSTIANLRNLQ 162
+ L L F IF S + L + + L N+
Sbjct: 229 AGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVS 288
Query: 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPY 222
+ L+ + L + + + + QL + L+ + +
Sbjct: 289 AMSLAGVSIKY-------LEDVPKHFKWQSLSIIRCQLKQFPTLDL----PFLKSLTLTM 337
Query: 223 CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISL--GKLQKLQGLYLYKNKLEGSIPDS 280
+ G I + L +L + L N L+ S S L+ L L N + +
Sbjct: 338 NK--GSISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSAN 394
Query: 281 LCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFN 339
L L L F + L L L L + FL L +
Sbjct: 395 FMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLK 454
Query: 340 FSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
+ NS + ++ N + +DLS+ L V L L ++++N L
Sbjct: 455 MAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDS 514
Query: 399 ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L SL LD S N L + NL+ N +
Sbjct: 515 SHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 182 bits (463), Expect = 7e-51
Identities = 88/464 (18%), Positives = 151/464 (32%), Gaps = 28/464 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + N L + LQ LD++ + + L + L+ N +
Sbjct: 38 DLSFNPLKILKSYSF-SNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFS 96
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-------SNLE 114
P LTS L+ L IG L L+ L + +N + +NL
Sbjct: 97 PGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLV 156
Query: 115 RLYLERNNFSGTIPSFIFNASKLSI----LGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
+ L N + + + L + N + L L L N+
Sbjct: 157 HVDLSYNYIQTITVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNF 215
Query: 171 LTSSTSELSF--LSSLRNCRNLKVIDLTGNQLHGILPSSMGNL-STSLEYIYMPYCRRSG 227
+S+ + L+ L R + L PS M L +++ + Y
Sbjct: 216 NSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFS 275
Query: 228 RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287
+ L N+ MSL + + K K Q L + + +L+ P +L L
Sbjct: 276 DDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLK-QFPTL--DLPFL 330
Query: 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTF--LSLRDILVFNFSSNSL 345
L NK SI L L L L N L++ ++ L + + S N
Sbjct: 331 KSLTLTMNKG--SISFKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGA 388
Query: 346 NGSLPLDIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDL 404
+ + L+ + +D + L L L + ++Y + L
Sbjct: 389 I-IMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGL 447
Query: 405 RSLEFLDLSNNSFSGFIPRS-FEKLLYLEYLNLSFNRLKGEIPS 447
SL L ++ NSF + F L +L+LS +L+
Sbjct: 448 TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 164 bits (418), Expect = 2e-44
Identities = 89/497 (17%), Positives = 166/497 (33%), Gaps = 61/497 (12%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ L+ +PDD+ + +D++ N + + EL + LS ++ +
Sbjct: 17 QCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIE 72
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERN 121
+ L L+L N + P L +LE LV
Sbjct: 73 DKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVE------------------T 114
Query: 122 NFSGTIPSFIFNASKLSILGIRTNSFSG-TIPSTIANLRNLQWLDLSFNYLTS-STSELS 179
+ I L L + N +P+ +NL NL +DLS+NY+ + + ++L
Sbjct: 115 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQ 174
Query: 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE-IGNLIN 238
FL +D++ N + I + + L + + S I + + NL
Sbjct: 175 FLRENPQ--VNLSLDMSLNPIDFIQDQAFQGI--KLHELTLRGNFNSSNIMKTCLQNLAG 230
Query: 239 LITMSLGINKLTGSIPISLGKLQKLQGL--------YLYKNKLEGSIPDSLCNLGRLVEL 290
L L + + + + + ++GL L L + +
Sbjct: 231 LHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAM 290
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
+ + K ++L + L L+ + + N S+
Sbjct: 291 SLAGVSI--KYLEDVPKHFKWQSLSIIRCQLKQFPTLDLPFLKSL---TLTMNKG--SIS 343
Query: 351 LDIGNLKVVVGIDLSRNNLSDSIPTV--IGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
L + +DLSRN LS S G ++L L++N + + L L+
Sbjct: 344 FKKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQ 402
Query: 409 FLDLSNNSFSGFIPRS-FEKLLYLEYLNLSFNRLKGEIPSGESFANF--------SDNSF 459
LD +++ S F L L YL++S+ K + F + NSF
Sbjct: 403 HLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFD--GIFLGLTSLNTLKMAGNSF 460
Query: 460 MGNS---FLCGSPNLQV 473
N+ + NL
Sbjct: 461 KDNTLSNVFANTTNLTF 477
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606 | Back alignment and structure |
|---|
Score = 88.9 bits (221), Expect = 7e-19
Identities = 35/157 (22%), Positives = 56/157 (35%), Gaps = 5/157 (3%)
Query: 299 GSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKV 358
GS+ CI + + L+ V S + + S N L N
Sbjct: 2 GSLNPCIEVVPNIT-YQCMDQKLSKVPDDIPSSTK---NIDLSFNPLKILKSYSFSNFSE 57
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418
+ +DLSR + GL +L+ L N +Q P S L SLE L +
Sbjct: 58 LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117
Query: 419 GFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
+L+ L+ LN++ N + F+N +
Sbjct: 118 SLESFPIGQLITLKKLNVAHNFIHS-CKLPAYFSNLT 153
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 169 bits (429), Expect = 3e-45
Identities = 84/476 (17%), Positives = 164/476 (34%), Gaps = 47/476 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLT--G 59
+ + ++ + ++LP L+ LD+ ++ + P L + L L+
Sbjct: 54 ELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAV 113
Query: 60 LIPRDIGNLTSARALLLGNNNLIG-EIPHEIGNLHNLEYLVLENNN--------FDGPRH 110
L NL + L L N + + G L++L+ + +N + +
Sbjct: 114 LKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQG 173
Query: 111 SNLERLYLERNNFSGTIPSFIF------------------NASKLSILGIRTNSFSGTIP 152
L L N+ + N + I G +N+ S +
Sbjct: 174 KTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQA 233
Query: 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212
++ ++ F+ + + + L +++ +DL+ + + L
Sbjct: 234 FSLILAHHIMGAGFGFHNIKDPDQ--NTFAGLAR-SSVRHLDLSHGFVFSLNSRVFETL- 289
Query: 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
L+ + + Y + + E L NL ++L N L + L K+ + L KN
Sbjct: 290 KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNH 349
Query: 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
+ + L +L L DN L I + + ++ L N L + +
Sbjct: 350 IAIIQDQTFKFLEKLQTLDLRDNAL-----TTIHFIPSIPDIFLSGNKLVTLPKINLTAN 404
Query: 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYN 391
L N N L + +L++ + L++N S S +L L N
Sbjct: 405 LIHLSENRLENLDILYFLLRVPHLQI---LILNQNRFSSCSGDQTPSENPSLEQLFLGEN 461
Query: 392 KLQGSI-----PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
LQ + + L L+ L L++N + P F L L L+L+ NRL
Sbjct: 462 MLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT 517
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 156 bits (396), Expect = 5e-41
Identities = 92/514 (17%), Positives = 163/514 (31%), Gaps = 55/514 (10%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRN-LWQCQELIAISLSHNQLTGL 60
+ N + ++ L +LQ L++ + + + + L + L +++ L
Sbjct: 30 LLSFNYIR-TVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFL 88
Query: 61 IPRDIGNLTSARALLLGNNNLIGEI--PHEIGNLHNLEYLVLENNNFDG-------PRHS 111
P L L L L + NL L L L N + +
Sbjct: 89 HPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLN 148
Query: 112 NLERLYLERNNFSGTIPSFIFN---ASKLSILGIRTNSFSGTIPSTIANLRN------LQ 162
+L+ + N + LS + NS + N L+
Sbjct: 149 SLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLE 207
Query: 163 WLDLSFNYLTSSTSELSF-------LSSLRNCRNLKVIDLTGNQLHGILPSSMGNL-STS 214
LD+S N T + SL ++ + + ++ L +S
Sbjct: 208 ILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSS 267
Query: 215 LEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLE 274
+ ++ + + L +L ++L NK+ + L LQ L L N L
Sbjct: 268 VRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLG 327
Query: 275 GSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334
+ L ++ + N + L L+ L L N LT T +
Sbjct: 328 ELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPS 382
Query: 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYNKL 393
I S N L +++ I LS N L + I + + +L L N+
Sbjct: 383 IPDIFLSGNKLVTLPKINLTANL----IHLSENRLENLDILYFLLRVPHLQILILNQNRF 438
Query: 394 QGSIPESL-GDLRSLEFLDLSNNSF-----SGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
+ + SLE L L N + FE L +L+ L L+ N L +P
Sbjct: 439 SSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLN-SLPP 497
Query: 448 GESFANF--------SDNSFMGNSFLCGSPNLQV 473
G F++ + N S NL++
Sbjct: 498 G-VFSHLTALRGLSLNSNRLTVLSHNDLPANLEI 530
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 6e-37
Identities = 79/418 (18%), Positives = 133/418 (31%), Gaps = 73/418 (17%)
Query: 37 VPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNL 95
VP+ L + LS N + + L + L LG+ I E NL NL
Sbjct: 19 VPQVL---NTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNL 75
Query: 96 EYLVLENNN--------FDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSF 147
L L ++ F G +L L L S +
Sbjct: 76 RILDLGSSKIYFLHPDAFQGL--FHLFELRLYFCGLSDAVLK------------------ 115
Query: 148 SGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
NL+ L LDLS N + S L S +LK ID + NQ+ +
Sbjct: 116 ----DGYFRNLKALTRLDLSKNQIRS----LYLHPSFGKLNSLKSIDFSSNQIFLVCEHE 167
Query: 208 MGNLS-TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266
+ L +L + + R+ + G +N + L+ L
Sbjct: 168 LEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPF------------------RNMVLEIL 209
Query: 267 YLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP 326
+ N I + N + S + + + +
Sbjct: 210 DVSGNGWTVDITGNFSNA------------ISKSQAFSLILAHHIMGAGFGFHNIKDPDQ 257
Query: 327 STFLSLRD--ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384
+TF L + + S + LK + ++L+ N ++ GL NL
Sbjct: 258 NTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317
Query: 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
+L+YN L + L + ++DL N + ++F+ L L+ L+L N L
Sbjct: 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT 375
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 136 bits (343), Expect = 3e-34
Identities = 91/472 (19%), Positives = 166/472 (35%), Gaps = 48/472 (10%)
Query: 2 DFANNTLT-GSLPDDMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTG 59
L+ L D ++L L LD++ N + + + + L +I S NQ+
Sbjct: 103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162
Query: 60 LIPRDIGNLTSA--RALLLGNNNLIGEIPHEIGNLHN-LEYLVLENNNFDGPRHSNLERL 116
+ ++ L L N+L + + G N +VLE + G +
Sbjct: 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDI-T 221
Query: 117 YLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLR--NLQWLDLSFNYLTSS 174
N S + + A + G ++ +T A L +++ LDLS ++ S
Sbjct: 222 GNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSL 281
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234
S ++LKV++L N+++ I + L +L+ + + Y
Sbjct: 282 NS-----RVFETLKDLKVLNLAYNKINKIADEAFYGL-DNLQVLNLSYNLLGELYSSNFY 335
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
L + + L N + + L+KLQ L L N L ++ + + ++
Sbjct: 336 GLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALT-----TIHFIPSIPDIFLSG 390
Query: 295 NKLFG---------------------SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS-L 332
NKL I + ++ L+ L+L+ N + S
Sbjct: 391 NKLVTLPKINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSEN 450
Query: 333 RDILVFNFSSNSLNGSLPLDI-----GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+ N L + ++ L + + L+ N L+ P V L+ L S
Sbjct: 451 PSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLS 510
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L N+L L +LE LD+S N P F L L+ + F
Sbjct: 511 LNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVSLSVLDITHNKFI 560
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 4e-24
Identities = 73/369 (19%), Positives = 137/369 (37%), Gaps = 28/369 (7%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D ++ + SL + + L L+ L++ N + + L ++LS+N L L
Sbjct: 272 DLSHGFVF-SLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELY 330
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF-DGPRHSNLERLYLER 120
+ L + L N++ L L+ L L +N ++ ++L
Sbjct: 331 SSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSG 390
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSF 180
N T+P A+ + + R + I + + +LQ L L+ N +S + + +
Sbjct: 391 NKLV-TLPKINLTANLIHLSENRLENLD--ILYFLLRVPHLQILILNQNRFSSCSGDQTP 447
Query: 181 LSSLRNCRNLKVIDLTGNQLHGI----LPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNL 236
+L+ + L N L L + + L+ +Y+ + + P +L
Sbjct: 448 ----SENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHL 503
Query: 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296
L +SL N+LT L L+ L + +N+L PD + L L NK
Sbjct: 504 TALRGLSLNSNRLTVLSHNDL--PANLEILDISRNQLLAPNPDVFVS---LSVLDITHNK 558
Query: 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTF-----LSLRDILVFNFSSNSLNGSLPL 351
C +LS N L H+NV P+ S + +F+ S+ + L
Sbjct: 559 F-----ICECELSTFINWLNHTNVTIAGPPADIYCVYPDSFSGVSLFSLSTEGCDEEEVL 613
Query: 352 DIGNLKVVV 360
+ +
Sbjct: 614 KSLKFSLFI 622
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 162 bits (413), Expect = 3e-44
Identities = 93/497 (18%), Positives = 167/497 (33%), Gaps = 55/497 (11%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + + ++ D Q L L L + N + L + L L
Sbjct: 58 DLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 62 PRDIGNLTSARALLLGNNNL-IGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLE------ 114
IG+L + + L + +N + ++P NL NLE+L L +N ++L
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 115 ----RLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST-IANLRNLQWLDLSFN 169
L L N + I F +L L +R N S + T I L L+ L
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLG 235
Query: 170 YLTS----------------------------STSELSFLSSLRNCRNLKVIDLTGNQLH 201
+ + N+ L +
Sbjct: 236 EFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE 295
Query: 202 GILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQ 261
+ S LE + + + P L +L ++ NK + S L
Sbjct: 296 RVKDFSYNFGWQHLELVNCKFGQ----FPT--LKLKSLKRLTFTSNKGGNAF--SEVDLP 347
Query: 262 KLQGLYLYKNKLE--GSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSN 319
L+ L L +N L G S L L N + ++ + L L +L +
Sbjct: 348 SLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHS 406
Query: 320 VLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT-VI 377
L + S FLSLR+++ + S + L + + ++ N+ ++ +
Sbjct: 407 NLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIF 466
Query: 378 GGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437
L NL F L+ +L+ P + L SL+ L++++N F++L L+ + L
Sbjct: 467 TELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLH 526
Query: 438 FNRLKGEIPSGESFANF 454
N P + + +
Sbjct: 527 TNPWDCSCPRIDYLSRW 543
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 3e-43
Identities = 101/479 (21%), Positives = 171/479 (35%), Gaps = 43/479 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + N L L P LQ LD++ + L + L+ N + L
Sbjct: 34 DLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLA 92
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF-DGPRH------SNLE 114
L+S + L+ NL IG+L L+ L + +N +NLE
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLE 152
Query: 115 RLYLERNNFSGTIPSFIFNASKLSILGIR----TNSFSGTIPSTIANLRNLQWLDLSFNY 170
L L N + + ++ +L + N + I L L L N+
Sbjct: 153 HLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHKLTLRNNF 211
Query: 171 LTSSTSELSF--LSSLRNCRNLKVIDLTGNQLHGILPSSMGNLST-SLEYIYMPYCRRSG 227
+ + + L+ L R + L S++ L ++E + Y
Sbjct: 212 DSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYL 271
Query: 228 R-IPEEIGNLINLITMSLGINKLTGSIP-------------------ISLGKLQKLQGLY 267
I + L N+ + SL + KL+ L+ L
Sbjct: 272 DDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLT 331
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKL--FGSIPACIGKLSPLRNLLLHSNVLTYVI 325
NK + S +L L L N L G + L+ L L N + +
Sbjct: 332 FTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-M 388
Query: 326 PSTFLSLRDILVFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384
S FL L + +F ++L + +L+ ++ +D+S + + + GLS+L
Sbjct: 389 SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLE 448
Query: 385 FFSLAYNKLQGSI-PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
+A N Q + P+ +LR+L FLDLS P +F L L+ LN++ N+LK
Sbjct: 449 VLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLK 507
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 1e-32
Identities = 83/441 (18%), Positives = 152/441 (34%), Gaps = 57/441 (12%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82
+ LD++ N + + + EL + LS ++ + +L+ L+L N +
Sbjct: 30 TKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89
Query: 83 GEIPHEIGNLHNLEYLVLENNNFDG------PRHSNLERLYLERNNFSGTIPSFIFNASK 136
L +L+ LV N L+ L + N
Sbjct: 90 SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ------------ 137
Query: 137 LSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS-STSELSFLSSLRNCRNLKVIDL 195
S +P +NL NL+ LDLS N + S ++L L + +DL
Sbjct: 138 -----------SFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL--LNLSLDL 184
Query: 196 TGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE-IGNLINLITMSLGINKLTGSIP 254
+ N ++ I P + + L + + S + + I L L L + +
Sbjct: 185 SLNPMNFIQPGAFKEI--RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242
Query: 255 IS------LGKLQKLQGLYLYKNKLEGS---IPDSLCNLGRLVELQFYDNKLFGSIPACI 305
+ L L L L+ I D L + + +
Sbjct: 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTI-ERVKDFS 301
Query: 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDL 364
++L L + L L+ + F+SN + +D+ +L+ +DL
Sbjct: 302 YNFG-WQHLELVNCKFGQF---PTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEF---LDL 354
Query: 365 SRNNLS--DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422
SRN LS G ++L + L++N + ++ + L LE LD +++
Sbjct: 355 SRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSE 413
Query: 423 RS-FEKLLYLEYLNLSFNRLK 442
S F L L YL++S +
Sbjct: 414 FSVFLSLRNLIYLDISHTHTR 434
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 89.4 bits (222), Expect = 4e-19
Identities = 49/287 (17%), Positives = 88/287 (30%), Gaps = 45/287 (15%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ T+ L+ ++ + + L ++ + N+
Sbjct: 287 FSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPT------LKLKSLKRLTFTSNKGGNA 340
Query: 61 IPRDIGNLTSARALLLGNNNL--IGEIPHEIGNLHNLEYLVLENNNFDG-----PRHSNL 113
+L S L L N L G +L+YL L N L
Sbjct: 341 FSEV--DLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQL 398
Query: 114 ERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
E L + +N +F + L L I L +L+ L ++ N
Sbjct: 399 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQ 458
Query: 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
+ F RNL +DL+ QL + P++ +LS
Sbjct: 459 ENFLPDIF----TELRNLTFLDLSQCQLEQLSPTAFNSLS-------------------- 494
Query: 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
+L +++ N+L +L LQ ++L+ N + S P
Sbjct: 495 -----SLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 536
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 87.8 bits (218), Expect = 1e-18
Identities = 45/221 (20%), Positives = 75/221 (33%), Gaps = 9/221 (4%)
Query: 229 IPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288
IP+ + + + L N L S +LQ L L + +++ + +L L
Sbjct: 22 IPDNLPF--STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLS 79
Query: 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN-G 347
L N + LS L+ L+ L + L+ + N + N +
Sbjct: 80 TLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSF 139
Query: 348 SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF----SLAYNKLQGSIPESLGD 403
LP NL + +DLS N + T + L + L+ N + I
Sbjct: 140 KLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFK 198
Query: 404 LRSLEFLDLSNNSFSGFIPR-SFEKLLYLEYLNLSFNRLKG 443
L L L NN S + + + L LE L +
Sbjct: 199 EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRN 239
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570 | Back alignment and structure |
|---|
Score = 74.0 bits (182), Expect = 4e-14
Identities = 26/140 (18%), Positives = 48/140 (34%), Gaps = 4/140 (2%)
Query: 316 LHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375
+ + S + + S N L + + +DLSR +
Sbjct: 14 CMELNFYKIPDNLPFSTK---NLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDG 70
Query: 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLN 435
LS+L+ L N +Q + L SL+ L + + L L+ LN
Sbjct: 71 AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130
Query: 436 LSFNRLKGEIPSGESFANFS 455
++ N ++ E F+N +
Sbjct: 131 VAHNLIQ-SFKLPEYFSNLT 149
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 160 bits (406), Expect = 8e-44
Identities = 100/445 (22%), Positives = 170/445 (38%), Gaps = 44/445 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+T ++ L ++ L + + + L I+ S+NQLT +
Sbjct: 30 VLGKTNVTDTVSQT---DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDIT 84
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH----SNLERLY 117
P + NLT +L+ NN + P + NL NL L L NN +NL RL
Sbjct: 85 P--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDIDPLKNLTNLNRLE 140
Query: 118 LERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSE 177
L N S S + + L L T +ANL L+ LD+S N ++
Sbjct: 141 LSSNTISD--ISALSGLTSLQQLSFGNQV---TDLKPLANLTTLERLDISSNKVSD---- 191
Query: 178 LSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237
+S L NL+ + T NQ+ I + +G L T+L+ + + + + +L
Sbjct: 192 ---ISVLAKLTNLESLIATNNQISDI--TPLGIL-TNLDELSLNGNQLKD--IGTLASLT 243
Query: 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297
NL + L N+++ P L L KL L L N++ P L L L L+ +N+L
Sbjct: 244 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQL 299
Query: 298 FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLK 357
P I L L L L+ N ++ + P SL + F +N ++ L NL
Sbjct: 300 EDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDVSSL--ANLT 353
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417
+ + N +SD P + L+ + L + ++ + +
Sbjct: 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGAL 411
Query: 418 SGFIPRSFEKLLYLEYLNLSFNRLK 442
P + ++++N
Sbjct: 412 I--APATISDGGSYTEPDITWNLPS 434
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 155 bits (394), Expect = 4e-42
Identities = 91/433 (21%), Positives = 160/433 (36%), Gaps = 65/433 (15%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78
L + +VT V ++ + + + + L + + N
Sbjct: 22 ALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSIDG--VEYLNNLTQINFSN 77
Query: 79 NNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH----SNLERLYLERNNFSGTIPSFIFNA 134
N L P + NL L +++ NN +NL L L N + P + N
Sbjct: 78 NQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDP--LKNL 133
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
+ L+ L + +N+ S S ++ L +LQ L ++ L L N L+ +D
Sbjct: 134 TNLNRLELSSNTISD--ISALSGLTSLQQLSFGNQ--------VTDLKPLANLTTLERLD 183
Query: 195 LTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254
++ N++ I + L NL ++ N+++ P
Sbjct: 184 ISSNKVSDI---------------------------SVLAKLTNLESLIATNNQISDITP 216
Query: 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL 314
LG L L L L N+L+ +L +L L +L +N++ P + L+ L L
Sbjct: 217 --LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTEL 270
Query: 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP 374
L +N ++ + P L + + N L P I NLK + + L NN+SD P
Sbjct: 271 KLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP 326
Query: 375 TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYL 434
+ L+ L NK+ S SL +L ++ +L +N S P L + L
Sbjct: 327 --VSSLTKLQRLFFYNNKV--SDVSSLANLTNINWLSAGHNQISDLTP--LANLTRITQL 380
Query: 435 NLSFNRLKGEIPS 447
L+ +
Sbjct: 381 GLNDQAWTNAPVN 393
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 8e-36
Identities = 94/404 (23%), Positives = 152/404 (37%), Gaps = 39/404 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
NN + P +L L L + NN +T P L L + LS N ++ +
Sbjct: 96 LMNNNQIADITPL---ANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDIS 150
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH----SNLERLY 117
+ LTS + L N + P + NL LE L + +N +NLE L
Sbjct: 151 A--LSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDISSNKVSDISVLAKLTNLESLI 205
Query: 118 LERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSE 177
N S P + + L L + N T+A+L NL LDL+ N +++
Sbjct: 206 ATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISN---- 257
Query: 178 LSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237
L+ L L + L NQ+ I S + L T+L + + + I NL
Sbjct: 258 ---LAPLSGLTKLTELKLGANQISNI--SPLAGL-TALTNLELNENQLED--ISPISNLK 309
Query: 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297
NL ++L N ++ P+S L KLQ L+ Y NK+ SL NL + L N++
Sbjct: 310 NLTYLTLYFNNISDISPVS--SLTKLQRLFFYNNKVSD--VSSLANLTNINWLSAGHNQI 365
Query: 298 FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLK 357
P + L+ + L L+ T + ++ + + + P I +
Sbjct: 366 SDLTP--LANLTRITQLGLNDQAWTNAPVNYKANVS--IPNTVKNVTGALIAPATISDGG 421
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL 401
D++ N S V S G++ + L
Sbjct: 422 SYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466 | Back alignment and structure |
|---|
Score = 116 bits (293), Expect = 2e-28
Identities = 81/340 (23%), Positives = 127/340 (37%), Gaps = 41/340 (12%)
Query: 153 STIANLRNLQWLDLSFNYLTSSTS---------------ELSFLSSLRNCRNLKVIDLTG 197
T L L +T + S + + + NL I+ +
Sbjct: 18 FTDTALAEKMKTVLGKTNVTDTVSQTDLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSN 77
Query: 198 NQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISL 257
NQL I + + NL T L I M + + + NL NL ++L N++T P L
Sbjct: 78 NQLTDI--TPLKNL-TKLVDILMNNNQIAD--ITPLANLTNLTGLTLFNNQITDIDP--L 130
Query: 258 GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317
L L L L N + +L L L +L F N++ P + L+ L L +
Sbjct: 131 KNLTNLNRLELSSNTISD--ISALSGLTSLQQLSF-GNQVTDLKP--LANLTTLERLDIS 185
Query: 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI 377
SN ++ S L ++ ++N ++ PL G L + + L+ N L D +
Sbjct: 186 SNKVS--DISVLAKLTNLESLIATNNQISDITPL--GILTNLDELSLNGNQLKD--IGTL 239
Query: 378 GGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437
L+NL LA N++ P L L L L L N S P L L L L+
Sbjct: 240 ASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELN 295
Query: 438 FNRLKGEIPSGE----SFANFSDNSFMGNSFLCGSPNLQV 473
N+L+ P ++ N+ S + LQ
Sbjct: 296 ENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQR 335
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 155 bits (395), Expect = 3e-43
Identities = 86/400 (21%), Positives = 154/400 (38%), Gaps = 59/400 (14%)
Query: 47 LIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFD 106
++ + + P +L +L ++ + L ++ LV+
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 107 GPRH----SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ 162
+ +NLE L L N + P + N KL+ L I TN T S + NL NL+
Sbjct: 58 SIQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113
Query: 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPY 222
L L+ + ++ +S L N + ++L N S + N+ T L Y+ +
Sbjct: 114 ELYLNEDNISD-------ISPLANLTKMYSLNLGANHNLSD-LSPLSNM-TGLNYLTVTE 164
Query: 223 CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC 282
+ I NL +L ++SL N++ P L L L Y N++ P +
Sbjct: 165 SKVKD--VTPIANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VA 218
Query: 283 NLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342
N+ RL L+ +NK+ P + LS L L + +N ++ +
Sbjct: 219 NMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDINA---------------- 260
Query: 343 NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLG 402
+ +L + +++ N +SD +V+ LS L L N+L E +G
Sbjct: 261 ----------VKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIG 308
Query: 403 DLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
L +L L LS N + P L ++ + + +K
Sbjct: 309 GLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 129 bits (328), Expect = 9e-34
Identities = 70/335 (20%), Positives = 131/335 (39%), Gaps = 31/335 (9%)
Query: 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
L + P + ++ ++ S + + L ++ L ++ +
Sbjct: 2 AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57
Query: 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
S + + NL+ ++L GNQ+ I S + NL L +Y+ + +
Sbjct: 58 S-------IQGIEYLTNLEYLNLNGNQITDI--SPLSNL-VKLTNLYIGTNKIT--DISA 105
Query: 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292
+ NL NL + L + ++ P L L K+ L L N S L N+ L L
Sbjct: 106 LQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANHNL-SDLSPLSNMTGLNYLTV 162
Query: 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352
++K+ P I L+ L +L L+ N + + P SL + F N + P+
Sbjct: 163 TESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITPV- 217
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412
N+ + + + N ++D P + LS L + + N++ ++ DL L+ L++
Sbjct: 218 -ANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNV 272
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
+N S L L L L+ N+L E
Sbjct: 273 GSNQISDISV--LNNLSQLNSLFLNNNQLGNEDME 305
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 2e-04
Identities = 14/64 (21%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
+L +L +L +NNN + + L + LS N +T + P + +L+ +
Sbjct: 284 NNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFA 341
Query: 78 NNNL 81
N +
Sbjct: 342 NQVI 345
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 152 bits (385), Expect = 4e-42
Identities = 55/333 (16%), Positives = 113/333 (33%), Gaps = 31/333 (9%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
S E LY + + + + AN N Q +
Sbjct: 12 SGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRA 67
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
L ++ L + ++L L P L + L+++ + +P
Sbjct: 68 LKATADLLEDATQP----GRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELP 120
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
+ + L T++L N L ++P S+ L +L+ L + +P+ L +
Sbjct: 121 DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------ 173
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
L L++L L + +P++ +L+++ ++ L+ +L
Sbjct: 174 ---------DASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLKSLKIRNSPLS-ALG 222
Query: 351 LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA-YNKLQGSIPESLGDLRSLEF 409
I +L + +DL + P + GG + L L + L ++P + L LE
Sbjct: 223 PAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEK 281
Query: 410 LDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
LDL +P +L + + +
Sbjct: 282 LDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 145 bits (368), Expect = 1e-39
Identities = 50/357 (14%), Positives = 104/357 (29%), Gaps = 53/357 (14%)
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE-NNNFDGPRHSNLERLYLER 120
+ + L + + + ++ +SN ++
Sbjct: 5 HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRT 64
Query: 121 NNFSGTIPSFIFNAS--KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178
+ +A+ L +R+ P L +LQ + + L
Sbjct: 65 GRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM------ 117
Query: 179 SFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN 238
+++ L+ + L N L LP+S+ +L L + + C +PE + +
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASL-NRLRELSIRACPELTELPEPLAST-- 173
Query: 239 LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLF 298
L LQ L L + S+P S+ NL L L+ ++ L
Sbjct: 174 -------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS 219
Query: 299 GSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKV 358
++ I L L L + + + P G
Sbjct: 220 -ALGPAIHHLPKLEEL------------------------DLRGCTALRNYPPIFGGRAP 254
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
+ + L + ++P I L+ L L +P + L + + + +
Sbjct: 255 LKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 137 bits (348), Expect = 8e-37
Identities = 55/320 (17%), Positives = 106/320 (33%), Gaps = 23/320 (7%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAL 74
H + L + P L Q Q + N + +
Sbjct: 6 HHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIE 61
Query: 75 LLGNNNLIGEIPHEIGNLH--NLEYLVLENNNFDG-P----RHSNLERLYLERNNFSGTI 127
L + + L L + P R S+L+ + ++ +
Sbjct: 62 TRTGRALK-ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLM-EL 119
Query: 128 PSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLS-FNYLTS---STSELSFLSS 183
P + + L L + N +P++IA+L L+ L + LT +
Sbjct: 120 PDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178
Query: 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMS 243
+ NL+ + L + LP+S+ NL +L+ + + S + I +L L +
Sbjct: 179 HQGLVNLQSLRLEWTGIRS-LPASIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELD 235
Query: 244 L-GINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP 302
L G L + P G L+ L L ++P + L +L +L +P
Sbjct: 236 LRGCTALR-NYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLP 294
Query: 303 ACIGKLSPLRNLLLHSNVLT 322
+ I +L +L+ ++
Sbjct: 295 SLIAQLPANCIILVPPHLQA 314
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 121 bits (305), Expect = 6e-31
Identities = 45/266 (16%), Positives = 88/266 (33%), Gaps = 20/266 (7%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
P AL++ + + P ++ L +++ L L P + L L N
Sbjct: 80 QPGRVALELRSVPLPQ-FPDQAFRLSHLQHMTIDAAGLMEL-PDTMQQFAGLETLTLARN 137
Query: 80 NLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSI 139
L +P I +L+ L L + L L + L
Sbjct: 138 PLR-ALPASIASLNRLRELSIRACP-------ELTELPEPLASTD--ASGEHQGLVNLQS 187
Query: 140 LGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199
L + ++P++IANL+NL+ L + + L++ ++ + L+ +DL G
Sbjct: 188 LRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA------LGPAIHHLPKLEELDLRGCT 240
Query: 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGK 259
P G L+ + + C +P +I L L + L +P + +
Sbjct: 241 ALRNYPPIFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299
Query: 260 LQKLQGLYLYKNKLEGSIPDSLCNLG 285
L + + +
Sbjct: 300 LPANCIILVPPHLQAQLDQHRPVARP 325
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 109 bits (275), Expect = 9e-27
Identities = 44/267 (16%), Positives = 78/267 (29%), Gaps = 28/267 (10%)
Query: 183 SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITM 242
+ + + G+ + R N N
Sbjct: 7 HHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNA-----DRNRWHSAWRQANSNNPQIE 61
Query: 243 SLGINKLTGSIPISLGKLQ--KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGS 300
+ L + L L L L PD L L + L
Sbjct: 62 TRTGRALK-ATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL-ME 118
Query: 301 IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVV 360
+P + + + L L L N L +P++ SL + + + LP + +
Sbjct: 119 LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST---- 173
Query: 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGF 420
GL NL L + ++ S+P S+ +L++L+ L + N+ S
Sbjct: 174 -----------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA- 220
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPS 447
+ + L LE L+L P
Sbjct: 221 LGPAIHHLPKLEELDLRGCTALRNYPP 247
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 86.2 bits (214), Expect = 1e-18
Identities = 43/192 (22%), Positives = 67/192 (34%), Gaps = 19/192 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAI---------SL 52
A N L +LP + L RL+ L I +P L L
Sbjct: 133 TLARNPLR-ALPASIAS-LNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRL 190
Query: 53 SHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRH 110
+ L P I NL + ++L + N+ L + I +L LE L L P
Sbjct: 191 EWTGIRSL-PASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPI 248
Query: 111 ----SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDL 166
+ L+RL L+ + T+P I ++L L +R +PS IA L + +
Sbjct: 249 FGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILV 308
Query: 167 SFNYLTSSTSEL 178
+
Sbjct: 309 PPHLQAQLDQHR 320
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328 | Back alignment and structure |
|---|
Score = 83.8 bits (208), Expect = 6e-18
Identities = 30/207 (14%), Positives = 57/207 (27%), Gaps = 18/207 (8%)
Query: 251 GSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSP 310
GS + LY + D L R +
Sbjct: 2 GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQA----NSNN 57
Query: 311 LRNLLLHSNVLTYVIPS-TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369
+ L + + S L P L + + + L
Sbjct: 58 PQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGL 116
Query: 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF---- 425
+P + + L +LA N L+ ++P S+ L L L + +P
Sbjct: 117 M-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD 174
Query: 426 -----EKLLYLEYLNLSFNRLKGEIPS 447
+ L+ L+ L L + ++ +P+
Sbjct: 175 ASGEHQGLVNLQSLRLEWTGIR-SLPA 200
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 143 bits (362), Expect = 1e-37
Identities = 64/433 (14%), Positives = 131/433 (30%), Gaps = 23/433 (5%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAL 74
++ Q+ R + + ++ + + + + LS N L+ + D+ T L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 75 LLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG-PRHSNLERLYLERNNFSGTIPSFIFN 133
L +N L ++ +L L L L NN ++E L+ NN S +
Sbjct: 64 NLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRG- 119
Query: 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVI 193
+ + N + +Q+LDL N + + ++F + L+ +
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHL 174
Query: 194 DLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSI 253
+L N ++ + + L+ + + + + + E + + +SL NKL I
Sbjct: 175 NLQYNFIYDVKGQV---VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229
Query: 254 PISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313
+L Q L+ L N + +Q + + + +
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Query: 314 LLLHSNVLTYVIPSTFLS-----LRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN 368
L + +P+ F R S L + N ID +
Sbjct: 288 LGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQ 347
Query: 369 LSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428
I V L + L+ + + E+
Sbjct: 348 YRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVG-QIELQHATEEQ 406
Query: 429 LYLEYLNLSFNRL 441
L+ L R
Sbjct: 407 SPLQLLRAIVKRY 419
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 105 bits (264), Expect = 1e-24
Identities = 44/293 (15%), Positives = 97/293 (33%), Gaps = 45/293 (15%)
Query: 151 IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN 210
I N + ++ + L + + L ++ N+K +DL+GN L I
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASL-----RQSAWNVKELDLSGNPLSQI------- 49
Query: 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYK 270
++ L ++L N L ++ + L L+ L L
Sbjct: 50 ------------------SAADLAPFTKLELLNLSSNVLYETLDL--ESLSTLRTLDLNN 89
Query: 271 NKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFL 330
N ++ L + L +N + + + +N+ L +N +T +
Sbjct: 90 NYVQ-----ELLVGPSIETLHAANNNI-SRVSC--SRGQGKKNIYLANNKITMLRDLDEG 141
Query: 331 SLRDILVFNFSSNSLNG-SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389
+ + N ++ + + + ++L N + + + + L L+
Sbjct: 142 CRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FAKLKTLDLS 199
Query: 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
NKL + + ++ L NN I ++ LE+ +L N
Sbjct: 200 SNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487 | Back alignment and structure |
|---|
Score = 82.6 bits (204), Expect = 5e-17
Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 11/178 (6%)
Query: 276 SIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDI 335
+I + N R + D+ L ++ + ++ L L N L+ + + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395
+ N SSN L LD+ +L + +DL+ N + + + ++ A N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112
Query: 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
+ S + + + L+NN + ++YL+L N + + E A+
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 138 bits (349), Expect = 2e-35
Identities = 86/479 (17%), Positives = 172/479 (35%), Gaps = 48/479 (10%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
+ + T S+P + +++LD++ N +T +L C L + L +++ +
Sbjct: 14 SRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDA 69
Query: 65 IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG-------PRHSNLERLY 117
+L S L L +N+L G L +L+YL L N + P +NL+ L
Sbjct: 70 FYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLR 129
Query: 118 LERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS 176
+ I F + L+ L I+ S ++ ++R++ L L +
Sbjct: 130 IGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189
Query: 177 ELSFLSSLRNCRNLKVIDLTGNQLHGI---------LPSSMGNLSTSLEYIYMPYCRRSG 227
+++ ++L L + S M L+ +
Sbjct: 190 -----IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELL 244
Query: 228 RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK--------LQGLYLYKNKLEGSIPD 279
++ I L + +N L P + + ++ L++ + L +
Sbjct: 245 KLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLST 304
Query: 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPST---FLSLRDIL 336
L ++ + ++K+F + L L L L N++ + +
Sbjct: 305 VYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQ 364
Query: 337 VFNFSSNSLN--GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
S N L + LK + +D+SRN +P + F +L+ ++
Sbjct: 365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR 423
Query: 395 GSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
+ + ++LE LD+SNN+ F L L+ L +S N+LK +P F
Sbjct: 424 -VVKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPDASLFPV 474
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 129 bits (326), Expect = 2e-32
Identities = 70/422 (16%), Positives = 132/422 (31%), Gaps = 22/422 (5%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDI-NNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ N + +L LQ L I N + + L + + L
Sbjct: 104 NLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNY 163
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLER 120
+ + ++ L L + + L ++ YL L + N + S L +
Sbjct: 164 QSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSS 223
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSF 180
+ + L + D + + SEL
Sbjct: 224 PMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVV-SELGK 282
Query: 181 LSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLI 240
+ ++ ++ + + L L + L ++ I + + +L +L
Sbjct: 283 VETV----TIRRLHIPQFYLFYDLSTVYSLL-EKVKRITVENSKVFLVPCSFSQHLKSLE 337
Query: 241 TMSLGINKLTGSI---PISLGKLQKLQGLYLYKNKLE--GSIPDSLCNLGRLVELQFYDN 295
+ L N + G LQ L L +N L + L L L L N
Sbjct: 338 FLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRN 397
Query: 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGN 355
+P +R L L S + V +L V + S+N+L+ S L +
Sbjct: 398 TF-HPMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLE---VLDVSNNNLD-SFSLFLPR 452
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
L+ + +SRN L ++P L ++ N+L+ L SL+ + L N
Sbjct: 453 LQE---LYISRNKLK-TLP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTN 507
Query: 416 SF 417
+
Sbjct: 508 PW 509
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549 | Back alignment and structure |
|---|
Score = 60.9 bits (148), Expect = 4e-10
Identities = 33/118 (27%), Positives = 51/118 (43%), Gaps = 6/118 (5%)
Query: 337 VFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395
V + S S S+P + +K +DLS N ++ + +NL L +++
Sbjct: 9 VCDGRSRSFT-SIPSGLTAAMKS---LDLSFNKITYIGHGDLRACANLQVLILKSSRINT 64
Query: 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
++ L SLE LDLS+N S F L L+YLNL N + + F N
Sbjct: 65 IEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQ-TLGVTSLFPN 121
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 133 bits (337), Expect = 3e-34
Identities = 90/442 (20%), Positives = 159/442 (35%), Gaps = 68/442 (15%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ N L+ SLP+ P L++L + N +T +P + L+ + + L+ L
Sbjct: 77 ELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLP 130
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRHSNLERLYLE 119
P L L +NN + ++P E+ N L+ + ++NN+ +LE +
Sbjct: 131 P----LLEY----LGVSNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAG 181
Query: 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179
N +P N L+ + NS + +L+ + N L
Sbjct: 182 NNQLE-ELPELQ-NLPFLTAIYADNNS----LKKLPDLPLSLESIVAGNNILEE------ 229
Query: 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINL 239
L L+N L I N L LP +L E + + + +PE +L L
Sbjct: 230 -LPELQNLPFLTTIYADNNLLK-TLPDLPPSL----EALNVRDNYLT-DLPELPQSLTFL 282
Query: 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFG 299
+ L+ P L L N++ S+ D +L EL +NKL
Sbjct: 283 DVSENIFSGLSELPP-------NLYYLNASSNEIR-SLCDLPPSL---EELNVSNNKL-I 330
Query: 300 SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV 359
+PA +L L+ N L +P +L+ + + N L P +++
Sbjct: 331 ELPALPPRL---ERLIASFNHLAE-VPELPQNLKQL---HVEYNPLR-EFPDIPESVE-- 380
Query: 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419
DL N+ +P + L L + N L+ P+ S+E L +++
Sbjct: 381 ---DLRMNSHLAEVPELPQNLKQL---HVETNPLR-EFPDIPE---SVEDLRMNSERVVD 430
Query: 420 FIPRSFEKLLYLEYLNLSFNRL 441
+ E LE +
Sbjct: 431 PYEFAHETTDKLEDDVFEHHHH 452
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 4e-34
Identities = 90/451 (19%), Positives = 156/451 (34%), Gaps = 74/451 (16%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQ-------------CQELIAIS 51
++ LT +P + + + P + ++ +
Sbjct: 20 SSNLT-EMPVEAEN-VKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELE 77
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS 111
L++ L+ L P +L S L+ N+L E+P +L +L
Sbjct: 78 LNNLGLSSL-PELPPHLES---LVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL-PP 131
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
LE L + N +P + N+S L I+ + NS +P +L+++ N L
Sbjct: 132 LLEYLGVSNNQLE-KLPE-LQNSSFLKIIDVDNNSLK-KLPD---LPPSLEFIAAGNNQL 185
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231
L L+N L I N L LP +L E I
Sbjct: 186 EE-------LPELQNLPFLTAIYADNNSLKK-LPDLPLSL----ESIVAGNNILE--ELP 231
Query: 232 EIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291
E+ NL L T+ N L ++P L+ L + N L +P+ +L L +
Sbjct: 232 ELQNLPFLTTIYADNNLLK-TLPDLPPSLEAL---NVRDNYLT-DLPELPQSLTFLDVSE 286
Query: 292 FYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351
+ L P L L SN + + SL N S+N L LP
Sbjct: 287 NIFSGLSELPPN-------LYYLNASSNEIR-SLCDLPPSLE---ELNVSNNKLI-ELPA 334
Query: 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411
L+ + S N+L+ +P + L L + YN L+ P+ + L
Sbjct: 335 LPPRLER---LIASFNHLA-EVPELPQNLKQL---HVEYNPLR-EFPDIPESVEDL---R 383
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
++++ +P + L + L++ N L+
Sbjct: 384 MNSHLAE--VPELPQNL---KQLHVETNPLR 409
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 132 bits (335), Expect = 5e-34
Identities = 83/401 (20%), Positives = 141/401 (35%), Gaps = 58/401 (14%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS 111
+ LT + P + N+ S + P G + L +
Sbjct: 18 RHSSNLTEM-PVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDC-----LDR 71
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
L L S ++P + L L NS + +P +L++L + + L
Sbjct: 72 QAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKAL 126
Query: 172 TSSTS----------ELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMP 221
+ +L L L+N LK+ID+ N L LP + LE+I
Sbjct: 127 SDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLK-KLPDLPPS----LEFIAAG 181
Query: 222 YCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSL 281
+ +P E+ NL L + N L +P L+ + N L L
Sbjct: 182 NNQLE-ELP-ELQNLPFLTAIYADNNSLK-KLPDLPLSLES---IVAGNNIL--EELPEL 233
Query: 282 CNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFS 341
NL L + +N L ++P L L + N LT +P SL + + S
Sbjct: 234 QNLPFLTTIYADNNLL-KTLPDLPPS---LEALNVRDNYLT-DLPELPQSLTFL---DVS 285
Query: 342 SNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL 401
N + L NL ++ S N + ++ +L +++ NKL +P
Sbjct: 286 ENIFS-GLSELPPNLYY---LNASSNEIR----SLCDLPPSLEELNVSNNKLI-ELPALP 336
Query: 402 GDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
LE L S N + +P + L+ L++ +N L+
Sbjct: 337 P---RLERLIASFNHLA-EVPELPQN---LKQLHVEYNPLR 370
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 2e-21
Identities = 54/324 (16%), Positives = 91/324 (28%), Gaps = 55/324 (16%)
Query: 151 IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN 210
I + LQ + LT N ++ ++ P G
Sbjct: 3 INPRNVSNTFLQEPLRHSSNLT------EMPVEAENVKSKTEYYNAWSEWERNAPPGNGE 56
Query: 211 LSTSLEYIYMPYCRRSG------------RIPEEIGNLINLITMSLGINKLTGSIPISLG 258
+ + C +PE +L +L N LT +P
Sbjct: 57 Q-REMAVSRLRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLT-ELPELPQ 111
Query: 259 KLQKLQGLYLYKNKLEGSIP---------------DSLCNLGRLVELQFYDNKLFGSIPA 303
L+ L L P L N L + +N L +P
Sbjct: 112 SLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSL-KKLPD 170
Query: 304 CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGID 363
L + +N L + +L + +NSL LP +L+ I
Sbjct: 171 LPPS---LEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLK-KLPDLPLSLES---IV 221
Query: 364 LSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423
N L + + L L N L+ ++P+ L +L D +P
Sbjct: 222 AGNNILEE--LPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRDNYLTD----LPE 274
Query: 424 SFEKLLYLEYLNLSFNRLKGEIPS 447
+ L +L+ F+ L P+
Sbjct: 275 LPQSLTFLDVSENIFSGLSELPPN 298
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 127 bits (321), Expect = 3e-33
Identities = 50/317 (15%), Positives = 110/317 (34%), Gaps = 17/317 (5%)
Query: 15 DMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARAL 74
++ Q+ R + + ++ + + + + LS N L+ + D+ T L
Sbjct: 4 EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63
Query: 75 LLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG-PRHSNLERLYLERNNFSGTIPSFIFN 133
L +N + E ++ +L L L L NN ++E L+ NN S +
Sbjct: 64 NLSSNV-LYETL-DLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNIS-RVSCSRG- 119
Query: 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVI 193
+ + N + +Q+LDL N + + ++F + L+ +
Sbjct: 120 -QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDT----VNFAELAASSDTLEHL 174
Query: 194 DLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSI 253
+L N ++ + + L+ + + + + + E + + +SL NKL I
Sbjct: 175 NLQYNFIYDVKGQV---VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229
Query: 254 PISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313
+L Q L+ L N + +Q + + + +
Sbjct: 230 EKALRFSQNLEHFDLRGNGFHCGTLRDF--FSKNQRVQTVAKQTVKKLTGQNEEECTVPT 287
Query: 314 LLLHSNVLTYVIPSTFL 330
L + +P+ F
Sbjct: 288 LGHYGAYCCEDLPAPFA 304
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 118 bits (297), Expect = 6e-30
Identities = 60/362 (16%), Positives = 109/362 (30%), Gaps = 70/362 (19%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
+ + + ++ + S +A + L + N S + +A L+ L+LS N
Sbjct: 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNV 69
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
L L + L+ +DL N +
Sbjct: 70 LYE-------TLDLESLSTLRTLDLNNNYV------------------------------ 92
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
+E+ ++ T+ N ++ +S + Q + +YL NK+ R+ L
Sbjct: 93 QELLVGPSIETLHAANNNISR---VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYL 149
Query: 291 QFYDNKLFG-SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSL 349
N++ + L +L L N + V +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKGQVVFA------------------ 191
Query: 350 PLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEF 409
LK +DLS N L+ + + + + SL NKL I ++L ++LE
Sbjct: 192 -----KLKT---LDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEH 241
Query: 410 LDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469
DL N F R F ++ +K E G P
Sbjct: 242 FDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDLP 300
Query: 470 NL 471
Sbjct: 301 AP 302
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 98.5 bits (246), Expect = 6e-23
Identities = 42/231 (18%), Positives = 78/231 (33%), Gaps = 24/231 (10%)
Query: 229 IPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288
I E N + + L ++ ++ L L N L L +L
Sbjct: 2 IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61
Query: 289 ELQFYDNKL-----FGSIPA------------CIGKLSPLRNLLLHSNVLTYVIPSTFLS 331
L N L S+ + + L +N ++ V S
Sbjct: 62 LLNLSSNVLYETLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQG 121
Query: 332 LRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAY 390
++I ++N + LD G V +DL N + + + L +L Y
Sbjct: 122 KKNI---YLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQY 178
Query: 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
N + + + L+ LDLS+N + F+ F+ + +++L N+L
Sbjct: 179 NFIY-DVKGQVV-FAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKL 226
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 83.9 bits (208), Expect = 5e-18
Identities = 32/178 (17%), Positives = 69/178 (38%), Gaps = 11/178 (6%)
Query: 276 SIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDI 335
+I + N R + D+ L ++ + ++ L L N L+ + + +
Sbjct: 1 AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60
Query: 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395
+ N SSN L LD+ +L + +DL+ N + + + ++ A N +
Sbjct: 61 ELLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQE-----LLVGPSIETLHAANNNIS- 112
Query: 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
+ S + + + L+NN + ++YL+L N + + E A+
Sbjct: 113 RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEID-TVNFAELAAS 167
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317 | Back alignment and structure |
|---|
Score = 56.9 bits (138), Expect = 4e-09
Identities = 22/105 (20%), Positives = 39/105 (37%), Gaps = 4/105 (3%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D N + ++ L+ L++ N + V +L + LS N+L +
Sbjct: 150 DLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD-VK-GQVVFAKLKTLDLSSNKLAF-M 206
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFD 106
+ + + L NN L+ I + NLE+ L N F
Sbjct: 207 GPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFH 250
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 131 bits (330), Expect = 9e-33
Identities = 79/340 (23%), Positives = 137/340 (40%), Gaps = 50/340 (14%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
+ L + + + T+P + ++ L I N+ + ++P+ LR L ++S N
Sbjct: 40 NGNAVLNVGESGLT-TLPDCLPA--HITTLVIPDNNLT-SLPALPPELRTL---EVSGNQ 92
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
LTS L + L + + L +++ + + +P
Sbjct: 93 LTS------LPVLPPGLLELSIFSNPLTHLPALP--------SGLCKLWIFGNQLT-SLP 137
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
L L S+ N+L S+P +L KL + Y N+L S+P L EL
Sbjct: 138 VLPPGLQEL---SVSDNQLA-SLPALPSELCKL---WAYNNQLT-SLPMLPSGL---QEL 186
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
DN+L S+P +L L ++N LT +P+ L+++ S N L SLP
Sbjct: 187 SVSDNQL-ASLPTLPSEL---YKLWAYNNRLTS-LPALPSGLKEL---IVSGNRLT-SLP 237
Query: 351 LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
+ LK + +S N L+ S+P + GL +L S+ N+L +PESL L S +
Sbjct: 238 VLPSELKE---LMVSGNRLT-SLPMLPSGLLSL---SVYRNQLT-RLPESLIHLSSETTV 289
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGES 450
+L N S ++ ++ + R S
Sbjct: 290 NLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPR 329
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 118 bits (298), Expect = 1e-28
Identities = 86/421 (20%), Positives = 131/421 (31%), Gaps = 119/421 (28%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82
L++ + +T +P L + + + N LT L P L + L + N L
Sbjct: 42 NAVLNVGESGLTT-LPDCL--PAHITTLVIPDNNLTSL-PALPPELRT---LEVSGNQLT 94
Query: 83 GEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGI 142
+P L L + S L +L++ N +
Sbjct: 95 -SLPVLPPGLLELSIFSNPLTHLP-ALPSGLCKLWIFGNQLT------------------ 134
Query: 143 RTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHG 202
++P LQ L +S N L S + S L L NQL
Sbjct: 135 -------SLP---VLPPGLQELSVSDNQLASLPALPSELCKL---------WAYNNQL-- 173
Query: 203 ILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK 262
TSL P L L S+ N+L S+P +L K
Sbjct: 174 ----------TSL--------------PMLPSGLQEL---SVSDNQLA-SLPTLPSELYK 205
Query: 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT 322
L + Y N+L S+P L EL N+L S+P +L + L++ N LT
Sbjct: 206 L---WAYNNRLT-SLPALPSGLK---ELIVSGNRL-TSLPVLPSEL---KELMVSGNRLT 254
Query: 323 YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSN 382
SLP+ L + + RN L+ +P + LS+
Sbjct: 255 -------------------------SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSS 285
Query: 383 LAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI---PRSFEKLLYLEYLNLSFN 439
+L N L ++L ++ S F PR L L
Sbjct: 286 ETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPA 345
Query: 440 R 440
R
Sbjct: 346 R 346
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 112 bits (281), Expect = 2e-26
Identities = 75/300 (25%), Positives = 118/300 (39%), Gaps = 50/300 (16%)
Query: 155 IANLRNLQWLDLSFNYLTS-------STSELSF----LSSL-RNCRNLKVIDLTGNQLHG 202
L++ + LT+ + L L+SL L+ ++++GNQL
Sbjct: 36 ACLNNGNAVLNVGESGLTTLPDCLPAHITTLVIPDNNLTSLPALPPELRTLEVSGNQLT- 94
Query: 203 ILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK 262
LP L L P +P L L + N+LT S+P+ LQ+
Sbjct: 95 SLPVLPPGL-LELSIFSNPLT----HLPALPSGLCKL---WIFGNQLT-SLPVLPPGLQE 145
Query: 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT 322
L + N+L S+P L +L Y+N+L S+P L+ L + N L
Sbjct: 146 ---LSVSDNQLA-SLPALPSE---LCKLWAYNNQL-TSLPMLPSG---LQELSVSDNQLA 194
Query: 323 YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSN 382
+P+ L + +N N L SLP LK + +S N L+ S+P + L
Sbjct: 195 S-LPTLPSELYKLWAYN---NRLT-SLPALPSGLKE---LIVSGNRLT-SLPVLPSELKE 245
Query: 383 LAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
L ++ N+L S+P L S L + N + +P S L +NL N L
Sbjct: 246 L---MVSGNRLT-SLPMLPSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS 297
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 106 bits (265), Expect = 2e-24
Identities = 62/298 (20%), Positives = 103/298 (34%), Gaps = 49/298 (16%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+N LT SLP P L+ L+++ N +T +P EL S L L
Sbjct: 67 VIPDNNLT-SLPA----LPPELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLTHLPALP 120
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRHSNLERLYLE 119
L L + N L +P L L + +N S L +L+
Sbjct: 121 S----GLCK---LWIFGNQLT-SLPVLPPGLQELS---VSDNQLASLPALPSELCKLWAY 169
Query: 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179
N + ++P S L L + N + ++P+ + L L + L +
Sbjct: 170 NNQLT-SLPMLP---SGLQELSVSDNQLA-SLPTLPSELYKLWAYNNRLTSLPAL----- 219
Query: 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINL 239
LK + ++GN+L LP L+ + + R + +P L++L
Sbjct: 220 -------PSGLKELIVSGNRLTS-LPVLPSE----LKELMVSGNRLT-SLPMLPSGLLSL 266
Query: 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297
S+ N+LT +P SL L + L N L + Y +
Sbjct: 267 ---SVYRNQLT-RLPESLIHLSSETTVNLEGNPLS-ERTLQALR--EITSAPGYSGPI 317
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622 | Back alignment and structure |
|---|
Score = 58.4 bits (141), Expect = 3e-09
Identities = 41/200 (20%), Positives = 64/200 (32%), Gaps = 14/200 (7%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
NN LT SLP L+ L ++ N +T +P EL + +S N+LT L P
Sbjct: 210 NNRLT-SLPA----LPSGLKELIVSGNRLTS-LPVLP---SELKELMVSGNRLTSL-PML 259
Query: 65 IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFS 124
L S L + N L +P + +L + + LE N L +
Sbjct: 260 PSGLLS---LSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSG 315
Query: 125 GTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSL 184
I + AS + + + F ++ + FL L
Sbjct: 316 PIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWHMFGQEDNADAFSLFLDRL 375
Query: 185 RNCRNLKVIDLTGNQLHGIL 204
N Q+ L
Sbjct: 376 SETENFIKDAGFKAQISSWL 395
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 124 bits (313), Expect = 2e-31
Identities = 64/383 (16%), Positives = 126/383 (32%), Gaps = 32/383 (8%)
Query: 92 LHNLEYLVLENNNFDGPRH---SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSF 147
+++ + + + G +N + + + + +P+ + + ++ +L +
Sbjct: 23 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 81
Query: 148 SGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
A +Q L + FN + + +N L V+ L N L +
Sbjct: 82 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGI 136
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266
N L + M RI ++ +L + L N+LT + L + L
Sbjct: 137 FHNT-PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 191
Query: 267 YLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP 326
+ N L +L + EL N + + L L L N LT
Sbjct: 192 NVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNLTDT-- 241
Query: 327 STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386
+ L+ ++ + S N L + ++ + + +S N L ++ + L
Sbjct: 242 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 300
Query: 387 SLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446
L++N L + + LE L L +NS + L+ L LS N
Sbjct: 301 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD-CNS 355
Query: 447 SGESFANFSDNSFMGNSFLCGSP 469
F N + + C
Sbjct: 356 LRALFRNVARPAVDDADQHCKID 378
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 1e-28
Identities = 65/340 (19%), Positives = 118/340 (34%), Gaps = 46/340 (13%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
F N+T+ LP + +++ L++N+ + + + + N + L
Sbjct: 51 TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 109
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSN 112
P N+ L+L N + +P I N L L + NNN F +
Sbjct: 110 PHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT--S 166
Query: 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
L+ L L N + + + L + N ST+A ++ LD S N +
Sbjct: 167 LQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 218
Query: 173 S--------------STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI 218
+ L+ + L N L +DL+ N+L I+ + LE +
Sbjct: 219 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERL 277
Query: 219 YMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP 278
Y+ R + + L + L N L + + + +L+ LYL N + ++
Sbjct: 278 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 334
Query: 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318
S L L N C + RN+ +
Sbjct: 335 LS--THHTLKNLTLSHNDW-----DCNSLRALFRNVARPA 367
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 101 bits (254), Expect = 1e-23
Identities = 65/323 (20%), Positives = 107/323 (33%), Gaps = 43/323 (13%)
Query: 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179
R I S + + I + L N + + + + + L
Sbjct: 6 RQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAAL- 64
Query: 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINL 239
L + R +++++L Q+ I + +++ +Y
Sbjct: 65 ----LDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLY-------------------- 99
Query: 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFG 299
+G N + P + L L L +N L N +L L +N L
Sbjct: 100 ----MGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLER 155
Query: 300 SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV 359
+ L+NL L SN LT+V S SL N S N L+ + V
Sbjct: 156 IEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHA---NVSYNLLS-----TLAIPIAV 207
Query: 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419
+D S N+++ + L L +N L L + L +DLS N
Sbjct: 208 EELDASHNSIN-VVRG--PVNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEK 262
Query: 420 FIPRSFEKLLYLEYLNLSFNRLK 442
+ F K+ LE L +S NRL
Sbjct: 263 IMYHPFVKMQRLERLYISNNRLV 285
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 2e-09
Identities = 15/124 (12%), Positives = 38/124 (30%), Gaps = 1/124 (0%)
Query: 325 IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384
I S + + + + L + + + ++ +
Sbjct: 13 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 72
Query: 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGE 444
+L +++ + +++ L + N+ P F+ + L L L N L
Sbjct: 73 LLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS-S 131
Query: 445 IPSG 448
+P G
Sbjct: 132 LPRG 135
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-30
Identities = 69/333 (20%), Positives = 110/333 (33%), Gaps = 34/333 (10%)
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
+ L L +N T+ F + L L + N S P NL NL+ L L N
Sbjct: 32 TETRLLDLGKNRIK-TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRI 229
L + NL +D++ N++ +L +L +L+ + + I
Sbjct: 91 RLKLIPLGV-----FTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLV-YI 143
Query: 230 PEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288
L +L ++L LT +L L L L L + S L RL
Sbjct: 144 SHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLK 203
Query: 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348
L+ ++ L +L + LT V L
Sbjct: 204 VLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLV--------------- 248
Query: 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
L+ ++LS N +S +++ L L L +L P + L L
Sbjct: 249 ------YLRF---LNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299
Query: 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L++S N + F + LE L L N L
Sbjct: 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPL 332
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 122 bits (307), Expect = 3e-30
Identities = 67/321 (20%), Positives = 116/321 (36%), Gaps = 15/321 (4%)
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
+P I + LDL N + + + +L+ ++L N + + P +
Sbjct: 25 AVPEGI--PTETRLLDLGKNRIKTLNQ-----DEFASFPHLEELELNENIVSAVEPGAFN 77
Query: 210 NLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYL 268
NL +L + + R IP + L NL + + NK+ + L L+ L +
Sbjct: 78 NL-FNLRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEV 135
Query: 269 YKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVIPS 327
N L + L L +L L SIP + L L L L + +
Sbjct: 136 GDNDLVYISHRAFSGLNSLEQLTLEKCNL-TSIPTEALSHLHGLIVLRLRHLNINAIRDY 194
Query: 328 TFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387
+F L + V S ++ + + + ++ NL+ + L L F +
Sbjct: 195 SFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLN 254
Query: 388 LAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
L+YN + L +L L+ + L + P +F L YL LN+S N+L +
Sbjct: 255 LSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLEE 313
Query: 448 G--ESFANFSDNSFMGNSFLC 466
S N N C
Sbjct: 314 SVFHSVGNLETLILDSNPLAC 334
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 2e-29
Identities = 72/344 (20%), Positives = 127/344 (36%), Gaps = 32/344 (9%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
++P+ + + LD+ N + L + L+ N ++ + P
Sbjct: 20 RKRFV-AVPEGI---PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGA 75
Query: 65 IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFS 124
NL + R L L +N L ++ F G SNL +L + N
Sbjct: 76 FNNLFNLRTLGLRSNRL----------------KLIPLGVFTGL--SNLTKLDISENKIV 117
Query: 125 GTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS 183
+ ++F + L L + N + L +L+ L L LTS +E +
Sbjct: 118 -ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTE-----A 171
Query: 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMS 243
L + L V+ L ++ I S L L+ + + + + +NL ++S
Sbjct: 172 LSHLHGLIVLRLRHLNINAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLS 230
Query: 244 LGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPA 303
+ LT +++ L L+ L L N + L L RL E+Q +L +
Sbjct: 231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQL-AVVEP 289
Query: 304 CI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
L+ LR L + N LT + S F S+ ++ SN L
Sbjct: 290 YAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLA 333
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 91.7 bits (228), Expect = 5e-20
Identities = 49/227 (21%), Positives = 88/227 (38%), Gaps = 17/227 (7%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + N + L D M Q L L++L++ +N + R L ++L LT +
Sbjct: 110 DISENKIV-ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIP 168
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNF------DGPRHSNLE 114
+ +L L L + N I I L+ L+ L + + + + NL
Sbjct: 169 TEALSHLHGLIVLRLRHLN-INAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT 227
Query: 115 RLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
L + N + +P + L L + N S S + L LQ + L L
Sbjct: 228 SLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAV 286
Query: 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
+ R L+V++++GNQL + S ++ +LE + +
Sbjct: 287 VEPY-----AFRGLNYLRVLNVSGNQLTTLEESVFHSV-GNLETLIL 327
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477 | Back alignment and structure |
|---|
Score = 90.5 bits (225), Expect = 1e-19
Identities = 38/207 (18%), Positives = 69/207 (33%), Gaps = 14/207 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ +N L + L L+ L + ++T L LI + L H + +
Sbjct: 134 EVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIR 192
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH------SNLER 115
L + L + + + + NL L + + N + L
Sbjct: 193 DYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRF 252
Query: 116 LYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
L L N S TI + +L + + + P L L+ L++S N LT+
Sbjct: 253 LNLSYNPIS-TIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTL 311
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLH 201
+ + NL+ + L N L
Sbjct: 312 EESV-----FHSVGNLETLILDSNPLA 333
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 117 bits (296), Expect = 8e-29
Identities = 77/412 (18%), Positives = 131/412 (31%), Gaps = 70/412 (16%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN---- 104
+ LS N + L L + L + I + L +L L L+ N
Sbjct: 35 VDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 105 ----FDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN 160
F+G +NLE L L + L + N F L +
Sbjct: 95 ETGAFNGL--ANLEVLTLTQC--------------NLDGAVLSGNFFK--------PLTS 130
Query: 161 LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNL-STSLEYIY 219
L+ L L N + F N R V+DLT N++ I + N +
Sbjct: 131 LEMLVLRDNNIKKIQPASFF----LNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLL- 185
Query: 220 MPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
L ++ + L + K + L L N + S+
Sbjct: 186 ---------------RLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAK 230
Query: 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLR--DILV 337
+ ++Q ++ + TF L +
Sbjct: 231 RFFDAIAGTKIQSLILSNSYNMGSS-----------FGHTNFKDPDNFTFKGLEASGVKT 279
Query: 338 FNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396
+ S + + +L + + + + L++N ++ GL++L +L+ N L
Sbjct: 280 CDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSI 338
Query: 397 IPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+L LE LDLS N +SF L L+ L L N+LK +P G
Sbjct: 339 DSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLK-SVPDG 389
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 3e-24
Identities = 72/381 (18%), Positives = 123/381 (32%), Gaps = 44/381 (11%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNL-WQCQELIAISLSHNQLTGL 60
D + N++ L + L LQ L + + N LI + L +NQ L
Sbjct: 36 DLSLNSIA-ELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQL 94
Query: 61 IPRDIGNLTSARALLLGNNNLIG-EIPHEI-GNLHNLEYLVLENNN---------FDGPR 109
L + L L NL G + L +LE LVL +NN F R
Sbjct: 95 ETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMR 154
Query: 110 HSNLERLYLERNNFSGTIPSFIF-----------NASKLSILGIRTNSFSGTIPSTIANL 158
L L N +I S +++ +
Sbjct: 155 --RFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN 211
Query: 159 RNLQWLDLSFNYLTSSTSELSF--------LSSLRNCRNLKVIDLTGNQLHGILPSS-MG 209
++ LDLS N S ++ F S + + + G
Sbjct: 212 TSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKG 271
Query: 210 NLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPI-SLGKLQKLQGLY 267
++ ++ + + + + + + +L ++L N++ I + L L L
Sbjct: 272 LEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHLLKLN 329
Query: 268 LYKNKLEGSIPDSLC-NLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVLTYVI 325
L +N L GSI + NL +L L N + ++ L L+ L L +N L V
Sbjct: 330 LSQNFL-GSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKELALDTNQLKSVP 387
Query: 326 PSTFLSLRDILVFNFSSNSLN 346
F L + +N +
Sbjct: 388 DGIFDRLTSLQKIWLHTNPWD 408
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 102 bits (256), Expect = 1e-23
Identities = 66/341 (19%), Positives = 120/341 (35%), Gaps = 36/341 (10%)
Query: 137 LSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLT 196
++ + + NS + ++ + L++LQ+L + +F R +L ++ L
Sbjct: 32 VNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTF----RGLSSLIILKLD 87
Query: 197 GNQLHGILPSSMGNLSTSLEYIYMPYCR-RSGRIPEEI-GNLINLITMSLGINKLTGSIP 254
NQ + + L +LE + + C + L +L + L N + P
Sbjct: 88 YNQFLQLETGAFNGL-ANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQP 146
Query: 255 ISL-GKLQKLQGLYLYKNKLEGSIPDSLCNLG--RLVELQFYDNKLF--------GSIPA 303
S +++ L L NK++ + L N L+ L
Sbjct: 147 ASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCG 206
Query: 304 CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDI--LVFNFSSNSLNGSLPLDIGNLKVVVG 361
K + + L L N + F + SNS N N K
Sbjct: 207 NPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDN 266
Query: 362 -------------IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPE-SLGDLRSL 407
DLS++ + + +V ++L +LA N++ I + + L L
Sbjct: 267 FTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTHL 325
Query: 408 EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L+LS N R FE L LE L+LS+N ++ +
Sbjct: 326 LKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIR-ALGDQ 365
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 56.7 bits (137), Expect = 8e-09
Identities = 41/207 (19%), Positives = 72/207 (34%), Gaps = 30/207 (14%)
Query: 2 DFANNTLTGSLPDDMCQHLP--RLQALDINNNH-VTGPVPRNLWQC-----------QEL 47
D + N S+ + ++Q+L ++N++ + ++ +
Sbjct: 218 DLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNFTFKGLEASGV 277
Query: 48 IAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN-- 104
LS +++ L+ + T L L N I +I L +L L L N
Sbjct: 278 KTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNE-INKIDDNAFWGLTHLLKLNLSQNFLG 336
Query: 105 ------FDGPRHSNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTI-A 156
F+ LE L L N+ + F L L + TN ++P I
Sbjct: 337 SIDSRMFENL--DKLEVLDLSYNHIR-ALGDQSFLGLPNLKELALDTNQLK-SVPDGIFD 392
Query: 157 NLRNLQWLDLSFNYLTSSTSELSFLSS 183
L +LQ + L N S + +LS
Sbjct: 393 RLTSLQKIWLHTNPWDCSCPRIDYLSR 419
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455 | Back alignment and structure |
|---|
Score = 40.9 bits (96), Expect = 9e-04
Identities = 17/88 (19%), Positives = 35/88 (39%), Gaps = 6/88 (6%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
L +P + +++ + L+ N + S L+ L+FL + + I
Sbjct: 15 AICINRGLH-QVPEL---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVI 70
Query: 422 PR-SFEKLLYLEYLNLSFNRLKGEIPSG 448
+F L L L L +N+ ++ +G
Sbjct: 71 RNNTFRGLSSLIILKLDYNQFL-QLETG 97
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 117 bits (295), Expect = 2e-28
Identities = 88/472 (18%), Positives = 165/472 (34%), Gaps = 48/472 (10%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ + N ++ L L +L+ L I++N + QEL + LSHN+L +
Sbjct: 27 NISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVKI- 84
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPH--EIGNLHNLEYLVLENNN-----FDGPRHSNLE 114
+ + L L N +P E GN+ L++L L + H N+
Sbjct: 85 --SCHPTVNLKHLDLSFNAF-DALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNIS 141
Query: 115 RLYLERNNFSGTIPSF----IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN- 169
++ L G FN L I+ F + ++ + NL+ ++
Sbjct: 142 KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVL 201
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNL--STSLEYIYMPYCRRSG 227
+ LS L+ L+ L + L + + L T++ Y + + G
Sbjct: 202 EDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQG 261
Query: 228 RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287
++ + L+ L + + +
Sbjct: 262 QLDFRDFDYSGT-------------------SLKALSIHQVVSDVFGFPQSYIYEIFSNM 302
Query: 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347
F + C K+SP +L +N+LT + L ++ N L
Sbjct: 303 NIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLK- 361
Query: 348 SLPLDIG---NLKVVVGIDLSRNNLSDSIPTVI-GGLSNLAFFSLAYNKLQGSIPESLGD 403
L +K + +D+S+N++S +L +++ N L +I L
Sbjct: 362 ELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL-- 419
Query: 404 LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
++ LDL +N IP+ KL L+ LN++ N+LK +P G F +
Sbjct: 420 PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDG-IFDRLT 468
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 113 bits (284), Expect = 5e-27
Identities = 77/440 (17%), Positives = 163/440 (37%), Gaps = 34/440 (7%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL- 60
++N + L + + L+ LD+++N + + L LS N L
Sbjct: 51 IISHNRIQ-YLDISVFKFNQELEYLDLSHNKLVKISCHPTVNLKHL---DLSFNAFDALP 106
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN---------FDGPRHS 111
I ++ GN++ + L L +L I +L+ + L++
Sbjct: 107 ICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTE 166
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANL----RNLQWLDLS 167
+L ++ F + + + L + I+ ++ L N + +L+
Sbjct: 167 SLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLT 226
Query: 168 FNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS-TSLEYIYMPYCR-R 225
N + ++ + + L + ++ +L G L + S TSL+ + +
Sbjct: 227 LNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSD 286
Query: 226 SGRIPEEIG--NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCN 283
P+ N+ + ++ + K+ L N L ++ ++ +
Sbjct: 287 VFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCGH 346
Query: 284 LGRLVELQFYDNKLFGSIPACIG---KLSPLRNLLLHSNVLTYVIPS-TFLSLRDILVFN 339
L L L N+L + ++ L+ L + N ++Y + +L N
Sbjct: 347 LTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLN 405
Query: 340 FSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
SSN L ++ + +KV +DL N + SIP + L L ++A N+L+ S+P
Sbjct: 406 MSSNILTDTIFRCLPPRIKV---LDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460
Query: 399 E-SLGDLRSLEFLDLSNNSF 417
+ L SL+ + L N +
Sbjct: 461 DGIFDRLTSLQKIWLHTNPW 480
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 6e-21
Identities = 64/392 (16%), Positives = 124/392 (31%), Gaps = 38/392 (9%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS 111
S N L +P+D+ L + N + +I +L L L++ +N
Sbjct: 7 RSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ----- 58
Query: 112 NLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
+ +F +L L + N I NL+ LDLSFN
Sbjct: 59 --------------YLDISVFKFNQELEYLDLSHNKLV-KISCH--PTVNLKHLDLSFNA 101
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
+ L N LK + L+ L + +L+ S + + +
Sbjct: 102 FDA----LPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVL---GETYGEK 154
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
E+ L + T SL I T + + L + ++ + D+ C+ +
Sbjct: 155 EDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA 214
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
+ N ++ + + N + L + + S+ ++
Sbjct: 215 KLQTNPKLSNLTLNNIETTW--NSFIRILQLVWHTTVWYFSISNV---KLQGQLDFRDFD 269
Query: 351 LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
+LK + + + + SN+ + + + + L
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
D SNN + + + L LE L L N+LK
Sbjct: 330 DFSNNLLTDTVFENCGHLTELETLILQMNQLK 361
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 77.2 bits (190), Expect = 3e-15
Identities = 48/336 (14%), Positives = 106/336 (31%), Gaps = 23/336 (6%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
L ++ T + +L + + ++ + + + L N
Sbjct: 160 LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTN 219
Query: 80 NLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNAS---- 135
+ + ++ + H+ + + G + F+ S
Sbjct: 220 PKLSNLTLNNIETTWNSFIRILQL----VWHTTVWYFSISNVKLQGQLDFRDFDYSGTSL 275
Query: 136 -KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
LSI + ++ F N+ + + + + + +D
Sbjct: 276 KALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTR-----MVHMLCPSKISPFLHLD 330
Query: 195 LTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG---NLINLITMSLGINKLTG 251
+ N L + + G+L T LE + + + + + + +L + + N ++
Sbjct: 331 FSNNLLTDTVFENCGHL-TELETLILQMNQLK-ELSKIAEMTTQMKSLQQLDISQNSVSY 388
Query: 252 SIP-ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSP 310
+ L L + N L +I L R+ L + NK+ SIP + KL
Sbjct: 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCL--PPRIKVLDLHSNKIK-SIPKQVVKLEA 445
Query: 311 LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
L+ L + SN L V F L + +N +
Sbjct: 446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 65.3 bits (159), Expect = 2e-11
Identities = 38/179 (21%), Positives = 62/179 (34%), Gaps = 8/179 (4%)
Query: 11 SLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL--IPRDIGNL 68
+ + LD +NN +T V N EL + L NQL L I +
Sbjct: 314 MVHMLCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM 373
Query: 69 TSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNF-DGPRH---SNLERLYLERNNF 123
S + L + N++ + +L L + +N D ++ L L N
Sbjct: 374 KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNKI 433
Query: 124 SGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLS 182
+IP + L L + +N L +LQ + L N S + +LS
Sbjct: 434 K-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 491
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 3e-07
Identities = 34/182 (18%), Positives = 60/182 (32%), Gaps = 11/182 (6%)
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI- 353
+P + L + N ++ + S LSL + + S N + L + +
Sbjct: 9 KNGLIHVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-YLDISVF 65
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES--LGDLRSLEFLD 411
+ + +DLS N L I NL L++N ++P G++ L+FL
Sbjct: 66 KFNQELEYLDLSHNKLV-KIS--CHPTVNLKHLDLSFNAFD-ALPICKEFGNMSQLKFLG 121
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSPNL 471
LS L + L GE E +F+ S +
Sbjct: 122 LSTTHLEKSSVLPIAHLNIS-KVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHF 180
Query: 472 QV 473
+
Sbjct: 181 IL 182
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 116 bits (291), Expect = 8e-28
Identities = 64/383 (16%), Positives = 126/383 (32%), Gaps = 32/383 (8%)
Query: 92 LHNLEYLVLENNNFDGPRH---SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSF 147
+++ + + + G +N + + + + +P+ + + ++ +L +
Sbjct: 29 FYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQI 87
Query: 148 SGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
A +Q L + FN + + +N L V+ L N L +
Sbjct: 88 EEIDTYAFAYAHTIQKLYMGFNAIRYLPPHV-----FQNVPLLTVLVLERNDLSSLPRGI 142
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266
N L + M RI ++ +L + L N+LT + L + L
Sbjct: 143 FHNT-PKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLTH---VDLSLIPSLFHA 197
Query: 267 YLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP 326
+ N L +L + EL N + + L L L N LT
Sbjct: 198 NVSYNLLS-----TLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNLTDT-- 247
Query: 327 STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386
+ L+ ++ + S N L + ++ + + +S N L ++ + L
Sbjct: 248 AWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYGQPIPTLKVL 306
Query: 387 SLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446
L++N L + + LE L L +NS + L+ L LS N
Sbjct: 307 DLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLKLSTHHT---LKNLTLSHNDWD-CNS 361
Query: 447 SGESFANFSDNSFMGNSFLCGSP 469
F N + + C
Sbjct: 362 LRALFRNVARPAVDDADQHCKID 384
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 114 bits (286), Expect = 3e-27
Identities = 73/392 (18%), Positives = 129/392 (32%), Gaps = 46/392 (11%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
F N+T+ LP + +++ L++N+ + + + + N + L
Sbjct: 57 TFKNSTMR-KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLP 115
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSN 112
P N+ L+L N + +P I N L L + NNN F +
Sbjct: 116 PHVFQNVPLLTVLVL-ERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATT--S 172
Query: 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
L+ L L N + + + L + N ST+A ++ LD S N +
Sbjct: 173 LQNLQLSSNRLT-HVDLSLI--PSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN 224
Query: 173 S--------------STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI 218
+ L+ + L N L +DL+ N+L I+ + LE +
Sbjct: 225 VVRGPVNVELTILKLQHNNLTDTAWLLNYPGLVEVDLSYNELEKIMYHPFVKM-QRLERL 283
Query: 219 YMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP 278
Y+ R + + L + L N L + + + +L+ LYL N + ++
Sbjct: 284 YISNNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK 340
Query: 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
S L L N C + RN+ + L L
Sbjct: 341 LS--THHTLKNLTLSHNDW-----DCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCC 393
Query: 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS 370
S L I VV + ++ S
Sbjct: 394 KESDKPYLDRLLQYIALTSVVEKVQRAQGRCS 425
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 113 bits (283), Expect = 8e-27
Identities = 64/365 (17%), Positives = 127/365 (34%), Gaps = 32/365 (8%)
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG------PRHSNLE 114
I ++ + + E L+N + + +N+ +E
Sbjct: 19 IDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVE 78
Query: 115 RLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
L L I ++ F A + L + N+ P N+ L L L N L+S
Sbjct: 79 LLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSS 137
Query: 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI 233
+ N L + ++ N L I + TSL+ + + R + + +
Sbjct: 138 LPRGI-----FHNTPKLTTLSMSNNNLERIEDDTFQAT-TSLQNLQLSSNRLT-HVD--L 188
Query: 234 GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293
+ +L ++ N L+ +L ++ L N + + + L L+
Sbjct: 189 SLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGPVNV--ELTILKLQ 240
Query: 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI 353
N L + L + L N L ++ F+ ++ + S+N L +L L
Sbjct: 241 HNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLYG 297
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413
+ + +DLS N+L + L L +N + ++ L +L+ L LS
Sbjct: 298 QPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK--LSTHHTLKNLTLS 353
Query: 414 NNSFS 418
+N +
Sbjct: 354 HNDWD 358
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 108 bits (272), Expect = 2e-25
Identities = 64/366 (17%), Positives = 123/366 (33%), Gaps = 33/366 (9%)
Query: 118 LERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSE 177
R I S + + I + L N + + + + +
Sbjct: 10 KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 69
Query: 178 LSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI-GNL 236
L L + R +++++L Q+ I + +++ +YM + +P + N+
Sbjct: 70 L-----LDSFRQVELLNLNDLQIEEIDTYAFAYA-HTIQKLYMGFNAIR-YLPPHVFQNV 122
Query: 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296
L + L N L+ KL L + N LE D+ L LQ N+
Sbjct: 123 PLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNR 182
Query: 297 L----FGSIP------------ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNF 340
L IP + + + L N + V + L +
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLLSTLAIPIAVEELDASHNSINVVRGPVNVELTIL---KL 239
Query: 341 SSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400
N+L + N +V +DLS N L + + L ++ N+L ++
Sbjct: 240 QHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLV-ALNLY 296
Query: 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFM 460
+ +L+ LDLS+N + R+ + LE L L N + + + + +
Sbjct: 297 GQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLS-THHTLKNLTLS 353
Query: 461 GNSFLC 466
N + C
Sbjct: 354 HNDWDC 359
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 9e-23
Identities = 63/304 (20%), Positives = 106/304 (34%), Gaps = 17/304 (5%)
Query: 141 GIRTNSFSGTIPSTIANLRNLQWLD-LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199
G + + P NLQ+ ++ T ++ F N K++ +
Sbjct: 3 GQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNST 62
Query: 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISLG 258
+ + + + + +E + + + I + + +G N + P
Sbjct: 63 MRKLPAALLDSF-RQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120
Query: 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318
+ L L L +N L N +L L +N L + L+NL L S
Sbjct: 121 NVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSS 180
Query: 319 NVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIG 378
N LT+V S SL N S N L+ + V +D S N+++ +
Sbjct: 181 NRLTHVDLSLIPSLFHA---NVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRG--P 229
Query: 379 GLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSF 438
L L +N L L + L +DLS N + F K+ LE L +S
Sbjct: 230 VNVELTILKLQHNNLT-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISN 287
Query: 439 NRLK 442
NRL
Sbjct: 288 NRLV 291
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597 | Back alignment and structure |
|---|
Score = 75.3 bits (185), Expect = 1e-14
Identities = 42/269 (15%), Positives = 85/269 (31%), Gaps = 17/269 (6%)
Query: 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYK 270
+ Y P I + + + + L + +
Sbjct: 1 VGGQQRYNVKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKN 60
Query: 271 NKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFL 330
+ + L + ++ L D ++ ++ L + N + Y+ P F
Sbjct: 61 STMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQ 120
Query: 331 SLRDILVFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389
++ + V N L+ SLP I N + + +S NNL ++L L+
Sbjct: 121 NVPLLTVLVLERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLS 179
Query: 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE 449
N+L + L + SL ++S N S + + +E L+ S N + +
Sbjct: 180 SNRLT-HVD--LSLIPSLFHANVSYNLLS-----TLAIPIAVEELDASHNSIN-VVRGP- 229
Query: 450 SFAN-----FSDNSFMGNSFLCGSPNLQV 473
N+ ++L P L
Sbjct: 230 VNVELTILKLQHNNLTDTAWLLNYPGLVE 258
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 112 bits (282), Expect = 9e-27
Identities = 85/470 (18%), Positives = 152/470 (32%), Gaps = 46/470 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ N+++ L L L+ L +++N + Q+L + +SHN+L +
Sbjct: 58 SLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQNIS 116
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPH--EIGNLHNLEYLVLENN-----NFDGPRHSNLE 114
+ S R L L N+ +P E GNL L +L L + H +L
Sbjct: 117 C---CPMASLRHLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLS 172
Query: 115 RLYLE-RNNFSGTIPSFIFNASKLSILGIRTNS---FSGTIPSTIANLRNLQWLDLSFNY 170
+ L+ + + ++L + + FS + ++ L +LQ ++ N
Sbjct: 173 CILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLND 232
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNL-STSLEYIYMPYCRRSGRI 229
R L V +EY+ + + RI
Sbjct: 233 ENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERI 292
Query: 230 PEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVE 289
E SL I ++ S +
Sbjct: 293 DREEFTYSETALKSLMI-------------------EHVKNQVFLFSKEALYSVFAEMNI 333
Query: 290 LQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSL 349
+ C S L NV T + +L+ + N L +
Sbjct: 334 KMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK-NF 392
Query: 350 PLDIG---NLKVVVGIDLSRNNL-SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405
N+ + +D+S N+L S + ++ +L+ N L GS+ L
Sbjct: 393 FKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--PP 450
Query: 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
++ LDL NN IP+ L L+ LN++ N+LK +P G F +
Sbjct: 451 KVKVLDLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDG-VFDRLT 497
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 94.9 bits (236), Expect = 6e-21
Identities = 69/443 (15%), Positives = 140/443 (31%), Gaps = 68/443 (15%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFDG-PR 109
LS N ++ L DI L+ R L L +N + + + +LEYL + +N
Sbjct: 59 LSQNSISELRMPDISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQNISC 117
Query: 110 H--SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLS 167
++L L L N+F +P + NL L +L LS
Sbjct: 118 CPMASLRHLDLSFNDFD-VLP----------------------VCKEFGNLTKLTFLGLS 154
Query: 168 FNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSG 227
L L + ++DL + G S+ +T++ ++
Sbjct: 155 AAKFRQ----LDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFS 210
Query: 228 RIPEEIGN---LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNL 284
N + L + L + + L + +E + S+
Sbjct: 211 VQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLF 270
Query: 285 -----GRLVELQFYDNKLFGSIP-----ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334
+ L Y+ + I L L + + V + + + +
Sbjct: 271 QFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAE 330
Query: 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
+ + S + + + ++ ++N +DS+ L L L N L+
Sbjct: 331 MNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
Query: 395 GSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY----LEYLNLSFNRLKGEIPSGES 450
+ + +++ L+ + S + ++++ + LNLS N L G +
Sbjct: 391 -NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV----- 444
Query: 451 FANFSDNSFMGNSFLCGSPNLQV 473
F C P ++V
Sbjct: 445 -------------FRCLPPKVKV 454
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 81.5 bits (201), Expect = 1e-16
Identities = 65/408 (15%), Positives = 122/408 (29%), Gaps = 56/408 (13%)
Query: 44 CQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENN 103
+ + S+ LT +P+D+ +AL L N++ L
Sbjct: 30 NELESMVDYSNRNLTH-VPKDL--PPRTKALSLSQNSI----------------SELRMP 70
Query: 104 NFDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQ 162
+ S L L L N ++ +F L L + N I + +L+
Sbjct: 71 DIS--FLSELRVLRLSHNRIR-SLDFHVFLFNQDLEYLDVSHNRLQ-NISC--CPMASLR 124
Query: 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPY 222
LDLSFN F N L + L+ + + + +L S + +
Sbjct: 125 HLDLSFNDFDVLPVCKEF----GNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDL-V 179
Query: 223 CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC 282
E + N + L + + + L L L KL
Sbjct: 180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN-------- 231
Query: 283 NLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT---YVIPSTFLSLRDILVFN 339
+ + + + + + L N+ L T V F R + N
Sbjct: 232 ---------DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN 282
Query: 340 FSSNSLNGSLPLDIGN-----LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
+ ++ + + LK ++ + S + + + L+ +
Sbjct: 283 IYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTP 342
Query: 395 GSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442
S FL+ + N F+ + + L L+ L L N LK
Sbjct: 343 FIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLK 390
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 59.5 bits (144), Expect = 1e-09
Identities = 39/234 (16%), Positives = 83/234 (35%), Gaps = 24/234 (10%)
Query: 1 MDFANNTLTGSLPDDMCQH----LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQ 56
++ N T+T + + + L L + N E+ LS +
Sbjct: 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISD 340
Query: 57 LTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF-----DGPRHS 111
+ + +S L N + L L+ L+L+ N
Sbjct: 341 TPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTK 400
Query: 112 NLERLYLERNNFSGTIPSFIFNA-----SKLSILGIRTNSFSGTIPSTIANLRNLQWLDL 166
N+ L + ++ S ++ + +L + +N +G++ + ++ LDL
Sbjct: 401 NMSSLETL-DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDL 457
Query: 167 SFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
N + S +++ L L+ +++ NQL + L TSL+YI++
Sbjct: 458 HNNRIMSIPKDVTHLQ------ALQELNVASNQLKSVPDGVFDRL-TSLQYIWL 504
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562 | Back alignment and structure |
|---|
Score = 51.4 bits (123), Expect = 5e-07
Identities = 28/107 (26%), Positives = 56/107 (52%), Gaps = 7/107 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNL-WQCQELIAISLSHNQLTGL 60
D + N+L D C + L++++N +TG V R L + + L L +N++ +
Sbjct: 409 DVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLPPKVKVL---DLHNNRIMSI 465
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFD 106
P+D+ +L + + L + +N L +P + L +L+Y+ L +N +D
Sbjct: 466 -PKDVTHLQALQELNVASNQL-KSVPDGVFDRLTSLQYIWLHDNPWD 510
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 100 bits (252), Expect = 9e-24
Identities = 51/270 (18%), Positives = 102/270 (37%), Gaps = 17/270 (6%)
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN 247
+ ++DL N++ I NL +L + + + S P L+ L + L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 110
Query: 248 KLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSI--PACI 305
+L +P + + LQ L +++N++ L +++ ++ N L S
Sbjct: 111 QLK-ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAF 167
Query: 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365
+ L + + +T + SL ++ + N + + L + + LS
Sbjct: 168 QGMKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLS 224
Query: 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF 425
N++S + +L L NKL +P L D + ++ + L NN+ S F
Sbjct: 225 FNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDF 283
Query: 426 ------EKLLYLEYLNLSFNRLK-GEIPSG 448
K ++L N ++ EI
Sbjct: 284 CPPGYNTKKASYSGVSLFSNPVQYWEIQPS 313
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 93.5 bits (233), Expect = 4e-21
Identities = 59/294 (20%), Positives = 112/294 (38%), Gaps = 33/294 (11%)
Query: 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80
P LD+ NN +T + + L + L +N+++ + P L L L N
Sbjct: 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 111
Query: 81 LIGEIPHEIGNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNF-SGTIPSFI 131
L E+P ++ L+ L + N F+G + + + L N S I +
Sbjct: 112 L-KELPEKM--PKTLQELRVHENEITKVRKSVFNG--LNQMIVVELGTNPLKSSGIENGA 166
Query: 132 F-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNL 190
F KLS + I + + TIP + +L L L N +T + SL+ NL
Sbjct: 167 FQGMKKLSYIRIADTNIT-TIPQGL--PPSLTELHLDGNKITKVDAA-----SLKGLNNL 218
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT 250
+ L+ N + + S+ N L +++ + ++P + + + + L N ++
Sbjct: 219 AKLGLSFNSISAVDNGSLANT-PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 276
Query: 251 G------SIPISLGKLQKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDNK 296
P K G+ L+ N ++ P + + +Q + K
Sbjct: 277 AIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 93.1 bits (232), Expect = 4e-21
Identities = 62/232 (26%), Positives = 100/232 (43%), Gaps = 15/232 (6%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
C G ++P+++ + + L NK+T L+ L L L NK+ P
Sbjct: 37 QCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 94
Query: 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFN 339
+ L +L L N+L +P L+ L +H N +T V S F L ++V
Sbjct: 95 AFAPLVKLERLYLSKNQL-KELPE--KMPKTLQELRVHENEITKVRKSVFNGLNQMIVVE 151
Query: 340 FSSNSLNGSLPLDIG---NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396
+N L S ++ G +K + I ++ N++ +IP G +L L NK+
Sbjct: 152 LGTNPLK-SSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITKV 207
Query: 397 IPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
SL L +L L LS NS S S +L L+L+ N+L ++P G
Sbjct: 208 DAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGG 258
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 90.4 bits (225), Expect = 4e-20
Identities = 52/282 (18%), Positives = 100/282 (35%), Gaps = 44/282 (15%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVT---GPVPRNLWQCQELIAISLSHNQLT 58
NN ++ + L +L+ L ++ N + +P+ L QEL + N++T
Sbjct: 82 ILINNKIS-KISPGAFAPLVKLERLYLSKNQLKELPEKMPKTL---QEL---RVHENEIT 134
Query: 59 GLIPRDIGNLTSARALLLGNNNL-IGEIPHEI-GNLHNLEYLVLENNNFDG-PRH--SNL 113
+ L + LG N L I + + L Y+ + + N P+ +L
Sbjct: 135 KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLPPSL 194
Query: 114 ERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
L+L+ N + + + + L+ LG+ NS S ++AN +L+ L L+ N L
Sbjct: 195 TELHLDGNKIT-KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV 253
Query: 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
L + + ++V+ L N + I + P
Sbjct: 254 KVP------GGLADHKYIQVVYLHNNNISAIGSNDFCP-------------------PGY 288
Query: 233 IGNLINLITMSLGINKLTGSI--PISLGKLQKLQGLYLYKNK 272
+ +SL N + P + + + L K
Sbjct: 289 NTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 1e-09
Identities = 34/171 (19%), Positives = 66/171 (38%), Gaps = 19/171 (11%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ A+ +T ++P + P L L ++ N +T +L L + LS N ++ +
Sbjct: 176 IRIADTNIT-TIPQGL---PPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAV 231
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLER 120
+ N R L L NN L+ ++P + + ++ + L NNN +
Sbjct: 232 DNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS----------AIGS 280
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTI--PSTIANLRNLQWLDLSFN 169
N+F P + + S + + +N PST + + L
Sbjct: 281 NDFCP--PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 6e-07
Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 4/87 (4%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+ S L +P + + A L NK+ +L++L L L NN S
Sbjct: 36 VQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
P +F L+ LE L LS N+LK E+P
Sbjct: 93 PGAFAPLVKLERLYLSKNQLK-ELPEK 118
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 99.8 bits (249), Expect = 9e-23
Identities = 58/375 (15%), Positives = 116/375 (30%), Gaps = 47/375 (12%)
Query: 72 RALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG----PRHSNLERLYLERNNFSGTI 127
+ + + L L L N++ + + L +L NN + T+
Sbjct: 21 ASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDMTGIEKLTGLTKLICTSNNIT-TL 79
Query: 128 PSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNC 187
+ + L+ L +N + + + L L +L+ N LT +
Sbjct: 80 D--LSQNTNLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLTK--------LDVSQN 126
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN 247
L ++ N L I S T L + ++ ++ L T+ N
Sbjct: 127 PLLTYLNCARNTLTEIDVSHN----TQLTELDCHLNKKIT--KLDVTPQTQLTTLDCSFN 180
Query: 248 KLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
K+T + + + + L L N + + L +L L NKL I +
Sbjct: 181 KITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQLTFLDCSSNKL-TEID--VTP 231
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367
L+ L N LT + ST L + + L +D+ + ++
Sbjct: 232 LTQLTYFDCSVNPLTELDVSTLSKLTTL---HCIQTDLLE---IDLTHNTQLIYFQAEGC 285
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEK 427
+ + + L + + L L +L L+N +
Sbjct: 286 RKIKELD--VTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELTEL---DVSH 337
Query: 428 LLYLEYLNLSFNRLK 442
L+ L+ ++
Sbjct: 338 NTKLKSLSCVNAHIQ 352
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 7e-21
Identities = 66/427 (15%), Positives = 126/427 (29%), Gaps = 95/427 (22%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
+ L L +LD +N+ +T + + L + + N +T L D+ T+ L
Sbjct: 39 EQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNNITTL---DLSQNTNLTYLACD 93
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNN---FDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
+N L + + L L YL + N D ++ L L RN + I
Sbjct: 94 SNKL-TNLD--VTPLTKLTYLNCDTNKLTKLDVSQNPLLTYLNCARNTLT-EID------ 143
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
+++ L LD N + + L +D
Sbjct: 144 --------------------VSHNTQLTELDCHLNKKIT-------KLDVTPQTQLTTLD 176
Query: 195 LTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254
+ N++ + ++ L ++ N +T
Sbjct: 177 CSFNKITEL----------------------------DVSQNKLLNRLNCDTNNITK--- 205
Query: 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL 314
+ L + +L L NKL I + L +L N L + + LS L L
Sbjct: 206 LDLNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPL-TELD--VSTLSKLTTL 259
Query: 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP 374
L + + L F + LD+ + + +D ++ +
Sbjct: 260 HCIQTDLLEIDLTHNTQLI-----YFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT-ELD 313
Query: 375 TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYL 434
+ L + L +L + + L+ L N F K+ L
Sbjct: 314 --LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKSLSCVNAHIQDFSS--VGKIPALNNN 366
Query: 435 NLSFNRL 441
+ +
Sbjct: 367 FEAEGQT 373
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 92.8 bits (231), Expect = 2e-20
Identities = 75/453 (16%), Positives = 144/453 (31%), Gaps = 76/453 (16%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
+ L L L +N++T +L Q L ++ N+LT L D+ LT L
Sbjct: 61 EKLTGLTKLICTSNNITTL---DLSQNTNLTYLACDSNKLTNL---DVTPLTKLTYLNCD 114
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNN---FDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
N L ++ L YL N D ++ L L N + +
Sbjct: 115 TNKL---TKLDVSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKLD--VTPQ 169
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
++L+ L N + ++ + L L+ N +T L L +D
Sbjct: 170 TQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNITK--------LDLNQNIQLTFLD 218
Query: 195 LTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254
+ N+L I ++ L L +N LT
Sbjct: 219 CSSNKLTEI----------------------------DVTPLTQLTYFDCSVNPLT---E 247
Query: 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL 314
+ + L KL L+ + L I L + +L+ Q + + + + L L
Sbjct: 248 LDVSTLSKLTTLHCIQTDLL-EID--LTHNTQLIYFQAEGCRKIKELD--VTHNTQLYLL 302
Query: 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP 374
+ +T + S L ++ L LD+ + + + ++ D
Sbjct: 303 DCQAAGITELDLSQNPKLV---YLYLNNTELTE---LDVSHNTKLKSLSCVNAHIQDF-- 354
Query: 375 TVIGGLSNLAFFSLAYNKLQGSIPESLGDLR-----SLEFLDLSNNSFSGFIPRSFEKLL 429
+ +G + L A + E+L + S + LD N + I +
Sbjct: 355 SSVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFGNPMN--IEPGDGGVY 412
Query: 430 YLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462
+++ L + P+ + + +G
Sbjct: 413 DQATNTITWENLSTDNPAVTYTFTSENGAIVGT 445
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457 | Back alignment and structure |
|---|
Score = 79.3 bits (196), Expect = 4e-16
Identities = 53/330 (16%), Positives = 97/330 (29%), Gaps = 55/330 (16%)
Query: 144 TNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGI 203
T + L L LD + +T ++ + L + T N + +
Sbjct: 27 AFEMQATDTISEEQLATLTSLDCHNSSITD-------MTGIEKLTGLTKLICTSNNITTL 79
Query: 204 LPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKL 263
++ NL ++ NKLT + + L KL
Sbjct: 80 ----------------------------DLSQNTNLTYLACDSNKLTN---LDVTPLTKL 108
Query: 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTY 323
L NKL + L L N L I + + L L H N
Sbjct: 109 TYLNCDTNKLT---KLDVSQNPLLTYLNCARNTL-TEID--VSHNTQLTELDCHLNKKIT 162
Query: 324 VIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNL 383
+ + + S N + LD+ K++ ++ NN++ + + L
Sbjct: 163 KLD--VTPQTQLTTLDCSFNKITE---LDVSQNKLLNRLNCDTNNIT-KLD--LNQNIQL 214
Query: 384 AFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG 443
F + NKL I + L L + D S N + + KL L + +
Sbjct: 215 TFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTLSKLTTLHCIQTDLLEIDL 271
Query: 444 EIPSGESFANFSDNSFMGNSFLCGSPNLQV 473
+ + + + + L +
Sbjct: 272 THNTQLIYFQAEGCRKIKELDVTHNTQLYL 301
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 100 bits (249), Expect = 2e-22
Identities = 57/296 (19%), Positives = 107/296 (36%), Gaps = 35/296 (11%)
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
+I I N +L + +N ++ + ++ S+ + N+ +L
Sbjct: 2 SIMLPINNNFSLS-QNSFYNTISGTYADY--FSAWDKWEKQALPGENRNEAVSLLKEC-- 56
Query: 210 NLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269
L + + S +P+ + + + + N L S+P L+ L
Sbjct: 57 -LINQFSELQLNRLNLS-SLPDNLPP--QITVLEITQNALI-SLPELPASLEYL---DAC 108
Query: 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTF 329
N+L ++P+ +L L +N+L +P L + +N LT +P
Sbjct: 109 DNRLS-TLPELPASL---KHLDVDNNQL-TMLPELPALL---EYINADNNQLTM-LPELP 159
Query: 330 LSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNL----AF 385
SL + V +N L LP +L+ +D+S N L S+P V + F
Sbjct: 160 TSLEVLSV---RNNQLT-FLPELPESLEA---LDVSTNLLE-SLPAVPVRNHHSEETEIF 211
Query: 386 FSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
F N++ IPE++ L + L +N S I S + +
Sbjct: 212 FRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYF 266
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 95.0 bits (236), Expect = 6e-21
Identities = 61/404 (15%), Positives = 130/404 (32%), Gaps = 47/404 (11%)
Query: 48 IAISLSHNQLTGL---IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN 104
++ + +N ++G N + + ++ L L N
Sbjct: 13 LSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLK--ECLINQFSELQLNRLN 70
Query: 105 FDG-PRH--SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNL 161
P + + L + +N ++P + L L N S T+P A+L++L
Sbjct: 71 LSSLPDNLPPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLS-TLPELPASLKHL 125
Query: 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMP 221
D+ N LT + L+ I+ NQL LP +L E + +
Sbjct: 126 ---DVDNNQLTMLPELPA---------LLEYINADNNQLTM-LPELPTSL----EVLSVR 168
Query: 222 YCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ----GLYLYKNKLEGSI 277
+ +PE +L L + N L S+P + + +N++ I
Sbjct: 169 NNQ-LTFLPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HI 222
Query: 278 PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337
P+++ +L + DN L I + + + + + R +
Sbjct: 223 PENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPL-- 280
Query: 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397
++++ P + + + +++ + LS+ + +
Sbjct: 281 ----ADAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLDRLSDTVSARNTSG-FREQV 335
Query: 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L L + L + + + S E + L + NL L
Sbjct: 336 AAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLL 379
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 94.3 bits (234), Expect = 1e-20
Identities = 63/344 (18%), Positives = 104/344 (30%), Gaps = 77/344 (22%)
Query: 85 IPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRT 144
I I N +L N + Y + S K ++ G
Sbjct: 3 IMLPINNNFSLSQNSFYNT---------ISGTYAD-------YFSAWDKWEKQALPGENR 46
Query: 145 NSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL 204
N + + L L+ L+S L + V+++T N L
Sbjct: 47 NEAVSLLKE--CLINQFSELQLNRLNLSSLPDNL--------PPQITVLEITQNALI--- 93
Query: 205 PSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264
+PE +L L N+L+ ++P L+ L
Sbjct: 94 -----------------------SLPELPASLEYL---DACDNRLS-TLPELPASLKHL- 125
Query: 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYV 324
+ N+L +P+ L + +N+L +P L L + +N LT+
Sbjct: 126 --DVDNNQLT-MLPELPALL---EYINADNNQL-TMLPELPTSL---EVLSVRNNQLTF- 174
Query: 325 IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNL----KVVVGIDLSRNNLSDSIPTVIGGL 380
+P SL + + S+N L SLP + + N ++ IP I L
Sbjct: 175 LPELPESLEAL---DVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSL 229
Query: 381 SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424
L N L I ESL + FS +
Sbjct: 230 DPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ 273
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 88.1 bits (218), Expect = 1e-18
Identities = 58/415 (13%), Positives = 116/415 (27%), Gaps = 87/415 (20%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
N L + + + + L +N +++ +P NL ++ + ++ N L L P
Sbjct: 46 RNEAVSLLKECL---INQFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALISL-PEL 98
Query: 65 IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFS 124
+L L +N L +P +L+ L ++ N +
Sbjct: 99 PASLEY---LDACDNRLS-TLPELPA---------------------SLKHLDVDNNQLT 133
Query: 125 GTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSL 184
+P A L++++ N LT +
Sbjct: 134 -------------------------MLPELPA---LLEYINADNNQLTMLPELPT----- 160
Query: 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITM-- 242
+L+V+ + NQL LP + LE + + +P +
Sbjct: 161 ----SLEVLSVRNNQLTF-LPELPES----LEALDVSTNLLE-SLPAVPVRNHHSEETEI 210
Query: 243 --SLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGS 300
N++T IP ++ L + L N L S + F
Sbjct: 211 FFRCRENRIT-HIPENILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSM 268
Query: 301 IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVV 360
L + + S + +N+ + L + +
Sbjct: 269 SDGQQNTLHRPLADAVTAW-FPENKQSDVSQIWHAFEHEEHANTFSAFLD-RLSDTVSAR 326
Query: 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
R ++ + LS A + ES D +L + +L
Sbjct: 327 NTSGFREQVA----AWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKT 377
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 82.7 bits (204), Expect = 5e-17
Identities = 43/223 (19%), Positives = 79/223 (35%), Gaps = 33/223 (14%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
L+ SLPD++ + L+I N + +P + L N+L+ L
Sbjct: 65 QLNRLNLS-SLPDNLPPQI---TVLEITQNALI-SLPELPASLEYL---DACDNRLSTL- 115
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRHSNLERLYLE 119
P +L L + NN L +P LEY+ +NN ++LE L +
Sbjct: 116 PELPASLKH---LDVDNNQLT-MLPELPA---LLEYINADNNQLTMLPELPTSLEVLSVR 168
Query: 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ----WLDLSFNYLTSST 175
N + +P + L L + TN ++P+ + + + N +T
Sbjct: 169 NNQLT-FLPELPES---LEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCRENRIT--- 220
Query: 176 SELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI 218
++ + I L N L + S+ + +Y
Sbjct: 221 ---HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYH 260
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 80.8 bits (199), Expect = 2e-16
Identities = 52/218 (23%), Positives = 88/218 (40%), Gaps = 28/218 (12%)
Query: 233 IGNLINLITMSL--GINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
I N +L S I+ + K +K +N+ + + C + + EL
Sbjct: 7 INNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKE--CLINQFSEL 64
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
Q L S+P + + L + N L +P SL + N L+ +LP
Sbjct: 65 QLNRLNL-SSLPDNLPPQ--ITVLEITQNALI-SLPELPASLE---YLDACDNRLS-TLP 116
Query: 351 LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
+LK +D+ N L+ +P + L + + N+L +PE SLE L
Sbjct: 117 ELPASLK---HLDVDNNQLT-MLPELPALLEYI---NADNNQLT-MLPELPT---SLEVL 165
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+ NN + F+P E L E L++S N L+ +P+
Sbjct: 166 SVRNNQLT-FLPELPESL---EALDVSTNLLE-SLPAV 198
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571 | Back alignment and structure |
|---|
Score = 68.8 bits (168), Expect = 2e-12
Identities = 36/207 (17%), Positives = 72/207 (34%), Gaps = 15/207 (7%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ NN LT LP+ L+ L + NN +T +P + L +S N L L
Sbjct: 146 NADNNQLT-MLPEL----PTSLEVLSVRNNQLTF-LPELPESLEAL---DVSTNLLESL- 195
Query: 62 PRDIGNLTSARALLLG---NNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYL 118
P + + N I IP I +L ++LE+N +L +
Sbjct: 196 PAVPVRNHHSEETEIFFRCRENRITHIPENILSLDPTCTIILEDNPLSSRIRESLSQQTA 255
Query: 119 ERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178
+ + I + + + ++ ++ + P + + W + + +
Sbjct: 256 QPDYHGPRIYFSMSDGQQNTLHRPLADAVTAWFPENKQSDVSQIWHAFE--HEEHANTFS 313
Query: 179 SFLSSLRNCRNLKVIDLTGNQLHGILP 205
+FL L + + + Q+ L
Sbjct: 314 AFLDRLSDTVSARNTSGFREQVAAWLE 340
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 96.2 bits (240), Expect = 3e-22
Identities = 58/256 (22%), Positives = 98/256 (38%), Gaps = 17/256 (6%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLE--GSI 277
C G +P I + + L NKL KL +L L L N L G
Sbjct: 13 RCNSKGLTSVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCC 70
Query: 278 PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLRDIL 336
S L L N + ++ + L L +L + L + S FLSLR+++
Sbjct: 71 SQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLI 129
Query: 337 VFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSI-PTVIGGLSNLAFFSLAYNKLQ 394
+ S I L + + ++ N+ ++ P + L NL F L+ +L+
Sbjct: 130 YLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE 188
Query: 395 GSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
P + L SL+ L++S+N+F ++ L L+ L+ S N + +F
Sbjct: 189 QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQ-ELQHF 246
Query: 455 SDN----SFMGNSFLC 466
+ + N F C
Sbjct: 247 PSSLAFLNLTQNDFAC 262
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 6e-22
Identities = 49/231 (21%), Positives = 96/231 (41%), Gaps = 21/231 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVT--GPVPRNLWQCQELIAISLSHNQLTG 59
+ +N L SLP + L +L L +++N ++ G ++ + L + LS N +
Sbjct: 34 ELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT 92
Query: 60 LIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRH 110
+ + L L ++NL + +L NL YL + + + F+G
Sbjct: 93 -MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-- 149
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
S+LE L + N+F IF L+ L + P+ +L +LQ L++S N
Sbjct: 150 SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHN 209
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
S + + +L+V+D + N + + + +SL ++ +
Sbjct: 210 NFFSLDT-----FPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNL 255
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 95.1 bits (237), Expect = 6e-22
Identities = 55/263 (20%), Positives = 91/263 (34%), Gaps = 11/263 (4%)
Query: 185 RNCR-NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMS 243
C + I L + P+ + +S + + + L L +S
Sbjct: 3 SRCSCSGTEIRCNSKGLTSV-PT---GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLS 58
Query: 244 LGINKLT--GSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSI 301
L N L+ G S L+ L L N + ++ + L +L L F + L
Sbjct: 59 LSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMS 117
Query: 302 PACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI-GNLKVV 359
+ L L L + F L + V + NS + DI L+ +
Sbjct: 118 EFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNL 177
Query: 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419
+DLS+ L PT LS+L ++++N L SL+ LD S N
Sbjct: 178 TFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMT 237
Query: 420 FIPRSFEKLLY-LEYLNLSFNRL 441
+ + L +LNL+ N
Sbjct: 238 SKKQELQHFPSSLAFLNLTQNDF 260
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 4e-19
Identities = 54/277 (19%), Positives = 81/277 (29%), Gaps = 50/277 (18%)
Query: 46 ELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF 105
+ L N+L L LT L L +N L + + +
Sbjct: 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSN--------------GLSFKGCCSQSD 74
Query: 106 DGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165
G ++L+ L L N T+ S L L+ LD
Sbjct: 75 FG--TTSLKYLDLSFNGVI-------------------------TMSSNFLGLEQLEHLD 107
Query: 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225
+ L +S S + RNL +D++ L +SLE + M
Sbjct: 108 FQHSNLKQ----MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSF 162
Query: 226 SGRIPEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNL 284
+I L NL + L +L P + L LQ L + N L
Sbjct: 163 QENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCL 222
Query: 285 GRLVELQFYDNKLFGSIPACI--GKLSPLRNLLLHSN 319
L L + N + + S L L L N
Sbjct: 223 NSLQVLDYSLNHI-MTSKKQELQHFPSSLAFLNLTQN 258
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 83.1 bits (206), Expect = 8e-18
Identities = 53/242 (21%), Positives = 91/242 (37%), Gaps = 14/242 (5%)
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTN--SFSGTIPSTIANLRNLQWLDLS 167
S+ RL LE N ++P +F ++L+ L + +N SF G + +L++LDLS
Sbjct: 28 SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLS 86
Query: 168 FNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSG 227
FN + + +S L L +D + L + S+ +L Y+ + +
Sbjct: 87 FNGVITMSSNFLGLEQLE------HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTR- 139
Query: 228 RIPEEI-GNLINLITMSLGINKLTGSI-PISLGKLQKLQGLYLYKNKLEGSIPDSLCNLG 285
I L +L + + N + P +L+ L L L + +LE P + +L
Sbjct: 140 VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 199
Query: 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIL-VFNFSSNS 344
L L N F L+ L+ L N + L N + N
Sbjct: 200 SLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259
Query: 345 LN 346
Sbjct: 260 FA 261
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306 | Back alignment and structure |
|---|
Score = 75.0 bits (185), Expect = 4e-15
Identities = 40/208 (19%), Positives = 78/208 (37%), Gaps = 38/208 (18%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQ-CQELIAISLSHNQLTGL 60
D + N + ++ + L +L+ LD ++++ +++ + LI + +SH
Sbjct: 84 DLSFNGVI-TMSSNF-LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVA 141
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFDGPRH------SNL 113
L+S L + N+ +I L NL +L L + S+L
Sbjct: 142 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 201
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
+ L + NNF ++ +F + L +LQ LD S N++ +
Sbjct: 202 QVLNMSHNNFF-SLDTFPY-----------------------KCLNSLQVLDYSLNHIMT 237
Query: 174 STSELSFLSSLRNCRNLKVIDLTGNQLH 201
S + L +L ++LT N
Sbjct: 238 SKKQE--LQHFP--SSLAFLNLTQNDFA 261
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 96.4 bits (240), Expect = 1e-21
Identities = 54/251 (21%), Positives = 93/251 (37%), Gaps = 12/251 (4%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
C R +P+ I N ++L N++ S L+ L+ L L +N +
Sbjct: 49 ICVRKNLREVPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIG 106
Query: 280 SLCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
+ L L L+ +DN+L +IP LS L+ L L +N + + F + +
Sbjct: 107 AFNGLANLNTLELFDNRL-TTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRL 165
Query: 339 NFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397
+ + L + ++L+ NL IP + L L L+ N L
Sbjct: 166 DLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIR 223
Query: 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFS 455
P S L L+ L + + +F+ L L +NL+ N L +P +
Sbjct: 224 PGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLT-LLPHDLFTPLHHLE 282
Query: 456 DNSFMGNSFLC 466
N + C
Sbjct: 283 RIHLHHNPWNC 293
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 2e-21
Identities = 53/229 (23%), Positives = 84/229 (36%), Gaps = 22/229 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ N + + + +HL L+ L ++ NH+ L + L N+LT +
Sbjct: 70 NLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIP 128
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN---------FDGPRHS 111
L+ + L L NN I IP + +L L L F+G S
Sbjct: 129 NGAFVYLSKLKELWLRNNP-IESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEG--LS 185
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
NL L L N IP+ KL L + N S P + L +LQ L + + +
Sbjct: 186 NLRYLNLAMCNLR-EIPNLT-PLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQI 243
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
+ N ++L I+L N L + L LE I++
Sbjct: 244 QVIERN-----AFDNLQSLVEINLAHNNLTLLPHDLFTPL-HHLERIHL 286
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 94.8 bits (236), Expect = 4e-21
Identities = 61/266 (22%), Positives = 98/266 (36%), Gaps = 26/266 (9%)
Query: 17 CQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLL 76
C + + ++ VP + ++L NQ+ + +L L L
Sbjct: 39 CSCSNQFSKVICVRKNLRE-VPDGIST--NTRLLNLHENQIQIIKVNSFKHLRHLEILQL 95
Query: 77 GNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNFSGTI 127
+ N I I L NL L L +N F L+ L+L N +I
Sbjct: 96 -SRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLS--KLKELWLRNNPIE-SI 151
Query: 128 PSFIFNA-SKLSILGI-RTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLR 185
PS+ FN L L + S L NL++L+L+ L + +L
Sbjct: 152 PSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE-------IPNLT 204
Query: 186 NCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245
L +DL+GN L I P S L L+ ++M + NL +L+ ++L
Sbjct: 205 PLIKLDELDLSGNHLSAIRPGSFQGL-MHLQKLWMIQSQIQVIERNAFDNLQSLVEINLA 263
Query: 246 INKLTGSIPISLGKLQKLQGLYLYKN 271
N LT L L+ ++L+ N
Sbjct: 264 HNNLTLLPHDLFTPLHHLERIHLHHN 289
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 76.3 bits (188), Expect = 4e-15
Identities = 42/207 (20%), Positives = 80/207 (38%), Gaps = 39/207 (18%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSH-NQLTGL 60
+ +N LT ++P+ +L +L+ L + NN + + L + L +L+ +
Sbjct: 118 ELFDNRLT-TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI 176
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG-PRHS-----NLE 114
L++ R L L NL EIP+ + L L+ L L N+ S +L+
Sbjct: 177 SEGAFEGLSNLRYLNLAMCNLR-EIPN-LTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQ 234
Query: 115 RLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
+L++ ++ I + NL++L ++L+ N LT
Sbjct: 235 KLWMIQSQIQ-VIE-----------------------RNAFDNLQSLVEINLAHNNLTLL 270
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLH 201
+L +L+ I L N +
Sbjct: 271 PHDL-----FTPLHHLERIHLHHNPWN 292
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440 | Back alignment and structure |
|---|
Score = 58.6 bits (142), Expect = 2e-09
Identities = 32/146 (21%), Positives = 53/146 (36%), Gaps = 6/146 (4%)
Query: 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN 368
+ ++ L V + R + N N + +L+ + + LSRN+
Sbjct: 43 NQFSKVICVRKNLREVPDGISTNTRLL---NLHENQIQIIKVNSFKHLRHLEILQLSRNH 99
Query: 369 LSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428
+ GL+NL L N+L + L L+ L L NN +F ++
Sbjct: 100 IRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRI 159
Query: 429 LYLEYLNLS-FNRLKGEIPSGESFAN 453
L L+L RL I G +F
Sbjct: 160 PSLRRLDLGELKRLS-YISEG-AFEG 183
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 96.0 bits (239), Expect = 2e-21
Identities = 46/229 (20%), Positives = 78/229 (34%), Gaps = 22/229 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ N + + D +HL L+ L + N + L + L N LT +
Sbjct: 81 NLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIP 139
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN---------FDGPRHS 111
L+ R L L NN I IP + +L L L F+G
Sbjct: 140 SGAFEYLSKLRELWLRNNP-IESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEG--LF 196
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
NL+ L L N +P+ L L + N F P + L +L+ L + + +
Sbjct: 197 NLKYLNLGMCNIK-DMPNLT-PLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQV 254
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
+ + +L ++L N L + L L +++
Sbjct: 255 SLIERN-----AFDGLASLVELNLAHNNLSSLPHDLFTPL-RYLVELHL 297
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 95.6 bits (238), Expect = 3e-21
Identities = 56/267 (20%), Positives = 101/267 (37%), Gaps = 28/267 (10%)
Query: 17 CQHLPRLQALDINNNHVTGPVPRNL-WQCQELIAISLSHNQLTGLIPRDIGNLTSARALL 75
C + + ++ VP+ + + L +L N + + +L L
Sbjct: 50 CSCSNQFSKVVCTRRGLSE-VPQGIPSNTRYL---NLMENNIQMIQADTFRHLHHLEVLQ 105
Query: 76 LGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNFSGT 126
LG N+ I +I L +L L L +N F+ L L+L N +
Sbjct: 106 LGRNS-IRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLS--KLRELWLRNNPIE-S 161
Query: 127 IPSFIFNA-SKLSILGI-RTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSL 184
IPS+ FN L L + L NL++L+L + + +L
Sbjct: 162 IPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-------MPNL 214
Query: 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSL 244
L+ ++++GN I P S L +SL+ +++ + S L +L+ ++L
Sbjct: 215 TPLVGLEELEMSGNHFPEIRPGSFHGL-SSLKKLWVMNSQVSLIERNAFDGLASLVELNL 273
Query: 245 GINKLTGSIPISLGKLQKLQGLYLYKN 271
N L+ L+ L L+L+ N
Sbjct: 274 AHNNLSSLPHDLFTPLRYLVELHLHHN 300
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 94.4 bits (235), Expect = 6e-21
Identities = 55/251 (21%), Positives = 93/251 (37%), Gaps = 12/251 (4%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
C R G +P+ I N ++L N + + L L+ L L +N +
Sbjct: 60 VCTRRGLSEVPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVG 117
Query: 280 SLCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
+ L L L+ +DN L IP+ LS LR L L +N + + F + ++
Sbjct: 118 AFNGLASLNTLELFDNWL-TVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRL 176
Query: 339 NFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397
+ + L + ++L N+ +P + L L ++ N
Sbjct: 177 DLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGLEELEMSGNHFPEIR 234
Query: 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFS 455
P S L SL+ L + N+ S +F+ L L LNL+ N L +P
Sbjct: 235 PGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLV 293
Query: 456 DNSFMGNSFLC 466
+ N + C
Sbjct: 294 ELHLHHNPWNC 304
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 93.7 bits (233), Expect = 1e-20
Identities = 44/206 (21%), Positives = 72/206 (34%), Gaps = 13/206 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
N++ + L L L++ +N +T +L + L +N + +
Sbjct: 105 QLGRNSIR-QIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNF----DGPRHSNLERL 116
+ S L LG + I L NL+YL L N + LE L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDMPNLTPLVGLEEL 223
Query: 117 YLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSST 175
+ N+F I F S L L + + S + L +L L+L+ N L+S
Sbjct: 224 EMSGNHFP-EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLP 282
Query: 176 SELSFLSSLRNCRNLKVIDLTGNQLH 201
+L R L + L N +
Sbjct: 283 HDL-----FTPLRYLVELHLHHNPWN 303
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452 | Back alignment and structure |
|---|
Score = 91.3 bits (227), Expect = 6e-20
Identities = 53/256 (20%), Positives = 100/256 (39%), Gaps = 13/256 (5%)
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN 247
+ T L + P + ++ Y+ + + +L +L + LG N
Sbjct: 54 NQFSKVVCTRRGLSEV-PQ---GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRN 109
Query: 248 KLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+ + L L L L+ N L + L +L EL +N + SIP+
Sbjct: 110 SIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPS--YA 166
Query: 308 LSPLRNL----LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGID 363
+ + +L L L Y+ F L ++ N ++ +P ++ L + ++
Sbjct: 167 FNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIK-DMP-NLTPLVGLEELE 224
Query: 364 LSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423
+S N+ + P GLS+L + +++ + L SL L+L++N+ S
Sbjct: 225 MSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHD 284
Query: 424 SFEKLLYLEYLNLSFN 439
F L YL L+L N
Sbjct: 285 LFTPLRYLVELHLHHN 300
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 94.3 bits (235), Expect = 2e-21
Identities = 53/304 (17%), Positives = 100/304 (32%), Gaps = 23/304 (7%)
Query: 160 NLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
+L+ + S L + E+S + ++DL N + + L L +
Sbjct: 34 HLRVVQCSDLGLKAVPKEIS--------PDTTLLDLQNNDISELRKDDFKGL-QHLYALV 84
Query: 220 MPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
+ + S + L L + + N L IP +L L L ++ N++
Sbjct: 85 LVNNKISKIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRKVPKG 141
Query: 280 SLCNLGRLVELQFYDNKL-FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
L + ++ N L L L + LT + +L ++
Sbjct: 142 VFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLNEL--- 198
Query: 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
+ N + D+ + + L N + + L L L NKL +P
Sbjct: 199 HLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVP 257
Query: 399 ESLGDLRSLEFLDLSNNSFSGFIPRSF------EKLLYLEYLNLSFNRLKGEIPSGESFA 452
L DL+ L+ + L N+ + F K Y ++L N + +F
Sbjct: 258 AGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFR 317
Query: 453 NFSD 456
+D
Sbjct: 318 CVTD 321
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 93.9 bits (234), Expect = 3e-21
Identities = 61/294 (20%), Positives = 114/294 (38%), Gaps = 34/294 (11%)
Query: 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80
P LD+ NN ++ + Q L A+ L +N+++ + + L + L + N+
Sbjct: 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNH 113
Query: 81 LIGEIPHEIGNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNF-SGTIPSFI 131
L+ EIP + +L L + +N F G N+ + + N +
Sbjct: 114 LV-EIPPNL--PSSLVELRIHDNRIRKVPKGVFSG--LRNMNCIEMGGNPLENSGFEPGA 168
Query: 132 FNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLK 191
F+ KL+ L I + IP + L L L N + + E L L
Sbjct: 169 FDGLKLNYLRISEAKLT-GIPKDL--PETLNELHLDHNKIQAIELE-----DLLRYSKLY 220
Query: 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG 251
+ L NQ+ I S+ L +L +++ + S R+P + +L L + L N +T
Sbjct: 221 RLGLGHNQIRMIENGSLSFL-PTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNIT- 277
Query: 252 SIPIS-------LGKLQKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDNK 296
+ ++ K G+ L+ N + P + + + +QF + K
Sbjct: 278 KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 85.5 bits (212), Expect = 2e-18
Identities = 50/281 (17%), Positives = 92/281 (32%), Gaps = 43/281 (15%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVT---GPVPRNLWQCQELIAISLSHNQLT 58
NN ++ + + L +LQ L I+ NH+ +P +L EL + N++
Sbjct: 84 VLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLVEIPPNLPSSL---VEL---RIHDNRIR 136
Query: 59 GLIPRDIGNLTSARALLLGNNNL-IGEIPHEIGNLHNLEYLVLENNNFDG-PRH--SNLE 114
+ L + + +G N L + L YL + G P+ L
Sbjct: 137 KVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN 196
Query: 115 RLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
L+L+ N I SKL LG+ N +++ L L+ L L N L+
Sbjct: 197 ELHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS- 254
Query: 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI 233
+ L + + L+V+ L N + + + + +
Sbjct: 255 -----RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGV------------------ 291
Query: 234 GNLINLITMSLGINKLTGSI--PISLGKLQKLQGLYLYKNK 272
+SL N + P + + + K
Sbjct: 292 -KRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 7e-07
Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 10/111 (9%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ +N + ++ + +L L + +N + +L L + L +N+L+
Sbjct: 198 LHLDHNKIQ-AIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIP-------HEIGNLHNLEYLVLENNN 104
+P + +L + + L NN I ++ + L NN
Sbjct: 256 VPAGLPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 87.0 bits (216), Expect = 3e-19
Identities = 41/210 (19%), Positives = 73/210 (34%), Gaps = 19/210 (9%)
Query: 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80
Q + ++ N ++ + C+ L + L N L + L L L +N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 81 LIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNFSGTIPSFI 131
+ + L L L L+ F G + L+ LYL+ N +P
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRG--LAALQYLYLQDNALQ-ALPDDT 148
Query: 132 F-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNL 190
F + L+ L + N S L +L L L N + + R+ L
Sbjct: 149 FRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPH-----AFRDLGRL 203
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
+ L N L + ++ L +L+Y+ +
Sbjct: 204 MTLYLFANNLSALPTEALAPL-RALQYLRL 232
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 80.8 bits (200), Expect = 4e-17
Identities = 53/251 (21%), Positives = 81/251 (32%), Gaps = 34/251 (13%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
C + G +P I + L N+++ S + L L+L+ N L
Sbjct: 17 SCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 280 SLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
+ L L +L DN S+ L L L L L + P F L
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGL------ 128
Query: 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
L+ + L N L L NL L N++
Sbjct: 129 ---------------AALQY---LYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPE 170
Query: 399 ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNS 458
+ L SL+ L L N + P +F L L L L N L +P+ + A
Sbjct: 171 RAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLS-ALPTE-ALAPLRALQ 228
Query: 459 FM---GNSFLC 466
++ N ++C
Sbjct: 229 YLRLNDNPWVC 239
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 61.5 bits (150), Expect = 1e-10
Identities = 37/156 (23%), Positives = 54/156 (34%), Gaps = 14/156 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D ++N S+ L RL L ++ + P L + L N L L
Sbjct: 86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSN 112
+L + L L N I +P LH+L+ L+L N F
Sbjct: 146 DDTFRDLGNLTHLFLHGNR-ISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL--GR 202
Query: 113 LERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSF 147
L LYL NN S +P+ L L + N +
Sbjct: 203 LMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 7e-09
Identities = 29/103 (28%), Positives = 45/103 (43%), Gaps = 3/103 (2%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRD 64
+N L +LPDD + L L L ++ N ++ R L + L N++ + P
Sbjct: 138 DNALQ-ALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHA 196
Query: 65 IGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFD 106
+L L L NNL +P E L L+YL L +N +
Sbjct: 197 FRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 86.7 bits (215), Expect = 8e-19
Identities = 56/302 (18%), Positives = 108/302 (35%), Gaps = 47/302 (15%)
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
+IPS + ++ LDLS N +T ++ S L+ C NL+ + LT N ++ I S
Sbjct: 45 SIPSGL--TEAVKSLDLSNNRITYISN-----SDLQRCVNLQALVLTSNGINTIEEDSFS 97
Query: 210 NLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYL 268
+L +L + L N L+ ++ S L L L L
Sbjct: 98 SLG-------------------------SLEHLDLSYNYLS-NLSSSWFKPLSSLTFLNL 131
Query: 269 YKNKLEGSIPDS--LCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVI 325
N + ++ ++ +L +L L+ + F I L+ L L + ++ L
Sbjct: 132 LGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYE 190
Query: 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI-------- 377
P + S++++ L + + V ++L +L + +
Sbjct: 191 PKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSL 250
Query: 378 GGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437
+ L + + L + L L+ S N F++L L+ + L
Sbjct: 251 IKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLH 309
Query: 438 FN 439
N
Sbjct: 310 TN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 85.9 bits (213), Expect = 2e-18
Identities = 52/310 (16%), Positives = 114/310 (36%), Gaps = 51/310 (16%)
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
++ L L N + I + L L + +N + + ++L +L+ LDLS+N
Sbjct: 52 EAVKSLDLSNNRIT-YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYN 110
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRI 229
YL++ +S + +L ++L GN + +S+ + T L+ + + +I
Sbjct: 111 YLSNLSSSW-----FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKI 165
Query: 230 PEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288
+ L L + + + L P SL +Q + L L+ + + + +
Sbjct: 166 QRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIF--VDVTS 222
Query: 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348
++ + LR+ L + + + SL F
Sbjct: 223 SVECLE----------------LRDTDLDTFHFSELSTGETNSLIKKFTFRN-------- 258
Query: 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES-LGDLRSL 407
+ ++ +L + ++ +S L + N+L+ S+P+ L SL
Sbjct: 259 -------------VKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSL 303
Query: 408 EFLDLSNNSF 417
+ + L N +
Sbjct: 304 QKIWLHTNPW 313
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 83.6 bits (207), Expect = 8e-18
Identities = 65/302 (21%), Positives = 121/302 (40%), Gaps = 45/302 (14%)
Query: 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80
+++LD++NN +T +L +C L A+ L+ N + + +L S L L N
Sbjct: 52 EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNY 111
Query: 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSI 139
L L ++ F S+L L L N + + +F+ +KL I
Sbjct: 112 LS----------------NLSSSWFKP--LSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153
Query: 140 LGIRTNSFSGTIPS-TIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
L + I A L L+ L++ + L S + SL++ +N+ + L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPK-----SLKSIQNVSHLILHMK 208
Query: 199 QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLG 258
Q +L + +S+E + L + + ++L+ SL
Sbjct: 209 QHILLLEIFVDVT-SSVECLE----------------LRDTDLDTFHFSELSTGETNSLI 251
Query: 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLH 317
K + + + L + L + L+EL+F N+L S+P I +L+ L+ + LH
Sbjct: 252 KKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLH 309
Query: 318 SN 319
+N
Sbjct: 310 TN 311
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 73.6 bits (181), Expect = 2e-14
Identities = 41/220 (18%), Positives = 72/220 (32%), Gaps = 9/220 (4%)
Query: 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVL 321
++ L L N++ L L L N + +I L L +L L N L
Sbjct: 54 VKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGI-NTIEEDSFSSLGSLEHLDLSYNYL 112
Query: 322 TYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRNNLSDSIPT-VIGG 379
+ + S F L + N N + +L + + + + I G
Sbjct: 113 SNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAG 172
Query: 380 LSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L+ L + + LQ P+SL ++++ L L + + +E L L
Sbjct: 173 LTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232
Query: 440 RLKG----EIPSGESFANFSDNSFMGNSFLCGSPNLQVPP 475
L E+ +GE + N + QV
Sbjct: 233 DLDTFHFSELSTGE-TNSLIKKFTFRNVKITDESLFQVMK 271
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353 | Back alignment and structure |
|---|
Score = 61.3 bits (149), Expect = 2e-10
Identities = 30/195 (15%), Positives = 58/195 (29%), Gaps = 13/195 (6%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ N + L L+ L+I+ + + P++L Q + + L Q L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-SNLERLYLE 119
+ + +S L L + +L + L + + +
Sbjct: 214 LEIFVDVTSSVECLELRDT-----------DLDTFHFSELSTGETNSLIKKFTFRNVKIT 262
Query: 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179
+ + + S L L N L +LQ + L N S +
Sbjct: 263 DESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 321
Query: 180 FLSSLRNCRNLKVID 194
+LS N + K
Sbjct: 322 YLSRWLNKNSQKEQG 336
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 85.5 bits (211), Expect = 7e-18
Identities = 57/343 (16%), Positives = 108/343 (31%), Gaps = 54/343 (15%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82
+ + + P E I +L +T + L S ++ N++ I
Sbjct: 1 MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-I 55
Query: 83 GEIPHEIGNLHNLEYLVLENNN----FDGPRHSNLERLYLERNNFSGTIPSFIFNASKLS 138
+ I L N+ L L N NL L+L+ N + S + + KL
Sbjct: 56 KSVQ-GIQYLPNVTKLFLNGNKLTDIKPLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLK 112
Query: 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
L + N S I + + +L L+ L L N +T ++ L L + L N
Sbjct: 113 SLSLEHNGIS-DI-NGLVHLPQLESLYLGNNKITD-------ITVLSRLTKLDTLSLEDN 163
Query: 199 QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLG 258
Q+ I + L L + L N ++ + +L
Sbjct: 164 QISDI---------------------------VPLAGLTKLQNLYLSKNHIS-DLR-ALA 194
Query: 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFG----SIPACIGKLSPLRNL 314
L+ L L L+ + + NL ++ D L S K + +L
Sbjct: 195 GLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHL 254
Query: 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLK 357
+N ++++ + F+ + ++
Sbjct: 255 PEFTNEVSFIFYQPVTIGKAKARFHGRVTQPLKEVYTVSYDVD 297
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 85.2 bits (210), Expect = 1e-17
Identities = 45/241 (18%), Positives = 89/241 (36%), Gaps = 24/241 (9%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
++ VT V + + I +++ + + + I L + L L N
Sbjct: 20 FAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGN 75
Query: 80 NLIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSFIFNAS 135
+ +I + NL NL +L L+ N + + L+ L LE N S I + + +
Sbjct: 76 K-LTDIK-PLTNLKNLGWLFLDENKIKDLSSLKDLKKLKSLSLEHNGIS-DI-NGLVHLP 131
Query: 136 KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDL 195
+L L + N T + ++ L L L L N ++ + L L+ + L
Sbjct: 132 QLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLYL 182
Query: 196 TGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPI 255
+ N + + ++ L +L+ + + + NL+ T+ L I
Sbjct: 183 SKNHISDL--RALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII 239
Query: 256 S 256
S
Sbjct: 240 S 240
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 77.5 bits (190), Expect = 3e-15
Identities = 55/339 (16%), Positives = 102/339 (30%), Gaps = 70/339 (20%)
Query: 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212
+L +T + ++ I + + +
Sbjct: 15 FPDDAFAETIKDNLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSV--------- 58
Query: 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
+ I L N+ + L NKLT I L L+ L L+L +NK
Sbjct: 59 ------------------QGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENK 98
Query: 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
++ + SL +L +L L N + I + L L +L L +N +T +
Sbjct: 99 IK-DL-SSLKDLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKITDITV------ 148
Query: 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392
+ L + + L N +SD +P + GL+ L L+ N
Sbjct: 149 --------------------LSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186
Query: 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452
+ S +L L++L+ L+L + L+ + + L +
Sbjct: 187 I--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGD 244
Query: 453 NFSDNSFMGNSFLCGSPNLQVPPRKDIKTSPHRKSRKNT 491
N + I + R + T
Sbjct: 245 YEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKARFHGRVT 283
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 74.4 bits (182), Expect = 3e-14
Identities = 52/275 (18%), Positives = 100/275 (36%), Gaps = 17/275 (6%)
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
+ ++ + + +L + + L S++ I +
Sbjct: 4 TITVSTPIKQIFPDDAFAETIKDNLKKKSVTDA--VTQNEL-NSIDQIIANNSDIK-SV- 58
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
+ I L N+ + L NKLT I L L+ L L+L +NK++ + SL +L +L L
Sbjct: 59 QGIQYLPNVTKLFLNGNKLT-DIK-PLTNLKNLGWLFLDENKIK-DL-SSLKDLKKLKSL 114
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
N + I + L L +L L +N +T + + L + + N ++ +P
Sbjct: 115 SLEHNGI-SDING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP 170
Query: 351 LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFL 410
L L + + LS+N++SD + GL NL L + +L +
Sbjct: 171 LA--GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPNTV 226
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445
++ S S + + E+
Sbjct: 227 KNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 261
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 70.5 bits (172), Expect = 5e-13
Identities = 48/195 (24%), Positives = 79/195 (40%), Gaps = 35/195 (17%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
Q+LP + L +N N +T + L + L + L N++ L + +L ++L L
Sbjct: 62 QYLPNVTKLFLNGNKLT--DIKPLTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLE 117
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKL 137
+N + +I L +L LE LYL N T + + +KL
Sbjct: 118 HNGIS-----DINGLVHL---------------PQLESLYLGNNKI--TDITVLSRLTKL 155
Query: 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTG 197
L + N S I +A L LQ L LS N+++ L +L +NL V++L
Sbjct: 156 DTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD-------LRALAGLKNLDVLELFS 206
Query: 198 NQLHGILPSSMGNLS 212
+ + NL
Sbjct: 207 QECLNKPINHQSNLV 221
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605 | Back alignment and structure |
|---|
Score = 44.7 bits (105), Expect = 6e-05
Identities = 24/146 (16%), Positives = 51/146 (34%), Gaps = 7/146 (4%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
L +L L + +N ++ VP L +L + LS N ++ L + L + L L
Sbjct: 150 SRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELF 205
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERN---NFSGTIPSFIFNA 134
+ + + + NL + + + P + + Y + N + F
Sbjct: 206 SQECLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEVSFIF 265
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRN 160
+ +G F G + + +
Sbjct: 266 YQPVTIGKAKARFHGRVTQPLKEVYT 291
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 78.2 bits (193), Expect = 4e-16
Identities = 49/276 (17%), Positives = 95/276 (34%), Gaps = 28/276 (10%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
L + ++VT V + +S +T + + L + L L +N
Sbjct: 18 LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTIEG--VQYLNNLIGLELKDN 73
Query: 80 NLIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSFIFNAS 135
I ++ + NL + L L N N +++ L L + P + S
Sbjct: 74 Q-ITDLA-PLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLS 129
Query: 136 KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDL 195
L +L + N + P +A L NLQ+L + ++ L+ L N L +
Sbjct: 130 NLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSD-------LTPLANLSKLTTLKA 180
Query: 196 TGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPI 255
N++ I S + +L +L +++ + S + N NL ++L +T
Sbjct: 181 DDNKISDI--SPLASL-PNLIEVHLKNNQISD--VSPLANTSNLFIVTLTNQTITNQPVF 235
Query: 256 SLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291
L + P ++ + G
Sbjct: 236 YNNNLVVPNVVKGPSGAP--IAPATISDNGTYASPN 269
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 77.4 bits (191), Expect = 7e-16
Identities = 51/289 (17%), Positives = 94/289 (32%), Gaps = 48/289 (16%)
Query: 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212
L N + + +T + + + + G + I
Sbjct: 13 FPDPALANAIKIAAGKSNVTD-------TVTQADLDGITTLSAFGTGVTTI--------- 56
Query: 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
E + L NLI + L N++T + L L K+ L L N
Sbjct: 57 ------------------EGVQYLNNLIGLELKDNQIT-DLA-PLKNLTKITELELSGNP 96
Query: 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
L ++ L + L ++ P + LS L+ L L N +T + P L
Sbjct: 97 L--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP--LAGL 150
Query: 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392
++ + + ++ PL NL + + N +SD P + L NL L N+
Sbjct: 151 TNLQYLSIGNAQVSDLTPL--ANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQ 206
Query: 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
+ S L + +L + L+N + + L+ +
Sbjct: 207 I--SDVSPLANTSNLFIVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAP 253
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 51/202 (25%), Positives = 81/202 (40%), Gaps = 21/202 (10%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
Q+L L L++ +N +T P L ++ + LS N L + I L S + L L
Sbjct: 60 QYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLT 115
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNNFDG----PRHSNLERLYLERNNFSGTIPSFIFN 133
+ + P + L NL+ L L+ N +NL+ L + S + + N
Sbjct: 116 STQITDVTP--LAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDL--TPLAN 171
Query: 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVI 193
SKL+ L N S S +A+L NL + L N ++ +S L N NL ++
Sbjct: 172 LSKLTTLKADDNKISDI--SPLASLPNLIEVHLKNNQISD-------VSPLANTSNLFIV 222
Query: 194 DLTGNQLHGILPSSMGNLSTSL 215
LT + NL
Sbjct: 223 TLTNQTITNQPVFYNNNLVVPN 244
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308 | Back alignment and structure |
|---|
Score = 69.7 bits (171), Expect = 3e-13
Identities = 49/256 (19%), Positives = 89/256 (34%), Gaps = 26/256 (10%)
Query: 46 ELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF 105
I I+ + +T + +L L + I + L+NL L L++N
Sbjct: 20 NAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTG-VTTIE-GVQYLNNLIGLELKDNQI 75
Query: 106 DGPRH----SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNL 161
+ + L L N S I + L + + + P +A L NL
Sbjct: 76 TDLAPLKNLTKITELELSGNPL--KNVSAIAGLQSIKTLDLTSTQITDVTP--LAGLSNL 131
Query: 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMP 221
Q L L N +T+ +S L NL+ + + Q+ + + + NL + L +
Sbjct: 132 QVLYLDLNQITN-------ISPLAGLTNLQYLSIGNAQVSDL--TPLANL-SKLTTLKAD 181
Query: 222 YCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSL 281
+ S + +L NLI + L N+++ P L L + L +
Sbjct: 182 DNKISD--ISPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYN 237
Query: 282 CNLGRLVELQFYDNKL 297
NL ++
Sbjct: 238 NNLVVPNVVKGPSGAP 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 76.4 bits (188), Expect = 2e-15
Identities = 40/251 (15%), Positives = 82/251 (32%), Gaps = 11/251 (4%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP- 278
C+ S IP ++ N I + + KL + L+ + + +N + I
Sbjct: 15 LCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEA 72
Query: 279 DSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337
D NL +L E++ I L L+ LL+ + + ++ + ++
Sbjct: 73 DVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVL 132
Query: 338 FNFSSNSLNGSLPLDI--GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395
+ N ++ + G V + L++N + + + G N L+
Sbjct: 133 LDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE 192
Query: 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
+ LD+S E L L + + ++P+ E
Sbjct: 193 LPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK---KLPTLEKLVALM 249
Query: 456 DNSFMGNSFLC 466
+ S S C
Sbjct: 250 EASLTYPSHCC 260
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 73.3 bits (180), Expect = 2e-14
Identities = 44/225 (19%), Positives = 77/225 (34%), Gaps = 32/225 (14%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQ-CQELIAISLSH-NQLTG 59
F L + L+ ++I+ N V + +++ +L I + N L
Sbjct: 36 RFVLTKLR-VIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLY 94
Query: 60 LIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN---------FDGPR 109
+ P NL + + LL+ N I +P + L +++N F G
Sbjct: 95 INPEAFQNLPNLQYLLISNTG-IKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVG-L 152
Query: 110 HSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI-ANLRNLQWLDLSF 168
L+L +N I + FN ++L L + N+ +P+ + LD+S
Sbjct: 153 SFESVILWLNKNGIQ-EIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISR 211
Query: 169 NYLTS---------------STSELSFLSSLRNCRNLKVIDLTGN 198
+ S ST L L +L L LT
Sbjct: 212 TRIHSLPSYGLENLKKLRARSTYNLKKLPTLEKLVALMEASLTYP 256
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 67.2 bits (164), Expect = 3e-12
Identities = 43/259 (16%), Positives = 83/259 (32%), Gaps = 31/259 (11%)
Query: 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIG 83
+ + VT +P +L + I + +L + + + N+++
Sbjct: 12 RVFLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68
Query: 84 EIPHEI-GNLHNLEYLVLENNN---------FDGPRHSNLERLYLERNNFSGTIPSFIF- 132
I ++ NL L + +E N F NL+ L + +P
Sbjct: 69 VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQN--LPNLQYLLISNTGIK-HLPDVHKI 125
Query: 133 NASKLSILGIRTNSFSGTIPS-TIANLR-NLQWLDLSFNYLTSSTSELSFLSSLRNCRNL 190
++ + +L I+ N TI + L L L+ N + + S+ +
Sbjct: 126 HSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHN-----SAFNGTQLD 180
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKL 249
++ N L + + + + R +P NL L S K
Sbjct: 181 ELNLSDNNNLEELPNDVFHGA-SGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK- 237
Query: 250 TGSIPISLGKLQKLQGLYL 268
+P +L KL L L
Sbjct: 238 --KLP-TLEKLVALMEASL 253
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 1e-10
Identities = 46/230 (20%), Positives = 80/230 (34%), Gaps = 23/230 (10%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHN-QLTGLIPR 63
N L + + Q+LP LQ L I+N + + + + + + N + +
Sbjct: 89 ANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERN 147
Query: 64 DIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN---------FDGPRHSNLE 114
L+ +L N N I EI + N L+ L L +NN F G S
Sbjct: 148 SFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGA--SGPV 205
Query: 115 RLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY--- 170
L + R ++PS+ N KL +P+ + L L L++
Sbjct: 206 ILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALMEASLTYPSHCC 260
Query: 171 -LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
+ ++S L + N L+ Q G S + +S +
Sbjct: 261 AFANWRRQISELHPICNKSILRQEVDYMTQARGQRSSLAEDNESSYSRGF 310
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 73.9 bits (182), Expect = 8e-15
Identities = 47/253 (18%), Positives = 87/253 (34%), Gaps = 62/253 (24%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN------ 104
LS N L L + + L L I I +L +L L+L N
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCE-IQTIEDGAYQSLSHLSTLILTGNPIQSLAL 93
Query: 105 --FDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ 162
F G S+L++L N + ++ +F +L+ L+
Sbjct: 94 GAFSGL--SSLQKLVAVETNLA-SLENFPI-----------------------GHLKTLK 127
Query: 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPY 222
L+++ N + S F N NL+ +DL+ N++ I + + L + + +
Sbjct: 128 ELNVAHNLIQSFKLPEYF----SNLTNLEHLDLSSNKIQSIYCTDLRVL-HQMPLLNL-- 180
Query: 223 CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC 282
++ L +N + I K +L+ L L N+L+
Sbjct: 181 ------------------SLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFD 221
Query: 283 NLGRLVELQFYDN 295
L L ++ + N
Sbjct: 222 RLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.8 bits (174), Expect = 8e-14
Identities = 46/208 (22%), Positives = 75/208 (36%), Gaps = 20/208 (9%)
Query: 244 LGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFYDNKLFGSIP 302
L N L S +LQ L L + +++ +I D +L L L N + S+
Sbjct: 35 LSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPI-QSLA 92
Query: 303 ACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD-----IGNL 356
LS L+ L+ L + L+ + N + N + S L + NL
Sbjct: 93 LGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNL 151
Query: 357 KVVVGIDLSRNNLSDSIPT-VIGGLSNLAFF----SLAYNKLQGSIPESLGDLRSLEFLD 411
+ +DLS N + SI + L + L+ N + I L+ L
Sbjct: 152 EH---LDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELA 206
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L N F++L L+ + L N
Sbjct: 207 LDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 70.4 bits (173), Expect = 1e-13
Identities = 41/192 (21%), Positives = 63/192 (32%), Gaps = 13/192 (6%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + + ++ D Q L L L + N + L + L L
Sbjct: 58 DLSRCEIQ-TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLE 116
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRH-- 110
IG+L + + L + +N + E NL NLE+L L +N
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMP 176
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
L L N + I F +L L + TN L +LQ + L N
Sbjct: 177 LLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNP 235
Query: 171 LTSSTSELSFLS 182
S + +LS
Sbjct: 236 WDCSCPRIDYLS 247
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 68.8 bits (169), Expect = 4e-13
Identities = 47/241 (19%), Positives = 85/241 (35%), Gaps = 42/241 (17%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
+ + L L N + S+ F + LQ LDLS
Sbjct: 28 FSTKNLDLSFNPLR-HLGSYSF-----------------------FSFPELQVLDLSRCE 63
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
+ + + ++ ++ +L + LTGN + + + L +SL+ + + +
Sbjct: 64 IQ-TIEDGAY----QSLSHLSTLILTGNPIQSLALGAFSGL-SSLQKLVAVETNLA-SLE 116
Query: 231 EEI-GNLINLITMSLGINKLTGSIPIS--LGKLQKLQGLYLYKNKLEGSIP----DSLCN 283
G+L L +++ N + S + L L+ L L NK++ SI L
Sbjct: 117 NFPIGHLKTLKELNVAHNLIQ-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQ 174
Query: 284 LGRL-VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342
+ L + L N + I K L+ L L +N L V F L + +
Sbjct: 175 MPLLNLSLDLSLNPM-NFIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 233
Query: 343 N 343
N
Sbjct: 234 N 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 66.1 bits (162), Expect = 3e-12
Identities = 44/215 (20%), Positives = 73/215 (33%), Gaps = 32/215 (14%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVT---GPVPRNLWQCQELIAISLSHNQLT 58
D + N L L P LQ LD++ + ++L L L+ N +
Sbjct: 34 DLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTL---ILTGNPIQ 89
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN---------FDGP 108
L L+S + L+ N + + + G+L L+ L + +N F
Sbjct: 90 SLALGAFSGLSSLQKLVAVETN-LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148
Query: 109 RHSNLERLYLERNNFSGTIPSFIF-NASKLSILGIR----TNSFSGTIPSTIANLRNLQW 163
+NLE L L N +I ++ +L + N + I L+
Sbjct: 149 --TNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKE 204
Query: 164 LDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
L L N L S + +L+ I L N
Sbjct: 205 LALDTNQLKSVPDGI-----FDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 65.8 bits (161), Expect = 3e-12
Identities = 58/270 (21%), Positives = 93/270 (34%), Gaps = 62/270 (22%)
Query: 151 IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN 210
IP + + + LDLSFN L S S + L+V+DL+ ++
Sbjct: 22 IPDNLPF--STKNLDLSFNPLRHLGS-----YSFFSFPELQVLDLSRCEIQ--------- 65
Query: 211 LSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYL 268
I + +L +L T+ L N + S+ + L LQ L
Sbjct: 66 -----------------TIEDGAYQSLSHLSTLILTGNPIQ-SLALGAFSGLSSLQKLVA 107
Query: 269 YKNKLEGSIPDSL-CNLGRLVELQFYDNKLFGSIPA--CIGKLSPLRNLLLHSNVLTYVI 325
+ L S+ + +L L EL N + S L+ L +L L SN + +
Sbjct: 108 VETNLA-SLENFPIGHLKTLKELNVAHNLI-QSFKLPEYFSNLTNLEHLDLSSNKIQSIY 165
Query: 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAF 385
+ L +PL +L DLS N ++ I L
Sbjct: 166 CTDLRVLH--------------QMPLLNLSL------DLSLNPMN-FIQPGAFKEIRLKE 204
Query: 386 FSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
+L N+L+ L SL+ + L N
Sbjct: 205 LALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276 | Back alignment and structure |
|---|
Score = 61.9 bits (151), Expect = 7e-11
Identities = 37/161 (22%), Positives = 66/161 (40%), Gaps = 14/161 (8%)
Query: 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI 353
F IP + +NL L N L ++ +F S ++ V + S + ++
Sbjct: 15 MELNFYKIPDNL--PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-TIEDGA 71
Query: 354 ----GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL-GDLRSLE 408
+L + L+ N + GLS+L L S+ G L++L+
Sbjct: 72 YQSLSHLST---LILTGNPIQSLALGAFSGLSSLQKLVAVETNLA-SLENFPIGHLKTLK 127
Query: 409 FLDLSNNSFSGFI-PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L++++N F P F L LE+L+LS N+++ I
Sbjct: 128 ELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCT 167
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 71.5 bits (176), Expect = 1e-14
Identities = 31/179 (17%), Positives = 70/179 (39%), Gaps = 18/179 (10%)
Query: 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN 104
+ + L + + + +LT + N + ++ I HN++ L + N +
Sbjct: 23 KAYLNGLLGQSSTANITEAQMNSLTY----ITLANINVTDLTG-IEYAHNIKDLTINNIH 77
Query: 105 FDGPRH----SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN 160
SNLERL + + + + + L++L I ++ +I + I L
Sbjct: 78 ATNYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPK 137
Query: 161 LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
+ +DLS+N + + L+ LK +++ + +H + + L +Y
Sbjct: 138 VNSIDLSYNGAITD------IMPLKTLPELKSLNIQFDGVHDY--RGIEDF-PKLNQLY 187
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 69.2 bits (170), Expect = 8e-14
Identities = 23/185 (12%), Positives = 61/185 (32%), Gaps = 30/185 (16%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78
+ L + + N +VT + + +++++ T P I L++ L +
Sbjct: 42 QMNSLTYITLANINVTDL--TGIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRIMG 97
Query: 79 NNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLS 138
++ + + L +L L + ++ D + + L K++
Sbjct: 98 KDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL------------------PKVN 139
Query: 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
+ + N I + L L+ L++ F+ + + + L +
Sbjct: 140 SIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHD-------YRGIEDFPKLNQLYAFSQ 191
Query: 199 QLHGI 203
+ G
Sbjct: 192 TIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 66.5 bits (163), Expect = 7e-13
Identities = 30/210 (14%), Positives = 62/210 (29%), Gaps = 34/210 (16%)
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
+ LG + I+ ++ L + L + + + + +L +
Sbjct: 21 TFKAYLNGLLGQSSTA---NITEAQMNSLTYITLANINVT-DL-TGIEYAHNIKDLTINN 75
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
+P+ L +L + + ++
Sbjct: 76 IH--------ATNYNPISGLS---------------NLERL---RIMGKDVTSDKIPNLS 109
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L + +D+S + DSI T I L + L+YN I L L L+ L++
Sbjct: 110 GLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQF 168
Query: 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGE 444
+ + E L L + G+
Sbjct: 169 DGVHDYRG--IEDFPKLNQLYAFSQTIGGK 196
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 63.4 bits (155), Expect = 7e-12
Identities = 27/175 (15%), Positives = 55/175 (31%), Gaps = 35/175 (20%)
Query: 148 SGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207
S T T A + +L ++ L+ +T L+ + N+K + +
Sbjct: 33 SSTANITEAQMNSLTYITLANINVTD-------LTGIEYAHNIKDLTINNIHATNY---- 81
Query: 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267
I L NL + + +T +L L L L
Sbjct: 82 -----------------------NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLD 118
Query: 268 LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT 322
+ + + SI + L ++ + N I + L L++L + + +
Sbjct: 119 ISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVH 172
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 4e-07
Identities = 15/107 (14%), Positives = 36/107 (33%), Gaps = 4/107 (3%)
Query: 342 SNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL 401
+ + + + + I L+ N++D I N+ ++ + +
Sbjct: 29 LLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHA--TNYNPI 84
Query: 402 GDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L +LE L + + + L L L++S + I +
Sbjct: 85 SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTK 131
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 73.2 bits (180), Expect = 1e-14
Identities = 49/229 (21%), Positives = 79/229 (34%), Gaps = 36/229 (15%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248
+ ++ L + P +L +++ + L ++L +
Sbjct: 11 SHLEVNCDKRNLTAL-PP---DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66
Query: 249 LTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI-GK 307
LT + + G L L L L N+L+ S+P L L L N+L S+P
Sbjct: 67 LT-KLQVD-GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL-TSLPLGALRG 122
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367
L L+ L L N L + P L+ + L+ N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTP---------------------KLEK---LSLANN 158
Query: 368 NLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
NL+ +P ++ GL NL L N L +IP+ L F L N
Sbjct: 159 NLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 72.1 bits (177), Expect = 4e-14
Identities = 52/215 (24%), Positives = 79/215 (36%), Gaps = 33/215 (15%)
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
+ + + ++ LT ++P L + L+L +N L +L RL +L
Sbjct: 8 KVASHLEVNCDKRNLT-ALPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
+L + G L L L L N L +P +L + V + S N L SLP
Sbjct: 65 AEL-TKLQV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT-SLP---- 116
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLS 413
+ GL L L N+L+ ++P L LE L L+
Sbjct: 117 -------------------LGALRGLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLA 156
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
NN+ + L L+ L L N L IP G
Sbjct: 157 NNNLTELPAGLLNGLENLDTLLLQENSLYT-IPKG 190
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 8e-13
Identities = 54/254 (21%), Positives = 72/254 (28%), Gaps = 75/254 (29%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN------F 105
LT +P D+ L L N L + L L L+
Sbjct: 17 CDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD 73
Query: 106 DGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165
L L L N ++P L L LD
Sbjct: 74 GTL--PVLGTLDLSHNQLQ-------------------------SLPLLGQTLPALTVLD 106
Query: 166 LSFNYLTSSTSELSFLSS--LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYC 223
+SFN LTS L LR L+ + L GN+L +L
Sbjct: 107 VSFNRLTS-------LPLGALRGLGELQELYLKGNEL------------KTL-------- 139
Query: 224 RRSGRIPEEI-GNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPDSL 281
P + L +SL N LT +P L L+ L L L +N L +IP
Sbjct: 140 ------PPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGF 191
Query: 282 CNLGRLVELQFYDN 295
L + N
Sbjct: 192 FGSHLLPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 64.7 bits (158), Expect = 1e-11
Identities = 42/186 (22%), Positives = 62/186 (33%), Gaps = 23/186 (12%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82
L ++ N + L L ++L +LT L L L L +N L
Sbjct: 33 TTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVDG--TLPVLGTLDLSHNQL- 89
Query: 83 GEIPHEIGNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
+P L L L + N G L+ LYL+ N T+P +
Sbjct: 90 QSLPLLGQTLPALTVLDVSFNRLTSLPLGALRGL--GELQELYLKGNELK-TLPPGLLTP 146
Query: 135 -SKLSILGIRTNSFSGTIPSTI-ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKV 192
KL L + N+ + +P+ + L NL L L N L + L
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYTIPKGFFGSHLLPF------ 199
Query: 193 IDLTGN 198
L GN
Sbjct: 200 AFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 56.3 bits (136), Expect = 6e-09
Identities = 38/151 (25%), Positives = 61/151 (40%), Gaps = 14/151 (9%)
Query: 302 PAC-IGKLSPLRNLLLHSNVLTYV---IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLK 357
P C + K++ + LT + +P L + S N L +
Sbjct: 2 PICEVSKVASHLEVNCDKRNLTALPPDLPKDTTIL------HLSENLLYTFSLATLMPYT 55
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417
+ ++L R L+ + V G L L L++N+LQ S+P L +L LD+S N
Sbjct: 56 RLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRL 112
Query: 418 SGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+ + L L+ L L N LK +P G
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELK-TLPPG 142
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 50.1 bits (120), Expect = 6e-07
Identities = 40/129 (31%), Positives = 56/129 (43%), Gaps = 15/129 (11%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D ++N L SLP + Q LP L LD++ N +T L EL + L N+L L
Sbjct: 83 DLSHNQLQ-SLPL-LGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLP 140
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSN 112
P + L L NNNL E+P + L NL+ L+L+ N+ F
Sbjct: 141 PGLLTPTPKLEKLSLANNNL-TELPAGLLNGLENLDTLLLQENSLYTIPKGFFG---SHL 196
Query: 113 LERLYLERN 121
L +L N
Sbjct: 197 LPFAFLHGN 205
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290 | Back alignment and structure |
|---|
Score = 46.3 bits (110), Expect = 1e-05
Identities = 33/105 (31%), Positives = 46/105 (43%), Gaps = 2/105 (1%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D + N LT SLP + L LQ L + N + P L +L +SL++N LT L
Sbjct: 106 DVSFNRLT-SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP 164
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFD 106
+ L + LLL N+L IP H L + L N +
Sbjct: 165 AGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGNPWL 208
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 71.2 bits (175), Expect = 4e-14
Identities = 43/186 (23%), Positives = 74/186 (39%), Gaps = 20/186 (10%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
L ++ VT V + + + ++ + L + T+ + L L
Sbjct: 16 PGLANAVKQNLGKQSVTDLVS--QKELSGVQNFNGDNSNIQSLAG--MQFFTNLKELHLS 71
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENN---NFDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
+N I ++ + +L LE L + N N +G + L RL+L+ N T + +
Sbjct: 72 HNQ-ISDLSP-LKDLTKLEELSVNRNRLKNLNGIPSACLSRLFLDNNELRDT--DSLIHL 127
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
L IL IR N +I + L L+ LDL N +T+ L + + ID
Sbjct: 128 KNLEILSIRNNKLK-SIVM-LGFLSKLEVLDLHGNEITN-------TGGLTRLKKVNWID 178
Query: 195 LTGNQL 200
LTG +
Sbjct: 179 LTGQKC 184
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263 | Back alignment and structure |
|---|
Score = 54.6 bits (132), Expect = 2e-08
Identities = 38/174 (21%), Positives = 69/174 (39%), Gaps = 19/174 (10%)
Query: 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212
L N +L +T L S + ++ + + + + + M
Sbjct: 13 FPDPGLANAVKQNLGKQSVTD-------LVSQKELSGVQNFNGDNSNIQSL--AGMQFF- 62
Query: 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
T+L+ +++ + + S + + +L L +S+ N+L ++ L L+L N+
Sbjct: 63 TNLKELHLSHNQIS-DL-SPLKDLTKLEELSVNRNRLKN---LNGIPSACLSRLFLDNNE 117
Query: 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP 326
L DSL +L L L +NKL +G LS L L LH N +T
Sbjct: 118 L--RDTDSLIHLKNLEILSIRNNKL--KSIVMLGFLSKLEVLDLHGNEITNTGG 167
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 70.5 bits (173), Expect = 1e-13
Identities = 44/242 (18%), Positives = 89/242 (36%), Gaps = 24/242 (9%)
Query: 19 HLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78
++ VT V +N + + I +++ + + I L + L L
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 79 NNLIGEIPHEIGNLHNLEYLVLENN---NFDGPRH-SNLERLYLERNNFSGTIPSFIFNA 134
N + +I + NL NL +L L+ N + + L+ L LE N + + + +
Sbjct: 78 NK-LTDIK-PLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGI--SDINGLVHL 133
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
+L L + N T + ++ L L L L N ++ + L L+ +
Sbjct: 134 PQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQISD-------IVPLAGLTKLQNLY 184
Query: 195 LTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254
L+ N + + ++ L +L+ + + + NL+ T+ L
Sbjct: 185 LSKNHISDL--RALAGL-KNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEI 241
Query: 255 IS 256
IS
Sbjct: 242 IS 243
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 68.2 bits (167), Expect = 6e-13
Identities = 48/199 (24%), Positives = 82/199 (41%), Gaps = 21/199 (10%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
L + + NN+ + + + + + L+ N+LT + P + NL + L L
Sbjct: 43 NELNSIDQIIANNSDIK--SVQGIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLD 98
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNNFDG----PRHSNLERLYLERNNFSGTIPSFIFN 133
N + ++ + +L L+ L LE+N LE LYL N T + +
Sbjct: 99 ENK-VKDLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKI--TDITVLSR 154
Query: 134 ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVI 193
+KL L + N S I +A L LQ L LS N+++ L +L +NL V+
Sbjct: 155 LTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISD-------LRALAGLKNLDVL 205
Query: 194 DLTGNQLHGILPSSMGNLS 212
+L + + NL
Sbjct: 206 ELFSQECLNKPINHQSNLV 224
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 67.0 bits (164), Expect = 2e-12
Identities = 49/262 (18%), Positives = 86/262 (32%), Gaps = 48/262 (18%)
Query: 40 NLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLV 99
+ E I +L +T + L S ++ N++ I + I L N+ L
Sbjct: 19 SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSD-IKSVQ-GIQYLPNVTKLF 74
Query: 100 LENNN----FDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI 155
L N NL L+L+ N S + + KL L + N + + +
Sbjct: 75 LNGNKLTDIKPLANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGI--SDINGL 130
Query: 156 ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSL 215
+L L+ L L N +T ++ L L + L NQ+ I
Sbjct: 131 VHLPQLESLYLGNNKITD-------ITVLSRLTKLDTLSLEDNQISDI------------ 171
Query: 216 EYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEG 275
+ L L + L N ++ + +L L+ L L L+ +
Sbjct: 172 ---------------VPLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELFSQECLN 214
Query: 276 SIPDSLCNLGRLVELQFYDNKL 297
+ NL ++ D L
Sbjct: 215 KPINHQSNLVVPNTVKNTDGSL 236
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291 | Back alignment and structure |
|---|
Score = 63.9 bits (156), Expect = 2e-11
Identities = 51/293 (17%), Positives = 97/293 (33%), Gaps = 46/293 (15%)
Query: 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212
+ +L +T + ++ I + + +
Sbjct: 18 FSDDAFAETIKDNLKKKSVTD-------AVTQNELNSIDQIIANNSDIKSV--------- 61
Query: 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
+ I L N+ + L NKLT I L L+ L L+L +NK
Sbjct: 62 ------------------QGIQYLPNVTKLFLNGNKLT-DIK-PLANLKNLGWLFLDENK 101
Query: 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332
++ + SL +L +L L N + I + L L +L L +N +T + + L
Sbjct: 102 VK-DL-SSLKDLKKLKSLSLEHNGI-SDING-LVHLPQLESLYLGNNKITDI--TVLSRL 155
Query: 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392
+ + N ++ +PL L + + LS+N++SD + GL NL L +
Sbjct: 156 TKLDTLSLEDNQISDIVPLA--GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQE 211
Query: 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445
+L + ++ S S + + E+
Sbjct: 212 CLNKPINHQSNLVVPNTVKNTDGSLVTPEIISDDGDYEKPNVKWHLPEFTNEV 264
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 69.9 bits (171), Expect = 2e-13
Identities = 44/264 (16%), Positives = 86/264 (32%), Gaps = 21/264 (7%)
Query: 231 EEIGNLINLITMSLGINKLTGSIPIS-LGKLQKLQGLYLYKNKLEGSIPDS---LCNLGR 286
E G +L + ++ + + K L+ L + ++ I + +
Sbjct: 37 ELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRILFGALRVLGISG 96
Query: 287 LVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS------LRDILVFNF 340
L EL + ++ G+ P + + + +L+ +++ +L+ + V +
Sbjct: 97 LQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSI 156
Query: 341 SSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP----TVIGGLSNLAFFSLAYNKLQ-- 394
+ + + +DLS N L +L ++
Sbjct: 157 AQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETP 216
Query: 395 -GSIPESLGDLRSLEFLDLSNNSFSGFIPR-SFEKLLYLEYLNLSFNRLK---GEIPSGE 449
G L+ LDLS+NS S + L LNLSF LK +P+
Sbjct: 217 SGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAKL 276
Query: 450 SFANFSDNSFMGNSFLCGSPNLQV 473
S + S N N P +
Sbjct: 277 SVLDLSYNRLDRNPSPDELPQVGN 300
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 67.6 bits (165), Expect = 1e-12
Identities = 41/225 (18%), Positives = 67/225 (29%), Gaps = 30/225 (13%)
Query: 1 MDFANNTLTGSLPDDMCQHL--PRLQALDINNNHVTGPVPRNLWQCQ--ELIAISLSHNQ 56
+ + + + L LQ L + N VTG P L + +L ++L +
Sbjct: 73 LTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVS 132
Query: 57 LTGLIPRD----IGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-- 110
+ L + + + ++ L L L +N G R
Sbjct: 133 WATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192
Query: 111 --------SNLERLYLERNNF---SGTIPSFIFNASKLSILGIRTNSFSGTIPSTI-ANL 158
L+ L L SG + +L L + NS +
Sbjct: 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWP 252
Query: 159 RNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGI 203
L L+LSF L L L V+DL+ N+L
Sbjct: 253 SQLNSLNLSFTGLKQVPKGLP--------AKLSVLDLSYNRLDRN 289
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 2e-11
Identities = 58/339 (17%), Positives = 94/339 (27%), Gaps = 52/339 (15%)
Query: 67 NLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFDGPRHSN--LERLYLERNNF 123
N + + N +G E+ G +LEYL+ + ++ L L+R
Sbjct: 16 NFSDPKPDWSSAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTV 75
Query: 124 SGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS 183
L +L + LQ L L +T + ++
Sbjct: 76 RAARIPSRILFGALRVL----------------GISGLQELTLENLEVTGTAPPPLLEAT 119
Query: 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMS 243
+ L + +++ L L L+ + + E++ L T+
Sbjct: 120 GPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLD 179
Query: 244 LGINKLTGSIPIS----LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFG 299
L N G + K LQ L L + G
Sbjct: 180 LSDNPELGERGLISALCPLKFPTLQVLALRNAGM---------------------ETPSG 218
Query: 300 SIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIG-NLK 357
A L+ L L N L + + N S L +P + L
Sbjct: 219 VCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLPAKLS 277
Query: 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396
V +DLS N L P L + SL N S
Sbjct: 278 V---LDLSYNRLD-RNP-SPDELPQVGNLSLKGNPFLDS 311
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 61.8 bits (150), Expect = 9e-11
Identities = 44/252 (17%), Positives = 77/252 (30%), Gaps = 26/252 (10%)
Query: 232 EIGNLINLITMSLGINKLTGSIPISLGKL---QKLQGLYLYKNKLEGSIPDSLCNLG--R 286
+I ++L +++ ++ I ++ LQ L L ++ G+ P L
Sbjct: 63 DIIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPD 122
Query: 287 LVELQFYDNKL---FGSIPACIGKLSP-LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342
L L + + L P L+ L + + + S
Sbjct: 123 LNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSD 182
Query: 343 NSLNGSLPL-------DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395
N G L L+V+ + S + L L++N L+
Sbjct: 183 NPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRD 242
Query: 396 SIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA-- 452
+ D L L+LS K L L+LS+NRL PS +
Sbjct: 243 AAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPAK---LSVLDLSYNRLD-RNPSPDELPQV 298
Query: 453 ---NFSDNSFMG 461
+ N F+
Sbjct: 299 GNLSLKGNPFLD 310
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312 | Back alignment and structure |
|---|
Score = 59.1 bits (143), Expect = 9e-10
Identities = 37/190 (19%), Positives = 54/190 (28%), Gaps = 22/190 (11%)
Query: 2 DFANNTLTG---SLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLT 58
+ N + L + P L+ L I H + L + LS N
Sbjct: 127 NLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPEL 186
Query: 59 GLIPRDI----GNLTSARALLLGNNN---LIGEIPHEIGNLHNLEYLVLENNNFDGPRH- 110
G + + L L N G L+ L L +N+
Sbjct: 187 GERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGA 246
Query: 111 ------SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWL 164
S L L L +P + +KLS+L + N PS L + L
Sbjct: 247 PSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLDLSYNRLD-RNPS-PDELPQVGNL 301
Query: 165 DLSFNYLTSS 174
L N S
Sbjct: 302 SLKGNPFLDS 311
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 67.3 bits (165), Expect = 9e-13
Identities = 56/180 (31%), Positives = 80/180 (44%), Gaps = 16/180 (8%)
Query: 244 LGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCN-LGRLVELQFYDNKLFGSIP 302
L NKL+ + +L KL+ LYL NKL+ ++P + L L L DNKL ++P
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL-QALP 101
Query: 303 ACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI----GNLK 357
+ +L L L L N L + P F SL + + N L SLP + +LK
Sbjct: 102 IGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLK 160
Query: 358 VVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNN 415
+ L N L +P L+ L L N+L+ +PE D L L+ L L N
Sbjct: 161 E---LRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLK-RVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 65.4 bits (160), Expect = 5e-12
Identities = 58/188 (30%), Positives = 80/188 (42%), Gaps = 29/188 (15%)
Query: 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVL 321
+ L L NKL + L +L L DNKL ++PA I +L L L + N L
Sbjct: 39 TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKL 97
Query: 322 TYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLS 381
+ F L ++ N L SLP P V L+
Sbjct: 98 QALPIGVFDQLVNLAELRLDRNQLK-SLP-----------------------PRVFDSLT 133
Query: 382 NLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNR 440
L + SL YN+LQ S+P+ + D L SL+ L L NN +F+KL L+ L L N+
Sbjct: 134 KLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQ 192
Query: 441 LKGEIPSG 448
LK +P G
Sbjct: 193 LK-RVPEG 199
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 63.8 bits (156), Expect = 1e-11
Identities = 50/179 (27%), Positives = 78/179 (43%), Gaps = 22/179 (12%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN------ 104
L N+L+ L + LT R L L +N L +P I L NLE L + +N
Sbjct: 44 LQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIFKELKNLETLWVTDNKLQALPI 102
Query: 105 --FDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTI-ANLRN 160
FD NL L L+RN ++P +F++ +KL+ L + N ++P + L +
Sbjct: 103 GVFDQL--VNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTS 158
Query: 161 LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
L+ L L N L E +F LK + L NQL + + +L L+ +
Sbjct: 159 LKELRLYNNQLK-RVPEGAF----DKLTELKTLKLDNNQLKRVPEGAFDSL-EKLKMLQ 211
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 4e-11
Identities = 42/189 (22%), Positives = 78/189 (41%), Gaps = 17/189 (8%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQC-QELIAISLSHNQLTGLIPR 63
+N L+ SLP L +L+ L +N+N + +P +++ + L + ++ N+L L
Sbjct: 46 SNKLS-SLPSKAFHRLTKLRLLYLNDNKLQT-LPAGIFKELKNLETLWVTDNKLQALPIG 103
Query: 64 DIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLE 114
L + L L N + +P + +L L YL L N FD ++L+
Sbjct: 104 VFDQLVNLAELRLDRNQ-LKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKL--TSLK 160
Query: 115 RLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173
L L N +P F ++L L + N +L L+ L L N
Sbjct: 161 ELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDC 219
Query: 174 STSELSFLS 182
+ + + +++
Sbjct: 220 TCNGIIYMA 228
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 59.2 bits (144), Expect = 5e-10
Identities = 56/231 (24%), Positives = 87/231 (37%), Gaps = 51/231 (22%)
Query: 53 SHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN------- 104
S +LT IP +I + L L +N + +P + L L L L +N
Sbjct: 24 SSKKLTA-IPSNI--PADTKKLDL-QSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAG 79
Query: 105 -FDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTI-ANLRNL 161
F NLE L++ N +P +F+ L+ L + N ++P + +L L
Sbjct: 80 IFKEL--KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKL 135
Query: 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMP 221
+L L +N L S + F +LK + L NQL
Sbjct: 136 TYLSLGYNELQ-SLPKGVF----DKLTSLKELRLYNNQLK-------------------- 170
Query: 222 YCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKN 271
R+PE L L T+ L N+L + L+KL+ L L +N
Sbjct: 171 ------RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 1e-08
Identities = 41/155 (26%), Positives = 63/155 (40%), Gaps = 29/155 (18%)
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
+K +IP+ I + + L L SN L+ + F L + + + N L +LP
Sbjct: 25 SKKLTAIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLP---- 77
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLS 413
+ L NL + NKLQ ++P + D L +L L L
Sbjct: 78 -------------------AGIFKELKNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLD 117
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
N PR F+ L L YL+L +N L+ +P G
Sbjct: 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQ-SLPKG 151
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 3e-04
Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 4/87 (4%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+D S L+ +IP+ I ++ L NKL ++ L L L L++N
Sbjct: 21 VDCSSKKLT-AIPSNI--PADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F++L LE L ++ N+L+ +P G
Sbjct: 78 AGIFKELKNLETLWVTDNKLQ-ALPIG 103
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 65.2 bits (158), Expect = 2e-11
Identities = 39/240 (16%), Positives = 75/240 (31%), Gaps = 40/240 (16%)
Query: 38 PRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL---IGEIPHEIGNLHN 94
R+ ++L LS + T ++ ++ + + L N I + + L
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400
Query: 95 LEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST 154
+ + + L R+ F + + +L + T+
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDL--TVLCH 458
Query: 155 IANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTS 214
+ L + LDLS N L + L+ R L+V+ + N L +
Sbjct: 459 LEQLLLVTHLDLSHNRLRALPPALA------ALRCLEVLQASDNAL------------EN 500
Query: 215 LEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG-SIPISLGKLQKLQGLYLYKNKL 273
+ + + NL L + L N+L + L +L L L N L
Sbjct: 501 V---------------DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL 545
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 62.1 bits (150), Expect = 2e-10
Identities = 50/318 (15%), Positives = 96/318 (30%), Gaps = 16/318 (5%)
Query: 103 NNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN-- 160
+ + E S + S++ L + + ++ + RN
Sbjct: 237 GRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPDGRNRP 296
Query: 161 --LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI 218
+ DL L + +F + K L ++
Sbjct: 297 SHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCE 355
Query: 219 YMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP 278
+S + E+ + L + + + + ++ L L K L+
Sbjct: 356 L--SVEKSTVLQSELESCKELQELEP---ENKWCLLTIILLMRALDPLLYEKETLQYFST 410
Query: 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
+ R L +K + + +R L L LT + L L L
Sbjct: 411 LKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCHLEQLLLVTHL-- 468
Query: 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG-SI 397
+ S N L +LP + L+ + + S N L ++ + L L L N+LQ +
Sbjct: 469 DLSHNRLR-ALPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAA 525
Query: 398 PESLGDLRSLEFLDLSNN 415
+ L L L+L N
Sbjct: 526 IQPLVSCPRLVLLNLQGN 543
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 60.2 bits (145), Expect = 7e-10
Identities = 34/196 (17%), Positives = 58/196 (29%), Gaps = 40/196 (20%)
Query: 11 SLPDDMCQHLPRLQALDINN--------NHVTGPVPRNLWQCQELIAISLSHNQLTGLIP 62
+ Q+ L+A+D + + ++ + L+H LT L
Sbjct: 399 LYEKETLQYFSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVLCH 458
Query: 63 RDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENN---NFDG-PRHSNLERLYL 118
+ L L L +N L +P + L LE L +N N DG L+ L L
Sbjct: 459 --LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVDGVANLPRLQELLL 515
Query: 119 ERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178
N + + + L L+L N L
Sbjct: 516 CNNRLQ-QSAAI----------------------QPLVSCPRLVLLNLQGNSLCQEEGIQ 552
Query: 179 SFLSSLRNCRNLKVID 194
L+ + ++ I
Sbjct: 553 ERLAEM--LPSVSSIL 566
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567 | Back alignment and structure |
|---|
Score = 59.8 bits (144), Expect = 1e-09
Identities = 35/198 (17%), Positives = 65/198 (32%), Gaps = 13/198 (6%)
Query: 247 NKLTGSIPISLGKLQKLQGLYLYKNKLEG--SIPDSLCNLGRLVELQFYDNKLFGSIPAC 304
++L L K S +S L L + +
Sbjct: 335 KDRPECWCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRA 394
Query: 305 IGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364
+ L + L + + L V P + + + V + L
Sbjct: 395 LDPLLYEKETLQYFSTLKAVDPM------RAAYLDDLRSKFLLENSVLKMEYADVRVLHL 448
Query: 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424
+ +L+ + + L + L++N+L+ ++P +L LR LE L S+N+
Sbjct: 449 AHKDLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DG 503
Query: 425 FEKLLYLEYLNLSFNRLK 442
L L+ L L NRL+
Sbjct: 504 VANLPRLQELLLCNNRLQ 521
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 62.7 bits (153), Expect = 3e-11
Identities = 38/215 (17%), Positives = 72/215 (33%), Gaps = 15/215 (6%)
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTI-ANLRNLQWLDLSF 168
+ + L L + TIPS F N +S + + + + S NL + +++
Sbjct: 31 PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89
Query: 169 NYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGR 228
+ + + LK + + L + + + +
Sbjct: 90 TRNLTYIDPDAL----KELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTS 145
Query: 229 IPEEI-GNLIN-LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP-DSLCNLG 285
IP L N +T+ L N T S+ KL +YL KNK I D+ +
Sbjct: 146 IPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVY 204
Query: 286 R-LVELQFYDNKLFGSIPACIGKLSPLRNLLLHSN 319
L + ++P+ L L+ L+ +
Sbjct: 205 SGPSLLDVSQTSV-TALPS--KGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 62.3 bits (152), Expect = 3e-11
Identities = 32/200 (16%), Positives = 70/200 (35%), Gaps = 20/200 (10%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNL-WQCQELIAISLSHNQLTGL 60
L ++P +LP + + ++ + + + + ++ I + + +
Sbjct: 37 KLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 61 IPRDI-GNLTSARALLLGNNNLIGEIPHE--IGNLHNLEYLVLENNN---------FDGP 108
I D L + L + N + P + + L + +N F G
Sbjct: 96 IDPDALKELPLLKFLGIFNTG-LKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQGL 154
Query: 109 RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPS-TIANLRN-LQWLDL 166
+ L L N F+ ++ + FN +KL + + N + I + + LD+
Sbjct: 155 C-NETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDV 212
Query: 167 SFNYLTS-STSELSFLSSLR 185
S +T+ + L L L
Sbjct: 213 SQTSVTALPSKGLEHLKELI 232
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.6 bits (150), Expect = 6e-11
Identities = 27/202 (13%), Positives = 61/202 (30%), Gaps = 37/202 (18%)
Query: 46 ELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN 104
+ L L + NL + + + + + ++ NL + ++ + N
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 105 ---------FDGPRHSNLERLYLERNNFSGTIP--SFIFNASKLSILGIRTNSFSGTIPS 153
L+ L + P + +++ IL I N + +IP
Sbjct: 92 NLTYIDPDALKE--LPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPV 148
Query: 154 -TIANLRN-LQWLDLSFNYLTS------STSELSFLSSLRNCR--------------NLK 191
L N L L N TS + ++L + +N
Sbjct: 149 NAFQGLCNETLTLKLYNNGFTSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 192 VIDLTGNQLHGILPSSMGNLST 213
++D++ + + + +L
Sbjct: 209 LLDVSQTSVTALPSKGLEHLKE 230
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 61.2 bits (149), Expect = 8e-11
Identities = 33/196 (16%), Positives = 67/196 (34%), Gaps = 15/196 (7%)
Query: 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL----LLHS 318
Q L L + L + NL + + + + + L + + ++
Sbjct: 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLES--HSFYNLSKVTHIEIRNT 90
Query: 319 NVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD--IGNLKVVVGIDLSRNNLSDSIPT- 375
LTY+ P L + + L P + + + ++++ N SIP
Sbjct: 91 RNLTYIDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIPVN 149
Query: 376 VIGGLSN-LAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR-SFEKLL-YLE 432
GL N L N S+ + L+ + L+ N + I + +F +
Sbjct: 150 AFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPS 208
Query: 433 YLNLSFNRLKGEIPSG 448
L++S + +PS
Sbjct: 209 LLDVSQTSVT-ALPSK 223
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 60.8 bits (148), Expect = 1e-10
Identities = 36/206 (17%), Positives = 70/206 (33%), Gaps = 8/206 (3%)
Query: 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP-DSLCNLGRLVELQFYDNK 296
+ T+ L L + L + +Y+ + + S NL ++ ++ + +
Sbjct: 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTR 91
Query: 297 LFGSIPA-CIGKLSPLRNLLLHSNVLTYVIPSTFL-SLRDILVFNFSSNSLNGSLPLDI- 353
I + +L L+ L + + L T + S + + N S+P++
Sbjct: 92 NLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSIPVNAF 151
Query: 354 -GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL--GDLRSLEFL 410
G + + L N + S+ + L L NK I + G L
Sbjct: 152 QGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLL 210
Query: 411 DLSNNSFSGFIPRSFEKLLYLEYLNL 436
D+S S + + E L L N
Sbjct: 211 DVSQTSVTALPSKGLEHLKELIARNT 236
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 2e-04
Identities = 14/94 (14%), Positives = 34/94 (36%), Gaps = 3/94 (3%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFSGF 420
+ L +L L N++ ++ + + S +L + +++ N +
Sbjct: 36 LKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY 95
Query: 421 IPRS-FEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
I ++L L++L + LK P +
Sbjct: 96 IDPDALKELPLLKFLGIFNTGLK-MFPDLTKVYS 128
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 64.1 bits (156), Expect = 3e-11
Identities = 31/153 (20%), Positives = 49/153 (32%), Gaps = 13/153 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D ++N L+ + L L +L +++NH+ L + LS N L L
Sbjct: 45 DLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLD 104
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRH-S 111
+L + LLL NN I + ++ L+ L L N
Sbjct: 105 EFLFSDLQALEVLLL-YNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLP 163
Query: 112 NLERLYLERNNFSGTIPSFIFNA-SKLSILGIR 143
L L L N +P G+
Sbjct: 164 KLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGLY 195
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 62.2 bits (151), Expect = 1e-10
Identities = 43/169 (25%), Positives = 70/169 (41%), Gaps = 16/169 (9%)
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPS-TIANLRNLQWLDLSF 168
S L L NN S + + L L + N + I S + NL++LDLS
Sbjct: 39 SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSS 97
Query: 169 NYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGR 228
N+L + + + L+V+ L N + + ++ ++ L+ +Y+ + S R
Sbjct: 98 NHLHTLDEF-----LFSDLQALEVLLLYNNHIVVVDRNAFEDM-AQLQKLYLSQNQIS-R 150
Query: 229 IPEEI----GNLINLITMSLGINKLTGSIPISLGKLQKL--QGLYLYKN 271
P E+ L L+ + L NKL L KL GLYL+ N
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNN 199
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 6/90 (6%)
Query: 362 IDLSRNNLSDSIP--TVIGGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFS 418
+DLS NNLS + L+NL L++N L I + + +L +LDLS+N
Sbjct: 44 LDLSHNNLS-RLRAEWTPTRLTNLHSLLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH 101
Query: 419 GFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F L LE L L N + +
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRN 130
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 55.6 bits (134), Expect = 1e-08
Identities = 40/161 (24%), Positives = 61/161 (37%), Gaps = 34/161 (21%)
Query: 289 ELQFYDNKLFGSIPACI--GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
L N L + A +L+ L +LLL N L ++ F+ +
Sbjct: 43 LLDLSHNNL-SRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP------------- 88
Query: 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPE-SLGDL 404
NL+ +DLS N+L ++ + L L L N + + + D+
Sbjct: 89 --------NLRY---LDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDM 135
Query: 405 RSLEFLDLSNNSFSGFIPRSF---EKLLYLEYLNLSFNRLK 442
L+ L LS N S F KL L L+LS N+LK
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLK 176
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 54.8 bits (132), Expect = 2e-08
Identities = 26/96 (27%), Positives = 44/96 (45%), Gaps = 6/96 (6%)
Query: 362 IDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLDLSNNSFSG 419
+ LS N+L+ I + + NL + L+ N L ++ DL++LE L L NN
Sbjct: 69 LLLSHNHLN-FISSEAFVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV 126
Query: 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455
+FE + L+ L LS N++ P + +
Sbjct: 127 VDRNAFEDMAQLQKLYLSQNQIS-RFPVE-LIKDGN 160
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361 | Back alignment and structure |
|---|
Score = 51.8 bits (124), Expect = 2e-07
Identities = 29/111 (26%), Positives = 48/111 (43%), Gaps = 8/111 (7%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQ-CQELIAISLSHNQLTGL 60
D ++N L +L + + L L+ L + NNH+ V RN ++ +L + LS NQ++
Sbjct: 94 DLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVV-VDRNAFEDMAQLQKLYLSQNQISRF 151
Query: 61 IP---RDIGNLTSARALLLGNNNLIGEIPHEIGNLHNL--EYLVLENNNFD 106
+D L L L +N L ++ L L L NN +
Sbjct: 152 PVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.9 bits (143), Expect = 3e-10
Identities = 26/133 (19%), Positives = 53/133 (39%), Gaps = 10/133 (7%)
Query: 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI----GNLKVVVGIDLSRN 367
+ L N + + P F + + + S+N ++ L D +L + L N
Sbjct: 35 TEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNS---LVLYGN 90
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFE 426
+++ ++ GL +L L NK+ + L +L L L +N +F
Sbjct: 91 KITELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149
Query: 427 KLLYLEYLNLSFN 439
L ++ ++L+ N
Sbjct: 150 PLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 5e-10
Identities = 30/131 (22%), Positives = 55/131 (41%), Gaps = 13/131 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
NT+ +P +L+ +D++NN ++ P + L ++ L N++T L
Sbjct: 38 RLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELP 96
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSN 112
L S + LLL N + + + +LHNL L L +N F
Sbjct: 97 KSLFEGLFSLQLLLLNANKI-NCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS--PLRA 153
Query: 113 LERLYLERNNF 123
++ ++L +N F
Sbjct: 154 IQTMHLAQNPF 164
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 3e-09
Identities = 21/88 (23%), Positives = 33/88 (37%), Gaps = 3/88 (3%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGF 420
I L +N + P L L+ N++ + LRSL L L N +
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
FE L L+ L L+ N++ +
Sbjct: 96 PKSLFEGLFSLQLLLLNANKIN-CLRVD 122
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 52.7 bits (127), Expect = 4e-08
Identities = 31/130 (23%), Positives = 50/130 (38%), Gaps = 14/130 (10%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN---- 104
I L N + + P R + L NN + E+ + L +L LVL N
Sbjct: 37 IRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAFQGLRSLNSLVLYGNKITEL 95
Query: 105 ----FDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLR 159
F+G +L+ L L N + + F L++L + N T + LR
Sbjct: 96 PKSLFEGL--FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 160 NLQWLDLSFN 169
+Q + L+ N
Sbjct: 153 AIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 51.2 bits (123), Expect = 1e-07
Identities = 36/134 (26%), Positives = 55/134 (41%), Gaps = 7/134 (5%)
Query: 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGIN 247
+ I L N + I P + L I + + S + + L +L ++ L N
Sbjct: 33 TITEIRLEQNTIKVIPPGAFSPY-KKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90
Query: 248 KLTGSIPISL-GKLQKLQGLYLYKNKLEGSIP-DSLCNLGRLVELQFYDNKLFGSIPACI 305
K+T +P SL L LQ L L NK+ + D+ +L L L YDNKL
Sbjct: 91 KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTF 148
Query: 306 GKLSPLRNLLLHSN 319
L ++ + L N
Sbjct: 149 SPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 49.6 bits (119), Expect = 5e-07
Identities = 31/147 (21%), Positives = 62/147 (42%), Gaps = 10/147 (6%)
Query: 126 TIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLR 185
IP+ + + + N+ P + + L+ +DLS N ++ + L
Sbjct: 25 EIPTNLPETIT--EIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDA--FQGL- 79
Query: 186 NCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSL 244
R+L + L GN++ + S L SL+ + + + + + +L NL +SL
Sbjct: 80 --RSLNSLVLYGNKITELPKSLFEGL-FSLQLLLL-NANKINCLRVDAFQDLHNLNLLSL 135
Query: 245 GINKLTGSIPISLGKLQKLQGLYLYKN 271
NKL + L+ +Q ++L +N
Sbjct: 136 YDNKLQTIAKGTFSPLRAIQTMHLAQN 162
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 8e-06
Identities = 32/132 (24%), Positives = 55/132 (41%), Gaps = 6/132 (4%)
Query: 289 ELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347
E++ N + IP LR + L +N ++ + P F LR + N +
Sbjct: 36 EIRLEQNTI-KVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKIT- 93
Query: 348 SLPLDI-GNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405
LP + L + + L+ N ++ + L NL SL NKLQ + LR
Sbjct: 94 ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLR 152
Query: 406 SLEFLDLSNNSF 417
+++ + L+ N F
Sbjct: 153 AIQTMHLAQNPF 164
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 58.5 bits (142), Expect = 4e-10
Identities = 36/151 (23%), Positives = 55/151 (36%), Gaps = 12/151 (7%)
Query: 55 NQLTGLIPRDIGNLTSARALLLGNN-NLIGEIPHEIGNLHNLEYLVLENNNF---DGPRH 110
+ + R T A + L I ++ + L ++L L NN
Sbjct: 9 DAIRIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEKISSLSG 68
Query: 111 -SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
NL L L RN I + A L L I N + ++ S I L NL+ L +S N
Sbjct: 69 MENLRILSLGRNLIK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNN 125
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200
+ + + L L+ + L GN L
Sbjct: 126 KI----TNWGEIDKLAALDKLEDLLLAGNPL 152
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198 | Back alignment and structure |
|---|
Score = 49.7 bits (119), Expect = 4e-07
Identities = 37/154 (24%), Positives = 69/154 (44%), Gaps = 19/154 (12%)
Query: 151 IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN 210
+ +T++ L+ + L LS N + +SSL NL+++ L N + I ++
Sbjct: 40 MDATLSTLKACKHLALSTNNIEK-------ISSLSGMENLRILSLGRNLIKKI--ENLDA 90
Query: 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPIS-LGKLQKLQGLYLY 269
++ +LE +++ Y + + + I L+NL + + NK+T I L L KL+ L L
Sbjct: 91 VADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLA 148
Query: 270 KNKLEGSIPDSLCN-------LGRLVELQFYDNK 296
N L ++ + RL L+ D
Sbjct: 149 GNPLYNDYKENNATSEYRIEVVKRLPNLKKLDGM 182
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 57.8 bits (140), Expect = 1e-09
Identities = 47/160 (29%), Positives = 74/160 (46%), Gaps = 13/160 (8%)
Query: 294 DNKLFGSIPACIGKLSPL--RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351
K S+P+ I P L L S L + +TF L + N N L +L
Sbjct: 22 QGKSLDSVPSGI----PADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSA 76
Query: 352 DI-GNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLE 408
+ +L + + L+ N L+ S+P V L+ L L N+L+ S+P + D L L+
Sbjct: 77 GVFDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLK-SLPSGVFDRLTKLK 134
Query: 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
L L+ N +F+KL L+ L+LS N+L+ +P G
Sbjct: 135 ELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQS-VPHG 173
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 53.9 bits (130), Expect = 2e-08
Identities = 44/178 (24%), Positives = 64/178 (35%), Gaps = 28/178 (15%)
Query: 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVLT 322
+ L L L + L +L L N+L ++ A + L+ L L L +N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96
Query: 323 YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSN 382
+ F L + N L SLP V L+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLK-SLP-----------------------SGVFDRLTK 132
Query: 383 LAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L L N+LQ SIP D L +L+ L LS N +F++L L+ + L N
Sbjct: 133 LKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 8e-08
Identities = 47/186 (25%), Positives = 70/186 (37%), Gaps = 38/186 (20%)
Query: 114 ERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTI-ANLRNLQWLDLSFNYLT 172
E+L L+ + + +KL+ L + N T+ + + +L L L L+ N L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLA 96
Query: 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE 232
S F L + L GNQL SL P
Sbjct: 97 -SLPLGVFDH----LTQLDKLYLGGNQL------------KSL--------------PSG 125
Query: 233 I-GNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPD-SLCNLGRLVE 289
+ L L + L N+L SIP KL LQ L L N+L+ S+P + LG+L
Sbjct: 126 VFDRLTKLKELRLNTNQLQ-SIPAGAFDKLTNLQTLSLSTNQLQ-SVPHGAFDRLGKLQT 183
Query: 290 LQFYDN 295
+ + N
Sbjct: 184 ITLFGN 189
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 2e-07
Identities = 38/168 (22%), Positives = 60/168 (35%), Gaps = 20/168 (11%)
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN--------FDGPRHSN 112
+P I L L + L L L +L L+ N FD +
Sbjct: 29 VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDL--TE 84
Query: 113 LERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
L L L N + ++P +F+ ++L L + N L L+ L L+ N L
Sbjct: 85 LGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQL 143
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
S +F NL+ + L+ NQL + + L L+ I
Sbjct: 144 Q-SIPAGAF----DKLTNLQTLSLSTNQLQSVPHGAFDRL-GKLQTIT 185
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 6e-06
Identities = 44/169 (26%), Positives = 67/169 (39%), Gaps = 14/169 (8%)
Query: 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIG 83
+ LD+ + + +L ++L +NQL L +LT L L NN L
Sbjct: 38 EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQL-A 96
Query: 84 EIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
+P + +L L+ L L N FD R + L+ L L N +IP+ F+
Sbjct: 97 SLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFD--RLTKLKELRLNTNQLQ-SIPAGAFDK 153
Query: 135 -SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLS 182
+ L L + TN L LQ + L N S E+ +LS
Sbjct: 154 LTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSRCEILYLS 202
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 4e-05
Identities = 39/135 (28%), Positives = 51/135 (37%), Gaps = 19/135 (14%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-P--VPRNLWQCQELIAISLSHNQL 57
++ N L +L + L L L + NN + P V +L Q +L L NQL
Sbjct: 64 LNLDYNQLQ-TLSAGVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKL---YLGGNQL 119
Query: 58 TGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGP 108
L LT + L L N L IP L NL+ L L N FD
Sbjct: 120 KSLPSGVFDRLTKLKELRLNTNQL-QSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFD-- 176
Query: 109 RHSNLERLYLERNNF 123
R L+ + L N F
Sbjct: 177 RLGKLQTITLFGNQF 191
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 55.4 bits (134), Expect = 5e-09
Identities = 29/131 (22%), Positives = 53/131 (40%), Gaps = 12/131 (9%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
NN T + + LP+L+ ++ +NN +T + I L+ N+L +
Sbjct: 38 RLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQ 97
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSN 112
+ L S + L+L +N + + ++ L ++ L L +N FD +
Sbjct: 98 HKMFKGLESLKTLMLRSNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFD--TLHS 154
Query: 113 LERLYLERNNF 123
L L L N F
Sbjct: 155 LSTLNLLANPF 165
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 3e-08
Identities = 23/95 (24%), Positives = 41/95 (43%), Gaps = 3/95 (3%)
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLS 413
L + I+ S N ++D G S + L N+L+ ++ + L SL+ L L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113
Query: 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+N + SF L + L+L N++ + G
Sbjct: 114 SNRITCVGNDSFIGLSSVRLLSLYDNQIT-TVAPG 147
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 52.4 bits (126), Expect = 5e-08
Identities = 33/173 (19%), Positives = 60/173 (34%), Gaps = 37/173 (21%)
Query: 150 TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
IP I + L L+ N T + F + L+ I+ + N++ I +
Sbjct: 25 KIPEHIP--QYTAELRLNNNEFTVLEATGIF----KKLPQLRKINFSNNKITDIEEGAFE 78
Query: 210 NLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYL 268
S + + L N+L ++ + L+ L+ L L
Sbjct: 79 GAS-------------------------GVNEILLTSNRLE-NVQHKMFKGLESLKTLML 112
Query: 269 YKNKLEGSIP-DSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSN 319
N++ + DS L + L YDN++ ++ L L L L +N
Sbjct: 113 RSNRIT-CVGNDSFIGLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 4/114 (3%)
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFY 293
L L ++ NK+T + + + L N+LE ++ + L L L
Sbjct: 55 KLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE-NVQHKMFKGLESLKTLMLR 113
Query: 294 DNKLFGSIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
N++ + LS +R L L+ N +T V P F +L + N +N N
Sbjct: 114 SNRI-TCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFN 166
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 50.4 bits (121), Expect = 3e-07
Identities = 18/89 (20%), Positives = 36/89 (40%), Gaps = 4/89 (4%)
Query: 362 IDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFSG 419
+ L+ N + T + L L + + NK+ I E + + + L++N
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN 95
Query: 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+ F+ L L+ L L NR+ + +
Sbjct: 96 VQHKMFKGLESLKTLMLRSNRIT-CVGND 123
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 49.3 bits (118), Expect = 6e-07
Identities = 32/154 (20%), Positives = 53/154 (34%), Gaps = 29/154 (18%)
Query: 289 ELQFYDNKLFGSIP--ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
EL+ +N+ + KL LR + +N +T + F
Sbjct: 36 ELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGAS------------- 81
Query: 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LR 405
+ I L+ N L + + GL +L L N++ + L
Sbjct: 82 --------GVNE---ILLTSNRLENVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLS 129
Query: 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
S+ L L +N + P +F+ L L LNL N
Sbjct: 130 SVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 29/131 (22%), Positives = 50/131 (38%), Gaps = 15/131 (11%)
Query: 50 ISLSHNQLTGLIPRDI-GNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--- 104
+ L++N+ T L I L R + NN I +I + ++L +N
Sbjct: 37 LRLNNNEFTVLEATGIFKKLPQLRKINFSNNK-ITDIEEGAFEGASGVNEILLTSNRLEN 95
Query: 105 -----FDGPRHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANL 158
F G +L+ L L N + + + F S + +L + N + P L
Sbjct: 96 VQHKMFKGL--ESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTL 152
Query: 159 RNLQWLDLSFN 169
+L L+L N
Sbjct: 153 HSLSTLNLLAN 163
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220 | Back alignment and structure |
|---|
Score = 46.6 bits (111), Expect = 5e-06
Identities = 27/163 (16%), Positives = 52/163 (31%), Gaps = 33/163 (20%)
Query: 111 SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
L L N F+ + IF +L + N + + + L+ N
Sbjct: 32 QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRI 229
L + ++ + +LK + L N++ + S LS
Sbjct: 92 RLENVQHKM-----FKGLESLKTLMLRSNRITCVGNDSFIGLS----------------- 129
Query: 230 PEEIGNLINLITMSLGINKLTGSIPI-SLGKLQKLQGLYLYKN 271
++ +SL N++T ++ + L L L L N
Sbjct: 130 --------SVRLLSLYDNQIT-TVAPGAFDTLHSLSTLNLLAN 163
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 56.2 bits (136), Expect = 6e-09
Identities = 55/211 (26%), Positives = 85/211 (40%), Gaps = 37/211 (17%)
Query: 241 TMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP--DSLCNLGRLVELQFYDNKLF 298
+L +T + +L + + + ++ S+ L N+ L NKL
Sbjct: 23 KANLKKKSVT-DAV-TQNELNSIDQIIANNSDIK-SVQGIQYLPNVRYL---ALGGNKL- 75
Query: 299 GSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKV 358
I A +L+ L L+L N L + F L ++ N L SLP
Sbjct: 76 HDISAL-KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ-SLP-------- 125
Query: 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSF 417
V L+NL + +LA+N+LQ S+P+ + D L +L LDLS N
Sbjct: 126 ---------------DGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQL 169
Query: 418 SGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+KL L+ L L N+LK +P G
Sbjct: 170 QSLPEGVFDKLTQLKDLRLYQNQLKS-VPDG 199
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 55.8 bits (135), Expect = 8e-09
Identities = 59/252 (23%), Positives = 91/252 (36%), Gaps = 70/252 (27%)
Query: 52 LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN------F 105
L +T + ++ L S ++ N+++ I L N+ YL L N
Sbjct: 26 LKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVRYLALGGNKLHDISAL 81
Query: 106 DGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165
+NL L L N ++P+ +F+ L NL+ L
Sbjct: 82 K--ELTNLTYLILTGNQLQ-SLPNGVFD-----------------------KLTNLKELV 115
Query: 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225
L N L S + L NL ++L NQL SL
Sbjct: 116 LVENQLQSLPDGV--FDKL---TNLTYLNLAHNQL------------QSLP--------- 149
Query: 226 SGRIPEEIGNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPD-SLCN 283
L NL + L N+L S+P + KL +L+ L LY+N+L+ S+PD
Sbjct: 150 ----KGVFDKLTNLTELDLSYNQLQ-SLPEGVFDKLTQLKDLRLYQNQLK-SVPDGVFDR 203
Query: 284 LGRLVELQFYDN 295
L L + +DN
Sbjct: 204 LTSLQYIWLHDN 215
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272 | Back alignment and structure |
|---|
Score = 43.9 bits (104), Expect = 6e-05
Identities = 36/132 (27%), Positives = 52/132 (39%), Gaps = 19/132 (14%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVT---GPVPRNLWQCQELIAISLSHNQLT 58
N L SLP+ + L L+ L + N + V L L +L+HNQL
Sbjct: 91 ILTGNQLQ-SLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYL---NLAHNQLQ 146
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGPR 109
L LT+ L L N L +P + L L+ L L N FD R
Sbjct: 147 SLPKGVFDKLTNLTELDLSYNQL-QSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFD--R 203
Query: 110 HSNLERLYLERN 121
++L+ ++L N
Sbjct: 204 LTSLQYIWLHDN 215
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 55.5 bits (133), Expect = 1e-08
Identities = 23/110 (20%), Positives = 37/110 (33%), Gaps = 6/110 (5%)
Query: 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLDLSNNSFS 418
G+ +R+ + G NL + + + L L L L + +
Sbjct: 11 SGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR 69
Query: 419 GFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFM--GNSFLC 466
P +F L LNLSFN L+ + + S + GN C
Sbjct: 70 FVAPDAFHFTPRLSRLNLSFNALE-SLSWK-TVQGLSLQELVLSGNPLHC 117
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 52.0 bits (124), Expect = 2e-07
Identities = 13/111 (11%), Positives = 27/111 (24%), Gaps = 9/111 (8%)
Query: 44 CQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHE-IGNLHNLEYLVLEN 102
+ + + + + L + N + + + L L L +
Sbjct: 7 PHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVK 65
Query: 103 NNFDG-PRH-----SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSF 147
+ L RL L N ++ L L + N
Sbjct: 66 SGLRFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 50.1 bits (119), Expect = 7e-07
Identities = 26/107 (24%), Positives = 39/107 (36%), Gaps = 11/107 (10%)
Query: 100 LENNNFDGPRH----SNLERLYLERNNFSGTIPSFIF-NASKLSILGIRTNSFSGTIPST 154
+ D H NL LY+E + +L L I + P
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDA 75
Query: 155 IANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLH 201
L L+LSFN L S + + + L +L+ + L+GN LH
Sbjct: 76 FHFTPRLSRLNLSFNALESLSWKT--VQGL----SLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 46.7 bits (110), Expect = 9e-06
Identities = 20/103 (19%), Positives = 29/103 (28%), Gaps = 4/103 (3%)
Query: 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD-SLCNLGRLVELQFYDNKLFGSIPAC 304
L + L LY+ + + L LG L L + L +
Sbjct: 16 TRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPD 74
Query: 305 I-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
L L L N L + T L + S N L+
Sbjct: 75 AFHFTPRLSRLNLSFNALESLSWKTVQGLS-LQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 17/77 (22%), Positives = 27/77 (35%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
N L + L L+ L I + + P L ++LS N L L
Sbjct: 37 YIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLS 96
Query: 62 PRDIGNLTSARALLLGN 78
+ + L+ +L GN
Sbjct: 97 WKTVQGLSLQELVLSGN 113
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 43.2 bits (101), Expect = 1e-04
Identities = 19/79 (24%), Positives = 28/79 (35%), Gaps = 2/79 (2%)
Query: 276 SIPDSLCNLGRLVELQFYDNKLFGSIPA-CIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334
L L EL + + + + L LRNL + + L +V P F
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPR 81
Query: 335 ILVFNFSSNSLNGSLPLDI 353
+ N S N+L SL
Sbjct: 82 LSRLNLSFNALE-SLSWKT 99
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 42.0 bits (98), Expect = 3e-04
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 4/103 (3%)
Query: 223 CRRSG--RIPEEIGNLINLITMSLGINKLTGSIP-ISLGKLQKLQGLYLYKNKLEGSIPD 279
C R G + NL + + + + L L +L+ L + K+ L PD
Sbjct: 15 CTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPD 74
Query: 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT 322
+ RL L N L S+ + L+ L+L N L
Sbjct: 75 AFHFTPRLSRLNLSFNAL-ESLSWKTVQGLSLQELVLSGNPLH 116
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347 | Back alignment and structure |
|---|
Score = 40.5 bits (94), Expect = 8e-04
Identities = 14/102 (13%), Positives = 31/102 (30%), Gaps = 8/102 (7%)
Query: 150 TIPSTIANLRNLQWLDLSFN-YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSM 208
+ NL L + +L LR L+ + + + L + P +
Sbjct: 22 DSLHHLPGAENLTELYIENQQHLQHLELR-----DLRGLGELRNLTIVKSGLRFVAPDAF 76
Query: 209 GNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT 250
L + + + + + ++L + L N L
Sbjct: 77 HFT-PRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.6 bits (133), Expect = 3e-08
Identities = 83/546 (15%), Positives = 164/546 (30%), Gaps = 146/546 (26%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQAL--DINNNHVTGPVPRNLWQCQELIAISLSHNQLT 58
MDF D+ A + + V +P+++ +E+ I +S + ++
Sbjct: 7 MDFETGEHQYQY-KDILSVF--EDAFVDNFDCKDVQ-DMPKSILSKEEIDHIIMSKDAVS 62
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY------LVLENNNFDGPRHSN 112
G + R LL ++ + + + + Y + E P S
Sbjct: 63 GTL-RLFW------TLLSKQEEMVQKF---VEEVLRINYKFLMSPIKTEQR---QP--SM 107
Query: 113 LERLYLE-RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
+ R+Y+E R+ F +K ++ + LR
Sbjct: 108 MTRMYIEQRDRLYNDNQVF----AKYNV----------SRLQPYLKLRQA---------- 143
Query: 172 TSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN-----LSTSLEYIYMPYCRRS 226
L LR +N+ + G + ++ + C S
Sbjct: 144 ---------LLELRPAKNVLI--------DG-----VLGSGKTWVALDV-------CL-S 173
Query: 227 GRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLG- 285
++ ++ I + + ++ L+ LQ L + S D N+
Sbjct: 174 YKVQCKMDFKIFWLNL--KNCNSPETV------LEMLQKLLYQIDPNWTSRSDHSSNIKL 225
Query: 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLL------HSNVLTYVIPS--TFLSLRDILV 337
R+ +Q +L K P N LL ++ S L+ R V
Sbjct: 226 RIHSIQAELRRLL--------KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQV 277
Query: 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS- 396
+F S + + LD + + + D ++ L + L L N + S
Sbjct: 278 TDFLSAATTTHISLD--HHSMTLTPDEVKSLLLKYLDCRPQDLPREV---LTTNPRRLSI 332
Query: 397 IPESLGD--LRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANF 454
I ES+ D + ++ + + I S L EY + F + + F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-F----------DRLSVF 381
Query: 455 SDNSFMGNSFLC---GSPNLQVPPRKDIKTSPHRKS---RKNTRSSARLPS-------SC 501
++ + L + H+ S ++ S+ +PS
Sbjct: 382 PPSAHIPTILLSLIWFDVIKSDVM--VVVNKLHKYSLVEKQPKESTISIPSIYLELKVKL 439
Query: 502 EILPAL 507
E AL
Sbjct: 440 ENEYAL 445
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 54.5 bits (130), Expect = 6e-08
Identities = 83/499 (16%), Positives = 173/499 (34%), Gaps = 143/499 (28%)
Query: 29 NNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNL----------TSARALLLGN 78
N+N V N+ + Q + + L L R N+ T + +
Sbjct: 121 NDNQVF--AKYNVSRLQPYLKL---RQALLEL--RPAKNVLIDGVLGSGKTWVALDVCLS 173
Query: 79 NNLIGEIPHEI-----GNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFN 133
+ ++ +I N ++ E ++ ++ + R++ S I I +
Sbjct: 174 YKVQCKMDFKIFWLNLKNCNSPETVLEMLQKL----LYQIDPNWTSRSDHSSNIKLRIHS 229
Query: 134 A-SKLSILGIRTNSFSGTIPSTIANLRNLQW----LDLSFNY------LTSSTSELSFLS 182
++L L +++ + + + L N+ + +FN T FLS
Sbjct: 230 IQAELRRL-LKSKPY----ENCLLVLLNV-QNAKAWN-AFNLSCKILLTTRFKQVTDFLS 282
Query: 183 SLRNCRNLKVID----LTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI--GN- 235
+ + + LT +++ +L L+Y+ R +P E+ N
Sbjct: 283 AATTTH-ISLDHHSMTLTPDEVKSLL----------LKYLDC----RPQDLPREVLTTNP 327
Query: 236 -LINLITMSL-------------GINKLTGSIPISLGKLQ--KLQGLY------------ 267
+++I S+ +KLT I SL L+ + + ++
Sbjct: 328 RRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHI 387
Query: 268 -------LYKNKLEGSIPDSLCNLGR--LVELQFYDNKLFGSIPACIGKLS-PLRNLL-L 316
++ + ++ + + L + LVE Q ++ + SIP+ +L L N L
Sbjct: 388 PTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTI--SIPSIYLELKVKLENEYAL 445
Query: 317 HSNVLT-YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG-NLKVVVGIDLSRNNLSDSIP 374
H +++ Y IP TF S + L+ IG +LK ++
Sbjct: 446 HRSIVDHYNIPKTFDS------DDLIPPYLDQYFYSHIGHHLK-----NIEHPERMTLFR 494
Query: 375 TVIGGLSNLAFFSLAYNKL---------QGSIPESLGDLRSLE-FLDLSNNSFSG----- 419
V + F K+ GSI +L L+ + ++ ++ +
Sbjct: 495 MV---FLDFRFLE---QKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAI 548
Query: 420 --FIPRSFEKLLYLEYLNL 436
F+P+ E L+ +Y +L
Sbjct: 549 LDFLPKIEENLICSKYTDL 567
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 43.7 bits (102), Expect = 1e-04
Identities = 50/316 (15%), Positives = 103/316 (32%), Gaps = 83/316 (26%)
Query: 3 FAN--NTLTGSLPDDMCQHLPRLQAL---------DINNN--HVTGPVPRNLWQCQELIA 49
+ LP ++ PR ++ +N HV N + +I
Sbjct: 307 LLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHV------NCDKLTTIIE 360
Query: 50 ISLSHNQLT-----------GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGN-LHNLEY 97
SL N L + P ++ + L+ ++I + N LH Y
Sbjct: 361 SSL--NVLEPAEYRKMFDRLSVFPPSA-HIPTILLSLIW-FDVIKSDVMVVVNKLHK--Y 414
Query: 98 LVLENNNFDGPR--HS-------------NLERLYLERNNFSGTIPSFIFNASKLSILGI 142
++E + S L R ++ N T F++ L +
Sbjct: 415 SLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKT-----FDSDDLIPPYL 469
Query: 143 RTNSFSGTIPSTIANLRNLQWLDLSFN--YLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200
+S I + N+ + + + L F +L + FL K+
Sbjct: 470 DQYFYS-HIGHHLKNIEHPERMTL-FRMVFL-----DFRFLEQ-------KIR-HDSTAW 514
Query: 201 HGILPSSMGNLSTSLEYIYMPYCRRSGRIPEE-IGNLINLI---TMSLGINKLTGSIPIS 256
+ S+ N L++ Y PY + E + +++ + +L +K T + I+
Sbjct: 515 NA--SGSILNTLQQLKF-YKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 257 LGKLQKLQGLYLYKNK 272
L + + + ++ +K
Sbjct: 572 L--MAEDEAIFEEAHK 585
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 52.8 bits (127), Expect = 5e-08
Identities = 27/87 (31%), Positives = 42/87 (48%), Gaps = 3/87 (3%)
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFI 421
L N ++ P V L NL L N+L ++P + D L L LDL N +
Sbjct: 46 YLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTVLP 104
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F++L++L+ L + N+L E+P G
Sbjct: 105 SAVFDRLVHLKELFMCCNKLT-ELPRG 130
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 43/151 (28%), Positives = 66/151 (43%), Gaps = 13/151 (8%)
Query: 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI 353
+K S+PA I + + L LH N +T + P F SL ++ SN L +LP+ +
Sbjct: 27 RSKRHASVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGV 83
Query: 354 ----GNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408
L V +DL N L+ +P+ V L +L + NKL +P + L L
Sbjct: 84 FDSLTQLTV---LDLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLT 138
Query: 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439
L L N +F++L L + L N
Sbjct: 139 HLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 38/131 (29%), Positives = 53/131 (40%), Gaps = 18/131 (13%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-P--VPRNLWQCQELIAISLSHNQLT 58
+N +T L + L L+ L + +N + P V +L Q L L NQLT
Sbjct: 46 YLHDNQIT-KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVL---DLGTNQLT 101
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN--------FDGPRH 110
L L + L + N L E+P I L +L +L L+ N FD R
Sbjct: 102 VLPSAVFDRLVHLKELFMCCNKL-TELPRGIERLTHLTHLALDQNQLKSIPHGAFD--RL 158
Query: 111 SNLERLYLERN 121
S+L YL N
Sbjct: 159 SSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 2e-06
Identities = 40/159 (25%), Positives = 61/159 (38%), Gaps = 35/159 (22%)
Query: 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
IL + N + P +L NL+ L L N L + + + L V+DL N
Sbjct: 44 ILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGV-----FDSLTQLTVLDLGTN 98
Query: 199 QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEI-GNLINLITMSLGINKLTGSIPISL 257
QL T L P + L++L + + NKLT +P +
Sbjct: 99 QL------------TVL--------------PSAVFDRLVHLKELFMCCNKLT-ELPRGI 131
Query: 258 GKLQKLQGLYLYKNKLEGSIPD-SLCNLGRLVELQFYDN 295
+L L L L +N+L+ SIP + L L + N
Sbjct: 132 ERLTHLTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 8e-06
Identities = 43/154 (27%), Positives = 65/154 (42%), Gaps = 29/154 (18%)
Query: 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVLT 322
Q LYL+ N++ P +L L EL N+L G++P + L+ L L L +N LT
Sbjct: 43 QILYLHDNQITKLEPGVFDSLINLKELYLGSNQL-GALPVGVFDSLTQLTVLDLGTNQLT 101
Query: 323 YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSN 382
+ + F L +LK + + N L+ +P I L++
Sbjct: 102 VLPSAVFDRL---------------------VHLKE---LFMCCNKLT-ELPRGIERLTH 136
Query: 383 LAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNN 415
L +L N+L+ SIP D L SL L N
Sbjct: 137 LTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGN 169
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 51.6 bits (124), Expect = 1e-07
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 3/87 (3%)
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFI 421
DL N+L V L++L L NKLQ S+P + + L SL +L+LS N
Sbjct: 34 DLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQSLP 92
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+KL L+ L L+ N+L+ +P G
Sbjct: 93 NGVFDKLTQLKELALNTNQLQ-SLPDG 118
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 2e-06
Identities = 40/156 (25%), Positives = 61/156 (39%), Gaps = 29/156 (18%)
Query: 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI 353
++ S+P I + L L +N L + F L + N L SLP
Sbjct: 15 YSQGRTSVPTGIP--AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLP--- 68
Query: 354 GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDL 412
V L++L + +L+ N+LQ S+P + D L L+ L L
Sbjct: 69 --------------------NGVFNKLTSLTYLNLSTNQLQ-SLPNGVFDKLTQLKELAL 107
Query: 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
+ N F+KL L+ L L N+LK +P G
Sbjct: 108 NTNQLQSLPDGVFDKLTQLKDLRLYQNQLKS-VPDG 142
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 41/158 (25%), Positives = 63/158 (39%), Gaps = 34/158 (21%)
Query: 140 LGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199
L + TNS L +L L L N L S + + + L +L ++L+ NQ
Sbjct: 33 LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGV--FNKL---TSLTYLNLSTNQ 87
Query: 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISL-G 258
L SL L L ++L N+L S+P +
Sbjct: 88 L------------QSLP-------------NGVFDKLTQLKELALNTNQLQ-SLPDGVFD 121
Query: 259 KLQKLQGLYLYKNKLEGSIPD-SLCNLGRLVELQFYDN 295
KL +L+ L LY+N+L+ S+PD L L + +DN
Sbjct: 122 KLTQLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 1e-04
Identities = 39/133 (29%), Positives = 58/133 (43%), Gaps = 12/133 (9%)
Query: 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348
L N L +L+ L L L N L + F L + N S+N L S
Sbjct: 32 YLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQ-S 90
Query: 349 LPLDI----GNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGD 403
LP + LK + L+ N L S+P V L+ L L N+L+ S+P+ + D
Sbjct: 91 LPNGVFDKLTQLKE---LALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPDGVFD 145
Query: 404 -LRSLEFLDLSNN 415
L SL+++ L +N
Sbjct: 146 RLTSLQYIWLHDN 158
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 38/133 (28%), Positives = 54/133 (40%), Gaps = 19/133 (14%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG-P--VPRNLWQCQELIAISLSHNQL 57
+D N+L SLP+ + L L L + N + P V L L +LS NQL
Sbjct: 33 LDLETNSLK-SLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYL---NLSTNQL 88
Query: 58 TGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNN--------FDGP 108
L LT + L L N L +P + L L+ L L N FD
Sbjct: 89 QSLPNGVFDKLTQLKELALNTNQL-QSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFD-- 145
Query: 109 RHSNLERLYLERN 121
R ++L+ ++L N
Sbjct: 146 RLTSLQYIWLHDN 158
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 51.1 bits (123), Expect = 1e-07
Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 5/92 (5%)
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFI 421
L N + +P + +L L+ N++ ++ + L L LS N
Sbjct: 37 YLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRCIP 94
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
PR+F+ L L L+L N + +P G +F +
Sbjct: 95 PRTFDGLKSLRLLSLHGNDIS-VVPEG-AFND 124
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 4e-05
Identities = 30/107 (28%), Positives = 45/107 (42%), Gaps = 13/107 (12%)
Query: 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIG 83
L ++ N T VP+ L + L I LS+N+++ L + N+T L+L N L
Sbjct: 34 TELYLDGNQFTL-VPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL-R 91
Query: 84 EIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLERLYLERN 121
IP L +L L L N+ F+ S L L + N
Sbjct: 92 CIPPRTFDGLKSLRLLSLHGNDISVVPEGAFN--DLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 9e-05
Identities = 34/117 (29%), Positives = 49/117 (41%), Gaps = 11/117 (9%)
Query: 325 IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384
IP L N +P ++ N K + IDLS N +S ++ L
Sbjct: 29 IPRDVTELY------LDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 385 FFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFIPR-SFEKLLYLEYLNLSFN 439
L+YN+L+ IP D L+SL L L N S +P +F L L +L + N
Sbjct: 82 TLILSYNRLR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGAN 136
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.9 bits (99), Expect = 1e-04
Identities = 26/94 (27%), Positives = 39/94 (41%), Gaps = 9/94 (9%)
Query: 229 IPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288
IP ++ L L N+ T +P L + L + L N++ S N+ +L+
Sbjct: 29 IPRDVTEL------YLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLL 81
Query: 289 ELQFYDNKLFGSIPACI-GKLSPLRNLLLHSNVL 321
L N+L IP L LR L LH N +
Sbjct: 82 TLILSYNRL-RCIPPRTFDGLKSLRLLSLHGNDI 114
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 25/109 (22%), Positives = 53/109 (48%), Gaps = 7/109 (6%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
++ LYL+ N F+ +P + N L+++ + N S + +N+ L L LS+N
Sbjct: 31 RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY 219
L +F L ++L+++ L GN + + + +L ++L ++
Sbjct: 90 LR-CIPPRTF-DGL---KSLRLLSLHGNDISVVPEGAFNDL-SALSHLA 132
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 48.9 bits (117), Expect = 5e-07
Identities = 23/128 (17%), Positives = 36/128 (28%), Gaps = 16/128 (12%)
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNNFD-----GPRHSNLERLYLERNNFS--GTIPSF 130
LI + + N L L G + + N P
Sbjct: 5 TAELIEQAA-QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIRKLDGFPLL 63
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNL 190
+L L + N L +L L L+ N L EL L L + ++L
Sbjct: 64 ----RRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSL----VELGDLDPLASLKSL 115
Query: 191 KVIDLTGN 198
+ + N
Sbjct: 116 TYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 47.0 bits (112), Expect = 2e-06
Identities = 26/112 (23%), Positives = 41/112 (36%), Gaps = 12/112 (10%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLW-QCQELIAISLSHNQLTGLIPRDIGNLTSARALLL 76
+ R + LD+ + V NL + AI S N++ L L + LL+
Sbjct: 16 TNAVRDRELDLRGYKIP--VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLV 71
Query: 77 GNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-------SNLERLYLERN 121
NN + L +L L+L NN+ +L L + RN
Sbjct: 72 NNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 5e-05
Identities = 18/92 (19%), Positives = 43/92 (46%), Gaps = 5/92 (5%)
Query: 14 DDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARA 73
+++ L + A+D ++N + + L + +++N++ + L
Sbjct: 35 ENLGATLDQFDAIDFSDNEIR--KLDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92
Query: 74 LLLGNNNL--IGEIPHEIGNLHNLEYLVLENN 103
L+L NN+L +G++ + +L +L YL + N
Sbjct: 93 LILTNNSLVELGDL-DPLASLKSLTYLCILRN 123
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176 | Back alignment and structure |
|---|
Score = 40.8 bits (96), Expect = 3e-04
Identities = 24/133 (18%), Positives = 44/133 (33%), Gaps = 12/133 (9%)
Query: 164 LDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYC 223
+ L+ + + + N + +DL G ++ I ++G + I
Sbjct: 2 VKLTAELIEQA-------AQYTNAVRDRELDLRGYKIPVI--ENLGATLDQFDAIDFSDN 52
Query: 224 RRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEG-SIPDSLC 282
++ + L L T+ + N++ L L L L N L D L
Sbjct: 53 E-IRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLA 110
Query: 283 NLGRLVELQFYDN 295
+L L L N
Sbjct: 111 SLKSLTYLCILRN 123
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 50.5 bits (121), Expect = 7e-07
Identities = 42/225 (18%), Positives = 66/225 (29%), Gaps = 49/225 (21%)
Query: 23 LQALDINNNHVTG----PVPRNLWQCQELIAISLSHNQLTG----LIPRDIGNLTSARAL 74
++ + + +T V L + + I LS N + + +I +
Sbjct: 6 IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65
Query: 75 LLGNNNLIGEIPHEIG-----------NLHNLEYLVLENNNFDGPR-----------HSN 112
+ G + EI L + L +N F GP H+
Sbjct: 66 EFSDIF-TGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAF-GPTAQEPLIDFLSKHTP 123
Query: 113 LERLYLERNNFS-------------GTIPSFIFNASKLSILGIRTNSFSG----TIPSTI 155
LE LYL N + NA L + N T
Sbjct: 124 LEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTF 183
Query: 156 ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200
+ R L + + N + E L L C+ LKV+DL N
Sbjct: 184 QSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTF 228
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 47.8 bits (114), Expect = 5e-06
Identities = 35/235 (14%), Positives = 79/235 (33%), Gaps = 41/235 (17%)
Query: 15 DMCQHLPRLQALDINNNHVTG----PVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTS 70
P+L + +++N P+ L + L + L +N L
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG-----PQAGAKI 142
Query: 71 ARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP----------RHSNLERLYLER 120
ARAL N + N L ++ N + H L + + +
Sbjct: 143 ARALQELAVNK------KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196
Query: 121 NNF-----SGTIPSFIFNASKLSILGIRTNSFSGT----IPSTIANLRNLQWLDLSFNYL 171
N + + +L +L ++ N+F+ + + + NL+ L L+ L
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256
Query: 172 TSSTSELSFLSSLRNCRN--LKVIDLTGNQLHG----ILPSSMGNLSTSLEYIYM 220
++ + + + + N L+ + L N++ L + + L ++ +
Sbjct: 257 SARGAA-AVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLEL 310
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 46.2 bits (110), Expect = 1e-05
Identities = 50/303 (16%), Positives = 96/303 (31%), Gaps = 64/303 (21%)
Query: 159 RNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYI 218
+++ L + +T+ + S + L ++K I L+GN I + LS ++
Sbjct: 4 FSIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNT---IGTEAARWLSENIA-- 57
Query: 219 YMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP 278
+L + ++ IP +L +
Sbjct: 58 -------------SKKDLEIAEFSDIFTGRVKDEIPEALR-----------------LLL 87
Query: 279 DSLCNLGRLVELQFYDNKL----FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334
+L +L ++ DN + + K +PL +L LH+N L P +
Sbjct: 88 QALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLG---PQAGAKIAR 144
Query: 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD----SIPTVIGGLSNLAFFSLAY 390
L + + PL I RN L + L +
Sbjct: 145 ALQELAVNKKAKNAPPLRS--------IICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQ 196
Query: 391 NKL-----QGSIPESLGDLRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLSFNRL 441
N + + + E L + L+ LDL +N+F+ + + + L L L+ L
Sbjct: 197 NGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLL 256
Query: 442 KGE 444
Sbjct: 257 SAR 259
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386 | Back alignment and structure |
|---|
Score = 42.4 bits (100), Expect = 3e-04
Identities = 56/378 (14%), Positives = 112/378 (29%), Gaps = 95/378 (25%)
Query: 70 SARALLLGNNNL----IGEIPHEIGNLHNLEYLVLENNNFDGP----------RHSNLER 115
S L + + + + +++ +VL N +LE
Sbjct: 5 SIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEI 64
Query: 116 LYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSST 175
+ F+G + I A + + + L + LS N +
Sbjct: 65 AEF-SDIFTGRVKDEIPEALR-------------LLLQALLKCPKLHTVRLSDNAFGPTA 110
Query: 176 SELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235
E + L L+ + L N G+ P + ++ +L + + ++ N
Sbjct: 111 QE-PLIDFLSKHTPLEHLYLHNN---GLGPQAGAKIARAL---------QELAVNKKAKN 157
Query: 236 LINLITMSLGINKLT--GSIPIS--LGKLQKLQGLYLYKNKL-----EGSIPDSLCNLGR 286
L ++ G N+L + + L + + +N + E + + L
Sbjct: 158 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQE 217
Query: 287 LVELQFYDNKLFG-----SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFS 341
L L DN F ++ + LR L L+ +L+ ++ D
Sbjct: 218 LKVLDLQDNT-FTHLGSSALAIALKSWPNLRELGLNDCLLS---ARGAAAVVDAF----- 268
Query: 342 SNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL 401
S N L + L N + + L +
Sbjct: 269 SKLENIGL----------QTLRLQYNEIELD------AVRTLK--------------TVI 298
Query: 402 GD-LRSLEFLDLSNNSFS 418
+ + L FL+L+ N FS
Sbjct: 299 DEKMPDLLFLELNGNRFS 316
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.3 bits (121), Expect = 9e-07
Identities = 66/408 (16%), Positives = 122/408 (29%), Gaps = 82/408 (20%)
Query: 92 LHNLEYLVLENNNFDG----------PRHSNLERLYLERNNFSGTIPSFIFNA-----SK 136
L + + L++ + L L L N + K
Sbjct: 27 LQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTPSCK 86
Query: 137 LSILGIRTNSFSGT----IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKV 192
+ L ++ +G + ST+ L LQ L LS N L + +L L L+
Sbjct: 87 IQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEK 146
Query: 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS 252
+ L + +S L++ L + +++ N + +
Sbjct: 147 LQLEYCS---LSAASCEPLASVLR------------------AKPDFKELTVSNNDINEA 185
Query: 253 IPISLGKLQK-----LQGLYLYKNKLE----GSIPDSLCNLGRLVELQFYDNKL--FGSI 301
L + K L+ L L + + + + L EL NKL G
Sbjct: 186 GVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMA 245
Query: 302 PACIGKLSP---LRNLLLHSNVLTYV----IPSTFLSLRDILVFNFSSNSLNGS------ 348
C G L P LR L + +T + + + + + N L
Sbjct: 246 ELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLC 305
Query: 349 --LPLDIGNLKVVVGIDLSRNNLSD----SIPTVIGGLSNLAFFSLAYNKLQGSIPESLG 402
L L+ + + + + +V+ L ++ N+L+ + L
Sbjct: 306 ETLLEPGCQLES---LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362
Query: 403 DL-----RSLEFLDLSNNSFS----GFIPRSFEKLLYLEYLNLSFNRL 441
L L L++ S + + L L+LS N L
Sbjct: 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCL 410
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461 | Back alignment and structure |
|---|
Score = 50.0 bits (120), Expect = 1e-06
Identities = 78/461 (16%), Positives = 149/461 (32%), Gaps = 82/461 (17%)
Query: 45 QELIAISLSHNQLTGL-IPRDIGNLTSARALLLGNNNL----IGEIPHEIGNLHNLEYLV 99
++ ++ + +L+ + L + + L + L +I + L L
Sbjct: 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62
Query: 100 LENNNFDGP-----------RHSNLERLYLERNNFSGT----IPSFIFNASKLSILGIRT 144
L +N +++L L+ +G + S + L L +
Sbjct: 63 LRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSD 122
Query: 145 NSFSGTIPSTIANLR-----NLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199
N + L+ L L + L++++ E S LR + K + ++ N
Sbjct: 123 NLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCE-PLASVLRAKPDFKELTVSNND 181
Query: 200 LHG----ILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI----NLITMSLGINKLT- 250
++ +L + + LE + + C + ++ ++ +L ++LG NKL
Sbjct: 182 INEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241
Query: 251 -GSIPISLGKLQ---KLQGLYLYKNKLE----GSIPDSLCNLGRLVELQFYDNKLFGS-- 300
G + G L +L+ L++++ + G + L L EL N+L
Sbjct: 242 VGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301
Query: 301 ---IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLK 357
+ L +L + S T + +L N L
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFT---AACCSHFSSVLAQNRFLLEL------------ 346
Query: 358 VVVGIDLSRNNLSDSIPTVIG-----GLSNLAFFSLAYNKLQ----GSIPESLGDLRSLE 408
+S N L D+ + S L LA + S+ +L SL
Sbjct: 347 -----QISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLR 401
Query: 409 FLDLSNNSFSGFIPRSFEKLL-----YLEYLNLSFNRLKGE 444
LDLSNN + + LE L L E
Sbjct: 402 ELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEE 442
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 48.0 bits (115), Expect = 1e-06
Identities = 29/87 (33%), Positives = 41/87 (47%), Gaps = 3/87 (3%)
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGFI 421
+L N L V L+ L SL+ N++Q S+P+ + D L L L L N
Sbjct: 34 ELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQSLP 92
Query: 422 PRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+KL L+ L L N+LK +P G
Sbjct: 93 NGVFDKLTQLKELALDTNQLKS-VPDG 118
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 43.8 bits (104), Expect = 3e-05
Identities = 33/87 (37%), Positives = 52/87 (59%), Gaps = 6/87 (6%)
Query: 236 LINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFY 293
L L +SL N++ S+P + KL KL LYL++NKL+ S+P+ + L +L EL
Sbjct: 51 LTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQ-SLPNGVFDKLTQLKELALD 108
Query: 294 DNKLFGSIPACI-GKLSPLRNLLLHSN 319
N+L S+P I +L+ L+ + LH+N
Sbjct: 109 TNQL-KSVPDGIFDRLTSLQKIWLHTN 134
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.5 bits (98), Expect = 2e-04
Identities = 31/94 (32%), Positives = 44/94 (46%), Gaps = 10/94 (10%)
Query: 244 LGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP----DSLCNLGRLVELQFYDNKLFG 299
L NKL KL +L L L +N+++ S+P D L L L ++NKL
Sbjct: 35 LESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLT---ILYLHENKL-Q 89
Query: 300 SIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSL 332
S+P + KL+ L+ L L +N L V F L
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRL 123
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177 | Back alignment and structure |
|---|
Score = 41.1 bits (97), Expect = 2e-04
Identities = 28/109 (25%), Positives = 43/109 (39%), Gaps = 9/109 (8%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPR---NLWQCQELIAISLSHNQLT 58
+ +N L SLP + L +L L ++ N + L + L L N+L
Sbjct: 34 ELESNKLQ-SLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTIL---YLHENKLQ 89
Query: 59 GLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFD 106
L LT + L L N L +P I L +L+ + L N +D
Sbjct: 90 SLPNGVFDKLTQLKELALDTNQL-KSVPDGIFDRLTSLQKIWLHTNPWD 137
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 47.4 bits (113), Expect = 1e-06
Identities = 21/112 (18%), Positives = 37/112 (33%), Gaps = 10/112 (8%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLW-QCQELIAISLSHNQLTGLIPRDIGNLTSARALLL 76
+ ++ L ++N L + L +SL + L + ++ L + L L
Sbjct: 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLEL 78
Query: 77 GNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-------SNLERLYLERN 121
N + G + L NL +L L N L+ L L
Sbjct: 79 SENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 8e-06
Identities = 21/92 (22%), Positives = 36/92 (39%), Gaps = 5/92 (5%)
Query: 14 DDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARA 73
+ + L+ L + N + NL + +L + LS N++ G + L +
Sbjct: 42 EGLTAEFVNLEFLSLINVGLI--SVSNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99
Query: 74 LLLGNNNL--IGEIPHEIGNLHNLEYLVLENN 103
L L N L I + + L L+ L L N
Sbjct: 100 LNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 44.7 bits (106), Expect = 1e-05
Identities = 33/126 (26%), Positives = 46/126 (36%), Gaps = 24/126 (19%)
Query: 75 LLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
L + G+I NLE+L L N SNL +L
Sbjct: 31 LDNCKSNDGKIEGLTAEFVNLEFLSLINVGLI--SVSNLPKLP----------------- 71
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
KL L + N G + L NL L+LS N L ++S L L+ LK +D
Sbjct: 72 -KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKL----KDISTLEPLKKLECLKSLD 126
Query: 195 LTGNQL 200
L ++
Sbjct: 127 LFNCEV 132
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168 | Back alignment and structure |
|---|
Score = 41.6 bits (98), Expect = 1e-04
Identities = 29/81 (35%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+D ++N I + NL F SL L S+ +L L L+ L+LS N G +
Sbjct: 31 LDNCKSNDG-KIEGLTAEFVNLEFLSLINVGLI-SV-SNLPKLPKLKKLELSENRIFGGL 87
Query: 422 PRSFEKLLYLEYLNLSFNRLK 442
EKL L +LNLS N+LK
Sbjct: 88 DMLAEKLPNLTHLNLSGNKLK 108
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 48.4 bits (114), Expect = 3e-06
Identities = 33/173 (19%), Positives = 59/173 (34%), Gaps = 22/173 (12%)
Query: 35 GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIG--NL 92
+ L L + + + + NL ++L + + L + +I +L
Sbjct: 162 VDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNL---KSLEIISGGLPDSVVEDILGSDL 218
Query: 93 HNLEYLVLENNNFDGPRHSNLERLY--LERNNFSGTIPSFIFNASKLSILGIRTNSFSGT 150
NLE LVL D ++ ++ F L LGI
Sbjct: 219 PNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFP-----------NLKWLGIVDAEEQNV 267
Query: 151 IPSTIAN---LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200
+ L L+ +D+S LT + L L + ++LK I++ N L
Sbjct: 268 VVEMFLESDILPQLETMDISAGVLTDEGARL-LLDHVDKIKHLKFINMKYNYL 319
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 44.6 bits (104), Expect = 5e-05
Identities = 26/184 (14%), Positives = 60/184 (32%), Gaps = 24/184 (13%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+DF ++ D+ L + L+ T + L ++ + L
Sbjct: 149 IDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDS 208
Query: 61 IPRDIG-----NLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLER 115
+ DI NL L +G + + + L F R NL+
Sbjct: 209 VVEDILGSDLPNLEKLV-LYVGVEDYGFDGD--MNVFRPL---------FSKDRFPNLKW 256
Query: 116 LYLERNNFSGTIPSFIFNA---SKLSILGIRTNSFSGT----IPSTIANLRNLQWLDLSF 168
L + + + +L + I + + + +++L+++++ +
Sbjct: 257 LGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKY 316
Query: 169 NYLT 172
NYL+
Sbjct: 317 NYLS 320
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362 | Back alignment and structure |
|---|
Score = 41.5 bits (96), Expect = 5e-04
Identities = 34/221 (15%), Positives = 68/221 (30%), Gaps = 23/221 (10%)
Query: 95 LEYLVLENNNFDGPRHSNLERLYLERNNFS----GTIPSFIFNASKLSILGIRTNSFSGT 150
+ +V F + E S + + L+ L I+ +
Sbjct: 128 ADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNLSI 187
Query: 151 IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSM-- 208
NL++L ++ L S E S L N L + + +
Sbjct: 188 GKKPRPNLKSL---EIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244
Query: 209 ---GNLSTSLEYIYMPYCRRSGRIPEEIGN---LINLITMSLGINKLTGS----IPISLG 258
+ +L+++ + + E L L TM + LT + +
Sbjct: 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVD 304
Query: 259 KLQKLQGLYLYKNKLEG----SIPDSLCNLGRLVELQFYDN 295
K++ L+ + + N L + SL + + Q YD+
Sbjct: 305 KIKHLKFINMKYNYLSDEMKKELQKSLPMKIDVSDSQEYDD 345
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.8 bits (109), Expect = 3e-06
Identities = 29/124 (23%), Positives = 45/124 (36%), Gaps = 24/124 (19%)
Query: 75 LLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNA 134
L + + G++ LE+L N +NL +L
Sbjct: 24 LDNSRSNEGKLEGLTDEFEELEFLSTINVGLT--SIANLPKL------------------ 63
Query: 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVID 194
+KL L + N SG + NL L+LS N + +LS + L+ NLK +D
Sbjct: 64 NKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKI----KDLSTIEPLKKLENLKSLD 119
Query: 195 LTGN 198
L
Sbjct: 120 LFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 45.1 bits (107), Expect = 6e-06
Identities = 22/112 (19%), Positives = 42/112 (37%), Gaps = 10/112 (8%)
Query: 18 QHLPRLQALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLL 76
+ ++ L ++N+ G + + +EL +S + LT + ++ L + L L
Sbjct: 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLEL 71
Query: 77 GNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRH-------SNLERLYLERN 121
+N + G + NL +L L N NL+ L L
Sbjct: 72 SDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149 | Back alignment and structure |
|---|
Score = 40.0 bits (94), Expect = 4e-04
Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 3/81 (3%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI 421
+D SR+N + + L F S L SI +L L L+ L+LS+N SG +
Sbjct: 24 LDNSRSNEG-KLEGLTDEFEELEFLSTINVGLT-SI-ANLPKLNKLKKLELSDNRVSGGL 80
Query: 422 PRSFEKLLYLEYLNLSFNRLK 442
EK L +LNLS N++K
Sbjct: 81 EVLAEKCPNLTHLNLSGNKIK 101
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 6e-06
Identities = 23/94 (24%), Positives = 38/94 (40%), Gaps = 5/94 (5%)
Query: 362 IDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSG 419
+ L+ N L + G L +L L N+L I + + ++ L L N
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKE 92
Query: 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFAN 453
+ F L L+ LNL N++ + G SF +
Sbjct: 93 ISNKMFLGLHQLKTLNLYDNQISC-VMPG-SFEH 124
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 39/149 (26%), Positives = 57/149 (38%), Gaps = 33/149 (22%)
Query: 295 NKLFGSIPACIGKLSPL--RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352
+ IP I PL LLL+ N L + +F
Sbjct: 17 GRGLKEIPRDI----PLHTTELLLNDNELG--------RISSDGLFG------------- 51
Query: 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLD 411
L +V ++L RN L+ P G S++ L NK++ I + L L+ L+
Sbjct: 52 --RLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLN 108
Query: 412 LSNNSFSGFIPR-SFEKLLYLEYLNLSFN 439
L +N S + SFE L L LNL+ N
Sbjct: 109 LYDNQISC-VMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 26/106 (24%), Positives = 44/106 (41%), Gaps = 8/106 (7%)
Query: 5 NNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPR---NLWQCQELIAISLSHNQLTGLI 61
+N L D + LP L L++ N +TG P QEL L N++ +
Sbjct: 38 DNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQEL---QLGENKIKEIS 94
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLENNNFD 106
+ L + L L +N + + +L++L L L +N F+
Sbjct: 95 NKMFLGLHQLKTLNLYDNQI-SCVMPGSFEHLNSLTSLNLASNPFN 139
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 43.1 bits (102), Expect = 6e-05
Identities = 31/109 (28%), Positives = 49/109 (44%), Gaps = 11/109 (10%)
Query: 244 LGINKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIP----DSLCNLGRLVELQFYDNKLF 298
L N+L L G+L L L L +N+L I + ++ ELQ +NK+
Sbjct: 36 LNDNELGRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHI---QELQLGENKI- 90
Query: 299 GSIPACI-GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
I + L L+ L L+ N ++ V+P +F L + N +SN N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFN 139
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 42.7 bits (101), Expect = 7e-05
Identities = 29/108 (26%), Positives = 48/108 (44%), Gaps = 13/108 (12%)
Query: 24 QALDINNNHVTGPVPRNLW-QCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82
L +N+N + L+ + L+ + L NQLTG+ P + + L LG N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKI- 90
Query: 83 GEIPHEI-GNLHNLEYLVLENNN--------FDGPRHSNLERLYLERN 121
EI +++ LH L+ L L +N F+ ++L L L N
Sbjct: 91 KEISNKMFLGLHQLKTLNLYDNQISCVMPGSFE--HLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 40.4 bits (95), Expect = 4e-04
Identities = 25/88 (28%), Positives = 42/88 (47%), Gaps = 6/88 (6%)
Query: 235 NLINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPDSLCN-LGRLVELQF 292
L +L+ + L N+LT I + +Q L L +NK++ I + + L +L L
Sbjct: 52 RLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIK-EISNKMFLGLHQLKTLNL 109
Query: 293 YDNKLFGSIPACI-GKLSPLRNLLLHSN 319
YDN++ + L+ L +L L SN
Sbjct: 110 YDNQI-SCVMPGSFEHLNSLTSLNLASN 136
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192 | Back alignment and structure |
|---|
Score = 39.6 bits (93), Expect = 8e-04
Identities = 25/108 (23%), Positives = 41/108 (37%), Gaps = 7/108 (6%)
Query: 114 ERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172
L L N +F L L ++ N +G P+ ++Q L L N +
Sbjct: 32 TELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIK 91
Query: 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYM 220
S F LK ++L NQ+ ++P S +L SL + +
Sbjct: 92 -EISNKMF----LGLHQLKTLNLYDNQISCVMPGSFEHL-NSLTSLNL 133
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D Length = 170 | Back alignment and structure |
|---|
Score = 40.7 bits (96), Expect = 3e-04
Identities = 29/88 (32%), Positives = 43/88 (48%), Gaps = 6/88 (6%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGF 420
+D S +L+ S+PT I + L N++ + + D L L LDL NN +
Sbjct: 14 VDCSGKSLA-SVPTGI--PTTTQVLYLYDNQIT-KLEPGVFDRLTQLTRLDLDNNQLTVL 69
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+KL L L+L+ N+LK IP G
Sbjct: 70 PAGVFDKLTQLTQLSLNDNQLKS-IPRG 96
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} Length = 174 | Back alignment and structure |
|---|
Score = 40.3 bits (95), Expect = 4e-04
Identities = 23/88 (26%), Positives = 41/88 (46%), Gaps = 6/88 (6%)
Query: 362 IDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-LRSLEFLDLSNNSFSGF 420
++ L+ S+P I ++ L N++ + + D L +L+ L ++N +
Sbjct: 17 VNCQNIRLA-SVPAGI--PTDKQRLWLNNNQIT-KLEPGVFDHLVNLQQLYFNSNKLTAI 72
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSG 448
F+KL L L+L+ N LK IP G
Sbjct: 73 PTGVFDKLTQLTQLDLNDNHLKS-IPRG 99
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362 | Back alignment and structure |
|---|
Score = 40.5 bits (95), Expect = 8e-04
Identities = 21/130 (16%), Positives = 47/130 (36%), Gaps = 22/130 (16%)
Query: 94 NLEYLVLENNNFD-----------GPRHSNLERLYLERNNFSGT-----IPSFIFNASKL 137
N+ L L NN +++ L L N F + +
Sbjct: 168 NVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV 227
Query: 138 SILGIRTNSFSGT----IPSTIANLRNLQWLDLSFNYLTSSTSEL--SFLSSLRNCRNLK 191
L + N G + +L++LQ + L ++ + + + E + ++ N + +
Sbjct: 228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKII 287
Query: 192 VIDLTGNQLH 201
++D G ++H
Sbjct: 288 LVDKNGKEIH 297
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3rgz_A | 768 | Protein brassinosteroid insensitive 1; phytohormon | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 3t6q_A | 606 | CD180 antigen; protein-protein complex, leucine ri | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 1ziw_A | 680 | TOLL-like receptor 3; innate immunity, immune syst | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 3vq2_A | 606 | TLR4, TOLL-like receptor 4; leucine rich repeat MD | 100.0 | |
| 2z63_A | 570 | TOLL-like receptor 4, variable lymphocyte recepto; | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 3j0a_A | 844 | TOLL-like receptor 5; membrane protein, leucine-ri | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 2z81_A | 549 | CD282 antigen, TOLL-like receptor 2, variable lymp | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4eco_A | 636 | Uncharacterized protein; leucine-rich repeats, pro | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 2z7x_B | 520 | TOLL-like receptor 1, variable lymphocyte recepto; | 100.0 | |
| 4ecn_A | 876 | Leucine-rich repeat protein; leucine-rich repeats, | 100.0 | |
| 4g8a_A | 635 | TOLL-like receptor 4; leucine rich repeat MD-2 rel | 100.0 | |
| 3a79_B | 562 | TLR6, VLRB.59, TOLL-like receptor 6, variable lymp | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 3v47_A | 455 | TOLL-like receptor 5B and variable lymphocyte REC | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 1jl5_A | 454 | Outer protein YOPM; leucine-rich repeat, molecular | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 1o6v_A | 466 | Internalin A; bacterial infection, extracellular r | 100.0 | |
| 2id5_A | 477 | Lingo-1, leucine rich repeat neuronal 6A; CNS-spec | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 3bz5_A | 457 | Internalin-J, INLJ; leucine rich repeat (LRR), cys | 100.0 | |
| 3o6n_A | 390 | APL1; leucine-rich repeat, protein binding; HET: N | 100.0 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 4fmz_A | 347 | Internalin; leucine rich repeat, structural genomi | 100.0 | |
| 3oja_B | 597 | Anopheles plasmodium-responsive leucine-rich REPE | 100.0 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 100.0 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.98 | |
| 1ogq_A | 313 | PGIP-2, polygalacturonase inhibiting protein; inhi | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1z7x_W | 461 | Ribonuclease inhibitor; leucine-rich repeat, enzym | 99.97 | |
| 1xku_A | 330 | Decorin; proteoglycan, leucine-rich repeat, struct | 99.97 | |
| 2ft3_A | 332 | Biglycan; proteoglycan, dimer interface, structura | 99.97 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.96 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.96 | |
| 2z66_A | 306 | Variable lymphocyte receptor B, TOLL-like recepto; | 99.96 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.96 | |
| 3ogk_B | 592 | Coronatine-insensitive protein 1; leucine rich rep | 99.96 | |
| 2z80_A | 353 | TOLL-like receptor 2, variable lymphocyte recepto; | 99.95 | |
| 3zyi_A | 452 | Leucine-rich repeat-containing protein 4; cell adh | 99.95 | |
| 3zyj_A | 440 | Leucine-rich repeat-containing protein 4C; cell ad | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.95 | |
| 1ozn_A | 285 | Reticulon 4 receptor; NOGO receptor, MAD, myelinat | 99.95 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.95 | |
| 4fcg_A | 328 | Uncharacterized protein; structural genomics, PSI- | 99.94 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.94 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.94 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.94 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.94 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.93 | |
| 3o53_A | 317 | Protein LRIM1, AGAP006348-PA; leucine-rich repeat, | 99.93 | |
| 2p1m_B | 594 | Transport inhibitor response 1 protein; F-BOX, leu | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 1wwl_A | 312 | Monocyte differentiation antigen CD14; LPS, immune | 99.93 | |
| 3oja_A | 487 | Leucine-rich immune molecule 1; coiled-coil, helix | 99.93 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.93 | |
| 2z62_A | 276 | TOLL-like receptor 4, variable lymphocyte recepto; | 99.92 | |
| 3g06_A | 622 | SSPH2 (leucine-rich repeat protein); E3 ubiquitin | 99.92 | |
| 2o6q_A | 270 | Variable lymphocyte receptor A; leucine-rich repea | 99.92 | |
| 1p9a_G | 290 | Platelet glycoprotein IB alpha chain precursor; pl | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.9 | |
| 3rfs_A | 272 | Internalin B, repeat modules, variable lymphocyte | 99.89 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 2xwt_C | 239 | Thyrotropin receptor; signaling protein-immune sys | 99.88 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.88 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.88 | |
| 3m19_A | 251 | Variable lymphocyte receptor A diversity region; a | 99.88 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 4glp_A | 310 | Monocyte differentiation antigen CD14; alpha beta | 99.87 | |
| 2ca6_A | 386 | RAN GTPase-activating protein 1; GAP, GTPase activ | 99.87 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.87 | |
| 3goz_A | 362 | Leucine-rich repeat-containing protein; LEGL7, NES | 99.87 | |
| 2ast_B | 336 | S-phase kinase-associated protein 2; SCF-substrate | 99.86 | |
| 1h6u_A | 308 | Internalin H; cell adhesion, leucine rich repeat, | 99.85 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.84 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.82 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.82 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.82 | |
| 2v9t_B | 220 | SLIT homolog 2 protein N-product; structural prote | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2v70_A | 220 | SLIT-2, SLIT homolog 2 protein N-product; neurogen | 99.81 | |
| 2o6s_A | 208 | Variable lymphocyte receptor B; leucine-rich repea | 99.81 | |
| 4ay9_X | 350 | Follicle-stimulating hormone receptor; hormone-rec | 99.81 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 3e6j_A | 229 | Variable lymphocyte receptor diversity region; var | 99.79 | |
| 2xot_A | 361 | Amphoterin-induced protein 1; cell adhesion, neuro | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.78 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.78 | |
| 1h6t_A | 291 | Internalin B; cell adhesion, leucine rich repeat, | 99.77 | |
| 3cvr_A | 571 | Invasion plasmid antigen; leucine rich repeat and | 99.76 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.75 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.74 | |
| 4ezg_A | 197 | Putative uncharacterized protein; internalin-A, le | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 1m9s_A | 605 | Internalin B; cell invasion, GW domains, SH3 domai | 99.73 | |
| 1w8a_A | 192 | SLIT protein; signaling protein, secreted protein, | 99.72 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.71 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.71 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.7 | |
| 1xeu_A | 263 | Internalin C; cellular invasion, leucine-rich repe | 99.7 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.69 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.69 | |
| 2wfh_A | 193 | SLIT homolog 2 protein C-product; developmental pr | 99.68 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.68 | |
| 3sb4_A | 329 | Hypothetical leucine rich repeat protein; LRR, rig | 99.67 | |
| 2ell_A | 168 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.67 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.66 | |
| 4fs7_A | 394 | Uncharacterized protein; leucine-rich repeats, pro | 99.65 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.65 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 99.65 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.64 | |
| 2je0_A | 149 | Acidic leucine-rich nuclear phosphoprotein 32 FAM | 99.63 | |
| 2o6r_A | 177 | Variable lymphocyte receptor B; leucine-rich repea | 99.62 | |
| 4fdw_A | 401 | Leucine rich hypothetical protein; putative cell s | 99.61 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.6 | |
| 4b8c_D | 727 | Glucose-repressible alcohol dehydrogenase transcr | 99.58 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.57 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.53 | |
| 1a9n_A | 176 | U2A', U2A'; complex (nuclear protein/RNA), RNA, sn | 99.53 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.49 | |
| 3g39_A | 170 | Variable lymphocyte receptor VLRB.2D; antibody, X- | 99.48 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.46 | |
| 4gt6_A | 394 | Cell surface protein; leucine rich repeats, putati | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.46 | |
| 2r9u_A | 174 | Variable lymphocyte receptor; adaptive immunity, V | 99.45 | |
| 1ds9_A | 198 | Outer arm dynein; leucine-rich repeat, beta-BETA-a | 99.43 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.34 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.33 | |
| 3un9_A | 372 | NLR family member X1; leucine rich repeat (LRR), a | 99.3 | |
| 2ifg_A | 347 | High affinity nerve growth factor receptor; TRK, T | 99.29 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.27 | |
| 4h09_A | 379 | Hypothetical leucine rich repeat protein; two LRR_ | 99.25 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.94 | |
| 2ra8_A | 362 | Uncharacterized protein Q64V53_bacfr; WGR domain, | 98.86 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.66 | |
| 1io0_A | 185 | Tropomodulin; LRR protein, right-handed super-heli | 98.53 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.42 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.33 | |
| 3rw6_A | 267 | Nuclear RNA export factor 1; retroviral constituti | 98.29 | |
| 3e4g_A | 176 | ATP synthase subunit S, mitochondrial; leucine-ric | 98.25 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 97.85 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.72 | |
| 1pgv_A | 197 | TMD-1, tropomodulin TMD-1; structural genomics, PS | 97.19 | |
| 3rfe_A | 130 | Platelet glycoprotein IB beta chain; platelet surf | 96.7 | |
| 2lz0_A | 100 | Uncharacterized protein; hypothetical leucine rich | 84.31 |
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.1e-59 Score=495.08 Aligned_cols=483 Identities=33% Similarity=0.533 Sum_probs=383.9
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|.+++.+|. ..+++|++|++++|.+.+.+|. +..+++|++|++++|++++..|..++++++|++|++++|+
T Consensus 183 L~Ls~n~l~~~~~~---~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~Ls~n~ 258 (768)
T 3rgz_A 183 LAISGNKISGDVDV---SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQ 258 (768)
T ss_dssp EECCSSEEESCCBC---TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEECCSSC
T ss_pred EECCCCcccccCCc---ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEECCCCc
Confidence 46677777766653 5677777777777777766665 7777777777777777777777777777777777777777
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccCh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~ 153 (508)
+.+..|.. .+++|++|++++|.+.+. .+++|++|++++|.+++..|..+.++++|++|++++|.+.+.+|.
T Consensus 259 l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~ 336 (768)
T 3rgz_A 259 FVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPM 336 (768)
T ss_dssp CEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCH
T ss_pred ccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCH
Confidence 76655543 677777777777766522 136777777777777777777777777777777777777666665
Q ss_pred h-hcCCCCCCEEeCCCCcCcC-CCCCCcc-------------------cccccC--CCCCCEEEccCccCccCCChhhhh
Q 045861 154 T-IANLRNLQWLDLSFNYLTS-STSELSF-------------------LSSLRN--CRNLKVIDLTGNQLHGILPSSMGN 210 (508)
Q Consensus 154 ~-~~~l~~L~~L~l~~n~~~~-~~~~~~~-------------------~~~l~~--~~~L~~L~l~~~~~~~~~~~~~~~ 210 (508)
. +..+++|++|++++|.+.+ ++..+.. ...+.. +++|+.|++++|.+++..|..+..
T Consensus 337 ~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~ 416 (768)
T 3rgz_A 337 DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSN 416 (768)
T ss_dssp HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGG
T ss_pred HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhc
Confidence 4 6677777777777776552 2211100 011222 567888888888888888888877
Q ss_pred cccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE
Q 045861 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290 (508)
Q Consensus 211 ~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 290 (508)
.+ +|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 417 l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L 495 (768)
T 3rgz_A 417 CS-ELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWI 495 (768)
T ss_dssp CT-TCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEE
T ss_pred CC-CCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEE
Confidence 76 89999999999888888889999999999999999988888889999999999999999988888889999999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccc-----------------
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDI----------------- 353 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~----------------- 353 (508)
++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+.+|..+
T Consensus 496 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~ 575 (768)
T 3rgz_A 496 SLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRY 575 (768)
T ss_dssp ECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEE
T ss_pred EccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccc
Confidence 999999988889999999999999999999998888889999999999999998876666433
Q ss_pred -----------------------------------------------------cCCCCCcEEECCCCcCCCccchhhhcC
Q 045861 354 -----------------------------------------------------GNLKVVVGIDLSRNNLSDSIPTVIGGL 380 (508)
Q Consensus 354 -----------------------------------------------------~~l~~L~~L~l~~n~l~~~~~~~~~~l 380 (508)
..++.|+.|++++|++++.+|..++.+
T Consensus 576 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l 655 (768)
T 3rgz_A 576 VYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSM 655 (768)
T ss_dssp EEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGC
T ss_pred cccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhcc
Confidence 335678999999999999999999999
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCccccc
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFM 460 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~ 460 (508)
++|+.|+|++|.+++.+|..++.+++|++|||++|++++.+|..+..+++|++|++++|+++|.+|...++.++...++.
T Consensus 656 ~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~ 735 (768)
T 3rgz_A 656 PYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFL 735 (768)
T ss_dssp TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGC
T ss_pred ccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccc
Q 045861 461 GNSFLCGSPNLQVPPRKDIKTSPHRKSRKNTRS 493 (508)
Q Consensus 461 ~n~~~c~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (508)
|||.+|+.|. ++|.......+.++.++++.
T Consensus 736 gN~~Lcg~~l---~~C~~~~~~~~~~~~~~~~~ 765 (768)
T 3rgz_A 736 NNPGLCGYPL---PRCDPSNADGYAHHQRSHHH 765 (768)
T ss_dssp SCTEEESTTS---CCCCSCC-------------
T ss_pred CCchhcCCCC---cCCCCCccCCCCCCCCcccc
Confidence 9999999874 37988888888877776554
|
| >3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.5e-55 Score=464.13 Aligned_cols=457 Identities=32% Similarity=0.528 Sum_probs=381.0
Q ss_pred CeecCCCCCCCCchhh--hhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccC
Q 045861 1 MDFANNTLTGSLPDDM--CQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGN 78 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~--~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 78 (508)
|++++|.+++..|..+ +.++++|++|++++|.+.+..+ +..+++|++|++++|++++..|. ++++++|++|++++
T Consensus 156 L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~ 232 (768)
T 3rgz_A 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISG 232 (768)
T ss_dssp EECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCS
T ss_pred EECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcC
Confidence 3556666665555442 4667777777777777765443 36789999999999999877776 99999999999999
Q ss_pred CccccCCchhccCCCCCCEeeCccccCCCC----CCCCCCEEEccCCcccccCCccccCC-CCCcEEEccCcccccccCh
Q 045861 79 NNLIGEIPHEIGNLHNLEYLVLENNNFDGP----RHSNLERLYLERNNFSGTIPSFIFNA-SKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 79 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l-~~L~~L~l~~~~i~~~~~~ 153 (508)
|++.+..|..+.++++|++|++++|.+.+. .+++|++|++++|.+++.+|..+... ++|++|++++|.+++.+|.
T Consensus 233 n~l~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~ 312 (768)
T 3rgz_A 233 NKLSGDFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPP 312 (768)
T ss_dssp SCCCSCHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCG
T ss_pred CcCCCcccHHHhcCCCCCEEECCCCcccCccCccccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccch
Confidence 999988899999999999999999987643 67899999999999998999988875 9999999999999999999
Q ss_pred hhcCCCCCCEEeCCCCcCcC-CCCCCcccccccCCCCCCEEEccCccCccCCChhhhhccc-------------------
Q 045861 154 TIANLRNLQWLDLSFNYLTS-STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLST------------------- 213 (508)
Q Consensus 154 ~~~~l~~L~~L~l~~n~~~~-~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~------------------- 213 (508)
.|+.+++|++|++++|.+.+ ++. ..+..+++|++|++++|.+++..|..+....+
T Consensus 313 ~~~~l~~L~~L~L~~n~l~~~ip~-----~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~ 387 (768)
T 3rgz_A 313 FFGSCSLLESLALSSNNFSGELPM-----DTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPN 387 (768)
T ss_dssp GGGGCTTCCEEECCSSEEEEECCH-----HHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTT
T ss_pred HHhcCCCccEEECCCCcccCcCCH-----HHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChh
Confidence 99999999999999998873 321 23667788888888888777666666655432
Q ss_pred -------ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCC
Q 045861 214 -------SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGR 286 (508)
Q Consensus 214 -------~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~ 286 (508)
+|++|++++|.+.+.+|..+..+++|++|++++|.+.+..|..++.+++|++|++++|.+.+..|..+..+++
T Consensus 388 ~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 467 (768)
T 3rgz_A 388 LCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKT 467 (768)
T ss_dssp TTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred hhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCC
Confidence 4566666666666667777788888888888888888778888888888888888888888888888888888
Q ss_pred CcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCC
Q 045861 287 LVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSR 366 (508)
Q Consensus 287 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (508)
|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|++|++++|++.+.+|..+..+++|+.|++++
T Consensus 468 L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~ 547 (768)
T 3rgz_A 468 LETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNT 547 (768)
T ss_dssp CCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCS
T ss_pred ceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCC
Confidence 88888888888888888888889999999999998888888888889999999999999888888899999999999999
Q ss_pred CcCCCccchhh---------------------------------------------------------------------
Q 045861 367 NNLSDSIPTVI--------------------------------------------------------------------- 377 (508)
Q Consensus 367 n~l~~~~~~~~--------------------------------------------------------------------- 377 (508)
|++.+.+|..+
T Consensus 548 N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~ 627 (768)
T 3rgz_A 548 NLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPT 627 (768)
T ss_dssp SEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCS
T ss_pred CccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchh
Confidence 98876666443
Q ss_pred -hcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCC
Q 045861 378 -GGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFS 455 (508)
Q Consensus 378 -~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~ 455 (508)
..+++|++|++++|++++.+|..++.+++|+.|+|++|++++.+|..+.++++|+.|++++|++++.+|.. ..+.+|+
T Consensus 628 ~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~ 707 (768)
T 3rgz_A 628 FDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLT 707 (768)
T ss_dssp CSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCS
T ss_pred hhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCC
Confidence 23467899999999999999999999999999999999999999999999999999999999999999986 4678899
Q ss_pred cccccCCCCC
Q 045861 456 DNSFMGNSFL 465 (508)
Q Consensus 456 ~l~l~~n~~~ 465 (508)
.+++++|+..
T Consensus 708 ~L~ls~N~l~ 717 (768)
T 3rgz_A 708 EIDLSNNNLS 717 (768)
T ss_dssp EEECCSSEEE
T ss_pred EEECcCCccc
Confidence 9999999654
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-54 Score=451.82 Aligned_cols=462 Identities=19% Similarity=0.224 Sum_probs=354.1
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|.++ .++...|.++++|++|++++|.+.+..|..|.++++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 38 L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 116 (606)
T 3t6q_A 38 LEFSFNVLP-TIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTG 116 (606)
T ss_dssp EECTTCCCS-EECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECTTSC
T ss_pred EEccCCccC-cCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeeccccC
Confidence 456666666 3333333666666666666666665556666666666666666666666666666666666666666666
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCc--EEEccCcccccccC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLS--ILGIRTNSFSGTIP 152 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~--~L~l~~~~i~~~~~ 152 (508)
+.+..+..+.++++|++|++++|.+..+ .+++|++|++++|.+++..+..+..+++|+ .|++++|.+.+..+
T Consensus 117 i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l~~~~~ 196 (606)
T 3t6q_A 117 ISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIAGIEP 196 (606)
T ss_dssp CSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCCCEECT
T ss_pred cccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCccCccCh
Confidence 6654455666666666666666666543 345666666666666655556666666666 66666666665554
Q ss_pred hhhcCC---------------------------------------------------CCCCEEeCCCCcCcCCCCCCccc
Q 045861 153 STIANL---------------------------------------------------RNLQWLDLSFNYLTSSTSELSFL 181 (508)
Q Consensus 153 ~~~~~l---------------------------------------------------~~L~~L~l~~n~~~~~~~~~~~~ 181 (508)
..+... .+|+.+++++|.+..++.
T Consensus 197 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~~~~----- 271 (606)
T 3t6q_A 197 GAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFNISS----- 271 (606)
T ss_dssp TTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSSCCT-----
T ss_pred hHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCccCH-----
Confidence 443221 034444444444443322
Q ss_pred ccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC-ccccCC
Q 045861 182 SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP-ISLGKL 260 (508)
Q Consensus 182 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~ 260 (508)
..|..+++|+.|++++|.++ .+|..+...+ +|++|++++|.+.+..|..+..+++|++|++++|.+.+..+ ..+..+
T Consensus 272 ~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 349 (606)
T 3t6q_A 272 NTFHCFSGLQELDLTATHLS-ELPSGLVGLS-TLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENL 349 (606)
T ss_dssp TTTTTCTTCSEEECTTSCCS-CCCSSCCSCT-TCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSSCCBCCSSTTTTC
T ss_pred HHhccccCCCEEeccCCccC-CCChhhcccc-cCCEEECccCCcCcCchhhhhccCcCCEEECCCCCcccccchhhhhcc
Confidence 33677888999999998887 5566666665 89999999998887778888889999999999998875544 448889
Q ss_pred CCCCcEEccCCcCcccc--chhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCc-cccCccCCcE
Q 045861 261 QKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPS-TFLSLRDILV 337 (508)
Q Consensus 261 ~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~ 337 (508)
++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+. .+..+++|++
T Consensus 350 ~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~ 429 (606)
T 3t6q_A 350 ENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLLKV 429 (606)
T ss_dssp TTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTTTTCTTCCE
T ss_pred CcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhhhCcccCCE
Confidence 99999999999988654 66788999999999999999888888999999999999999999877554 4889999999
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCcCCCc---cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS---IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
|++++|.+.+..+..+..+++|++|++++|++.+. .+..+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 430 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~ 509 (606)
T 3t6q_A 430 LNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSIDQHAFTSLKMMNHVDLSH 509 (606)
T ss_dssp EECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred EECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCccChhhhccccCCCEEECCC
Confidence 99999999988888899999999999999999863 235688999999999999999988899999999999999999
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
|++++..|+.+..++.| +|++++|++++..|.. ..+++++.+++++|||.|+|+..
T Consensus 510 N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 566 (606)
T 3t6q_A 510 NRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCSNI 566 (606)
T ss_dssp SCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGGGH
T ss_pred CccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCCcH
Confidence 99999999999999999 9999999999666654 45788999999999999999843
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-52 Score=436.23 Aligned_cols=231 Identities=23% Similarity=0.279 Sum_probs=166.5
Q ss_pred cEEEcccCccccccCccccCCCCCCcEEccCCcCccccc-hhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC
Q 045861 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP-DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318 (508)
Q Consensus 240 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (508)
+.|++++|.+.+..+..+..+++|++|++++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..+++|+.|++++
T Consensus 384 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~ 463 (680)
T 1ziw_A 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRR 463 (680)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTT
T ss_pred ceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhcc
Confidence 333333344444444455555666666666666554333 4555666666666666666555555566666666666666
Q ss_pred Cccc--ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccc--------hhhhcCCCCCEEEC
Q 045861 319 NVLT--YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP--------TVIGGLSNLAFFSL 388 (508)
Q Consensus 319 n~~~--~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~L 388 (508)
|.+. +..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+ ..+.++++|++|++
T Consensus 464 n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L 543 (680)
T 1ziw_A 464 VALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNL 543 (680)
T ss_dssp SCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEEC
T ss_pred ccccccccCCcccccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEEC
Confidence 6654 3455667788888888888888887777778888888888888888875422 23677889999999
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc--ccCCCCcccccCCCCCC
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE--SFANFSDNSFMGNSFLC 466 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~--~~~~l~~l~l~~n~~~c 466 (508)
++|.++...+..|.++++|+.|++++|++++..+..|.++++|+.|++++|++++..|... .+++++.+++++|||.|
T Consensus 544 ~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c 623 (680)
T 1ziw_A 544 ESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDC 623 (680)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCB
T ss_pred CCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCccc
Confidence 9998885545678899999999999999998777888899999999999999985444432 57899999999999999
Q ss_pred CCCC
Q 045861 467 GSPN 470 (508)
Q Consensus 467 ~~~~ 470 (508)
+|+.
T Consensus 624 ~c~~ 627 (680)
T 1ziw_A 624 TCES 627 (680)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9986
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-52 Score=434.31 Aligned_cols=457 Identities=21% Similarity=0.253 Sum_probs=349.0
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
++++++++ .+|..+ .+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|+++++|++|++++|++
T Consensus 17 ~c~~~~l~-~ip~~~---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 17 QCMDQKLS-KVPDDI---PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp ECTTSCCS-SCCTTS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EccCCCcc-cCCCCC---CCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 55666666 666655 36677777777777766666677777777777777777766666777777777777777777
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccc-cCCccccCCCCCcEEEccCcccccccChh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSG-TIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
.+..|..|+++++|++|++++|.+... .+++|++|++++|.+.+ .+|..+.++++|++|++++|.+++..+..
T Consensus 93 ~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~ 172 (606)
T 3vq2_A 93 QSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVND 172 (606)
T ss_dssp CCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTT
T ss_pred cccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhh
Confidence 666666777777777777777766543 45677777777777664 35666777777777777777776655555
Q ss_pred hcCCCCCC----EEeCCCCcCcCCCCCC----------------------------------------------------
Q 045861 155 IANLRNLQ----WLDLSFNYLTSSTSEL---------------------------------------------------- 178 (508)
Q Consensus 155 ~~~l~~L~----~L~l~~n~~~~~~~~~---------------------------------------------------- 178 (508)
|+.+.+|+ ++++++|.+..++...
T Consensus 173 ~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~ 252 (606)
T 3vq2_A 173 LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEP 252 (606)
T ss_dssp THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCG
T ss_pred hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccCh
Confidence 54444332 4555555544332211
Q ss_pred -----------------------cccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhc
Q 045861 179 -----------------------SFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235 (508)
Q Consensus 179 -----------------------~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~ 235 (508)
.....+..+++|+.++++++.+.. .+ .+.... +|++|++++|.+ +.+|. + .
T Consensus 253 ~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~~-l~-~l~~~~-~L~~L~l~~n~l-~~lp~-~-~ 326 (606)
T 3vq2_A 253 SIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKY-LE-DVPKHF-KWQSLSIIRCQL-KQFPT-L-D 326 (606)
T ss_dssp GGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCCC-CC-CCCTTC-CCSEEEEESCCC-SSCCC-C-C
T ss_pred HHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccchh-hh-hccccc-cCCEEEcccccC-ccccc-C-C
Confidence 000113445666667776666653 23 444443 788888888887 56663 4 8
Q ss_pred CCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccc--cchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCE
Q 045861 236 LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGS--IPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~--~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 313 (508)
+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.+ .+..+..+++|+.
T Consensus 327 l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~ 403 (606)
T 3vq2_A 327 LPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQH 403 (606)
T ss_dssp CSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCE
T ss_pred CCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCe
Confidence 888888888888554333 567889999999999998755 37889999999999999999875 5578899999999
Q ss_pred EEcCCCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCC-ccchhhhcCCCCCEEECcCC
Q 045861 314 LLLHSNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD-SIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 314 L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L~L~~n 391 (508)
|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|
T Consensus 404 L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n 483 (606)
T 3vq2_A 404 LDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKC 483 (606)
T ss_dssp EECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTS
T ss_pred eECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCC
Confidence 9999999998877 688999999999999999998899999999999999999999997 47888999999999999999
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccC-CCCcccccCCCCCCCCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFA-NFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~-~l~~l~l~~n~~~c~~~ 469 (508)
.+++..|..+..+++|++|++++|++++..|..+..+++|++|++++|+++ .+|.. ..++ +++.+++++|||.|+|+
T Consensus 484 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~ 562 (606)
T 3vq2_A 484 QLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICE 562 (606)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSST
T ss_pred cCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCc
Confidence 999888999999999999999999999988999999999999999999998 67765 3444 59999999999999999
Q ss_pred CCC
Q 045861 470 NLQ 472 (508)
Q Consensus 470 ~~~ 472 (508)
..+
T Consensus 563 ~~~ 565 (606)
T 3vq2_A 563 HQK 565 (606)
T ss_dssp THH
T ss_pred cHH
Confidence 643
|
| >3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-50 Score=419.08 Aligned_cols=458 Identities=20% Similarity=0.208 Sum_probs=387.0
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++.+++ ++|..+ .+++++|++++|.+++..+..|.++++|++|++++|++++..|.+|+++++|++|++++|+
T Consensus 17 ~~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 17 YNCENLGLN-EIPGTL---PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EECTTSCCS-SCCTTS---CTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred EECCCCCcc-cCcCCC---CCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 356778888 889776 4589999999999998888899999999999999999998989999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChh
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
+.+..|..|+++++|++|++++|.+... .+++|++|++++|.+.+.....+..+++|++|++++|.+++..+..
T Consensus 93 l~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 172 (606)
T 3t6q_A 93 LIFMAETALSGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKED 172 (606)
T ss_dssp CSEECTTTTSSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHH
T ss_pred ccccChhhhcccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhh
Confidence 9988899999999999999999998874 6789999999999998655455566999999999999999888888
Q ss_pred hcCCCCCC--EEeCCCCcCcCCCCCCccc--------------------------------------------ccccCC-
Q 045861 155 IANLRNLQ--WLDLSFNYLTSSTSELSFL--------------------------------------------SSLRNC- 187 (508)
Q Consensus 155 ~~~l~~L~--~L~l~~n~~~~~~~~~~~~--------------------------------------------~~l~~~- 187 (508)
|+.+++|+ +|++++|.+...+...-.. ..+..+
T Consensus 173 ~~~l~~L~~l~L~l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~ 252 (606)
T 3t6q_A 173 MSSLQQATNLSLNLNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252 (606)
T ss_dssp HHTTTTCCSEEEECTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGG
T ss_pred hhhhcccceeEEecCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhh
Confidence 99999999 8999999887754321100 001111
Q ss_pred -CCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcE
Q 045861 188 -RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266 (508)
Q Consensus 188 -~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 266 (508)
.+|+.++++++.+++..+..+..++ +|++|++++|.+. .+|..+..+++|++|++++|.+.+..+..+..+++|++|
T Consensus 253 ~~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 330 (606)
T 3t6q_A 253 EMSVESINLQKHYFFNISSNTFHCFS-GLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHL 330 (606)
T ss_dssp GSEEEEEECTTCCCSSCCTTTTTTCT-TCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEE
T ss_pred cCceeEEEeecCccCccCHHHhcccc-CCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEE
Confidence 1578888888888877777777776 9999999999877 677778889999999999999987778888899999999
Q ss_pred EccCCcCccccch-hhhCCCCCcEEEeeCceeeeeC--CcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 267 YLYKNKLEGSIPD-SLCNLGRLVELQFYDNKLFGSI--PACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 267 ~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
++++|.+.+..+. .+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+..+..+++|++|++++|
T Consensus 331 ~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n 410 (606)
T 3t6q_A 331 SIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFT 410 (606)
T ss_dssp ECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTC
T ss_pred ECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCC
Confidence 9999988755544 4888999999999999887665 677888999999999999998888888999999999999999
Q ss_pred ccccccCc-cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccccc---CcccccCCCCCCEEECCCCcccc
Q 045861 344 SLNGSLPL-DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS---IPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 344 ~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~---~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
++.+..+. .+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+..+++|++|++++|++++
T Consensus 411 ~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~ 490 (606)
T 3t6q_A 411 RLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSS 490 (606)
T ss_dssp CEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCE
T ss_pred cCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCc
Confidence 99866554 478899999999999999888888889999999999999998752 23568888999999999999998
Q ss_pred cCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCC
Q 045861 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFL 465 (508)
Q Consensus 420 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~ 465 (508)
..|..|..+++|++|++++|++++..|.. ..+..+ .+++++|...
T Consensus 491 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~ 536 (606)
T 3t6q_A 491 IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHIS 536 (606)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCC
T ss_pred cChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCccc
Confidence 88889999999999999999998776654 346667 7888888544
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-49 Score=411.52 Aligned_cols=452 Identities=20% Similarity=0.267 Sum_probs=370.5
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
+.++.+++ ++|..+ .+++++|++++|.+++..+..|..+++|++|++++|++++..+..|+++++|++|++++|++
T Consensus 13 ~c~~~~l~-~ip~~l---~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l 88 (570)
T 2z63_A 13 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88 (570)
T ss_dssp ECCSSCCS-SCCSSS---CSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred EeCCCCcc-ccCCCc---cccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcC
Confidence 45667777 788655 45799999999999877777899999999999999999888888899999999999999998
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccc-cCCccccCCCCCcEEEccCcccccccChh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSG-TIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
.+..+..|.++++|++|++++|.+... .+++|++|++++|.+.+ .+|..+.++++|++|++++|++++..+..
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~ 168 (570)
T 2z63_A 89 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 168 (570)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGG
T ss_pred CccCHhhhcCccccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHH
Confidence 877778899999999999999987754 56789999999998876 46888999999999999999998777777
Q ss_pred hcCCCCC----CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCc--------------------------------
Q 045861 155 IANLRNL----QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN-------------------------------- 198 (508)
Q Consensus 155 ~~~l~~L----~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~-------------------------------- 198 (508)
++.+++| +.+++++|.+..++.. .+... +|+.++++++
T Consensus 169 ~~~l~~L~~~~~~L~l~~n~l~~~~~~-----~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~ 242 (570)
T 2z63_A 169 LRVLHQMPLLNLSLDLSLNPMNFIQPG-----AFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGN 242 (570)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTT-----TTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSS
T ss_pred ccchhccchhhhhcccCCCCceecCHH-----HhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchh
Confidence 8777777 7899999887765432 23222 4566655554
Q ss_pred --------------------------cCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc
Q 045861 199 --------------------------QLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS 252 (508)
Q Consensus 199 --------------------------~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 252 (508)
.+.+..+..+...+ +++.|+++++.+. .+|..+..+ +|++|++++|.+. .
T Consensus 243 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~-~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~ 318 (570)
T 2z63_A 243 LEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLT-NVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-Q 318 (570)
T ss_dssp CEECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGT-TCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-S
T ss_pred hhhcchhhhccccccchhhhhhhcchhhhhhchhhhcCcC-cccEEEecCccch-hhhhhhccC-CccEEeeccCccc-c
Confidence 22333444454444 7888888887766 466666667 8888888888777 3
Q ss_pred cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeC--CcccCCCCCCCEEEcCCCcccccCCcccc
Q 045861 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSI--PACIGKLSPLRNLLLHSNVLTYVIPSTFL 330 (508)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~--~~~~~~~~~L~~L~l~~n~~~~~~~~~~~ 330 (508)
+|. ..+++|++|++++|.+....+. ..+++|++|++++|.+.+.. +..+..+++|++|++++|.+....+. +.
T Consensus 319 l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~ 393 (570)
T 2z63_A 319 FPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FL 393 (570)
T ss_dssp CCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EE
T ss_pred cCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-cc
Confidence 443 4677888888888887655443 67899999999999887553 66788899999999999999877665 88
Q ss_pred CccCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccc-ccCcccccCCCCCC
Q 045861 331 SLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ-GSIPESLGDLRSLE 408 (508)
Q Consensus 331 ~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~ 408 (508)
.+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+.++++|++|++++|.++ +.+|..+..+++|+
T Consensus 394 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 394 GLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp TCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred ccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 99999999999999987655 56889999999999999999888899999999999999999997 57889999999999
Q ss_pred EEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCCCC
Q 045861 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNLQ 472 (508)
Q Consensus 409 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~~ 472 (508)
+|++++|++++..|..+..+++|++|++++|++++..|.. ..+++|+.+++++||+.|+||..+
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~ 538 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 538 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchH
Confidence 9999999999988999999999999999999999665543 467889999999999999999753
|
| >1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-48 Score=411.87 Aligned_cols=455 Identities=22% Similarity=0.275 Sum_probs=281.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..|..|..+++|++|++++|+++...+..|+++++|++|++++|+
T Consensus 30 L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~ 108 (680)
T 1ziw_A 30 LNLTHNQLR-RLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNS 108 (680)
T ss_dssp EECCSSCCC-CCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSC
T ss_pred EECCCCCCC-CcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCc
Confidence 356666666 3444444666666666666666665555556666666666666666665444456666666666666666
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccccCCcccc--CCCCCcEEEccCcccccccC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSGTIPSFIF--NASKLSILGIRTNSFSGTIP 152 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~--~l~~L~~L~l~~~~i~~~~~ 152 (508)
+.+..+..|+++++|++|++++|.+... .+++|++|++++|.+++..+..+. .+++|++|++++|.+++..+
T Consensus 109 l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~ 188 (680)
T 1ziw_A 109 IQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188 (680)
T ss_dssp CCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCT
T ss_pred cCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccCh
Confidence 6544445566666666666666655443 344555555555555433333222 23445555555544443333
Q ss_pred hh---------------------------------------------------hcCCCC--CCEEeCCCCcCcCCCCCCc
Q 045861 153 ST---------------------------------------------------IANLRN--LQWLDLSFNYLTSSTSELS 179 (508)
Q Consensus 153 ~~---------------------------------------------------~~~l~~--L~~L~l~~n~~~~~~~~~~ 179 (508)
.. |..++. |++|++++|.+.....
T Consensus 189 ~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~--- 265 (680)
T 1ziw_A 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGN--- 265 (680)
T ss_dssp TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECT---
T ss_pred hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCc---
Confidence 33 332222 4444444444433221
Q ss_pred ccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcc-----cCCh----hhhcCCCCcEEEcccCccc
Q 045861 180 FLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSG-----RIPE----EIGNLINLITMSLGINKLT 250 (508)
Q Consensus 180 ~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~-----~~~~----~l~~l~~L~~L~l~~~~~~ 250 (508)
..+..+++|+.|++++|.+.+..+..+.... +|++|+++++...+ .+|. .+..+++|++|++++|.+.
T Consensus 266 --~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~ 342 (680)
T 1ziw_A 266 --DSFAWLPQLEYFFLEYNNIQHLFSHSLHGLF-NVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP 342 (680)
T ss_dssp --TTTTTCTTCCEEECCSCCBSEECTTTTTTCT-TCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred --ccccCcccccEeeCCCCccCccChhhhcCCC-CccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence 2344555555555555555544444444333 44444444332211 1111 3444555666666666655
Q ss_pred cccCccccCCCCCCcEEccC----------------------------CcCccccchhhhCCCCCcEEEeeCceeeeeCC
Q 045861 251 GSIPISLGKLQKLQGLYLYK----------------------------NKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP 302 (508)
Q Consensus 251 ~~~~~~l~~~~~L~~L~l~~----------------------------n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 302 (508)
+..+..+.++++|++|++++ |.+.+..+..|..+++|++|++++|.+.+.++
T Consensus 343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~ 422 (680)
T 1ziw_A 343 GIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELT 422 (680)
T ss_dssp CCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECC
T ss_pred CCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccC
Confidence 55555555555555555444 33443445556666677777777776655444
Q ss_pred -cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccc--cccCccccCCCCCcEEECCCCcCCCccchhhhc
Q 045861 303 -ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN--GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGG 379 (508)
Q Consensus 303 -~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 379 (508)
..+..+++|++|++++|.+....+..|..+++|++|++++|.+. +..|..+..+++|+.|++++|++++..+..|.+
T Consensus 423 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~ 502 (680)
T 1ziw_A 423 GQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEG 502 (680)
T ss_dssp SGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred cccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcc
Confidence 45666777777777777776666667777777777777777765 356777888899999999999999777778899
Q ss_pred CCCCCEEECcCCcccccCc--------ccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc--c
Q 045861 380 LSNLAFFSLAYNKLQGSIP--------ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--E 449 (508)
Q Consensus 380 l~~L~~L~L~~n~l~~~~~--------~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~ 449 (508)
+++|++|++++|.+++..+ ..+.++++|++|++++|+++...++.|.++++|+.|++++|+++ .+|.. .
T Consensus 503 l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~ 581 (680)
T 1ziw_A 503 LEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLN-TLPASVFN 581 (680)
T ss_dssp CTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTT
T ss_pred ccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCC-cCCHhHhC
Confidence 9999999999999885422 23778899999999999999766678999999999999999998 55554 3
Q ss_pred ccCCCCcccccCCC
Q 045861 450 SFANFSDNSFMGNS 463 (508)
Q Consensus 450 ~~~~l~~l~l~~n~ 463 (508)
.+.+|+.+++++|.
T Consensus 582 ~l~~L~~L~L~~N~ 595 (680)
T 1ziw_A 582 NQVSLKSLNLQKNL 595 (680)
T ss_dssp TCTTCCEEECTTSC
T ss_pred CCCCCCEEECCCCc
Confidence 57889999999984
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-50 Score=430.55 Aligned_cols=460 Identities=20% Similarity=0.199 Sum_probs=284.0
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCC-CCCCcccCCCCCCCeEEccCCc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLT-GLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|+++++++ .+|. + .+++++|++++|.+++..+..|..+++|++|++++|... .+.|.+|+++++|++|+|++|.
T Consensus 10 dcs~~~L~-~vP~-l---p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 10 FYRFCNLT-QVPQ-V---LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EESCCCSS-CCCS-S---CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EccCCCCC-CCCC-C---CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 45666666 5664 2 456777777777766666666677777777777766333 2335666777777777777776
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC--------CCCCCCEEEccCCcccccCC-ccccCCCCCcEEEccCccccccc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP--------RHSNLERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGTI 151 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~--------~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~ 151 (508)
+.+..|..|.++++|++|++++|.+.+. .+++|++|++++|.+.+..+ ..+.++++|++|++++|.+++..
T Consensus 85 l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~ 164 (844)
T 3j0a_A 85 IYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVC 164 (844)
T ss_dssp CCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCC
T ss_pred CcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeC
Confidence 6666666677777777777777666531 45567777777776664433 45666777777777777666655
Q ss_pred ChhhcCC--CCCCEEeCCCCcCcCCCC-CCcccc-cccCCCCCCEEEccCccCccCCChhhhhc----------------
Q 045861 152 PSTIANL--RNLQWLDLSFNYLTSSTS-ELSFLS-SLRNCRNLKVIDLTGNQLHGILPSSMGNL---------------- 211 (508)
Q Consensus 152 ~~~~~~l--~~L~~L~l~~n~~~~~~~-~~~~~~-~l~~~~~L~~L~l~~~~~~~~~~~~~~~~---------------- 211 (508)
+..+..+ ++|+.|++++|.+..... .+.... .+.. ..|+.|++++|.+.+..+..+...
T Consensus 165 ~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~ 243 (844)
T 3j0a_A 165 EHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRN-MVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM 243 (844)
T ss_dssp SGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTT-CCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred HHHcccccCCccceEECCCCccccccccchhhcCCcccc-CceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence 6555544 556666666655544111 000000 0111 125555555554433322222110
Q ss_pred ---------------------ccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccC
Q 045861 212 ---------------------STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYK 270 (508)
Q Consensus 212 ---------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~ 270 (508)
.++++.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+.++++|++|++++
T Consensus 244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~ 323 (844)
T 3j0a_A 244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSY 323 (844)
T ss_dssp BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEES
T ss_pred cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCC
Confidence 12455555555555555555555555555555555555554455555555555555555
Q ss_pred CcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC------------------------
Q 045861 271 NKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP------------------------ 326 (508)
Q Consensus 271 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~------------------------ 326 (508)
|.+.+..+..|..+++|++|++++|.+....+..+..+++|+.|++++|.++....
T Consensus 324 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~~~~~~l 403 (844)
T 3j0a_A 324 NLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLPKINLTA 403 (844)
T ss_dssp CCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCCCCCTTC
T ss_pred CCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccccccccc
Confidence 55554445555555555555555555544444445555555555555554442210
Q ss_pred ----------------ccccCccCCcEEEccCCccccccCc-cccCCCCCcEEECCCCcCC-----CccchhhhcCCCCC
Q 045861 327 ----------------STFLSLRDILVFNFSSNSLNGSLPL-DIGNLKVVVGIDLSRNNLS-----DSIPTVIGGLSNLA 384 (508)
Q Consensus 327 ----------------~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~-----~~~~~~~~~l~~L~ 384 (508)
..+..+++|++|++++|++++..+. .+..+++|+.|++++|.+. +..+..|.++++|+
T Consensus 404 ~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~l~~L~ 483 (844)
T 3j0a_A 404 NLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQ 483 (844)
T ss_dssp CEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSSCBCCEE
T ss_pred ceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhcCccccc
Confidence 0123566777777777777643322 3445677777778777775 23345577888999
Q ss_pred EEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCC
Q 045861 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSF 464 (508)
Q Consensus 385 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~ 464 (508)
.|+|++|.+++..+..|.++++|+.|+|++|++++..+..+. ++|+.|++++|++++..|.. +.++..+++++|||
T Consensus 484 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~--~~~L~~l~l~~Np~ 559 (844)
T 3j0a_A 484 VLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDV--FVSLSVLDITHNKF 559 (844)
T ss_dssp CCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCC--CSSCCEEEEEEECC
T ss_pred EEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhH--hCCcCEEEecCCCc
Confidence 999999999888888888899999999999999977776665 78999999999998766653 56899999999999
Q ss_pred CCCCCCC
Q 045861 465 LCGSPNL 471 (508)
Q Consensus 465 ~c~~~~~ 471 (508)
.|+|+..
T Consensus 560 ~C~c~~~ 566 (844)
T 3j0a_A 560 ICECELS 566 (844)
T ss_dssp CCSSSCC
T ss_pred ccccccH
Confidence 9999864
|
| >3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-48 Score=404.56 Aligned_cols=431 Identities=22% Similarity=0.217 Sum_probs=341.3
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
.-++++.+++.++ .+|..+. +++++|++++|++++..+..|+++++|++|++++|++.+..|.+|.++++|++|+++
T Consensus 12 ~~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls 88 (606)
T 3vq2_A 12 PNITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILT 88 (606)
T ss_dssp TTTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CCCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECC
Confidence 3468999999998 6676553 899999999999998888899999999999999999998888999999999999999
Q ss_pred cccCCCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCccccc-ccChhhcCCCCCCEEeCCCCcCcCC
Q 045861 102 NNNFDGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG-TIPSTIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 102 ~n~~~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~-~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
+|.+... .+++|++|++++|.+.+..+..+.++++|++|++++|.+.+ .+|..|+.+++|++|++++|.+...
T Consensus 89 ~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~ 168 (606)
T 3vq2_A 89 GNPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTI 168 (606)
T ss_dssp TCCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEE
T ss_pred CCcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceec
Confidence 9998766 57899999999999997777889999999999999999986 5699999999999999999998875
Q ss_pred CCCCcccccccCCCC-CCEEEccCccCccCCChhhhhc------------------------------------------
Q 045861 175 TSELSFLSSLRNCRN-LKVIDLTGNQLHGILPSSMGNL------------------------------------------ 211 (508)
Q Consensus 175 ~~~~~~~~~l~~~~~-L~~L~l~~~~~~~~~~~~~~~~------------------------------------------ 211 (508)
+... +..+..++. +..+++++|.+++..+..+...
T Consensus 169 ~~~~--~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~ 246 (606)
T 3vq2_A 169 TVND--LQFLRENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERN 246 (606)
T ss_dssp CTTT--THHHHHCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCC
T ss_pred Chhh--hhhhhccccccceeeccCCCcceeCcccccCceeeeeeccCCccchhHHHHHhccccccccccccccccccCCc
Confidence 4321 011222221 2345555555443333222211
Q ss_pred -------------------------------------ccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC
Q 045861 212 -------------------------------------STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254 (508)
Q Consensus 212 -------------------------------------~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 254 (508)
.++++.|+++++.+. .+| .+..+++|++|++++|.+ +.+|
T Consensus 247 l~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l-~~lp 323 (606)
T 3vq2_A 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQL-KQFP 323 (606)
T ss_dssp CSCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGSCGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCC-SSCC
T ss_pred ccccChHHhhhhhhccHhheeccccccccccccccccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccC-cccc
Confidence 114444444444442 223 455556666666666666 3455
Q ss_pred ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeee--CCcccCCCCCCCEEEcCCCcccccCCccccCc
Q 045861 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGS--IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332 (508)
Q Consensus 255 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 332 (508)
.+ .+++|++|++++|...+.. .+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+.... ..+..+
T Consensus 324 -~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~-~~~~~l 398 (606)
T 3vq2_A 324 -TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAIIMS-ANFMGL 398 (606)
T ss_dssp -CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEEEC-CCCTTC
T ss_pred -cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCccccch-hhccCC
Confidence 33 6667777777776443322 456778888888888887655 3677888899999999999888654 778889
Q ss_pred cCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc-cCcccccCCCCCCEE
Q 045861 333 RDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG-SIPESLGDLRSLEFL 410 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L 410 (508)
++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+++ ..|..+..+++|++|
T Consensus 399 ~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L 478 (606)
T 3vq2_A 399 EELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478 (606)
T ss_dssp TTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred CCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccCCCCCEE
Confidence 999999999999987776 678899999999999999998888999999999999999999987 478889999999999
Q ss_pred ECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCC
Q 045861 411 DLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFL 465 (508)
Q Consensus 411 ~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~ 465 (508)
++++|++++..|..+..+++|++|++++|++++..|.. ..+++|+.+++++|...
T Consensus 479 ~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~ 534 (606)
T 3vq2_A 479 DLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE 534 (606)
T ss_dssp ECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC
T ss_pred ECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc
Confidence 99999999998999999999999999999999776765 45788999999999654
|
| >2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.6e-48 Score=399.34 Aligned_cols=457 Identities=20% Similarity=0.229 Sum_probs=387.2
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..+..|.++++|++|++++|++++..+..|+++++|++|++++|+
T Consensus 33 L~Ls~n~l~-~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 111 (570)
T 2z63_A 33 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 111 (570)
T ss_dssp EECCSCCCC-EECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTSC
T ss_pred EEccCCccC-ccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccccccc
Confidence 589999999 5555566999999999999999998778889999999999999999998888999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC----cEEEccCccccc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL----SILGIRTNSFSG 149 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~i~~ 149 (508)
+....+..++++++|++|++++|.+... .+++|++|++++|.+++..+..+..+++| +.+++++|.+.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~~n~l~~ 191 (570)
T 2z63_A 112 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 191 (570)
T ss_dssp CCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred cccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccCCCCcee
Confidence 9866555799999999999999998763 47899999999999997777888888888 899999999998
Q ss_pred ccChhhcCCCCCCEEeCCCCcCcC-------------------------------CCC----------------------
Q 045861 150 TIPSTIANLRNLQWLDLSFNYLTS-------------------------------STS---------------------- 176 (508)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~n~~~~-------------------------------~~~---------------------- 176 (508)
..+..+... +|+.|++++|.... ++.
T Consensus 192 ~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l~~~~~~ 270 (570)
T 2z63_A 192 IQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 270 (570)
T ss_dssp ECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEEEETTEE
T ss_pred cCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhhhcchhh
Confidence 888777665 78888887762110 000
Q ss_pred CCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCcc
Q 045861 177 ELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPIS 256 (508)
Q Consensus 177 ~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 256 (508)
.......+..+++|+.|+++++.+. ..|..+... +|++|++++|.+. .+|. ..+++|+.|++++|.+....+.
T Consensus 271 ~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~- 343 (570)
T 2z63_A 271 LDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF--GWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE- 343 (570)
T ss_dssp ESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC--CCSEEEEESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC-
T ss_pred hhhchhhhcCcCcccEEEecCccch-hhhhhhccC--CccEEeeccCccc-ccCc--ccccccCEEeCcCCcccccccc-
Confidence 0001144667899999999999887 466666555 9999999999887 4554 4789999999999998765554
Q ss_pred ccCCCCCCcEEccCCcCcccc--chhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC-ccccCcc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSI--PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLR 333 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~ 333 (508)
..+++|++|++++|.+.+.. +..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+....+ ..+..++
T Consensus 344 -~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 421 (570)
T 2z63_A 344 -VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLR 421 (570)
T ss_dssp -CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCT
T ss_pred -ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccccCCCCEEEccCCccccccchhhhhcCC
Confidence 78899999999999988543 67889999999999999998765555 8899999999999999988765 5788999
Q ss_pred CCcEEEccCCccccccCccccCCCCCcEEECCCCcCC-CccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEEC
Q 045861 334 DILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS-DSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL 412 (508)
Q Consensus 334 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 412 (508)
+|++|++++|.+.+..+..+..+++|++|++++|.+. +.+|..+..+++|++|++++|.+++..|..+..+++|++|++
T Consensus 422 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l 501 (570)
T 2z63_A 422 NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNM 501 (570)
T ss_dssp TCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeC
Confidence 9999999999999889999999999999999999997 468888999999999999999999888999999999999999
Q ss_pred CCCcccccCcccccCCCCCCEEeCCCCcceecCCCcccc-CCCC--cccccCCCCCCCCC
Q 045861 413 SNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESF-ANFS--DNSFMGNSFLCGSP 469 (508)
Q Consensus 413 ~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~-~~l~--~l~l~~n~~~c~~~ 469 (508)
++|++++..+..+..+++|+.|++++|++++.+|....+ .++. ...+.+.+ .|.-|
T Consensus 502 ~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~wl~~~~~~~~~~~-~C~~~ 560 (570)
T 2z63_A 502 ASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLSRWLNKNSQKEQGSA-KCSGS 560 (570)
T ss_dssp CSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHHHHHHHHHTGGGEESCC-BBTTT
T ss_pred CCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHHHHHHHHhccccCCCch-hhCCC
Confidence 999999988889999999999999999999888875443 2222 13344554 66544
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.1e-48 Score=398.61 Aligned_cols=449 Identities=19% Similarity=0.248 Sum_probs=349.0
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
|+++++++ ++|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..|.+|+++++|++|++++|++
T Consensus 11 ~~~~~~l~-~ip~~~---~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 86 (549)
T 2z81_A 11 DGRSRSFT-SIPSGL---TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHL 86 (549)
T ss_dssp ECTTSCCS-SCCSCC---CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred ECCCCccc-cccccC---CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCcc
Confidence 56788888 888876 37899999999999877788899999999999999999988888999999999999999999
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCC-ccccCCCCCcEEEccCcccccccCh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIP-SFIFNASKLSILGIRTNSFSGTIPS 153 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~~~ 153 (508)
.+..+..|+++++|++|++++|.+... .+++|++|++++|...+.++ ..+.++++|++|++++|.+++..|.
T Consensus 87 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 166 (549)
T 2z81_A 87 SSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQ 166 (549)
T ss_dssp CSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTT
T ss_pred CccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChh
Confidence 877777799999999999999988743 46789999999998443444 6788899999999999999888888
Q ss_pred hhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCC--ChhhhhcccccCeeEccCCcCcccCCh
Q 045861 154 TIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL--PSSMGNLSTSLEYIYMPYCRRSGRIPE 231 (508)
Q Consensus 154 ~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~--~~~~~~~~~~L~~L~l~~~~~~~~~~~ 231 (508)
.++.+++|++|++++|.+...+. ..+..+++|+.|++++|.+.+.. +..+....+.++.|++.++.+.+..+.
T Consensus 167 ~l~~l~~L~~L~l~~n~~~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~ 241 (549)
T 2z81_A 167 SLKSIRDIHHLTLHLSESAFLLE-----IFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFN 241 (549)
T ss_dssp TTTTCSEEEEEEEECSBSTTHHH-----HHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHH
T ss_pred hhhccccCceEecccCcccccch-----hhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHH
Confidence 88888888888888877654321 12345677888888888776532 222222334666666666655443222
Q ss_pred ----hhhcCCCCcEEEcccCccccc-----------------------------------cCccccCCCCCCcEEccCCc
Q 045861 232 ----EIGNLINLITMSLGINKLTGS-----------------------------------IPISLGKLQKLQGLYLYKNK 272 (508)
Q Consensus 232 ----~l~~l~~L~~L~l~~~~~~~~-----------------------------------~~~~l~~~~~L~~L~l~~n~ 272 (508)
.+..+++|+.+++++|.+.+. .+..+...++|+.|++++|.
T Consensus 242 ~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~ 321 (549)
T 2z81_A 242 ELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSK 321 (549)
T ss_dssp HHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSC
T ss_pred HHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCc
Confidence 223445555555555544321 01112224678888999988
Q ss_pred Cccccchhh-hCCCCCcEEEeeCceeeeeCC---cccCCCCCCCEEEcCCCcccccCC--ccccCccCCcEEEccCCccc
Q 045861 273 LEGSIPDSL-CNLGRLVELQFYDNKLFGSIP---ACIGKLSPLRNLLLHSNVLTYVIP--STFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 273 l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~~---~~~~~~~~L~~L~l~~n~~~~~~~--~~~~~~~~L~~L~L~~n~l~ 346 (508)
+. .+|..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+++..+ ..+..+++|++|++++|+++
T Consensus 322 l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~ 400 (549)
T 2z81_A 322 VF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH 400 (549)
T ss_dssp CC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC
T ss_pred cc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc
Confidence 87 555554 679999999999999876653 447788999999999999987643 45888999999999999998
Q ss_pred cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCccccc
Q 045861 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFE 426 (508)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 426 (508)
.+|..+..+++|++|++++|++.+ ++..+ .++|++|++++|++++. +..+++|++|++++|+++ .+|. ..
T Consensus 401 -~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~N~l~~~----~~~l~~L~~L~Ls~N~l~-~ip~-~~ 470 (549)
T 2z81_A 401 -PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSNNNLDSF----SLFLPRLQELYISRNKLK-TLPD-AS 470 (549)
T ss_dssp -CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCSSCCSCC----CCCCTTCCEEECCSSCCS-SCCC-GG
T ss_pred -cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCCCChhhh----cccCChhcEEECCCCccC-cCCC-cc
Confidence 678888889999999999999984 44332 36899999999999854 357899999999999999 4554 46
Q ss_pred CCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 427 KLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 427 ~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.+++|++|++++|++++..|.. ..+.+++.+++++|||.|+||.
T Consensus 471 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 471 LFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp GCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHHH
T ss_pred cCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCcc
Confidence 7899999999999999766663 5688999999999999999984
|
| >3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-46 Score=402.46 Aligned_cols=433 Identities=20% Similarity=0.153 Sum_probs=346.5
Q ss_pred cEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC-chhccCCCCCCEeeCcc
Q 045861 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI-PHEIGNLHNLEYLVLEN 102 (508)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~ 102 (508)
+..+.+++.++ .+|. ..+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|.++++|++|+|++
T Consensus 7 ~~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 7 RIAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred eEEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 46888999998 5665 4689999999999999888999999999999999999655444 88899999999999999
Q ss_pred ccCCCC------CCCCCCEEEccCCcccccCCcc--ccCCCCCcEEEccCcccccccC-hhhcCCCCCCEEeCCCCcCcC
Q 045861 103 NNFDGP------RHSNLERLYLERNNFSGTIPSF--IFNASKLSILGIRTNSFSGTIP-STIANLRNLQWLDLSFNYLTS 173 (508)
Q Consensus 103 n~~~~~------~~~~L~~L~l~~~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~~~~ 173 (508)
|.+... .+++|++|++++|.+++..+.. +.++++|++|++++|.+++..+ ..|+.+++|++|++++|.+..
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 998754 6789999999999998766554 8999999999999999987654 578999999999999999876
Q ss_pred CCCCCcccccccCC--CCCCEEEccCccCccCCChhhhhcc-----cccCeeEccCCcCcccCChhhhc-----------
Q 045861 174 STSELSFLSSLRNC--RNLKVIDLTGNQLHGILPSSMGNLS-----TSLEYIYMPYCRRSGRIPEEIGN----------- 235 (508)
Q Consensus 174 ~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~~~~-----~~L~~L~l~~~~~~~~~~~~l~~----------- 235 (508)
... ..+..+ ++|+.|++++|.+.+..+..+.... ..|+.|++++|.+.+..+..+..
T Consensus 163 ~~~-----~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~ 237 (844)
T 3j0a_A 163 VCE-----HELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLI 237 (844)
T ss_dssp CCS-----GGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEE
T ss_pred eCH-----HHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCccccccee
Confidence 432 344444 7899999999999887766554433 14999999999766554433321
Q ss_pred ---------------------------CCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCc
Q 045861 236 ---------------------------LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLV 288 (508)
Q Consensus 236 ---------------------------l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~ 288 (508)
.++|+.|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|+
T Consensus 238 l~~~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~ 317 (844)
T 3j0a_A 238 LAHHIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQ 317 (844)
T ss_dssp CCSSCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCC
T ss_pred cccccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCC
Confidence 26899999999999988888999999999999999999988888999999999
Q ss_pred EEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccC------------------
Q 045861 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP------------------ 350 (508)
Q Consensus 289 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~------------------ 350 (508)
+|++++|.+.+..+..+..+++|+.|++++|.+....+..|..+++|++|++++|.+++...
T Consensus 318 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~L~~L~l~~N~l~~l~ 397 (844)
T 3j0a_A 318 VLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTIHFIPSIPDIFLSGNKLVTLP 397 (844)
T ss_dssp EEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCCSSCCSCSEEEEESCCCCCCC
T ss_pred EEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcccCCCCcchhccCCCCccccc
Confidence 99999999988888999999999999999999998888889999999999999998874211
Q ss_pred c----------------------cccCCCCCcEEECCCCcCCCccch-hhhcCCCCCEEECcCCccc-----ccCccccc
Q 045861 351 L----------------------DIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQ-----GSIPESLG 402 (508)
Q Consensus 351 ~----------------------~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~-----~~~~~~~~ 402 (508)
. .+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.++ +..+..|.
T Consensus 398 ~~~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~~ 477 (844)
T 3j0a_A 398 KINLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFE 477 (844)
T ss_dssp CCCTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCSS
T ss_pred ccccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhhc
Confidence 0 011344455555555555432221 2334455555566655554 22335577
Q ss_pred CCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 403 DLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 403 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
++++|+.|+|++|++++.++..|.++++|+.|++++|++++ +|......+|+.+++++|....
T Consensus 478 ~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~~~L~~L~Ls~N~l~~ 540 (844)
T 3j0a_A 478 GLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTV-LSHNDLPANLEILDISRNQLLA 540 (844)
T ss_dssp CBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSS-CCCCCCCSCCCEEEEEEECCCC
T ss_pred CcccccEEECCCCcccccChhHccchhhhheeECCCCCCCc-cChhhhhccccEEECCCCcCCC
Confidence 88889999999999998888889999999999999999984 5554444889999999996544
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-47 Score=388.22 Aligned_cols=448 Identities=20% Similarity=0.243 Sum_probs=366.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
||+++|+++ .+|..++ ++|++|++++|.+++..+..|..+++|++|++++|++++..|..|+++++|++|++++|+
T Consensus 5 l~ls~n~l~-~ip~~~~---~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~ 80 (520)
T 2z7x_B 5 VDRSKNGLI-HVPKDLS---QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNK 80 (520)
T ss_dssp EECTTSCCS-SCCCSCC---TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSC
T ss_pred EecCCCCcc-ccccccc---ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCc
Confidence 589999999 7997773 899999999999997777789999999999999999998888999999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC--cEEEccCccc--cc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL--SILGIRTNSF--SG 149 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~ 149 (508)
+. .+|.. .+++|++|++++|.+... .+++|++|++++|.+++ ..+..+++| ++|++++|.+ .+
T Consensus 81 l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~~~~ 154 (520)
T 2z7x_B 81 LV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETYGEK 154 (520)
T ss_dssp CC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTTTSS
T ss_pred ee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeecccccccc
Confidence 98 56655 899999999999998763 46789999999998875 456667777 9999999988 66
Q ss_pred ccChhhcCCC-CCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCcc-------CccCCChhhhhcccccCeeEcc
Q 045861 150 TIPSTIANLR-NLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ-------LHGILPSSMGNLSTSLEYIYMP 221 (508)
Q Consensus 150 ~~~~~~~~l~-~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~-------~~~~~~~~~~~~~~~L~~L~l~ 221 (508)
..|..+..+. ....+++++|.+...... ..+..+++|+.+++++|. +.+..+ .+...+ +++.|++.
T Consensus 155 ~~~~~l~~l~~~~l~l~l~~n~~~~~~~~----~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~-~L~~L~l~ 228 (520)
T 2z7x_B 155 EDPEGLQDFNTESLHIVFPTNKEFHFILD----VSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNP-KLSNLTLN 228 (520)
T ss_dssp CCTTTTTTCCEEEEEEECCSSSCCCCCCC----CCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCT-TCCEEEEE
T ss_pred cccccccccccceEEEEeccCcchhhhhh----hhhhcccceeeccccccccccccceeecchh-hhcccc-chhhcccc
Confidence 7777666554 233566777766542211 456788999999999886 444333 455554 89999999
Q ss_pred CCcCcccCChhh---hcCCCCcEEEcccCccccccCccc-----cCCCCCCcEEccCCcCccccc-hhhhCC---CCCcE
Q 045861 222 YCRRSGRIPEEI---GNLINLITMSLGINKLTGSIPISL-----GKLQKLQGLYLYKNKLEGSIP-DSLCNL---GRLVE 289 (508)
Q Consensus 222 ~~~~~~~~~~~l---~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~~~l---~~L~~ 289 (508)
++.+.+..+..+ ...++|++|++++|.+.+.+|..+ +.++.|+.+++++|.+ .+| ..+..+ ++|+.
T Consensus 229 ~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~ 306 (520)
T 2z7x_B 229 NIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKN 306 (520)
T ss_dssp EEEEEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSE
T ss_pred ccccCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeE
Confidence 887765332221 125689999999999998888888 8899999999999988 344 444444 68999
Q ss_pred EEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcccc--ccCccccCCCCCcEEECCCC
Q 045861 290 LQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG--SLPLDIGNLKVVVGIDLSRN 367 (508)
Q Consensus 290 L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n 367 (508)
|++++|.+.... .+..+++|++|++++|.+.+..+..+..+++|++|++++|++++ .+|..+..+++|++|++++|
T Consensus 307 L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N 384 (520)
T 2z7x_B 307 FTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQN 384 (520)
T ss_dssp EEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSS
T ss_pred EEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCC
Confidence 999999875432 23678999999999999999888889999999999999999986 45677899999999999999
Q ss_pred cCCCccch-hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 368 NLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 368 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
.+.+.+|. .+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|
T Consensus 385 ~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~ 460 (520)
T 2z7x_B 385 SVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVP 460 (520)
T ss_dssp CCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCC
T ss_pred cCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccC
Confidence 99975665 478899999999999999877777664 79999999999999 67777779999999999999998 677
Q ss_pred Cc--cccCCCCcccccCCCCCCCCCCCC
Q 045861 447 SG--ESFANFSDNSFMGNSFLCGSPNLQ 472 (508)
Q Consensus 447 ~~--~~~~~l~~l~l~~n~~~c~~~~~~ 472 (508)
.. ..+.+++.+++++||+.|+|+..+
T Consensus 461 ~~~~~~l~~L~~L~l~~N~~~c~c~~~~ 488 (520)
T 2z7x_B 461 DGIFDRLTSLQKIWLHTNPWDCSCPRID 488 (520)
T ss_dssp TTTTTTCTTCCEEECCSSCBCCCHHHHH
T ss_pred HHHhccCCcccEEECcCCCCcccCCchH
Confidence 64 457889999999999999998543
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-46 Score=385.66 Aligned_cols=437 Identities=20% Similarity=0.253 Sum_probs=320.1
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCC------C---------------------------CCCcccC-
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLT------G---------------------------LIPRDIG- 66 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~------~---------------------------~~~~~~~- 66 (508)
.+++.|+++++.+.+.+|..+..+++|++|+|++|.+. + ..|..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 47788888888888888888888888888888888551 0 1111111
Q ss_pred ------------------CCCCCCeEEcc--CCccccCCchhccCCCCCCEeeCccccCCC------------------C
Q 045861 67 ------------------NLTSARALLLG--NNNLIGEIPHEIGNLHNLEYLVLENNNFDG------------------P 108 (508)
Q Consensus 67 ------------------~l~~L~~L~L~--~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------------~ 108 (508)
....++.+.+. +|++++ +|..++++++|++|++++|.+++ +
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~i 239 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYK 239 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccC
Confidence 11223333332 567776 78888889999999999888877 2
Q ss_pred -------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcc-ccc-ccChhhcCC------CCCCEEeCCCCcCcC
Q 045861 109 -------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNS-FSG-TIPSTIANL------RNLQWLDLSFNYLTS 173 (508)
Q Consensus 109 -------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~~~~l------~~L~~L~l~~n~~~~ 173 (508)
.+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.+ ++|++|++++|.+..
T Consensus 240 p~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ 319 (636)
T 4eco_A 240 TEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKT 319 (636)
T ss_dssp TSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSS
T ss_pred chhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCc
Confidence 36778888888888777888888888888888888887 777 677777765 888888888888775
Q ss_pred CCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC-CcEEEcccCccccc
Q 045861 174 STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN-LITMSLGINKLTGS 252 (508)
Q Consensus 174 ~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~ 252 (508)
++. ...+..+++|+.|++++|.+.+.+| .+...+ +|++|++++|.+. .+|..+..+++ |++|++++|.++ .
T Consensus 320 ip~----~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~-~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~ 391 (636)
T 4eco_A 320 FPV----ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEI-KLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-Y 391 (636)
T ss_dssp CCC----HHHHTTCTTCCEEECCSCCCEEECC-CCEEEE-EESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-S
T ss_pred cCc----hhhhccCCCCCEEeCcCCcCccchh-hhCCCC-CCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-c
Confidence 432 0157778888888888888887777 666665 8888888888877 67777888888 888888888888 6
Q ss_pred cCccccCCC--CCCcEEccCCcCccccchhhh-------CCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccc
Q 045861 253 IPISLGKLQ--KLQGLYLYKNKLEGSIPDSLC-------NLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTY 323 (508)
Q Consensus 253 ~~~~l~~~~--~L~~L~l~~n~l~~~~~~~~~-------~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~ 323 (508)
+|..+...+ +|++|++++|.+.+..|..+. .+++|++|++++|.+....+..+..+++|++|++++|.++.
T Consensus 392 lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~ 471 (636)
T 4eco_A 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTE 471 (636)
T ss_dssp CCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSB
T ss_pred cchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCC
Confidence 676666654 788888888888877777776 67788888888888874444445567888888888888885
Q ss_pred cCCccccCc-------cCCcEEEccCCccccccCcccc--CCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC------
Q 045861 324 VIPSTFLSL-------RDILVFNFSSNSLNGSLPLDIG--NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL------ 388 (508)
Q Consensus 324 ~~~~~~~~~-------~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L------ 388 (508)
.....+... ++|++|++++|.++ .+|..+. .+++|+.|++++|++++ +|..+..+++|++|++
T Consensus 472 i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~l 549 (636)
T 4eco_A 472 IPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDA 549 (636)
T ss_dssp CCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCT
T ss_pred cCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCccc
Confidence 554444433 28888888888888 6666665 78888888888888886 7777888888888888
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccc----cCCCCcccccCCCC
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGES----FANFSDNSFMGNSF 464 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~----~~~l~~l~l~~n~~ 464 (508)
++|.+.+.+|..+..+++|++|++++|++. .+|..+. ++|+.|++++|++.. ++.... ......+.......
T Consensus 550 s~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~Ls~N~l~~-~~~~~~~~~~~~~~~~l~~~~~~~ 625 (636)
T 4eco_A 550 QGNRTLREWPEGITLCPSLTQLQIGSNDIR-KVNEKIT--PNISVLDIKDNPNIS-IDLSYVCPYIEAGMYMLFYDKTQD 625 (636)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--TTCCEEECCSCTTCE-EECTTTHHHHHTTCCEEECCTTSE
T ss_pred ccCcccccChHHHhcCCCCCEEECCCCcCC-ccCHhHh--CcCCEEECcCCCCcc-ccHHhcchhhhcccceeecCCccc
Confidence 456677788888888888888888888884 5566554 788888888888773 332211 12223344444555
Q ss_pred CCCCCCCC
Q 045861 465 LCGSPNLQ 472 (508)
Q Consensus 465 ~c~~~~~~ 472 (508)
.|+||.+.
T Consensus 626 i~~C~~L~ 633 (636)
T 4eco_A 626 IRGCDALD 633 (636)
T ss_dssp EESCGGGC
T ss_pred cCCCcccc
Confidence 66777554
|
| >2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-45 Score=374.32 Aligned_cols=433 Identities=19% Similarity=0.181 Sum_probs=349.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|++++..|..+ .++++|++|++++|.+++..+..|..+++|++|++++|++++..+..|+++++|++|++++|+
T Consensus 31 L~Ls~n~l~~~~~~~~-~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 109 (549)
T 2z81_A 31 LDLSFNKITYIGHGDL-RACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNP 109 (549)
T ss_dssp EECCSSCCCEECSSTT-SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCC
T ss_pred EECcCCccCccChhhh-hcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCc
Confidence 5899999995555554 999999999999999998888899999999999999999998888889999999999999999
Q ss_pred ccc-CCchhccCCCCCCEeeCccccC-CCC------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC
Q 045861 81 LIG-EIPHEIGNLHNLEYLVLENNNF-DGP------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP 152 (508)
Q Consensus 81 l~~-~~~~~~~~l~~L~~L~L~~n~~-~~~------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~ 152 (508)
+.+ ..|..++++++|++|++++|.+ ..+ .+++|++|++++|.+++..+..+..+++|++|+++.|.+.....
T Consensus 110 l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~~~~~ 189 (549)
T 2z81_A 110 YQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAFLLE 189 (549)
T ss_dssp CSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBSTTHHH
T ss_pred ccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecccCcccccch
Confidence 986 3567899999999999999973 222 57899999999999998899999999999999999999874433
Q ss_pred hhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhh---cccccCeeEccCCcCccc-
Q 045861 153 STIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN---LSTSLEYIYMPYCRRSGR- 228 (508)
Q Consensus 153 ~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~---~~~~L~~L~l~~~~~~~~- 228 (508)
..+..+++|++|++++|.+.+.+... ......+++|+.|+++++.+.+..+..+.. ..+.++.+++.+|.+.+.
T Consensus 190 ~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~ 267 (549)
T 2z81_A 190 IFADILSSVRYLELRDTNLARFQFSP--LPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLG 267 (549)
T ss_dssp HHHHSTTTBSEEEEESCBCTTCCCCC--CSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCS
T ss_pred hhHhhcccccEEEccCCccccccccc--cchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccc
Confidence 33467999999999999988743111 122345667778888777666543333221 112556666665544321
Q ss_pred ----------------------------------CChhhhcCCCCcEEEcccCccccccCccc-cCCCCCCcEEccCCcC
Q 045861 229 ----------------------------------IPEEIGNLINLITMSLGINKLTGSIPISL-GKLQKLQGLYLYKNKL 273 (508)
Q Consensus 229 ----------------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-~~~~~L~~L~l~~n~l 273 (508)
++..+...++|+.+++++|.+. .+|..+ ..+++|++|++++|.+
T Consensus 268 ~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l 346 (549)
T 2z81_A 268 DFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLM 346 (549)
T ss_dssp CCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCC
T ss_pred cccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCcc
Confidence 1222334578999999999987 566555 5799999999999999
Q ss_pred ccccch---hhhCCCCCcEEEeeCceeeeeCC--cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc
Q 045861 274 EGSIPD---SLCNLGRLVELQFYDNKLFGSIP--ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 274 ~~~~~~---~~~~l~~L~~L~L~~n~~~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
.+..+. .+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.++. .+..+..+++|++|++++|.++ .
T Consensus 347 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~~L~~L~Ls~N~l~-~ 424 (549)
T 2z81_A 347 VEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHP-MPDSCQWPEKMRFLNLSSTGIR-V 424 (549)
T ss_dssp CHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCCC-CCSCCCCCTTCCEEECTTSCCS-C
T ss_pred ccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCcc-CChhhcccccccEEECCCCCcc-c
Confidence 876543 36789999999999999875432 457889999999999999984 5667888999999999999998 4
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCC
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 428 (508)
++..+ .++|++|++++|++++.. ..+++|++|++++|+++ .+|. ...+++|++|++++|++++.+++.+..+
T Consensus 425 l~~~~--~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l 496 (549)
T 2z81_A 425 VKTCI--PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRL 496 (549)
T ss_dssp CCTTS--CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGC
T ss_pred ccchh--cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcC
Confidence 44333 368999999999999643 57899999999999998 6665 4678999999999999999988899999
Q ss_pred CCCCEEeCCCCcceecCCC
Q 045861 429 LYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 429 ~~L~~L~l~~n~l~~~~p~ 447 (508)
++|+.|++++|++.+.+|.
T Consensus 497 ~~L~~L~l~~N~~~~~~~~ 515 (549)
T 2z81_A 497 TSLQKIWLHTNPWDCSCPR 515 (549)
T ss_dssp TTCCEEECCSSCBCCCHHH
T ss_pred cccCEEEecCCCccCCCcc
Confidence 9999999999999987774
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-43 Score=371.00 Aligned_cols=462 Identities=19% Similarity=0.217 Sum_probs=339.1
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
+.++-+++ ++|.++ -+++++|++++|.|+...+.+|.++++|++|+|++|+++++.+.+|+++++|++|+|++|++
T Consensus 37 ~c~~~~l~-~vP~~l---p~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l 112 (635)
T 4g8a_A 37 QCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 112 (635)
T ss_dssp ECTTSCCS-SCCSSS---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred ECCCCCcC-ccCCCC---CcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcC
Confidence 45566777 788554 24789999999999877777899999999999999999888888899999999999999998
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC------CCCCCCEEEccCCcccc-cCCccccCCCCCcEEEccCcccccccChh
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP------RHSNLERLYLERNNFSG-TIPSFIFNASKLSILGIRTNSFSGTIPST 154 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~------~~~~L~~L~l~~~~~~~-~~~~~~~~l~~L~~L~l~~~~i~~~~~~~ 154 (508)
.+..+..|.++++|++|++++|.++.+ .+++|++|++++|.+.. ..|..+..+++|++|++++|++++..+..
T Consensus 113 ~~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~ 192 (635)
T 4g8a_A 113 QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD 192 (635)
T ss_dssp CEECGGGGTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG
T ss_pred CCCCHHHhcCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccccc
Confidence 866667889999999999999988765 46789999999998865 35677888899999999999988777776
Q ss_pred hcCCCCC----CEEeCCCCcCcCCCCCCccc-------------------ccccCCCCCCEEEccCc-------------
Q 045861 155 IANLRNL----QWLDLSFNYLTSSTSELSFL-------------------SSLRNCRNLKVIDLTGN------------- 198 (508)
Q Consensus 155 ~~~l~~L----~~L~l~~n~~~~~~~~~~~~-------------------~~l~~~~~L~~L~l~~~------------- 198 (508)
|..+.++ ..++++.|.+..++...... ..+..+..++...+...
T Consensus 193 l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~ 272 (635)
T 4g8a_A 193 LRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDK 272 (635)
T ss_dssp GHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCT
T ss_pred ccchhhhhhhhhhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccc
Confidence 6544433 35666666655432211000 01112222222221100
Q ss_pred -----------------cCcc---CCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccccc-----
Q 045861 199 -----------------QLHG---ILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSI----- 253 (508)
Q Consensus 199 -----------------~~~~---~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~----- 253 (508)
.... .....+... ..++.+.+.++.+.... .+.....++.|++.++.+....
T Consensus 273 ~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~-~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~~~~l~ 349 (635)
T 4g8a_A 273 SALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCL-TNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFPTLKLK 349 (635)
T ss_dssp TTTGGGGGSEEEEEEEECCCSCEEECTTTTGGG-TTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCCCCBCT
T ss_pred cccccccchhhhhhhhhhhcccccchhhhhhhh-ccccccccccccccccc--ccccchhhhhhhcccccccCcCcccch
Confidence 0000 000111111 14444444444332211 1233344444444444333211
Q ss_pred --------------CccccCCCCCCcEEccCCcCcc--ccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 254 --------------PISLGKLQKLQGLYLYKNKLEG--SIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 254 --------------~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+.....+++|+.+++++|.+.. ..+..+..+.+|+.+++..+.... .+..+..+++|+.+++.
T Consensus 350 ~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~~L~~l~l~ 428 (635)
T 4g8a_A 350 SLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQ 428 (635)
T ss_dssp TCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCTTCCEEECT
T ss_pred hhhhcccccccCCCCcccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccccccchhhh
Confidence 1223457788899998887753 345667778889999998887754 44567789999999999
Q ss_pred CCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCC-CccchhhhcCCCCCEEECcCCcccc
Q 045861 318 SNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLS-DSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 318 ~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
++......+ ..|..+.+++.++++.|.+....+..+..++.++.|++++|.+. ...|..|..+++|++|+|++|++++
T Consensus 429 ~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~ 508 (635)
T 4g8a_A 429 HSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQ 508 (635)
T ss_dssp TSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCE
T ss_pred hccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCC
Confidence 888766544 56888999999999999999888999999999999999999754 4567889999999999999999998
Q ss_pred cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc-cc-CCCCcccccCCCCCCCCCCC
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE-SF-ANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~-~~l~~l~l~~n~~~c~~~~~ 471 (508)
..|..|.++++|++|+|++|++++..+..|.++++|++|++++|++++..|... .+ .+|+.+++++|||.|+|...
T Consensus 509 l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 509 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred cChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 889999999999999999999999999999999999999999999997777653 33 68999999999999999754
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.1e-45 Score=385.64 Aligned_cols=437 Identities=19% Similarity=0.243 Sum_probs=334.7
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEc-ccCCCCCCCCcc-----------------------------------
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISL-SHNQLTGLIPRD----------------------------------- 64 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L-~~n~l~~~~~~~----------------------------------- 64 (508)
.+++.|+|+++.+.+.+|..+..+++|++|+| ++|.+.+..+..
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 46788888888888888888888888888888 666554331110
Q ss_pred ----------------cCCCCCCCeEEccC--CccccCCchhccCCCCCCEeeCccccCCC------------------C
Q 045861 65 ----------------IGNLTSARALLLGN--NNLIGEIPHEIGNLHNLEYLVLENNNFDG------------------P 108 (508)
Q Consensus 65 ----------------~~~l~~L~~L~L~~--n~l~~~~~~~~~~l~~L~~L~L~~n~~~~------------------~ 108 (508)
......++.+.+.. |++.+ +|..++++++|++|+|++|.+++ +
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 01223344444443 67775 78888888888888888888877 2
Q ss_pred -------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcc-ccc-ccChhhcCCC-------CCCEEeCCCCcCc
Q 045861 109 -------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNS-FSG-TIPSTIANLR-------NLQWLDLSFNYLT 172 (508)
Q Consensus 109 -------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~-i~~-~~~~~~~~l~-------~L~~L~l~~n~~~ 172 (508)
.+++|++|++++|.+.+.+|..+.++++|++|++++|+ +++ .+|..++.++ +|+.|++++|.+.
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 36788888888888888889999999999999999998 877 6777665554 9999999999887
Q ss_pred CCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC-CcEEEcccCcccc
Q 045861 173 SSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN-LITMSLGINKLTG 251 (508)
Q Consensus 173 ~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~-L~~L~l~~~~~~~ 251 (508)
.++. ...+..+++|+.|++++|.++ .+| .+..++ +|+.|++++|.+. .+|..+..+++ |+.|++++|.+.
T Consensus 562 ~ip~----~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~-~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~- 632 (876)
T 4ecn_A 562 EFPA----SASLQKMVKLGLLDCVHNKVR-HLE-AFGTNV-KLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK- 632 (876)
T ss_dssp BCCC----HHHHTTCTTCCEEECTTSCCC-BCC-CCCTTS-EESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-
T ss_pred ccCC----hhhhhcCCCCCEEECCCCCcc-cch-hhcCCC-cceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-
Confidence 5432 015778889999999999888 666 666665 8999999999888 78888888888 999999999988
Q ss_pred ccCccccCCCC--CCcEEccCCcCccccchhh---h--CCCCCcEEEeeCceeeeeCCcc-cCCCCCCCEEEcCCCcccc
Q 045861 252 SIPISLGKLQK--LQGLYLYKNKLEGSIPDSL---C--NLGRLVELQFYDNKLFGSIPAC-IGKLSPLRNLLLHSNVLTY 323 (508)
Q Consensus 252 ~~~~~l~~~~~--L~~L~l~~n~l~~~~~~~~---~--~l~~L~~L~L~~n~~~~~~~~~-~~~~~~L~~L~l~~n~~~~ 323 (508)
.+|..+...+. |+.|++++|.+.+..+... . .+++|+.|++++|.+. .+|.. +..+++|+.|++++|.+..
T Consensus 633 ~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ 711 (876)
T 4ecn_A 633 YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNLMTS 711 (876)
T ss_dssp SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCCCSC
T ss_pred cCchhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCcCCc
Confidence 67777766654 9999999999876554322 2 3458999999999987 44444 4578999999999999885
Q ss_pred cCCccccC-------ccCCcEEEccCCccccccCcccc--CCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC----
Q 045861 324 VIPSTFLS-------LRDILVFNFSSNSLNGSLPLDIG--NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY---- 390 (508)
Q Consensus 324 ~~~~~~~~-------~~~L~~L~L~~n~l~~~~~~~~~--~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~---- 390 (508)
.....+.. +++|++|+|++|+++ .+|..+. .+++|+.|++++|++.+ +|..+..+++|+.|++++
T Consensus 712 ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~l 789 (876)
T 4ecn_A 712 IPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDA 789 (876)
T ss_dssp CCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCT
T ss_pred cChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCc
Confidence 55544443 348999999999998 6777776 89999999999999996 788888999999999976
Q ss_pred --CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc-ccCCCCcccccCCCCCC-
Q 045861 391 --NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE-SFANFSDNSFMGNSFLC- 466 (508)
Q Consensus 391 --n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~-~~~~l~~l~l~~n~~~c- 466 (508)
|.+.+.+|..+..+++|+.|+|++|++. .+|..+. ++|+.|++++|++...-+... .........+.+|++.+
T Consensus 790 s~N~l~~~ip~~l~~L~~L~~L~Ls~N~L~-~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~~~~~~~~~~~L~~n~~~~I 866 (876)
T 4ecn_A 790 EGNRILRQWPTGITTCPSLIQLQIGSNDIR-KVDEKLT--PQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQDI 866 (876)
T ss_dssp TCCBCCCCCCTTGGGCSSCCEEECCSSCCC-BCCSCCC--SSSCEEECCSCTTCEEECGGGHHHHHTTCCEEECCTTSEE
T ss_pred ccccccccChHHHhcCCCCCEEECCCCCCC-ccCHhhc--CCCCEEECCCCCCCccChHHccccccchheeecCCCcccc
Confidence 7778888999999999999999999994 6776654 689999999999874333321 22335556777777665
Q ss_pred -CCCCCCC
Q 045861 467 -GSPNLQV 473 (508)
Q Consensus 467 -~~~~~~~ 473 (508)
+||.+.+
T Consensus 867 ~gC~~L~l 874 (876)
T 4ecn_A 867 RGCDALGI 874 (876)
T ss_dssp ESCGGGCC
T ss_pred CCCCCccc
Confidence 8887654
|
| >4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-45 Score=378.16 Aligned_cols=413 Identities=19% Similarity=0.260 Sum_probs=346.3
Q ss_pred CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc------c---------------------------CCchhcc-
Q 045861 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI------G---------------------------EIPHEIG- 90 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~------~---------------------------~~~~~~~- 90 (508)
.+++.|+|+++.+.+.+|..++++++|++|+|++|.+. + ..+..+.
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~~~~l~l~l~~~~l~~~~~~~~~~ 160 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDFSD 160 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHHHHHHHhhHHHhhhccCchhhHHH
Confidence 58999999999999999999999999999999999752 1 0011111
Q ss_pred ------------------CCCCCCEeeCc--cccCCCC-----CCCCCCEEEccCCccccc-----------------CC
Q 045861 91 ------------------NLHNLEYLVLE--NNNFDGP-----RHSNLERLYLERNNFSGT-----------------IP 128 (508)
Q Consensus 91 ------------------~l~~L~~L~L~--~n~~~~~-----~~~~L~~L~l~~~~~~~~-----------------~~ 128 (508)
....++.+.+. +|.++++ .+++|++|++++|.+++. +|
T Consensus 161 ~~~~l~~~~l~~~~~~~~~~~~l~~l~l~~~~n~l~~ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip 240 (636)
T 4eco_A 161 LIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITFVSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKT 240 (636)
T ss_dssp HHHHHHHHCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhcCccccccccccccchhhhhhccccCCCccCCHHHhcccCCCEEECcCCccccccccccccccccchhcccCc
Confidence 11122222222 3444433 578999999999999975 89
Q ss_pred cccc--CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCc-CcC--CCCCCcccccccCCCCCCEEEccCccCccC
Q 045861 129 SFIF--NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY-LTS--STSELSFLSSLRNCRNLKVIDLTGNQLHGI 203 (508)
Q Consensus 129 ~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~ 203 (508)
..+. ++++|++|++++|.+.+.+|..|+.+++|++|++++|. +++ ++..+..+..+..+++|++|++++|.++ .
T Consensus 241 ~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ 319 (636)
T 4eco_A 241 EDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-T 319 (636)
T ss_dssp SCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-S
T ss_pred hhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-c
Confidence 9999 99999999999999999999999999999999999998 764 3332222222344589999999999999 6
Q ss_pred CCh--hhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCC-CCcEEccCCcCccccchh
Q 045861 204 LPS--SMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK-LQGLYLYKNKLEGSIPDS 280 (508)
Q Consensus 204 ~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~ 280 (508)
+|. .+..+. +|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..
T Consensus 320 ip~~~~l~~l~-~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~ 395 (636)
T 4eco_A 320 FPVETSLQKMK-KLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNI 395 (636)
T ss_dssp CCCHHHHTTCT-TCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSC
T ss_pred cCchhhhccCC-CCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchh
Confidence 777 788776 99999999999998898 8999999999999999999 78888999999 999999999999 77777
Q ss_pred hhCCC--CCcEEEeeCceeeeeCCcccC-------CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc
Q 045861 281 LCNLG--RLVELQFYDNKLFGSIPACIG-------KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351 (508)
Q Consensus 281 ~~~l~--~L~~L~L~~n~~~~~~~~~~~-------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 351 (508)
+...+ +|++|++++|.+.+..|..+. .+++|++|++++|.+.......+..+++|++|++++|.++...+.
T Consensus 396 ~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~~i~~~ 475 (636)
T 4eco_A 396 FDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLTEIPKN 475 (636)
T ss_dssp CCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCSBCCSS
T ss_pred hhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCCCcCHH
Confidence 76654 899999999999888888887 788999999999999977666777899999999999999943333
Q ss_pred cccCC-------CCCcEEECCCCcCCCccchhhh--cCCCCCEEECcCCcccccCcccccCCCCCCEEEC------CCCc
Q 045861 352 DIGNL-------KVVVGIDLSRNNLSDSIPTVIG--GLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDL------SNNS 416 (508)
Q Consensus 352 ~~~~l-------~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L------~~n~ 416 (508)
.+... ++|+.|++++|+++ .+|..+. .+++|++|++++|.+++ +|..+..+++|+.|++ ++|+
T Consensus 476 ~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~ 553 (636)
T 4eco_A 476 SLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNR 553 (636)
T ss_dssp SSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCB
T ss_pred HhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCc
Confidence 33333 39999999999999 6777776 99999999999999996 8888999999999999 5678
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
+.+.+|..+..+++|++|++++|++ +.+|.... ++|+.+++++||+.|
T Consensus 554 l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~-~~L~~L~Ls~N~l~~ 601 (636)
T 4eco_A 554 TLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT-PNISVLDIKDNPNIS 601 (636)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC-TTCCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCcC-CccCHhHh-CcCCEEECcCCCCcc
Confidence 8889999999999999999999999 58998744 899999999999987
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-44 Score=369.50 Aligned_cols=446 Identities=21% Similarity=0.224 Sum_probs=274.3
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
|+++|+++ .+|..+ .+++++|++++|.+++..+..|..+++|++|++++|++++..|++|.++++|++|++++|++
T Consensus 37 ~ls~~~L~-~ip~~~---~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l 112 (562)
T 3a79_B 37 DYSNRNLT-HVPKDL---PPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL 112 (562)
T ss_dssp ECTTSCCC-SCCTTS---CTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCC
T ss_pred EcCCCCCc-cCCCCC---CCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcC
Confidence 44455555 344433 24555555555555544444455555555555555555544444555555555555555554
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC--cEEEccCccc--ccc
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL--SILGIRTNSF--SGT 150 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L--~~L~l~~~~i--~~~ 150 (508)
. .+|.. .+++|++|++++|.+... .+++|++|++++|.+... .+..+++| ++|++++|.+ ++.
T Consensus 113 ~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~~~~~ 186 (562)
T 3a79_B 113 Q-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYHIKGG 186 (562)
T ss_dssp C-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCCCCSS
T ss_pred C-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccccccc
Confidence 4 33333 445555555555544432 223444444444444321 12222222 4444444444 333
Q ss_pred cChhhcCCCC-CCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCcc----CCChhhhhcccccCeeEccCCcC
Q 045861 151 IPSTIANLRN-LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHG----ILPSSMGNLSTSLEYIYMPYCRR 225 (508)
Q Consensus 151 ~~~~~~~l~~-L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~----~~~~~~~~~~~~L~~L~l~~~~~ 225 (508)
.|..+..+.. .-.+++++|.+..... ...+..+++|+.+++++|.... .....+...+ .++.+++.++.+
T Consensus 187 ~~~~l~~l~~~~l~l~l~~n~~~~~~~----~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~-~L~~L~L~~~~l 261 (562)
T 3a79_B 187 ETESLQIPNTTVLHLVFHPNSLFSVQV----NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP-TLLNVTLQHIET 261 (562)
T ss_dssp SCCEEEECCEEEEEEEECSSSCCCCCC----EEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS-SCEEEEEEEEEE
T ss_pred CcccccccCcceEEEEecCccchhhhh----hhcccccceEEEecccccccccchHHHHHHHHhccC-cceEEEecCCcC
Confidence 3333333220 0022333333322110 0233455566666666653110 0112233332 556666655544
Q ss_pred ccc----CChhhhcCCCCcEEEcccCccccccCccc-----cCCCCCCcEEccCCcCccccc-hhhh---CCCCCcEEEe
Q 045861 226 SGR----IPEEIGNLINLITMSLGINKLTGSIPISL-----GKLQKLQGLYLYKNKLEGSIP-DSLC---NLGRLVELQF 292 (508)
Q Consensus 226 ~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~~~---~l~~L~~L~L 292 (508)
.+. ++. ....++|++|++++|.+.+.+|..+ ..++.|+.+++..+.+ .+| ..+. ..++|++|++
T Consensus 262 ~~~~~~~~~~-~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l 338 (562)
T 3a79_B 262 TWKCSVKLFQ-FFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSI 338 (562)
T ss_dssp CHHHHHHHHH-HHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEE
T ss_pred cHHHHHHHHH-hhhcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEc
Confidence 331 111 1223478888888888887777666 5555555555555555 223 2222 2367999999
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc--cCccccCCCCCcEEECCCCcCC
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS--LPLDIGNLKVVVGIDLSRNNLS 370 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~ 370 (508)
++|.+.... ....+++|++|++++|.+.+..+..+..+++|++|++++|++++. .|..+..+++|++|++++|.+.
T Consensus 339 ~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~ 416 (562)
T 3a79_B 339 SDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLN 416 (562)
T ss_dssp ESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCB
T ss_pred cCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCC
Confidence 999874322 226789999999999999988888899999999999999999863 3567889999999999999999
Q ss_pred Cccc-hhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-
Q 045861 371 DSIP-TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG- 448 (508)
Q Consensus 371 ~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~- 448 (508)
+.+| ..+..+++|++|++++|.+++..+..+. ++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..
T Consensus 417 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~ 492 (562)
T 3a79_B 417 SHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGV 492 (562)
T ss_dssp SCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTS
T ss_pred CccChhhhcCcccCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHH
Confidence 7455 4588899999999999999877666554 79999999999999 56666669999999999999998 67764
Q ss_pred -cccCCCCcccccCCCCCCCCCCC
Q 045861 449 -ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 449 -~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
..+++++.+++++|||.|+|+..
T Consensus 493 ~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 493 FDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp TTTCTTCCCEECCSCCBCCCHHHH
T ss_pred HhcCCCCCEEEecCCCcCCCcchH
Confidence 46788999999999999999743
|
| >2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.6e-44 Score=365.69 Aligned_cols=433 Identities=19% Similarity=0.231 Sum_probs=357.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..|..|..+++|++|++++|+++. +|.. .+++|++|++++|+
T Consensus 26 L~Ls~n~i~-~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~L~~N~ 101 (520)
T 2z7x_B 26 LNISQNYIS-ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHNKLVK-ISCH--PTVNLKHLDLSFNA 101 (520)
T ss_dssp EECCSSCCC-CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSSCCCE-EECC--CCCCCSEEECCSSC
T ss_pred EECCCCccc-ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCCceee-cCcc--ccCCccEEeccCCc
Confidence 589999999 5555555999999999999999998888899999999999999999985 4544 89999999999999
Q ss_pred ccc-CCchhccCCCCCCEeeCccccCCCC---CCCCC--CEEEccCCcc--cccCCccccCCC-CCcEEEccCccccccc
Q 045861 81 LIG-EIPHEIGNLHNLEYLVLENNNFDGP---RHSNL--ERLYLERNNF--SGTIPSFIFNAS-KLSILGIRTNSFSGTI 151 (508)
Q Consensus 81 l~~-~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~i~~~~ 151 (508)
+.+ ..|..|+++++|++|++++|.+... .+++| ++|++++|.+ .+..|..+..+. +...+++++|.+.+.+
T Consensus 102 l~~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 181 (520)
T 2z7x_B 102 FDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFI 181 (520)
T ss_dssp CSSCCCCGGGGGCTTCCEEEEEESSCCGGGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEEEECCSSSCCCCC
T ss_pred cccccchhhhccCCcceEEEecCcccchhhccccccceeeEEEeecccccccccccccccccccceEEEEeccCcchhhh
Confidence 986 4689999999999999999998754 45677 9999999999 777788777665 3446778888876655
Q ss_pred Ch-hhcCCCCCCEEeCCCCc----CcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhh--cccccCeeEccCCc
Q 045861 152 PS-TIANLRNLQWLDLSFNY----LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN--LSTSLEYIYMPYCR 224 (508)
Q Consensus 152 ~~-~~~~l~~L~~L~l~~n~----~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~ 224 (508)
+. .+..+++|+.+++++|. +..... .+..+..+++|+.|+++++.+.+.....+.. ..++|++|++++|.
T Consensus 182 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~---~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~ 258 (520)
T 2z7x_B 182 LDVSVKTVANLELSNIKCVLEDNKCSYFLS---ILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVK 258 (520)
T ss_dssp CCCCCTTCSEEEECCEEECCSTTTTHHHHH---HHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEEEEEEE
T ss_pred hhhhhhcccceeeccccccccccccceeec---chhhhccccchhhccccccccCHHHHHHHHHHhhhCcccEEEeeccc
Confidence 43 46789999999999886 111111 1245778899999999998877543322221 12389999999999
Q ss_pred CcccCChhh-----hcCCCCcEEEcccCccccccC-ccccCC---CCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc
Q 045861 225 RSGRIPEEI-----GNLINLITMSLGINKLTGSIP-ISLGKL---QKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295 (508)
Q Consensus 225 ~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~l~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 295 (508)
+.+.+|..+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.... .+..+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 998888888 8899999999999988 344 444443 67999999999987432 1368899999999999
Q ss_pred eeeeeCCcccCCCCCCCEEEcCCCccccc--CCccccCccCCcEEEccCCccccccCc-cccCCCCCcEEECCCCcCCCc
Q 045861 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYV--IPSTFLSLRDILVFNFSSNSLNGSLPL-DIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~ 372 (508)
.+.+..+..+..+++|++|++++|.+.+. .+..+..+++|++|++++|.+++.+|. .+..+++|++|++++|++++.
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~ 414 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDT 414 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcc
Confidence 99888889999999999999999999873 446688999999999999999974554 478899999999999999877
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
.+..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.++.
T Consensus 415 ~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~ 486 (520)
T 2z7x_B 415 IFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 486 (520)
T ss_dssp GGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred hhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCccCHHHhccCCcccEEECcCCCCcccCCc
Confidence 666543 79999999999999 7787777999999999999999965555589999999999999999976654
|
| >4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-43 Score=371.28 Aligned_cols=411 Identities=18% Similarity=0.213 Sum_probs=341.4
Q ss_pred CCCcEEEcccCCCCCCCCcccCCCCCCCeEEc-cCCccccCCchhc----------------------------------
Q 045861 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLL-GNNNLIGEIPHEI---------------------------------- 89 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L-~~n~l~~~~~~~~---------------------------------- 89 (508)
.++..|+|+++.+.+.+|+.++++++|++|+| ++|.+.+..+...
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57999999999999999999999999999999 8887655422110
Q ss_pred -----------------cCCCCCCEeeCcc--ccCCCC-----CCCCCCEEEccCCcccc-----------------cCC
Q 045861 90 -----------------GNLHNLEYLVLEN--NNFDGP-----RHSNLERLYLERNNFSG-----------------TIP 128 (508)
Q Consensus 90 -----------------~~l~~L~~L~L~~--n~~~~~-----~~~~L~~L~l~~~~~~~-----------------~~~ 128 (508)
.....++.+.+.. |.++++ .+++|++|++++|.+++ .+|
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP 482 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITFISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYEN 482 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEEECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccchhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCC
Confidence 1112333333333 444433 57899999999999997 389
Q ss_pred cccc--CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCc-CcC--CCCCCcccc-cccCCCCCCEEEccCccCcc
Q 045861 129 SFIF--NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY-LTS--STSELSFLS-SLRNCRNLKVIDLTGNQLHG 202 (508)
Q Consensus 129 ~~~~--~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~--~~~~~~~~~-~l~~~~~L~~L~l~~~~~~~ 202 (508)
..+. ++++|++|++++|.+.+.+|..|+.+++|+.|++++|. +.+ ++..+..+. .+..+++|+.|++++|.+.
T Consensus 483 ~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~- 561 (876)
T 4ecn_A 483 EELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE- 561 (876)
T ss_dssp SCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-
T ss_pred hhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-
Confidence 9887 99999999999999999999999999999999999998 764 333222222 4566779999999999999
Q ss_pred CCCh--hhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCC-CCcEEccCCcCccccch
Q 045861 203 ILPS--SMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK-LQGLYLYKNKLEGSIPD 279 (508)
Q Consensus 203 ~~~~--~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~ 279 (508)
.+|. .+..++ +|+.|++++|.+. .+| .+..+++|+.|++++|.+. .+|..+..+++ |++|++++|.+. .+|.
T Consensus 562 ~ip~~~~l~~L~-~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~ 636 (876)
T 4ecn_A 562 EFPASASLQKMV-KLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPN 636 (876)
T ss_dssp BCCCHHHHTTCT-TCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCS
T ss_pred ccCChhhhhcCC-CCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCch
Confidence 6777 788776 9999999999998 777 8899999999999999999 78888999999 999999999998 7777
Q ss_pred hhhCCC--CCcEEEeeCceeeeeCCccc---C--CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcc
Q 045861 280 SLCNLG--RLVELQFYDNKLFGSIPACI---G--KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 280 ~~~~l~--~L~~L~L~~n~~~~~~~~~~---~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
.+...+ +|+.|++++|.+.+..+... . .+++|+.|++++|.+.......+..+++|++|+|++|.++ .+|..
T Consensus 637 ~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~ 715 (876)
T 4ecn_A 637 IFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPEN 715 (876)
T ss_dssp CCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSEEECCSCCCS-CCCTT
T ss_pred hhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCEEECCCCcCC-ccChH
Confidence 776665 49999999999876554322 2 3468999999999999665556678999999999999999 55544
Q ss_pred ccC--------CCCCcEEECCCCcCCCccchhhh--cCCCCCEEECcCCcccccCcccccCCCCCCEEECCC------Cc
Q 045861 353 IGN--------LKVVVGIDLSRNNLSDSIPTVIG--GLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN------NS 416 (508)
Q Consensus 353 ~~~--------l~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~------n~ 416 (508)
+.. +++|+.|++++|++. .+|..+. .+++|+.|+|++|.+++ +|..+..+++|+.|+|++ |+
T Consensus 716 ~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~ 793 (876)
T 4ecn_A 716 SLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNR 793 (876)
T ss_dssp SSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCB
T ss_pred HhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCccccc
Confidence 332 238999999999999 6787776 89999999999999996 788899999999999976 78
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
+.+.+|..+..+++|+.|++++|++ +.+|... .++|+.+++++|++..
T Consensus 794 l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l-~~~L~~LdLs~N~l~~ 841 (876)
T 4ecn_A 794 ILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL-TPQLYILDIADNPNIS 841 (876)
T ss_dssp CCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCC-CSSSCEEECCSCTTCE
T ss_pred ccccChHHHhcCCCCCEEECCCCCC-CccCHhh-cCCCCEEECCCCCCCc
Confidence 8889999999999999999999999 6899874 3789999999998754
|
| >4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.8e-42 Score=357.10 Aligned_cols=439 Identities=21% Similarity=0.189 Sum_probs=339.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|||++|+|+ .+|...|.++++|++|++++|.|++..+.+|.++++|++|+|++|++++..+.+|+++++|++|++++|+
T Consensus 57 LdLs~N~i~-~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls~N~ 135 (635)
T 4g8a_A 57 LDLSFNPLR-HLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETN 135 (635)
T ss_dssp EECTTSCCC-EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECTTSC
T ss_pred EEeeCCCCC-CCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECCCCc
Confidence 689999999 7887777999999999999999997778889999999999999999998888899999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC-------CCCCCCEEEccCCcccccCCccccCCCCC----cEEEccCccccc
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKL----SILGIRTNSFSG 149 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L----~~L~l~~~~i~~ 149 (508)
+.+..+..|+++++|++|++++|.+... .+++|++|++++|++++..+..+..+.++ ..++++.|.+..
T Consensus 136 l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~ 215 (635)
T 4g8a_A 136 LASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF 215 (635)
T ss_dssp CCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCE
T ss_pred CCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccc
Confidence 9977777899999999999999998764 46899999999999987777766554433 356677666654
Q ss_pred ccChhhcCCCCCCEEeCCCCcCc-------------------------C------CC-CCC-------------------
Q 045861 150 TIPSTIANLRNLQWLDLSFNYLT-------------------------S------ST-SEL------------------- 178 (508)
Q Consensus 150 ~~~~~~~~l~~L~~L~l~~n~~~-------------------------~------~~-~~~------------------- 178 (508)
..+..+. ...++.+++.+|... . .. ...
T Consensus 216 i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~ 294 (635)
T 4g8a_A 216 IQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYY 294 (635)
T ss_dssp ECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSC
T ss_pred cCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhccc
Confidence 3332221 112222222222100 0 00 000
Q ss_pred --cccc----------------------cccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhh
Q 045861 179 --SFLS----------------------SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234 (508)
Q Consensus 179 --~~~~----------------------~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~ 234 (508)
.... .+.....++.|++.++.+....... ...++.+.+..+..... ....
T Consensus 295 ~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~----l~~L~~l~l~~n~~~~~--~~~~ 368 (635)
T 4g8a_A 295 LDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK----LKSLKRLTFTSNKGGNA--FSEV 368 (635)
T ss_dssp EEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCB----CTTCCEEEEESCCSCCB--CCCC
T ss_pred ccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCccc----chhhhhcccccccCCCC--cccc
Confidence 0001 1222233444444444433222211 12445555554443322 2244
Q ss_pred cCCCCcEEEcccCcccc--ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCC-cccCCCCCC
Q 045861 235 NLINLITMSLGINKLTG--SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP-ACIGKLSPL 311 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~-~~~~~~~~L 311 (508)
.+++|+.++++.|.+.. ..+..+..+.+|+++++..+... ..+..+..+++|+.+++..+......+ ..+..++++
T Consensus 369 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l 447 (635)
T 4g8a_A 369 DLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 447 (635)
T ss_dssp BCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTC
T ss_pred cccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhcccccccccccccccccc
Confidence 68899999999998753 35566778899999999999877 445668889999999999987765443 557889999
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCcc-ccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSL-NGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l-~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
+.++++.|.+....+..+..++++++|++++|.+ ....|..+..+++|++|++++|++++..|..|.++++|++|+|++
T Consensus 448 ~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~ 527 (635)
T 4g8a_A 448 IYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSH 527 (635)
T ss_dssp CEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTT
T ss_pred ccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHHHcCCCCCCEEECCC
Confidence 9999999999999999999999999999999975 445788899999999999999999988899999999999999999
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCC-CCCCEEeCCCCcceecCCCc
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL-LYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~ 448 (508)
|++++..+..|.++++|++|++++|++++..|+.+..+ ++|++|++++|++.+.+...
T Consensus 528 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 528 NNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp SCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 99998888899999999999999999999999999988 68999999999999766643
|
| >3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.2e-42 Score=350.76 Aligned_cols=434 Identities=20% Similarity=0.225 Sum_probs=344.9
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .++...|.++++|++|++++|.+++..|..|.++++|++|++++|+++. +|.. .+++|++|++++|+
T Consensus 57 L~Ls~N~i~-~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~--~l~~L~~L~Ls~N~ 132 (562)
T 3a79_B 57 LSLSQNSIS-ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRLQN-ISCC--PMASLRHLDLSFND 132 (562)
T ss_dssp EECCSSCCC-CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTSCCCE-ECSC--CCTTCSEEECCSSC
T ss_pred EECCCCCcc-ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCCcCCc-cCcc--ccccCCEEECCCCC
Confidence 589999999 5665555999999999999999998888999999999999999999985 4444 89999999999999
Q ss_pred cccC-CchhccCCCCCCEeeCccccCCCC---CCCCC--CEEEccCCcc--cccCCccccCCC-CCcEEEccCccccccc
Q 045861 81 LIGE-IPHEIGNLHNLEYLVLENNNFDGP---RHSNL--ERLYLERNNF--SGTIPSFIFNAS-KLSILGIRTNSFSGTI 151 (508)
Q Consensus 81 l~~~-~~~~~~~l~~L~~L~L~~n~~~~~---~~~~L--~~L~l~~~~~--~~~~~~~~~~l~-~L~~L~l~~~~i~~~~ 151 (508)
+.+. .|..|+++++|++|++++|.+... .+++| ++|++++|.+ ++..+..+..+. ..-.+++++|.+.+.+
T Consensus 133 l~~l~~p~~~~~l~~L~~L~L~~n~l~~~~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~ 212 (562)
T 3a79_B 133 FDVLPVCKEFGNLTKLTFLGLSAAKFRQLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQ 212 (562)
T ss_dssp CSBCCCCGGGGGCTTCCEEEEECSBCCTTTTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEEEEECSSSCCCCC
T ss_pred ccccCchHhhcccCcccEEecCCCccccCchhhhhhceeeEEEeecccccccccCcccccccCcceEEEEecCccchhhh
Confidence 9863 468999999999999999998765 34455 9999999999 777888877654 1225678888877655
Q ss_pred Ch-hhcCCCCCCEEeCCCCcCcC--CCCCCcccccccCCCCCCEEEccCccCccCCChhhhh--cccccCeeEccCCcCc
Q 045861 152 PS-TIANLRNLQWLDLSFNYLTS--STSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGN--LSTSLEYIYMPYCRRS 226 (508)
Q Consensus 152 ~~-~~~~l~~L~~L~l~~n~~~~--~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~--~~~~L~~L~l~~~~~~ 226 (508)
+. .+..+++|+.+++++|.... .+ .....+..++.|+.+++.++.+.+.....+.. ...+|++|++++|.+.
T Consensus 213 ~~~~~~~l~~L~~L~l~~n~~~~~~l~---~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~ 289 (562)
T 3a79_B 213 VNMSVNALGHLQLSNIKLNDENCQRLM---TFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTIT 289 (562)
T ss_dssp CEEEESSEEEEEEEEEECCSTTHHHHH---HHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEEC
T ss_pred hhhcccccceEEEecccccccccchHH---HHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEee
Confidence 44 35678899999999885211 11 12245677888999999887766432111111 1138999999999999
Q ss_pred ccCChhh-----hcCCCCcEEEcccCccccccC-cccc---CCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCcee
Q 045861 227 GRIPEEI-----GNLINLITMSLGINKLTGSIP-ISLG---KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKL 297 (508)
Q Consensus 227 ~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~-~~l~---~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 297 (508)
+.+|..+ ..+..|+.+++..+.+ .+| ..+. ...+|++|++++|.+.... ....+++|++|++++|.+
T Consensus 290 ~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l 365 (562)
T 3a79_B 290 ERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVF 365 (562)
T ss_dssp SCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCC
T ss_pred ccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCcc
Confidence 8888776 5566666666666655 233 2222 2367999999999986432 126889999999999999
Q ss_pred eeeCCcccCCCCCCCEEEcCCCcccccC--CccccCccCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccc
Q 045861 298 FGSIPACIGKLSPLRNLLLHSNVLTYVI--PSTFLSLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIP 374 (508)
Q Consensus 298 ~~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~ 374 (508)
.+..+..+..+++|++|++++|.+.+.. +..+..+++|++|++++|.+++.+| ..+..+++|++|++++|++++..+
T Consensus 366 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~ 445 (562)
T 3a79_B 366 TDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVF 445 (562)
T ss_dssp CTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGG
T ss_pred ccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchh
Confidence 8888899999999999999999998754 3568899999999999999997444 458889999999999999987665
Q ss_pred hhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 375 TVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 375 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
..+. ++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|..
T Consensus 446 ~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 446 RCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp SSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 5433 79999999999998 67776779999999999999999655555999999999999999999776654
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-40 Score=329.60 Aligned_cols=140 Identities=21% Similarity=0.247 Sum_probs=105.6
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 388 (508)
++|+.|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 275 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 354 (455)
T 3v47_A 275 SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDL 354 (455)
T ss_dssp SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEEC
T ss_pred cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEEC
Confidence 56777777777777666666777777777777777777666667777777777777777777666777777788888888
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
++|.+++..|..|..+++|++|++++|++++..++.+..+++|++|++++|++.+.+|..
T Consensus 355 s~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 414 (455)
T 3v47_A 355 SYNHIRALGDQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 414 (455)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTT
T ss_pred CCCcccccChhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcc
Confidence 888887766777777888888888888887766666777788888888888887766643
|
| >3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-40 Score=328.20 Aligned_cols=378 Identities=21% Similarity=0.252 Sum_probs=257.5
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCC-CCCcccCCCCCCCeEEccCCc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG-LIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+.++++++ .+|. + .++|++|++++|.+++..+..|..+++|++|++++|.+.+ ..+..|.++++|++|++++|+
T Consensus 16 ~c~~~~l~-~lp~-l---~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~ 90 (455)
T 3v47_A 16 ICINRGLH-QVPE-L---PAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90 (455)
T ss_dssp ECCSSCCS-SCCC-C---CTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCT
T ss_pred CcCCCCcc-cCCC-C---CCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCc
Confidence 45666776 6675 3 3678888888888876667777888888888888877753 445667778888888888887
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCC--ccccCCCCCcEEEccCcccccccChh-hcC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIP--SFIFNASKLSILGIRTNSFSGTIPST-IAN 157 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~~~~~-~~~ 157 (508)
+.+..|..|.++++|++|++++|.+.+ ..+ ..+..+++|++|++++|.+.+..|.. +..
T Consensus 91 l~~~~~~~~~~l~~L~~L~L~~n~l~~------------------~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~ 152 (455)
T 3v47_A 91 FLQLETGAFNGLANLEVLTLTQCNLDG------------------AVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLN 152 (455)
T ss_dssp TCEECTTTTTTCTTCCEEECTTSCCBT------------------HHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGG
T ss_pred cCccChhhccCcccCCEEeCCCCCCCc------------------cccCcccccCcccCCEEECCCCccCccCcccccCC
Confidence 776667777778888877777776652 111 12445555555555555555444443 455
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCC--CCCCEEEccCccCccCCChhhh--------hcccccCeeEccCCcCcc
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNC--RNLKVIDLTGNQLHGILPSSMG--------NLSTSLEYIYMPYCRRSG 227 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~--~~L~~L~l~~~~~~~~~~~~~~--------~~~~~L~~L~l~~~~~~~ 227 (508)
+++|++|++++|.+...... .+..+ .+|+.++++++.+.+..+..+. .. ++|++|++++|.+.+
T Consensus 153 l~~L~~L~L~~n~l~~~~~~-----~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~-~~L~~L~Ls~n~l~~ 226 (455)
T 3v47_A 153 MRRFHVLDLTFNKVKSICEE-----DLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKN-TSITTLDLSGNGFKE 226 (455)
T ss_dssp CTTCCEEECTTCCBSCCCTT-----TSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTT-CEEEEEECTTSCCCH
T ss_pred CCcccEEeCCCCcccccChh-----hhhccccccccccccccCcccccchhhcccccccccccc-ceeeeEecCCCcccc
Confidence 55555555555555443221 11111 3455555555554433222211 11 144555555554444
Q ss_pred cCChhhhcC---CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhh--CCCCCcEEEeeCceeeeeCC
Q 045861 228 RIPEEIGNL---INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC--NLGRLVELQFYDNKLFGSIP 302 (508)
Q Consensus 228 ~~~~~l~~l---~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~L~~n~~~~~~~ 302 (508)
..|..+... .+|+.+++++|...+... ..+.+.+.....+. ..++|++|++++|.+.+..+
T Consensus 227 ~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 292 (455)
T 3v47_A 227 SMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLK 292 (455)
T ss_dssp HHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECT
T ss_pred cchhhhhccccccceeeEeecccccccccc--------------chhhhccCcccccccccccCceEEEecCccccccch
Confidence 444333322 455566665554432110 01111111111222 24689999999999988888
Q ss_pred cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCC
Q 045861 303 ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSN 382 (508)
Q Consensus 303 ~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~ 382 (508)
..+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|..|..+++
T Consensus 293 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~ 372 (455)
T 3v47_A 293 SVFSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPN 372 (455)
T ss_dssp TTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTT
T ss_pred hhcccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccc
Confidence 88999999999999999999888888999999999999999999888888999999999999999999888889999999
Q ss_pred CCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCc
Q 045861 383 LAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 383 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~ 422 (508)
|++|++++|++++..+..+..+++|+.|++++|++++..|
T Consensus 373 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 373 LKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp CCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred ccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 9999999999997767778999999999999999997655
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-38 Score=316.00 Aligned_cols=391 Identities=24% Similarity=0.300 Sum_probs=158.2
Q ss_pred CCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCC-------------CeEEccCCccccCCch
Q 045861 21 PRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSA-------------RALLLGNNNLIGEIPH 87 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L-------------~~L~L~~n~l~~~~~~ 87 (508)
.+|++|++++|.+ +.+|..+.++++|++|++++|++.+..|..++++.+| ++|++++|.+.+ +|.
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~-lp~ 88 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSS-LPE 88 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSC-CCS
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCcccc-CCC
Confidence 4445555555554 3444445555555555555554444444444444432 455555554442 222
Q ss_pred hccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEe
Q 045861 88 EIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165 (508)
Q Consensus 88 ~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 165 (508)
. .++|++|++++|.++++ ..++|++|++++|++++ ++.. .++|++|++++|++++ +| .|+.+++|++|+
T Consensus 89 ~---~~~L~~L~l~~n~l~~lp~~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~ 159 (454)
T 1jl5_A 89 L---PPHLESLVASCNSLTELPELPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-LP-ELQNSSFLKIID 159 (454)
T ss_dssp C---CTTCSEEECCSSCCSSCCCCCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEE
T ss_pred C---cCCCCEEEccCCcCCccccccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEE
Confidence 1 23455555555544443 22445555555554442 1111 1355555555555543 33 355555555555
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcc
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 245 (508)
+++|.+..++.. ..+|++|++++|.+++ .| .+..++ +|++|++++|.+.+ +|.. .++|++|+++
T Consensus 160 l~~N~l~~lp~~---------~~~L~~L~L~~n~l~~-l~-~~~~l~-~L~~L~l~~N~l~~-l~~~---~~~L~~L~l~ 223 (454)
T 1jl5_A 160 VDNNSLKKLPDL---------PPSLEFIAAGNNQLEE-LP-ELQNLP-FLTAIYADNNSLKK-LPDL---PLSLESIVAG 223 (454)
T ss_dssp CCSSCCSCCCCC---------CTTCCEEECCSSCCSS-CC-CCTTCT-TCCEEECCSSCCSS-CCCC---CTTCCEEECC
T ss_pred CCCCcCcccCCC---------cccccEEECcCCcCCc-Cc-cccCCC-CCCEEECCCCcCCc-CCCC---cCcccEEECc
Confidence 555554443221 1245555555555543 22 233333 55555555555443 2211 1355555555
Q ss_pred cCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccC
Q 045861 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325 (508)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 325 (508)
+|.+. .+| .++.+++|++|++++|.+.+ ++. ..++|++|++++|.+.+ ++.. .++|+.|++++|.+++..
T Consensus 224 ~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l~ 293 (454)
T 1jl5_A 224 NNILE-ELP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGLS 293 (454)
T ss_dssp SSCCS-SCC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEES
T ss_pred CCcCC-ccc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCccc
Confidence 55555 333 25555555555555555552 222 12455566665555543 2221 255666666666555432
Q ss_pred CccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCC
Q 045861 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405 (508)
Q Consensus 326 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (508)
. ..++|++|++++|.+++ ++. ..++|++|++++|++.+ +|.. +++|++|++++|.++ .+|. .++
T Consensus 294 ~----~~~~L~~L~l~~N~l~~-i~~---~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~ 357 (454)
T 1jl5_A 294 E----LPPNLYYLNASSNEIRS-LCD---LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQ 357 (454)
T ss_dssp C----CCTTCCEEECCSSCCSE-ECC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCT
T ss_pred C----cCCcCCEEECcCCcCCc-ccC---CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhh
Confidence 1 11456666666665553 111 11356666666666653 3322 456666666666665 3443 245
Q ss_pred CCCEEECCCCcccc--cCcccccCC-------------CCCCEEeCCCCccee--cCCCccccCCCCcccccCCCCCCCC
Q 045861 406 SLEFLDLSNNSFSG--FIPRSFEKL-------------LYLEYLNLSFNRLKG--EIPSGESFANFSDNSFMGNSFLCGS 468 (508)
Q Consensus 406 ~L~~L~L~~n~~~~--~~~~~l~~l-------------~~L~~L~l~~n~l~~--~~p~~~~~~~l~~l~l~~n~~~c~~ 468 (508)
+|++|++++|++++ .+|.++..+ ++|++|++++|++++ .+|. ++..+.+.+|.+.|.-
T Consensus 358 ~L~~L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP~-----sl~~L~~~~~~~~~~~ 432 (454)
T 1jl5_A 358 NLKQLHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIPE-----SVEDLRMNSERVVDPY 432 (454)
T ss_dssp TCCEEECCSSCCSSCCCCCTTCCEEECCC---------------------------------------------------
T ss_pred hccEEECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccchh-----hHhheeCcCcccCCcc
Confidence 66666666666665 445555444 789999999999986 4543 4666777777665543
Q ss_pred C
Q 045861 469 P 469 (508)
Q Consensus 469 ~ 469 (508)
|
T Consensus 433 ~ 433 (454)
T 1jl5_A 433 E 433 (454)
T ss_dssp -
T ss_pred c
Confidence 3
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.8e-36 Score=303.97 Aligned_cols=356 Identities=28% Similarity=0.416 Sum_probs=238.3
Q ss_pred CCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045861 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI 85 (508)
Q Consensus 6 n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 85 (508)
+.+.+.++.. .+++++.|+++++.+. .++ .+..+++|++|++++|.+++..+ +.++++|++|++++|++.+..
T Consensus 34 ~~~~~~i~~~---~l~~l~~L~l~~~~i~-~l~-~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 106 (466)
T 1o6v_A 34 TNVTDTVSQT---DLDQVTTLQADRLGIK-SID-GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT 106 (466)
T ss_dssp SSTTSEECHH---HHHTCCEEECCSSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG
T ss_pred cccccccChh---HhccccEEecCCCCCc-cCc-chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccCh
Confidence 3444444432 2567888888888877 344 37778888888888888875533 788888888888888887443
Q ss_pred chhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEe
Q 045861 86 PHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165 (508)
Q Consensus 86 ~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 165 (508)
+ +.++++|++|++++|.+. ..+ .+..+++|++|++++|.+.. ++ .+..+++|++|+
T Consensus 107 ~--~~~l~~L~~L~L~~n~l~-------------------~~~-~~~~l~~L~~L~l~~n~l~~-~~-~~~~l~~L~~L~ 162 (466)
T 1o6v_A 107 P--LANLTNLTGLTLFNNQIT-------------------DID-PLKNLTNLNRLELSSNTISD-IS-ALSGLTSLQQLS 162 (466)
T ss_dssp G--GTTCTTCCEEECCSSCCC-------------------CCG-GGTTCTTCSEEEEEEEEECC-CG-GGTTCTTCSEEE
T ss_pred h--hcCCCCCCEEECCCCCCC-------------------CCh-HHcCCCCCCEEECCCCccCC-Ch-hhccCCcccEee
Confidence 3 778888888888877765 222 26777888888888887764 22 477788888888
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcc
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 245 (508)
+++ .+... ..+..+++|+.|++++|.+... . .+..+++|++|+++
T Consensus 163 l~~-~~~~~-------~~~~~l~~L~~L~l~~n~l~~~--~-------------------------~l~~l~~L~~L~l~ 207 (466)
T 1o6v_A 163 FGN-QVTDL-------KPLANLTTLERLDISSNKVSDI--S-------------------------VLAKLTNLESLIAT 207 (466)
T ss_dssp EEE-SCCCC-------GGGTTCTTCCEEECCSSCCCCC--G-------------------------GGGGCTTCSEEECC
T ss_pred cCC-cccCc-------hhhccCCCCCEEECcCCcCCCC--h-------------------------hhccCCCCCEEEec
Confidence 753 22221 2366677777777777766532 1 13344555555555
Q ss_pred cCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccC
Q 045861 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325 (508)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 325 (508)
+|.+.+..+ ++.+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+ +..+++|+.|++++|.+.+..
T Consensus 208 ~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~ 281 (466)
T 1o6v_A 208 NNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS 281 (466)
T ss_dssp SSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCG
T ss_pred CCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCccc
Confidence 555543332 44455666666666655532 245566666666666666653332 566667777777777666543
Q ss_pred CccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCC
Q 045861 326 PSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405 (508)
Q Consensus 326 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 405 (508)
+ +..+++|++|++++|++++..+ +..+++|+.|++++|++.+..+ +..+++|++|++++|.+++. ..+..++
T Consensus 282 ~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~ 353 (466)
T 1o6v_A 282 P--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLT 353 (466)
T ss_dssp G--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCT
T ss_pred c--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCC
Confidence 3 6667777777777777765433 5677778888888887776544 66778888888888887754 4577778
Q ss_pred CCCEEECCCCcccccCcccccCCCCCCEEeCCCCccee
Q 045861 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 406 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
+|+.|++++|++++..| +..+++|+.|++++|++++
T Consensus 354 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 354 NINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp TCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred CCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence 88888888888877665 7777888888888888774
|
| >1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-37 Score=308.98 Aligned_cols=388 Identities=24% Similarity=0.271 Sum_probs=274.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCC-------------cEEEcccCCCCCCCCcccCC
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQEL-------------IAISLSHNQLTGLIPRDIGN 67 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L-------------~~L~L~~n~l~~~~~~~~~~ 67 (508)
|++++|++ |++|..+ +++++|++|++++|.+.+.+|..+..+.+| ++|++++|.+++. |..
T Consensus 16 L~l~~n~l-~~iP~~i-~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~~~l~~L~l~~~~l~~l-p~~--- 89 (454)
T 1jl5_A 16 PLRHSSNL-TEMPVEA-ENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLDRQAHELELNNLGLSSL-PEL--- 89 (454)
T ss_dssp --------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHHHTCSEEECTTSCCSCC-CSC---
T ss_pred hhcccCch-hhCChhH-hcccchhhhhccCCcccccCCcccccchhcchhhhhhhhccCCCEEEecCCccccC-CCC---
Confidence 57889999 6999987 999999999999999998999999888764 9999999999854 432
Q ss_pred CCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCc
Q 045861 68 LTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTN 145 (508)
Q Consensus 68 l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~ 145 (508)
.++|++|++++|.+.+ +|.. +++|++|++++|.+.++ ..++|++|++++|++++ +| .+.++++|++|++++|
T Consensus 90 ~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l~~~~~~L~~L~L~~n~l~~-lp-~~~~l~~L~~L~l~~N 163 (454)
T 1jl5_A 90 PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEK-LP-ELQNSSFLKIIDVDNN 163 (454)
T ss_dssp CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCCCSCCTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSS
T ss_pred cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcccCCCCCCCEEECcCCCCCC-Cc-ccCCCCCCCEEECCCC
Confidence 4789999999999985 6643 48999999999999876 23699999999999985 66 6999999999999999
Q ss_pred ccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcC
Q 045861 146 SFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225 (508)
Q Consensus 146 ~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~ 225 (508)
++++ +|.. ..+|++|++++|.+..++ .+..+++|+.|++++|.+++. |. .+++|++|++++|.+
T Consensus 164 ~l~~-lp~~---~~~L~~L~L~~n~l~~l~-------~~~~l~~L~~L~l~~N~l~~l-~~----~~~~L~~L~l~~n~l 227 (454)
T 1jl5_A 164 SLKK-LPDL---PPSLEFIAAGNNQLEELP-------ELQNLPFLTAIYADNNSLKKL-PD----LPLSLESIVAGNNIL 227 (454)
T ss_dssp CCSC-CCCC---CTTCCEEECCSSCCSSCC-------CCTTCTTCCEEECCSSCCSSC-CC----CCTTCCEEECCSSCC
T ss_pred cCcc-cCCC---cccccEEECcCCcCCcCc-------cccCCCCCCEEECCCCcCCcC-CC----CcCcccEEECcCCcC
Confidence 9984 5543 369999999999987743 377899999999999998863 32 234999999999988
Q ss_pred cccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCccc
Q 045861 226 SGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI 305 (508)
Q Consensus 226 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~ 305 (508)
. .+|. +..+++|++|++++|.+.+ +|. .+++|++|++++|.+.+ ++.. .++|++|++++|.+.+. +.
T Consensus 228 ~-~lp~-~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~l-~~-- 294 (454)
T 1jl5_A 228 E-ELPE-LQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSGL-SE-- 294 (454)
T ss_dssp S-SCCC-CTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSEE-SC--
T ss_pred C-cccc-cCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCcc-cC--
Confidence 7 5664 8899999999999999985 443 34899999999999985 4433 47899999999998753 21
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCE
Q 045861 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAF 385 (508)
Q Consensus 306 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 385 (508)
..++|+.|++++|.+++... ..++|++|++++|++++ +|.. +++|++|++++|.+++ +|. .+++|++
T Consensus 295 -~~~~L~~L~l~~N~l~~i~~----~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~~-lp~---~l~~L~~ 361 (454)
T 1jl5_A 295 -LPPNLYYLNASSNEIRSLCD----LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLAE-VPE---LPQNLKQ 361 (454)
T ss_dssp -CCTTCCEEECCSSCCSEECC----CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCCE
T ss_pred -cCCcCCEEECcCCcCCcccC----CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCcccc-ccc---hhhhccE
Confidence 12799999999999986431 23689999999999995 5543 5899999999999994 565 4789999
Q ss_pred EECcCCcccc--cCcccccCC-------------CCCCEEECCCCcccc--cCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 386 FSLAYNKLQG--SIPESLGDL-------------RSLEFLDLSNNSFSG--FIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 386 L~L~~n~l~~--~~~~~~~~l-------------~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
|++++|.+++ .+|..+..+ ++|+.|++++|++++ .+| ++++.|.+.+|.+.+.+|..
T Consensus 362 L~L~~N~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~l~~~~~iP------~sl~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 362 LHVEYNPLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNPLREFPDIP------ESVEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp EECCSSCCSSCCCCCTTCCEEECCC-------------------------------------------------------
T ss_pred EECCCCCCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCcCCccccch------hhHhheeCcCcccCCccccC
Confidence 9999999997 677788777 889999999999996 333 34778889999988665543
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.4e-37 Score=310.67 Aligned_cols=329 Identities=20% Similarity=0.185 Sum_probs=243.4
Q ss_pred CCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhccccc
Q 045861 136 KLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSL 215 (508)
Q Consensus 136 ~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L 215 (508)
++++|++++|++++..+..|..+++|++|++++|.+..+.. ..|.++++|++|++++|.++...+..+...+ +|
T Consensus 33 ~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L 106 (477)
T 2id5_A 33 ETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEP-----GAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS-NL 106 (477)
T ss_dssp TCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCSCCTTSSTTCT-TC
T ss_pred CCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeCh-----hhhhCCccCCEEECCCCcCCccCcccccCCC-CC
Confidence 44555555555544444445555555555555554443221 2344445555555555555443333333333 55
Q ss_pred CeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc
Q 045861 216 EYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295 (508)
Q Consensus 216 ~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 295 (508)
++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|.+++..+..+..+++|+.|++++|
T Consensus 107 ~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n 186 (477)
T 2id5_A 107 TKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHL 186 (477)
T ss_dssp CEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEESC
T ss_pred CEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCCCC
Confidence 55555555555555666777888888888888888777778888888899999888888766677888899999999999
Q ss_pred eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch
Q 045861 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375 (508)
Q Consensus 296 ~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 375 (508)
.+.+..+..+..+++|+.|++++|......+.......+|++|++++|.++...+..+..+++|+.|++++|.+.+..+.
T Consensus 187 ~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 266 (477)
T 2id5_A 187 NINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGS 266 (477)
T ss_dssp CCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTT
T ss_pred cCcEeChhhcccCcccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChh
Confidence 88877777888889999999998877666665555666899999999999855556788899999999999999977777
Q ss_pred hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCC
Q 045861 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFS 455 (508)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~ 455 (508)
.|..+++|++|++++|.+++..+..|..+++|+.|++++|++++..+..|..+++|++|++++|++.+..+....+....
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~ 346 (477)
T 2id5_A 267 MLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRW 346 (477)
T ss_dssp SCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTT
T ss_pred hccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhh
Confidence 88899999999999999998888889999999999999999998887888899999999999999986555444444555
Q ss_pred cccccCCCCCCCCCC
Q 045861 456 DNSFMGNSFLCGSPN 470 (508)
Q Consensus 456 ~l~l~~n~~~c~~~~ 470 (508)
.+.+.++...|.+|.
T Consensus 347 ~~~~~~~~~~C~~p~ 361 (477)
T 2id5_A 347 RLNFNRQQPTCATPE 361 (477)
T ss_dssp SSCCTTCCCBEEESG
T ss_pred ccccCccCceeCCch
Confidence 567788888887763
|
| >1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-35 Score=295.75 Aligned_cols=339 Identities=27% Similarity=0.397 Sum_probs=219.2
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|+++++++. .+|. +..+++|++|++++|.+.+.. . +..+++|++|++++|.+.+..+ ++++++|++|++++|.
T Consensus 51 L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~-~-~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~ 123 (466)
T 1o6v_A 51 LQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDIT-P-LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQ 123 (466)
T ss_dssp EECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCch-h-hhccccCCEEECCCCccccChh--hcCCCCCCEEECCCCC
Confidence 467889988 6774 478999999999999998554 3 8999999999999999986644 9999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRN 160 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~ 160 (508)
+.+. + .+.++++|++|++++|.+.. . ..+..+++|++|++. +.+... ..+..+++
T Consensus 124 l~~~-~-~~~~l~~L~~L~l~~n~l~~-------------------~-~~~~~l~~L~~L~l~-~~~~~~--~~~~~l~~ 178 (466)
T 1o6v_A 124 ITDI-D-PLKNLTNLNRLELSSNTISD-------------------I-SALSGLTSLQQLSFG-NQVTDL--KPLANLTT 178 (466)
T ss_dssp CCCC-G-GGTTCTTCSEEEEEEEEECC-------------------C-GGGTTCTTCSEEEEE-ESCCCC--GGGTTCTT
T ss_pred CCCC-h-HHcCCCCCCEEECCCCccCC-------------------C-hhhccCCcccEeecC-CcccCc--hhhccCCC
Confidence 9854 3 38899999999999988762 2 246778888888886 344422 23778888
Q ss_pred CCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCc
Q 045861 161 LQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLI 240 (508)
Q Consensus 161 L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~ 240 (508)
|++|++++|.+..+ ..+..+++|+.|++++|.+.+..+ +..+ ++|+.|++++|.+.+. ..+..+++|+
T Consensus 179 L~~L~l~~n~l~~~-------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l-~~L~~L~l~~n~l~~~--~~l~~l~~L~ 246 (466)
T 1o6v_A 179 LERLDISSNKVSDI-------SVLAKLTNLESLIATNNQISDITP--LGIL-TNLDELSLNGNQLKDI--GTLASLTNLT 246 (466)
T ss_dssp CCEEECCSSCCCCC-------GGGGGCTTCSEEECCSSCCCCCGG--GGGC-TTCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred CCEEECcCCcCCCC-------hhhccCCCCCEEEecCCccccccc--cccc-CCCCEEECCCCCcccc--hhhhcCCCCC
Confidence 99999988887653 346677888888888887765433 2222 2555555555554432 2344555555
Q ss_pred EEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCc
Q 045861 241 TMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNV 320 (508)
Q Consensus 241 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 320 (508)
.|++++|.+.+..+ +..+++|++|++++|.+.+. .+ +..+++|+.|++++|.
T Consensus 247 ~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~------------------------~~--~~~l~~L~~L~L~~n~ 298 (466)
T 1o6v_A 247 DLDLANNQISNLAP--LSGLTKLTELKLGANQISNI------------------------SP--LAGLTALTNLELNENQ 298 (466)
T ss_dssp EEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCC------------------------GG--GTTCTTCSEEECCSSC
T ss_pred EEECCCCccccchh--hhcCCCCCEEECCCCccCcc------------------------cc--ccCCCccCeEEcCCCc
Confidence 55555555543222 44445555555555544432 11 3444455555555554
Q ss_pred ccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCccc
Q 045861 321 LTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
+.+..+ +..+++|++|++++|.+++..+ +..+++|+.|++++|++.+. ..+..+++|++|++++|++++..|
T Consensus 299 l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~-- 370 (466)
T 1o6v_A 299 LEDISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370 (466)
T ss_dssp CSCCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--
T ss_pred ccCchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--
Confidence 443322 4455555555555555554333 44555666666666665543 245556666666666666654443
Q ss_pred ccCCCCCCEEECCCCcccc
Q 045861 401 LGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~ 419 (508)
+..+++|+.|++++|.+++
T Consensus 371 ~~~l~~L~~L~l~~n~~~~ 389 (466)
T 1o6v_A 371 LANLTRITQLGLNDQAWTN 389 (466)
T ss_dssp GTTCTTCCEEECCCEEEEC
T ss_pred hhcCCCCCEEeccCCcccC
Confidence 5556666666666666654
|
| >2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.5e-36 Score=301.28 Aligned_cols=321 Identities=19% Similarity=0.154 Sum_probs=200.0
Q ss_pred cEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccc
Q 045861 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENN 103 (508)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 103 (508)
+.++.+++.++ .+|..+ .+++++|++++|++++..+..|.++++|++|+|++|.+.+..|.+|.++++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n 90 (477)
T 2id5_A 14 RAVLCHRKRFV-AVPEGI--PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSN 90 (477)
T ss_dssp TEEECCSCCCS-SCCSCC--CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcC-cCCCCC--CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCC
Confidence 45566666555 344433 245666666666666555566666666666666666666555666666666666666666
Q ss_pred cCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccccc
Q 045861 104 NFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS 183 (508)
Q Consensus 104 ~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~ 183 (508)
.+.. ..+..+.++++|++|++++|++....+..|..+++|++|++++|.+..+.. ..
T Consensus 91 ~l~~------------------~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-----~~ 147 (477)
T 2id5_A 91 RLKL------------------IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISH-----RA 147 (477)
T ss_dssp CCCS------------------CCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECT-----TS
T ss_pred cCCc------------------cCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccceeCh-----hh
Confidence 5542 112234445555555555555554445555555555555555555444322 23
Q ss_pred ccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCC
Q 045861 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKL 263 (508)
Q Consensus 184 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L 263 (508)
|..+++|+.|++++|.+++..+..+...+ +|+.|++++|.+.+..+..+..+++|+.|++++|...+..+.......+|
T Consensus 148 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L 226 (477)
T 2id5_A 148 FSGLNSLEQLTLEKCNLTSIPTEALSHLH-GLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNL 226 (477)
T ss_dssp STTCTTCCEEEEESCCCSSCCHHHHTTCT-TCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCC
T ss_pred ccCCCCCCEEECCCCcCcccChhHhcccC-CCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCccc
Confidence 44555555555555555544444444443 56666666655555555556667777777777766655555555555677
Q ss_pred CcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..|..+++|++|++++|
T Consensus 227 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N 306 (477)
T 2id5_A 227 TSLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGN 306 (477)
T ss_dssp SEEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSS
T ss_pred cEEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCC
Confidence 77777777777544456777777777777777777666667777777777777777777777777777777777777777
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCC
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSD 371 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 371 (508)
.+++..+..+..+++|++|++++|++..
T Consensus 307 ~l~~~~~~~~~~l~~L~~L~l~~N~l~c 334 (477)
T 2id5_A 307 QLTTLEESVFHSVGNLETLILDSNPLAC 334 (477)
T ss_dssp CCSCCCGGGBSCGGGCCEEECCSSCEEC
T ss_pred cCceeCHhHcCCCcccCEEEccCCCccC
Confidence 7776666666777777778887777764
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-35 Score=293.28 Aligned_cols=342 Identities=20% Similarity=0.231 Sum_probs=205.0
Q ss_pred hCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
.++++|++|++++|.+++. | .+..+++|++|++++|++++. | ++.+++|++|++++|++.+. + ++++++|++
T Consensus 39 ~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~ 110 (457)
T 3bz5_A 39 EQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTY 110 (457)
T ss_dssp HHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCE
T ss_pred hHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCE
Confidence 6788999999999998854 5 588899999999999998865 3 88889999999999988853 3 788888999
Q ss_pred eeCccccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCC
Q 045861 98 LVLENNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 98 L~L~~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
|++++|.++.+ .+++|++|++++|++++. .+..+++|++|++++|...+.+ .+..+++|++|++++|.+..+
T Consensus 111 L~L~~N~l~~l~~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 111 LNCDTNKLTKLDVSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp EECCSSCCSCCCCTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred EECCCCcCCeecCCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 88888887754 344555555555555432 2445555555555555332222 244455555555555554432
Q ss_pred CCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC
Q 045861 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP 254 (508)
Q Consensus 175 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 254 (508)
+ +..+++|+.|++++|.+++. .+..+++|+.|++++|.+++ +|
T Consensus 186 ~--------l~~l~~L~~L~l~~N~l~~~----------------------------~l~~l~~L~~L~Ls~N~l~~-ip 228 (457)
T 3bz5_A 186 D--------VSQNKLLNRLNCDTNNITKL----------------------------DLNQNIQLTFLDCSSNKLTE-ID 228 (457)
T ss_dssp C--------CTTCTTCCEEECCSSCCSCC----------------------------CCTTCTTCSEEECCSSCCSC-CC
T ss_pred c--------cccCCCCCEEECcCCcCCee----------------------------ccccCCCCCEEECcCCcccc-cC
Confidence 1 33444555555555554432 13444555555555555543 22
Q ss_pred ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE----------EeeCceeeeeCCcccCCCCCCCEEEcCCCccccc
Q 045861 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL----------QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYV 324 (508)
Q Consensus 255 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L----------~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~ 324 (508)
++.+++|++|++++|.+++.. +..+++|+.| ++++|...+.+| +..+++|+.|++++|...+.
T Consensus 229 --~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~ 301 (457)
T 3bz5_A 229 --VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYL 301 (457)
T ss_dssp --CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCE
T ss_pred --ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccce
Confidence 444555555555555554322 2233344444 444443333332 23455555555555544333
Q ss_pred CCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCC
Q 045861 325 IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDL 404 (508)
Q Consensus 325 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l 404 (508)
.+. ...+|+.+++ ..+++|++|++++|++++. + +..+++|+.|++++|++++ +
T Consensus 302 l~~---~~~~L~~L~l-------------~~~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l 354 (457)
T 3bz5_A 302 LDC---QAAGITELDL-------------SQNPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------F 354 (457)
T ss_dssp EEC---TTCCCSCCCC-------------TTCTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------C
T ss_pred ecc---CCCcceEech-------------hhcccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------c
Confidence 221 1223333332 3335777777777777753 2 6677778888888877764 2
Q ss_pred CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 405 RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 405 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
+.|..|++++|.+.+. ..+..|..+++++|+++|.+|..
T Consensus 355 ~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 355 SSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp TTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 4556667777777754 23456778888888888888875
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-34 Score=281.35 Aligned_cols=333 Identities=18% Similarity=0.148 Sum_probs=202.0
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCC
Q 045861 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLK 191 (508)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~ 191 (508)
+++.|+++++.+....+..+..+++|++|++++|.+....+..|..+++|++|++++|.+..++. ..+..+++|+
T Consensus 46 ~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 120 (390)
T 3o6n_A 46 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLT 120 (390)
T ss_dssp CCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCH-----HHhcCCCCCC
Confidence 33344444444432223335566677777777777765555666677777777777776655432 3355666677
Q ss_pred EEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCC
Q 045861 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKN 271 (508)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 271 (508)
+|++++|.++...+..+...+ +|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+++++++|
T Consensus 121 ~L~L~~n~l~~l~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 121 VLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 196 (390)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEECCCCccCcCCHHHhcCCC-CCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeecccc
Confidence 777777666644333334443 666666666666655555566667777777777766643 2445666777777776
Q ss_pred cCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc
Q 045861 272 KLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351 (508)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 351 (508)
.+.. +...++|++|++++|.+..... ...++|+.|++++|.+++. ..+..+++|++|++++|.+++..+.
T Consensus 197 ~l~~-----~~~~~~L~~L~l~~n~l~~~~~---~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~ 266 (390)
T 3o6n_A 197 LLST-----LAIPIAVEELDASHNSINVVRG---PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 266 (390)
T ss_dssp CCSE-----EECCSSCSEEECCSSCCCEEEC---CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----cCCCCcceEEECCCCeeeeccc---cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChh
Confidence 6552 1233466777777776654322 2235677777777766643 3556667777777777777666666
Q ss_pred cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCC
Q 045861 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYL 431 (508)
Q Consensus 352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 431 (508)
.+..+++|++|++++|++++ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+++... +..+++|
T Consensus 267 ~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~~~~---~~~~~~L 341 (390)
T 3o6n_A 267 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 341 (390)
T ss_dssp GGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccceeC---chhhccC
Confidence 66777777777777777763 4444556677777777777776 45555666677777777777776432 5556667
Q ss_pred CEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 432 EYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 432 ~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
++|++++|++.+. .....+..+....+.+++..|.++
T Consensus 342 ~~L~l~~N~~~~~-~~~~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 342 KNLTLSHNDWDCN-SLRALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp SEEECCSSCEEHH-HHHHHTTTCCTTTBCCCCSCCCTT
T ss_pred CEEEcCCCCccch-hHHHHHHHHHhhcccccCceeccc
Confidence 7777777777632 222234555555666666666654
|
| >3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=100.00 E-value=5e-34 Score=283.87 Aligned_cols=347 Identities=19% Similarity=0.212 Sum_probs=282.6
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|++++ +| . |..+++|++|++++|.+++. + +..+++|++|++++|++++. + ++++++|++|++++|+
T Consensus 47 L~Ls~n~l~~-~~-~-l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L~~N~ 117 (457)
T 3bz5_A 47 LDCHNSSITD-MT-G-IEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNCDTNK 117 (457)
T ss_dssp EECCSSCCCC-CT-T-GGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEECCSSC
T ss_pred EEccCCCccc-Ch-h-hcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEECCCCc
Confidence 5899999994 56 4 48999999999999999964 4 88999999999999999975 3 8999999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIAN 157 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~ 157 (508)
+.+ ++ ++.+++|++|++++|.++++ .+++|++|++++|+..+.+ .+..+++|++|++++|++++ ++ ++.
T Consensus 118 l~~-l~--~~~l~~L~~L~l~~N~l~~l~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~-l~--l~~ 189 (457)
T 3bz5_A 118 LTK-LD--VSQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITE-LD--VSQ 189 (457)
T ss_dssp CSC-CC--CTTCTTCCEEECTTSCCSCCCCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCC-CC--CTT
T ss_pred CCe-ec--CCCCCcCCEEECCCCccceeccccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccce-ec--ccc
Confidence 985 44 89999999999999999876 5789999999999655454 57889999999999999986 44 788
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCC
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 237 (508)
+++|+.|++++|.+..+ .+..+++|+.|++++|.+++. | +...+ +|++|++++|.+.+.. ...++
T Consensus 190 l~~L~~L~l~~N~l~~~--------~l~~l~~L~~L~Ls~N~l~~i-p--~~~l~-~L~~L~l~~N~l~~~~---~~~l~ 254 (457)
T 3bz5_A 190 NKLLNRLNCDTNNITKL--------DLNQNIQLTFLDCSSNKLTEI-D--VTPLT-QLTYFDCSVNPLTELD---VSTLS 254 (457)
T ss_dssp CTTCCEEECCSSCCSCC--------CCTTCTTCSEEECCSSCCSCC-C--CTTCT-TCSEEECCSSCCSCCC---CTTCT
T ss_pred CCCCCEEECcCCcCCee--------ccccCCCCCEEECcCCccccc-C--ccccC-CCCEEEeeCCcCCCcC---HHHCC
Confidence 99999999999998864 267889999999999999874 4 55554 8999999999888754 45677
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+|+.++++.+ +|+.|++++|.+.+.+| +..+++|+.|++++|...+.++. ..++|+.|+++
T Consensus 255 ~L~~L~l~~n--------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~ 315 (457)
T 3bz5_A 255 KLTTLHCIQT--------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLS 315 (457)
T ss_dssp TCCEEECTTC--------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCT
T ss_pred CCCEEeccCC--------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechh
Confidence 8888887654 46678888888766655 46788999999999976655553 34566666665
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+| ++|++|++++|++++. .+..+++|+.|++++|++.+ ++.|..|.+++|.+.+.
T Consensus 316 ~~-------------~~L~~L~L~~N~l~~l---~l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~- 370 (457)
T 3bz5_A 316 QN-------------PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE- 370 (457)
T ss_dssp TC-------------TTCCEEECTTCCCSCC---CCTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-
T ss_pred hc-------------ccCCEEECCCCccccc---ccccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-
Confidence 54 6889999999999863 37888999999999999885 35677778888888755
Q ss_pred cccccCCCCCCEEECCCCcccccCcccccC
Q 045861 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEK 427 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 427 (508)
..+..|..+++++|++++.+|..+..
T Consensus 371 ----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 371 ----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp ----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred ----ceeeecCccccccCcEEEEcChhHhc
Confidence 34567888899999999888765533
|
| >3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.1e-34 Score=279.11 Aligned_cols=315 Identities=17% Similarity=0.179 Sum_probs=274.0
Q ss_pred CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcc
Q 045861 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212 (508)
Q Consensus 133 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 212 (508)
.+++++.++++++.+....+..|..+++|++|++++|.+..++. ..+..+++|++|++++|.+++..+..+..++
T Consensus 43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccCh-----hhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 46899999999999986666668899999999999999877543 4588899999999999999988888888776
Q ss_pred cccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
+|++|++++|.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+++. .+..+++|+.+++
T Consensus 118 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l 193 (390)
T 3o6n_A 118 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 193 (390)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeec
Confidence 999999999999866666678999999999999999988888899999999999999999854 3667899999999
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++|.+.+. ...++|++|++++|.+...... ..++|++|++++|.+++. ..+..+++|++|++++|.+.+.
T Consensus 194 ~~n~l~~~-----~~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 194 SYNLLSTL-----AIPIAVEELDASHNSINVVRGP---VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp CSSCCSEE-----ECCSSCSEEECCSSCCCEEECC---CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEE
T ss_pred cccccccc-----CCCCcceEEECCCCeeeecccc---ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCc
Confidence 99987542 3456899999999999876432 357999999999999854 5788999999999999999988
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccC
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 452 (508)
.+..+..+++|++|++++|++++ ++..+..+++|++|++++|++. .+|..+..+++|++|++++|+++ .+| ...++
T Consensus 264 ~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~i~-~~~-~~~~~ 339 (390)
T 3o6n_A 264 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHH 339 (390)
T ss_dssp ESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTC
T ss_pred ChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCccc-eeC-chhhc
Confidence 89999999999999999999984 5666788999999999999999 56667888999999999999998 455 44678
Q ss_pred CCCcccccCCCCCCCCCC
Q 045861 453 NFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 453 ~l~~l~l~~n~~~c~~~~ 470 (508)
+|+.+++++|||.|+|..
T Consensus 340 ~L~~L~l~~N~~~~~~~~ 357 (390)
T 3o6n_A 340 TLKNLTLSHNDWDCNSLR 357 (390)
T ss_dssp CCSEEECCSSCEEHHHHH
T ss_pred cCCEEEcCCCCccchhHH
Confidence 999999999999999853
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=100.00 E-value=2.8e-34 Score=272.15 Aligned_cols=255 Identities=33% Similarity=0.520 Sum_probs=227.7
Q ss_pred ccCeeEccCCcCcc--cCChhhhcCCCCcEEEccc-CccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE
Q 045861 214 SLEYIYMPYCRRSG--RIPEEIGNLINLITMSLGI-NKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290 (508)
Q Consensus 214 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 290 (508)
+++.|+++++.+.+ .+|..+..+++|++|++++ |.+.+..|..++.+++|++|++++|.+.+..|..+..+++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 67777777777776 6777888888888888884 88887888888888999999999998887888888889999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCcc-CCcEEEccCCccccccCccccCCCCCcEEECCCCcC
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLR-DILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 369 (508)
++++|.+.+..|..+..+++|++|++++|.+++..+..+..++ +|++|++++|.+++..|..+..+. |++|++++|.+
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l 209 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEE
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcc
Confidence 9999998888888888899999999999999888888888887 899999999999988888888887 99999999999
Q ss_pred CCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc
Q 045861 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE 449 (508)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 449 (508)
.+..+..+..+++|++|++++|.+++..+. +..+++|++|++++|++++.+|..+..+++|++|++++|++++.+|...
T Consensus 210 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~ 288 (313)
T 1ogq_A 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred cCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCc
Confidence 988899999999999999999999866555 7889999999999999999999999999999999999999999999998
Q ss_pred ccCCCCcccccCCCCCCCCCC
Q 045861 450 SFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 450 ~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.+++++.+++.+||++|+.|.
T Consensus 289 ~l~~L~~l~l~~N~~lc~~p~ 309 (313)
T 1ogq_A 289 NLQRFDVSAYANNKCLCGSPL 309 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS
T ss_pred cccccChHHhcCCCCccCCCC
Confidence 899999999999999999765
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.5e-33 Score=267.11 Aligned_cols=307 Identities=23% Similarity=0.337 Sum_probs=207.2
Q ss_pred ccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCC
Q 045861 89 IGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSF 168 (508)
Q Consensus 89 ~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 168 (508)
+..+++|++|+++++.+. .++ .+..+++|++|++++|.++... . +..+++|++|++++
T Consensus 40 ~~~l~~L~~L~l~~~~i~-------------------~~~-~~~~~~~L~~L~l~~n~i~~~~-~-~~~l~~L~~L~L~~ 97 (347)
T 4fmz_A 40 QEELESITKLVVAGEKVA-------------------SIQ-GIEYLTNLEYLNLNGNQITDIS-P-LSNLVKLTNLYIGT 97 (347)
T ss_dssp HHHHTTCSEEECCSSCCC-------------------CCT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCTTCCEEECCS
T ss_pred chhcccccEEEEeCCccc-------------------cch-hhhhcCCccEEEccCCccccch-h-hhcCCcCCEEEccC
Confidence 345566666666666554 222 3666777888888887776433 2 77778888888887
Q ss_pred CcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCc
Q 045861 169 NYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINK 248 (508)
Q Consensus 169 n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 248 (508)
|.+..+ ..+..+++|++|++++|.+.+..+ +...+ +|++|++++|.....++. +..+++|++|++++|.
T Consensus 98 n~i~~~-------~~~~~l~~L~~L~l~~n~i~~~~~--~~~l~-~L~~L~l~~n~~~~~~~~-~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 98 NKITDI-------SALQNLTNLRELYLNEDNISDISP--LANLT-KMYSLNLGANHNLSDLSP-LSNMTGLNYLTVTESK 166 (347)
T ss_dssp SCCCCC-------GGGTTCTTCSEEECTTSCCCCCGG--GTTCT-TCCEEECTTCTTCCCCGG-GTTCTTCCEEECCSSC
T ss_pred CcccCc-------hHHcCCCcCCEEECcCCcccCchh--hccCC-ceeEEECCCCCCcccccc-hhhCCCCcEEEecCCC
Confidence 776543 346677778888887777764432 44443 777777777755544443 6777778888887777
Q ss_pred cccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCcc
Q 045861 249 LTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPST 328 (508)
Q Consensus 249 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~ 328 (508)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+ +..+++|++|++++|.++...+
T Consensus 167 ~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-- 238 (347)
T 4fmz_A 167 VKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-- 238 (347)
T ss_dssp CCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--
T ss_pred cCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--
Confidence 764332 6677777788887777764322 6677777777777777654333 6667777777777777765543
Q ss_pred ccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCC
Q 045861 329 FLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE 408 (508)
Q Consensus 329 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 408 (508)
+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.+++..+..+..+++|+
T Consensus 239 ~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~ 314 (347)
T 4fmz_A 239 LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLT 314 (347)
T ss_dssp GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCS
T ss_pred hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHhhccccCC
Confidence 66777777777777777643 3566777777777777777743 3466777777777777777766667777777777
Q ss_pred EEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 409 FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 409 ~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+|++++|++++..| +..+++|++|++++|+++
T Consensus 315 ~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 315 TLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp EEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred EEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 77777777776554 667777777777777764
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-33 Score=287.78 Aligned_cols=333 Identities=18% Similarity=0.149 Sum_probs=250.4
Q ss_pred CCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCC
Q 045861 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLK 191 (508)
Q Consensus 112 ~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~ 191 (508)
+++.++++++.+....+..+..+++|++|++++|.+.+..+..|+.+++|++|++++|.+..++. ..|..+++|+
T Consensus 52 ~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~ 126 (597)
T 3oja_B 52 NQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPP-----HVFQNVPLLT 126 (597)
T ss_dssp CCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCT-----TTTTTCTTCC
T ss_pred CceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCH-----HHHcCCCCCC
Confidence 34444455555443444446677788888888888877666777778888888888887766543 3466777888
Q ss_pred EEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCC
Q 045861 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKN 271 (508)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n 271 (508)
.|++++|.++...+..+..++ +|++|++++|.+.+..|..+..+++|++|++++|.+.+. .++.+++|++|++++|
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~-~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTP-KLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYN 202 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCT-TCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSS
T ss_pred EEEeeCCCCCCCCHHHhccCC-CCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccC
Confidence 888888877755555555554 788888888877777777788888888888888888754 2556788888888888
Q ss_pred cCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc
Q 045861 272 KLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351 (508)
Q Consensus 272 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~ 351 (508)
.+.+ +...++|+.|++++|.+....+.. .++|+.|++++|.+++. ..+..+++|++|++++|.+.+..|.
T Consensus 203 ~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~ 272 (597)
T 3oja_B 203 LLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYH 272 (597)
T ss_dssp CCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESG
T ss_pred cccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHH
Confidence 7763 234557888898888876443322 36899999999988864 5678888999999999999888888
Q ss_pred cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCC
Q 045861 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYL 431 (508)
Q Consensus 352 ~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L 431 (508)
.+..+++|+.|++++|.+.+ +|..+..+++|+.|++++|.++ .+|..+..+++|+.|++++|.+++.. +..+++|
T Consensus 273 ~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~~---~~~~~~L 347 (597)
T 3oja_B 273 PFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTLK---LSTHHTL 347 (597)
T ss_dssp GGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCCC---CCTTCCC
T ss_pred HhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCcC---hhhcCCC
Confidence 88999999999999999985 5666677899999999999998 67777888899999999999988652 6677889
Q ss_pred CEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 432 EYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 432 ~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+.|++++|++.+... ...+..+....+.+++..|+.+
T Consensus 348 ~~L~l~~N~~~~~~~-~~~~~~~~~~~~~~~~~~C~~~ 384 (597)
T 3oja_B 348 KNLTLSHNDWDCNSL-RALFRNVARPAVDDADQHCKID 384 (597)
T ss_dssp SEEECCSSCEEHHHH-HHHTTTCCTTTBCCCCCCCCTT
T ss_pred CEEEeeCCCCCChhH-HHHHHHHhhhccccccccCCcc
Confidence 999999999885432 2235556666778888888763
|
| >4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-32 Score=264.85 Aligned_cols=308 Identities=26% Similarity=0.379 Sum_probs=224.0
Q ss_pred CCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEcc
Q 045861 40 NLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLE 119 (508)
Q Consensus 40 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~ 119 (508)
.+..+++|++|+++++.+... +.+..+++|++|++++|++.+. +. +..+++|++|++++|.+.
T Consensus 39 ~~~~l~~L~~L~l~~~~i~~~--~~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~------------- 101 (347)
T 4fmz_A 39 TQEELESITKLVVAGEKVASI--QGIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKIT------------- 101 (347)
T ss_dssp CHHHHTTCSEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCC-------------
T ss_pred cchhcccccEEEEeCCccccc--hhhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCccc-------------
Confidence 356788999999999988754 3588889999999999988743 33 888888888888888765
Q ss_pred CCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCcc
Q 045861 120 RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199 (508)
Q Consensus 120 ~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~ 199 (508)
.+ ..+..+++|++|++++|.+... +. +..+++|++|++++|..... ...+..+++|+.|+++++.
T Consensus 102 ------~~-~~~~~l~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~l~~n~~~~~------~~~~~~l~~L~~L~l~~~~ 166 (347)
T 4fmz_A 102 ------DI-SALQNLTNLRELYLNEDNISDI-SP-LANLTKMYSLNLGANHNLSD------LSPLSNMTGLNYLTVTESK 166 (347)
T ss_dssp ------CC-GGGTTCTTCSEEECTTSCCCCC-GG-GTTCTTCCEEECTTCTTCCC------CGGGTTCTTCCEEECCSSC
T ss_pred ------Cc-hHHcCCCcCCEEECcCCcccCc-hh-hccCCceeEEECCCCCCccc------ccchhhCCCCcEEEecCCC
Confidence 22 3577888899999988888743 33 77888888888888854331 1336677777777777776
Q ss_pred CccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccch
Q 045861 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279 (508)
Q Consensus 200 ~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~ 279 (508)
+.+..+ +..+++|++|++++|.+.+..+ +..+++|+.+++++|.+.+..+
T Consensus 167 ~~~~~~---------------------------~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~- 216 (347)
T 4fmz_A 167 VKDVTP---------------------------IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP- 216 (347)
T ss_dssp CCCCGG---------------------------GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred cCCchh---------------------------hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch-
Confidence 653321 3455566666666666553222 5566667777777776664332
Q ss_pred hhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCC
Q 045861 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVV 359 (508)
Q Consensus 280 ~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L 359 (508)
+..+++|++|++++|.+.+..+ +..+++|++|++++|.++.. ..+..+++|++|++++|.+++. ..+..+++|
T Consensus 217 -~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L 289 (347)
T 4fmz_A 217 -VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQL 289 (347)
T ss_dssp -GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTC
T ss_pred -hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCC
Confidence 6667777777777777654332 66777788888887777654 3577788888888888888753 357788899
Q ss_pred cEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc
Q 045861 360 VGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 360 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+.|++++|++.+..+..+..+++|++|++++|++++..| +..+++|++|++++|.++
T Consensus 290 ~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 290 NSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp SEEECCSSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred CEEECcCCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999988888889999999999999999986555 778899999999999886
|
| >3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.9e-33 Score=287.33 Aligned_cols=314 Identities=18% Similarity=0.184 Sum_probs=275.6
Q ss_pred CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcc
Q 045861 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLS 212 (508)
Q Consensus 133 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~ 212 (508)
.+.+++.++++++.+....+..|..+++|+.|++++|.+..++. ..|..+++|+.|++++|.+++..+..+..++
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDT-----YAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECT-----TTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCCh-----HHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 35789999999999997777778999999999999999887543 4588899999999999999988888888776
Q ss_pred cccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 213 TSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 213 ~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
+|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+..+++|+.|++
T Consensus 124 -~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l 199 (597)
T 3oja_B 124 -LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANV 199 (597)
T ss_dssp -TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEEC
T ss_pred -CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---Chhhhhhhhhhhc
Confidence 999999999999977777789999999999999999988888899999999999999999854 2567889999999
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++|.+.+ +...++|+.|++++|.+....... .++|++|++++|.+++ +..+..+++|+.|++++|.+.+.
T Consensus 200 ~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~~~---~~~L~~L~L~~n~l~~--~~~l~~l~~L~~L~Ls~N~l~~~ 269 (597)
T 3oja_B 200 SYNLLST-----LAIPIAVEELDASHNSINVVRGPV---NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 269 (597)
T ss_dssp CSSCCSE-----EECCTTCSEEECCSSCCCEEECSC---CSCCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred ccCcccc-----ccCCchhheeeccCCccccccccc---CCCCCEEECCCCCCCC--ChhhccCCCCCEEECCCCccCCC
Confidence 9998764 334578999999999998765433 3689999999999985 36788999999999999999988
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccC
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFA 452 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 452 (508)
.|..|..+++|+.|++++|.+++ +|..+..+++|+.|+|++|.++ .+|..+..+++|++|++++|++. .+| ...++
T Consensus 270 ~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~-~~~-~~~~~ 345 (597)
T 3oja_B 270 MYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLK-LSTHH 345 (597)
T ss_dssp ESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCC-CCC-CCTTC
T ss_pred CHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCC-CcC-hhhcC
Confidence 89999999999999999999995 5667788999999999999999 56777889999999999999998 444 34678
Q ss_pred CCCcccccCCCCCCCCC
Q 045861 453 NFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 453 ~l~~l~l~~n~~~c~~~ 469 (508)
+|+.+++++|||.|+|.
T Consensus 346 ~L~~L~l~~N~~~~~~~ 362 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSL 362 (597)
T ss_dssp CCSEEECCSSCEEHHHH
T ss_pred CCCEEEeeCCCCCChhH
Confidence 99999999999999884
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-31 Score=253.15 Aligned_cols=301 Identities=23% Similarity=0.278 Sum_probs=184.5
Q ss_pred CCchhhhhCCC-----CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCC
Q 045861 11 SLPDDMCQHLP-----RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEI 85 (508)
Q Consensus 11 ~l~~~~~~~~~-----~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 85 (508)
++|..+...+| +++.++++++.++ .+|..+ .++|++|++++|.+++..+..|.++++|++|++++|++.+..
T Consensus 18 ~lp~~~~~~cp~~c~c~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 94 (332)
T 2ft3_A 18 SLPPTYSAMCPFGCHCHLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94 (332)
T ss_dssp -------CCCCSSCEEETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEEC
T ss_pred cCCCcccCCCCCCCcccCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccC
Confidence 56665544443 7999999999988 666655 478999999999999887888999999999999999998777
Q ss_pred chhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEe
Q 045861 86 PHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165 (508)
Q Consensus 86 ~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~ 165 (508)
|..|.++++|++|++++|.+. .+|..+. ++|++|++++|.+....+..|..+++|++|+
T Consensus 95 ~~~~~~l~~L~~L~L~~n~l~-------------------~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~ 153 (332)
T 2ft3_A 95 EKAFSPLRKLQKLYISKNHLV-------------------EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIE 153 (332)
T ss_dssp GGGSTTCTTCCEEECCSSCCC-------------------SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEE
T ss_pred HhHhhCcCCCCEEECCCCcCC-------------------ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEE
Confidence 889999999999999998876 3333333 6777777777777765556677777777777
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcc
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLG 245 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~ 245 (508)
+++|.+...+... ..+..+ +|+.|++++|.+++. |..+. ++|++|++++|.+.+..
T Consensus 154 l~~n~l~~~~~~~---~~~~~l-~L~~L~l~~n~l~~l-~~~~~---~~L~~L~l~~n~i~~~~---------------- 209 (332)
T 2ft3_A 154 MGGNPLENSGFEP---GAFDGL-KLNYLRISEAKLTGI-PKDLP---ETLNELHLDHNKIQAIE---------------- 209 (332)
T ss_dssp CCSCCCBGGGSCT---TSSCSC-CCSCCBCCSSBCSSC-CSSSC---SSCSCCBCCSSCCCCCC----------------
T ss_pred CCCCccccCCCCc---ccccCC-ccCEEECcCCCCCcc-Ccccc---CCCCEEECCCCcCCccC----------------
Confidence 7777765321111 234444 666777777666542 22111 24444444444444333
Q ss_pred cCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccC
Q 045861 246 INKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVI 325 (508)
Q Consensus 246 ~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~ 325 (508)
+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+. .+|..+..+++|+.|++++|.++...
T Consensus 210 --------~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~ 280 (332)
T 2ft3_A 210 --------LEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVG 280 (332)
T ss_dssp --------TTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCC
T ss_pred --------HHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccC
Confidence 344444445555555555544444444455555555555555544 34444555555555555555555444
Q ss_pred CccccC------ccCCcEEEccCCccc--cccCccccCCCCCcEEECCCCc
Q 045861 326 PSTFLS------LRDILVFNFSSNSLN--GSLPLDIGNLKVVVGIDLSRNN 368 (508)
Q Consensus 326 ~~~~~~------~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~l~~n~ 368 (508)
+..|.. ...|+.+++++|.+. +..+.++..++.|+.+++++|+
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 443332 245666666666665 4455666667777777776663
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.98 E-value=1.4e-30 Score=249.18 Aligned_cols=291 Identities=22% Similarity=0.290 Sum_probs=180.1
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
+++.++++++.++ .+|..+ .+++++|++++|++++..+..|+++++|++|++++|++.+..|..|.++++|++|+++
T Consensus 32 ~l~~l~~~~~~l~-~lp~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 32 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCeEEEecCCCcc-ccCccC--CCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 7899999999888 566554 3789999999999998877789999999999999999987778899999999999999
Q ss_pred cccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccc
Q 045861 102 NNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFL 181 (508)
Q Consensus 102 ~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 181 (508)
+|.++ .+|..+. ++|++|++++|.+....+..|..+++|++|++++|.+...+.. .
T Consensus 109 ~n~l~-------------------~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~---~ 164 (330)
T 1xku_A 109 KNQLK-------------------ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE---N 164 (330)
T ss_dssp SSCCS-------------------BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC---T
T ss_pred CCcCC-------------------ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcC---h
Confidence 98876 3333332 5777777777777766666677777777777777776532111 1
Q ss_pred ccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCC
Q 045861 182 SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQ 261 (508)
Q Consensus 182 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 261 (508)
..+..+++|+.|++++|.++.. |..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 165 ~~~~~l~~L~~L~l~~n~l~~l-~~~~~---~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~----- 235 (330)
T 1xku_A 165 GAFQGMKKLSYIRIADTNITTI-PQGLP---PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS----- 235 (330)
T ss_dssp TGGGGCTTCCEEECCSSCCCSC-CSSCC---TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT-----
T ss_pred hhccCCCCcCEEECCCCccccC-Ccccc---ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh-----
Confidence 4466667777777777766532 22111 24444444444444444444444444444444444444333334
Q ss_pred CCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccC------ccCC
Q 045861 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS------LRDI 335 (508)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~------~~~L 335 (508)
+..+++|++|++++|.+. .+|..+..+++|++|++++|.++...+..|.. ...+
T Consensus 236 -------------------~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l 295 (330)
T 1xku_A 236 -------------------LANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASY 295 (330)
T ss_dssp -------------------GGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCC
T ss_pred -------------------ccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccc
Confidence 444444444444444443 33344444455555555555554444333322 2455
Q ss_pred cEEEccCCcccc--ccCccccCCCCCcEEECCCCc
Q 045861 336 LVFNFSSNSLNG--SLPLDIGNLKVVVGIDLSRNN 368 (508)
Q Consensus 336 ~~L~L~~n~l~~--~~~~~~~~l~~L~~L~l~~n~ 368 (508)
+.+++++|.+.. ..|..+..+..++.+++++|+
T Consensus 296 ~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 296 SGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cceEeecCcccccccCccccccccceeEEEecccC
Confidence 666666665542 344566666667777776663
|
| >1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 | Back alignment and structure |
|---|
Probab=99.97 E-value=2.3e-31 Score=252.05 Aligned_cols=252 Identities=29% Similarity=0.455 Sum_probs=226.9
Q ss_pred CCCCEEEccCccCcc--CCChhhhhcccccCeeEccC-CcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 188 RNLKVIDLTGNQLHG--ILPSSMGNLSTSLEYIYMPY-CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 188 ~~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
.+++.|+++++.+.+ ..|..+..++ +|++|++++ +.+.+.+|..+..+++|++|++++|.+.+..|..+.++++|+
T Consensus 50 ~~l~~L~L~~~~l~~~~~~~~~l~~l~-~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~ 128 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLV 128 (313)
T ss_dssp CCEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCC
T ss_pred ceEEEEECCCCCccCCcccChhHhCCC-CCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCC
Confidence 468888888888887 7788888776 899999984 888888888899999999999999999888888999999999
Q ss_pred cEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCC-CCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLS-PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
+|++++|.+.+..|..+..+++|++|++++|.+.+..|..+..++ +|++|++++|.+.+..+..+..+. |++|++++|
T Consensus 129 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 129 TLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp EEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred EEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence 999999999888888999999999999999999888998898887 999999999999988888888887 999999999
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 423 (508)
.+++..+..+..+++|+.|++++|.+.+..+. +..+++|++|++++|.+++.+|..+..+++|++|++++|++++.+|.
T Consensus 208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~ 286 (313)
T 1ogq_A 208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ 286 (313)
T ss_dssp EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence 99988899999999999999999999866655 78899999999999999989999999999999999999999988887
Q ss_pred cccCCCCCCEEeCCCCccee
Q 045861 424 SFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 424 ~l~~l~~L~~L~l~~n~l~~ 443 (508)
. ..+++|+.+++++|+..+
T Consensus 287 ~-~~l~~L~~l~l~~N~~lc 305 (313)
T 1ogq_A 287 G-GNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp S-TTGGGSCGGGTCSSSEEE
T ss_pred C-ccccccChHHhcCCCCcc
Confidence 6 788999999999999553
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=1.9e-34 Score=289.56 Aligned_cols=387 Identities=20% Similarity=0.165 Sum_probs=198.7
Q ss_pred CCCcEEecCCCcCCCCCCcC-CcCCCCCcEEEcccCCCCCC----CCcccCCCCCCCeEEccCCccccCCchhc-cCCC-
Q 045861 21 PRLQALDINNNHVTGPVPRN-LWQCQELIAISLSHNQLTGL----IPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLH- 93 (508)
Q Consensus 21 ~~L~~L~l~~~~~~~~~~~~-~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~- 93 (508)
++|++|+++++.++...... +..+++|++|++++|+++.. ++..+..+++|++|++++|.+.+..+..+ ..++
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~ 82 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT 82 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence 45666677666665332222 45566667777766666532 23445556666666666666554333222 2233
Q ss_pred ---CCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhc-----CCCCCCEEe
Q 045861 94 ---NLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIA-----NLRNLQWLD 165 (508)
Q Consensus 94 ---~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~~L~ 165 (508)
+|++|++++|.+.... + ..++..+..+++|++|++++|.+....+..+. ..++|++|+
T Consensus 83 ~~~~L~~L~L~~n~i~~~~-------------~-~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 148 (461)
T 1z7x_W 83 PSCKIQKLSLQNCCLTGAG-------------C-GVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQ 148 (461)
T ss_dssp TTCCCCEEECTTSCCBGGG-------------H-HHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred CCCceeEEEccCCCCCHHH-------------H-HHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEE
Confidence 3555555544433100 0 13456677777888888888877654333332 245677888
Q ss_pred CCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhc----ccccCeeEccCCcCccc----CChhhhcCC
Q 045861 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNL----STSLEYIYMPYCRRSGR----IPEEIGNLI 237 (508)
Q Consensus 166 l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~----~~~L~~L~l~~~~~~~~----~~~~l~~l~ 237 (508)
+++|.+..... ..+...+..+++|++|++++|.++...+..+... .++|++|++++|.+.+. ++..+..++
T Consensus 149 L~~n~l~~~~~-~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~ 227 (461)
T 1z7x_W 149 LEYCSLSAASC-EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 227 (461)
T ss_dssp CTTSCCBGGGH-HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred CCCCCCCHHHH-HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCC
Confidence 87776654210 0112345556777777777777654433333221 12555555555554432 234444555
Q ss_pred CCcEEEcccCcccccc-----CccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 238 NLITMSLGINKLTGSI-----PISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~-----~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+|++|++++|.+.... +..+..+++|++|++++|.+++.... .++..+..+++|+
T Consensus 228 ~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~--------------------~l~~~l~~~~~L~ 287 (461)
T 1z7x_W 228 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCG--------------------DLCRVLRAKESLK 287 (461)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHH--------------------HHHHHHHHCTTCC
T ss_pred CccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHH--------------------HHHHHHhhCCCcc
Confidence 5555555555544221 11112344555555555544432000 0223333344555
Q ss_pred EEEcCCCcccccCCccc-----cCccCCcEEEccCCccccc----cCccccCCCCCcEEECCCCcCCCccchhhhc----
Q 045861 313 NLLLHSNVLTYVIPSTF-----LSLRDILVFNFSSNSLNGS----LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGG---- 379 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~-----~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~---- 379 (508)
+|++++|.+.+.....+ ...++|++|++++|.+++. ++..+..+++|++|++++|.+.+..+..+..
T Consensus 288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~ 367 (461)
T 1z7x_W 288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ 367 (461)
T ss_dssp EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence 55555554433221111 1124555556655555533 3344455566666666666666544433332
Q ss_pred -CCCCCEEECcCCcccc----cCcccccCCCCCCEEECCCCcccccCccccc-----CCCCCCEEeCCCCcce
Q 045861 380 -LSNLAFFSLAYNKLQG----SIPESLGDLRSLEFLDLSNNSFSGFIPRSFE-----KLLYLEYLNLSFNRLK 442 (508)
Q Consensus 380 -l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~-----~l~~L~~L~l~~n~l~ 442 (508)
.++|++|++++|.+++ .++..+..+++|++|++++|++++.....+. ....|+.|++.++...
T Consensus 368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 440 (461)
T ss_dssp TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccC
Confidence 5567777777777664 4555566667777777777766643222221 1235666666666554
|
| >1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I | Back alignment and structure |
|---|
Probab=99.97 E-value=8.9e-34 Score=284.64 Aligned_cols=380 Identities=16% Similarity=0.122 Sum_probs=249.5
Q ss_pred CCCcEEEcccCCCCCCCCcc-cCCCCCCCeEEccCCcccc----CCchhccCCCCCCEeeCccccCCCCCCCCCCEEEcc
Q 045861 45 QELIAISLSHNQLTGLIPRD-IGNLTSARALLLGNNNLIG----EIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLE 119 (508)
Q Consensus 45 ~~L~~L~L~~n~l~~~~~~~-~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~ 119 (508)
++|++|++++++++...... +..+++|++|++++|.+.. .++..+..+++|++|++++|.+..
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~------------ 70 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD------------ 70 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH------------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh------------
Confidence 45677777777765433222 5566777777777776653 234455666666666666665431
Q ss_pred CCcccccCCccc-cCCC----CCcEEEccCccccc----ccChhhcCCCCCCEEeCCCCcCcCCCCCCccccc-ccCCCC
Q 045861 120 RNNFSGTIPSFI-FNAS----KLSILGIRTNSFSG----TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS-LRNCRN 189 (508)
Q Consensus 120 ~~~~~~~~~~~~-~~l~----~L~~L~l~~~~i~~----~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-l~~~~~ 189 (508)
..+..+ ..++ +|++|++++|.++. .++..+..+++|++|++++|.+...... .+... ....++
T Consensus 71 ------~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~-~l~~~l~~~~~~ 143 (461)
T 1z7x_W 71 ------VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCR 143 (461)
T ss_dssp ------HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHTSTTCC
T ss_pred ------HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHH-HHHHHHhcCCCc
Confidence 111111 1222 56667776666653 3455566666666666666665431100 00000 112334
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCcccc-----CCCCCC
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLG-----KLQKLQ 264 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~-----~~~~L~ 264 (508)
|++|++++|.+++.... .++..+..+++|++|++++|.+....+..+. ..++|+
T Consensus 144 L~~L~L~~n~l~~~~~~---------------------~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~ 202 (461)
T 1z7x_W 144 LEKLQLEYCSLSAASCE---------------------PLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLE 202 (461)
T ss_dssp CCEEECTTSCCBGGGHH---------------------HHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCC
T ss_pred ceEEECCCCCCCHHHHH---------------------HHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCce
Confidence 55555555554432211 1234456677788888888877644333332 356888
Q ss_pred cEEccCCcCccc----cchhhhCCCCCcEEEeeCceeeeeC-----CcccCCCCCCCEEEcCCCccccc----CCccccC
Q 045861 265 GLYLYKNKLEGS----IPDSLCNLGRLVELQFYDNKLFGSI-----PACIGKLSPLRNLLLHSNVLTYV----IPSTFLS 331 (508)
Q Consensus 265 ~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~-----~~~~~~~~~L~~L~l~~n~~~~~----~~~~~~~ 331 (508)
+|++++|.+++. ++..+..+++|++|++++|.+.... +..+..+++|++|++++|.++.. .+..+..
T Consensus 203 ~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~ 282 (461)
T 1z7x_W 203 ALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRA 282 (461)
T ss_dssp EEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHH
T ss_pred EEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhh
Confidence 888888888753 4666777889999999998875432 23334689999999999998864 3445667
Q ss_pred ccCCcEEEccCCccccccCcccc-----CCCCCcEEECCCCcCCCc----cchhhhcCCCCCEEECcCCcccccCccccc
Q 045861 332 LRDILVFNFSSNSLNGSLPLDIG-----NLKVVVGIDLSRNNLSDS----IPTVIGGLSNLAFFSLAYNKLQGSIPESLG 402 (508)
Q Consensus 332 ~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~ 402 (508)
+++|++|++++|.++...+..+. ..++|++|++++|.+++. ++..+..+++|++|++++|.+++..+..+.
T Consensus 283 ~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~ 362 (461)
T 1z7x_W 283 KESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELC 362 (461)
T ss_dssp CTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHH
T ss_pred CCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHH
Confidence 89999999999998754433332 236999999999999865 456677889999999999999866554443
Q ss_pred C-----CCCCCEEECCCCcccc----cCcccccCCCCCCEEeCCCCcceec--------CCCccccCCCCcccccCCCCC
Q 045861 403 D-----LRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLSFNRLKGE--------IPSGESFANFSDNSFMGNSFL 465 (508)
Q Consensus 403 ~-----l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~--------~p~~~~~~~l~~l~l~~n~~~ 465 (508)
. .++|++|++++|.+++ .++..+..+++|++|++++|++... +|. ....++.+.+.++.+.
T Consensus 363 ~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~--~~~~L~~L~~~~~~~~ 440 (461)
T 1z7x_W 363 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQ--PGCLLEQLVLYDIYWS 440 (461)
T ss_dssp HHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTS--TTCCCCEEECTTCCCC
T ss_pred HHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhcc--CCcchhheeecccccC
Confidence 2 6799999999999996 6778888999999999999998743 222 2345777777777554
Q ss_pred C
Q 045861 466 C 466 (508)
Q Consensus 466 c 466 (508)
+
T Consensus 441 ~ 441 (461)
T 1z7x_W 441 E 441 (461)
T ss_dssp H
T ss_pred H
Confidence 3
|
| >1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=9.7e-30 Score=243.33 Aligned_cols=269 Identities=19% Similarity=0.225 Sum_probs=141.1
Q ss_pred CCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccc
Q 045861 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTS 214 (508)
Q Consensus 135 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 214 (508)
+++++|++++|++++..+..|+.+++|++|++++|.+..+.. ..+..+++|++|++++|.++.. |..+. ++
T Consensus 52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~Ls~n~l~~l-~~~~~---~~ 122 (330)
T 1xku_A 52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISP-----GAFAPLVKLERLYLSKNQLKEL-PEKMP---KT 122 (330)
T ss_dssp TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCT-----TTTTTCTTCCEEECCSSCCSBC-CSSCC---TT
T ss_pred CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCH-----HHhcCCCCCCEEECCCCcCCcc-Chhhc---cc
Confidence 355555555555554444455555555555555555544321 2344555555555555554421 11111 24
Q ss_pred cCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccc--ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 215 LEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG--SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 215 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+.++++|++|++++|.+..
T Consensus 123 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~----------------- 185 (330)
T 1xku_A 123 LQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT----------------- 185 (330)
T ss_dssp CCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCS-----------------
T ss_pred ccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCcccc-----------------
Confidence 4444444444444444444455555555555555432 233344444444444444444442
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. .
T Consensus 186 --------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 254 (330)
T 1xku_A 186 --------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-K 254 (330)
T ss_dssp --------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-S
T ss_pred --------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCc-c
Confidence 222111 45555555555555555555555555555555555555444445556666666666666666 4
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccC------CCCCCEEECCCCcccc--cCcccccCCCCCCEEeCCCCc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGD------LRSLEFLDLSNNSFSG--FIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|..+..+++|++|++++|.+++..+..|.. .+.++.|++++|.+.. ..|..|..+++++.+++++|+
T Consensus 255 lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 255 VPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp CCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred CChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 5555666666666666666666544444432 3567777777777653 455677777777777777764
|
| >2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.1e-30 Score=244.04 Aligned_cols=268 Identities=20% Similarity=0.217 Sum_probs=156.6
Q ss_pred CCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccc
Q 045861 135 SKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTS 214 (508)
Q Consensus 135 ~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~ 214 (508)
+++++|++++|.+....+..|..+++|++|++++|.+..+.. ..+..+++|++|++++|.++.. |..+. ++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-----~~~~~l~~L~~L~L~~n~l~~l-~~~~~---~~ 124 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHE-----KAFSPLRKLQKLYISKNHLVEI-PPNLP---SS 124 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECG-----GGSTTCTTCCEEECCSSCCCSC-CSSCC---TT
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCH-----hHhhCcCCCCEEECCCCcCCcc-Ccccc---cc
Confidence 456666666666655555555666666666666665544221 3355555666666665555422 22111 24
Q ss_pred cCeeEccCCcCcccCChhhhcCCCCcEEEcccCcccc--ccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEe
Q 045861 215 LEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG--SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 215 L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 292 (508)
|++|++++|.+.+..+..+..+++|++|++++|.+.. ..+..+..+ +|++|++++|.+++ +|
T Consensus 125 L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~-------------- 188 (332)
T 2ft3_A 125 LVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IP-------------- 188 (332)
T ss_dssp CCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CC--------------
T ss_pred CCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc-cC--------------
Confidence 5555555555444444445555666666666665532 333444444 55555555555542 22
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
..+. ++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++. .
T Consensus 189 ----------~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~ 255 (332)
T 2ft3_A 189 ----------KDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-R 255 (332)
T ss_dssp ----------SSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-B
T ss_pred ----------cccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-e
Confidence 2111 45666666666666555556666666666666666666555556667777777777777776 5
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccC------CCCCCEEECCCCccc--ccCcccccCCCCCCEEeCCCCc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGD------LRSLEFLDLSNNSFS--GFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~------l~~L~~L~L~~n~~~--~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|..+..+++|++|++++|.+++..+..|.. .+.|+.|++++|.+. +..+.+|..+++|+.+++++|+
T Consensus 256 lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 256 VPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred cChhhhcCccCCEEECCCCCCCccChhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 6666777777777777777777655555543 356788888888776 5667778888888888888774
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=2.5e-31 Score=275.43 Aligned_cols=405 Identities=15% Similarity=0.110 Sum_probs=248.9
Q ss_pred CCchhhhhCCCCCcEEecCCCcCC---CCCCcCCc------------CCCCCcEEEcccCCCCCCCCcccCC-CC-CCCe
Q 045861 11 SLPDDMCQHLPRLQALDINNNHVT---GPVPRNLW------------QCQELIAISLSHNQLTGLIPRDIGN-LT-SARA 73 (508)
Q Consensus 11 ~l~~~~~~~~~~L~~L~l~~~~~~---~~~~~~~~------------~~~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~ 73 (508)
..|..++.++++|++|+++++... +.+|..+. .+++|++|+|++|.+++..+..+.. ++ +|++
T Consensus 63 ~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~ 142 (592)
T 3ogk_B 63 ATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLET 142 (592)
T ss_dssp SCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCE
T ss_pred cChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcE
Confidence 456777789999999999886421 22332222 6899999999999887655556655 34 4999
Q ss_pred EEccCCcc-cc-CCchhccCCCCCCEeeCccccCCCC----------CCCCCCEEEccCCccc----ccCCccccCCCCC
Q 045861 74 LLLGNNNL-IG-EIPHEIGNLHNLEYLVLENNNFDGP----------RHSNLERLYLERNNFS----GTIPSFIFNASKL 137 (508)
Q Consensus 74 L~L~~n~l-~~-~~~~~~~~l~~L~~L~L~~n~~~~~----------~~~~L~~L~l~~~~~~----~~~~~~~~~l~~L 137 (508)
|++++|.- .. .++.....+++|++|++++|.+.+. .+++|++|++++|.++ ..++..+.++++|
T Consensus 143 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L 222 (592)
T 3ogk_B 143 LKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSL 222 (592)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTC
T ss_pred EECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCC
Confidence 99998862 21 1233345789999999999987654 4688999999998876 2344455678899
Q ss_pred cEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCe
Q 045861 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEY 217 (508)
Q Consensus 138 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 217 (508)
++|++++|.+.+ ++..+..+++|++|+++...... ........+..+++|+.+.+++... ...+..+...+ +|++
T Consensus 223 ~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~--~~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~-~L~~ 297 (592)
T 3ogk_B 223 VSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNEDI--GMPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAA-QIRK 297 (592)
T ss_dssp CEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCCT--TCTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGG-GCCE
T ss_pred cEEeccCccHHH-HHHHHhhhhHHHhhccccccccc--chHHHHHHhhccccccccCccccch-hHHHHHHhhcC-CCcE
Confidence 999999988874 66778888999999987532211 1112225567778888888877532 23444444444 8888
Q ss_pred eEccCCcCcccCC-hhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccC-----------CcCccc-cchhhhCC
Q 045861 218 IYMPYCRRSGRIP-EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYK-----------NKLEGS-IPDSLCNL 284 (508)
Q Consensus 218 L~l~~~~~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~-----------n~l~~~-~~~~~~~l 284 (508)
|++++|.+.+... ..+..+++|++|+++++......+..+..+++|++|++++ +.+++. +...+..+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 8888877543322 3356777888888773322222333345667788888773 344432 22224457
Q ss_pred CCCcEEEeeCceeeeeCCcccCC-CCCCCEEEcC----CCccccc-----CCccccCccCCcEEEccCCc--cccccCcc
Q 045861 285 GRLVELQFYDNKLFGSIPACIGK-LSPLRNLLLH----SNVLTYV-----IPSTFLSLRDILVFNFSSNS--LNGSLPLD 352 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~-~~~L~~L~l~----~n~~~~~-----~~~~~~~~~~L~~L~L~~n~--l~~~~~~~ 352 (508)
++|++|+++.+.+++.....+.. +++|++|+++ .+.+++. .+..+..+++|++|+++.|. ++......
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 77777777666665544444443 6677777775 3344432 11223445666666665433 33222222
Q ss_pred c-cCCCCCcEEECCCCcCCCc-cchhhhcCCCCCEEECcCCccccc-CcccccCCCCCCEEECCCCccccc
Q 045861 353 I-GNLKVVVGIDLSRNNLSDS-IPTVIGGLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 353 ~-~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
+ ..+++|++|++++|++++. .+..+.++++|++|++++|.+++. ++..+..+++|++|++++|+++..
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~ 528 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT 528 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence 2 2355566666666665542 233345556666666666665433 222234455666666666665543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=2.2e-28 Score=243.25 Aligned_cols=250 Identities=21% Similarity=0.262 Sum_probs=161.7
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEcc
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (508)
...++..+..++ .+|..+ ++.++.|++++|.+.+..+..+..+++|++|++++|.+....+..+.++++|++|+++
T Consensus 45 ~~~v~c~~~~l~-~iP~~~---~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI---STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC---CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCC---CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 456666666665 333322 2367777777777776666667777777777777777766666667777777777777
Q ss_pred CCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCccCCcEEEccCCccccc
Q 045861 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
+|.++...+..|..+++|++|++++|.+....+..+..+++|++|++++ +.+....+..|..+++|++|++++|.++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 7777655555666777777777777776666666666777777777776 3344444455666667777777777666 3
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCC
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 428 (508)
+| .+..+++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..++.|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 33 35556666666666666665556666666666666666666665556666666666666666666665555566666
Q ss_pred CCCCEEeCCCCcceecC
Q 045861 429 LYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 429 ~~L~~L~l~~n~l~~~~ 445 (508)
++|+.|++++|++.+..
T Consensus 279 ~~L~~L~L~~Np~~CdC 295 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNC 295 (440)
T ss_dssp TTCCEEECCSSCEECSS
T ss_pred cCCCEEEcCCCCccCCC
Confidence 66666666666665433
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.8e-28 Score=243.39 Aligned_cols=251 Identities=20% Similarity=0.247 Sum_probs=172.0
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEcc
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (508)
...++.++..++. +|.. .++++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|+++
T Consensus 56 ~~~v~c~~~~l~~-iP~~---~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLSE-VPQG---IPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCSS-CCSC---CCTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcCc-cCCC---CCCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 4566666666653 3332 23477777887777777777777777777777777777776666777777777777777
Q ss_pred CCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCccCCcEEEccCCccccc
Q 045861 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
+|.+....+..|..+++|++|++++|.+....+..+..+++|+.|++++ +.+....+..|..+++|++|++++|.+++.
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~ 211 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM 211 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc
Confidence 7777765556677777777777777777666666677777777777776 344445555666777777777777777633
Q ss_pred cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCC
Q 045861 349 LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKL 428 (508)
Q Consensus 349 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l 428 (508)
| .+..+++|++|++++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|+.|+|++|++++..++.+..+
T Consensus 212 -~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 212 -P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp -C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred -c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 3 35666677777777777776666667777777777777777766666666667777777777777776666666666
Q ss_pred CCCCEEeCCCCcceecCC
Q 045861 429 LYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 429 ~~L~~L~l~~n~l~~~~p 446 (508)
++|+.|++++|++.+...
T Consensus 290 ~~L~~L~L~~Np~~CdC~ 307 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCD 307 (452)
T ss_dssp TTCCEEECCSSCEECSTT
T ss_pred cCCCEEEccCCCcCCCCC
Confidence 777777777776664333
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=231.69 Aligned_cols=255 Identities=20% Similarity=0.178 Sum_probs=160.0
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc--cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEE
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS--IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 291 (508)
++++|++++|.+....+..+..+++|++|++++|.+... .+..+..+++|++|++++|.+. .++..+..+++|++|+
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~ 107 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLD 107 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEE
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEE
Confidence 444444444444433333355566666666666665522 2344555666666666666665 3444566666777777
Q ss_pred eeCceeeeeCC-cccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcccc-ccCccccCCCCCcEEECCCCcC
Q 045861 292 FYDNKLFGSIP-ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG-SLPLDIGNLKVVVGIDLSRNNL 369 (508)
Q Consensus 292 L~~n~~~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l 369 (508)
+++|.+.+..+ ..+..+++|++|++++|.+....+..+..+++|++|++++|.+.+ ..|..+..+++|++|++++|.+
T Consensus 108 l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l 187 (306)
T 2z66_A 108 FQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187 (306)
T ss_dssp CTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCC
T ss_pred CCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCc
Confidence 77776654433 456666777777777777766666666677777777777777764 4566677777777777777777
Q ss_pred CCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCC-CCCEEeCCCCcceecCCCc
Q 045861 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLL-YLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~-~L~~L~l~~n~l~~~~p~~ 448 (508)
.+..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++++..+..+..++ +|++|++++|++.+..+..
T Consensus 188 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~ 267 (306)
T 2z66_A 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 267 (306)
T ss_dssp CEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGH
T ss_pred CCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChH
Confidence 766666677777777777777777765555667777777777777777777777777663 7777777777776443322
Q ss_pred cc---cCCCCcccccCCCCCCCCC
Q 045861 449 ES---FANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 449 ~~---~~~l~~l~l~~n~~~c~~~ 469 (508)
.. +...+.+....+...|..|
T Consensus 268 ~~~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 268 SFLQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp HHHHHHHHTGGGBSCGGGCBEEES
T ss_pred HHHHHHHhhhhhhccccccccCCc
Confidence 11 1223334445555566544
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.96 E-value=5.2e-29 Score=240.55 Aligned_cols=255 Identities=16% Similarity=0.162 Sum_probs=168.3
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|++++|.+++..+..+..+++|++|+++
T Consensus 53 ~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 53 AVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred cCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 55555555555554444456666677777777777666556666677777777777777765444446677777777777
Q ss_pred CceeeeeCC-cccCCCCCCCEEEcCCC-cccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCC
Q 045861 294 DNKLFGSIP-ACIGKLSPLRNLLLHSN-VLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSD 371 (508)
Q Consensus 294 ~n~~~~~~~-~~~~~~~~L~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 371 (508)
+|.+..... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+..
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 776653333 35666777777777776 3555556667777777777777777776667777777777777777777764
Q ss_pred ccchhhhcCCCCCEEECcCCcccccCcccc---cCCCCCCEEECCCCcccc----cCcccccCCCCCCEEeCCCCcceec
Q 045861 372 SIPTVIGGLSNLAFFSLAYNKLQGSIPESL---GDLRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 372 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~----~~~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
.....+..+++|++|++++|.+++..+..+ ...+.++.++++++.+.+ .+|+.+..+++|++|++++|+++ .
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~ 291 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-S 291 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-C
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-c
Confidence 333344557777777777777765433322 234567777777777665 34556677777777888777777 5
Q ss_pred CCCc--cccCCCCcccccCCCCCCCCC
Q 045861 445 IPSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 445 ~p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+|.. ..+++|+.+++++||+.|+||
T Consensus 292 i~~~~~~~l~~L~~L~L~~N~~~~~~~ 318 (353)
T 2z80_A 292 VPDGIFDRLTSLQKIWLHTNPWDCSCP 318 (353)
T ss_dssp CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence 6654 356677777778888888776
|
| >2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.96 E-value=8.9e-28 Score=227.20 Aligned_cols=279 Identities=19% Similarity=0.250 Sum_probs=208.7
Q ss_pred cEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCe
Q 045861 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEY 217 (508)
Q Consensus 138 ~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~ 217 (508)
+.++.+++.++ .+|..+ .+++++|++++|.+..++. ..|..+++|++|++++|.++..
T Consensus 10 ~~l~c~~~~l~-~ip~~~--~~~l~~L~L~~n~l~~i~~-----~~~~~l~~L~~L~L~~n~l~~~-------------- 67 (306)
T 2z66_A 10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPH-----GVFDKLTQLTKLSLSSNGLSFK-------------- 67 (306)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCCCCT-----TTTTTCTTCSEEECCSSCCCEE--------------
T ss_pred CEEEcCCCCcc-cCCCCC--CCCCCEEECCCCccCccCH-----hHhhccccCCEEECCCCccCcc--------------
Confidence 34555555555 333322 2456666666666554332 2245555566666655554421
Q ss_pred eEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccc-hhhhCCCCCcEEEeeCce
Q 045861 218 IYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP-DSLCNLGRLVELQFYDNK 296 (508)
Q Consensus 218 L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~ 296 (508)
+..+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|.
T Consensus 68 ---------~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~ 137 (306)
T 2z66_A 68 ---------GCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137 (306)
T ss_dssp ---------EEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSC
T ss_pred ---------cCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCc
Confidence 112344556778888888888877 456668888889999998888875544 568888999999999998
Q ss_pred eeeeCCcccCCCCCCCEEEcCCCcccc-cCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch
Q 045861 297 LFGSIPACIGKLSPLRNLLLHSNVLTY-VIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT 375 (508)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~ 375 (508)
+.+..+..+..+++|++|++++|.+.+ ..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+.
T Consensus 138 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 217 (306)
T 2z66_A 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTF 217 (306)
T ss_dssp CEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSG
T ss_pred CCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChh
Confidence 888888888889999999999999886 5677888999999999999999987788899999999999999999977777
Q ss_pred hhhcCCCCCEEECcCCcccccCcccccCCC-CCCEEECCCCcccccCc--ccccCCCCCCEEeCCCCcceecCCCc
Q 045861 376 VIGGLSNLAFFSLAYNKLQGSIPESLGDLR-SLEFLDLSNNSFSGFIP--RSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 376 ~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~~~~~--~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
.+..+++|++|++++|.+++..+..+..++ +|++|++++|.+...-+ .....+...+.+.+..+.+.+..|..
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~~~~~~~~C~~p~~ 293 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSD 293 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGBSCGGGCBEEESGG
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhhccccccccCCchh
Confidence 889999999999999999988888888884 99999999999986322 11233445666777788888777765
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.96 E-value=3.7e-28 Score=227.32 Aligned_cols=233 Identities=22% Similarity=0.215 Sum_probs=138.6
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCce-eeeeCCcccCCCCCCCEEE
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK-LFGSIPACIGKLSPLRNLL 315 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~ 315 (508)
+++++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 345555555555554444445555555555555555554445555555555555555554 4444455555566666666
Q ss_pred cCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc
Q 045861 316 LHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 316 l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
+++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.+++
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~ 191 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAH 191 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccc
Confidence 66666665555556666666666666666665555556666666666666666665444456666677777777777666
Q ss_pred cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
..+..+..+++|+.|++++|++++..++.+..+++|++|++++|++.+..+.......++.+....+.+.|.-|
T Consensus 192 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p 265 (285)
T 1ozn_A 192 VHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLP 265 (285)
T ss_dssp ECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEES
T ss_pred cCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCc
Confidence 66666666677777777777776655566666777777777777766544443333444445555555555544
|
| >3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* | Back alignment and structure |
|---|
Probab=99.96 E-value=1e-30 Score=270.91 Aligned_cols=397 Identities=15% Similarity=0.110 Sum_probs=278.1
Q ss_pred CcCCcCCCCCcEEEcccCCCC---CCCCcccC------------CCCCCCeEEccCCccccCCchhccC-CC-CCCEeeC
Q 045861 38 PRNLWQCQELIAISLSHNQLT---GLIPRDIG------------NLTSARALLLGNNNLIGEIPHEIGN-LH-NLEYLVL 100 (508)
Q Consensus 38 ~~~~~~~~~L~~L~L~~n~l~---~~~~~~~~------------~l~~L~~L~L~~n~l~~~~~~~~~~-l~-~L~~L~L 100 (508)
+..+..+++|++|+++++... +..|..++ .+++|++|+|++|.+.+..+..+.. ++ +|++|++
T Consensus 66 ~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L 145 (592)
T 3ogk_B 66 DRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKL 145 (592)
T ss_dssp HHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEE
T ss_pred HHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEEC
Confidence 344567889999999886431 22333333 6889999999999887666666665 34 4999999
Q ss_pred cccc-CCCC-------CCCCCCEEEccCCcccccC----CccccCCCCCcEEEccCcccc----cccChhhcCCCCCCEE
Q 045861 101 ENNN-FDGP-------RHSNLERLYLERNNFSGTI----PSFIFNASKLSILGIRTNSFS----GTIPSTIANLRNLQWL 164 (508)
Q Consensus 101 ~~n~-~~~~-------~~~~L~~L~l~~~~~~~~~----~~~~~~l~~L~~L~l~~~~i~----~~~~~~~~~l~~L~~L 164 (508)
++|. +... .+++|++|++++|.+++.. +.....+++|++|++++|.++ ..++..+..+++|++|
T Consensus 146 ~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L 225 (592)
T 3ogk_B 146 DKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSV 225 (592)
T ss_dssp ESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEE
T ss_pred cCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEE
Confidence 9886 2211 5789999999999876553 234456789999999998886 3444556678999999
Q ss_pred eCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCc---cCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcE
Q 045861 165 DLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLH---GILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLIT 241 (508)
Q Consensus 165 ~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~---~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~ 241 (508)
++++|.+..++ ..+..+++|+.|.++..... ......+... ++|+.+.+.++. ...+|..+..+++|++
T Consensus 226 ~L~~~~~~~l~------~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~-~~L~~L~l~~~~-~~~l~~~~~~~~~L~~ 297 (592)
T 3ogk_B 226 KVGDFEILELV------GFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP-RKLCRLGLSYMG-PNEMPILFPFAAQIRK 297 (592)
T ss_dssp ECSSCBGGGGH------HHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC-TTCCEEEETTCC-TTTGGGGGGGGGGCCE
T ss_pred eccCccHHHHH------HHHhhhhHHHhhcccccccccchHHHHHHhhcc-ccccccCccccc-hhHHHHHHhhcCCCcE
Confidence 99998766532 45677888999998753222 1222333333 388888887753 3356677778889999
Q ss_pred EEcccCccccccC-ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeC-----------ceeeee-CCcccCCC
Q 045861 242 MSLGINKLTGSIP-ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD-----------NKLFGS-IPACIGKL 308 (508)
Q Consensus 242 L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-----------n~~~~~-~~~~~~~~ 308 (508)
|++++|.+..... ..+..+++|++|+++++.....++..+..+++|++|++++ +.++.. .......+
T Consensus 298 L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~ 377 (592)
T 3ogk_B 298 LDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGC 377 (592)
T ss_dssp EEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHC
T ss_pred EecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhhC
Confidence 9999988654333 3467889999999984433333444556788999999994 344432 22223457
Q ss_pred CCCCEEEcCCCcccccCCccccC-ccCCcEEEcc----CCccccc-----cCccccCCCCCcEEECCCCc--CCCccchh
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLS-LRDILVFNFS----SNSLNGS-----LPLDIGNLKVVVGIDLSRNN--LSDSIPTV 376 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~----~n~l~~~-----~~~~~~~l~~L~~L~l~~n~--l~~~~~~~ 376 (508)
++|++|+++.+.+++.....+.. +++|++|+++ .+.+++. ++..+..+++|+.|+++.|. +++..+..
T Consensus 378 ~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~ 457 (592)
T 3ogk_B 378 QELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSY 457 (592)
T ss_dssp TTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHH
T ss_pred ccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHH
Confidence 89999999888887655544444 7889999996 5566642 33346678899999997654 66555554
Q ss_pred hh-cCCCCCEEECcCCccccc-CcccccCCCCCCEEECCCCccccc-CcccccCCCCCCEEeCCCCcce
Q 045861 377 IG-GLSNLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSGF-IPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 377 ~~-~l~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~-~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+. .+++|++|++++|.+++. ++..+..+++|++|++++|.+++. ++..+..+++|++|++++|+++
T Consensus 458 ~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it 526 (592)
T 3ogk_B 458 IGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526 (592)
T ss_dssp HHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCC
T ss_pred HHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCC
Confidence 44 488999999999998763 345557789999999999998754 3344467899999999999976
|
| >2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.1e-28 Score=235.13 Aligned_cols=257 Identities=17% Similarity=0.146 Sum_probs=168.0
Q ss_pred CCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEcc
Q 045861 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLY 269 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~ 269 (508)
|++|++++|.+++..+..+...+ +|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+.++++|++|+++
T Consensus 54 L~~L~l~~n~i~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 132 (353)
T 2z80_A 54 VKSLDLSNNRITYISNSDLQRCV-NLQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLL 132 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCT-TCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECT
T ss_pred CcEEECCCCcCcccCHHHhccCC-CCCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECC
Confidence 44444444444433333333332 44444444444444444455566666666666666664444446666677777777
Q ss_pred CCcCccccc-hhhhCCCCCcEEEeeCc-eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCcccc
Q 045861 270 KNKLEGSIP-DSLCNLGRLVELQFYDN-KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG 347 (508)
Q Consensus 270 ~n~l~~~~~-~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~ 347 (508)
+|.+.+... ..+..+++|++|++++| .+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.++.
T Consensus 133 ~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~ 212 (353)
T 2z80_A 133 GNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHIL 212 (353)
T ss_dssp TCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTT
T ss_pred CCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCcccc
Confidence 776663332 35666777777777776 3555555666777777777777777777666777777777777777777764
Q ss_pred ccCccccCCCCCcEEECCCCcCCCccchhh---hcCCCCCEEECcCCcccc----cCcccccCCCCCCEEECCCCccccc
Q 045861 348 SLPLDIGNLKVVVGIDLSRNNLSDSIPTVI---GGLSNLAFFSLAYNKLQG----SIPESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
.....+..+++|+.|++++|.+.+..+..+ ...+.++.++++++.+++ .+|..+..+++|++|++++|+++..
T Consensus 213 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i 292 (353)
T 2z80_A 213 LLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSV 292 (353)
T ss_dssp HHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCC
T ss_pred chhhhhhhcccccEEECCCCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCcc
Confidence 433344457777888888887775443332 346778888888888775 4567788899999999999999965
Q ss_pred CcccccCCCCCCEEeCCCCcceecCCC
Q 045861 421 IPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 421 ~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
.+..|..+++|++|++++|++.+.+|.
T Consensus 293 ~~~~~~~l~~L~~L~L~~N~~~~~~~~ 319 (353)
T 2z80_A 293 PDGIFDRLTSLQKIWLHTNPWDCSCPR 319 (353)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred CHHHHhcCCCCCEEEeeCCCccCcCCC
Confidence 555568999999999999999876663
|
| >3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A | Back alignment and structure |
|---|
Probab=99.95 E-value=7.4e-27 Score=233.12 Aligned_cols=228 Identities=21% Similarity=0.176 Sum_probs=117.4
Q ss_pred CCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEE
Q 045861 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLY 267 (508)
Q Consensus 188 ~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~ 267 (508)
++++.|++++|.+++..+..+..++ +|++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+++|++|+
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~-~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 153 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLH-HLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELW 153 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCT-TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEE
T ss_pred CCccEEECcCCcCceECHHHcCCCC-CCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEE
Confidence 3455555555555544444444443 555555555555544445555555555555555555544444455555555555
Q ss_pred ccCCcCccccchhhhCCCCCcEEEeeCc-eeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccc
Q 045861 268 LYKNKLEGSIPDSLCNLGRLVELQFYDN-KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 268 l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 346 (508)
+++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.+... ..+..+++|++|++++|.++
T Consensus 154 L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~ 231 (452)
T 3zyi_A 154 LRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFP 231 (452)
T ss_dssp CCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCS
T ss_pred CCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCccccc--ccccccccccEEECcCCcCc
Confidence 5555555444444555555555555553 23323333445555555555555555433 12444555555555555555
Q ss_pred cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc
Q 045861 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+..+..+..+++|+.|++++|++.+..+..|..+++|+.|++++|++++..+..|..+++|+.|++++|.+.
T Consensus 232 ~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 232 EIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp EECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred ccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 444555555555555555555555444555555555555555555555444444455555555555555543
|
| >3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.95 E-value=7.7e-27 Score=232.17 Aligned_cols=231 Identities=21% Similarity=0.207 Sum_probs=117.8
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEc
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL 316 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 316 (508)
++++.|++++|.+....+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.++...+..+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555444445555555555555555555444445555555555555555554444444555555555555
Q ss_pred CCCcccccCCccccCccCCcEEEccCC-ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccc
Q 045861 317 HSNVLTYVIPSTFLSLRDILVFNFSSN-SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 317 ~~n~~~~~~~~~~~~~~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~ 395 (508)
++|.+....+..|..+++|++|++++| .+....+..+..+++|++|++++|.++ .+| .+..+++|++|++++|.+++
T Consensus 144 ~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 144 RNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSA 221 (440)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCE
T ss_pred CCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCc
Confidence 555555554445555555555555553 233222334455555555555555555 222 24445555555555555554
Q ss_pred cCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCC
Q 045861 396 SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 396 ~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~ 469 (508)
..+..|..+++|+.|++++|++++..+..|.++++|++|++++|++++..+.. ..+.+|+.+++++|||.|+|.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~CdC~ 296 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNCNCD 296 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEECSST
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCccCCCC
Confidence 44555555555555555555555555555555555555555555555222221 234445555555555555554
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.95 E-value=3.3e-27 Score=224.76 Aligned_cols=224 Identities=20% Similarity=0.260 Sum_probs=151.0
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
.++.|+++++.+. .+|..+..+++|++|++++|.+. .+|..++.+++|++|++++|.+. .+|..+..+++|++|+++
T Consensus 82 ~l~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~ 158 (328)
T 4fcg_A 82 GRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIR 158 (328)
T ss_dssp TCCEEEEESSCCS-SCCSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEE
T ss_pred ceeEEEccCCCch-hcChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECC
Confidence 5556666665555 44555556666666666666666 55666666666666666666666 556666666666666666
Q ss_pred CceeeeeCCcccC---------CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 294 DNKLFGSIPACIG---------KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 294 ~n~~~~~~~~~~~---------~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
+|.+.+.+|..+. .+++|++|++++|.++ ..+..+..+++|++|++++|.++ .+|..+..+++|++|++
T Consensus 159 ~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~-~l~~~l~~l~~L~~L~L 236 (328)
T 4fcg_A 159 ACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDL 236 (328)
T ss_dssp EETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCC-CCCGGGGGCTTCCEEEC
T ss_pred CCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCC-cCchhhccCCCCCEEEC
Confidence 6655555555443 3677777777777766 44455666777777777777776 34555667777777777
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|++.+.+|+.+..+++|+.+++..+.+.
T Consensus 237 s~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 237 RGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp TTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred cCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 777777677777777777777777777777677777777777777777777777777777777777777777766554
|
| >1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4.8e-27 Score=219.74 Aligned_cols=234 Identities=22% Similarity=0.233 Sum_probs=164.8
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCc-CccccchhhhCCCCCcEEEe
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK-LEGSIPDSLCNLGRLVELQF 292 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L 292 (508)
++++|+++++.+.+..+..+..+++|++|++++|.+.+..+..+.++++|++|++++|. +....+..+..+++|++|++
T Consensus 33 ~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l 112 (285)
T 1ozn_A 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (285)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEEC
Confidence 45555555555554444556666677777777777666556667777777777777775 55555666777777777777
Q ss_pred eCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCc
Q 045861 293 YDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 293 ~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 372 (508)
++|.+.+..+..+..+++|++|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+.
T Consensus 113 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~ 192 (285)
T 1ozn_A 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (285)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCccccc
Confidence 77777666666677777788888887777776666677778888888888887766666677788888888888888877
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
.+..+..+++|++|++++|.+++..+..+..+++|+.|++++|.+....+.. .....++.+..+.+.+.+..|..
T Consensus 193 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGG
T ss_pred CHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchH
Confidence 7777888888888888888888666667788888888888888877532211 01122444556677777777765
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.95 E-value=1.2e-29 Score=263.05 Aligned_cols=427 Identities=13% Similarity=0.113 Sum_probs=262.9
Q ss_pred CCCchhhhhCCCCCcEEecCCCcCCC---CCCc------------CCcCCCCCcEEEcccCCCCCCCCcccC-CCCCCCe
Q 045861 10 GSLPDDMCQHLPRLQALDINNNHVTG---PVPR------------NLWQCQELIAISLSHNQLTGLIPRDIG-NLTSARA 73 (508)
Q Consensus 10 ~~l~~~~~~~~~~L~~L~l~~~~~~~---~~~~------------~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~ 73 (508)
+..|..++.++++|++|+++++.... ..|. .+..+++|++|++++|.+++..+..+. .+++|++
T Consensus 55 ~~~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~ 134 (594)
T 2p1m_B 55 AVSPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKV 134 (594)
T ss_dssp SSCHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCE
T ss_pred ccCHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcE
Confidence 45677778899999999999875321 1111 123678999999999988766555565 6899999
Q ss_pred EEccCC-ccccC-CchhccCCCCCCEeeCccccCCCC----------CCCCCCEEEccCCc--cccc-CCccccCCCCCc
Q 045861 74 LLLGNN-NLIGE-IPHEIGNLHNLEYLVLENNNFDGP----------RHSNLERLYLERNN--FSGT-IPSFIFNASKLS 138 (508)
Q Consensus 74 L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~----------~~~~L~~L~l~~~~--~~~~-~~~~~~~l~~L~ 138 (508)
|++++| .+... ++..+.++++|++|++++|.+++. .+++|++|++++|. +... +...+..+++|+
T Consensus 135 L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~ 214 (594)
T 2p1m_B 135 LVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLK 214 (594)
T ss_dssp EEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCC
T ss_pred EeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCc
Confidence 999998 44432 444556899999999999986543 46688999988886 2211 112234568899
Q ss_pred EEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCC-CCcccccccCCCCCCEE-EccCccCccCCChhhhhcccccC
Q 045861 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTS-ELSFLSSLRNCRNLKVI-DLTGNQLHGILPSSMGNLSTSLE 216 (508)
Q Consensus 139 ~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-~~~~~~~l~~~~~L~~L-~l~~~~~~~~~~~~~~~~~~~L~ 216 (508)
+|++++|.....++..+..+++|++|+++.+...-... .......+.++++|+.+ .+.+... ..++..+... ++|+
T Consensus 215 ~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~-~~L~ 292 (594)
T 2p1m_B 215 SLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVP-AYLPAVYSVC-SRLT 292 (594)
T ss_dssp EEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHH-TTCC
T ss_pred EEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHhcCCCcccccCCcccch-hhHHHHHHhh-CCCC
Confidence 99998883323466777788888888876553210000 00011346677888887 3333221 2233333333 3888
Q ss_pred eeEccCCcCcccC-ChhhhcCCCCcEEEcccCccccc-cCccccCCCCCCcEEccC---------CcCccccchhh-hCC
Q 045861 217 YIYMPYCRRSGRI-PEEIGNLINLITMSLGINKLTGS-IPISLGKLQKLQGLYLYK---------NKLEGSIPDSL-CNL 284 (508)
Q Consensus 217 ~L~l~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~l~~---------n~l~~~~~~~~-~~l 284 (508)
+|++++|.+.+.. ...+..+++|++|++++| +... .+.....+++|++|++.+ +.+++.....+ ..+
T Consensus 293 ~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~ 371 (594)
T 2p1m_B 293 TLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC 371 (594)
T ss_dssp EEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC
T ss_pred EEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhc
Confidence 8888888754322 223457788888888877 3321 222233477888888833 34443222222 347
Q ss_pred CCCcEEEeeCceeeeeCCcccC-CCCCCCEEEcC--C----CcccccC-----CccccCccCCcEEEccCCccccccCcc
Q 045861 285 GRLVELQFYDNKLFGSIPACIG-KLSPLRNLLLH--S----NVLTYVI-----PSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~--~----n~~~~~~-----~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
++|++|.+..+.+++.....+. .+++|+.|+++ + +.++... ...+..+++|++|++++ .++......
T Consensus 372 ~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~ 450 (594)
T 2p1m_B 372 PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEY 450 (594)
T ss_dssp TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHH
T ss_pred hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHH
Confidence 7888887777776544433333 46788888887 3 3343211 11245567788888866 454433333
Q ss_pred ccC-CCCCcEEECCCCcCCCccchhh-hcCCCCCEEECcCCcccccCcc-cccCCCCCCEEECCCCcccccCcccc-cCC
Q 045861 353 IGN-LKVVVGIDLSRNNLSDSIPTVI-GGLSNLAFFSLAYNKLQGSIPE-SLGDLRSLEFLDLSNNSFSGFIPRSF-EKL 428 (508)
Q Consensus 353 ~~~-l~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l 428 (508)
+.. +++|+.|++++|.+++.....+ .++++|++|++++|.+++.... ....+++|+.|++++|+++......+ ..+
T Consensus 451 l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~l 530 (594)
T 2p1m_B 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKM 530 (594)
T ss_dssp HHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHC
T ss_pred HHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhC
Confidence 433 6778888888877765555444 5677888888888877644332 33446778888888887754333333 445
Q ss_pred CCCCEEeCCCCc
Q 045861 429 LYLEYLNLSFNR 440 (508)
Q Consensus 429 ~~L~~L~l~~n~ 440 (508)
|.|+...+..+.
T Consensus 531 p~l~i~~~~~~~ 542 (594)
T 2p1m_B 531 PKLNVEVIDERG 542 (594)
T ss_dssp TTEEEEEECSSS
T ss_pred CCCEEEEecCCC
Confidence 666655555544
|
| >4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} | Back alignment and structure |
|---|
Probab=99.94 E-value=4.4e-26 Score=216.98 Aligned_cols=227 Identities=18% Similarity=0.197 Sum_probs=157.9
Q ss_pred CCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCC
Q 045861 158 LRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLI 237 (508)
Q Consensus 158 l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~ 237 (508)
.++++.|++++|.+..++. .+..+++|++|++++|.+. .+|.. +..++
T Consensus 80 ~~~l~~L~L~~n~l~~lp~------~l~~l~~L~~L~L~~n~l~-~lp~~-------------------------~~~l~ 127 (328)
T 4fcg_A 80 QPGRVALELRSVPLPQFPD------QAFRLSHLQHMTIDAAGLM-ELPDT-------------------------MQQFA 127 (328)
T ss_dssp STTCCEEEEESSCCSSCCS------CGGGGTTCSEEEEESSCCC-CCCSC-------------------------GGGGT
T ss_pred ccceeEEEccCCCchhcCh------hhhhCCCCCEEECCCCCcc-chhHH-------------------------HhccC
Confidence 3556666666665554332 2334555555555555555 34444 44444
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhh---------hCCCCCcEEEeeCceeeeeCCcccCCC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSL---------CNLGRLVELQFYDNKLFGSIPACIGKL 308 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---------~~l~~L~~L~L~~n~~~~~~~~~~~~~ 308 (508)
+|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+ ..+++|++|++++|.+. .+|..+..+
T Consensus 128 ~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l 205 (328)
T 4fcg_A 128 GLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANL 205 (328)
T ss_dssp TCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGC
T ss_pred CCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCC
Confidence 5555555555444 344445555555555555544444444333 34778888888888776 666777778
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEEC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSL 388 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 388 (508)
++|++|++++|.+.+. +..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++
T Consensus 206 ~~L~~L~L~~N~l~~l-~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L 284 (328)
T 4fcg_A 206 QNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDL 284 (328)
T ss_dssp TTCCEEEEESSCCCCC-CGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEEC
T ss_pred CCCCEEEccCCCCCcC-chhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeC
Confidence 8888888888888754 345778888888888888888888888888899999999998888888888889999999999
Q ss_pred cCCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 389 AYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 389 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
++|.+.+.+|..+..+++|+.+++..+.+..
T Consensus 285 ~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~~ 315 (328)
T 4fcg_A 285 RGCVNLSRLPSLIAQLPANCIILVPPHLQAQ 315 (328)
T ss_dssp TTCTTCCCCCGGGGGSCTTCEEECCGGGSCC
T ss_pred CCCCchhhccHHHhhccCceEEeCCHHHHHH
Confidence 9998888899999999999999988776664
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-27 Score=225.05 Aligned_cols=248 Identities=20% Similarity=0.182 Sum_probs=167.7
Q ss_pred ccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCc-ccCChhhh-------cCCCCcEEEcccCccccccCc
Q 045861 184 LRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRS-GRIPEEIG-------NLINLITMSLGINKLTGSIPI 255 (508)
Q Consensus 184 l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~ 255 (508)
+...++|+.+++++|.+ ..|..+.. .++.|+++++.+. ..++..+. .+++|++|++++|.+.+..|.
T Consensus 39 ~~~~~~L~~l~l~~n~l--~~p~~~~~---~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 113 (312)
T 1wwl_A 39 YGGGRSLEYLLKRVDTE--ADLGQFTD---IIKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPP 113 (312)
T ss_dssp EEEEEECTTHHHHCCTT--CCCHHHHH---HHHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCC
T ss_pred EccCCCceeEeeccccc--ccHHHHHH---HHhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHH
Confidence 33445677777777777 45555543 3777777777763 34555444 678888888888888877777
Q ss_pred cc--cCCCCCCcEEccCCcCccccchhhhCC-----CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCccccc--CC
Q 045861 256 SL--GKLQKLQGLYLYKNKLEGSIPDSLCNL-----GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYV--IP 326 (508)
Q Consensus 256 ~l--~~~~~L~~L~l~~n~l~~~~~~~~~~l-----~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~ 326 (508)
.+ ..+++|++|++++|.+.+. +..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+. .+
T Consensus 114 ~~~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~ 192 (312)
T 1wwl_A 114 PLLEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLI 192 (312)
T ss_dssp CSSSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHH
T ss_pred HHHHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHH
Confidence 65 7788888888888888765 6666665 7888888888888766667777788888888888876543 11
Q ss_pred c--cccCccCCcEEEccCCcccc---ccCccccCCCCCcEEECCCCcCCCccc-hhhhcCCCCCEEECcCCcccccCccc
Q 045861 327 S--TFLSLRDILVFNFSSNSLNG---SLPLDIGNLKVVVGIDLSRNNLSDSIP-TVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 327 ~--~~~~~~~L~~L~L~~n~l~~---~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
. .+..+++|++|++++|++++ .....+..+++|++|++++|++.+..| ..+..+++|++|++++|.++ .+|..
T Consensus 193 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~ 271 (312)
T 1wwl_A 193 SALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKG 271 (312)
T ss_dssp HHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSS
T ss_pred HHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhh
Confidence 1 23666777777777777762 112233456677777777777775543 34455677777777777776 55555
Q ss_pred ccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+. ++|++|++++|++++. |. +..+++|++|++++|+++
T Consensus 272 ~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 272 LP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp CC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTT
T ss_pred cc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCC
Confidence 54 6677777777777754 43 666777777777777765
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.94 E-value=1.4e-25 Score=208.70 Aligned_cols=208 Identities=24% Similarity=0.321 Sum_probs=125.1
Q ss_pred CCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEcc
Q 045861 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFS 341 (508)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~ 341 (508)
++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45555665555554444455556666666666665555555555666666666666666665555556666666666666
Q ss_pred CCccccccCccccCCCCCcEEECCCCcCCCc-cchhhhcCCCCCEEECcCCcccccCcccccCCCCCC----EEECCCCc
Q 045861 342 SNSLNGSLPLDIGNLKVVVGIDLSRNNLSDS-IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLE----FLDLSNNS 416 (508)
Q Consensus 342 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~----~L~L~~n~ 416 (508)
+|.+.+..+..+..+++|++|++++|.+.+. +|..+..+++|++|++++|++++..+..+..+++|+ .|++++|.
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~ 188 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSC
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCc
Confidence 6666655444566666666666666666642 356666666666666666666655555555555555 66677776
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCc--cccCCCCcccccCCCCCCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
+++..+..+.. .+|++|++++|++++ +|.. ..+.+++.+++++||+.|+||.+
T Consensus 189 l~~~~~~~~~~-~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 189 MNFIQPGAFKE-IRLKELALDTNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCEECTTSSCS-CCEEEEECCSSCCSC-CCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred ccccCccccCC-CcccEEECCCCceee-cCHhHhcccccccEEEccCCcccccCCch
Confidence 66554444433 366777777777663 3332 34566666777777777777643
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-26 Score=217.96 Aligned_cols=257 Identities=16% Similarity=0.127 Sum_probs=194.7
Q ss_pred CCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEc
Q 045861 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYL 268 (508)
Q Consensus 189 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 268 (508)
.++..+++.+.+.......+ ...+++++|++++|.+.+..|..+..+++|++|++++|.+.+..+ +..+++|++|++
T Consensus 11 ~l~i~~ls~~~l~~~~~~~~-~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~L 87 (317)
T 3o53_A 11 RYKIEKVTDSSLKQALASLR-QSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDL 87 (317)
T ss_dssp EEEEESCCTTTHHHHHHHHH-TTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTCTTCCEEEC
T ss_pred ceeEeeccccchhhhHHHHh-ccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhcCCCCEEEC
Confidence 35555666665543333333 334489999999998888777888899999999999998875543 888899999999
Q ss_pred cCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc
Q 045861 269 YKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS 348 (508)
Q Consensus 269 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~ 348 (508)
++|.+++.. ..++|++|++++|.+.+..+. .+++|++|++++|.+....+..+..+++|++|++++|.+++.
T Consensus 88 s~n~l~~l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 88 NNNYVQELL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp CSSEEEEEE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred cCCcccccc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 999887422 347899999999988765443 357899999999998888777888888999999999988876
Q ss_pred cCccc-cCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccC
Q 045861 349 LPLDI-GNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEK 427 (508)
Q Consensus 349 ~~~~~-~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~ 427 (508)
.+..+ ..+++|++|++++|.+++. +. ...+++|++|++++|.+++ ++..+..+++|+.|++++|++++ +|..+..
T Consensus 160 ~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~ 235 (317)
T 3o53_A 160 NFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLVL-IEKALRF 235 (317)
T ss_dssp EGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCCE-ECTTCCC
T ss_pred cHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCcccc-hhhHhhc
Confidence 66665 4678899999999988854 32 3348889999999999884 44458888899999999998884 5667888
Q ss_pred CCCCCEEeCCCCcce-ecCCCc-cccCCCCccccc
Q 045861 428 LLYLEYLNLSFNRLK-GEIPSG-ESFANFSDNSFM 460 (508)
Q Consensus 428 l~~L~~L~l~~n~l~-~~~p~~-~~~~~l~~l~l~ 460 (508)
+++|+.|++++|++. +.+|.. ..++.++.+++.
T Consensus 236 l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~ 270 (317)
T 3o53_A 236 SQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (317)
T ss_dssp CTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence 889999999999987 444443 234556666666
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.94 E-value=2e-25 Score=208.50 Aligned_cols=207 Identities=26% Similarity=0.257 Sum_probs=135.7
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIL 336 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 336 (508)
+..++++++++++++.++ .+|..+. ++++.|++++|.+.+..+..+..+++|++|++++|.++..... ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 344455555555555554 2332221 3556666666665555555566666666666666666554332 4566677
Q ss_pred EEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
+|++++|.++ .+|..+..+++|++|++++|++++..+..|..+++|++|++++|.++...+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 7777777666 555566677777777777777776666667777777777777777776656667777778888888887
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
+++..+..|..+++|++|++++|+++ .+|.. .....++.+.+.+|||.|+|..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c~~ 213 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcCcc
Confidence 77666666777777888888888777 55554 3455677777888888887753
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.93 E-value=5.2e-25 Score=203.96 Aligned_cols=183 Identities=28% Similarity=0.371 Sum_probs=106.6
Q ss_pred CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 286 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
++++|++++|.+.+..+..+..+++|++|++++|.++...+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~ 117 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLD 117 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECC
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECC
Confidence 45555555555544444445555555555555555555544455555556666666665554444455556666666666
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecC
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 445 (508)
+|.+++..+..|..+++|++|++++|.+++..+..|..+++|+.|++++|.+++..+..|..+++|++|++++|++++ +
T Consensus 118 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~ 196 (270)
T 2o6q_A 118 RNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKR-V 196 (270)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSC-C
T ss_pred CCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCc-C
Confidence 666665555555666666666666666664444455666666666666666665555556666666666666666653 3
Q ss_pred CCc--cccCCCCcccccCCCCCCCCC
Q 045861 446 PSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 446 p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|.. ..+.+|+.+++++|||.|+|+
T Consensus 197 ~~~~~~~l~~L~~L~l~~N~~~c~c~ 222 (270)
T 2o6q_A 197 PEGAFDSLEKLKMLQLQENPWDCTCN 222 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCBCCSSS
T ss_pred CHHHhccccCCCEEEecCCCeeCCCc
Confidence 332 234566666666666667665
|
| >3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.3e-26 Score=220.04 Aligned_cols=241 Identities=20% Similarity=0.182 Sum_probs=150.1
Q ss_pred cCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
..+++|++|++++|.+++..+..+..++ +|++|++++|.+.+..+ +..+++|++|++++|.+++.. ..++|+
T Consensus 31 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~ 102 (317)
T 3o53_A 31 QSAWNVKELDLSGNPLSQISAADLAPFT-KLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIE 102 (317)
T ss_dssp TTGGGCSEEECTTSCCCCCCHHHHTTCT-TCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCC
T ss_pred ccCCCCCEEECcCCccCcCCHHHhhCCC-cCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcC
Confidence 3445667777777766665556665554 67777777766655443 566667777777777665322 236677
Q ss_pred cEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccc-cCccCCcEEEccCC
Q 045861 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTF-LSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~-~~~~~L~~L~L~~n 343 (508)
+|++++|.+.+..+. .+++|++|++++|.+.+..+..+..+++|++|++++|.+....+..+ ..+++|++|++++|
T Consensus 103 ~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N 179 (317)
T 3o53_A 103 TLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYN 179 (317)
T ss_dssp EEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTS
T ss_pred EEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCC
Confidence 777777766643322 34566777777776665555566666677777777776666555444 35666777777777
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc-ccCc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS-GFIP 422 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~-~~~~ 422 (508)
.+++.. ....+++|++|++++|.+++ ++..+..+++|++|++++|.++ .+|..+..+++|+.|++++|.+. +..+
T Consensus 180 ~l~~~~--~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 180 FIYDVK--GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp CCCEEE--CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHH
T ss_pred cCcccc--cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHH
Confidence 666432 22236667777777777663 3334666677777777777766 45555666667777777777666 4555
Q ss_pred ccccCCCCCCEEeCCCCc
Q 045861 423 RSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 423 ~~l~~l~~L~~L~l~~n~ 440 (508)
..+..++.|+.+++++|+
T Consensus 256 ~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 256 DFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp HHHHTCHHHHHHHHHHHH
T ss_pred HHHhccccceEEECCCch
Confidence 666666666666666443
|
| >2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-28 Score=255.83 Aligned_cols=395 Identities=12% Similarity=0.096 Sum_probs=277.6
Q ss_pred hhhCCCCCcEEecCCCcCCCCCCcCCc-CCCCCcEEEcccC-CCCCC-CCcccCCCCCCCeEEccCCccccCCchhc---
Q 045861 16 MCQHLPRLQALDINNNHVTGPVPRNLW-QCQELIAISLSHN-QLTGL-IPRDIGNLTSARALLLGNNNLIGEIPHEI--- 89 (508)
Q Consensus 16 ~~~~~~~L~~L~l~~~~~~~~~~~~~~-~~~~L~~L~L~~n-~l~~~-~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--- 89 (508)
++..+++|++|+++++.+.+..+..+. .+++|++|++++| .++.. ++..+.++++|++|++++|.+.+..+..+
T Consensus 100 l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 100 MSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred HHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 446789999999999998765555554 6899999999998 55432 33344579999999999999876554444
Q ss_pred -cCCCCCCEeeCcccc--CCCC-------CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCc-------ccccccC
Q 045861 90 -GNLHNLEYLVLENNN--FDGP-------RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTN-------SFSGTIP 152 (508)
Q Consensus 90 -~~l~~L~~L~L~~n~--~~~~-------~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~-------~i~~~~~ 152 (508)
..+++|++|++++|. +... .+++|++|++++|.....++..+..+++|++|++..+ .+. .++
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~ 258 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLS 258 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHH
Confidence 367899999999987 2211 4699999999998433346777888999999996554 333 344
Q ss_pred hhhcCCCCCCEE-eCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCCh
Q 045861 153 STIANLRNLQWL-DLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPE 231 (508)
Q Consensus 153 ~~~~~l~~L~~L-~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~ 231 (508)
..+..+++|+.+ .+.+..... ....+..+++|+.|++++|.++......+....++|+.|++.+|.....++.
T Consensus 259 ~~l~~~~~L~~Ls~~~~~~~~~------l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~ 332 (594)
T 2p1m_B 259 VALSGCKELRCLSGFWDAVPAY------LPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEV 332 (594)
T ss_dssp HHHHTCTTCCEEECCBTCCGGG------GGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHH
T ss_pred HHHhcCCCcccccCCcccchhh------HHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCccCHHHHHH
Confidence 568899999999 343322111 1123446789999999999876543333333345999999998822222333
Q ss_pred hhhcCCCCcEEEccc---------CccccccCccc-cCCCCCCcEEccCCcCccccchhhh-CCCCCcEEEee--C----
Q 045861 232 EIGNLINLITMSLGI---------NKLTGSIPISL-GKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFY--D---- 294 (508)
Q Consensus 232 ~l~~l~~L~~L~l~~---------~~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~--~---- 294 (508)
....+++|++|++.+ +.++......+ ..+++|++|.+..+.+++.....+. .+++|+.|+++ +
T Consensus 333 l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~ 412 (594)
T 2p1m_B 333 LASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAP 412 (594)
T ss_dssp HHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCC
T ss_pred HHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCc
Confidence 344689999999944 33432222223 3489999999988888765555554 58999999999 3
Q ss_pred ceeee-----eCCcccCCCCCCCEEEcCCCcccccCCccccC-ccCCcEEEccCCccccccCccc-cCCCCCcEEECCCC
Q 045861 295 NKLFG-----SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS-LRDILVFNFSSNSLNGSLPLDI-GNLKVVVGIDLSRN 367 (508)
Q Consensus 295 n~~~~-----~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n 367 (508)
+.++. .++..+..+++|+.|++++ .+++.....+.. +++|++|++++|.+++.....+ ..+++|++|++++|
T Consensus 413 ~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n 491 (594)
T 2p1m_B 413 DYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDC 491 (594)
T ss_dssp CTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESC
T ss_pred ccccCCchhhHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCC
Confidence 33331 1122356688999999987 555443334443 7899999999999875544444 66899999999999
Q ss_pred cCCCccch-hhhcCCCCCEEECcCCcccccCcccc-cCCCCCCEEECCCCccc
Q 045861 368 NLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESL-GDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 368 ~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~L~~n~~~ 418 (508)
++++.... ....+++|++|++++|+++......+ ..+++++...+..+...
T Consensus 492 ~~~~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 492 PFGDKALLANASKLETMRSLWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp SCCHHHHHHTGGGGGGSSEEEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred CCcHHHHHHHHHhCCCCCEEeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 99755444 34568999999999999975544444 55678877777665433
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=3.7e-26 Score=229.25 Aligned_cols=245 Identities=16% Similarity=0.135 Sum_probs=192.1
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
+|++|++++|.+.+..|..+..+++|++|++++|.+++..+ +..+++|++|++++|.+++.. ..++|++|+++
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~-----~~~~L~~L~L~ 107 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIETLHAA 107 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEE-----ECTTCCEEECC
T ss_pred CccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCC-----CCCCcCEEECc
Confidence 67777777777776666777888888888888888875544 778888888888888877432 23788899999
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcccc-CCCCCcEEECCCCcCCCc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG-NLKVVVGIDLSRNNLSDS 372 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~-~l~~L~~L~l~~n~l~~~ 372 (508)
+|.+.+..+. .+++|+.|++++|.+.+..+..+..+++|++|++++|.+++..|..+. .+++|+.|++++|.+++.
T Consensus 108 ~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~ 184 (487)
T 3oja_A 108 NNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV 184 (487)
T ss_dssp SSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE
T ss_pred CCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccc
Confidence 8888765543 357899999999999988888888899999999999999887777775 789999999999999855
Q ss_pred cchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce-ecCCCc-cc
Q 045861 373 IPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK-GEIPSG-ES 450 (508)
Q Consensus 373 ~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~-~~~p~~-~~ 450 (508)
+. ...+++|++|++++|.+++. |..+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|.. ..
T Consensus 185 -~~-~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~ 260 (487)
T 3oja_A 185 -KG-QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSK 260 (487)
T ss_dssp -EC-CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTT
T ss_pred -cc-cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHh
Confidence 32 33589999999999999854 4448889999999999999995 5667888999999999999987 344432 23
Q ss_pred cCCCCccccc-------CCCCCCCCCCCC
Q 045861 451 FANFSDNSFM-------GNSFLCGSPNLQ 472 (508)
Q Consensus 451 ~~~l~~l~l~-------~n~~~c~~~~~~ 472 (508)
+..+..+.+. ++++.|+|+...
T Consensus 261 l~~L~~l~~~~~~~~~~~~~~~c~~~~~~ 289 (487)
T 3oja_A 261 NQRVQTVAKQTVKKLTGQNEEECTVPTLG 289 (487)
T ss_dssp CHHHHHHHHHHHHHHTSSSSCCCSSTTCE
T ss_pred CCCCcEEeccccccccCCCcccccCCccc
Confidence 4455556665 889999987543
|
| >1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.1e-26 Score=220.01 Aligned_cols=243 Identities=21% Similarity=0.238 Sum_probs=204.5
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccc-cccCcccc-------CCCCCCcEEccCCcCccccchhh--hC
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT-GSIPISLG-------KLQKLQGLYLYKNKLEGSIPDSL--CN 283 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~-~~~~~~l~-------~~~~L~~L~l~~n~l~~~~~~~~--~~ 283 (508)
+++++++.++.+ .+|..+... |+.|++++|.+. ...+..+. ++++|++|++++|.+.+..|..+ ..
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 899999999988 677666554 889999999984 34555554 78999999999999998888765 89
Q ss_pred CCCCcEEEeeCceeeeeCCcccCCC-----CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc--cCccc--c
Q 045861 284 LGRLVELQFYDNKLFGSIPACIGKL-----SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS--LPLDI--G 354 (508)
Q Consensus 284 l~~L~~L~L~~n~~~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~~~~~--~ 354 (508)
+++|++|++++|.+.+. |..+..+ ++|++|++++|.+.+..+..+..+++|++|++++|++.+. .+..+ .
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~ 198 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPL 198 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTT
T ss_pred CCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhc
Confidence 99999999999999866 7766666 9999999999999999889999999999999999998754 23333 7
Q ss_pred CCCCCcEEECCCCcCCCc---cchhhhcCCCCCEEECcCCcccccCc-ccccCCCCCCEEECCCCcccccCcccccCCCC
Q 045861 355 NLKVVVGIDLSRNNLSDS---IPTVIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430 (508)
Q Consensus 355 ~l~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 430 (508)
.+++|++|++++|++.+. ....+..+++|++|++++|.+++..| ..+..+++|++|++++|+++ .+|..+. ++
T Consensus 199 ~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~ 275 (312)
T 1wwl_A 199 KFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AK 275 (312)
T ss_dssp SCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SE
T ss_pred cCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CC
Confidence 899999999999999832 22445688999999999999997664 55677899999999999999 6666665 89
Q ss_pred CCEEeCCCCcceecCCCccccCCCCcccccCCCCC
Q 045861 431 LEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFL 465 (508)
Q Consensus 431 L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~ 465 (508)
|++|++++|++++ +|....+++|+.+++++|++.
T Consensus 276 L~~L~Ls~N~l~~-~p~~~~l~~L~~L~L~~N~l~ 309 (312)
T 1wwl_A 276 LSVLDLSYNRLDR-NPSPDELPQVGNLSLKGNPFL 309 (312)
T ss_dssp EEEEECCSSCCCS-CCCTTTSCEEEEEECTTCTTT
T ss_pred ceEEECCCCCCCC-ChhHhhCCCCCEEeccCCCCC
Confidence 9999999999985 477667888999999999764
|
| >3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.8e-25 Score=224.19 Aligned_cols=221 Identities=23% Similarity=0.223 Sum_probs=193.5
Q ss_pred cCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEE
Q 045861 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL 314 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 314 (508)
.+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++..+ .++|++|
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L 104 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETL 104 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEE
Confidence 34589999999999998888899999999999999999986555 8999999999999999975432 3899999
Q ss_pred EcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhh-cCCCCCEEECcCCcc
Q 045861 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIG-GLSNLAFFSLAYNKL 393 (508)
Q Consensus 315 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~l 393 (508)
++++|.+.+..+. .+++|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|++|++++|.+
T Consensus 105 ~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 105 HAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp ECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred ECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCcc
Confidence 9999999877654 457899999999999988888999999999999999999988888776 799999999999999
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCC
Q 045861 394 QGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~ 469 (508)
++..+ ...+++|+.|++++|.+++.++ .+..+++|+.|++++|.+++ +|.. ..++++..+++++|++.|+++
T Consensus 182 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 182 YDVKG--QVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CEEEC--CCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred ccccc--cccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcch
Confidence 96532 4468999999999999997655 48899999999999999995 5654 457889999999999998874
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.93 E-value=7.3e-24 Score=216.84 Aligned_cols=115 Identities=27% Similarity=0.311 Sum_probs=68.0
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
+++.|+++++.++ .+|..+. ++|++|++++|+++.+ |. .+++|++|++++|++. .+|. .+++|++|+++
T Consensus 41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~l-p~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls 109 (622)
T 3g06_A 41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTSL-PA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF 109 (622)
T ss_dssp CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSCC-CC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCCC-CC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence 5777777777777 5565543 6777777777777743 33 4677777777777766 3443 45666666666
Q ss_pred cccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcC
Q 045861 102 NNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTS 173 (508)
Q Consensus 102 ~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~ 173 (508)
+|.++ .++. .+++|+.|++++|+++. +|.. +++|++|++++|.+..
T Consensus 110 ~N~l~-------------------~l~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~ 155 (622)
T 3g06_A 110 SNPLT-------------------HLPA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS 155 (622)
T ss_dssp SCCCC-------------------CCCC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC
T ss_pred CCcCC-------------------CCCC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC
Confidence 66554 2222 34555666666655552 3321 2555555555555544
|
| >2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.9e-24 Score=201.03 Aligned_cols=211 Identities=20% Similarity=0.190 Sum_probs=178.0
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEc
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLL 316 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l 316 (508)
+++++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+.+..+..+..+++|++|++
T Consensus 28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 107 (276)
T 2z62_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (276)
T ss_dssp TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEEC
Confidence 46788888888887666667788888888888888887666667888888999999888888777788888999999999
Q ss_pred CCCcccccCCccccCccCCcEEEccCCccccc-cCccccCCCCCcEEECCCCcCCCccchhhhcCCCCC----EEECcCC
Q 045861 317 HSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS-LPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA----FFSLAYN 391 (508)
Q Consensus 317 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~L~L~~n 391 (508)
++|.+....+..+..+++|++|++++|.+++. +|..+..+++|++|++++|++++..+..+..+++|+ +|++++|
T Consensus 108 ~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n 187 (276)
T 2z62_A 108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN 187 (276)
T ss_dssp TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSS
T ss_pred CCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCC
Confidence 99998887777788899999999999999864 588899999999999999999977777777766666 9999999
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
.+++..+..+. ..+|+.|++++|++++..+..+..+++|++|++++|++.+..|..
T Consensus 188 ~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 188 PMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp CCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCCch
Confidence 99966555554 458999999999999887778899999999999999999777654
|
| >3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-23 Score=215.36 Aligned_cols=258 Identities=26% Similarity=0.303 Sum_probs=162.8
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|++++|+++ .+|..++ ++|+.|++++|.++ .+|. .+++|++|++++|+++.+ |. .+++|++|++++|+
T Consensus 45 L~ls~n~L~-~lp~~l~---~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-p~---~l~~L~~L~Ls~N~ 112 (622)
T 3g06_A 45 LNVGESGLT-TLPDCLP---AHITTLVIPDNNLT-SLPA---LPPELRTLEVSGNQLTSL-PV---LPPGLLELSIFSNP 112 (622)
T ss_dssp EECCSSCCS-CCCSCCC---TTCSEEEECSCCCS-CCCC---CCTTCCEEEECSCCCSCC-CC---CCTTCCEEEECSCC
T ss_pred EEecCCCcC-ccChhhC---CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCCCcCCcC-CC---CCCCCCEEECcCCc
Confidence 578999999 9998773 89999999999998 5565 579999999999999854 44 78999999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANL 158 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l 158 (508)
+.+ +|. .+++|++|++++|.++.+ .+++|++|++++|.+++ ++. .+.+|+.|++++|.++. +| ..+
T Consensus 113 l~~-l~~---~l~~L~~L~L~~N~l~~lp~~l~~L~~L~Ls~N~l~~-l~~---~~~~L~~L~L~~N~l~~-l~---~~~ 180 (622)
T 3g06_A 113 LTH-LPA---LPSGLCKLWIFGNQLTSLPVLPPGLQELSVSDNQLAS-LPA---LPSELCKLWAYNNQLTS-LP---MLP 180 (622)
T ss_dssp CCC-CCC---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CC---CCC
T ss_pred CCC-CCC---CCCCcCEEECCCCCCCcCCCCCCCCCEEECcCCcCCC-cCC---ccCCCCEEECCCCCCCC-Cc---ccC
Confidence 884 444 678899999999988754 23555666665555542 222 12455555555555552 33 234
Q ss_pred CCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC
Q 045861 159 RNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN 238 (508)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 238 (508)
++|+.|++++|.+..++.. .++|+.|++++|.++. +|. .+++
T Consensus 181 ~~L~~L~Ls~N~l~~l~~~---------~~~L~~L~L~~N~l~~--------------------------l~~---~~~~ 222 (622)
T 3g06_A 181 SGLQELSVSDNQLASLPTL---------PSELYKLWAYNNRLTS--------------------------LPA---LPSG 222 (622)
T ss_dssp TTCCEEECCSSCCSCCCCC---------CTTCCEEECCSSCCSS--------------------------CCC---CCTT
T ss_pred CCCcEEECCCCCCCCCCCc---------cchhhEEECcCCcccc--------------------------cCC---CCCC
Confidence 5555555555555443221 1345555555554442 221 1245
Q ss_pred CcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC
Q 045861 239 LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318 (508)
Q Consensus 239 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (508)
|++|++++|.+++ +| ..+++|++|++++|.++ .+|. .+++|+.|++++|.+. .+|..+..+++|+.|++++
T Consensus 223 L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~ 293 (622)
T 3g06_A 223 LKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEG 293 (622)
T ss_dssp CCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCS
T ss_pred CCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecC
Confidence 6666666665553 23 33455666666666665 2333 4456666666666665 4455566666666666666
Q ss_pred CcccccCCccc
Q 045861 319 NVLTYVIPSTF 329 (508)
Q Consensus 319 n~~~~~~~~~~ 329 (508)
|++.+..+..+
T Consensus 294 N~l~~~~~~~l 304 (622)
T 3g06_A 294 NPLSERTLQAL 304 (622)
T ss_dssp CCCCHHHHHHH
T ss_pred CCCCCcCHHHH
Confidence 66665544433
|
| >2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.92 E-value=7.7e-24 Score=196.10 Aligned_cols=207 Identities=24% Similarity=0.253 Sum_probs=170.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
..++++++++.++. +|..+. +++++|++++|.+.+..+..|..+++|++|++++|.+....+..+..+++|++|+++
T Consensus 17 ~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~ 93 (270)
T 2o6q_A 17 NKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVT 93 (270)
T ss_dssp TTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECC
T ss_pred CCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECC
Confidence 45677777777763 444333 568888888888876666678888888888888888876666667788888888888
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|.++...
T Consensus 94 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 173 (270)
T 2o6q_A 94 DNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRVP 173 (270)
T ss_dssp SSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCC
T ss_pred CCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEeC
Confidence 88888877777888889999999999998777777888999999999999998766667889999999999999999777
Q ss_pred cccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
+..|..+++|++|++++|++++..+..+..+++|+.|++++|++.+..+.
T Consensus 174 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 174 EGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred hhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 77788899999999999999987777888999999999999999865553
|
| >1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.4e-22 Score=189.12 Aligned_cols=206 Identities=24% Similarity=0.212 Sum_probs=166.5
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+..++++++++++++.++ .+|..+. +.++.|++++|.+.+..+..|..+++|++|++++|.+++..+. ..+++|+
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~~L~ 80 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLPVLG 80 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCTTCC
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCCcCC
Confidence 456677888888888877 3444443 6788888888888877777888888888888888888654332 6788899
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
+|++++|.+.. .+..+..+++|++|++++|++++..+..+..+++|++|++++|++++..+..|..+++|+.|++++|+
T Consensus 81 ~L~Ls~N~l~~-l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~ 159 (290)
T 1p9a_G 81 TLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNN 159 (290)
T ss_dssp EEECCSSCCSS-CCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred EEECCCCcCCc-CchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCc
Confidence 99999988874 45567788899999999999987777788889999999999999987777778889999999999999
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecC
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 445 (508)
++...+..|..+++|+.|++++|+++ .+|..+...++|+.+++++|++.+..
T Consensus 160 l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 160 LTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSG
T ss_pred CCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccCcC
Confidence 98666667788899999999999998 56667777788999999999987543
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.90 E-value=2.8e-23 Score=192.43 Aligned_cols=205 Identities=22% Similarity=0.239 Sum_probs=156.8
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
...+++|+.|+++++.+.. ...+..+++|++|++++|.+.+. ..+..+++|++|++++|.+.+..+..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~--~~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 112 (272)
T 3rfs_A 37 QNELNSIDQIIANNSDIKS--VQGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLK 112 (272)
T ss_dssp HHHHTTCCEEECTTSCCCC--CTTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCC
T ss_pred cccccceeeeeeCCCCccc--ccccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCC
Confidence 4567778888888877763 23467778888888888887742 3677788888888888887766666677788888
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
+|++++|.+....+..+..+++|++|++++|.+++..+..+..+++|++|++++|++++..+..+..+++|++|++++|.
T Consensus 113 ~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 192 (272)
T 3rfs_A 113 ELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQ 192 (272)
T ss_dssp EEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCc
Confidence 88888888887777777788888888888888876666667778888888888888886666667778888888888888
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
+++..+..+..+++|+.|++++|.+.+. +++|+++++..|.+++.+|..
T Consensus 193 l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 193 LKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp CSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 8876666777888888888888877642 556788888888888877774
|
| >3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A | Back alignment and structure |
|---|
Probab=99.89 E-value=2.3e-22 Score=186.29 Aligned_cols=201 Identities=21% Similarity=0.281 Sum_probs=164.3
Q ss_pred EEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCc
Q 045861 241 TMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNV 320 (508)
Q Consensus 241 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~ 320 (508)
.+++..+.+... .....+++|+.|++++|.+.. + ..+..+++|++|++++|.+.+. ..+..+++|++|++++|.
T Consensus 23 ~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~ 96 (272)
T 3rfs_A 23 KANLKKKSVTDA--VTQNELNSIDQIIANNSDIKS-V-QGIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQ 96 (272)
T ss_dssp HHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSC
T ss_pred HHHhcCcccccc--cccccccceeeeeeCCCCccc-c-cccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCc
Confidence 344444444422 335667889999999998873 2 3578899999999999988642 467888999999999999
Q ss_pred ccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCccc
Q 045861 321 LTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..
T Consensus 97 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 176 (272)
T 3rfs_A 97 LQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV 176 (272)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT
T ss_pred cCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH
Confidence 98888778888999999999999998777777888899999999999998777777888899999999999998777777
Q ss_pred ccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
+..+++|++|++++|++++..+..+..+++|++|++++|++.+.+|.
T Consensus 177 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 223 (272)
T 3rfs_A 177 FDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTCPG 223 (272)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTT
T ss_pred hcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccCcH
Confidence 78889999999999999988877888899999999999988866553
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-22 Score=180.85 Aligned_cols=195 Identities=15% Similarity=0.174 Sum_probs=84.9
Q ss_pred CCcEEccCCcCccccchhhhCCCCCcEEEeeCce-eeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCccCCcEEEc
Q 045861 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK-LFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLRDILVFNF 340 (508)
Q Consensus 263 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~~L~~L~L 340 (508)
+++|++++|.+++..+..|..+++|++|++++|. +....+..|..+++|++|++++ |.++...+..|..+++|++|++
T Consensus 33 l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L~l 112 (239)
T 2xwt_C 33 TQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112 (239)
T ss_dssp CCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEEEE
T ss_pred ccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEEeC
Confidence 3344444444333333333344444444444443 3333333344444444444444 4444443344444444444444
Q ss_pred cCCccccccCccccCCCCCc---EEECCCC-cCCCccchhhhcCCCCC-EEECcCCcccccCcccccCCCCCCEEECCCC
Q 045861 341 SSNSLNGSLPLDIGNLKVVV---GIDLSRN-NLSDSIPTVIGGLSNLA-FFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415 (508)
Q Consensus 341 ~~n~l~~~~~~~~~~l~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 415 (508)
++|.+++ +|. +..+++|+ +|++++| .+.+..+..|..+++|+ +|++++|.++...+..|.. ++|+.|++++|
T Consensus 113 ~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n 189 (239)
T 2xwt_C 113 FNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKN 189 (239)
T ss_dssp EEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTC
T ss_pred CCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCC
Confidence 4444442 222 33444444 4555554 44433333444455555 5555555554222222322 44555555555
Q ss_pred c-ccccCcccccCC-CCCCEEeCCCCcceecCCCccccCCCCcccccCC
Q 045861 416 S-FSGFIPRSFEKL-LYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462 (508)
Q Consensus 416 ~-~~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n 462 (508)
+ +++..+..|.++ ++|++|++++|+++ .+|.. .+.+++.+.+.++
T Consensus 190 ~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~-~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 190 KYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK-GLEHLKELIARNT 236 (239)
T ss_dssp TTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT-TCTTCSEEECTTC
T ss_pred CCcccCCHHHhhccccCCcEEECCCCccc-cCChh-HhccCceeeccCc
Confidence 2 544444445555 55555555555554 33333 3444555544443
|
| >2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* | Back alignment and structure |
|---|
Probab=99.88 E-value=2e-22 Score=183.05 Aligned_cols=198 Identities=17% Similarity=0.171 Sum_probs=172.5
Q ss_pred CCCcEEEcccCccccccCccccCCCCCCcEEccCCc-CccccchhhhCCCCCcEEEeeC-ceeeeeCCcccCCCCCCCEE
Q 045861 237 INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK-LEGSIPDSLCNLGRLVELQFYD-NKLFGSIPACIGKLSPLRNL 314 (508)
Q Consensus 237 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L 314 (508)
+++++|++++|.+++..+..+.++++|++|++++|. ++...+..|..+++|++|++++ |.+.+..+..|..+++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999997777789999999999999997 8866667899999999999998 89987777889999999999
Q ss_pred EcCCCcccccCCccccCccCCc---EEEccCC-ccccccCccccCCCCCc-EEECCCCcCCCccchhhhcCCCCCEEECc
Q 045861 315 LLHSNVLTYVIPSTFLSLRDIL---VFNFSSN-SLNGSLPLDIGNLKVVV-GIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389 (508)
Q Consensus 315 ~l~~n~~~~~~~~~~~~~~~L~---~L~L~~n-~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (508)
++++|.++... . +..+++|+ +|++++| .+++..+..+..+++|+ +|++++|++....+..|.. ++|++|+++
T Consensus 111 ~l~~n~l~~lp-~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~ 187 (239)
T 2xwt_C 111 GIFNTGLKMFP-D-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLN 187 (239)
T ss_dssp EEEEECCCSCC-C-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECT
T ss_pred eCCCCCCcccc-c-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcC
Confidence 99999998744 3 88888888 9999999 99977777899999999 9999999999544445555 899999999
Q ss_pred CCc-ccccCcccccCC-CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCc
Q 045861 390 YNK-LQGSIPESLGDL-RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 390 ~n~-l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|+ ++...+..|..+ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 188 ~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 188 KNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TCTTCCEECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCcccCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 995 987777889999 9999999999999965444 57789999999874
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.2e-22 Score=190.32 Aligned_cols=201 Identities=19% Similarity=0.128 Sum_probs=123.9
Q ss_pred CCCCcEEEcccCccccccCccc--cCCCCCCcEEccCCcCccccc----hhhhCCCCCcEEEeeCceeeeeCCcccCCCC
Q 045861 236 LINLITMSLGINKLTGSIPISL--GKLQKLQGLYLYKNKLEGSIP----DSLCNLGRLVELQFYDNKLFGSIPACIGKLS 309 (508)
Q Consensus 236 l~~L~~L~l~~~~~~~~~~~~l--~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~ 309 (508)
+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+++|++|++++|.+.+..+..+..++
T Consensus 90 ~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~ 169 (310)
T 4glp_A 90 YSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLKPGLKVLSIAQAHSPAFSCEQVRAFP 169 (310)
T ss_dssp HSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBCSCCCEEEEECCSSCCCCTTSCCCCT
T ss_pred cCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhccCCCEEEeeCCCcchhhHHHhccCC
Confidence 4557778888877776666666 777888888888887775433 2334677777777777777666666777777
Q ss_pred CCCEEEcCCCccccc---C-CccccCccCCcEEEccCCccccccCc----cccCCCCCcEEECCCCcCCCccchhhhcC-
Q 045861 310 PLRNLLLHSNVLTYV---I-PSTFLSLRDILVFNFSSNSLNGSLPL----DIGNLKVVVGIDLSRNNLSDSIPTVIGGL- 380 (508)
Q Consensus 310 ~L~~L~l~~n~~~~~---~-~~~~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~~~~~~l- 380 (508)
+|++|++++|.+.+. . ...+..+++|++|++++|.++. ++. .+..+++|++|++++|++.+..|..+..+
T Consensus 170 ~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~ 248 (310)
T 4glp_A 170 ALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCM 248 (310)
T ss_dssp TCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCC
T ss_pred CCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhcc
Confidence 777777777765431 1 1223455666666666666652 221 23455666666666666665545444433
Q ss_pred --CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 381 --SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 381 --~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|++|++++|+++ .+|..+. ++|++|++++|++++. |. +..+++|+.|++++|+++
T Consensus 249 ~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~ 307 (310)
T 4glp_A 249 WSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-PQ-PDELPEVDNLTLDGNPFL 307 (310)
T ss_dssp CCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-CC-TTSCCCCSCEECSSTTTS
T ss_pred CcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-ch-hhhCCCccEEECcCCCCC
Confidence 46666666666666 4444443 5666666666666643 22 455566666666666654
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=179.05 Aligned_cols=178 Identities=21% Similarity=0.217 Sum_probs=117.6
Q ss_pred CcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
++++++++.+. .+|..+. +++++|++++|.+.+..+..+..+++|++|++++|.+.+..+..|..+++|++|++++|
T Consensus 17 ~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 93 (251)
T 3m19_A 17 KEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANN 93 (251)
T ss_dssp TEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTS
T ss_pred eEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCCC
Confidence 34455555444 2332222 35556666666555555555666666666666666666665556666666677777777
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 423 (508)
.+++..+..+..+++|++|++++|++++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+.
T Consensus 94 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 173 (251)
T 3m19_A 94 QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHG 173 (251)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHH
Confidence 66655556666777777777777777755555667777777777777777755555677777788888888887776666
Q ss_pred cccCCCCCCEEeCCCCcceec
Q 045861 424 SFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 424 ~l~~l~~L~~L~l~~n~l~~~ 444 (508)
.+..+++|++|++++|++.+.
T Consensus 174 ~~~~l~~L~~L~l~~N~~~c~ 194 (251)
T 3m19_A 174 AFDRLGKLQTITLFGNQFDCS 194 (251)
T ss_dssp TTTTCTTCCEEECCSCCBCTT
T ss_pred HHhCCCCCCEEEeeCCceeCC
Confidence 777777888888888877644
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.88 E-value=4.3e-23 Score=197.80 Aligned_cols=251 Identities=21% Similarity=0.208 Sum_probs=135.2
Q ss_pred CCEEEccCccCccCCChhhhhc-ccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccc-cCccccCCCCCCcEE
Q 045861 190 LKVIDLTGNQLHGILPSSMGNL-STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS-IPISLGKLQKLQGLY 267 (508)
Q Consensus 190 L~~L~l~~~~~~~~~~~~~~~~-~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~l~~~~~L~~L~ 267 (508)
++.++++++.+. +..+... .+.++.+++.++.+.+..+. +..+++|++|++++|.+... .+..+..+++|++|+
T Consensus 49 ~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~ 124 (336)
T 2ast_B 49 WQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLS 124 (336)
T ss_dssp SSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEE
T ss_pred heeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEe
Confidence 555666655444 2223322 12566666666655544443 34566666666666665533 455556666666666
Q ss_pred ccCCcCccccchhhhCCCCCcEEEeeCc-eeee-eCCcccCCCCCCCEEEcCCC-ccccc-CCccccCcc-CCcEEEccC
Q 045861 268 LYKNKLEGSIPDSLCNLGRLVELQFYDN-KLFG-SIPACIGKLSPLRNLLLHSN-VLTYV-IPSTFLSLR-DILVFNFSS 342 (508)
Q Consensus 268 l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~-~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~-~L~~L~L~~ 342 (508)
+++|.+++..+..+..+++|++|++++| .+++ .++..+..+++|++|++++| .+++. .+..+..++ +|++|++++
T Consensus 125 L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~ 204 (336)
T 2ast_B 125 LEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSG 204 (336)
T ss_dssp CTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCS
T ss_pred CcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCC
Confidence 6666666555555666666666666666 3433 13444555666666666666 55543 233345555 666666666
Q ss_pred Cc--cc-cccCccccCCCCCcEEECCCCc-CCCccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCcc
Q 045861 343 NS--LN-GSLPLDIGNLKVVVGIDLSRNN-LSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 343 n~--l~-~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
|. ++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. ++......+..+++|+.|++++| +
T Consensus 205 ~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i 283 (336)
T 2ast_B 205 YRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-V 283 (336)
T ss_dssp CGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-S
T ss_pred CcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-c
Confidence 62 33 2334445556666666666666 454555555666666666666663 32222224555666666666666 3
Q ss_pred cccCcccccCC-CCCCEEeCCCCcceecCCCc
Q 045861 418 SGFIPRSFEKL-LYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 418 ~~~~~~~l~~l-~~L~~L~l~~n~l~~~~p~~ 448 (508)
.. +.+..+ ..++.|++++|++++..|..
T Consensus 284 ~~---~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 284 PD---GTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp CT---TCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred CH---HHHHHHHhhCcceEEecccCccccCCc
Confidence 32 122222 22444556666666555543
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.88 E-value=2.4e-23 Score=201.32 Aligned_cols=251 Identities=14% Similarity=0.135 Sum_probs=167.4
Q ss_pred EEccCccCccCCChhhhhcccccCeeEccCCcCcccCC----hhhhcCC-CCcEEEcccCccccccCccccCC-----CC
Q 045861 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP----EEIGNLI-NLITMSLGINKLTGSIPISLGKL-----QK 262 (508)
Q Consensus 193 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~----~~l~~l~-~L~~L~l~~~~~~~~~~~~l~~~-----~~ 262 (508)
+.++.+.+++..|..+. .+.+|++|++++|.+.+..+ ..+..++ +|++|++++|.+....+..+..+ ++
T Consensus 3 ~~ls~n~~~~~~~~~~~-~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTS-IPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EECCCCTTCCHHHHHHT-SCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred cccccccchHHHHHHHh-CCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 34555555554444333 23256666666666655544 5566666 77788888777776555555443 77
Q ss_pred CCcEEccCCcCccccchh----hhCC-CCCcEEEeeCceeeeeCCcc----cCC-CCCCCEEEcCCCcccccCCc----c
Q 045861 263 LQGLYLYKNKLEGSIPDS----LCNL-GRLVELQFYDNKLFGSIPAC----IGK-LSPLRNLLLHSNVLTYVIPS----T 328 (508)
Q Consensus 263 L~~L~l~~n~l~~~~~~~----~~~l-~~L~~L~L~~n~~~~~~~~~----~~~-~~~L~~L~l~~n~~~~~~~~----~ 328 (508)
|++|++++|.+++..+.. +..+ ++|++|++++|.+++..+.. +.. .++|++|++++|.+.+.... .
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 888888888877555543 3334 78888888888876544433 333 35888888888888754332 2
Q ss_pred ccCcc-CCcEEEccCCccccccCcc----ccCC-CCCcEEECCCCcCCCc----cchhhhc-CCCCCEEECcCCcccccC
Q 045861 329 FLSLR-DILVFNFSSNSLNGSLPLD----IGNL-KVVVGIDLSRNNLSDS----IPTVIGG-LSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 329 ~~~~~-~L~~L~L~~n~l~~~~~~~----~~~l-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~l~~~~ 397 (508)
+...+ +|++|++++|.+++..+.. +... ++|++|++++|.+.+. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 33444 8888888888887655443 3444 5899999999988863 3445555 458999999999988644
Q ss_pred c----ccccCCCCCCEEECCCCcccccC-------cccccCCCCCCEEeCCCCcceec
Q 045861 398 P----ESLGDLRSLEFLDLSNNSFSGFI-------PRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 398 ~----~~~~~l~~L~~L~L~~n~~~~~~-------~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
+ ..+..+++|++|++++|.+.+.. +..+..+++|+.|++++|++...
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 3 44567788999999999855433 33566788899999999998754
|
| >3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A | Back alignment and structure |
|---|
Probab=99.88 E-value=1.3e-21 Score=179.09 Aligned_cols=182 Identities=24% Similarity=0.283 Sum_probs=162.0
Q ss_pred CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
...++++++++.+. .+|..+. +.++.|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 90 (251)
T 3m19_A 14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGL 90 (251)
T ss_dssp GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEEC
Confidence 35788999998876 5555444 68999999999999998889999999999999999999888888999999999999
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceec
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
++|.+.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++++.
T Consensus 91 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 170 (251)
T 3m19_A 91 ANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSV 170 (251)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred CCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCcc
Confidence 99999987778899999999999999999977777789999999999999999988888899999999999999999955
Q ss_pred CCCc-cccCCCCcccccCCCCCCC-CC
Q 045861 445 IPSG-ESFANFSDNSFMGNSFLCG-SP 469 (508)
Q Consensus 445 ~p~~-~~~~~l~~l~l~~n~~~c~-~~ 469 (508)
.+.. ..+.+|+.+++++|+|.|+ |.
T Consensus 171 ~~~~~~~l~~L~~L~l~~N~~~c~~~~ 197 (251)
T 3m19_A 171 PHGAFDRLGKLQTITLFGNQFDCSRCE 197 (251)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCTTSTT
T ss_pred CHHHHhCCCCCCEEEeeCCceeCCccc
Confidence 5433 4678899999999999999 54
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=1.7e-23 Score=204.50 Aligned_cols=188 Identities=23% Similarity=0.227 Sum_probs=118.9
Q ss_pred cCCCCCCcEEccCCcCcc----ccchhhhCCCCCcEEEeeCceeeeeCCcc----cCCC---------CCCCEEEcCCCc
Q 045861 258 GKLQKLQGLYLYKNKLEG----SIPDSLCNLGRLVELQFYDNKLFGSIPAC----IGKL---------SPLRNLLLHSNV 320 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~----~~~~---------~~L~~L~l~~n~ 320 (508)
..+++|++|++++|.+.+ .++..+..+++|++|++++|.++...+.. +..+ ++|++|++++|.
T Consensus 91 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~ 170 (386)
T 2ca6_A 91 LKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNR 170 (386)
T ss_dssp TTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSC
T ss_pred hhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCC
Confidence 456666666666666654 24445566666666666666654322222 2222 677777777777
Q ss_pred cccc-CC---ccccCccCCcEEEccCCcccc-----ccCccccCCCCCcEEECCCCcCC----CccchhhhcCCCCCEEE
Q 045861 321 LTYV-IP---STFLSLRDILVFNFSSNSLNG-----SLPLDIGNLKVVVGIDLSRNNLS----DSIPTVIGGLSNLAFFS 387 (508)
Q Consensus 321 ~~~~-~~---~~~~~~~~L~~L~L~~n~l~~-----~~~~~~~~l~~L~~L~l~~n~l~----~~~~~~~~~l~~L~~L~ 387 (508)
+... .+ ..+..+++|++|++++|.++. ..+..+..+++|+.|++++|.++ ..++..+..+++|++|+
T Consensus 171 l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~ 250 (386)
T 2ca6_A 171 LENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELG 250 (386)
T ss_dssp CTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEE
T ss_pred CCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEE
Confidence 6522 22 234556677777777777652 23335667777777777777775 34566677777888888
Q ss_pred CcCCccccc----Ccccc--cCCCCCCEEECCCCcccc----cCcccc-cCCCCCCEEeCCCCcceecC
Q 045861 388 LAYNKLQGS----IPESL--GDLRSLEFLDLSNNSFSG----FIPRSF-EKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 388 L~~n~l~~~----~~~~~--~~l~~L~~L~L~~n~~~~----~~~~~l-~~l~~L~~L~l~~n~l~~~~ 445 (508)
+++|.+++. ++..+ +.+++|+.|+|++|.+++ .++..+ .++++|++|++++|++++..
T Consensus 251 L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~ 319 (386)
T 2ca6_A 251 LNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEED 319 (386)
T ss_dssp CTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTS
T ss_pred CCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcch
Confidence 888877654 34455 237778888888888776 355555 55778888888888877443
|
| >4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-22 Score=187.87 Aligned_cols=223 Identities=17% Similarity=0.207 Sum_probs=180.3
Q ss_pred CCcEEEcccCccccccC---ccccCCCCCCcEEccCCcCccccchhh--hCCCCCcEEEeeCceeeeeCC----cccCCC
Q 045861 238 NLITMSLGINKLTGSIP---ISLGKLQKLQGLYLYKNKLEGSIPDSL--CNLGRLVELQFYDNKLFGSIP----ACIGKL 308 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~----~~~~~~ 308 (508)
.++.+.+.++.+..... ..+..+++|++|++++|.+.+..+..+ ..+++|++|++++|.+.+..+ ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 46666776666542111 112234679999999999998888877 889999999999999876443 334578
Q ss_pred CCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccc--c--CccccCCCCCcEEECCCCcCCCccch----hhhcC
Q 045861 309 SPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGS--L--PLDIGNLKVVVGIDLSRNNLSDSIPT----VIGGL 380 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~--~--~~~~~~l~~L~~L~l~~n~l~~~~~~----~~~~l 380 (508)
++|++|++++|.+....+..+..+++|++|++++|++.+. . +..+..+++|++|++++|+++. .+. .+..+
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~~l 223 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAAAG 223 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHHHT
T ss_pred cCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHhcC
Confidence 9999999999999988889999999999999999997642 2 2334788999999999999973 333 35788
Q ss_pred CCCCEEECcCCcccccCcccccCC---CCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcc
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDL---RSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDN 457 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l 457 (508)
++|++|++++|.+++..|..+..+ ++|++|++++|+++ .+|..+. ++|++|++++|+++ .+|....+++|+.+
T Consensus 224 ~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~-~~~~~~~l~~L~~L 299 (310)
T 4glp_A 224 VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLN-RAPQPDELPEVDNL 299 (310)
T ss_dssp CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCC-SCCCTTSCCCCSCE
T ss_pred CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCC-CCchhhhCCCccEE
Confidence 999999999999998777777766 69999999999999 5566653 79999999999998 55666678999999
Q ss_pred cccCCCCC
Q 045861 458 SFMGNSFL 465 (508)
Q Consensus 458 ~l~~n~~~ 465 (508)
++++|++.
T Consensus 300 ~L~~N~l~ 307 (310)
T 4glp_A 300 TLDGNPFL 307 (310)
T ss_dssp ECSSTTTS
T ss_pred ECcCCCCC
Confidence 99999864
|
| >2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A | Back alignment and structure |
|---|
Probab=99.87 E-value=2.2e-23 Score=203.64 Aligned_cols=190 Identities=19% Similarity=0.227 Sum_probs=124.2
Q ss_pred hhcCCCCcEEEcccCcccc----ccCccccCCCCCCcEEccCCcCccccchhh----hCC---------CCCcEEEeeCc
Q 045861 233 IGNLINLITMSLGINKLTG----SIPISLGKLQKLQGLYLYKNKLEGSIPDSL----CNL---------GRLVELQFYDN 295 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~----~~l---------~~L~~L~L~~n 295 (508)
+..+++|++|++++|.+.. .++..+..+++|++|++++|.+++..+..+ ..+ ++|++|++++|
T Consensus 90 l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n 169 (386)
T 2ca6_A 90 LLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRN 169 (386)
T ss_dssp HTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSS
T ss_pred HhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCC
Confidence 3445555555555555553 234445555666666666665543222222 222 66666666666
Q ss_pred eee-eeCC---cccCCCCCCCEEEcCCCcccc-----cCCccccCccCCcEEEccCCccc----cccCccccCCCCCcEE
Q 045861 296 KLF-GSIP---ACIGKLSPLRNLLLHSNVLTY-----VIPSTFLSLRDILVFNFSSNSLN----GSLPLDIGNLKVVVGI 362 (508)
Q Consensus 296 ~~~-~~~~---~~~~~~~~L~~L~l~~n~~~~-----~~~~~~~~~~~L~~L~L~~n~l~----~~~~~~~~~l~~L~~L 362 (508)
.++ ...+ ..+..+++|++|++++|.+.. ..+..+..+++|++|+|++|.++ ..++..+..+++|+.|
T Consensus 170 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L 249 (386)
T 2ca6_A 170 RLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLREL 249 (386)
T ss_dssp CCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEE
T ss_pred CCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEE
Confidence 654 2222 244556677777777776652 22335667778888888888875 4567777888889999
Q ss_pred ECCCCcCCCc----cchhhhc--CCCCCEEECcCCcccc----cCcccc-cCCCCCCEEECCCCcccccCc
Q 045861 363 DLSRNNLSDS----IPTVIGG--LSNLAFFSLAYNKLQG----SIPESL-GDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 363 ~l~~n~l~~~----~~~~~~~--l~~L~~L~L~~n~l~~----~~~~~~-~~l~~L~~L~L~~n~~~~~~~ 422 (508)
++++|.+++. ++..+.. +++|++|++++|.+++ .++..+ .++++|+.|++++|.+++..+
T Consensus 250 ~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 250 GLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp ECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred ECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 9999988865 4555543 8899999999999986 366666 557899999999999987653
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.6e-21 Score=182.37 Aligned_cols=193 Identities=25% Similarity=0.330 Sum_probs=121.6
Q ss_pred hcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCE
Q 045861 234 GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313 (508)
Q Consensus 234 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 313 (508)
..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+. ..+..+++|++
T Consensus 38 ~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~~ 111 (308)
T 1h6u_A 38 ADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIKT 111 (308)
T ss_dssp HHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCCE
T ss_pred HHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCCE
Confidence 345566666666666553 22 45556666666666666653322 66666666666666665432 24566666777
Q ss_pred EEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcc
Q 045861 314 LLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL 393 (508)
Q Consensus 314 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 393 (508)
|++++|.+.+.. .+..+++|++|++++|.+++..+ +..+++|+.|++++|.+.+..+ +..+++|+.|++++|.+
T Consensus 112 L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l 185 (308)
T 1h6u_A 112 LDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKI 185 (308)
T ss_dssp EECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCcc
Confidence 777776666542 26666777777777777664333 5666777777777777764333 66677777777777777
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 394 QGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++..+ +..+++|+.|++++|++++.. .+..+++|+.|++++|+++
T Consensus 186 ~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 186 SDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp CCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEE
T ss_pred CcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeee
Confidence 64322 666777777777777777544 2667777777777777775
|
| >3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.8e-23 Score=199.21 Aligned_cols=251 Identities=16% Similarity=0.117 Sum_probs=195.7
Q ss_pred eeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC----ccccCCC-CCCcEEccCCcCccccchhhhCC-----CC
Q 045861 217 YIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP----ISLGKLQ-KLQGLYLYKNKLEGSIPDSLCNL-----GR 286 (508)
Q Consensus 217 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~----~~l~~~~-~L~~L~l~~n~l~~~~~~~~~~l-----~~ 286 (508)
+++++++.+.+.+|..+....+|++|++++|.+....+ ..+..++ +|++|++++|.+++..+..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 46788888888888877777789999999999987665 6788888 89999999999997777777664 99
Q ss_pred CcEEEeeCceeeeeCCcc----cCCC-CCCCEEEcCCCcccccCCccc----cC-ccCCcEEEccCCccccc----cCcc
Q 045861 287 LVELQFYDNKLFGSIPAC----IGKL-SPLRNLLLHSNVLTYVIPSTF----LS-LRDILVFNFSSNSLNGS----LPLD 352 (508)
Q Consensus 287 L~~L~L~~n~~~~~~~~~----~~~~-~~L~~L~l~~n~~~~~~~~~~----~~-~~~L~~L~L~~n~l~~~----~~~~ 352 (508)
|++|++++|.+++..+.. +..+ ++|++|++++|.+.......+ .. .++|++|++++|.++.. ++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987655543 4444 899999999999987765443 33 46999999999999853 3334
Q ss_pred ccCCC-CCcEEECCCCcCCCccchhh----hcC-CCCCEEECcCCccccc----CcccccC-CCCCCEEECCCCcccccC
Q 045861 353 IGNLK-VVVGIDLSRNNLSDSIPTVI----GGL-SNLAFFSLAYNKLQGS----IPESLGD-LRSLEFLDLSNNSFSGFI 421 (508)
Q Consensus 353 ~~~l~-~L~~L~l~~n~l~~~~~~~~----~~l-~~L~~L~L~~n~l~~~----~~~~~~~-l~~L~~L~L~~n~~~~~~ 421 (508)
+...+ +|++|++++|++++..+..+ ..+ ++|++|++++|.+++. ++..+.. .++|++|++++|.+++..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 45555 99999999999987776544 445 5999999999999863 3445554 459999999999999765
Q ss_pred c----ccccCCCCCCEEeCCCCcceecCC--------CccccCCCCcccccCCCCCCC
Q 045861 422 P----RSFEKLLYLEYLNLSFNRLKGEIP--------SGESFANFSDNSFMGNSFLCG 467 (508)
Q Consensus 422 ~----~~l~~l~~L~~L~l~~n~l~~~~p--------~~~~~~~l~~l~l~~n~~~c~ 467 (508)
+ ..+..+++|+.|++++|.+....+ .......++.+++++|+....
T Consensus 242 ~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 242 LENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCc
Confidence 5 345677999999999999542111 123456678899999986554
|
| >2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A | Back alignment and structure |
|---|
Probab=99.86 E-value=8.4e-22 Score=188.78 Aligned_cols=242 Identities=17% Similarity=0.169 Sum_probs=198.7
Q ss_pred ccCeeEccCCcCcccCChhhhcC--CCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccc-cchhhhCCCCCcEE
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNL--INLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGS-IPDSLCNLGRLVEL 290 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L 290 (508)
.++.++++++.+. +..+..+ ++++.++++++.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 5889999988765 4556666 8999999999999876554 56799999999999998765 77788999999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCC-ccccc-CCccccCccCCcEEEccCC-ccccc-cCccccCCC-CCcEEECC
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSN-VLTYV-IPSTFLSLRDILVFNFSSN-SLNGS-LPLDIGNLK-VVVGIDLS 365 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~~~~~~~L~~L~L~~n-~l~~~-~~~~~~~l~-~L~~L~l~ 365 (508)
++++|.+++..+..+..+++|++|++++| .+++. .+..+..+++|++|++++| .+++. ++..+..++ +|++|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 99999988777888889999999999999 57653 4555778999999999999 88754 566788899 99999999
Q ss_pred CC--cCC-CccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCc-ccccCcccccCCCCCCEEeCCCCc
Q 045861 366 RN--NLS-DSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNS-FSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 366 ~n--~l~-~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~-~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+| .++ +.++..+..+++|++|++++|. +++..+..+..+++|++|++++|. +.......+..+++|+.|++++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 99 565 4567778899999999999999 777778889999999999999995 43333346888999999999999
Q ss_pred ceecCCCc--ccc-CCCCcccccCCCC
Q 045861 441 LKGEIPSG--ESF-ANFSDNSFMGNSF 464 (508)
Q Consensus 441 l~~~~p~~--~~~-~~l~~l~l~~n~~ 464 (508)
++.. ..+ ..+..+++++|..
T Consensus 283 ----i~~~~~~~l~~~l~~L~l~~n~l 305 (336)
T 2ast_B 283 ----VPDGTLQLLKEALPHLQINCSHF 305 (336)
T ss_dssp ----SCTTCHHHHHHHSTTSEESCCCS
T ss_pred ----cCHHHHHHHHhhCcceEEecccC
Confidence 3443 223 3477788877754
|
| >1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 | Back alignment and structure |
|---|
Probab=99.85 E-value=6.3e-21 Score=179.79 Aligned_cols=195 Identities=21% Similarity=0.329 Sum_probs=168.3
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDIL 336 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~ 336 (508)
...+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+... ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~ 110 (308)
T 1h6u_A 37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV--SAIAGLQSIK 110 (308)
T ss_dssp HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence 4567899999999999984 44 68899999999999999875444 89999999999999999875 3688999999
Q ss_pred EEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
+|++++|.+++. + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+++. +. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~-~-~l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~ 184 (308)
T 1h6u_A 111 TLDLTSTQITDV-T-PLAGLSNLQVLYLDLNQITNISP--LAGLTNLQYLSIGNAQVSDL-TP-LANLSKLTTLKADDNK 184 (308)
T ss_dssp EEECTTSCCCCC-G-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSC
T ss_pred EEECCCCCCCCc-h-hhcCCCCCCEEECCCCccCcCcc--ccCCCCccEEEccCCcCCCC-hh-hcCCCCCCEEECCCCc
Confidence 999999999854 3 38899999999999999996544 88999999999999999854 33 8899999999999999
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c 466 (508)
+++..+ +..+++|++|++++|++.+ ++....+++|+.+++++|++.+
T Consensus 185 l~~~~~--l~~l~~L~~L~L~~N~l~~-~~~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 ISDISP--LASLPNLIEVHLKNNQISD-VSPLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp CCCCGG--GGGCTTCCEEECTTSCCCB-CGGGTTCTTCCEEEEEEEEEEC
T ss_pred cCcChh--hcCCCCCCEEEccCCccCc-cccccCCCCCCEEEccCCeeec
Confidence 996544 8899999999999999984 5556678899999999998754
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.84 E-value=1.4e-20 Score=180.87 Aligned_cols=198 Identities=15% Similarity=0.108 Sum_probs=87.7
Q ss_pred EEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccC-ccccCCCCCCc-EEcc
Q 045861 192 VIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIP-ISLGKLQKLQG-LYLY 269 (508)
Q Consensus 192 ~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~-L~l~ 269 (508)
+++.+++.++ .+|..+ ++++++|++++|.+....+..|.++++|++|++++|.+.+.++ .+|.+++++.+ +.+.
T Consensus 13 ~v~C~~~~Lt-~iP~~l---~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~ 88 (350)
T 4ay9_X 13 VFLCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK 88 (350)
T ss_dssp EEEEESTTCC-SCCTTC---CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEE
T ss_pred EEEecCCCCC-ccCcCc---CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhccc
Confidence 4555555555 233322 2355555555555554444445555555555555555433222 23444444443 2333
Q ss_pred CCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC-CcccccCCccccCcc-CCcEEEccCCcccc
Q 045861 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS-NVLTYVIPSTFLSLR-DILVFNFSSNSLNG 347 (508)
Q Consensus 270 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~~~~~~-~L~~L~L~~n~l~~ 347 (508)
.|.+....+..|..+++|++|++++|.+....+..+....++..+++.+ +.+.......|..+. .+++|++++|+++.
T Consensus 89 ~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~~ 168 (350)
T 4ay9_X 89 ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE 168 (350)
T ss_dssp ETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCE
T ss_pred CCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccccccC
Confidence 3444444444455555555555555554433333333444444444433 334433333343332 34445555555542
Q ss_pred ccCccccCCCCCcEEECCC-CcCCCccchhhhcCCCCCEEECcCCccc
Q 045861 348 SLPLDIGNLKVVVGIDLSR-NNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394 (508)
Q Consensus 348 ~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 394 (508)
. +.......+|+++++.+ |.++...+++|.++++|++|++++|+++
T Consensus 169 i-~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~ 215 (350)
T 4ay9_X 169 I-HNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH 215 (350)
T ss_dssp E-CTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCC
T ss_pred C-ChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcC
Confidence 2 22222233444444442 3333222233444445555555555444
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.82 E-value=6.2e-20 Score=163.91 Aligned_cols=152 Identities=19% Similarity=0.316 Sum_probs=84.2
Q ss_pred cEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCC
Q 045861 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367 (508)
Q Consensus 288 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 367 (508)
+.++++++.++ .+|..+. ++++.|++++|.+....+..|..+++|++|+|++|++++..+..+..+++|++|++++|
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 45555555543 2333222 45666666666666555555555566666666666665555555555555555555555
Q ss_pred cCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 368 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+++...+..|.++++|++|++++|.+++..+..|..+++|+.|+|++|++++..+..|..+++|++|++++|++.
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEE
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcC
Confidence 555444444555555555555555555554555555555555555555555555455555555555555555554
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.82 E-value=7.6e-20 Score=162.20 Aligned_cols=174 Identities=21% Similarity=0.224 Sum_probs=91.6
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCcc
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNL 81 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 81 (508)
++++++++ .+|..+ .++|++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|++++|++
T Consensus 13 ~c~~~~l~-~~p~~~---~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 13 ECYSQGRT-SVPTGI---PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp ECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EecCCCcc-CCCCCC---CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 34455555 445433 34555666666555544444455555566666665555544444455555555555555555
Q ss_pred ccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCC
Q 045861 82 IGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNL 161 (508)
Q Consensus 82 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L 161 (508)
.+..+..|.++++|++|++++|.+. +..+..+..+++|++|++++|.+++..+..|..+++|
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~------------------~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L 150 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQ------------------SLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL 150 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCC------------------CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred CccCHhHhcCccCCCEEEcCCCcCc------------------ccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence 5443444555555555555555443 1223334555666666666666654444445556666
Q ss_pred CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhh
Q 045861 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209 (508)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~ 209 (508)
++|++++|.+.+ .++.|+.|+++.+.+++.+|..++
T Consensus 151 ~~L~l~~N~~~~------------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 151 QYIWLHDNPWDC------------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp CEEECCSCCBCC------------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred cEEEecCCCeec------------CCCCHHHHHHHHHhCCceeeccCc
Confidence 666666654432 234455555555555555554443
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.8e-20 Score=177.92 Aligned_cols=176 Identities=23% Similarity=0.256 Sum_probs=95.5
Q ss_pred CcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccC-CCCCCCEEEcCCCcccccCCccccCccCCcEEEccC
Q 045861 264 QGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIG-KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342 (508)
Q Consensus 264 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~-~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 342 (508)
+.++++++.+. .+|..+. +.++.|++++|.+++..+..+. .+++|+.|++++|.+....+..|..+++|++|+|++
T Consensus 21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 45666666665 3343322 2456666666666655555554 566666666666666655555566666666666666
Q ss_pred CccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccc---cCCCCCCEEECCCCcccc
Q 045861 343 NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL---GDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 343 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~L~~n~~~~ 419 (508)
|+++...+..+..+++|+.|++++|++.+..+..|..+++|+.|+|++|.++...+..| ..+++|+.|+|++|++++
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 66654444455555555555555555554445555555555555555555553322333 335555555555555554
Q ss_pred cCcccccCCCC--CCEEeCCCCcce
Q 045861 420 FIPRSFEKLLY--LEYLNLSFNRLK 442 (508)
Q Consensus 420 ~~~~~l~~l~~--L~~L~l~~n~l~ 442 (508)
..+..+..++. ++.|++++|++.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444444 244555555554
|
| >2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.9e-20 Score=162.87 Aligned_cols=156 Identities=22% Similarity=0.252 Sum_probs=104.7
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 391 (508)
+.++++++.++.+... + .+++++|++++|.+++..+..+..+++|+.|++++|++.+..+..|.++++|++|+|++|
T Consensus 14 ~~v~c~~~~l~~iP~~-l--~~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N 90 (220)
T 2v9t_B 14 NIVDCRGKGLTEIPTN-L--PETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGN 90 (220)
T ss_dssp TEEECTTSCCSSCCSS-C--CTTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSS
T ss_pred CEEEcCCCCcCcCCCc-c--CcCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCC
Confidence 4566666666644332 1 256777777777777656666777777777777777777666667777777777777777
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.++...+..|..+++|++|+|++|++++..+..|..+++|++|++++|++++..+.. ..+.+++.+++++|||.|+|++
T Consensus 91 ~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~l 170 (220)
T 2v9t_B 91 KITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCHL 170 (220)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGGG
T ss_pred cCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCcc
Confidence 777554555667777777777777777666677777777777777777776443332 3456677777777777777764
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=9.3e-20 Score=162.76 Aligned_cols=157 Identities=25% Similarity=0.269 Sum_probs=111.5
Q ss_pred cEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCC-ccccCccCCcEEEccCCccccccCccccCCCCCcEEECCC
Q 045861 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIP-STFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSR 366 (508)
Q Consensus 288 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (508)
+.+++++|.++ .+|..+ .+.+++|++++|.+....+ ..|..+++|++|++++|.+++..+..+..+++|++|++++
T Consensus 14 ~~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 35555555554 233322 2345667777776666533 4466777777777777777766666777777788888888
Q ss_pred CcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 367 NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 367 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++.+..+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 88877667777778888888888888887777778888888888888888887777788888888888888888775544
Q ss_pred C
Q 045861 447 S 447 (508)
Q Consensus 447 ~ 447 (508)
.
T Consensus 171 l 171 (220)
T 2v70_A 171 L 171 (220)
T ss_dssp G
T ss_pred h
Confidence 3
|
| >2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=1.9e-19 Score=160.77 Aligned_cols=157 Identities=18% Similarity=0.190 Sum_probs=138.6
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccC-ccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP-LDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
+.+++++|.++.+.. .+ ...+++|++++|.+++..+ ..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 14 ~~l~~s~n~l~~iP~-~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 90 (220)
T 2v70_A 14 TTVDCSNQKLNKIPE-HI--PQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTS 90 (220)
T ss_dssp TEEECCSSCCSSCCS-CC--CTTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEeEeCCCCcccCcc-CC--CCCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCC
Confidence 589999999986543 22 3467899999999997644 4588999999999999999987777899999999999999
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCC
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|.+++..+..|..+++|++|++++|++++..|..|..+++|++|++++|++++..|.. ..+.+|+.+++++|||.|+|+
T Consensus 91 N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~ 170 (220)
T 2v70_A 91 NRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCNCY 170 (220)
T ss_dssp SCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECSGG
T ss_pred CccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCCCc
Confidence 9999888888999999999999999999988999999999999999999999766654 457889999999999999998
Q ss_pred CC
Q 045861 470 NL 471 (508)
Q Consensus 470 ~~ 471 (508)
..
T Consensus 171 l~ 172 (220)
T 2v70_A 171 LA 172 (220)
T ss_dssp GH
T ss_pred hH
Confidence 53
|
| >2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.81 E-value=2.5e-19 Score=158.90 Aligned_cols=156 Identities=22% Similarity=0.247 Sum_probs=95.4
Q ss_pred CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 286 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
++++|++++|.+.+..+..+..+++|++|++++|.+....+..|..+++|++|++++|.+++..+..+..+++|++|+++
T Consensus 29 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~ 108 (208)
T 2o6s_A 29 QTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALN 108 (208)
T ss_dssp TCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcC
Confidence 45555555555544344444555555555555555555544455556666666666666664444455666666666666
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecC
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEI 445 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~ 445 (508)
+|.+.+..+..|..+++|++|++++|.+++..+..+..+++|++|++++|.+.+ .+++|++|+++.|.+++.+
T Consensus 109 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~i 181 (208)
T 2o6s_A 109 TNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVV 181 (208)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTB
T ss_pred CCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCcee
Confidence 666665555556667777777777777765555556667777777777776553 2456777777777777777
Q ss_pred CCc
Q 045861 446 PSG 448 (508)
Q Consensus 446 p~~ 448 (508)
|..
T Consensus 182 p~~ 184 (208)
T 2o6s_A 182 RNS 184 (208)
T ss_dssp BCT
T ss_pred ecc
Confidence 654
|
| >4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* | Back alignment and structure |
|---|
Probab=99.81 E-value=7.2e-19 Score=168.97 Aligned_cols=241 Identities=21% Similarity=0.114 Sum_probs=158.8
Q ss_pred CEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCC-hhhhcCCCCc
Q 045861 162 QWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP-EEIGNLINLI 240 (508)
Q Consensus 162 ~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~-~~l~~l~~L~ 240 (508)
++++.+++.++.+|.+++ +++++|++++|.++...+..|..++ +|++|++++|.+.+.++ ..|.+++++.
T Consensus 12 ~~v~C~~~~Lt~iP~~l~--------~~l~~L~Ls~N~i~~i~~~~f~~l~-~L~~L~Ls~N~i~~~i~~~~f~~L~~l~ 82 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDLP--------RNAIELRFVLTKLRVIQKGAFSGFG-DLEKIEISQNDVLEVIEADVFSNLPKLH 82 (350)
T ss_dssp TEEEEESTTCCSCCTTCC--------TTCSEEEEESCCCSEECTTSSTTCT-TCCEEEEECCTTCCEECTTSBCSCTTCC
T ss_pred CEEEecCCCCCccCcCcC--------CCCCEEEccCCcCCCcCHHHHcCCC-CCCEEECcCCCCCCccChhHhhcchhhh
Confidence 566777777776665432 4677888888877766556666665 78888888887765444 4566777766
Q ss_pred E-EEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCc-eeeeeCCcccCCCC-CCCEEEcC
Q 045861 241 T-MSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN-KLFGSIPACIGKLS-PLRNLLLH 317 (508)
Q Consensus 241 ~-L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~~~~~~-~L~~L~l~ 317 (508)
. +.+..|.+....+..+..+++|++|++++|.+....+..+....++..+++.++ .+....+..|..++ .++.|+++
T Consensus 83 ~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~ 162 (350)
T 4ay9_X 83 EIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLN 162 (350)
T ss_dssp EEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECC
T ss_pred hhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccc
Confidence 4 445567777666777777888888888888777655556666667777777653 55545555555553 57778888
Q ss_pred CCcccccCCccccCccCCcEEEccC-CccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccccc
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSS-NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 396 (508)
+|.++.+.+..|. ..+|+++++.+ |.++...+..|..+++|++|++++|+++...+. .+.+|+.|.+.++.-...
T Consensus 163 ~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~---~~~~L~~L~~l~~~~l~~ 238 (350)
T 4ay9_X 163 KNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY---GLENLKKLRARSTYNLKK 238 (350)
T ss_dssp SSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS---SCTTCCEEECTTCTTCCC
T ss_pred cccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh---hhccchHhhhccCCCcCc
Confidence 8887766555553 45677777764 556644445677778888888888887743332 345666666655543335
Q ss_pred CcccccCCCCCCEEECCCCc
Q 045861 397 IPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 397 ~~~~~~~l~~L~~L~L~~n~ 416 (508)
+|. +..+++|+.++++++.
T Consensus 239 lP~-l~~l~~L~~l~l~~~~ 257 (350)
T 4ay9_X 239 LPT-LEKLVALMEASLTYPS 257 (350)
T ss_dssp CCC-TTTCCSCCEEECSCHH
T ss_pred CCC-chhCcChhhCcCCCCc
Confidence 553 6677778888877654
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-18 Score=156.70 Aligned_cols=156 Identities=25% Similarity=0.270 Sum_probs=100.2
Q ss_pred CcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCC
Q 045861 287 LVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSR 366 (508)
Q Consensus 287 L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~ 366 (508)
-+.++.+++.+. .+|..+ .++|++|++++|.+....+..|..+++|++|+|++|.++...+..+..+++|+.|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 355666666554 333322 26677777777777766666666677777777777777655555566666777777777
Q ss_pred CcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 367 NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 367 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|++++..+..|..+++|++|++++|.++ .+|..+..+++|+.|++++|++++..+..+..+++|+.|++++|++.+..+
T Consensus 98 N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 98 NQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7766555555666667777777777666 556666666667777777776665555566666666666666666664443
|
| >3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.79 E-value=1.8e-18 Score=155.54 Aligned_cols=152 Identities=24% Similarity=0.249 Sum_probs=77.6
Q ss_pred CcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCcc
Q 045861 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLEN 102 (508)
Q Consensus 23 L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 102 (508)
-+.++.+++.+. .+|..+ .++|++|++++|++++..|..|.++++|++|++++|++....+..|..+++|++|++++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~ 97 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGT 97 (229)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEeEccCCCcC-ccCCCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCC
Confidence 345555555555 344333 25566666666666655555566666666666666665544344455566666655555
Q ss_pred ccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccc
Q 045861 103 NNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLS 182 (508)
Q Consensus 103 n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~ 182 (508)
|.++. ..+..+..+++|++|++++|+++ .+|..+..+++|+.|++++|.+..++. .
T Consensus 98 N~l~~------------------l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~-----~ 153 (229)
T 3e6j_A 98 NQLTV------------------LPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPH-----G 153 (229)
T ss_dssp SCCCC------------------CCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCT-----T
T ss_pred CcCCc------------------cChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCH-----H
Confidence 55542 11223344455555555555554 344444455555555555555444332 2
Q ss_pred cccCCCCCCEEEccCccCc
Q 045861 183 SLRNCRNLKVIDLTGNQLH 201 (508)
Q Consensus 183 ~l~~~~~L~~L~l~~~~~~ 201 (508)
.+..+++|+.|++++|.+.
T Consensus 154 ~~~~l~~L~~L~l~~N~~~ 172 (229)
T 3e6j_A 154 AFDRLSSLTHAYLFGNPWD 172 (229)
T ss_dssp TTTTCTTCCEEECTTSCBC
T ss_pred HHhCCCCCCEEEeeCCCcc
Confidence 2444455555555555444
|
| >2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.78 E-value=9.9e-19 Score=168.71 Aligned_cols=176 Identities=24% Similarity=0.169 Sum_probs=111.5
Q ss_pred cEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhh-CCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCC
Q 045861 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC-NLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHS 318 (508)
Q Consensus 240 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~ 318 (508)
+.++++++.+.. +|..+. +.++.|++++|.+++..+..|. .+++|++|++++|.+.+..+..|..+++|++|++++
T Consensus 21 ~~l~c~~~~l~~-iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~ 97 (361)
T 2xot_A 21 NILSCSKQQLPN-VPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSS 97 (361)
T ss_dssp TEEECCSSCCSS-CCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CEEEeCCCCcCc-cCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCC
Confidence 456666666653 443332 3466677777776655555555 667777777777776666666666677777777777
Q ss_pred CcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhh---hcCCCCCEEECcCCcccc
Q 045861 319 NVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVI---GGLSNLAFFSLAYNKLQG 395 (508)
Q Consensus 319 n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~L~~n~l~~ 395 (508)
|.+....+..|..+++|++|+|++|.++...+..+..+++|+.|++++|.+.+..+..| ..+++|+.|+|++|.++.
T Consensus 98 N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 177 (361)
T 2xot_A 98 NHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKK 177 (361)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCC
T ss_pred CcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCc
Confidence 77766666666667777777777777766666666667777777777777765444444 456677777777777764
Q ss_pred cCcccccCCCC--CCEEECCCCccc
Q 045861 396 SIPESLGDLRS--LEFLDLSNNSFS 418 (508)
Q Consensus 396 ~~~~~~~~l~~--L~~L~L~~n~~~ 418 (508)
..+..+..++. ++.|++++|.+.
T Consensus 178 l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 178 LPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp CCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred cCHHHhhhccHhhcceEEecCCCcc
Confidence 44455555554 366777777665
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.78 E-value=1.5e-18 Score=161.92 Aligned_cols=171 Identities=25% Similarity=0.325 Sum_probs=88.9
Q ss_pred hcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCE
Q 045861 234 GNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRN 313 (508)
Q Consensus 234 ~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~ 313 (508)
..+++|+.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+
T Consensus 43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l---------------- 102 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKV---------------- 102 (291)
T ss_dssp HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC----------------
T ss_pred hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcC----------------
Confidence 3455555666655555432 2 24455555555555555553222 44555555555555544
Q ss_pred EEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcc
Q 045861 314 LLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKL 393 (508)
Q Consensus 314 L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l 393 (508)
... ..+..+++|++|++++|.+++. ..+..+++|+.|++++|.+.+. ..+..+++|+.|++++|.+
T Consensus 103 --------~~~--~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 103 --------KDL--SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp --------CCG--GGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred --------CCC--hhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 332 1244445555555555555432 2344555555555555555532 3455566666666666666
Q ss_pred cccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 394 QGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 394 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++..+ +..+++|+.|++++|.+++. + .+..+++|+.|++++|++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~ 213 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECL 213 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEE
T ss_pred ccchh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCccc
Confidence 53322 55566666666666666543 2 3555666666666666654
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.78 E-value=2.6e-18 Score=173.70 Aligned_cols=182 Identities=23% Similarity=0.257 Sum_probs=120.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+++.|++++|.+++ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 66777777776664 44433 256777777777776 444 345677777777777664 444 433 77777777
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+|.++++.. .+++|++|++++|.+++ +|. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~lp~----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTMLPE----LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSCCCC----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCCCCC----cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 777776333 56777777777777774 443 45677777777777775 454 44 77788888887777 55
Q ss_pred cccccCCCCC-------CEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 398 PESLGDLRSL-------EFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 398 ~~~~~~l~~L-------~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
|. +.. +| +.|++++|+++ .+|..+..+++|+.|++++|++++.+|.
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~ 248 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRE 248 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHH
Confidence 55 443 56 77888888877 4566666677888888888887766554
|
| >1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.1e-18 Score=161.01 Aligned_cols=168 Identities=27% Similarity=0.385 Sum_probs=110.9
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
+++.|++++|.+... + .+..+++|++|++++|.+.+..+ +..+++|++|++++|.+.+ + ..+..+++|++|+++
T Consensus 47 ~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 47 SIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-L-SSLKDLKKLKSLSLE 120 (291)
T ss_dssp TCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-G-GGGTTCTTCCEEECT
T ss_pred cccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-C-hhhccCCCCCEEECC
Confidence 899999999988754 3 48889999999999999986544 8999999999999999985 3 347778888888888
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCcc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSI 373 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (508)
+|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|++| ++++|++.+..
T Consensus 121 ~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L------------------------~L~~N~l~~~~ 172 (291)
T 1h6t_A 121 HNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL------------------------SLEDNQISDIV 172 (291)
T ss_dssp TSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE------------------------ECCSSCCCCCG
T ss_pred CCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEE------------------------EccCCccccch
Confidence 8877542 3455566666666666665543 334444444444 44444444332
Q ss_pred chhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 374 PTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 374 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+ +..+++|+.|++++|.+++ ++ .+..+++|+.|++++|++..
T Consensus 173 ~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 P--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp G--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred h--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 2 4445555555555555542 22 24555555555555555543
|
| >3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} | Back alignment and structure |
|---|
Probab=99.76 E-value=4.4e-18 Score=171.98 Aligned_cols=188 Identities=23% Similarity=0.306 Sum_probs=121.8
Q ss_pred ccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEee
Q 045861 214 SLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFY 293 (508)
Q Consensus 214 ~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 293 (508)
+++.|+++++.+.+ +|..+ .++|++|++++|.++ .+| ..+++|++|++++|.+++ +|. +.. +|++|+++
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD 128 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC
T ss_pred CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC
Confidence 44555555554443 33322 245666666666665 334 335666667776666664 444 333 67777777
Q ss_pred CceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCcc
Q 045861 294 DNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSI 373 (508)
Q Consensus 294 ~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 373 (508)
+|.+++ +|. .+++|+.|++++|.++++.. .+++|++|++++|.+++ +|. +. ++|+.|++++|.++ .+
T Consensus 129 ~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~l 195 (571)
T 3cvr_A 129 NNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTNLLE-SL 195 (571)
T ss_dssp SSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSSCCS-SC
T ss_pred CCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCCCCC-ch
Confidence 776654 443 46777777777777765332 45677777777777774 444 44 77888888888777 45
Q ss_pred chhhhcCCCC-------CEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCC
Q 045861 374 PTVIGGLSNL-------AFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLL 429 (508)
Q Consensus 374 ~~~~~~l~~L-------~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~ 429 (508)
|. +.. +| +.|++++|.++ .+|..+..+++|+.|++++|++++.+|..+..++
T Consensus 196 p~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l~ 254 (571)
T 3cvr_A 196 PA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQT 254 (571)
T ss_dssp CC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHHH
T ss_pred hh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHhh
Confidence 54 433 56 89999999988 5777777788999999999999888887776643
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.75 E-value=4.6e-18 Score=149.16 Aligned_cols=150 Identities=17% Similarity=0.223 Sum_probs=88.7
Q ss_pred CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEEC
Q 045861 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDL 364 (508)
Q Consensus 285 ~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l 364 (508)
++|++|++++|.+. .++ .+..+++|++|++++|.+... ..+..+++|++|++++|.+++..+..+..+++|++|++
T Consensus 44 ~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~~~--~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~L 119 (197)
T 4ezg_A 44 NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDI 119 (197)
T ss_dssp HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCSCC--GGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEEC
T ss_pred CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCCcc--hhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEe
Confidence 34444444444443 222 234444455555554433322 24455566666666666666555566666677777777
Q ss_pred CCCcCCCccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 365 SRNNLSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 365 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++|.+++..+..+..+++|++|++++|. ++ .++ .+..+++|+.|++++|.+++.. .+..+++|++|++++|++.
T Consensus 120 s~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~~~--~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 120 SHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHDYR--GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCCCT--TGGGCSSCCEEEECBC---
T ss_pred cCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcChH--HhccCCCCCEEEeeCcccC
Confidence 7777766566667777777777777776 54 334 4667777777777777777532 5667777777777777764
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.2e-17 Score=145.65 Aligned_cols=155 Identities=24% Similarity=0.268 Sum_probs=98.1
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCc-cccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL-DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
+.++++++.++.+... + ..++++|++++|.+++..+. .+..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~~ip~~-~--~~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRD-I--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCSSCCSC-C--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcCcCccC-C--CCCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 4566666666543322 1 12666677777766644443 366677777777777777766667777777777777777
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|++++..+..|..+++|++|++++|++++..|..+..+++|++|++++|++.+..+.......++...+.++...|+-|
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P 166 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCC
Confidence 7777666666777777777777777777777777777777777777777777555443222223333444444555544
|
| >4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.73 E-value=1.7e-17 Score=145.58 Aligned_cols=154 Identities=18% Similarity=0.223 Sum_probs=104.5
Q ss_pred cCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcE
Q 045861 258 GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 337 (508)
..+++|++|++++|.+. .++ .+..+++|++|++++|.+. ....+..+++|++|++++|.+++..+..+..+++|++
T Consensus 41 ~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~ 116 (197)
T 4ezg_A 41 AQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTL 116 (197)
T ss_dssp HHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCE
T ss_pred hhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCE
Confidence 34455666666666655 333 4556666666666666442 2235666777777777777777666666777777777
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCc-CCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN-LSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
|++++|.+++..+..+..+++|++|++++|+ +. .++ .+..+++|++|++++|.+++ ++ .+..+++|++|++++|+
T Consensus 117 L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~ 192 (197)
T 4ezg_A 117 LDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQT 192 (197)
T ss_dssp EECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC-
T ss_pred EEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcc
Confidence 7777777776666777788888888888887 55 344 57788888888888888874 33 57778888888888888
Q ss_pred ccc
Q 045861 417 FSG 419 (508)
Q Consensus 417 ~~~ 419 (508)
+.+
T Consensus 193 i~~ 195 (197)
T 4ezg_A 193 IGG 195 (197)
T ss_dssp ---
T ss_pred cCC
Confidence 763
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.7e-17 Score=168.11 Aligned_cols=173 Identities=22% Similarity=0.340 Sum_probs=92.9
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+..+++|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.+.+ + ..+..+++|+
T Consensus 39 ~~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l-~~l~~l~~L~ 112 (605)
T 1m9s_A 39 QNELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-L-SSLKDLKKLK 112 (605)
T ss_dssp HHHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-TTSTTCTTCC
T ss_pred hhcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-C-hhhccCCCCC
Confidence 34566666666666666532 2 45666666666666666664332 5666666666666666542 2 2455556666
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
.|++++|.+... ..+..+++|+.|+|++|.+++. ..+..+++|+.|+|++|.+.+..+ +..+++|+.|+|++|.
T Consensus 113 ~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~ 186 (605)
T 1m9s_A 113 SLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNH 186 (605)
T ss_dssp EEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSC
T ss_pred EEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCC
Confidence 666666655543 2344555555555555555532 344455555555555555554333 4455555555555555
Q ss_pred ccccCcccccCCCCCCEEECCCCcccc
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+++. ..+..+++|+.|+|++|.+..
T Consensus 187 i~~l--~~l~~l~~L~~L~L~~N~l~~ 211 (605)
T 1m9s_A 187 ISDL--RALAGLKNLDVLELFSQECLN 211 (605)
T ss_dssp CCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred CCCC--hHHccCCCCCEEEccCCcCcC
Confidence 5432 234445555555555555543
|
| >1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A | Back alignment and structure |
|---|
Probab=99.73 E-value=2.6e-17 Score=168.24 Aligned_cols=171 Identities=23% Similarity=0.338 Sum_probs=86.6
Q ss_pred cCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcE
Q 045861 258 GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 337 (508)
..++.|+.|++++|.+.. ++ .+..+++|+.|+|++|.+.+..+ +..+++|+.|++++|.+.... .+..+++|++
T Consensus 40 ~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~--~l~~l~~L~~ 113 (605)
T 1m9s_A 40 NELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLS--SLKDLKKLKS 113 (605)
T ss_dssp HHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCT--TSTTCTTCCE
T ss_pred hcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCCCh--hhccCCCCCE
Confidence 344555555555555542 22 34555555555555555543222 445555555555555554321 3445555555
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
|+|++|.+.+. ..+..+++|+.|++++|.+.+. ..+..+++|+.|+|++|.+++..| +..+++|+.|+|++|.+
T Consensus 114 L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~i 187 (605)
T 1m9s_A 114 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHI 187 (605)
T ss_dssp EECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCC
T ss_pred EEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEECcCCCC
Confidence 55555555432 2344555555555555555532 344555555555555555553333 45555555555555555
Q ss_pred cccCcccccCCCCCCEEeCCCCcce
Q 045861 418 SGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 418 ~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
++. ..+..+++|+.|++++|++.
T Consensus 188 ~~l--~~l~~l~~L~~L~L~~N~l~ 210 (605)
T 1m9s_A 188 SDL--RALAGLKNLDVLELFSQECL 210 (605)
T ss_dssp CBC--GGGTTCTTCSEEECCSEEEE
T ss_pred CCC--hHHccCCCCCEEEccCCcCc
Confidence 532 23455555555555555554
|
| >1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=4.6e-17 Score=141.94 Aligned_cols=133 Identities=23% Similarity=0.335 Sum_probs=118.9
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCCCccch-hhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPT-VIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
++++++++.++ .+|..+. ..+++|++++|.+.+..+. .|..+++|++|++++|.+++..|..|..+++|++|++++
T Consensus 11 ~~l~~s~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~ 87 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGE 87 (192)
T ss_dssp TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CEEEcCCCCcC-cCccCCC--CCCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCC
Confidence 78999999997 5666543 3899999999999976654 489999999999999999988899999999999999999
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
|++++..+..|.++++|++|++++|++++..|.. ..+.+++.+++++|+|.|+|+..
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~ 145 (192)
T 1w8a_A 88 NKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA 145 (192)
T ss_dssp CCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH
T ss_pred CcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcch
Confidence 9999998889999999999999999999887765 45788999999999999999853
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=5.5e-17 Score=141.40 Aligned_cols=128 Identities=25% Similarity=0.404 Sum_probs=70.8
Q ss_pred EEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCc
Q 045861 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 337 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 416 (508)
.++++++.++ .+|..+ .+++++|++++|.++ .+|..|..+++|++|++++|.+++..+..|.++++|++|++++|+
T Consensus 14 ~l~~~~~~l~-~ip~~~--~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~ 89 (193)
T 2wfh_A 14 VVRCSNKGLK-VLPKGI--PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNR 89 (193)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEcCCCCCC-cCCCCC--CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCc
Confidence 4455555554 333322 235555566666555 344555556666666666666655545555566666666666666
Q ss_pred ccccCcccccCCCCCCEEeCCCCcceecCCCc--cccCCCCcccccCCCCCCCCC
Q 045861 417 FSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 417 ~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+++..+.+|..+++|++|++++|+++ .+|.. ..+.+++.+++++|||.|+|.
T Consensus 90 l~~i~~~~f~~l~~L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 90 LRCIPPRTFDGLKSLRLLSLHGNDIS-VVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCBCCTTTTTTCTTCCEEECCSSCCC-BCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred cCEeCHHHhCCCCCCCEEECCCCCCC-eeChhhhhcCccccEEEeCCCCeecCCc
Confidence 66555555666666666666666665 33332 234555666666666666665
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.71 E-value=2.8e-17 Score=150.90 Aligned_cols=166 Identities=23% Similarity=0.322 Sum_probs=81.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+++.++++++.+.+.. .+..+++|++|++++|.+.. ++ .+..+++|++|++++|.+.+..+ +..+++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3444555555554322 34555566666666665552 22 45555555555555555543222 4555555555555
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI 397 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~ 397 (508)
+|.+.+.... .. ++|+.|++++|++++. ..+..+++|++|++++|++++.
T Consensus 94 ~N~l~~l~~~--------------------------~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~- 143 (263)
T 1xeu_A 94 RNRLKNLNGI--------------------------PS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI- 143 (263)
T ss_dssp SSCCSCCTTC--------------------------CC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-
T ss_pred CCccCCcCcc--------------------------cc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-
Confidence 5555443221 11 4444455555544431 1244455555555555555432
Q ss_pred cccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 398 PESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+ .+..+++|+.|++++|++++. ..+..+++|+.|++++|++.
T Consensus 144 ~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~ 185 (263)
T 1xeu_A 144 V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCV 185 (263)
T ss_dssp G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEE
T ss_pred h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCccc
Confidence 2 344455555555555555543 34445555555555555554
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.70 E-value=1.2e-17 Score=158.94 Aligned_cols=288 Identities=12% Similarity=0.084 Sum_probs=136.6
Q ss_pred CCCCcEEecCCCcCCCCCCcCCcC-CCCCcEEEcccCCCC--CCCCcccCCCCCCCeEEccCCccccCCchhccC-----
Q 045861 20 LPRLQALDINNNHVTGPVPRNLWQ-CQELIAISLSHNQLT--GLIPRDIGNLTSARALLLGNNNLIGEIPHEIGN----- 91 (508)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~-~~~L~~L~L~~n~l~--~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~----- 91 (508)
+++++.|.++++--. .--..+.. +++|++|||++|++. ..... .++.++.+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i~~-~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~---~~~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKLNA-EDFRHLRDEFPSLKVLDISNAEIKMYSGKAG---TYPNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEECH-HHHHHHHHSCTTCCEEEEEEEEECCEEESSS---SSGGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccccH-HHHHHHHHhhccCeEEecCcceeEEecCccc---ccccccccccccccc---CHHHhccccccc
Confidence 345666666653211 10111222 566777777777665 22111 222244555544432 2344555
Q ss_pred ---CCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCC
Q 045861 92 ---LHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSF 168 (508)
Q Consensus 92 ---l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~ 168 (508)
+++|+.+++.+ .++ .....+|.++++|+.|++.+|.+....+.+|..+.++..+....
T Consensus 97 ~~g~~~L~~l~L~~-~i~------------------~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~ 157 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIK------------------NIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGS 157 (329)
T ss_dssp EEECTTCCC-CBCT-TCC------------------EECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTC
T ss_pred ccccCCCcEEECCc-ccc------------------chhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcc
Confidence 66666666655 443 24445677777888888887777766677777666666665544
Q ss_pred CcCcCCCCCCcccccccCCCCCC-EEEccCccCccCCChhhhhc---ccccCeeEccCCcCcccCChhhhcCCCCcEEEc
Q 045861 169 NYLTSSTSELSFLSSLRNCRNLK-VIDLTGNQLHGILPSSMGNL---STSLEYIYMPYCRRSGRIPEEIGNLINLITMSL 244 (508)
Q Consensus 169 n~~~~~~~~~~~~~~l~~~~~L~-~L~l~~~~~~~~~~~~~~~~---~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l 244 (508)
.........+ ....|..+..|+ .+.+.... .++..+... ..+++++.+.+.-....... +.
T Consensus 158 ~~~~~~~~~i-~~~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~-l~---------- 222 (329)
T 3sb4_A 158 SDAYRFKNRW-EHFAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDNADFKL-IR---------- 222 (329)
T ss_dssp THHHHTSTTT-TTSCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCHHHHHH-HH----------
T ss_pred hhhhhccccc-cccccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecHHHHHH-HH----------
Confidence 2210000000 002344555555 34333211 111111111 12333333333211100000 11
Q ss_pred ccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC-EEEcCCCcccc
Q 045861 245 GINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR-NLLLHSNVLTY 323 (508)
Q Consensus 245 ~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~-~L~l~~n~~~~ 323 (508)
..+++|+.+++++|.++.....+|.++++|+++++.+| +.......|..+++|+ .+++.+ .++.
T Consensus 223 -------------~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~ 287 (329)
T 3sb4_A 223 -------------DYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA 287 (329)
T ss_dssp -------------HHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE
T ss_pred -------------HhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE
Confidence 12444555555555444444444555555555555554 4444444555555555 555555 4554
Q ss_pred cCCccccCccCCcEEEccCCccccccCccccCCCCCcEEE
Q 045861 324 VIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGID 363 (508)
Q Consensus 324 ~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 363 (508)
+.+..|..+++|+.+++.+|.++...+.+|.++++|+.++
T Consensus 288 I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 288 IEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred EchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 5555555556666666555555545555555555555554
|
| >1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=99.70 E-value=6.9e-17 Score=148.26 Aligned_cols=165 Identities=22% Similarity=0.323 Sum_probs=111.6
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
+++.++++.+.+++. + .+..+++|++|++++|+++.. + .+..+++|++|++++|++.+..+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQSL-A-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCcccc-h-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 444555566655532 2 355566666666666666533 2 45566666666666666653322 5666666666666
Q ss_pred cccCCCC---CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCC
Q 045861 102 NNNFDGP---RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178 (508)
Q Consensus 102 ~n~~~~~---~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~ 178 (508)
+|.++.. ..++|++|++++|++++ + ..+..+++|++|++++|++++. + .++.+++|++|++++|.+...
T Consensus 94 ~N~l~~l~~~~~~~L~~L~L~~N~l~~-~-~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~---- 165 (263)
T 1xeu_A 94 RNRLKNLNGIPSACLSRLFLDNNELRD-T-DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT---- 165 (263)
T ss_dssp SSCCSCCTTCCCSSCCEEECCSSCCSB-S-GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC----
T ss_pred CCccCCcCccccCcccEEEccCCccCC-C-hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch----
Confidence 6665543 22567777777777664 2 4688899999999999999854 3 688899999999999988764
Q ss_pred cccccccCCCCCCEEEccCccCccC
Q 045861 179 SFLSSLRNCRNLKVIDLTGNQLHGI 203 (508)
Q Consensus 179 ~~~~~l~~~~~L~~L~l~~~~~~~~ 203 (508)
..+..+++|+.|++++|.+...
T Consensus 166 ---~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 ---GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp ---TTSTTCCCCCEEEEEEEEEECC
T ss_pred ---HHhccCCCCCEEeCCCCcccCC
Confidence 4477889999999999988755
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.69 E-value=2.2e-15 Score=147.11 Aligned_cols=335 Identities=12% Similarity=0.076 Sum_probs=162.7
Q ss_pred CCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCC
Q 045861 33 VTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSN 112 (508)
Q Consensus 33 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 112 (508)
++.+-..+|.+|.+|+.+.+.. .++.+...+|.++.+|+.+++..+ +..+...+|.++.+|+.+.+..+- ..
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l-~~----- 130 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLML-KS----- 130 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTC-CE-----
T ss_pred EeEhHHHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCce-ee-----
Confidence 3334455677778888888764 366666677778888888888654 444555677777777776665431 10
Q ss_pred CCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCE
Q 045861 113 LERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKV 192 (508)
Q Consensus 113 L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~ 192 (508)
....+|.++..++...... .......+|..+.+|+.+.+..+. ..++. ..|.++.+|+.
T Consensus 131 -------------i~~~aF~~~~~~~~~~~~~--~~~i~~~aF~~c~~L~~i~l~~~~-~~I~~-----~~F~~c~~L~~ 189 (394)
T 4fs7_A 131 -------------IGVEAFKGCDFKEITIPEG--VTVIGDEAFATCESLEYVSLPDSM-ETLHN-----GLFSGCGKLKS 189 (394)
T ss_dssp -------------ECTTTTTTCCCSEEECCTT--CCEECTTTTTTCTTCCEEECCTTC-CEECT-----TTTTTCTTCCB
T ss_pred -------------ecceeeecccccccccCcc--ccccchhhhcccCCCcEEecCCcc-ceecc-----ccccCCCCceE
Confidence 1122333332222222111 111233445555666666554332 22221 33555555555
Q ss_pred EEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCc
Q 045861 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272 (508)
Q Consensus 193 L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~ 272 (508)
+.+..+ +.......+.... .|+.+.+..+ ... ..........|+.+.+....
T Consensus 190 i~l~~~-~~~I~~~~F~~~~-~L~~i~~~~~------------------------~~~--i~~~~~~~~~l~~i~ip~~~ 241 (394)
T 4fs7_A 190 IKLPRN-LKIIRDYCFAECI-LLENMEFPNS------------------------LYY--LGDFALSKTGVKNIIIPDSF 241 (394)
T ss_dssp CCCCTT-CCEECTTTTTTCT-TCCBCCCCTT------------------------CCE--ECTTTTTTCCCCEEEECTTC
T ss_pred EEcCCC-ceEeCchhhcccc-ccceeecCCC------------------------ceE--eehhhcccCCCceEEECCCc
Confidence 555332 2211112222211 2222222211 110 01111122333333333221
Q ss_pred CccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCcc
Q 045861 273 LEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLD 352 (508)
Q Consensus 273 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~ 352 (508)
.......|..+..++.+.+..+.. ......|..++.++.+......+ ....|..+.+|+.+.+.++ ++.....+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i---~~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIV---PEKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEE---CTTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceee---ccccccccccccccccccc-cceechhh
Confidence 112223344444444444443321 13333444455555554443322 2234555556666655543 33344445
Q ss_pred ccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCC
Q 045861 353 IGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLE 432 (508)
Q Consensus 353 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~ 432 (508)
|..+.+|+.+++..+ ++.....+|.+|++|+.+++..+ ++.+...+|.++++|+.+++..+ +. .+..+|.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 666666666666543 44444566777777777777665 55455677777777777777654 22 2345677777766
Q ss_pred EE
Q 045861 433 YL 434 (508)
Q Consensus 433 ~L 434 (508)
++
T Consensus 392 ~I 393 (394)
T 4fs7_A 392 WI 393 (394)
T ss_dssp EE
T ss_pred EE
Confidence 54
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.69 E-value=1.9e-19 Score=182.91 Aligned_cols=190 Identities=23% Similarity=0.220 Sum_probs=127.0
Q ss_pred cCCCCcEEEcccCccccccCccccCCCCCCcEEccCCc-------------CccccchhhhCCCCCcEEE-eeCceeeee
Q 045861 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK-------------LEGSIPDSLCNLGRLVELQ-FYDNKLFGS 300 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~-------------l~~~~~~~~~~l~~L~~L~-L~~n~~~~~ 300 (508)
.+++|+.|++++|.+. .+|..++.+++|+.|++++|. ..+..+..+..+++|+.|+ ++.|.+
T Consensus 347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~--- 422 (567)
T 1dce_A 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL--- 422 (567)
T ss_dssp TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH---
T ss_pred cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc---
Confidence 4555666666666655 455556666666666654443 2233444445555555554 333321
Q ss_pred CCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcC
Q 045861 301 IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGL 380 (508)
Q Consensus 301 ~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 380 (508)
..|+.+.+.+|.+....+ ..|+.|++++|.+++ +|. +..+++|+.|++++|.++ .+|..+..+
T Consensus 423 --------~~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 485 (567)
T 1dce_A 423 --------DDLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAAL 485 (567)
T ss_dssp --------HHHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGC
T ss_pred --------chhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcC
Confidence 123333344444443221 247888888888884 554 788888888888888888 677888888
Q ss_pred CCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccC-cccccCCCCCCEEeCCCCcceecCCC
Q 045861 381 SNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFI-PRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 381 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
++|+.|+|++|.+++ +| .+..+++|+.|+|++|++++.. |..+..+++|+.|++++|++++..|.
T Consensus 486 ~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~ 551 (567)
T 1dce_A 486 RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGI 551 (567)
T ss_dssp TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSC
T ss_pred CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccH
Confidence 888888888888884 55 6888888888888888888776 88888888888888888888855443
|
| >2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=1.2e-16 Score=139.33 Aligned_cols=131 Identities=24% Similarity=0.321 Sum_probs=111.5
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 391 (508)
+.++++++.++.+.... .++|++|++++|.++ .+|..+..+++|+.|++++|.+++..+..|.++++|++|++++|
T Consensus 13 ~~l~~~~~~l~~ip~~~---~~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N 88 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGI---PRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN 88 (193)
T ss_dssp TEEECTTSCCSSCCSCC---CTTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CEEEcCCCCCCcCCCCC---CCCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence 56777777777554322 257888999999888 66788889999999999999999877888999999999999999
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
.++...+..|..+++|+.|+|++|.++...+..|..+++|+.|++++|++.+..+
T Consensus 89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C~c~ 143 (193)
T 2wfh_A 89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYCDCN 143 (193)
T ss_dssp CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeecCCc
Confidence 9998878889999999999999999998777789999999999999999986444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.68 E-value=2.6e-16 Score=134.16 Aligned_cols=138 Identities=22% Similarity=0.251 Sum_probs=110.1
Q ss_pred CCCCCEEEcCCCccc-ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEE
Q 045861 308 LSPLRNLLLHSNVLT-YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386 (508)
Q Consensus 308 ~~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 386 (508)
.++|+.|++++|.+. +..+..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|
T Consensus 23 ~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 100 (168)
T 2ell_A 23 PAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHL 100 (168)
T ss_dssp TTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEE
T ss_pred cccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEE
Confidence 367777777777776 34455567778888888888888754 667788889999999999887678888889999999
Q ss_pred ECcCCcccccC-cccccCCCCCCEEECCCCcccccCc---ccccCCCCCCEEeCCCCcceecCCCc
Q 045861 387 SLAYNKLQGSI-PESLGDLRSLEFLDLSNNSFSGFIP---RSFEKLLYLEYLNLSFNRLKGEIPSG 448 (508)
Q Consensus 387 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~n~l~~~~p~~ 448 (508)
++++|.+++.. +..+..+++|+.|++++|.+++..+ ..+..+++|++|++++|.+. .+|.+
T Consensus 101 ~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 101 NLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp ECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred eccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999998532 2678889999999999999986655 47888999999999999987 56653
|
| >3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=99.67 E-value=2.6e-16 Score=149.74 Aligned_cols=250 Identities=14% Similarity=0.072 Sum_probs=141.1
Q ss_pred CCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCc--ccCChhhhcCCCCcEEEcccCccccccCccccC-----
Q 045861 187 CRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRS--GRIPEEIGNLINLITMSLGINKLTGSIPISLGK----- 259 (508)
Q Consensus 187 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~--~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~----- 259 (508)
+.+++.|.++++- .......+....++|+.|++++|++. ...+..+ +.+..+.+..+.+ ...+|.+
T Consensus 24 ~~~l~~L~l~g~i-~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~~I---~~~aF~~~~~~~ 96 (329)
T 3sb4_A 24 ANSITHLTLTGKL-NAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMANFV---PAYAFSNVVNGV 96 (329)
T ss_dssp HHHCSEEEEEEEE-CHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTTEE---CTTTTEEEETTE
T ss_pred hCceeEEEEeccc-cHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccccc---CHHHhccccccc
Confidence 3457777777641 11111223332336777777777665 2111111 1123333333322 2334455
Q ss_pred ---CCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcc----cccCCccccCc
Q 045861 260 ---LQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVL----TYVIPSTFLSL 332 (508)
Q Consensus 260 ---~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~----~~~~~~~~~~~ 332 (508)
+++|+++++.+ .+......+|.++++|+++++.+|.+....+..|..+.++..+....... .......|..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 77888888877 66655666777788888888887777666667777766666665554221 11222233333
Q ss_pred cCCc-EEEc-------------------------cCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEE
Q 045861 333 RDIL-VFNF-------------------------SSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386 (508)
Q Consensus 333 ~~L~-~L~L-------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 386 (508)
..|+ .+.+ .++-...........+++|+++++++|+++.....+|.++++|+++
T Consensus 176 ~~L~~~i~~~~~~~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l 255 (329)
T 3sb4_A 176 EPLETTIQVGAMGKLEDEIMKAGLQPRDINFLTIEGKLDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKI 255 (329)
T ss_dssp CCCEEEEEECTTCCHHHHHHHTTCCGGGCSEEEEEECCCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEE
T ss_pred cccceeEEecCCCcHHHHHhhcccCccccceEEEeeeecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEE
Confidence 3333 2222 2111000000000125677777777777776556667777777777
Q ss_pred ECcCCcccccCcccccCCCCCC-EEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 387 SLAYNKLQGSIPESLGDLRSLE-FLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 387 ~L~~n~l~~~~~~~~~~l~~L~-~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
++.+| ++.+...+|.++++|+ .+++.+ .++...+.+|.+|++|+.+++++|.+. .++.
T Consensus 256 ~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~-~I~~ 314 (329)
T 3sb4_A 256 KLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKIT-TLGD 314 (329)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCC-EECT
T ss_pred ECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccC-ccch
Confidence 77776 6556667777777777 777777 666566677777777777777777776 4444
|
| >2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A | Back alignment and structure |
|---|
Probab=99.67 E-value=4.6e-16 Score=132.66 Aligned_cols=139 Identities=18% Similarity=0.154 Sum_probs=113.5
Q ss_pred CCCCCcEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 19 HLPRLQALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
..++|++|++++|.+. +.+|..+..+++|++|++++|.+++. ..+..+++|++|++++|++.+..|..+..+++|++
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 3578999999999987 56787788899999999999998866 78889999999999999998667888888899999
Q ss_pred eeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC---hhhcCCCCCCEEeCCCCcCcCC
Q 045861 98 LVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP---STIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 98 L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
|++++|.++.. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|++.+|.+...
T Consensus 100 L~Ls~N~l~~~-----------------~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~ 162 (168)
T 2ell_A 100 LNLSGNKLKDI-----------------STLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQEA 162 (168)
T ss_dssp EECBSSSCCSS-----------------GGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSCBC
T ss_pred EeccCCccCcc-----------------hhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChhhc
Confidence 98888877621 112577888999999999999885554 4788889999999998887765
Q ss_pred CC
Q 045861 175 TS 176 (508)
Q Consensus 175 ~~ 176 (508)
+.
T Consensus 163 ~~ 164 (168)
T 2ell_A 163 PD 164 (168)
T ss_dssp CS
T ss_pred cc
Confidence 54
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.66 E-value=8.7e-15 Score=142.19 Aligned_cols=247 Identities=11% Similarity=0.119 Sum_probs=169.6
Q ss_pred cccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCC
Q 045861 183 SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQK 262 (508)
Q Consensus 183 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~ 262 (508)
+|.++ +|+.+.+..+ ++.....+|... +|+.+.+.. .+...-+..|..|.+|+.+++..+.++.....+|. +.+
T Consensus 131 aF~~~-~L~~i~l~~~-i~~I~~~aF~~~--~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~ 204 (401)
T 4fdw_A 131 AFRNS-QIAKVVLNEG-LKSIGDMAFFNS--TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAG 204 (401)
T ss_dssp TTTTC-CCSEEECCTT-CCEECTTTTTTC--CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCC
T ss_pred hcccC-CccEEEeCCC-ccEECHHhcCCC--CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecc
Confidence 34443 4666665443 333444444442 566666654 33334445677788888888888777755555555 578
Q ss_pred CCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccC
Q 045861 263 LQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSS 342 (508)
Q Consensus 263 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~ 342 (508)
|+.+.+..+ +......+|.++++|+.+++.++ +.......|.. .+|+.+.+. +.++.+....|..+++|+.+++.+
T Consensus 205 L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~~I~~~aF~~c~~L~~l~l~~ 280 (401)
T 4fdw_A 205 IEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVTNIASRAFYYCPELAEVTTYG 280 (401)
T ss_dssp CSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCCEECTTTTTTCTTCCEEEEES
T ss_pred cCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCccEEChhHhhCCCCCCEEEeCC
Confidence 888888744 55455667888888888888765 34455556665 788888884 456667777888888888888887
Q ss_pred Cccc-----cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 343 NSLN-----GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 343 n~l~-----~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
+.+. .....+|.++++|+.+++.+ .+......+|.++++|+.+++..+ ++.+...+|.++ +|+.+++++|..
T Consensus 281 ~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~ 357 (401)
T 4fdw_A 281 STFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTP 357 (401)
T ss_dssp SCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSC
T ss_pred ccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCC
Confidence 7654 35566778888888888884 466566677888888888888655 555667788888 888888888887
Q ss_pred cccCcccccCCC-CCCEEeCCCCcce
Q 045861 418 SGFIPRSFEKLL-YLEYLNLSFNRLK 442 (508)
Q Consensus 418 ~~~~~~~l~~l~-~L~~L~l~~n~l~ 442 (508)
....+..|.+++ .++.|++..+.+.
T Consensus 358 ~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 358 PQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp CBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred cccccccccCCCCCccEEEeCHHHHH
Confidence 777777777774 6778877776654
|
| >4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=99.65 E-value=1.2e-14 Score=141.94 Aligned_cols=318 Identities=10% Similarity=0.016 Sum_probs=212.5
Q ss_pred CCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCC
Q 045861 57 LTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASK 136 (508)
Q Consensus 57 l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~ 136 (508)
++.+...+|.++.+|+.+.+..+ +..+...+|.++++|+.+++..+ +. .....+|.++.+
T Consensus 59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~------------------~I~~~aF~~c~~ 118 (394)
T 4fs7_A 59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VK------------------MIGRCTFSGCYA 118 (394)
T ss_dssp EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CC------------------EECTTTTTTCTT
T ss_pred EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ce------------------Eccchhhccccc
Confidence 34455566777777777777643 55455666777777777776543 22 123345666666
Q ss_pred CcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccC
Q 045861 137 LSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLE 216 (508)
Q Consensus 137 L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~ 216 (508)
|+.+.+..+ +......+|..+..++....... ..+.. .+|.++++|+.+.+..+. .
T Consensus 119 L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~~~~--~~i~~-----~aF~~c~~L~~i~l~~~~-~--------------- 174 (394)
T 4fs7_A 119 LKSILLPLM-LKSIGVEAFKGCDFKEITIPEGV--TVIGD-----EAFATCESLEYVSLPDSM-E--------------- 174 (394)
T ss_dssp CCCCCCCTT-CCEECTTTTTTCCCSEEECCTTC--CEECT-----TTTTTCTTCCEEECCTTC-C---------------
T ss_pred chhhcccCc-eeeecceeeecccccccccCccc--cccch-----hhhcccCCCcEEecCCcc-c---------------
Confidence 666655433 33344445555433222221111 11111 346666666666654321 1
Q ss_pred eeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCce
Q 045861 217 YIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNK 296 (508)
Q Consensus 217 ~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 296 (508)
......|..+.+|+.+++..+ +......++.++..|+.+.+..+... ....+....+|+.+.+....
T Consensus 175 ----------~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~~l~~i~ip~~~ 241 (394)
T 4fs7_A 175 ----------TLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKTGVKNIIIPDSF 241 (394)
T ss_dssp ----------EECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTCCCCEEEECTTC
T ss_pred ----------eeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccCCCceEEECCCc
Confidence 112234566777777777654 33345567888889998888776432 23344556789999987653
Q ss_pred eeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchh
Q 045861 297 LFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTV 376 (508)
Q Consensus 297 ~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~ 376 (508)
.......+..+..++.+.+..+.. ......|..+..++.+......+. ..++..+.+|+.+.+.++ +......+
T Consensus 242 -~~i~~~~f~~~~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~a 315 (394)
T 4fs7_A 242 -TELGKSVFYGCTDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEA 315 (394)
T ss_dssp -CEECSSTTTTCSSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTT
T ss_pred -eecccccccccccceeEEcCCCcc-eeeccccccccccceeccCceeec---cccccccccccccccccc-cceechhh
Confidence 335566788899999999987644 467778999999999998876543 456788899999999765 66566778
Q ss_pred hhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCC
Q 045861 377 IGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439 (508)
Q Consensus 377 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 439 (508)
|.++++|+.+++..+ ++.+...+|.++++|+.+++..+ ++.....+|.+|++|+.+++..+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~ 376 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR 376 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC
Confidence 999999999999765 66567789999999999999877 77677789999999999998654
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.65 E-value=6.6e-16 Score=128.79 Aligned_cols=128 Identities=21% Similarity=0.250 Sum_probs=91.7
Q ss_pred CCCCEEEcCCCccc-ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEE
Q 045861 309 SPLRNLLLHSNVLT-YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFS 387 (508)
Q Consensus 309 ~~L~~L~l~~n~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~ 387 (508)
++|+.|++++|.+. +..+..+..+++|++|++++|.+++. ..+..+++|++|++++|.+.+..|..+..+++|++|+
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~ 94 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN 94 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence 55666666666665 34455556666777777777776644 5567777888888888888766777777788888888
Q ss_pred CcCCccccc-CcccccCCCCCCEEECCCCcccccCc---ccccCCCCCCEEeCCC
Q 045861 388 LAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSGFIP---RSFEKLLYLEYLNLSF 438 (508)
Q Consensus 388 L~~n~l~~~-~~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~l~~ 438 (508)
+++|.+++. .+..+..+++|++|++++|.+++..+ ..+..+++|++|++++
T Consensus 95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 888888753 23667778888888888888886655 4677788888887763
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=99.65 E-value=9.7e-19 Score=177.73 Aligned_cols=217 Identities=19% Similarity=0.123 Sum_probs=142.4
Q ss_pred cCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCC
Q 045861 185 RNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264 (508)
Q Consensus 185 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~ 264 (508)
..++.|+.|++++|.+. .+|..+..+. +|+.|+++++......+..+ ..+...+..|..++.+++|+
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~-~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~~L~ 412 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCK-ELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFSTLK 412 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHH-HHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHHHHH
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHH-HHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHHhcc
Confidence 44556666666666554 4455555554 56665554432111111000 01113334566667777777
Q ss_pred cEE-ccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCC
Q 045861 265 GLY-LYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSN 343 (508)
Q Consensus 265 ~L~-l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n 343 (508)
.|+ ++.+.+. .|..+.+.+|.+....+ ..|+.|++++|.+++. +. +..+++|++|+|++|
T Consensus 413 ~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~l-p~-~~~l~~L~~L~Ls~N 473 (567)
T 1dce_A 413 AVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTVL-CH-LEQLLLVTHLDLSHN 473 (567)
T ss_dssp HHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSSC-CC-GGGGTTCCEEECCSS
T ss_pred cCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCCC-cC-ccccccCcEeecCcc
Confidence 776 5544332 23344444554432111 2477788888887764 33 778888888888888
Q ss_pred ccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccC-cccccCCCCCCEEECCCCcccccCc
Q 045861 344 SLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSI-PESLGDLRSLEFLDLSNNSFSGFIP 422 (508)
Q Consensus 344 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~ 422 (508)
.++ .+|..+..+++|+.|++++|.+++ +| .+..+++|+.|++++|.+++.. |..+..+++|+.|++++|++++.++
T Consensus 474 ~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 474 RLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp CCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred ccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 888 777888888999999999999885 56 7888999999999999998765 8888899999999999999987655
Q ss_pred cc---ccCCCCCCEEeC
Q 045861 423 RS---FEKLLYLEYLNL 436 (508)
Q Consensus 423 ~~---l~~l~~L~~L~l 436 (508)
.. +..+++|+.|++
T Consensus 551 ~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 551 IQERLAEMLPSVSSILT 567 (567)
T ss_dssp CTTHHHHHCTTCSEEEC
T ss_pred HHHHHHHHCcccCccCC
Confidence 32 344788888864
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.64 E-value=1.4e-15 Score=130.75 Aligned_cols=133 Identities=23% Similarity=0.203 Sum_probs=86.6
Q ss_pred CCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcC
Q 045861 311 LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAY 390 (508)
Q Consensus 311 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 390 (508)
.+.++++++.++..... ..++|++|++++|.+++..+..+..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~~~p~~---~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLTSVPTG---IPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCSSCCTT---CCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCccCCCC---CCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 35667777766654322 225677777777777655555566677777777777777655555566677777777777
Q ss_pred CcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 391 NKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 391 n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|.+++..+..+..+++|+.|++++|++++..+..+..+++|++|++++|++.+.+|
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 77765555556666777777777777775555556666777777777777665444
|
| >2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A | Back alignment and structure |
|---|
Probab=99.63 E-value=1e-15 Score=127.59 Aligned_cols=130 Identities=18% Similarity=0.181 Sum_probs=105.9
Q ss_pred CCCCCcEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 19 HLPRLQALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 19 ~~~~L~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
..++++.|++++|.+. +.+|..+..+++|++|++++|.+++. ..++.+++|++|++++|.+.+.+|..+..+++|++
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 3578999999999988 67788888999999999999999866 77889999999999999998667888888889999
Q ss_pred eeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC---hhhcCCCCCCEEeCC
Q 045861 98 LVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP---STIANLRNLQWLDLS 167 (508)
Q Consensus 98 L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~---~~~~~l~~L~~L~l~ 167 (508)
|++++|.+++. ..+..+..+++|++|++++|.+++..+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~~-----------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKDL-----------------STIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCSH-----------------HHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCCh-----------------HHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence 88888877621 123667788888899998888886555 467788888888775
|
| >2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} | Back alignment and structure |
|---|
Probab=99.62 E-value=3.3e-15 Score=128.47 Aligned_cols=131 Identities=26% Similarity=0.370 Sum_probs=97.6
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
.+.++++++.++ .+|..+ .++|++|++++|++.+..+..|..+++|++|++++|.+++..+..|..+++|++|++++
T Consensus 9 ~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 85 (177)
T 2o6r_A 9 GTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHE 85 (177)
T ss_dssp TTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCC
Confidence 467778888777 344332 36788888888888866666677788888888888888766566677788888888888
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCCCc--cccCCCCcccccCCCCCCCCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG--ESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~l~l~~n~~~c~~~ 469 (508)
|++++..+..+..+++|++|++++|+++ .+|.. ..+.+++.+++++|++.|+||
T Consensus 86 N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 141 (177)
T 2o6r_A 86 NKLQSLPNGVFDKLTQLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP 141 (177)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred CCccccCHHHhhCCcccCEEECcCCcce-EeCHHHhcCCcccCEEEecCCCeeccCc
Confidence 8888777677778888888888888887 44443 346778888888888888876
|
| >4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A | Back alignment and structure |
|---|
Probab=99.61 E-value=9.5e-14 Score=134.89 Aligned_cols=249 Identities=10% Similarity=0.086 Sum_probs=141.3
Q ss_pred CccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChh
Q 045861 128 PSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSS 207 (508)
Q Consensus 128 ~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 207 (508)
..+|.++ +|+.+.+..+ ++.....+|..+ +|+.+.+.. .+..++. .+|.+|.+|+.+++..+.++......
T Consensus 129 ~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~-----~aF~~c~~L~~l~l~~n~l~~I~~~a 199 (401)
T 4fdw_A 129 KDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKE-----DIFYYCYNLKKADLSKTKITKLPAST 199 (401)
T ss_dssp TTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECS-----STTTTCTTCCEEECTTSCCSEECTTT
T ss_pred HhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehH-----HHhhCcccCCeeecCCCcceEechhh
Confidence 3444443 5666666544 444445555553 466666654 3333322 34566666666666655554333333
Q ss_pred hhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCC
Q 045861 208 MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRL 287 (508)
Q Consensus 208 ~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L 287 (508)
|. +.+|+.+.+..+ +......+|.++++|+.+.+..+ +...-..+|.+ .+|
T Consensus 200 F~--------------------------~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L 250 (401)
T 4fdw_A 200 FV--------------------------YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGI 250 (401)
T ss_dssp TT--------------------------TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCC
T ss_pred Ee--------------------------ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCc
Confidence 32 244445544422 33334445555555666665543 33233344444 456
Q ss_pred cEEEeeCceeeeeCCcccCCCCCCCEEEcCCCccc-----ccCCccccCccCCcEEEccCCccccccCccccCCCCCcEE
Q 045861 288 VELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLT-----YVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGI 362 (508)
Q Consensus 288 ~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~-----~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L 362 (508)
+.+.+.+ .+.......|..+++|+.+++.++.+. .+....|..|++|+.+++.+ .++.....+|.++.+|+.+
T Consensus 251 ~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l 328 (401)
T 4fdw_A 251 TTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQL 328 (401)
T ss_dssp SEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEE
T ss_pred cEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEE
Confidence 6666633 233444555666666666666655443 45556677777777777773 3554556667777777777
Q ss_pred ECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCC-CCCEEECCCCccc
Q 045861 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR-SLEFLDLSNNSFS 418 (508)
Q Consensus 363 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~L~~n~~~ 418 (508)
.+..+ ++.....+|.++ +|+.+++.+|.+.......|.+++ .++.|++..+.+.
T Consensus 329 ~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 329 TIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp EECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 77544 554556667777 788888887777655566676664 6777877776654
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.60 E-value=5.9e-16 Score=162.26 Aligned_cols=219 Identities=21% Similarity=0.212 Sum_probs=110.4
Q ss_pred CCCCcEEecCCCcCCCCCCcCCcCCCCCcEEE-----cccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCC
Q 045861 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAIS-----LSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHN 94 (508)
Q Consensus 20 ~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~-----L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 94 (508)
-+.++.|++.++.+.. .+..+.....|+.+. ++.|.+. ..++.+..+..|++|+|++|.+. .+|..+.++++
T Consensus 172 ~~~~~~l~L~~n~~~~-~~~~~l~~l~Ls~~~i~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~ 248 (727)
T 4b8c_D 172 TPLTPKIELFANGKDE-ANQALLQHKKLSQYSIDEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDF 248 (727)
T ss_dssp ----------------------------------------------------CCCCCCEEECTTSCCS-CCCGGGGGCCS
T ss_pred CCccceEEeeCCCCCc-chhhHhhcCccCcccccCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCC
Confidence 3567778887777763 333332333333322 2223333 44667788888888888888877 66666667788
Q ss_pred CCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCC
Q 045861 95 LEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174 (508)
Q Consensus 95 L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~ 174 (508)
|++|+|++|.++ .+|..+.++++|++|+|++|.++ .+|..|+.+++|++|++++|.+..+
T Consensus 249 L~~L~Ls~N~l~-------------------~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~l 308 (727)
T 4b8c_D 249 LTRLYLNGNSLT-------------------ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSCFQLKYFYFFDNMVTTL 308 (727)
T ss_dssp CSCCBCTTSCCS-------------------CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGGTTCSEEECCSSCCCCC
T ss_pred CCEEEeeCCcCc-------------------ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCCCCCCEEECCCCCCCcc
Confidence 888887777766 67788888899999999999988 6788888889999999999988755
Q ss_pred CCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccC-------
Q 045861 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN------- 247 (508)
Q Consensus 175 ~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~------- 247 (508)
+ ..|..+++|+.|++++|.+++..|..+.........+++.+|.+.+.+|.. |..|+++.|
T Consensus 309 p------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n~~~~~~~ 376 (727)
T 4b8c_D 309 P------WEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTDGEPQREY 376 (727)
T ss_dssp C------SSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----------------------
T ss_pred C------hhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeeccccccccc
Confidence 4 337788889999999999888888777665434445678888887777653 445555555
Q ss_pred -ccccccCccccCCCCCCcEEccCCcC
Q 045861 248 -KLTGSIPISLGKLQKLQGLYLYKNKL 273 (508)
Q Consensus 248 -~~~~~~~~~l~~~~~L~~L~l~~n~l 273 (508)
.+.+..+..+..+..+....++.|.+
T Consensus 377 ~~l~~~~~~~~~~l~~~~~~~ls~Nil 403 (727)
T 4b8c_D 377 DSLQQSTEHLATDLAKRTFTVLSYNTL 403 (727)
T ss_dssp -------------------------CC
T ss_pred CCccccccchhhcccccceeeeecccc
Confidence 22222233334444455555555554
|
| >4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C} | Back alignment and structure |
|---|
Probab=99.58 E-value=5.8e-16 Score=162.34 Aligned_cols=180 Identities=25% Similarity=0.270 Sum_probs=86.7
Q ss_pred cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCc
Q 045861 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332 (508)
Q Consensus 253 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 332 (508)
.+..+..++.|+.|+|++|.+. .++..+..+++|++|+|++|.++ .+|..+..+++|+.|+|++|.++ ..|..+..+
T Consensus 216 ~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l 292 (727)
T 4b8c_D 216 PKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SLPAELGSC 292 (727)
T ss_dssp ------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SCCSSGGGG
T ss_pred ChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-ccChhhcCC
Confidence 3455566666666666666665 44444456666666666666665 55566666666666666666666 335556666
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCC-CCCEEECcCCcccccCcccccCCCCCCEEE
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLS-NLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (508)
++|++|+|++|.++ .+|..+..+++|+.|+|++|.+.+..|..+..+. .+..+++++|.+++.+|. .|+.|+
T Consensus 293 ~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~------~l~~l~ 365 (727)
T 4b8c_D 293 FQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPH------ERRFIE 365 (727)
T ss_dssp TTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCC------C-----
T ss_pred CCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCcc------ccceeE
Confidence 67777777777666 5555666677777777777777766666554321 122356666666654443 344555
Q ss_pred CCCC--------cccccCcccccCCCCCCEEeCCCCcce
Q 045861 412 LSNN--------SFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 412 L~~n--------~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+++| .+.+..+..+..++.+....+++|-+.
T Consensus 366 l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~ 404 (727)
T 4b8c_D 366 INTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLC 404 (727)
T ss_dssp ------------------------------------CCC
T ss_pred eecccccccccCCccccccchhhcccccceeeeeccccc
Confidence 5555 223233333444455555555666553
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.57 E-value=6.8e-15 Score=126.29 Aligned_cols=133 Identities=18% Similarity=0.173 Sum_probs=89.7
Q ss_pred CCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCE
Q 045861 306 GKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAF 385 (508)
Q Consensus 306 ~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~ 385 (508)
..+++|+.|++++|.+... +......++|++|++++|.+++. ..+..+++|++|++++|.+++..+..+..+++|++
T Consensus 16 ~~~~~L~~L~l~~n~l~~i-~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 92 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 92 (176)
T ss_dssp ECTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred CCcCCceEEEeeCCCCchh-HHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCE
Confidence 4455666666666666643 22222233677777777777643 45677777788888888777554455677888888
Q ss_pred EECcCCcccccCcc--cccCCCCCCEEECCCCcccccCcc---cccCCCCCCEEeCCCCcce
Q 045861 386 FSLAYNKLQGSIPE--SLGDLRSLEFLDLSNNSFSGFIPR---SFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 386 L~L~~n~l~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~l~~n~l~ 442 (508)
|++++|.++ .+|. .+..+++|+.|++++|.+....+. .+..+++|++|++++|...
T Consensus 93 L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 93 LILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp EECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred EECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 888888876 4444 677778888888888888743322 3777888888888888765
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.2e-12 Score=127.75 Aligned_cols=132 Identities=10% Similarity=0.111 Sum_probs=78.6
Q ss_pred hhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCC
Q 045861 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKV 358 (508)
Q Consensus 279 ~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~ 358 (508)
.+|..+..|+.+.+.++.. ......|..+++|+.+.+. +.+..+....|..+.+|+.+++..+ ++..-..+|.++.+
T Consensus 259 ~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~ 335 (394)
T 4gt6_A 259 HAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ 335 (394)
T ss_dssp TTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred ceeeecccccEEecccccc-eecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence 4555666666666654432 2444556666777777765 3455566667777777777777654 44345567777778
Q ss_pred CcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 359 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
|+.+.+..+ ++.....+|.+|++|+.+++.++... . .++....+|+.+.+..+.+
T Consensus 336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~-~--~~~~~~~~L~~i~i~~~~~ 390 (394)
T 4gt6_A 336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQ-W--NAISTDSGLQNLPVAPGSI 390 (394)
T ss_dssp CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHH-H--HTCBCCCCC----------
T ss_pred CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceee-h--hhhhccCCCCEEEeCCCCE
Confidence 888877654 55555677888888888888877554 2 4566677888887776654
|
| >1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-14 Score=123.23 Aligned_cols=130 Identities=22% Similarity=0.227 Sum_probs=84.2
Q ss_pred hCCCCCcEEecCCCcCCCCCCcCCcCC-CCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCC
Q 045861 18 QHLPRLQALDINNNHVTGPVPRNLWQC-QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLE 96 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 96 (508)
..+++|+.|++++|.++. ++. +..+ ++|++|++++|.+++. ..|..+++|++|++++|.+.+..+..+..+++|+
T Consensus 16 ~~~~~L~~L~l~~n~l~~-i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~ 91 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPV-IEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT 91 (176)
T ss_dssp ECTTSCEEEECTTSCCCS-CCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred CCcCCceEEEeeCCCCch-hHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence 456777777777777773 343 3343 3777777777777754 5677777777777777777744444456777777
Q ss_pred EeeCccccCCCCCCCCCCEEEccCCcccccCCc--cccCCCCCcEEEccCcccccccCh----hhcCCCCCCEEeCCCCc
Q 045861 97 YLVLENNNFDGPRHSNLERLYLERNNFSGTIPS--FIFNASKLSILGIRTNSFSGTIPS----TIANLRNLQWLDLSFNY 170 (508)
Q Consensus 97 ~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~--~~~~l~~L~~L~l~~~~i~~~~~~----~~~~l~~L~~L~l~~n~ 170 (508)
+|++++|.+. .++. .+..+++|++|++++|.+. ..|. .+..+++|+.|++++|.
T Consensus 92 ~L~L~~N~i~-------------------~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~ 151 (176)
T 1a9n_A 92 ELILTNNSLV-------------------ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVK 151 (176)
T ss_dssp EEECCSCCCC-------------------CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECC
T ss_pred EEECCCCcCC-------------------cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCC
Confidence 7777777664 3333 5566667777777777666 3343 25666666666666654
Q ss_pred C
Q 045861 171 L 171 (508)
Q Consensus 171 ~ 171 (508)
.
T Consensus 152 ~ 152 (176)
T 1a9n_A 152 L 152 (176)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.49 E-value=1.5e-13 Score=116.96 Aligned_cols=109 Identities=23% Similarity=0.230 Sum_probs=84.9
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCC
Q 045861 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414 (508)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 414 (508)
.+.+++++|.++ .+|..+ .+.+++|++++|.+++..+..|..+++|++|++++|++++..+..|..+++|++|+|++
T Consensus 11 ~~~l~~s~n~l~-~ip~~~--~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~ 87 (170)
T 3g39_A 11 GTTVDCSGKSLA-SVPTGI--PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND 87 (170)
T ss_dssp TTEEECTTSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEEeCCCCcC-ccCccC--CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence 467777777777 455444 36788888888888877777788888888888888888866666778888888888888
Q ss_pred CcccccCcccccCCCCCCEEeCCCCcceecCC
Q 045861 415 NSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIP 446 (508)
Q Consensus 415 n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p 446 (508)
|++++..+..|..+++|++|++++|++.+..+
T Consensus 88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 119 (170)
T 3g39_A 88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCACS 119 (170)
T ss_dssp SCCCCCCTTTTTTCTTCCEEECCSSCBCTTBG
T ss_pred CccCEeCHHHhcCCCCCCEEEeCCCCCCCCch
Confidence 88887777778888888888888888875444
|
| >3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D | Back alignment and structure |
|---|
Probab=99.48 E-value=1.7e-13 Score=116.66 Aligned_cols=102 Identities=28% Similarity=0.337 Sum_probs=83.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++|+++ .+|..+ .++|++|++++|.+++..+..|..+++|++|+|++|++++..+..|.++++|++|+|++|+
T Consensus 14 l~~s~n~l~-~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 14 VDCSGKSLA-SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EECTTSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 477888888 688766 4788888888888887777788888888888888888887777778888888888888888
Q ss_pred cccCCchhccCCCCCCEeeCccccCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFD 106 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (508)
+.+..+..|..+++|++|++++|.+.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 88666667888888888888888765
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.46 E-value=4.8e-16 Score=136.33 Aligned_cols=153 Identities=20% Similarity=0.203 Sum_probs=78.1
Q ss_pred CCCCCCcEEccCCcCccccch------hhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCc
Q 045861 259 KLQKLQGLYLYKNKLEGSIPD------SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSL 332 (508)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~------~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~ 332 (508)
....++.++++.+.+.+..+. .+..+++|++|++++|.+.+ ++ .+..+++|
T Consensus 16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L--------------------- 72 (198)
T 1ds9_A 16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENL--------------------- 72 (198)
T ss_dssp HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTC---------------------
T ss_pred hcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCC---------------------
Confidence 344555555555555444333 45555555555555555443 22 34444444
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCc-ccccCCCCCCEEE
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLD 411 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~ 411 (508)
++|++++|.++ .+|..+..+++|++|++++|++.+ ++ .+..+++|++|++++|.+++..+ ..+..+++|+.|+
T Consensus 73 ---~~L~l~~n~l~-~l~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~ 146 (198)
T 1ds9_A 73 ---RILSLGRNLIK-KIENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLL 146 (198)
T ss_dssp ---CEEEEEEEEEC-SCSSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEE
T ss_pred ---CEEECCCCCcc-cccchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEE
Confidence 44444444444 333344444555555555555553 23 35555666666666666653221 3455566666666
Q ss_pred CCCCcccccCcc----------cccCCCCCCEEeCCCCcce
Q 045861 412 LSNNSFSGFIPR----------SFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 412 L~~n~~~~~~~~----------~l~~l~~L~~L~l~~n~l~ 442 (508)
+++|.+.+..|. .+..+++|+.|+ +|+++
T Consensus 147 l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 147 LAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp ECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred ecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 666666544332 255666677665 55544
|
| >4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165} | Back alignment and structure |
|---|
Probab=99.46 E-value=2.1e-11 Score=118.79 Aligned_cols=149 Identities=9% Similarity=0.107 Sum_probs=107.2
Q ss_pred CCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECC
Q 045861 286 RLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLS 365 (508)
Q Consensus 286 ~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 365 (508)
.+..+.+.+ .+.......|..++.|+.+.+..+.. .+....|..+..|+.+.+.. .++.....+|.++.+|+.+++.
T Consensus 243 ~~~~~~ip~-~v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c~~L~~i~l~~-~i~~I~~~aF~~c~~L~~i~lp 319 (394)
T 4gt6_A 243 EDPAFKIPN-GVARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNCPALQDIEFSS-RITELPESVFAGCISLKSIDIP 319 (394)
T ss_dssp CCSEEECCT-TEEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTCTTCCEEECCT-TCCEECTTTTTTCTTCCEEECC
T ss_pred ccceEEcCC-cceEcccceeeecccccEEecccccc-eecCcccccccccccccCCC-cccccCceeecCCCCcCEEEeC
Confidence 445555443 23445667789999999999976543 46778899999999999974 4554667788999999999998
Q ss_pred CCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcce
Q 045861 366 RNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 366 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
.+ ++.....+|.+|.+|+.+.+..+ ++.+...+|.++++|+.+++.++.... .++..+.+|+.+.+..+.+.
T Consensus 320 ~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~~ 391 (394)
T 4gt6_A 320 EG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSID 391 (394)
T ss_dssp TT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC-----------
T ss_pred Cc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCEE
Confidence 65 66566778999999999999765 665667899999999999999986542 46778889999988777543
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.46 E-value=3.7e-13 Score=114.88 Aligned_cols=105 Identities=25% Similarity=0.263 Sum_probs=82.2
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 415 (508)
+.+++++|.++ .+|..+. +.|+.|++++|.+.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N 91 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN 91 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence 56777777776 4555443 67888888888888777777888888888888888888655566778888888888888
Q ss_pred cccccCcccccCCCCCCEEeCCCCccee
Q 045861 416 SFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 416 ~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
++++..+..|..+++|++|++++|++.+
T Consensus 92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c 119 (174)
T 2r9u_A 92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC 119 (174)
T ss_dssp CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred ccceeCHHHhccccCCCEEEeCCCCccc
Confidence 8887666678888888888888888874
|
| >2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus} | Back alignment and structure |
|---|
Probab=99.45 E-value=3.2e-13 Score=115.24 Aligned_cols=102 Identities=27% Similarity=0.302 Sum_probs=78.3
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
+++++|+++ ++|..+ .++|++|++++|.+++..|..|..+++|++|+|++|+++++.+..|.++++|++|+|++|+
T Consensus 17 l~~~~n~l~-~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 17 VNCQNIRLA-SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EECCSSCCS-SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCCC-ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 467778876 777766 3778888888888887777778888888888888888887666667788888888888888
Q ss_pred cccCCchhccCCCCCCEeeCccccCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFD 106 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (508)
+.+..+..|..+++|++|++++|.+.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred cceeCHHHhccccCCCEEEeCCCCcc
Confidence 87555555778888888888887765
|
| >1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A | Back alignment and structure |
|---|
Probab=99.43 E-value=2.2e-15 Score=132.16 Aligned_cols=155 Identities=23% Similarity=0.234 Sum_probs=100.6
Q ss_pred hhcCCCCcEEEcccCccccccCc------cccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccC
Q 045861 233 IGNLINLITMSLGINKLTGSIPI------SLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIG 306 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~------~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~ 306 (508)
+.....++.++++.+.+.+..+. .+..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+. .++..+.
T Consensus 14 ~~~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~ 90 (198)
T 1ds9_A 14 FEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDA 90 (198)
T ss_dssp HHHTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHH
T ss_pred HHhcccccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhh
Confidence 55667777778888887766665 88999999999999999986 56 8899999999999999986 4555555
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccc-hhhhcCCCCCE
Q 045861 307 KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIP-TVIGGLSNLAF 385 (508)
Q Consensus 307 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~~~~l~~L~~ 385 (508)
.+++|++|++++|.+.+.. .+..+++|++| ++++|.+.+..+ ..+..+++|++
T Consensus 91 ~~~~L~~L~L~~N~l~~l~--~~~~l~~L~~L------------------------~l~~N~i~~~~~~~~l~~l~~L~~ 144 (198)
T 1ds9_A 91 VADTLEELWISYNQIASLS--GIEKLVNLRVL------------------------YMSNNKITNWGEIDKLAALDKLED 144 (198)
T ss_dssp HHHHCSEEEEEEEECCCHH--HHHHHHHSSEE------------------------EESEEECCCHHHHHHHTTTTTCSE
T ss_pred cCCcCCEEECcCCcCCcCC--ccccCCCCCEE------------------------ECCCCcCCchhHHHHHhcCCCCCE
Confidence 5566666666666665431 24444444444 444444442211 24455555666
Q ss_pred EECcCCcccccCcc----------cccCCCCCCEEECCCCccc
Q 045861 386 FSLAYNKLQGSIPE----------SLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 386 L~L~~n~l~~~~~~----------~~~~l~~L~~L~L~~n~~~ 418 (508)
|++++|.+++..|. .+..+++|+.|| ++.++
T Consensus 145 L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 145 LLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp EEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGT
T ss_pred EEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccC
Confidence 66666655443332 245566666665 45444
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=2.6e-12 Score=123.07 Aligned_cols=132 Identities=17% Similarity=0.152 Sum_probs=104.0
Q ss_pred cEEEccCC-ccccccCccccCCCCCcEEECCC-CcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECC
Q 045861 336 LVFNFSSN-SLNGSLPLDIGNLKVVVGIDLSR-NNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLS 413 (508)
Q Consensus 336 ~~L~L~~n-~l~~~~~~~~~~l~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 413 (508)
..++++++ .++ .+|. +..+.+|+.|+|++ |.+.+..+..|.++++|+.|+|++|.+++..+..|.++++|+.|+|+
T Consensus 11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 35688888 888 5676 88899999999996 99997777889999999999999999998888889999999999999
Q ss_pred CCcccccCcccccCCCCCCEEeCCCCcceecCCCccc--cCCCCcccccCCCCCCCCCC
Q 045861 414 NNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGES--FANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 414 ~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~--~~~l~~l~l~~n~~~c~~~~ 470 (508)
+|++++..+..+..++ |+.|++.+|++.+..+.... ........+..+.+.|..|.
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 9999977777777766 99999999999854332211 11122344556678887664
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.33 E-value=4.9e-14 Score=135.59 Aligned_cols=93 Identities=22% Similarity=0.232 Sum_probs=48.4
Q ss_pred cCCcEEEccCCcccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc----Cccc
Q 045861 333 RDILVFNFSSNSLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS----IPES 400 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~~~~ 400 (508)
++|++|+|++|.++. .++..+...++|++|++++|.+++.. +..+...++|++|+|++|.+++. ++..
T Consensus 155 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~ 234 (372)
T 3un9_A 155 CQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARA 234 (372)
T ss_dssp CCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHH
T ss_pred CccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHH
Confidence 445555555555432 12223344555666666666655322 33445556666666666666542 2233
Q ss_pred ccCCCCCCEEECCCCcccccCcccc
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSF 425 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l 425 (508)
+...++|++|+|++|.+++.....+
T Consensus 235 L~~~~~L~~L~Ls~N~i~~~g~~~L 259 (372)
T 3un9_A 235 AREHPSLELLHLYFNELSSEGRQVL 259 (372)
T ss_dssp HHHCSSCCEEECTTSSCCHHHHHHH
T ss_pred HHhCCCCCEEeccCCCCCHHHHHHH
Confidence 3345666667777666665433333
|
| >3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.30 E-value=1.5e-13 Score=132.22 Aligned_cols=134 Identities=22% Similarity=0.199 Sum_probs=97.7
Q ss_pred CCCCEEEcCCCcccccCCc-cccCccCCcEEEccCCccccccCccc-----cCCCCCcEEECCCCcCCCc----cchhhh
Q 045861 309 SPLRNLLLHSNVLTYVIPS-TFLSLRDILVFNFSSNSLNGSLPLDI-----GNLKVVVGIDLSRNNLSDS----IPTVIG 378 (508)
Q Consensus 309 ~~L~~L~l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~-----~~l~~L~~L~l~~n~l~~~----~~~~~~ 378 (508)
++|++|++++|.+...... ....+++|++|+|++|.++......+ ...+.|++|++++|.+++. ++..+.
T Consensus 101 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~ 180 (372)
T 3un9_A 101 HALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLA 180 (372)
T ss_dssp SCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHH
T ss_pred CCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHh
Confidence 4566666666665433222 22344578888888888864433333 3467899999999999753 344557
Q ss_pred cCCCCCEEECcCCcccccC----cccccCCCCCCEEECCCCccccc----CcccccCCCCCCEEeCCCCcce
Q 045861 379 GLSNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFSGF----IPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 379 ~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
..++|++|+|++|.+++.. +..+...++|++|+|++|.+++. ++..+...++|++|++++|++.
T Consensus 181 ~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~ 252 (372)
T 3un9_A 181 GNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELS 252 (372)
T ss_dssp TCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCC
T ss_pred cCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCC
Confidence 8899999999999998533 56667788999999999999863 3345556799999999999986
|
| >2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 | Back alignment and structure |
|---|
Probab=99.29 E-value=7.1e-12 Score=120.09 Aligned_cols=105 Identities=16% Similarity=0.177 Sum_probs=81.6
Q ss_pred CEEEcCCC-cccccCCccccCccCCcEEEccC-CccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECc
Q 045861 312 RNLLLHSN-VLTYVIPSTFLSLRDILVFNFSS-NSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389 (508)
Q Consensus 312 ~~L~l~~n-~~~~~~~~~~~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (508)
..++.+++ .++.+ |. +..+.+|++|+|++ |.+++..+..|..+++|+.|+|++|++.+..+..|..+++|++|+|+
T Consensus 11 ~~v~~~~~n~l~~i-p~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~ 88 (347)
T 2ifg_A 11 SGLRCTRDGALDSL-HH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (347)
T ss_dssp SCEECCSSCCCTTT-TT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CEEEcCCCCCCCcc-CC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence 34677776 67754 44 77888888888886 88887777778888888888888888887777788888888888888
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+|.+++..+..|..++ |+.|+|++|.+..
T Consensus 89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c 117 (347)
T 2ifg_A 89 FNALESLSWKTVQGLS-LQELVLSGNPLHC 117 (347)
T ss_dssp SSCCSCCCSTTTCSCC-CCEEECCSSCCCC
T ss_pred CCccceeCHHHcccCC-ceEEEeeCCCccC
Confidence 8888865555565555 8888888888874
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.27 E-value=7.5e-10 Score=107.30 Aligned_cols=145 Identities=10% Similarity=0.080 Sum_probs=78.8
Q ss_pred hhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCc
Q 045861 281 LCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVV 360 (508)
Q Consensus 281 ~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 360 (508)
+..+..++.+.+..+ +.......+..+..|+.+.+..+ ++.+....|..+.+|+.+.+..+ +......+|..+.+|+
T Consensus 213 f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~ 289 (379)
T 4h09_A 213 FSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSNLT 289 (379)
T ss_dssp TTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTTCC
T ss_pred cccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccccc
Confidence 334444444444332 12233334445555555555443 34444455555566666655443 3323444556666666
Q ss_pred EEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCC
Q 045861 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLY 430 (508)
Q Consensus 361 ~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~ 430 (508)
.+.+.++.+......+|.++.+|+.+++..+ ++.+...+|.++++|+.+.+..+ ++.....+|.+++.
T Consensus 290 ~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 290 KVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp EEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 6666666665555566677777777777544 44455566777777777777544 44455556666543
|
| >4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.3e-09 Score=103.80 Aligned_cols=147 Identities=8% Similarity=0.014 Sum_probs=92.2
Q ss_pred ccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccC
Q 045861 255 ISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRD 334 (508)
Q Consensus 255 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~ 334 (508)
..+..+..++.+.+..+ +.......|..+..|+.+.+..+ ++......|..+.+|+.+.+..+ +.......|..+.+
T Consensus 211 ~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~~i~~~aF~~c~~ 287 (379)
T 4h09_A 211 YGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VKTVPYLLCSGCSN 287 (379)
T ss_dssp TTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CSEECTTTTTTCTT
T ss_pred cccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcccccccc-ceeccccccccccc
Confidence 34455556666666443 22233445666667777776554 33444556666777777777543 44455666777777
Q ss_pred CcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCC
Q 045861 335 ILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRS 406 (508)
Q Consensus 335 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~ 406 (508)
|+.+.+.++.++.....+|.++.+|+.+.+..+ ++.....+|.+|++|+++.+..+ ++.+...+|.++..
T Consensus 288 L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~~ 357 (379)
T 4h09_A 288 LTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSSI 357 (379)
T ss_dssp CCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSSC
T ss_pred cccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCCC
Confidence 777777777666555667777777777777654 55455567788888888888654 55455567766643
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.94 E-value=5.2e-10 Score=106.56 Aligned_cols=159 Identities=13% Similarity=0.143 Sum_probs=80.5
Q ss_pred cchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCcccc--CccCCcEEEccC--Cccccc----
Q 045861 277 IPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFL--SLRDILVFNFSS--NSLNGS---- 348 (508)
Q Consensus 277 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~--~~~~L~~L~L~~--n~l~~~---- 348 (508)
+...+..+|+|+.|.+++|.-. .++. + .+++|+.|++..|.+.......+. .+++|+.|+|+. +...+.
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~ 240 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMN 240 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGG
T ss_pred HHHHHhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHH
Confidence 3345566777777777766211 1222 2 256777777776665433222222 466777776642 111100
Q ss_pred -cCccc--cCCCCCcEEECCCCcCCCccchhhh---cCCCCCEEECcCCcccccC----cccccCCCCCCEEECCCCccc
Q 045861 349 -LPLDI--GNLKVVVGIDLSRNNLSDSIPTVIG---GLSNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 349 -~~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~---~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+...+ ..+++|+.|++.+|.+.+..+..+. .+++|++|+|+.|.+++.. +..+..+++|+.|++++|.++
T Consensus 241 ~l~~~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~ 320 (362)
T 2ra8_A 241 VFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLS 320 (362)
T ss_dssp GTGGGSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCC
T ss_pred HHHHHHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCC
Confidence 11111 2356666666666666543333332 3556666666666665432 222334566666666666665
Q ss_pred ccCcccccC-CCCCCEEeCCCCc
Q 045861 419 GFIPRSFEK-LLYLEYLNLSFNR 440 (508)
Q Consensus 419 ~~~~~~l~~-l~~L~~L~l~~n~ 440 (508)
......+.. + ...+++++++
T Consensus 321 d~~~~~l~~al--g~~~~~~~~~ 341 (362)
T 2ra8_A 321 DEMKKELQKSL--PMKIDVSDSQ 341 (362)
T ss_dssp HHHHHHHHHHC--CSEEECCSBC
T ss_pred HHHHHHHHHHc--CCEEEecCCc
Confidence 433333332 2 2445565555
|
| >2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.86 E-value=3.4e-09 Score=100.94 Aligned_cols=156 Identities=18% Similarity=0.198 Sum_probs=84.7
Q ss_pred ccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCccc--CCCCCCCEEEcCCC--ccccc-----CCc
Q 045861 257 LGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACI--GKLSPLRNLLLHSN--VLTYV-----IPS 327 (508)
Q Consensus 257 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~--~~~~~L~~L~l~~n--~~~~~-----~~~ 327 (508)
+..+|+|+.|.++++.-. .++. + ..++|+.|++..|.+.......+ ..+|+|+.|+++.+ ...+. ...
T Consensus 168 l~~~P~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~ 244 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRP 244 (362)
T ss_dssp HHTCTTCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGG
T ss_pred HhcCCCCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHH
Confidence 344455555555554211 1111 1 24556666665555432222222 24566666665421 11000 001
Q ss_pred cc--cCccCCcEEEccCCccccccCccc---cCCCCCcEEECCCCcCCCccchh----hhcCCCCCEEECcCCcccccCc
Q 045861 328 TF--LSLRDILVFNFSSNSLNGSLPLDI---GNLKVVVGIDLSRNNLSDSIPTV----IGGLSNLAFFSLAYNKLQGSIP 398 (508)
Q Consensus 328 ~~--~~~~~L~~L~L~~n~l~~~~~~~~---~~l~~L~~L~l~~n~l~~~~~~~----~~~l~~L~~L~L~~n~l~~~~~ 398 (508)
.+ ..+++|++|++.+|.+....+..+ ..++.|++|+++.|.+.+..+.. +..+++|+.|++++|.+++...
T Consensus 245 ~l~~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~ 324 (362)
T 2ra8_A 245 LFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMK 324 (362)
T ss_dssp GSCTTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHH
T ss_pred HHhcCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHH
Confidence 11 246788888888777764322222 24778999999988888644333 3457899999999998876544
Q ss_pred ccccCCCCCCEEECCCCc
Q 045861 399 ESLGDLRSLEFLDLSNNS 416 (508)
Q Consensus 399 ~~~~~l~~L~~L~L~~n~ 416 (508)
..+... -...+++++++
T Consensus 325 ~~l~~a-lg~~~~~~~~~ 341 (362)
T 2ra8_A 325 KELQKS-LPMKIDVSDSQ 341 (362)
T ss_dssp HHHHHH-CCSEEECCSBC
T ss_pred HHHHHH-cCCEEEecCCc
Confidence 444421 14668888887
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.66 E-value=1.4e-08 Score=87.24 Aligned_cols=114 Identities=16% Similarity=0.134 Sum_probs=70.6
Q ss_pred ccCccCCcEEEccCC-cccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc---
Q 045861 329 FLSLRDILVFNFSSN-SLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS--- 396 (508)
Q Consensus 329 ~~~~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~--- 396 (508)
+...++|++|+|++| .+.. .+...+...+.|++|++++|.+.+.. ...+...++|++|+|++|.+++.
T Consensus 32 l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~ 111 (185)
T 1io0_A 32 QNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGIL 111 (185)
T ss_dssp HTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHH
T ss_pred HhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHH
Confidence 334455555555555 4432 12334455566777777777776432 33445567788888888877643
Q ss_pred -CcccccCCCCCCEEEC--CCCccccc----CcccccCCCCCCEEeCCCCcce
Q 045861 397 -IPESLGDLRSLEFLDL--SNNSFSGF----IPRSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 397 -~~~~~~~l~~L~~L~L--~~n~~~~~----~~~~l~~l~~L~~L~l~~n~l~ 442 (508)
+..++...++|++|+| ++|.+... +.+.+...++|++|++++|.+.
T Consensus 112 ~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 112 ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 3455566677888888 77877653 3344555677888888888764
|
| >1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=98.53 E-value=3.2e-08 Score=84.94 Aligned_cols=88 Identities=13% Similarity=0.103 Sum_probs=51.1
Q ss_pred CccCCcEEEccCCccccc----cCccccCCCCCcEEECCCCcCCCc----cchhhhcCCCCCEEEC--cCCccccc----
Q 045861 331 SLRDILVFNFSSNSLNGS----LPLDIGNLKVVVGIDLSRNNLSDS----IPTVIGGLSNLAFFSL--AYNKLQGS---- 396 (508)
Q Consensus 331 ~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L--~~n~l~~~---- 396 (508)
..++|++|+|++|.+... +...+...+.|++|++++|.+.+. +..++...++|++|++ ++|.+++.
T Consensus 63 ~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~ 142 (185)
T 1io0_A 63 TNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEME 142 (185)
T ss_dssp TCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHHH
T ss_pred hCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHHH
Confidence 344455555555554321 233344455677777777776643 2344555667777777 66777643
Q ss_pred CcccccCCCCCCEEECCCCccc
Q 045861 397 IPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 397 ~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
+...+...++|++|++++|.+.
T Consensus 143 l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 143 IANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHhCCCcCEEeccCCCCC
Confidence 2344455577778888777765
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.42 E-value=6.5e-08 Score=80.78 Aligned_cols=83 Identities=17% Similarity=0.139 Sum_probs=42.8
Q ss_pred CCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc-ccccCcccccCC----CCCCEEECCCCc-ccccCcccccCCCCC
Q 045861 358 VVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDL----RSLEFLDLSNNS-FSGFIPRSFEKLLYL 431 (508)
Q Consensus 358 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-~~~~~~~~l~~l~~L 431 (508)
.|+.||+++|.+++.....+.++++|+.|+|++|. +++..-..+..+ ++|++|+|++|. +++..-..+..+++|
T Consensus 62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L 141 (176)
T 3e4g_A 62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL 141 (176)
T ss_dssp CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence 45555555555554444445555556666665553 444333334332 246666666653 554333444555666
Q ss_pred CEEeCCCCc
Q 045861 432 EYLNLSFNR 440 (508)
Q Consensus 432 ~~L~l~~n~ 440 (508)
++|++++|+
T Consensus 142 ~~L~L~~c~ 150 (176)
T 3e4g_A 142 KYLFLSDLP 150 (176)
T ss_dssp CEEEEESCT
T ss_pred CEEECCCCC
Confidence 666666654
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.5e-07 Score=84.89 Aligned_cols=62 Identities=26% Similarity=0.430 Sum_probs=27.5
Q ss_pred CCCCcEEECCCCcCCC--ccchhhhcCCCCCEEECcCCcccccCcccccCCC--CCCEEECCCCcccc
Q 045861 356 LKVVVGIDLSRNNLSD--SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR--SLEFLDLSNNSFSG 419 (508)
Q Consensus 356 l~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~~~~ 419 (508)
++.|++|+|++|.+.+ .++..+..+++|+.|+|++|.+++. ..+..+. +|++|+|++|.+.+
T Consensus 169 l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~ 234 (267)
T 3rw6_A 169 IPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCD 234 (267)
T ss_dssp CTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGG
T ss_pred CCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCcc
Confidence 4445555555555543 2223344455555555555555432 1122222 45555555555443
|
| >3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A | Back alignment and structure |
|---|
Probab=98.29 E-value=2.1e-07 Score=83.91 Aligned_cols=80 Identities=21% Similarity=0.317 Sum_probs=48.8
Q ss_pred hCCCCCcEEecCCCcCCC--CCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCC--CCCeEEccCCccccCCc-------
Q 045861 18 QHLPRLQALDINNNHVTG--PVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLT--SARALLLGNNNLIGEIP------- 86 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~--~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~--~L~~L~L~~n~l~~~~~------- 86 (508)
.++++|+.|+|++|.+++ .++..+..+++|++|+|++|++++. ..+..+. +|++|+|++|.+.+..|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~ 244 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS 244 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence 456777777777777765 2334455677777777777777644 2233333 67777777777664333
Q ss_pred hhccCCCCCCEee
Q 045861 87 HEIGNLHNLEYLV 99 (508)
Q Consensus 87 ~~~~~l~~L~~L~ 99 (508)
..+..+++|+.||
T Consensus 245 ~il~~~P~L~~LD 257 (267)
T 3rw6_A 245 AIRERFPKLLRLD 257 (267)
T ss_dssp HHHHHCTTCCEES
T ss_pred HHHHHCcccCeEC
Confidence 2355666666665
|
| >3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A | Back alignment and structure |
|---|
Probab=98.25 E-value=4.5e-07 Score=75.67 Aligned_cols=84 Identities=15% Similarity=0.142 Sum_probs=57.9
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCCc-CCCccchhhhcC----CCCCEEECcCCc-ccccCcccccCCCC
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNN-LSDSIPTVIGGL----SNLAFFSLAYNK-LQGSIPESLGDLRS 406 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~~~~~~~l~~ 406 (508)
..|++|++++|.++..--..+..+++|+.|+|++|. +++.....+..+ ++|++|+|++|. +|+.....+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 356777777776665444456677777777777774 665555555553 468888888874 77665566677788
Q ss_pred CCEEECCCCc
Q 045861 407 LEFLDLSNNS 416 (508)
Q Consensus 407 L~~L~L~~n~ 416 (508)
|+.|++++|.
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 8888888885
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=97.85 E-value=2.5e-05 Score=62.20 Aligned_cols=35 Identities=23% Similarity=0.250 Sum_probs=17.4
Q ss_pred CCCEEECCCCcccccCcccccCCCCCCEEeCCCCc
Q 045861 406 SLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNR 440 (508)
Q Consensus 406 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~ 440 (508)
+|+.|+|++|+|+...++.|..+++|+.|+|++|+
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP 66 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANP 66 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSC
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCC
Confidence 45555555555554444445555555544444333
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.72 E-value=3.2e-05 Score=65.76 Aligned_cols=111 Identities=19% Similarity=0.133 Sum_probs=69.4
Q ss_pred CccCCcEEEccCC-cccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc----C
Q 045861 331 SLRDILVFNFSSN-SLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS----I 397 (508)
Q Consensus 331 ~~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~ 397 (508)
.-+.|++|+|+++ .+.. .+..++..-..|+.|+|++|.+.+.. .+++..-+.|++|+|++|.|++. +
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~al 118 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARL 118 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHH
Confidence 3455666666654 4432 23444556667777777777777433 34455667788888888887743 3
Q ss_pred cccccCCCCCCEEECCCC---cccc----cCcccccCCCCCCEEeCCCCcc
Q 045861 398 PESLGDLRSLEFLDLSNN---SFSG----FIPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~~n---~~~~----~~~~~l~~l~~L~~L~l~~n~l 441 (508)
.+++...+.|++|+|++| .+.. .+.+.+..-+.|+.|+++.|..
T Consensus 119 a~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 119 LRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence 355566677888888765 3332 2334556667888888877654
|
| >1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1 | Back alignment and structure |
|---|
Probab=97.19 E-value=0.00033 Score=59.56 Aligned_cols=92 Identities=15% Similarity=0.073 Sum_probs=70.6
Q ss_pred CccccCCCCCcEEECCCC-cCCCc----cchhhhcCCCCCEEECcCCcccccC----cccccCCCCCCEEECCCCccccc
Q 045861 350 PLDIGNLKVVVGIDLSRN-NLSDS----IPTVIGGLSNLAFFSLAYNKLQGSI----PESLGDLRSLEFLDLSNNSFSGF 420 (508)
Q Consensus 350 ~~~~~~l~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~ 420 (508)
...+..-+.|++|+|++| .+.+. +.+++..-+.|++|+|++|.+.+.. .+.+...+.|++|+|++|.|...
T Consensus 34 ~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~ 113 (197)
T 1pgv_A 34 NRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPE 113 (197)
T ss_dssp HHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHH
T ss_pred HHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHH
Confidence 334566789999999996 88754 3455667789999999999998543 34455678999999999999863
Q ss_pred ----CcccccCCCCCCEEeCCCCcc
Q 045861 421 ----IPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 421 ----~~~~l~~l~~L~~L~l~~n~l 441 (508)
+.+++..-+.|++|++++|..
T Consensus 114 Ga~ala~aL~~N~tL~~L~L~n~~~ 138 (197)
T 1pgv_A 114 LLARLLRSTLVTQSIVEFKADNQRQ 138 (197)
T ss_dssp HHHHHHHHTTTTCCCSEEECCCCSS
T ss_pred HHHHHHHHHhhCCceeEEECCCCcC
Confidence 345566678899999997643
|
| >3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A* | Back alignment and structure |
|---|
Probab=96.70 E-value=0.0021 Score=50.89 Aligned_cols=57 Identities=25% Similarity=0.331 Sum_probs=44.1
Q ss_pred cEEecCCCcCC-CCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc
Q 045861 24 QALDINNNHVT-GPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82 (508)
Q Consensus 24 ~~L~l~~~~~~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 82 (508)
+.++.+++.++ ..+|..+ .++|++|+|++|+|+.+.+..|..+++|++|+|++|.+.
T Consensus 11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 46788888876 2455433 356899999999998777778888999999999988765
|
| >2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus} | Back alignment and structure |
|---|
Probab=84.31 E-value=2.5 Score=31.13 Aligned_cols=47 Identities=9% Similarity=0.114 Sum_probs=21.8
Q ss_pred CCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEccc
Q 045861 6 NTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSH 54 (508)
Q Consensus 6 n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~ 54 (508)
.+++ .|....|.+|.+|+.+.+-.+- +.+-..+|.+|.+|+.+.+.+
T Consensus 6 ~~vt-~I~~~aF~~c~~L~~i~iP~~v-~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 6 EPVV-GMDKSLFAGNTVIREITVQPNI-GLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCCC-SSCSCTTTTCTTCCCEEECTTS-SCCCTTSSTTCTTCCCEEECC
T ss_pred CccC-EecHHHhcCCCCCcEEEcCCch-heEcHHHHhccCCccEEEEcC
Confidence 3444 4444555555555555554432 223334455555555555443
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 508 | ||||
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 3e-23 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-15 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 8e-10 | |
| d2omza2 | 384 | c.10.2.1 (A:33-416) Internalin A {Listeria monocyt | 1e-06 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 2e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 3e-18 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 7e-14 | |
| d1xkua_ | 305 | c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99 | 4e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 7e-17 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-15 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-14 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 6e-13 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 8e-12 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 3e-10 | |
| d1ogqa_ | 313 | c.10.2.8 (A:) Polygalacturonase inhibiting protein | 2e-06 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 9e-17 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 5e-14 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 4e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-13 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 2e-11 | |
| d1ozna_ | 284 | c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept | 8e-09 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 3e-10 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-07 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 2e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 5e-05 | |
| d1p9ag_ | 266 | c.10.2.7 (G:) von Willebrand factor binding domain | 0.002 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-07 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 3e-05 | |
| d2astb2 | 284 | c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1 | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-07 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-06 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 4e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 5e-05 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 1e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 2e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 3e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 8e-04 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.001 | |
| d1z7xw1 | 460 | c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human ( | 0.002 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 6e-07 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 4e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 5e-05 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 2e-04 | |
| d1h6ua2 | 227 | c.10.2.1 (A:36-262) Internalin H {Listeria monocyt | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-06 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 4e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 6e-05 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 1e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 2e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 3e-04 | |
| d1jl5a_ | 353 | c.10.2.6 (A:) Leucine rich effector protein YopM { | 7e-04 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 3e-06 | |
| d2ca6a1 | 344 | c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom | 0.003 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 3e-06 | |
| d1h6ta2 | 210 | c.10.2.1 (A:31-240) Internalin B {Listeria monocyt | 7e-05 | |
| d1w8aa_ | 192 | c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga | 8e-06 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 2e-05 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 1e-04 | |
| d2ifga3 | 156 | c.10.2.7 (A:36-191) High affinity nerve growth fac | 0.002 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 5e-05 | |
| d1dcea3 | 124 | c.10.2.2 (A:444-567) Rab geranylgeranyltransferase | 8e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 5e-05 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 7e-04 | |
| d2omxa2 | 199 | c.10.2.1 (A:37-235) Internalin B {Listeria monocyt | 0.004 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 6e-05 | |
| d1xwdc1 | 242 | c.10.2.7 (C:18-259) Follicle-stimulating hormone r | 0.001 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 2e-04 | |
| d1a9na_ | 162 | c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom | 0.004 | |
| d1m9la_ | 198 | c.10.3.1 (A:) Outer arm dynein light chain 1 {Gree | 8e-04 |
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 99.3 bits (246), Expect = 3e-23
Identities = 72/384 (18%), Positives = 135/384 (35%), Gaps = 31/384 (8%)
Query: 67 NLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN---FDGPRH-SNLERLYLERNN 122
L +LG N+ + +L + L + DG + +NL ++ N
Sbjct: 20 ALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSIDGVEYLNNLTQINFSNNQ 77
Query: 123 FSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ-------WLDLSFNYLTSST 175
+ P + N +KL + + N + P LT+
Sbjct: 78 LTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 135
Query: 176 SELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGN 235
+++ + L + G + + L+ + +
Sbjct: 136 RLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLAK 195
Query: 236 LINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDN 295
L NL ++ N+++ P+ + L L L N+L+ +L +L L +L +N
Sbjct: 196 LTNLESLIATNNQISDITPLGILT--NLDELSLNGNQLKD--IGTLASLTNLTDLDLANN 251
Query: 296 KLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGN 355
++ P + L+ L L L +N ++ + P L+ L N + I N
Sbjct: 252 QISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDIS----PISN 305
Query: 356 LKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
LK + + L NN+SD P + L+ L A NK+ SL +L ++ +L +N
Sbjct: 306 LKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361
Query: 416 SFSGFIPRSFEKLLYLEYLNLSFN 439
S P L + L L+
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 76.2 bits (186), Expect = 1e-15
Identities = 82/396 (20%), Positives = 144/396 (36%), Gaps = 55/396 (13%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
L ++ L + + + L I+ S+NQLT + P + NLT +
Sbjct: 43 LDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDI---LM 95
Query: 80 NLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSI 139
N + NN L R S S I S L+
Sbjct: 96 NNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRLELSSNTISDISALSGLTS 155
Query: 140 LGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQ 199
L + T +ANL L+ LD+S N ++ + NL+ + T NQ
Sbjct: 156 LQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVL-------AKLTNLESLIATNNQ 208
Query: 200 LHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGK 259
+ I P + T+L+ + + + + +L NL + L N+++ P L
Sbjct: 209 ISDITPLGI---LTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSG 261
Query: 260 LQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSN 319
L KL L L N++ P L L L L+ +N+L + I L L L L+ N
Sbjct: 262 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE--DISPISNLKNLTYLTLYFN 317
Query: 320 VLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGG 379
++ + P + +L + + + N +SD + +
Sbjct: 318 NISDISP--------------------------VSSLTKLQRLFFANNKVSD--VSSLAN 349
Query: 380 LSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415
L+N+ + S +N++ P L +L + L L++
Sbjct: 350 LTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 58.5 bits (140), Expect = 8e-10
Identities = 68/366 (18%), Positives = 118/366 (32%), Gaps = 55/366 (15%)
Query: 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKV 192
++ + + + T+ + +L + L + S + + NL
Sbjct: 20 ALAEKMKTVLGKTNVTDTV--SQTDLDQVTTLQADRLGIKS-------IDGVEYLNNLTQ 70
Query: 193 IDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGS 252
I+ + NQL I P + NL+ ++ + + NL L + I +
Sbjct: 71 INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPL 128
Query: 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312
++ +L + + L L LQ + + L+ L
Sbjct: 129 KNLTNLNRLELSSNTISD----------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLE 178
Query: 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG-NLKVVVGIDLSRNNLSD 371
L + SN ++ + L+ + L ++N ++ PL I NL + L+ N L D
Sbjct: 179 RLDISSNKVSDISVLAKLTNLESL--IATNNQISDITPLGILTNLDE---LSLNGNQLKD 233
Query: 372 SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIP--------- 422
+ L+NL LA N++ P L L L L L N S P
Sbjct: 234 --IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTN 289
Query: 423 -----------RSFEKLLYLEYLNLSFNRLKGEIPSGE----SFANFSDNSFMGNSFLCG 467
L L YL L FN + P F++N S L
Sbjct: 290 LELNENQLEDISPISNLKNLTYLTLYFNNISDISPVSSLTKLQRLFFANNKVSDVSSLAN 349
Query: 468 SPNLQV 473
N+
Sbjct: 350 LTNINW 355
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Score = 48.5 bits (114), Expect = 1e-06
Identities = 21/79 (26%), Positives = 33/79 (41%), Gaps = 7/79 (8%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ N ++ P L +LQ L NN V+ +L + +S HNQ++ L
Sbjct: 312 LTLYFNNISDISP---VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQISDL 366
Query: 61 IPRDIGNLTSARALLLGNN 79
P + NLT L L +
Sbjct: 367 TP--LANLTRITQLGLNDQ 383
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.5 bits (205), Expect = 2e-18
Identities = 52/261 (19%), Positives = 96/261 (36%), Gaps = 12/261 (4%)
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN 247
+ ++DL N++ I NL +L + + + S P L+ L + L N
Sbjct: 31 PDTALLDLQNNKITEIKDGDFKNL-KNLHTLILINNKISKISPGAFAPLVKLERLYLSKN 89
Query: 248 KLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+L LQ+L+ K+ S+ + L N +VEL K G
Sbjct: 90 QLKELPEKMPKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQG 148
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367
+ L + + +T + SL ++ + N + + L + + LS N
Sbjct: 149 MKKLSYIRIADTNITTIPQGLPPSLTEL---HLDGNKITKVDAASLKGLNNLAKLGLSFN 205
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF-- 425
++S + +L L NKL +P L D + ++ + L NN+ S F
Sbjct: 206 SISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 264
Query: 426 ----EKLLYLEYLNLSFNRLK 442
K ++L N ++
Sbjct: 265 PGYNTKKASYSGVSLFSNPVQ 285
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 83.2 bits (204), Expect = 3e-18
Identities = 59/292 (20%), Positives = 105/292 (35%), Gaps = 35/292 (11%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG-- 107
+ L +N++T + D NL + L+L NN + P L LE L L N
Sbjct: 36 LDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95
Query: 108 PRHSNLERLYLERNNFSGTIPSFIFNASKLSI---LGIRTNSFSGTIPSTIANLRNLQWL 164
+ + N + +FN I LG SG ++ L ++
Sbjct: 96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155
Query: 165 DLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCR 224
++ +T+ L +L + L GN++ + +S+ L +L + + +
Sbjct: 156 RIADTNITTIPQGL--------PPSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNS 206
Query: 225 RSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNL 284
S + N +L + L NKL +P L + +Q +YL+ N + + C
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP- 264
Query: 285 GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTY--VIPSTFLSLRD 334
P K + + L SN + Y + PSTF +
Sbjct: 265 -----------------PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYV 299
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 70.1 bits (170), Expect = 7e-14
Identities = 52/256 (20%), Positives = 87/256 (33%), Gaps = 8/256 (3%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
C G ++P+++ + + L NK+T L+ L L L NK+ P
Sbjct: 16 QCSDLGLEKVPKDLPP--DTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPG 73
Query: 280 SLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFN 339
+ L +L L N+L L LR + + + L+ ++
Sbjct: 74 AFAPLVKLERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFN-GLNQMIVVELG 132
Query: 340 FSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPE 399
+ +G +K + I ++ N++ G +L L NK+
Sbjct: 133 TNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQ---GLPPSLTELHLDGNKITKVDAA 189
Query: 400 SLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSF 459
SL L +L L LS NS S S +L L+L+ N+L
Sbjct: 190 SLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYL 249
Query: 460 MGNSFLCGSPNLQVPP 475
N+ N PP
Sbjct: 250 HNNNISAIGSNDFCPP 265
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Score = 58.9 bits (141), Expect = 4e-10
Identities = 41/249 (16%), Positives = 80/249 (32%), Gaps = 51/249 (20%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
D NN +T + D ++L L L + NN ++ P +L + LS NQL L
Sbjct: 37 DLQNNKITE-IKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKELP 95
Query: 62 PR-----------------------DIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYL 98
+ + N L G + L Y+
Sbjct: 96 EKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYI 155
Query: 99 VLENNNF---DGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSG------ 149
+ + N +L L+L+ N + + + + L+ LG+ NS S
Sbjct: 156 RIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSL 215
Query: 150 -----------------TIPSTIANLRNLQWLDLSFNYLTS-STSELSFLSSLRNCRNLK 191
+P +A+ + +Q + L N +++ +++ +
Sbjct: 216 ANTPHLRELHLNNNKLVKVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYS 275
Query: 192 VIDLTGNQL 200
+ L N +
Sbjct: 276 GVSLFSNPV 284
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 79.4 bits (194), Expect = 7e-17
Identities = 74/289 (25%), Positives = 118/289 (40%), Gaps = 25/289 (8%)
Query: 182 SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLIT 241
+ + +DL+G L P IP + NL L
Sbjct: 44 DTDTQTYRVNNLDLSGLNLPKPYP-----------------------IPSSLANLPYLNF 80
Query: 242 MSL-GINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGS 300
+ + GIN L G IP ++ KL +L LY+ + G+IPD L + LV L F N L G+
Sbjct: 81 LYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGT 140
Query: 301 IPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVV 360
+P I L L + N ++ IP ++ L + + + + + + +
Sbjct: 141 LPPSISSLPNLVGITFDGNRISGAIPDSY-GSFSKLFTSMTISRNRLTGKIPPTFANLNL 199
Query: 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGF 420
N+ + +V+ G +G ++L LDL NN G
Sbjct: 200 AFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGT 259
Query: 421 IPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469
+P+ +L +L LN+SFN L GEIP G + F +++ N LCGSP
Sbjct: 260 LPQGLTQLKFLHSLNVSFNNLCGEIPQGGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 74.8 bits (182), Expect = 2e-15
Identities = 59/273 (21%), Positives = 103/273 (37%), Gaps = 5/273 (1%)
Query: 145 NSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL 204
++ G + T + LDLS L SSL N L + + G
Sbjct: 36 RTWLGVLCDTDTQTYRVNNLDLSGLNLPKP---YPIPSSLANLPYLNFLYIGGINNLVGP 92
Query: 205 PSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQ 264
T L Y+Y+ + SG IP+ + + L+T+ N L+G++P S+ L L
Sbjct: 93 IPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLV 152
Query: 265 GLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYV 324
G+ N++ G+IPDS + +L L + S +
Sbjct: 153 GITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVD-LSRNMLEG 211
Query: 325 IPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLA 384
S + + +G K + G+DL N + ++P + L L
Sbjct: 212 DASVLFGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLH 271
Query: 385 FFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417
++++N L G IP+ G+L+ + +NN
Sbjct: 272 SLNVSFNNLCGEIPQ-GGNLQRFDVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 70.6 bits (171), Expect = 6e-14
Identities = 60/262 (22%), Positives = 91/262 (34%), Gaps = 27/262 (10%)
Query: 47 LIAISLSHNQLTGL--IPRDIGNLTSARALLL-GNNNLIGEIPHEIGNLHNLEYLVLENN 103
+ + LS L IP + NL L + G NNL+G IP I L L YL + +
Sbjct: 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHT 111
Query: 104 NFDGPR------HSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIAN 157
N G L L N SGT+P I + L + N SG IP + +
Sbjct: 112 NVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGS 171
Query: 158 LRNLQWLDLSFN-----------------YLTSSTSELSFLSSLRNCRNLKVIDLTGNQL 200
L ++ S + L +S+ + + +
Sbjct: 172 FSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKN 231
Query: 201 HGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKL 260
LS +L + + R G +P+ + L L ++++ N L G IP G L
Sbjct: 232 SLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNL 290
Query: 261 QKLQGLYLYKNKLEGSIPDSLC 282
Q+ NK P C
Sbjct: 291 QRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 67.5 bits (163), Expect = 6e-13
Identities = 63/275 (22%), Positives = 98/275 (35%), Gaps = 29/275 (10%)
Query: 58 TGLIPRDIGNLTSARALLLGNNNLIG--EIPHEIGNLHNLEYLVLENNNF-------DGP 108
G++ L L NL IP + NL L +L + N
Sbjct: 39 LGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIA 98
Query: 109 RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSF 168
+ + L LY+ N SG IP F+ L L N+ SGT+P +I++L NL +
Sbjct: 99 KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158
Query: 169 NYLTSS-TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEY---------- 217
N ++ + S L + LTG ++ + S
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218
Query: 218 ------IYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKN 271
++G NL + L N++ G++P L +L+ L L + N
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFN 278
Query: 272 KLEGSIPDSLCNLGRLVELQFYDNKLF--GSIPAC 304
L G IP NL R + +NK +PAC
Sbjct: 279 NLCGEIP-QGGNLQRFDVSAYANNKCLCGSPLPAC 312
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 64.0 bits (154), Expect = 8e-12
Identities = 54/269 (20%), Positives = 102/269 (37%), Gaps = 11/269 (4%)
Query: 133 NASKLSILGIRTNSFSG--TIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNL 190
+++ L + + IPS++ANL L +L + ++ L
Sbjct: 48 QTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGP----IPPAIAKLTQL 103
Query: 191 KVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLT 250
+ +T + G + +L + Y SG +P I +L NL+ ++ N+++
Sbjct: 104 HYLYITHTNVSGA-IPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRIS 162
Query: 251 GSIPISLGKLQKLQG-LYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLS 309
G+IP S G KL + + +N+L G IP + NL + +
Sbjct: 163 GAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD-- 220
Query: 310 PLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369
+ + +++ + +N + G+LP + LK + +++S NNL
Sbjct: 221 KNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280
Query: 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
IP G L + A NK P
Sbjct: 281 CGEIPQ-GGNLQRFDVSAYANNKCLCGSP 308
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 59.4 bits (142), Expect = 3e-10
Identities = 35/190 (18%), Positives = 69/190 (36%), Gaps = 11/190 (5%)
Query: 16 MCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALL 75
+ L LD + N ++G +P ++ L+ I+ N+++G IP G+ + +
Sbjct: 120 FLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSM 179
Query: 76 LGNNNLI-----GEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSF 130
+ N + + +L +LE + + N
Sbjct: 180 TISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK 239
Query: 131 IFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNL 190
+ + L+ L +R N GT+P + L+ L L++SFN L + N +
Sbjct: 240 VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE------IPQGGNLQRF 293
Query: 191 KVIDLTGNQL 200
V N+
Sbjct: 294 DVSAYANNKC 303
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Score = 47.8 bits (112), Expect = 2e-06
Identities = 16/62 (25%), Positives = 31/62 (50%), Gaps = 2/62 (3%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D NN + G+LP + Q L L +L+++ N++ G +P Q + ++N+
Sbjct: 249 LDLRNNRIYGTLPQGLTQ-LKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCG 306
Query: 61 IP 62
P
Sbjct: 307 SP 308
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 78.3 bits (191), Expect = 9e-17
Identities = 48/256 (18%), Positives = 80/256 (31%), Gaps = 4/256 (1%)
Query: 188 RNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGIN 247
+ I L GN++ + +S G +
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 248 KLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+L P + L +L L+L + L+ P L L L DN L
Sbjct: 92 QLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRD 151
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367
L L +L LH N ++ V F L + N + P +L ++ + L N
Sbjct: 152 LGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFAN 211
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEK 427
NLS + L L + L N + L+ S++ +P+
Sbjct: 212 NLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRLAG 270
Query: 428 LLYLEYLNLSFNRLKG 443
+ L+ N L+G
Sbjct: 271 ---RDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 70.2 bits (170), Expect = 5e-14
Identities = 56/260 (21%), Positives = 100/260 (38%), Gaps = 9/260 (3%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
+ +R++L N S + L+IL + +N + + L L+ LDLS N
Sbjct: 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
S +F L + L L + +L+Y+Y+
Sbjct: 92 QLRSVDPATF----HGLGRLHTLHL-DRCGLQELGPGLFRGLAALQYLYLQDNALQALPD 146
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
+ +L NL + L N+++ + L L L L++N++ P + +LGRL+ L
Sbjct: 147 DTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTL 206
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLP 350
+ N L + L L+ L L+ N + L + F SS+ + SLP
Sbjct: 207 YLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPL-WAWLQKFRGSSSEVPCSLP 265
Query: 351 LDIGNLKVVVGIDLSRNNLS 370
+ + L+ N+L
Sbjct: 266 QRLAGRDL---KRLAANDLQ 282
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 67.5 bits (163), Expect = 4e-13
Identities = 47/242 (19%), Positives = 79/242 (32%), Gaps = 14/242 (5%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPR 109
I L N+++ + + L L +N L L LE L L +N
Sbjct: 37 IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 110 HS-------NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ 162
L L+L+R P + L L ++ N+ T +L NL
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPY 222
L L N ++S + R +L + L N++ + P + +L +Y+
Sbjct: 157 HLFLHGNRISSVPER-----AFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL-MTLYLFA 210
Query: 223 CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLC 282
S E + L L + L N LQ +++ S+P L
Sbjct: 211 NNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSLPQRLA 269
Query: 283 NL 284
Sbjct: 270 GR 271
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 66.8 bits (161), Expect = 8e-13
Identities = 56/251 (22%), Positives = 87/251 (34%), Gaps = 5/251 (1%)
Query: 222 YCRRSG--RIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPD 279
C + G +P I + L N+++ S + L L+L+ N L
Sbjct: 17 SCPQQGLQAVPVGIPA--ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAA 74
Query: 280 SLCNLGRLVELQFYDNKLFGSI-PACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
+ L L +L DN S+ PA L L L L L + P F L +
Sbjct: 75 AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134
Query: 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP 398
N+L +L + + L N +S GL +L L N++ P
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHP 194
Query: 399 ESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNS 458
+ DL L L L N+ S + L L+YL L+ N + + +A
Sbjct: 195 HAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLWAWLQKFR 254
Query: 459 FMGNSFLCGSP 469
+ C P
Sbjct: 255 GSSSEVPCSLP 265
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 62.1 bits (149), Expect = 2e-11
Identities = 38/208 (18%), Positives = 60/208 (28%), Gaps = 15/208 (7%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+D ++N S+ L RL L ++ + P L + L N L L
Sbjct: 85 LDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQAL 144
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLE- 119
+L + L L N + LH+L+ L+L N L
Sbjct: 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM 204
Query: 120 -----RNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
NN S + L L + N + + LQ S + + S
Sbjct: 205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCS 263
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLHG 202
+ + L N L G
Sbjct: 264 LPQ--------RLAGRDLKRLAANDLQG 283
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Score = 54.4 bits (129), Expect = 8e-09
Identities = 47/257 (18%), Positives = 69/257 (26%), Gaps = 18/257 (7%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQ-ALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
N ++ +P + L +N + QL +
Sbjct: 38 FLHGNRISH-VPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSV 96
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG------PRHSNLE 114
P L L L L P L L+YL L++N NL
Sbjct: 97 DPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLT 156
Query: 115 RLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
L+L N S L L + N + P +L L L L N L++
Sbjct: 157 HLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSAL 216
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234
+E R L+ + L N L L+ +P+
Sbjct: 217 PTEALA-----PLRALQYLRLNDNPWVCDCR--ARPLWAWLQKFRGSSSEVPCSLPQ--- 266
Query: 235 NLINLITMSLGINKLTG 251
L L N L G
Sbjct: 267 RLAGRDLKRLAANDLQG 283
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 58.6 bits (140), Expect = 3e-10
Identities = 48/210 (22%), Positives = 76/210 (36%), Gaps = 7/210 (3%)
Query: 232 EIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQ 291
E+ + + + ++ LT ++P L K L+L +N L +L RL +L
Sbjct: 5 EVSKVASHLEVNCDKRNLT-ALPPDLPKD--TTILHLSENLLYTFSLATLMPYTRLTQLN 61
Query: 292 FYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPL 351
+L P+ L S+ +P +L + V + S N L
Sbjct: 62 LDRAELTKLQVDGT---LPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLG 118
Query: 352 DIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411
+ L + + L N L P ++ L SLA N L L L +L+ L
Sbjct: 119 ALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178
Query: 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRL 441
L NS IP+ F L + L N
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 33/212 (15%), Positives = 54/212 (25%), Gaps = 36/212 (16%)
Query: 17 CQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLL 76
+ ++ + ++T +P +L + + + LS N L + T L L
Sbjct: 6 VSKVASHLEVNCDKRNLTA-LPPDLPK--DTTILHLSENLLYTFSLATLMPYTRLTQLNL 62
Query: 77 GNNNLIGEIPHEI---------------------------GNLHNLEYLVLENNNFDGPR 109
L L +
Sbjct: 63 DRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALRG 122
Query: 110 HSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
L+ LYL+ N P + KL L + N+ + + L NL L L N
Sbjct: 123 LGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQEN 182
Query: 170 YLTSSTSELSFLSSLRNCRNLKVIDLTGNQLH 201
L + L L GN
Sbjct: 183 SLY------TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.9 bits (102), Expect = 2e-05
Identities = 40/214 (18%), Positives = 72/214 (33%), Gaps = 31/214 (14%)
Query: 154 TIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLST 213
++ + + ++ LT+ +L ++ ++ L+ N L+ +++ T
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPPDLP--------KDTTILHLSENLLYTFSLATLMPY-T 55
Query: 214 SLEYIY---------------------MPYCRRSGRIPEEIGNLINLITMSLGINKLTGS 252
L + + +P L L + + N+LT
Sbjct: 56 RLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSL 115
Query: 253 IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312
+L L +LQ LYL N+L+ P L +L +L +N L + L L
Sbjct: 116 PLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLD 175
Query: 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346
LLL N Y IP F + N
Sbjct: 176 TLLLQEN-SLYTIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.8 bits (99), Expect = 5e-05
Identities = 36/212 (16%), Positives = 66/212 (31%), Gaps = 8/212 (3%)
Query: 183 SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITM 242
+ + ++ L + P +L +++ + L +
Sbjct: 5 EVSKVASHLEVNCDKRNLTALPP----DLPKDTTILHLSENLLYTFSLATLMPYTRLTQL 60
Query: 243 SLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIP 302
+L +LT L L L L N+L+ V N+L
Sbjct: 61 NLDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVL-DVSFNRLTSLPL 117
Query: 303 ACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGI 362
+ L L+ L L N L + P + + ++N+L + L+ + +
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177
Query: 363 DLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394
L N+L +IP G L F L N
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Score = 37.8 bits (86), Expect = 0.002
Identities = 33/208 (15%), Positives = 60/208 (28%), Gaps = 5/208 (2%)
Query: 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLI 61
+ N L RL L+++ +T + +S + Q L+
Sbjct: 37 HLSENLLYT-FSLATLMPYTRLTQLNLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLL 95
Query: 62 PRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYL--- 118
+ + LT +L +G L L E + +L
Sbjct: 96 GQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSL 155
Query: 119 ERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSEL 178
NN + + L L ++ NS TIP L + L N + L
Sbjct: 156 ANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEIL 214
Query: 179 SFLSSLRNCRNLKVIDLTGNQLHGILPS 206
F L++ + G + + +
Sbjct: 215 YFRRWLQDNAENVYVWKQGVDVKAMTSN 242
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.1 bits (118), Expect = 2e-07
Identities = 40/277 (14%), Positives = 90/277 (32%), Gaps = 21/277 (7%)
Query: 41 LWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVL 100
LWQ + L+ L + + L+ + + + E + ++++ L
Sbjct: 1 LWQT-----LDLTGKNLHPDVTGRL--LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDL 53
Query: 101 ENNNFDG-------PRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIR--TNSFSGTI 151
N+ + + S L+ L LE S I + + S L L + + +
Sbjct: 54 SNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFAL 113
Query: 152 PSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVI-DLTGNQLHGILPSSMGN 210
+ +++ L L+LS+ + + ++ + + N L + +
Sbjct: 114 QTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRR 173
Query: 211 LSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSL-GINKLTGSIPISLGKLQKLQGLYLY 269
+ +E L L +SL + + LG++ L+ L ++
Sbjct: 174 CPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVF 233
Query: 270 KNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIG 306
+G++ L LQ + IG
Sbjct: 234 GIVPDGTLQLLKEALPH---LQINCSHFTTIARPTIG 267
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.6 bits (101), Expect = 3e-05
Identities = 46/259 (17%), Positives = 78/259 (30%), Gaps = 16/259 (6%)
Query: 193 IDLTGNQLHGILPSSMGNL-STSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG 251
+DLTG LH P G L S + P + E + M L + +
Sbjct: 5 LDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPF-RVQHMDLSNSVIEV 60
Query: 252 -SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSP 310
++ L + KLQ L L +L I ++L LV L F S
Sbjct: 61 STLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSC 120
Query: 311 LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN--- 367
R L+ + + + +L+G + +
Sbjct: 121 SRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHL 180
Query: 368 ------NLSDSIPTVIGGLSNLAFFSLAY-NKLQGSIPESLGDLRSLEFLDLSNNSFSGF 420
L + L+ L SL+ + LG++ +L+ L + G
Sbjct: 181 DLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGT 240
Query: 421 IPRSFEKLLYLEYLNLSFN 439
+ E L +L+ F
Sbjct: 241 LQLLKEALPHLQINCSHFT 259
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.2 bits (95), Expect = 2e-04
Identities = 38/241 (15%), Positives = 77/241 (31%), Gaps = 24/241 (9%)
Query: 11 SLPDDMCQHLPRLQALDINNNHVTG-PVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLT 69
P R+Q +D++N+ + + L QC +L +SL +L+ I + +
Sbjct: 36 DQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS 95
Query: 70 SARALLLGNNNLIGEI--PHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTI 127
+ L L + E + + L+ L L +H + ++ +
Sbjct: 96 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNL 155
Query: 128 PSFIFN-------------ASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSS 174
+ N + + + + L LQ L LS Y
Sbjct: 156 SGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIP 215
Query: 175 TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIG 234
+ L L LK + + G + ++ L +L ++ + + IG
Sbjct: 216 ET----LLELGEIPTLKTLQVFGI----VPDGTLQLLKEALPHLQINCSHFTTIARPTIG 267
Query: 235 N 235
N
Sbjct: 268 N 268
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 50.0 bits (117), Expect = 4e-07
Identities = 16/86 (18%), Positives = 29/86 (33%), Gaps = 10/86 (11%)
Query: 362 IDLSRNNLSDS-IPTVIGGLSNLAFFSLAYNKLQG----SIPESLGDLRSLEFLDLSNNS 416
+D+ LSD+ ++ L L L I +L +L L+L +N
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 417 FSGFIPRSFEKLL-----YLEYLNLS 437
+ L ++ L+L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQ 92
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 46.5 bits (108), Expect = 5e-06
Identities = 17/92 (18%), Positives = 35/92 (38%), Gaps = 6/92 (6%)
Query: 137 LSILGIRTNSFSGT-IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDL 195
+ L I+ S + L+ Q + L LT + + S+LR L ++L
Sbjct: 4 IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCK-DISSALRVNPALAELNL 62
Query: 196 TGNQLHGI----LPSSMGNLSTSLEYIYMPYC 223
N+L + + + S ++ + + C
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.8 bits (101), Expect = 4e-05
Identities = 17/89 (19%), Positives = 32/89 (35%), Gaps = 6/89 (6%)
Query: 128 PSFIFNASKLSILGIRTNSFSGT----IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSS 183
S L +L + S + + +T+ +L+ LDLS N L + + S
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL-QLVES 420
Query: 184 LR-NCRNLKVIDLTGNQLHGILPSSMGNL 211
+R L+ + L + + L
Sbjct: 421 VRQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 43.4 bits (100), Expect = 5e-05
Identities = 11/95 (11%), Positives = 27/95 (28%), Gaps = 5/95 (5%)
Query: 112 NLERLYLERNNFSGT-IPSFIFNASKLSILGIRTNSFSG----TIPSTIANLRNLQWLDL 166
+++ L ++ S + + ++ + + I S + L L+L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 167 SFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLH 201
N L ++ + L L
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.3 bits (97), Expect = 1e-04
Identities = 15/77 (19%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 362 IDLSRNNLSD----SIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD-----LRSLEFLDL 412
+ L+ ++SD S+ + +L L+ N L + L + LE L L
Sbjct: 374 LWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVL 433
Query: 413 SNNSFSGFIPRSFEKLL 429
+ +S + + L
Sbjct: 434 YDIYWSEEMEDRLQALE 450
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 41.9 bits (96), Expect = 2e-04
Identities = 19/76 (25%), Positives = 25/76 (32%), Gaps = 9/76 (11%)
Query: 381 SNLAFFSLAYNKLQG----SIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLL-----YL 431
S L LA + S+ +L SL LDLSNN + + L
Sbjct: 369 SVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLL 428
Query: 432 EYLNLSFNRLKGEIPS 447
E L L E+
Sbjct: 429 EQLVLYDIYWSEEMED 444
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.7 bits (93), Expect = 3e-04
Identities = 12/71 (16%), Positives = 23/71 (32%), Gaps = 5/71 (7%)
Query: 382 NLAFFSLAYNKLQGS-IPESLGDLRSLEFLDLSNNSFSG----FIPRSFEKLLYLEYLNL 436
++ + +L + E L L+ + + L + + I + L LNL
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 437 SFNRLKGEIPS 447
N L
Sbjct: 63 RSNELGDVGVH 73
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.6 bits (90), Expect = 8e-04
Identities = 11/91 (12%), Positives = 31/91 (34%), Gaps = 4/91 (4%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTG----PVPRNLWQCQELIAISLSHNQ 56
+D L+ + ++ L + Q + +++ +T + L L ++L N+
Sbjct: 7 LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66
Query: 57 LTGLIPRDIGNLTSARALLLGNNNLIGEIPH 87
L + + + + +L
Sbjct: 67 LGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.2 bits (89), Expect = 0.001
Identities = 15/92 (16%), Positives = 30/92 (32%), Gaps = 10/92 (10%)
Query: 334 DILVFNFSSNSLNGS-LPLDIGNLKVVVGIDLSRNNLSD----SIPTVIGGLSNLAFFSL 388
DI + L+ + + L+ + L L++ I + + LA +L
Sbjct: 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62
Query: 389 AYNKLQGSIPESLGDL-----RSLEFLDLSNN 415
N+L + ++ L L N
Sbjct: 63 RSNELGDVGVHCVLQGLQTPSCKIQKLSLQNC 94
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.0 bits (86), Expect = 0.002
Identities = 14/88 (15%), Positives = 27/88 (30%), Gaps = 9/88 (10%)
Query: 14 DDMCQHLPRLQALDINNNHVTG----PVPRNLWQCQELIAISLSHNQLTGLIPRDIG--- 66
+ Q L+ L + + V+ + L L + LS+N L +
Sbjct: 362 QGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESV 421
Query: 67 --NLTSARALLLGNNNLIGEIPHEIGNL 92
L+L + E+ + L
Sbjct: 422 RQPGCLLEQLVLYDIYWSEEMEDRLQAL 449
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 48.1 bits (113), Expect = 6e-07
Identities = 36/217 (16%), Positives = 68/217 (31%), Gaps = 22/217 (10%)
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
L N I ++ G + +T ++ + L + L + + + + L L+ L+ D
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
N++ P L + I L ++ + ++
Sbjct: 73 NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132
Query: 355 NLKVVVGIDLSRNNL--------------SDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400
L + + + + L S T + LS L NK+ P
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP-- 190
Query: 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437
L L +L + L NN S P L + L+
Sbjct: 191 LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.7 bits (99), Expect = 4e-05
Identities = 37/228 (16%), Positives = 73/228 (32%), Gaps = 26/228 (11%)
Query: 67 NLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG----PRHSNLERLYLERNN 122
L +A + G +N+ + +L + L +NL L L+ N
Sbjct: 17 ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTIEGVQYLNNLIGLELKDN- 73
Query: 123 FSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLS 182
I + + L L T P + + + ++ ++++ L+
Sbjct: 74 -------QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126
Query: 183 SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITM 242
L N + L + + + + Y+ + NL L T+
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTN--------LQYLSIGNAQVSDLTPLANLSKLTTL 178
Query: 243 SLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
NK++ P L L L ++L N++ P L N L +
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 42.3 bits (98), Expect = 5e-05
Identities = 38/182 (20%), Positives = 65/182 (35%), Gaps = 14/182 (7%)
Query: 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLG 77
Q+L L L++ +N +T P + +S + + I T
Sbjct: 60 QYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQI 119
Query: 78 NNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKL 137
+ + L+ + + G + YL N + + + N SKL
Sbjct: 120 TDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQ----YLSIGNAQVSDLTPLANLSKL 175
Query: 138 SILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTG 197
+ L N S P +A+L NL + L N ++ +S L N NL ++ LT
Sbjct: 176 TTLKADDNKISDISP--LASLPNLIEVHLKNNQISD-------VSPLANTSNLFIVTLT- 225
Query: 198 NQ 199
NQ
Sbjct: 226 NQ 227
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.4 bits (93), Expect = 2e-04
Identities = 38/259 (14%), Positives = 75/259 (28%), Gaps = 48/259 (18%)
Query: 156 ANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSL 215
L N + + +T + + + + G + I
Sbjct: 16 PALANAIKIAAGKSNVTD-------TVTQADLDGITTLSAFGTGVTTI------------ 56
Query: 216 EYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEG 275
E + L NLI + L N++T P+ L K
Sbjct: 57 ---------------EGVQYLNNLIGLELKDNQITDLAPLKNLTKITELELSGNPLKNVS 101
Query: 276 SIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDI 335
+I + + + + + L N + + + L + +LS+ +
Sbjct: 102 AIAGLQSIKTLDLTSTQITDVTPLAGLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNA 161
Query: 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQG 395
V + + + L N +SD P + L NL L N++
Sbjct: 162 QVSDLTPLANLSKLTTLKA----------DDNKISDISP--LASLPNLIEVHLKNNQISD 209
Query: 396 SIPESLGDLRSLEFLDLSN 414
P L + +L + L+N
Sbjct: 210 VSP--LANTSNLFIVTLTN 226
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Score = 40.0 bits (92), Expect = 3e-04
Identities = 32/212 (15%), Positives = 66/212 (31%), Gaps = 24/212 (11%)
Query: 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKV 192
+ + ++ + T+ T A+L + L +T+ + ++ NL
Sbjct: 17 ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTT-------IEGVQYLNNLIG 67
Query: 193 IDLTGNQLHGILPSS-------------MGNLSTSLEYIYMPYCRRSGRIPEEIGNLINL 239
++L NQ+ + P +++ + +
Sbjct: 68 LELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAG 127
Query: 240 ITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFG 299
++ + I YL + S L NL +L L+ DNK+
Sbjct: 128 LSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISD 187
Query: 300 SIPACIGKLSPLRNLLLHSNVLTYVIPSTFLS 331
P + L L + L +N ++ V P S
Sbjct: 188 ISP--LASLPNLIEVHLKNNQISDVSPLANTS 217
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 48.3 bits (113), Expect = 1e-06
Identities = 54/325 (16%), Positives = 97/325 (29%), Gaps = 20/325 (6%)
Query: 111 SNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY 170
L L S ++P + L L NS + +P +L++L + +
Sbjct: 38 RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLT-ELPELPQSLKSLLVDNNNLKA 92
Query: 171 LTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIP 230
L+ L +L N + L I + + +
Sbjct: 93 LSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQL 152
Query: 231 EEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290
EE+ L NL ++ + L + E +L L +
Sbjct: 153 EELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYAD 212
Query: 291 QFYDNKLFGSIPACIGKLSPLRNL-----LLHSNVLTYVIPSTFLSLRDILVFNFSSNSL 345
L P+ L L S V + F L ++ + N+
Sbjct: 213 NNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNAS 272
Query: 346 NGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLR 405
+ + + +++S N L +P + L L ++N L +PE
Sbjct: 273 SNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLERL---IASFNHLA-EVPELPQ--- 324
Query: 406 SLEFLDLSNNSFSGF--IPRSFEKL 428
+L+ L + N F IP S E L
Sbjct: 325 NLKQLHVEYNPLREFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 43.7 bits (101), Expect = 4e-05
Identities = 21/80 (26%), Positives = 35/80 (43%), Gaps = 9/80 (11%)
Query: 16 MCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALL 75
+C P L+ L+++NN + +P + + LI S N L +P NL L
Sbjct: 279 LCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLAE-VPELPQNLKQ---LH 330
Query: 76 LGNNNLIGEIPHEIGNLHNL 95
+ N L E P ++ +L
Sbjct: 331 VEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.9 bits (99), Expect = 6e-05
Identities = 54/345 (15%), Positives = 92/345 (26%), Gaps = 49/345 (14%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLH-------NLEYLVLEN 102
+ L++ L+ L P +L S L+ N+L E+P +L NL+ L
Sbjct: 43 LELNNLGLSSL-PELPPHLES---LVASCNSL-TELPELPQSLKSLLVDNNNLKALSDLP 97
Query: 103 NNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ 162
+ SN + L S + + + L L S +
Sbjct: 98 PLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPE 157
Query: 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIY--- 219
+L F + + ++ ++ L+T
Sbjct: 158 LQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLK 217
Query: 220 -MPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIP 278
+P S N + + L +L Y N I
Sbjct: 218 TLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR 277
Query: 279 DSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338
L EL +NKL +PA + L L+ N L
Sbjct: 278 SLCDLPPSLEELNVSNNKL-IELPALPPR---LERLIASFNHLA---------------- 317
Query: 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNL 383
+P NLK + + N L P + + +L
Sbjct: 318 ---------EVPELPQNLKQ---LHVEYNPLR-EFPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 42.1 bits (97), Expect = 1e-04
Identities = 20/84 (23%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 364 LSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR 423
N S+ I ++ +L +++ NKL +P LE L S N + +P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAE-VPE 321
Query: 424 SFEKLLYLEYLNLSFNRLKGEIPS 447
+ L + L++ +N L+ E P
Sbjct: 322 LPQNL---KQLHVEYNPLR-EFPD 341
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.7 bits (96), Expect = 1e-04
Identities = 59/324 (18%), Positives = 97/324 (29%), Gaps = 25/324 (7%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82
L++NN ++ +P + L+ S N LT L P +L S L
Sbjct: 40 AHELELNNLGLSS-LPELPPHLESLV---ASCNSLTEL-PELPQSLKSLLVDNNNLKALS 94
Query: 83 GEIP----HEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLS 138
P + N + L+N++F + L + N
Sbjct: 95 DLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEE 154
Query: 139 ILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGN 198
+ ++ F I + +L+ L L LS + + + L L L+N L I N
Sbjct: 155 LPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNN 214
Query: 199 QLHGILPSSMG-------NLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTG 251
L + + + L L +N +
Sbjct: 215 LLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSN 274
Query: 252 SIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPL 311
I L+ L + NKL +P L R L N L +P L
Sbjct: 275 EIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHL-AEVPELPQN---L 326
Query: 312 RNLLLHSNVLTYVIPSTFLSLRDI 335
+ L + N L P S+ D+
Sbjct: 327 KQLHVEYNPLRE-FPDIPESVEDL 349
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.3 bits (95), Expect = 2e-04
Identities = 16/76 (21%), Positives = 28/76 (36%), Gaps = 8/76 (10%)
Query: 110 HSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFN 169
+LE L + N +P+ +L L N + +P +NL+ L + +N
Sbjct: 283 PPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPEL---PQNLKQLHVEYN 334
Query: 170 YLTSSTSELSFLSSLR 185
L + LR
Sbjct: 335 PLREFPDIPESVEDLR 350
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 41.0 bits (94), Expect = 3e-04
Identities = 19/92 (20%), Positives = 35/92 (38%), Gaps = 10/92 (10%)
Query: 29 NNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHE 88
N + + L +++S+N+L +P L L+ N+L E+P
Sbjct: 268 YLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLER---LIASFNHL-AEVPEL 322
Query: 89 IGNLHNLEYLVLENNNFDGPRH--SNLERLYL 118
NL+ L +E N ++E L +
Sbjct: 323 PQ---NLKQLHVEYNPLREFPDIPESVEDLRM 351
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Score = 39.4 bits (90), Expect = 7e-04
Identities = 50/323 (15%), Positives = 99/323 (30%), Gaps = 26/323 (8%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
++ N L+ SLP+ P L++L + N +T +P + L+ + + L+ L
Sbjct: 43 LELNNLGLS-SLPEL----PPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDL 96
Query: 61 IPRDIGNLTS---------ARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHS 111
P S + + + + N
Sbjct: 97 PPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELP 156
Query: 112 NLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYL 171
L+ L ++ LS+ I + + NL L + N L
Sbjct: 157 ELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLL 216
Query: 172 TSS--TSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRI 229
+ ++R+ + +L + + ++ + + L S I
Sbjct: 217 KTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEI 276
Query: 230 PEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVE 289
+L +++ NKL +P +L++ L N L +P+ N L +
Sbjct: 277 RSLCDLPPSLEELNVSNNKLI-ELPALPPRLER---LIASFNHLA-EVPELPQN---LKQ 328
Query: 290 LQFYDNKLFGSIPACIGKLSPLR 312
L N L P + LR
Sbjct: 329 LHVEYNPL-REFPDIPESVEDLR 350
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 47.2 bits (110), Expect = 3e-06
Identities = 44/346 (12%), Positives = 96/346 (27%), Gaps = 26/346 (7%)
Query: 130 FIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRN 189
F L + I T ++ + + +++ + LS N + + + ++ + ++
Sbjct: 3 FSIEGKSLKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAAR-WLSENIASKKD 60
Query: 190 LKVIDLTGNQLHGILPSSMGNLSTSLEYIYM--PYCRRSGRIPEEIGNLINLITMSLGIN 247
L++ + + + L L+ + + L +
Sbjct: 61 LEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKH 120
Query: 248 KLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGK 307
+ + L G + + E ++ N L + N+L K
Sbjct: 121 TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAK 180
Query: 308 LSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367
LL ++ I + L L + + + +
Sbjct: 181 TFQSHRLLHTVKMVQNGIR-----------PEGIEHLLLEGLAYCQELKVLDLQDNTFTH 229
Query: 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGD------LRSLEFLDLSNNSFSGFI 421
S ++ + NL L L ++ D L+ L L N
Sbjct: 230 LGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDA 289
Query: 422 PRS-----FEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462
R+ EK+ L +L L+ NR E + G
Sbjct: 290 VRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDEIREVFSTRGRGE 335
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Score = 37.6 bits (85), Expect = 0.003
Identities = 37/330 (11%), Positives = 84/330 (25%), Gaps = 35/330 (10%)
Query: 23 LQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG----LIPRDIGNLTSARALLLGN 78
L+ I V L + + I LS N + + +I + +
Sbjct: 10 LKLDAITTEDEK-SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSD 68
Query: 79 NNL----------IGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIP 128
+ + + L + L +N F L ++ +
Sbjct: 69 IFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFL-SKHTPLEHLY 127
Query: 129 SFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLS------ 182
+ I + N L+ + N L + + + +
Sbjct: 128 LHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRL 187
Query: 183 -SLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLIT 241
+ L + L S + + + NL
Sbjct: 188 LHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRE 247
Query: 242 MSLGINKLTGSIPISLG------KLQKLQGLYLYKNKLEGSIPDSLC-----NLGRLVEL 290
+ L L+ ++ + LQ L L N++E +L + L+ L
Sbjct: 248 LGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFL 307
Query: 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNV 320
+ N+ F + ++ + + +
Sbjct: 308 ELNGNR-FSEEDDVVDEIREVFSTRGRGEL 336
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 46.2 bits (108), Expect = 3e-06
Identities = 31/198 (15%), Positives = 60/198 (30%), Gaps = 31/198 (15%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
++ VT V +N + + I +++ + + I L + L L N
Sbjct: 23 FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNGN 78
Query: 80 NLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSI 139
L P +L + L + + + + + +L
Sbjct: 79 KLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDINGLVHLPQLES 138
Query: 140 LGIRTNSFSGTI--------------------PSTIANLRNLQWLDLSFNYLTSSTSELS 179
L + N + +A L LQ L LS N+++
Sbjct: 139 LYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLSKNHISD------ 192
Query: 180 FLSSLRNCRNLKVIDLTG 197
L +L +NL V++L
Sbjct: 193 -LRALAGLKNLDVLELFS 209
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 41.9 bits (97), Expect = 7e-05
Identities = 41/203 (20%), Positives = 70/203 (34%), Gaps = 16/203 (7%)
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
I +L +T ++ + +L + + + ++ + L + +L
Sbjct: 22 AFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSVQG--IQYLPNVTKLFLNG 77
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
NKL P L NL + LS L S + + + G
Sbjct: 78 NKLTDIKP--------LANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISDING 129
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
+ + L N + TV+ L+ L SL N++ +P L L L+ L LS
Sbjct: 130 LVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSK 187
Query: 415 NSFSGFIPRSFEKLLYLEYLNLS 437
N S R+ L L+ L L
Sbjct: 188 NHISDL--RALAGLKNLDVLELF 208
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Score = 44.4 bits (103), Expect = 8e-06
Identities = 34/179 (18%), Positives = 65/179 (36%), Gaps = 22/179 (12%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ +N L D + LP L L++ N +TG P + + L N++ +
Sbjct: 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEI 93
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLER 120
+ L + L L +N + +P +L++L L L +N F+ H +L +
Sbjct: 94 SNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRK 153
Query: 121 NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179
+ +G + PS +R++Q DL + S+
Sbjct: 154 KSLNG-------------------GAARCGAPS---KVRDVQIKDLPHSEFKCSSENSE 190
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.5 bits (98), Expect = 2e-05
Identities = 15/156 (9%), Positives = 34/156 (21%), Gaps = 13/156 (8%)
Query: 43 QCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEI-GNLHNLEYLVLE 101
+ + + + + L + N + + L L L +
Sbjct: 6 CPHGSSGLRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIV 64
Query: 102 NNNFDGPRHSNLERLYLER-----NNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIA 156
+ N ++ L L + N +
Sbjct: 65 KSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSC----- 119
Query: 157 NLRNL-QWLDLSFNYLTSSTSELSFLSSLRNCRNLK 191
LR L +W + + + L + N
Sbjct: 120 ALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMPNAS 155
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 40.2 bits (92), Expect = 1e-04
Identities = 22/107 (20%), Positives = 35/107 (32%), Gaps = 2/107 (1%)
Query: 361 GIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIP-ESLGDLRSLEFLDLSNNSFSG 419
G+ +R+ + G NL + + + L L L L + +
Sbjct: 12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRF 70
Query: 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLC 466
P +F L LNLSFN L+ + + GN C
Sbjct: 71 VAPDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHC 117
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.7 bits (83), Expect = 0.002
Identities = 17/104 (16%), Positives = 30/104 (28%)
Query: 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGL 60
+ N L + L L+ L I + + P L ++LS N L L
Sbjct: 36 LYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESL 95
Query: 61 IPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN 104
+ + L+ +L GN + +
Sbjct: 96 SWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQK 139
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 40.9 bits (95), Expect = 5e-05
Identities = 21/117 (17%), Positives = 42/117 (35%), Gaps = 6/117 (5%)
Query: 72 RALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDG--PRHSNLERLYLERNNFSGT-IP 128
R L L + +L + + L + +L L +N P + L L + + + +
Sbjct: 1 RVLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPALAALRCLEVLQASDNALENV 58
Query: 129 SFIFNASKLSILGIRTNSFSGT-IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSL 184
+ N +L L + N + + + L L+L N L L+ +
Sbjct: 59 DGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEM 115
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Score = 37.4 bits (86), Expect = 8e-04
Identities = 25/109 (22%), Positives = 39/109 (35%), Gaps = 6/109 (5%)
Query: 337 VFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396
V + + L ++ + L +V +DLS N L P + L L +
Sbjct: 2 VLHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQ--ASDNALE 56
Query: 397 IPESLGDLRSLEFLDLSNNSFSGF-IPRSFEKLLYLEYLNLSFNRLKGE 444
+ + +L L+ L L NN + L LNL N L E
Sbjct: 57 NVDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQE 105
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 42.0 bits (97), Expect = 5e-05
Identities = 36/189 (19%), Positives = 70/189 (37%), Gaps = 22/189 (11%)
Query: 45 QELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNN 104
E + L +T + + +L L I I + L+NL + NN
Sbjct: 18 AEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLG-IKSIDG-VEYLNNLTQINFSNNQ 73
Query: 105 FDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWL 164
++ + I A+ ++ G+ + T + NL NL L
Sbjct: 74 LTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNRL 133
Query: 165 DLSFNYLTSSTS---------------ELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMG 209
+LS N ++ ++ +++ L L N L+ +D++ N++ I S +
Sbjct: 134 ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSDI--SVLA 191
Query: 210 NLSTSLEYI 218
L T+LE +
Sbjct: 192 KL-TNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 38.5 bits (88), Expect = 7e-04
Identities = 32/191 (16%), Positives = 59/191 (30%), Gaps = 28/191 (14%)
Query: 20 LPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNN 79
L + +VT V + ++ + + + + L + + NN
Sbjct: 17 LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 72
Query: 80 NLIGEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSI 139
L P + + P + L N T + N + L+
Sbjct: 73 QLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLNR 132
Query: 140 LGIRTN--------------------SFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELS 179
L + +N S T +ANL L+ LD+S N ++ +S
Sbjct: 133 LELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVSD----IS 188
Query: 180 FLSSLRNCRNL 190
L+ L N +L
Sbjct: 189 VLAKLTNLESL 199
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Score = 36.6 bits (83), Expect = 0.004
Identities = 37/200 (18%), Positives = 70/200 (35%), Gaps = 16/200 (8%)
Query: 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD 294
L + LG +T +S L ++ L + ++ SI D + L L ++ F +
Sbjct: 16 ALAEKMKTVLGKTNVTD--TVSQTDLDQVTTLQADRLGIK-SI-DGVEYLNNLTQINFSN 71
Query: 295 NKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIG 354
N+L P + + + + L N ++ ++
Sbjct: 72 NQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNLN 131
Query: 355 NLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSN 414
L S++I + + L ++ Q + + L +L +LE LD+S+
Sbjct: 132 RL----------ELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISS 181
Query: 415 NSFSGFIPRSFEKLLYLEYL 434
N S KL LE L
Sbjct: 182 NKVSD--ISVLAKLTNLESL 199
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 42.2 bits (97), Expect = 6e-05
Identities = 9/51 (17%), Positives = 15/51 (29%), Gaps = 3/51 (5%)
Query: 397 IPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447
+ LD+S E L L + LK ++P+
Sbjct: 193 PNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLK-KLPT 240
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Score = 38.4 bits (87), Expect = 0.001
Identities = 23/227 (10%), Positives = 57/227 (25%), Gaps = 7/227 (3%)
Query: 50 ISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFDGPR 109
+++T IP D+ +A L L +LE + + N+
Sbjct: 13 FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69
Query: 110 HSNLERLYLERNNFSGTIPSFI----FNASKLSILGIRTNSFSGTIPSTIANLRNLQWLD 165
+++ + + + + A + + I +
Sbjct: 70 EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129
Query: 166 LSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRR 225
+ + + +S VI + + N + E
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189
Query: 226 SGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNK 272
+ + + + ++ L L+KL+ Y K
Sbjct: 190 EELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 39.5 bits (91), Expect = 2e-04
Identities = 25/140 (17%), Positives = 45/140 (32%), Gaps = 9/140 (6%)
Query: 127 IPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRN 186
+ NA + L +R I + A L +D S N + L
Sbjct: 11 AAQYT-NAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-------KLDGFPL 61
Query: 187 CRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGI 246
R LK + + N++ I L E I + + +L +L + +
Sbjct: 62 LRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILR 121
Query: 247 NKLTGSIPISLGKLQKLQGL 266
N +T L + K+ +
Sbjct: 122 NPVTNKKHYRLYVIYKVPQV 141
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Score = 36.1 bits (82), Expect = 0.004
Identities = 24/133 (18%), Positives = 46/133 (34%), Gaps = 8/133 (6%)
Query: 67 NLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNF----DGPRHSNLERLYLERNN 122
N R L L I I + L + + +N P L+ L + N
Sbjct: 16 NAVRDRELDLRGYK-IPVIENLGATLDQFDAIDFSDNEIRKLDGFPLLRRLKTLLVNNNR 74
Query: 123 FSGTIPSFIFNASKLSILGIRTNSFSG-TIPSTIANLRNLQWLDLSFNYLTSSTSELSFL 181
L+ L + NS +A+L++L +L + N +T+ ++
Sbjct: 75 ICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYV 134
Query: 182 SSLRNCRNLKVID 194
+ ++V+D
Sbjct: 135 --IYKVPQVRVLD 145
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} Length = 198 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Score = 38.5 bits (88), Expect = 8e-04
Identities = 39/171 (22%), Positives = 63/171 (36%), Gaps = 17/171 (9%)
Query: 39 RNLWQCQELIAISLSHNQLTGLIPR------DIGNLTSARALLLGNNNLIGEIPHEIGNL 92
R + + ++A +L G+IP + L + + L L NN I +I + +
Sbjct: 12 RIFEERKSVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNN-IEKISS-LSGM 69
Query: 93 HNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSF----S 148
NL L L N + + LE S + + KL L + S +
Sbjct: 70 ENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLSGIEKLVNLRVLYMSNNKITN 129
Query: 149 GTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLR-----NCRNLKVID 194
+A L L+ L L+ N L + E + S R NLK +D
Sbjct: 130 WGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 508 | |||
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.97 | |
| d2omza2 | 384 | Internalin A {Listeria monocytogenes [TaxId: 1639] | 99.95 | |
| d1ogqa_ | 313 | Polygalacturonase inhibiting protein PGIP {Kidney | 99.95 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.93 | |
| d1xkua_ | 305 | Decorin {Cow (Bos taurus) [TaxId: 9913]} | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1ozna_ | 284 | Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma | 99.92 | |
| d1p9ag_ | 266 | von Willebrand factor binding domain of glycoprote | 99.88 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.82 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.82 | |
| d1jl5a_ | 353 | Leucine rich effector protein YopM {Yersinia pesti | 99.81 | |
| d1z7xw1 | 460 | Ribonuclease inhibitor {Human (Homo sapiens) [TaxI | 99.79 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.75 | |
| d1h6ua2 | 227 | Internalin H {Listeria monocytogenes [TaxId: 1639] | 99.74 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.73 | |
| d1xwdc1 | 242 | Follicle-stimulating hormone receptor {Human (Homo | 99.72 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1w8aa_ | 192 | Slit {Fruit fly (Drosophila melanogaster) [TaxId: | 99.71 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.71 | |
| d1h6ta2 | 210 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2omxa2 | 199 | Internalin B {Listeria monocytogenes [TaxId: 1639] | 99.69 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.6 | |
| d2astb2 | 284 | Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa | 99.57 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.55 | |
| d1a9na_ | 162 | Splicesomal U2A' protein {Human (Homo sapiens) [Ta | 99.53 | |
| d2ca6a1 | 344 | Rna1p (RanGAP1), N-terminal domain {Fission yeast | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.52 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.52 | |
| d1dcea3 | 124 | Rab geranylgeranyltransferase alpha-subunit, C-ter | 99.51 | |
| d2ifga3 | 156 | High affinity nerve growth factor receptor, N-term | 99.36 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.28 | |
| d1m9la_ | 198 | Outer arm dynein light chain 1 {Green algae (Chlam | 99.28 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.42 | |
| d1koha1 | 162 | mRNA export factor tap {Human (Homo sapiens) [TaxI | 98.24 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 98.1 | |
| d1pgva_ | 167 | Tropomodulin C-terminal domain {nematode (Caenorha | 97.79 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 97.57 | |
| d1io0a_ | 166 | Tropomodulin C-terminal domain {Chicken (Gallus ga | 96.96 |
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.97 E-value=5.1e-30 Score=241.04 Aligned_cols=258 Identities=33% Similarity=0.528 Sum_probs=224.8
Q ss_pred ccCeeEccCCcCcc--cCChhhhcCCCCcEEEccc-CccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEE
Q 045861 214 SLEYIYMPYCRRSG--RIPEEIGNLINLITMSLGI-NKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVEL 290 (508)
Q Consensus 214 ~L~~L~l~~~~~~~--~~~~~l~~l~~L~~L~l~~-~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 290 (508)
+++.|+++++.+.+ .+|..+..+++|++|++++ |.+.+.+|..++++++|++|++++|.+.+..+..+..+++|+.+
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l 130 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhccc
Confidence 46666666666655 4677888889999999986 77887888889999999999999999888888888889999999
Q ss_pred EeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCC-cEEEccCCccccccCccccCCCCCcEEECCCCcC
Q 045861 291 QFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDI-LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNL 369 (508)
Q Consensus 291 ~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L-~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 369 (508)
+++.|.+....|..+..++.++.+++++|.+.+..+..+..+..+ +.+++++|++++..+..+..+..+ .++++++..
T Consensus 131 ~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~~ 209 (313)
T d1ogqa_ 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNML 209 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSEE
T ss_pred ccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-ccccccccc
Confidence 999998888888889999999999999999988888777777665 889999999998888888777554 799999999
Q ss_pred CCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCcc
Q 045861 370 SDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGE 449 (508)
Q Consensus 370 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~ 449 (508)
.+..+..+..+++++.+++++|.+.+.++ .+..+++|+.|++++|++++.+|+.|.++++|++|++++|+++|.+|...
T Consensus 210 ~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~~ 288 (313)
T d1ogqa_ 210 EGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGG 288 (313)
T ss_dssp EECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCST
T ss_pred ccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCCcc
Confidence 88889989999999999999999986554 57889999999999999999999999999999999999999999999887
Q ss_pred ccCCCCcccccCCCCCCCCCCCCCCCC
Q 045861 450 SFANFSDNSFMGNSFLCGSPNLQVPPR 476 (508)
Q Consensus 450 ~~~~l~~l~l~~n~~~c~~~~~~~~~~ 476 (508)
.+.+|+.+++.+|+.+|+.|. |+|
T Consensus 289 ~L~~L~~l~l~~N~~l~g~pl---p~c 312 (313)
T d1ogqa_ 289 NLQRFDVSAYANNKCLCGSPL---PAC 312 (313)
T ss_dssp TGGGSCGGGTCSSSEEESTTS---SCC
T ss_pred cCCCCCHHHhCCCccccCCCC---CCC
Confidence 889999999999999999774 677
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.97 E-value=1e-27 Score=232.18 Aligned_cols=192 Identities=27% Similarity=0.388 Sum_probs=132.0
Q ss_pred hhhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCC
Q 045861 232 EIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPL 311 (508)
Q Consensus 232 ~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L 311 (508)
....+++++.++++++.+.+..+ ...+++|++|++++|.+++ + ..+..+++|+.+++++|.+.+.. .+..+++|
T Consensus 192 ~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L 265 (384)
T d2omza2 192 VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLTKL 265 (384)
T ss_dssp GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCTTC
T ss_pred ccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccccC
Confidence 45566677777777777664433 3456677777777777763 2 34666777777777777765332 25667777
Q ss_pred CEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCC
Q 045861 312 RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYN 391 (508)
Q Consensus 312 ~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 391 (508)
++|+++++.+.... .+..++.++.++++.|.+.+. ..+..+++++.|++++|++.+.. .+..+++|++|++++|
T Consensus 266 ~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n 339 (384)
T d2omza2 266 TELKLGANQISNIS--PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANN 339 (384)
T ss_dssp SEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSS
T ss_pred CEeeccCcccCCCC--ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCC
Confidence 77777777776443 356677777777777777632 24666777888888888777543 2677788888888888
Q ss_pred cccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCC
Q 045861 392 KLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFN 439 (508)
Q Consensus 392 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n 439 (508)
++++ ++ .+.++++|++|++++|++++..| +.++++|+.|++++|
T Consensus 340 ~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N 383 (384)
T d2omza2 340 KVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ 383 (384)
T ss_dssp CCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred CCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence 8773 33 47777888888888888876543 777788888888776
|
| >d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin A species: Listeria monocytogenes [TaxId: 1639]
Probab=99.95 E-value=3.2e-26 Score=221.58 Aligned_cols=356 Identities=21% Similarity=0.310 Sum_probs=243.0
Q ss_pred ecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccccCC
Q 045861 27 DINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENNNFD 106 (508)
Q Consensus 27 ~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 106 (508)
.++...+++.+. ...+.+|++|++++++++.. +.+..+++|++|++++|++++. + .++++++|++|++++|.+.
T Consensus 28 ~l~~~~~~~~~~--~~~l~~l~~L~l~~~~I~~l--~gl~~L~nL~~L~Ls~N~l~~l-~-~l~~L~~L~~L~L~~n~i~ 101 (384)
T d2omza2 28 VLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIA 101 (384)
T ss_dssp HTTCSSTTSEEC--HHHHTTCCEEECCSSCCCCC--TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred HhCCCCCCCccC--HHHhCCCCEEECCCCCCCCc--cccccCCCCCEEeCcCCcCCCC-c-cccCCcccccccccccccc
Confidence 455555554332 34566788888888877754 4567777788888888777633 2 3677777777777776654
Q ss_pred CCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccC
Q 045861 107 GPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRN 186 (508)
Q Consensus 107 ~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~ 186 (508)
. + ..+..+++|+.+++.++.+++..+ ......+.......+.+...... ..
T Consensus 102 ~-------------------i-~~l~~l~~L~~L~~~~~~~~~~~~--~~~~~~~~~~~~~~~~l~~~~~~-------~~ 152 (384)
T d2omza2 102 D-------------------I-TPLANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISAL-------SG 152 (384)
T ss_dssp C-------------------C-GGGTTCTTCCEEECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCGGG-------TT
T ss_pred c-------------------c-cccccccccccccccccccccccc--ccccccccccccccccccccccc-------cc
Confidence 1 1 225556666666666665553222 22333444444443333221100 00
Q ss_pred CCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcE
Q 045861 187 CRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGL 266 (508)
Q Consensus 187 ~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L 266 (508)
....... ...... .....+.............+... .......+++++.+
T Consensus 153 ~~~~~~~-----------------------~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~l~~~~~l 202 (384)
T d2omza2 153 LTSLQQL-----------------------SFGNQV-----TDLKPLANLTTLERLDISSNKVS--DISVLAKLTNLESL 202 (384)
T ss_dssp CTTCSEE-----------------------EEEESC-----CCCGGGTTCTTCCEEECCSSCCC--CCGGGGGCTTCSEE
T ss_pred ccccccc-----------------------cccccc-----chhhhhccccccccccccccccc--ccccccccccccee
Confidence 0000000 000000 11122334444455555555443 34556788999999
Q ss_pred EccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccc
Q 045861 267 YLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 267 ~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 346 (508)
.+++|.+.+..+ +...++|++|++++|.+.. ...+..+++|+.|++++|.+++.. .+..+++|+++++++++++
T Consensus 203 ~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~ 276 (384)
T d2omza2 203 IATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLASLTNLTDLDLANNQISNLA--PLSGLTKLTELKLGANQIS 276 (384)
T ss_dssp ECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCC
T ss_pred eccCCccCCCCc--ccccCCCCEEECCCCCCCC--cchhhcccccchhccccCccCCCC--cccccccCCEeeccCcccC
Confidence 999999886543 5667899999999998864 245778899999999999988654 3778899999999999998
Q ss_pred cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCccccc
Q 045861 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFE 426 (508)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~ 426 (508)
+.. .+..++.++.+++++|.+.+ ...+..+++++.|++++|++++.. .+..+++|++|++++|++++. + .+.
T Consensus 277 ~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~n~l~~l-~-~l~ 348 (384)
T d2omza2 277 NIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFANNKVSDV-S-SLA 348 (384)
T ss_dssp CCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCSSCCCCC-G-GGG
T ss_pred CCC--cccccccccccccccccccc--ccccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCCCCCCCC-h-hHc
Confidence 543 36788999999999999985 334788999999999999998653 378899999999999999853 3 689
Q ss_pred CCCCCCEEeCCCCcceecCCCccccCCCCcccccCC
Q 045861 427 KLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGN 462 (508)
Q Consensus 427 ~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n 462 (508)
++++|++|++++|++++ +++...+++|+.+++++|
T Consensus 349 ~l~~L~~L~l~~N~l~~-l~~l~~l~~L~~L~L~~N 383 (384)
T d2omza2 349 NLTNINWLSAGHNQISD-LTPLANLTRITQLGLNDQ 383 (384)
T ss_dssp GCTTCCEEECCSSCCCB-CGGGTTCTTCSEEECCCE
T ss_pred CCCCCCEEECCCCcCCC-ChhhccCCCCCEeeCCCC
Confidence 99999999999999984 555667889999999988
|
| >d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Polygalacturonase inhibiting protein PGIP domain: Polygalacturonase inhibiting protein PGIP species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]
Probab=99.95 E-value=5.3e-27 Score=220.24 Aligned_cols=251 Identities=30% Similarity=0.446 Sum_probs=219.7
Q ss_pred CCCEEEccCccCcc--CCChhhhhcccccCeeEccC-CcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCc
Q 045861 189 NLKVIDLTGNQLHG--ILPSSMGNLSTSLEYIYMPY-CRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQG 265 (508)
Q Consensus 189 ~L~~L~l~~~~~~~--~~~~~~~~~~~~L~~L~l~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~ 265 (508)
.++.|+++++.+.+ .+|..+..++ +|++|++++ |.+.+.+|..+.++++|++|++++|.+.+..+..+..+..|++
T Consensus 51 ~v~~L~L~~~~l~g~~~lp~~l~~L~-~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~ 129 (313)
T d1ogqa_ 51 RVNNLDLSGLNLPKPYPIPSSLANLP-YLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVT 129 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCT-TCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCE
T ss_pred EEEEEECCCCCCCCCCCCChHHhcCc-cccccccccccccccccccccccccccchhhhccccccccccccccchhhhcc
Confidence 57778888887776 3677787776 888998886 6788888989999999999999999998888888889999999
Q ss_pred EEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCC-CEEEcCCCcccccCCccccCccCCcEEEccCCc
Q 045861 266 LYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPL-RNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNS 344 (508)
Q Consensus 266 L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~ 344 (508)
++++.|.+...+|..+..+++++.+++++|.+.+.+|..+..+..+ +.+++++|++++..+..+..+..+ .+++..+.
T Consensus 130 l~l~~N~~~~~~p~~l~~l~~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l~~~~ 208 (313)
T d1ogqa_ 130 LDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDLSRNM 208 (313)
T ss_dssp EECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEECCSSE
T ss_pred cccccccccccCchhhccCcccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccccccc
Confidence 9999999888889999999999999999999988888888888776 889999999998888777776544 79999999
Q ss_pred cccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCccc
Q 045861 345 LNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRS 424 (508)
Q Consensus 345 l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~ 424 (508)
..+.+|..+..++.++.+++++|.+.+..+ .+..+++|+.|++++|++++.+|..+.++++|++|+|++|++++.+|+
T Consensus 209 ~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~- 286 (313)
T d1ogqa_ 209 LEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ- 286 (313)
T ss_dssp EEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-
T ss_pred cccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-
Confidence 998899999999999999999999986554 578889999999999999999999999999999999999999988884
Q ss_pred ccCCCCCCEEeCCCCccee
Q 045861 425 FEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 425 l~~l~~L~~L~l~~n~l~~ 443 (508)
+..+++|+.+++++|+..+
T Consensus 287 ~~~L~~L~~l~l~~N~~l~ 305 (313)
T d1ogqa_ 287 GGNLQRFDVSAYANNKCLC 305 (313)
T ss_dssp STTGGGSCGGGTCSSSEEE
T ss_pred cccCCCCCHHHhCCCcccc
Confidence 5788999999999998543
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.93 E-value=2.9e-24 Score=200.66 Aligned_cols=245 Identities=23% Similarity=0.316 Sum_probs=156.5
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
..+.++.++.+++ .+|..+ .+++++|+|++|+++.+.+.+|.++++|++|++++|.+....|.+|.++++|++|+++
T Consensus 11 ~~~~~~C~~~~L~-~lP~~l--~~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~ 87 (305)
T d1xkua_ 11 HLRVVQCSDLGLE-KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87 (305)
T ss_dssp ETTEEECTTSCCC-SCCCSC--CTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred cCCEEEecCCCCC-ccCCCC--CCCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEeccc
Confidence 5678888888888 567665 3689999999999987766788899999999999999887778889999999999998
Q ss_pred cccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccc
Q 045861 102 NNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFL 181 (508)
Q Consensus 102 ~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 181 (508)
+|+++ .+|..+ ...++.|.+..|.+....+..+.....++.+....+........ .
T Consensus 88 ~n~l~-------------------~l~~~~--~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~---~ 143 (305)
T d1xkua_ 88 KNQLK-------------------ELPEKM--PKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIE---N 143 (305)
T ss_dssp SSCCS-------------------BCCSSC--CTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBC---T
T ss_pred CCccC-------------------cCccch--hhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCC---c
Confidence 88876 333322 24667777777777655555566666777777766654332211 1
Q ss_pred ccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCC
Q 045861 182 SSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQ 261 (508)
Q Consensus 182 ~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~ 261 (508)
..+..+++|+.++++++.+... +.. ..++++.|++.++......+..+..++.++.|++++|.+.+..+.++.+++
T Consensus 144 ~~~~~l~~L~~l~l~~n~l~~l-~~~---~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~ 219 (305)
T d1xkua_ 144 GAFQGMKKLSYIRIADTNITTI-PQG---LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTP 219 (305)
T ss_dssp TGGGGCTTCCEEECCSSCCCSC-CSS---CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGST
T ss_pred cccccccccCccccccCCcccc-Ccc---cCCccCEEECCCCcCCCCChhHhhccccccccccccccccccccccccccc
Confidence 3466667777777777766532 211 122555555555555545555555555555555555555544445555555
Q ss_pred CCCcEEccCCcCccccchhhhCCCCCcEEEeeCceee
Q 045861 262 KLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLF 298 (508)
Q Consensus 262 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 298 (508)
+|++|++++|.++ .+|..+..+++|++|++++|+++
T Consensus 220 ~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~ 255 (305)
T d1xkua_ 220 HLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS 255 (305)
T ss_dssp TCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred cceeeeccccccc-ccccccccccCCCEEECCCCccC
Confidence 5555555555554 33444445555555555555443
|
| >d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Decorin species: Cow (Bos taurus) [TaxId: 9913]
Probab=99.92 E-value=1.8e-23 Score=195.24 Aligned_cols=246 Identities=19% Similarity=0.245 Sum_probs=136.7
Q ss_pred CCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCccccCCCCCCcEEc
Q 045861 189 NLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYL 268 (508)
Q Consensus 189 ~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l 268 (508)
++++|++++|.++...+.+|..+. +|++|+++++.+....|..+..+++|++|++++|.++. +|.. ....+..|.+
T Consensus 32 ~l~~L~Ls~N~i~~l~~~~f~~l~-~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~-l~~~--~~~~l~~L~~ 107 (305)
T d1xkua_ 32 DTALLDLQNNKITEIKDGDFKNLK-NLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKE-LPEK--MPKTLQELRV 107 (305)
T ss_dssp TCCEEECCSSCCCCBCTTTTTTCT-TCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSB-CCSS--CCTTCCEEEC
T ss_pred CCCEEECcCCcCCCcChhHhhccc-cccccccccccccccchhhhhCCCccCEecccCCccCc-Cccc--hhhhhhhhhc
Confidence 344444444444433333333333 44444444444444444455556666666666666553 2222 2345666666
Q ss_pred cCCcCccccchhhhCCCCCcEEEeeCcee--eeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccc
Q 045861 269 YKNKLEGSIPDSLCNLGRLVELQFYDNKL--FGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLN 346 (508)
Q Consensus 269 ~~n~l~~~~~~~~~~l~~L~~L~L~~n~~--~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~ 346 (508)
.+|.+.+..+..+.....+..+....+.. .......+..+++|+.+++++|.+...... .+++|++|++++|...
T Consensus 108 ~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~~l~~~---~~~~L~~L~l~~n~~~ 184 (305)
T d1xkua_ 108 HENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQG---LPPSLTELHLDGNKIT 184 (305)
T ss_dssp CSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSCCSS---CCTTCSEEECTTSCCC
T ss_pred cccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCccccCcc---cCCccCEEECCCCcCC
Confidence 66666654444555555666666655532 122333455556666666666665543222 2356666666666666
Q ss_pred cccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccc-
Q 045861 347 GSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSF- 425 (508)
Q Consensus 347 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l- 425 (508)
...+..+..++.+++|++++|.+.+..+..+.++++|++|+|++|+++ .+|.++..+++|++|++++|+++......|
T Consensus 185 ~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~ 263 (305)
T d1xkua_ 185 KVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFC 263 (305)
T ss_dssp EECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSS
T ss_pred CCChhHhhccccccccccccccccccccccccccccceeeeccccccc-ccccccccccCCCEEECCCCccCccChhhcc
Confidence 556666666666666666666666555566666666666666666666 455566666666666666666664433333
Q ss_pred -----cCCCCCCEEeCCCCcce
Q 045861 426 -----EKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 426 -----~~l~~L~~L~l~~n~l~ 442 (508)
...++|+.|++++|++.
T Consensus 264 ~~~~~~~~~~L~~L~L~~N~~~ 285 (305)
T d1xkua_ 264 PPGYNTKKASYSGVSLFSNPVQ 285 (305)
T ss_dssp CSSCCTTSCCCSEEECCSSSSC
T ss_pred CcchhcccCCCCEEECCCCcCc
Confidence 23455666666666654
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.2e-24 Score=198.59 Aligned_cols=204 Identities=26% Similarity=0.247 Sum_probs=154.7
Q ss_pred CCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEE
Q 045861 260 LQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFN 339 (508)
Q Consensus 260 ~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 339 (508)
...+.+++.+++.++ .+|..+. +++++|+|++|.+.+..+..|..+++|++|++++|.++... .+..+++|++|+
T Consensus 9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l~--~~~~l~~L~~L~ 83 (266)
T d1p9ag_ 9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQ--VDGTLPVLGTLD 83 (266)
T ss_dssp STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEE--CCSCCTTCCEEE
T ss_pred cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccccc--cccccccccccc
Confidence 344455566666665 3443332 35667777777666555566667777777777777766543 345677788888
Q ss_pred ccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccc
Q 045861 340 FSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSG 419 (508)
Q Consensus 340 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~ 419 (508)
+++|+++ ..+..+..++.|+.|++++|.+....+..+..+.++++|++++|.++...+..+..+++++.+++++|++++
T Consensus 84 Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~ 162 (266)
T d1p9ag_ 84 LSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTE 162 (266)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSC
T ss_pred ccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccc
Confidence 8888777 445667788888888888888887777778888899999999999887777778888899999999999998
Q ss_pred cCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 420 FIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 420 ~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
..++.|..+++|++|++++|+++ .+|.. ....+|+.+++++|||.|+|..
T Consensus 163 ~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~CdC~~ 213 (266)
T d1p9ag_ 163 LPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCNCEI 213 (266)
T ss_dssp CCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCSGGG
T ss_pred cCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCCcch
Confidence 88888889999999999999988 77765 4567888999999999999964
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=1.1e-24 Score=201.02 Aligned_cols=206 Identities=23% Similarity=0.224 Sum_probs=107.5
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeC-ceeeeeCCcccCCCCCCCEEEc
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYD-NKLFGSIPACIGKLSPLRNLLL 316 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~l 316 (508)
++++|++++|.++...+.+|.++++|++|++++|.+....+..+...+.+..+.... +.+....+..+..+++|++|++
T Consensus 33 ~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~~L~~L~l 112 (284)
T d1ozna_ 33 ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHL 112 (284)
T ss_dssp TCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEEC
T ss_pred CCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccccCCEEec
Confidence 455555555555544444555555555555555555544444455555555554432 2333333444555555555555
Q ss_pred CCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccccc
Q 045861 317 HSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGS 396 (508)
Q Consensus 317 ~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 396 (508)
++|.+.......+....+|+.+++++|.+++..+..+..++.|+.|++++|++....+.+|.++++|+++++++|++++.
T Consensus 113 ~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~~N~l~~i 192 (284)
T d1ozna_ 113 DRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHV 192 (284)
T ss_dssp TTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEE
T ss_pred CCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhhhcccccc
Confidence 55555544444455555555555555555544444455555555555555555544444455555555555555555544
Q ss_pred CcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCccee
Q 045861 397 IPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 397 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
.|..|..+++|+.|++++|++.+..+..|..+++|++|++++|++.+
T Consensus 193 ~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C 239 (284)
T d1ozna_ 193 HPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVC 239 (284)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEEC
T ss_pred ChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCC
Confidence 45555555555555555555555444555555555555555555543
|
| >d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=9e-25 Score=201.72 Aligned_cols=226 Identities=22% Similarity=0.214 Sum_probs=153.4
Q ss_pred EEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC-CCc
Q 045861 242 MSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH-SNV 320 (508)
Q Consensus 242 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~-~n~ 320 (508)
++.++..++ .+|..+. +.+++|+|++|.++...+..|.++++|++|++++|.+....+..+...+.++.+.+. .+.
T Consensus 16 v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~ 92 (284)
T d1ozna_ 16 TSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92 (284)
T ss_dssp EECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTT
T ss_pred EEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccc
Confidence 344444444 3343332 456777777777765555567777777777777777766666666667777777654 445
Q ss_pred ccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCccc
Q 045861 321 LTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPES 400 (508)
Q Consensus 321 ~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 400 (508)
+....+..|..+++|++|++++|.+....+..+....+|+.+++++|.+++..+..|..+++|+.|++++|.++...+.+
T Consensus 93 ~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~ 172 (284)
T d1ozna_ 93 LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERA 172 (284)
T ss_dssp CCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTT
T ss_pred cccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhh
Confidence 55555666777777777777777776555666666777777777777777655666777777777777777777666677
Q ss_pred ccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCc-cccCCCCcccccCCCCCCCCCC
Q 045861 401 LGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 401 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
|.++++|+.+++++|++++..|..|.++++|++|++++|++.+..|.. ....+|+.+++++|||.|+|+.
T Consensus 173 f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~ 243 (284)
T d1ozna_ 173 FRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA 243 (284)
T ss_dssp TTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG
T ss_pred hccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc
Confidence 777777777777777777777777777777777777777776433332 3456677777777777777764
|
| >d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: von Willebrand factor binding domain of glycoprotein Ib alpha species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.88 E-value=9e-22 Score=179.32 Aligned_cols=203 Identities=25% Similarity=0.210 Sum_probs=163.1
Q ss_pred cCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEE
Q 045861 235 NLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNL 314 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L 314 (508)
....+..++.+++.++ .+|..+. +++++|++++|.+.+..+..|..+++|++|++++|.++.. + .+..+++|++|
T Consensus 8 ~~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L 82 (266)
T d1p9ag_ 8 KVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-Q-VDGTLPVLGTL 82 (266)
T ss_dssp CSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-E-CCSCCTTCCEE
T ss_pred ccCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccccc-c-ccccccccccc
Confidence 3445566677777777 3554443 5688888888888766667788888888888888887643 2 34678889999
Q ss_pred EcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCccc
Q 045861 315 LLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQ 394 (508)
Q Consensus 315 ~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 394 (508)
++++|++... +..+..+++|++|++++|.+.+..+..+..+.++++|++++|.+....+..+..+++++.+++++|+++
T Consensus 83 ~Ls~N~l~~~-~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~ 161 (266)
T d1p9ag_ 83 DLSHNQLQSL-PLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT 161 (266)
T ss_dssp ECCSSCCSSC-CCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCS
T ss_pred cccccccccc-ccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhccccccccc
Confidence 9998888754 556778888999999999888777778888899999999999998777777888999999999999999
Q ss_pred ccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceec
Q 045861 395 GSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGE 444 (508)
Q Consensus 395 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~ 444 (508)
+..++.|..+++|++|+|++|+++ .+|+.+..+++|+.|++++|++.+.
T Consensus 162 ~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~Cd 210 (266)
T d1p9ag_ 162 ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLCN 210 (266)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCCS
T ss_pred ccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCCC
Confidence 777788888999999999999998 6777777889999999999998754
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.82 E-value=3.2e-17 Score=155.54 Aligned_cols=137 Identities=29% Similarity=0.387 Sum_probs=68.3
Q ss_pred CCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCc
Q 045861 22 RLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLE 101 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 101 (508)
++++|+++++.++ .+|+. .++|++|++++|+++ .+|+. ..+|++|++++|++. .+++. .+.|++|+++
T Consensus 39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~-~l~~l---p~~L~~L~L~ 106 (353)
T d1jl5a_ 39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLK-ALSDL---PPLLEYLGVS 106 (353)
T ss_dssp TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCS-CCCSC---CTTCCEEECC
T ss_pred CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccc-hhhhh---cccccccccc
Confidence 4666666666665 44532 356666666666666 33433 245666666666554 22210 0234444444
Q ss_pred cccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCcCCCCCCccc
Q 045861 102 NNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLTSSTSELSFL 181 (508)
Q Consensus 102 ~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~ 181 (508)
+|.+. .+|. +..+++|++++++++.+... +. ....+..+.+..+.....
T Consensus 107 ~n~l~-------------------~lp~-~~~l~~L~~L~l~~~~~~~~-~~---~~~~l~~l~~~~~~~~~~------- 155 (353)
T d1jl5a_ 107 NNQLE-------------------KLPE-LQNSSFLKIIDVDNNSLKKL-PD---LPPSLEFIAAGNNQLEEL------- 155 (353)
T ss_dssp SSCCS-------------------SCCC-CTTCTTCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSSC-------
T ss_pred ccccc-------------------cccc-hhhhccceeecccccccccc-cc---ccccccchhhcccccccc-------
Confidence 44333 3332 45566777777766665422 21 234455555544433221
Q ss_pred ccccCCCCCCEEEccCccCc
Q 045861 182 SSLRNCRNLKVIDLTGNQLH 201 (508)
Q Consensus 182 ~~l~~~~~L~~L~l~~~~~~ 201 (508)
..+..++.++.+.+.++...
T Consensus 156 ~~l~~l~~l~~L~l~~n~~~ 175 (353)
T d1jl5a_ 156 PELQNLPFLTAIYADNNSLK 175 (353)
T ss_dssp CCCTTCTTCCEEECCSSCCS
T ss_pred ccccccccceeccccccccc
Confidence 22344455556666555443
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=7e-22 Score=195.33 Aligned_cols=354 Identities=20% Similarity=0.201 Sum_probs=161.9
Q ss_pred CCcEEecCCCcCCCC-CCcCCcCCCCCcEEEcccCCCCCC----CCcccCCCCCCCeEEccCCccccCCchh----cc-C
Q 045861 22 RLQALDINNNHVTGP-VPRNLWQCQELIAISLSHNQLTGL----IPRDIGNLTSARALLLGNNNLIGEIPHE----IG-N 91 (508)
Q Consensus 22 ~L~~L~l~~~~~~~~-~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~~~~~----~~-~ 91 (508)
+|++||++++.+++. +.+.+..++++++|+|++|.++.. ++..+..+++|++|+|++|++....... +. .
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~ 82 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP 82 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence 466677776666532 122244456666677766666521 2233455666666666666554211111 11 1
Q ss_pred CCCCCEeeCccccCCCCCCCCCCEEEccCCccccc----CCccccCCCCCcEEEccCcccccccChhhc-----CCCCCC
Q 045861 92 LHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGT----IPSFIFNASKLSILGIRTNSFSGTIPSTIA-----NLRNLQ 162 (508)
Q Consensus 92 l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~----~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~-----~l~~L~ 162 (508)
..+|++|++++ |++++. ++..+..+++|++|++++|.+.......+. ......
T Consensus 83 ~~~L~~L~L~~------------------n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~ 144 (460)
T d1z7xw1 83 SCKIQKLSLQN------------------CCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLE 144 (460)
T ss_dssp TCCCCEEECTT------------------SCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCC
T ss_pred CCCCCEEECCC------------------CCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccc
Confidence 12344444444 444322 334566777888888888877643222221 122233
Q ss_pred EEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCC----ChhhhhcccccCeeEccCCcCccc----CChhhh
Q 045861 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL----PSSMGNLSTSLEYIYMPYCRRSGR----IPEEIG 234 (508)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~----~~~~~~~~~~L~~L~l~~~~~~~~----~~~~l~ 234 (508)
............. .......+.....++.+.++++...... ...+.........+.+..+..... ....+.
T Consensus 145 ~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~ 223 (460)
T d1z7xw1 145 KLQLEYCSLSAAS-CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 223 (460)
T ss_dssp EEECTTSCCBGGG-HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHH
T ss_pred cccccccccchhh-hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhccccccc
Confidence 4443333222110 0111123445566777777766544221 111222222445555555443321 112234
Q ss_pred cCCCCcEEEcccCcccc-----ccCccccCCCCCCcEEccCCcCccc----cchhhhCCCCCcEEEeeCceeeeeCCcc-
Q 045861 235 NLINLITMSLGINKLTG-----SIPISLGKLQKLQGLYLYKNKLEGS----IPDSLCNLGRLVELQFYDNKLFGSIPAC- 304 (508)
Q Consensus 235 ~l~~L~~L~l~~~~~~~-----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~~~~~~~~~- 304 (508)
..+.++.+++.++.+.. ...........++.+++++|.+... ....+...+.++.+++++|.+.......
T Consensus 224 ~~~~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l 303 (460)
T d1z7xw1 224 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLL 303 (460)
T ss_dssp HCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHH
T ss_pred ccccccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 45666667766665431 1122233455666666666665422 1122344556666666666553211111
Q ss_pred ----cCCCCCCCEEEcCCCcccccCCcc----ccCccCCcEEEccCCccccc----cCcccc-CCCCCcEEECCCCcCCC
Q 045861 305 ----IGKLSPLRNLLLHSNVLTYVIPST----FLSLRDILVFNFSSNSLNGS----LPLDIG-NLKVVVGIDLSRNNLSD 371 (508)
Q Consensus 305 ----~~~~~~L~~L~l~~n~~~~~~~~~----~~~~~~L~~L~L~~n~l~~~----~~~~~~-~l~~L~~L~l~~n~l~~ 371 (508)
....+.|+.+++++|.+....... +...++|++|+|++|.++.. ++..+. ..+.|++|++++|.+++
T Consensus 304 ~~~l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~ 383 (460)
T d1z7xw1 304 CETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSD 383 (460)
T ss_dssp HHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCH
T ss_pred hccccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCCh
Confidence 112345566666655554332211 12233455555555554321 111111 23345555555555543
Q ss_pred c----cchhhhcCCCCCEEECcCCccc
Q 045861 372 S----IPTVIGGLSNLAFFSLAYNKLQ 394 (508)
Q Consensus 372 ~----~~~~~~~l~~L~~L~L~~n~l~ 394 (508)
. +++.+..+++|++|++++|.++
T Consensus 384 ~~~~~l~~~l~~~~~L~~L~Ls~N~i~ 410 (460)
T d1z7xw1 384 SSCSSLAATLLANHSLRELDLSNNCLG 410 (460)
T ss_dssp HHHHHHHHHHHHCCCCCEEECCSSSCC
T ss_pred HHHHHHHHHHhcCCCCCEEECCCCcCC
Confidence 2 1222334455555555555544
|
| >d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Leucine rich effector protein YopM domain: Leucine rich effector protein YopM species: Yersinia pestis [TaxId: 632]
Probab=99.81 E-value=3.4e-17 Score=155.37 Aligned_cols=307 Identities=22% Similarity=0.221 Sum_probs=176.4
Q ss_pred CeecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCc
Q 045861 1 MDFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNN 80 (508)
Q Consensus 1 l~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 80 (508)
|||++++++ ++|+ ..++|++|++++|.++ .+|+. ..+|+.|++++|+++.. ++ + .+.|++|++++|.
T Consensus 43 LdLs~~~L~-~lp~----~~~~L~~L~Ls~N~l~-~lp~~---~~~L~~L~l~~n~l~~l-~~-l--p~~L~~L~L~~n~ 109 (353)
T d1jl5a_ 43 LELNNLGLS-SLPE----LPPHLESLVASCNSLT-ELPEL---PQSLKSLLVDNNNLKAL-SD-L--PPLLEYLGVSNNQ 109 (353)
T ss_dssp EECTTSCCS-CCCS----CCTTCSEEECCSSCCS-SCCCC---CTTCCEEECCSSCCSCC-CS-C--CTTCCEEECCSSC
T ss_pred EEeCCCCCC-CCCC----CCCCCCEEECCCCCCc-ccccc---hhhhhhhhhhhcccchh-hh-h--ccccccccccccc
Confidence 689999998 7884 4689999999999998 66764 46899999999998843 22 1 2469999999999
Q ss_pred cccCCchhccCCCCCCEeeCccccCCCC--CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCC
Q 045861 81 LIGEIPHEIGNLHNLEYLVLENNNFDGP--RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANL 158 (508)
Q Consensus 81 l~~~~~~~~~~l~~L~~L~L~~n~~~~~--~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l 158 (508)
+. .+|. ++.+++|++|+++++.+... ....+..+.+..+... ....+..++.++.+.+..+.+.. .+. ..
T Consensus 110 l~-~lp~-~~~l~~L~~L~l~~~~~~~~~~~~~~l~~l~~~~~~~~--~~~~l~~l~~l~~L~l~~n~~~~-~~~---~~ 181 (353)
T d1jl5a_ 110 LE-KLPE-LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLE--ELPELQNLPFLTAIYADNNSLKK-LPD---LP 181 (353)
T ss_dssp CS-SCCC-CTTCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCS--SCCCCTTCTTCCEEECCSSCCSS-CCC---CC
T ss_pred cc-cccc-hhhhccceeeccccccccccccccccccchhhcccccc--ccccccccccceecccccccccc-ccc---cc
Confidence 88 5553 68899999999999987754 3455666666555443 23445556666677766665542 111 11
Q ss_pred CCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCC
Q 045861 159 RNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLIN 238 (508)
Q Consensus 159 ~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~ 238 (508)
...+.+......+... ..+..++.|+.++++++..... +. ...+
T Consensus 182 ~~~~~l~~~~~~~~~~-------~~~~~l~~L~~l~l~~n~~~~~-~~----------------------------~~~~ 225 (353)
T d1jl5a_ 182 LSLESIVAGNNILEEL-------PELQNLPFLTTIYADNNLLKTL-PD----------------------------LPPS 225 (353)
T ss_dssp TTCCEEECCSSCCSSC-------CCCTTCTTCCEEECCSSCCSSC-CS----------------------------CCTT
T ss_pred cccccccccccccccc-------cccccccccccccccccccccc-cc----------------------------cccc
Confidence 2334444444333322 2234455666666666544321 11 1223
Q ss_pred CcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCC-CCCcEEEeeCceeeeeCCcccCCCCCCCEEEcC
Q 045861 239 LITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNL-GRLVELQFYDNKLFGSIPACIGKLSPLRNLLLH 317 (508)
Q Consensus 239 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~ 317 (508)
+..+.+..+.+... + ...+.+...++..+.+.+. ..+ ......++..+.+.+. ...+++|++|+++
T Consensus 226 l~~~~~~~~~~~~~-~---~~~~~l~~~~~~~~~~~~l-----~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~L~Ls 292 (353)
T d1jl5a_ 226 LEALNVRDNYLTDL-P---ELPQSLTFLDVSENIFSGL-----SELPPNLYYLNASSNEIRSL----CDLPPSLEELNVS 292 (353)
T ss_dssp CCEEECCSSCCSCC-C---CCCTTCCEEECCSSCCSEE-----SCCCTTCCEEECCSSCCSEE----CCCCTTCCEEECC
T ss_pred cccccccccccccc-c---ccccccccccccccccccc-----ccccchhcccccccCccccc----cccCCCCCEEECC
Confidence 33344443333211 1 1122333333333332210 011 1233344444433221 2234566777777
Q ss_pred CCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECc
Q 045861 318 SNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389 (508)
Q Consensus 318 ~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (508)
+|.+..+. . .+++|+.|++++|+++ .+|. .+++|++|++++|+++ .+|+. ..+|+.|.+.
T Consensus 293 ~N~l~~lp-~---~~~~L~~L~L~~N~L~-~l~~---~~~~L~~L~L~~N~L~-~lp~~---~~~L~~L~~~ 352 (353)
T d1jl5a_ 293 NNKLIELP-A---LPPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLR-EFPDI---PESVEDLRMN 352 (353)
T ss_dssp SSCCSCCC-C---CCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCS-SCCCC---CTTCCEEECC
T ss_pred CCccCccc-c---ccCCCCEEECCCCcCC-cccc---ccCCCCEEECcCCcCC-CCCcc---ccccCeeECc
Confidence 77666432 1 2456777777777776 3443 2456777788888776 44542 3456666654
|
| >d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Ribonuclease inhibitor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.79 E-value=5.7e-21 Score=188.68 Aligned_cols=381 Identities=19% Similarity=0.137 Sum_probs=189.2
Q ss_pred CCcEEEcccCCCCCCC-CcccCCCCCCCeEEccCCcccc----CCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccC
Q 045861 46 ELIAISLSHNQLTGLI-PRDIGNLTSARALLLGNNNLIG----EIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLER 120 (508)
Q Consensus 46 ~L~~L~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~ 120 (508)
+|+.||++++++++.. .+.+..++++|.|+|++|.++. .+..++..+++|++|+|++|.++..+
T Consensus 3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~----------- 71 (460)
T d1z7xw1 3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG----------- 71 (460)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH-----------
T ss_pred CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHH-----------
Confidence 5677888888776532 2334567777888888877663 22344566777777777776553100
Q ss_pred CcccccCCcccc-CCCCCcEEEccCcccccc----cChhhcCCCCCCEEeCCCCcCcCCCCCCcccccc-cCCCCCCEEE
Q 045861 121 NNFSGTIPSFIF-NASKLSILGIRTNSFSGT----IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSL-RNCRNLKVID 194 (508)
Q Consensus 121 ~~~~~~~~~~~~-~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l-~~~~~L~~L~ 194 (508)
+. .+...+. ...+|++|++++|.++.. ++.++..+++|++|++++|.+...+.. .....+ ..........
T Consensus 72 --~~-~l~~~l~~~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~-~l~~~l~~~~~~~~~~~ 147 (460)
T d1z7xw1 72 --VH-CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQ-LLCEGLLDPQCRLEKLQ 147 (460)
T ss_dssp --HH-HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHH-HHHHHHTSTTCCCCEEE
T ss_pred --HH-HHHHHHhcCCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhh-hhhhccccccccccccc
Confidence 00 1122222 234789999999888643 345566788899999988876542110 000111 1122233444
Q ss_pred ccCccCccCCC----hhhhhcccccCeeEccCCcCcccC----Chhh-hcCCCCcEEEcccCccccc----cCccccCCC
Q 045861 195 LTGNQLHGILP----SSMGNLSTSLEYIYMPYCRRSGRI----PEEI-GNLINLITMSLGINKLTGS----IPISLGKLQ 261 (508)
Q Consensus 195 l~~~~~~~~~~----~~~~~~~~~L~~L~l~~~~~~~~~----~~~l-~~l~~L~~L~l~~~~~~~~----~~~~l~~~~ 261 (508)
........... ..+... ..++.+.++++...... ...+ ........+++..+.+... ....+...+
T Consensus 148 ~~~~~~~~~~~~~~~~~l~~~-~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~ 226 (460)
T d1z7xw1 148 LEYCSLSAASCEPLASVLRAK-PDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKA 226 (460)
T ss_dssp CTTSCCBGGGHHHHHHHHHHC-TTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCT
T ss_pred ccccccchhhhcccccccccc-cccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccc
Confidence 43333221111 111111 25566666655433210 0111 1223445566655544321 112233456
Q ss_pred CCCcEEccCCcCccc-----cchhhhCCCCCcEEEeeCceeeee----CCcccCCCCCCCEEEcCCCcccccCCcc----
Q 045861 262 KLQGLYLYKNKLEGS-----IPDSLCNLGRLVELQFYDNKLFGS----IPACIGKLSPLRNLLLHSNVLTYVIPST---- 328 (508)
Q Consensus 262 ~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~L~~n~~~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~---- 328 (508)
.++.+.+.++.+... .........+++.+++++|.+... ....+...+.++.+++++|.+.......
T Consensus 227 ~~~~l~~~~n~~~~~~~~~~~~~~~~~~~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~ 306 (460)
T d1z7xw1 227 SLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET 306 (460)
T ss_dssp TCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred cccccchhhccccccccchhhcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence 666666666654321 122233455666666666655322 1122334566666666666654321111
Q ss_pred -ccCccCCcEEEccCCccccccCc----cccCCCCCcEEECCCCcCCCccc----hhhh-cCCCCCEEECcCCccccc--
Q 045861 329 -FLSLRDILVFNFSSNSLNGSLPL----DIGNLKVVVGIDLSRNNLSDSIP----TVIG-GLSNLAFFSLAYNKLQGS-- 396 (508)
Q Consensus 329 -~~~~~~L~~L~L~~n~l~~~~~~----~~~~l~~L~~L~l~~n~l~~~~~----~~~~-~l~~L~~L~L~~n~l~~~-- 396 (508)
......|+.+++++|.++..... .+...++|++|++++|++.+... ..+. ..+.|++|++++|.+++.
T Consensus 307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~ 386 (460)
T d1z7xw1 307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC 386 (460)
T ss_dssp HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHH
Confidence 12234566666666665533211 22334456666666666653221 2222 344566666666666532
Q ss_pred --CcccccCCCCCCEEECCCCcccccCccc----cc-CCCCCCEEeCCCCcce
Q 045861 397 --IPESLGDLRSLEFLDLSNNSFSGFIPRS----FE-KLLYLEYLNLSFNRLK 442 (508)
Q Consensus 397 --~~~~~~~l~~L~~L~L~~n~~~~~~~~~----l~-~l~~L~~L~l~~n~l~ 442 (508)
++..+..+++|++|+|++|+++...... +. ....|+.|++.+|.+.
T Consensus 387 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~ 439 (460)
T d1z7xw1 387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWS 439 (460)
T ss_dssp HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCC
T ss_pred HHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCC
Confidence 2233444566666666666665422222 21 2234666666666654
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.75 E-value=1.6e-17 Score=147.05 Aligned_cols=189 Identities=24% Similarity=0.287 Sum_probs=110.3
Q ss_pred hhcCCCCcEEEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCC
Q 045861 233 IGNLINLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLR 312 (508)
Q Consensus 233 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~ 312 (508)
+..+.+|+.|++.+|.++.. ..+..+++|++|++++|.+.+.. .+..+++++++++++|.++. + ..+..+++|+
T Consensus 37 ~~~l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~ 110 (227)
T d1h6ua2 37 QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPLKN-V-SAIAGLQSIK 110 (227)
T ss_dssp HHHHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCCSC-C-GGGTTCTTCC
T ss_pred HHHcCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccccc-c-cccccccccc
Confidence 34455666666666666532 24566666666666666665332 25666666666666665542 2 2355666666
Q ss_pred EEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCc
Q 045861 313 NLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK 392 (508)
Q Consensus 313 ~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 392 (508)
.++++++..... ..+...+.+..+.++++.+.... .+...++|+.|++++|.+.+.. .++++++|++|++++|+
T Consensus 111 ~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~Ls~n~ 184 (227)
T d1h6ua2 111 TLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDLT--PLANLSKLTTLKADDNK 184 (227)
T ss_dssp EEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSC
T ss_pred cccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccch--hhcccccceecccCCCc
Confidence 666666655433 22445556666666666654222 2455566666666666665322 25566666777776666
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCC
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 437 (508)
+++ ++ .+.++++|++|++++|++++.. .+.++++|++|+++
T Consensus 185 l~~-l~-~l~~l~~L~~L~Ls~N~lt~i~--~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 185 ISD-IS-PLASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLT 225 (227)
T ss_dssp CCC-CG-GGGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEE
T ss_pred cCC-Ch-hhcCCCCCCEEECcCCcCCCCc--ccccCCCCCEEEee
Confidence 653 22 2566666777777776666443 25666666666664
|
| >d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin H species: Listeria monocytogenes [TaxId: 1639]
Probab=99.74 E-value=2e-17 Score=146.39 Aligned_cols=202 Identities=19% Similarity=0.312 Sum_probs=163.4
Q ss_pred EEcccCccccccCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcc
Q 045861 242 MSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVL 321 (508)
Q Consensus 242 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~ 321 (508)
++++.+.+++. ..+..+.+|++|++.+|.+.+ + ..+..+++|++|++++|.+++.. .+..+++++.+++++|.+
T Consensus 24 ~~l~~~~~~d~--~~~~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~--~l~~l~~l~~l~~~~n~~ 97 (227)
T d1h6ua2 24 IAAGKSNVTDT--VTQADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLA--PLKNLTKITELELSGNPL 97 (227)
T ss_dssp HHTTCSSTTSE--ECHHHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCCSCCEEECCSCCC
T ss_pred HHhCCCCcCCc--CCHHHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeeccc--cccccccccccccccccc
Confidence 44555555533 245667899999999999984 4 46889999999999999986543 388899999999999988
Q ss_pred cccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccc
Q 045861 322 TYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESL 401 (508)
Q Consensus 322 ~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 401 (508)
+.. ..+..+++|++++++++..... ..+...+.+..+.++++.+.... .+..+++|++|++++|.+++. ..+
T Consensus 98 ~~i--~~l~~l~~L~~l~l~~~~~~~~--~~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~n~~~~~--~~l 169 (227)
T d1h6ua2 98 KNV--SAIAGLQSIKTLDLTSTQITDV--TPLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIGNAQVSDL--TPL 169 (227)
T ss_dssp SCC--GGGTTCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECCSSCCCCC--GGG
T ss_pred ccc--cccccccccccccccccccccc--chhccccchhhhhchhhhhchhh--hhccccccccccccccccccc--hhh
Confidence 754 3578899999999999987643 34567889999999999987433 367889999999999999743 348
Q ss_pred cCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCccccc
Q 045861 402 GDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFM 460 (508)
Q Consensus 402 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~ 460 (508)
.++++|+.|++++|++++.. .+.++++|++|++++|+++ .+|....+.+|+.++++
T Consensus 170 ~~l~~L~~L~Ls~n~l~~l~--~l~~l~~L~~L~Ls~N~lt-~i~~l~~l~~L~~L~ls 225 (227)
T d1h6ua2 170 ANLSKLTTLKADDNKISDIS--PLASLPNLIEVHLKNNQIS-DVSPLANTSNLFIVTLT 225 (227)
T ss_dssp TTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECTTSCCC-BCGGGTTCTTCCEEEEE
T ss_pred cccccceecccCCCccCCCh--hhcCCCCCCEEECcCCcCC-CCcccccCCCCCEEEee
Confidence 89999999999999998643 4889999999999999998 56665677788887775
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.73 E-value=6e-18 Score=145.45 Aligned_cols=176 Identities=22% Similarity=0.273 Sum_probs=111.5
Q ss_pred EEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccc-cCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCC
Q 045861 289 ELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTY-VIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN 367 (508)
Q Consensus 289 ~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n 367 (508)
.++.+++.++ .+|..+ .+++++|++++|.++. .....|..+++|++|++++|.+....+..+..++.|++|++++|
T Consensus 12 ~v~Cs~~~L~-~iP~~l--p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls~N 88 (192)
T d1w8aa_ 12 TVDCTGRGLK-EIPRDI--PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp EEECTTSCCS-SCCSCC--CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred EEEEeCCCcC-ccCCCC--CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeeccc
Confidence 4455555443 333332 2466666777766654 33455666777777777777777666667777777777777777
Q ss_pred cCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCC
Q 045861 368 NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPS 447 (508)
Q Consensus 368 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~ 447 (508)
++....+.+|.++++|++|+|++|.++...+++|..+++|++|+|++|.+.......+ -...++.+.+..+.+.+..|.
T Consensus 89 ~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~-~~~~l~~~~l~~~~~~c~~p~ 167 (192)
T d1w8aa_ 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPS 167 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSST
T ss_pred cccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHH-HhhhhhhhcccCCCeEeCCCh
Confidence 7776666677777777777777777776666777777777788887777764322111 012245556666776655554
Q ss_pred ccccCCCCcccccCCCCCCCCCC
Q 045861 448 GESFANFSDNSFMGNSFLCGSPN 470 (508)
Q Consensus 448 ~~~~~~l~~l~l~~n~~~c~~~~ 470 (508)
.+..+...++..|.+.|.++.
T Consensus 168 --~l~~~~l~~L~~n~l~C~~~~ 188 (192)
T d1w8aa_ 168 --KVRDVQIKDLPHSEFKCSSEN 188 (192)
T ss_dssp --TTTTSBGGGSCTTTCCCCCC-
T ss_pred --hhcCCEeeecCHhhCcCCCCC
Confidence 345556667777777777653
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.73 E-value=1.8e-17 Score=148.48 Aligned_cols=198 Identities=18% Similarity=0.166 Sum_probs=99.3
Q ss_pred CCcEEEcccCccccccCccccCCCCCCcEEccCCcCcccc-chhhhCCCCCcEEEeeC-ceeeeeCCcccCCCCCCCEEE
Q 045861 238 NLITMSLGINKLTGSIPISLGKLQKLQGLYLYKNKLEGSI-PDSLCNLGRLVELQFYD-NKLFGSIPACIGKLSPLRNLL 315 (508)
Q Consensus 238 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~~~l~~L~~L~L~~-n~~~~~~~~~~~~~~~L~~L~ 315 (508)
++++|++++|.++...+.+|.++++|++|++++|.+.+.+ +..|..+++++++.+.. +.+....+..+..+++|++++
T Consensus 30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~~L~~l~ 109 (242)
T d1xwdc1 30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLL 109 (242)
T ss_dssp CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCTTCCEEE
T ss_pred CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccccccccc
Confidence 4555555555555433344555555555555555544322 23455555555555543 344444455555556666666
Q ss_pred cCCCcccccCCc-cccCccCCcEEEccCCccccccCccccCCC-CCcEEECCCCcCCCccchhhhcCCCCCEE-ECcCCc
Q 045861 316 LHSNVLTYVIPS-TFLSLRDILVFNFSSNSLNGSLPLDIGNLK-VVVGIDLSRNNLSDSIPTVIGGLSNLAFF-SLAYNK 392 (508)
Q Consensus 316 l~~n~~~~~~~~-~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~l~~~~~~~~~~l~~L~~L-~L~~n~ 392 (508)
+++|.+....+. .+..+..+..+...++.+....+..+..++ .++.+++++|++....+..+. .+++.++ .+++|.
T Consensus 110 l~~~~l~~~~~~~~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l~~n~l~~i~~~~~~-~~~l~~~~~l~~n~ 188 (242)
T d1xwdc1 110 ISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFN-GTQLDELNLSDNNN 188 (242)
T ss_dssp EESCCCCSCCCCTTTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCCEECTTTTT-TCCEEEEECTTCTT
T ss_pred cchhhhcccccccccccccccccccccccccccccccccccccccceeeeccccccccccccccc-chhhhccccccccc
Confidence 666555433221 122334444444455555544444444432 455566666666533333333 2333333 445555
Q ss_pred ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeC
Q 045861 393 LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNL 436 (508)
Q Consensus 393 l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l 436 (508)
++...+..|.++++|++|++++|+++...+..|.+++.|+.+++
T Consensus 189 l~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~l~~ 232 (242)
T d1xwdc1 189 LEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARST 232 (242)
T ss_dssp CCCCCTTTTTTSCCCSEEECTTSCCCCCCSSSCTTCCEEESSSE
T ss_pred cccccHHHhcCCCCCCEEECCCCcCCccCHHHHcCCcccccCcC
Confidence 65333445666666666666666666554455555555554443
|
| >d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Follicle-stimulating hormone receptor species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.72 E-value=2.5e-17 Score=147.49 Aligned_cols=103 Identities=20% Similarity=0.256 Sum_probs=81.9
Q ss_pred eecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCC-CCCcccCCCCCCCeEEccC-C
Q 045861 2 DFANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTG-LIPRDIGNLTSARALLLGN-N 79 (508)
Q Consensus 2 ~l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~L~~-n 79 (508)
++++++++ ++|.++ .+++++|++++|.++...+.+|.++++|++|++++|.+.. ..+.+|.+++.++++.+.. +
T Consensus 14 ~c~~~~l~-~iP~~l---~~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n 89 (242)
T d1xwdc1 14 LCQESKVT-EIPSDL---PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKAN 89 (242)
T ss_dssp EEESCSCS-SCCSCS---CSCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCT
T ss_pred EEeCCCCC-CcCCCC---CCCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccc
Confidence 56777888 888776 3578999999999986556678899999999999998765 3456788899999998764 5
Q ss_pred ccccCCchhccCCCCCCEeeCccccCCCC
Q 045861 80 NLIGEIPHEIGNLHNLEYLVLENNNFDGP 108 (508)
Q Consensus 80 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~ 108 (508)
.+....+..|.++++|+++++++|.+...
T Consensus 90 ~l~~~~~~~~~~l~~L~~l~l~~~~l~~~ 118 (242)
T d1xwdc1 90 NLLYINPEAFQNLPNLQYLLISNTGIKHL 118 (242)
T ss_dssp TCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred cccccccccccccccccccccchhhhccc
Confidence 67666777889999999999998887643
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=9.7e-17 Score=139.82 Aligned_cols=157 Identities=24% Similarity=0.373 Sum_probs=91.8
Q ss_pred ecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc
Q 045861 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82 (508)
Q Consensus 3 l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 82 (508)
++.+.+++.++..- +.+|+.|+++++.+... + .+..+++|++|++++|++++. ..++.+++|++|++++|++.
T Consensus 31 l~~~~~~~~~~~~~---L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l--~~~~~l~~L~~L~l~~n~i~ 103 (210)
T d1h6ta2 31 LKKKSVTDAVTQNE---LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI--KPLANLKNLGWLFLDENKVK 103 (210)
T ss_dssp TTCSCTTSEECHHH---HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCC
T ss_pred hCcCccCCccCHHH---hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc--cccccCcccccccccccccc
Confidence 34455555554322 45777888888877643 2 367788888888888887754 24677788888888888776
Q ss_pred cCCchhccCCCCCCEeeCccccCCCC----CCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCC
Q 045861 83 GEIPHEIGNLHNLEYLVLENNNFDGP----RHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANL 158 (508)
Q Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~~~~~----~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l 158 (508)
.++ .+.++++|+.|++++|.+... .++.++.+++++|.+++ +..+..+++|+++++++|++++. + .++.+
T Consensus 104 -~l~-~l~~l~~L~~L~l~~~~~~~~~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l 177 (210)
T d1h6ta2 104 -DLS-SLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGL 177 (210)
T ss_dssp -CGG-GGTTCTTCCEEECTTSCCCCCGGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTC
T ss_pred -ccc-cccccccccccccccccccccccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCC
Confidence 333 577778888888877766533 33444555555444431 22334444455555555544421 1 14444
Q ss_pred CCCCEEeCCCCcCc
Q 045861 159 RNLQWLDLSFNYLT 172 (508)
Q Consensus 159 ~~L~~L~l~~n~~~ 172 (508)
++|++|++++|.++
T Consensus 178 ~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 178 TKLQNLYLSKNHIS 191 (210)
T ss_dssp TTCCEEECCSSCCC
T ss_pred CCCCEEECCCCCCC
Confidence 45555555544443
|
| >d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: Slit species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=99.71 E-value=1.1e-17 Score=143.68 Aligned_cols=156 Identities=24% Similarity=0.259 Sum_probs=120.8
Q ss_pred CCEEEcCCCcccccCCccccCccCCcEEEccCCcccc-ccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECc
Q 045861 311 LRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNG-SLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLA 389 (508)
Q Consensus 311 L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~ 389 (508)
.+.++.+++.++.++... .+++++|+|++|++++ ..+..|..+++|+.|++++|.+....+..|..+++|++|+++
T Consensus 10 ~~~v~Cs~~~L~~iP~~l---p~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L~~L~Ls 86 (192)
T d1w8aa_ 10 GTTVDCTGRGLKEIPRDI---PLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG 86 (192)
T ss_dssp TTEEECTTSCCSSCCSCC---CTTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CCEEEEeCCCcCccCCCC---CCCCCEEEeCCCCCcccccccccCCCceEeeeeccccccccccccccccccccceeeec
Confidence 357888888888654432 2678889999998875 345667888889999999998888778888888899999999
Q ss_pred CCcccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCCCCcceecCCCccccCCCCcccccCCCCCCCCC
Q 045861 390 YNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKGEIPSGESFANFSDNSFMGNSFLCGSP 469 (508)
Q Consensus 390 ~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~l~l~~n~~~c~~~ 469 (508)
+|+++...+.+|.++++|++|+|++|++++..+++|..+++|++|++++|++.+..+.......++...+..+...|.-|
T Consensus 87 ~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~~~~l~~~~l~~~~~~c~~p 166 (192)
T d1w8aa_ 87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAP 166 (192)
T ss_dssp SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSS
T ss_pred cccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHHhhhhhhhcccCCCeEeCCC
Confidence 99888777788888889999999999998888888888888999999998887544433333445566667776677655
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.71 E-value=1.9e-16 Score=136.68 Aligned_cols=162 Identities=27% Similarity=0.403 Sum_probs=101.8
Q ss_pred ecCCCCCCCCchhhhhCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccc
Q 045861 3 FANNTLTGSLPDDMCQHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLI 82 (508)
Q Consensus 3 l~~n~l~~~l~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 82 (508)
++.+.+++.++. +.++++++|+++++.+.. + +.+..+++|++|++++|++++.. .++++++|++|++++|.+.
T Consensus 25 l~~~~~~~~~~~---~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~--~l~~l~~L~~L~l~~n~~~ 97 (199)
T d2omxa2 25 LGKTNVTDTVSQ---TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDIT--PLKNLTKLVDILMNNNQIA 97 (199)
T ss_dssp TTCSSTTSEECH---HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCC
T ss_pred hCCCCCCCccCH---HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCcc--cccCCcccccccccccccc
Confidence 445566644432 235678888888888773 3 34677888888888888887542 3778888888888888765
Q ss_pred cCCchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccChhhcCCCCCC
Q 045861 83 GEIPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQ 162 (508)
Q Consensus 83 ~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~ 162 (508)
.++ .+.++++|+.|+++++.+... ..+..+++|+.+++++|++.. + +.+..+++|+
T Consensus 98 -~~~-~l~~l~~L~~L~l~~~~~~~~--------------------~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~ 153 (199)
T d2omxa2 98 -DIT-PLANLTNLTGLTLFNNQITDI--------------------DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQ 153 (199)
T ss_dssp -CCG-GGTTCTTCSEEECCSSCCCCC--------------------GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCS
T ss_pred -ccc-ccccccccccccccccccccc--------------------cccchhhhhHHhhhhhhhhcc-c-cccccccccc
Confidence 333 477778888888777765432 234555666666666665542 2 2355566666
Q ss_pred EEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCcc
Q 045861 163 WLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHG 202 (508)
Q Consensus 163 ~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 202 (508)
.|++.+|.+..+ ..+.++++|+.|++++|.+++
T Consensus 154 ~L~l~~n~l~~l-------~~l~~l~~L~~L~ls~N~i~~ 186 (199)
T d2omxa2 154 QLNFSSNQVTDL-------KPLANLTTLERLDISSNKVSD 186 (199)
T ss_dssp EEECCSSCCCCC-------GGGTTCTTCCEEECCSSCCCC
T ss_pred ccccccccccCC-------ccccCCCCCCEEECCCCCCCC
Confidence 666666655432 234555666666666666553
|
| >d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.2e-16 Score=139.15 Aligned_cols=166 Identities=22% Similarity=0.298 Sum_probs=121.8
Q ss_pred CCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEE
Q 045861 259 KLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVF 338 (508)
Q Consensus 259 ~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L 338 (508)
.+.+|++|++++|.+... ..+..+++|++|++++|++++.. .+..+++|++|++++|+++... .+..+++|+.+
T Consensus 44 ~L~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~L~~n~i~~l~--~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L 117 (210)
T d1h6ta2 44 ELNSIDQIIANNSDIKSV--QGIQYLPNVTKLFLNGNKLTDIK--PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSL 117 (210)
T ss_dssp HHHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCG--GGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEE
T ss_pred HhcCccEEECcCCCCCCc--hhHhhCCCCCEEeCCCccccCcc--ccccCccccccccccccccccc--ccccccccccc
Confidence 456788888888888743 24677888888888888876432 3567888888888888887543 46777888888
Q ss_pred EccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCccc
Q 045861 339 NFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFS 418 (508)
Q Consensus 339 ~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~ 418 (508)
++++|.+.. + ..+..++.++.+++++|.+.+ +..+..+++|+.+++++|.+++. + .+.++++|++|++++|+++
T Consensus 118 ~l~~~~~~~-~-~~l~~l~~l~~l~~~~n~l~~--~~~~~~l~~L~~l~l~~n~l~~i-~-~l~~l~~L~~L~Ls~N~i~ 191 (210)
T d1h6ta2 118 SLEHNGISD-I-NGLVHLPQLESLYLGNNKITD--ITVLSRLTKLDTLSLEDNQISDI-V-PLAGLTKLQNLYLSKNHIS 191 (210)
T ss_dssp ECTTSCCCC-C-GGGGGCTTCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCC
T ss_pred ccccccccc-c-ccccccccccccccccccccc--ccccccccccccccccccccccc-c-cccCCCCCCEEECCCCCCC
Confidence 888887763 2 346677788888888888774 23466778888888888888743 3 3677888888888888887
Q ss_pred ccCcccccCCCCCCEEeCCC
Q 045861 419 GFIPRSFEKLLYLEYLNLSF 438 (508)
Q Consensus 419 ~~~~~~l~~l~~L~~L~l~~ 438 (508)
+. + .+.++++|++|++++
T Consensus 192 ~l-~-~l~~l~~L~~L~Ls~ 209 (210)
T d1h6ta2 192 DL-R-ALAGLKNLDVLELFS 209 (210)
T ss_dssp BC-G-GGTTCTTCSEEEEEE
T ss_pred CC-h-hhcCCCCCCEEEccC
Confidence 43 3 577788888887753
|
| >d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Internalin LRR domain domain: Internalin B species: Listeria monocytogenes [TaxId: 1639]
Probab=99.69 E-value=1.9e-16 Score=136.66 Aligned_cols=163 Identities=26% Similarity=0.420 Sum_probs=96.0
Q ss_pred cCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcE
Q 045861 258 GKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILV 337 (508)
Q Consensus 258 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~ 337 (508)
..++++++|+++++.+.. + ..+..+++|++|++++|++++..+ +..+++|++|++++|.+.... .+..++.|++
T Consensus 37 ~~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~ 110 (199)
T d2omxa2 37 TDLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTG 110 (199)
T ss_dssp HHHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSE
T ss_pred HHhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--cccccccccc
Confidence 345677777777777663 2 345666777777777776653322 566677777777776665432 2556666666
Q ss_pred EEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcc
Q 045861 338 FNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSF 417 (508)
Q Consensus 338 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~ 417 (508)
+++++|..... ..+..+++|+.|++++|++.. + ..+..+++|++|++++|.+++. ..+.++++|++|++++|++
T Consensus 111 L~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~l--~~l~~l~~L~~L~ls~N~i 184 (199)
T d2omxa2 111 LTLFNNQITDI--DPLKNLTNLNRLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTDL--KPLANLTTLERLDISSNKV 184 (199)
T ss_dssp EECCSSCCCCC--GGGTTCTTCSEEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCCC--GGGTTCTTCCEEECCSSCC
T ss_pred ccccccccccc--cccchhhhhHHhhhhhhhhcc-c-ccccccccccccccccccccCC--ccccCCCCCCEEECCCCCC
Confidence 66666665532 234556666666666666652 2 2355566666666666666532 2355666666666666666
Q ss_pred cccCcccccCCCCCCEE
Q 045861 418 SGFIPRSFEKLLYLEYL 434 (508)
Q Consensus 418 ~~~~~~~l~~l~~L~~L 434 (508)
++. ..+.++++|++|
T Consensus 185 ~~i--~~l~~L~~L~~L 199 (199)
T d2omxa2 185 SDI--SVLAKLTNLESL 199 (199)
T ss_dssp CCC--GGGGGCTTCSEE
T ss_pred CCC--ccccCCCCCCcC
Confidence 542 235555655554
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.60 E-value=8.6e-16 Score=140.36 Aligned_cols=62 Identities=18% Similarity=0.090 Sum_probs=32.1
Q ss_pred hcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCC-cccccCcccccCCCCCCEEeCCCC
Q 045861 378 GGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNN-SFSGFIPRSFEKLLYLEYLNLSFN 439 (508)
Q Consensus 378 ~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n-~~~~~~~~~l~~l~~L~~L~l~~n 439 (508)
..+++|++|++++|. +++.....+..+++|++|++++| .+++.....+.++++|++|++++|
T Consensus 172 ~~~~~L~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~ 235 (284)
T d2astb2 172 RRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI 235 (284)
T ss_dssp HHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS
T ss_pred cccccccccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCC
Confidence 345555555555542 44444444555555555555554 344433344555555555555555
|
| >d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Cyclin A/CDK2-associated p19, Skp2 domain: Cyclin A/CDK2-associated p19, Skp2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.57 E-value=1.2e-15 Score=139.45 Aligned_cols=83 Identities=22% Similarity=0.293 Sum_probs=44.7
Q ss_pred CCCEEEccCCccccc-CCccccCCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCc-CcCCCCCCcccccccCCCC
Q 045861 112 NLERLYLERNNFSGT-IPSFIFNASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNY-LTSSTSELSFLSSLRNCRN 189 (508)
Q Consensus 112 ~L~~L~l~~~~~~~~-~~~~~~~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~-~~~~~~~~~~~~~l~~~~~ 189 (508)
+|++|++++|.++.. +...+..+++|++|+++++.+++..+..++.+++|++|+++++. ++. ......+..+++
T Consensus 47 ~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd----~~l~~l~~~~~~ 122 (284)
T d2astb2 47 RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSE----FALQTLLSSCSR 122 (284)
T ss_dssp CCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCH----HHHHHHHHHCTT
T ss_pred CCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccc----cccchhhHHHHh
Confidence 344444444433322 23335566777777777777665556666667777777776643 221 011112345566
Q ss_pred CCEEEccCc
Q 045861 190 LKVIDLTGN 198 (508)
Q Consensus 190 L~~L~l~~~ 198 (508)
|++|+++++
T Consensus 123 L~~L~ls~c 131 (284)
T d2astb2 123 LDELNLSWC 131 (284)
T ss_dssp CCEEECCCC
T ss_pred ccccccccc
Confidence 777777664
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.55 E-value=9e-16 Score=144.80 Aligned_cols=262 Identities=18% Similarity=0.186 Sum_probs=141.4
Q ss_pred cChhhcCCCCCCEEeCCCCcCcCCCCCCcccccccCCCCCCEEEccCccCccCC---ChhhhhcccccCeeEccCCcCcc
Q 045861 151 IPSTIANLRNLQWLDLSFNYLTSSTSELSFLSSLRNCRNLKVIDLTGNQLHGIL---PSSMGNLSTSLEYIYMPYCRRSG 227 (508)
Q Consensus 151 ~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~---~~~~~~~~~~L~~L~l~~~~~~~ 227 (508)
+...+.....+++|++++|.+.... ...+...+...++|+.+.++++...... +..+.
T Consensus 23 l~~~L~~~~~l~~L~Ls~n~i~~~~-~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~------------------ 83 (344)
T d2ca6a1 23 VFAVLLEDDSVKEIVLSGNTIGTEA-ARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALR------------------ 83 (344)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHH-HHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHH------------------
T ss_pred HHHHHhhCCCCCEEECcCCcCCHHH-HHHHHHHHHhCCCCCEEECCCCcccccccccchHHH------------------
Confidence 4445666777888888877654311 0111234666677777777765433111 11111
Q ss_pred cCChhhhcCCCCcEEEcccCccccc----cCccccCCCCCCcEEccCCcCccccchhhhCCCCCcEEEeeCceeeeeCCc
Q 045861 228 RIPEEIGNLINLITMSLGINKLTGS----IPISLGKLQKLQGLYLYKNKLEGSIPDSLCNLGRLVELQFYDNKLFGSIPA 303 (508)
Q Consensus 228 ~~~~~l~~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~ 303 (508)
.+...+..+++|+.|++++|.+... +...+..+++|++|++++|.+.......++.. +..+ ....
T Consensus 84 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--l~~~---------~~~~ 152 (344)
T d2ca6a1 84 LLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--LQEL---------AVNK 152 (344)
T ss_dssp HHHHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--HHHH---------HHHH
T ss_pred HHHHHHhhCCCcccccccccccccccccchhhhhcccccchheeccccccccccccccccc--cccc---------cccc
Confidence 1123355567777788877776533 22334456677777777776542211111100 0000 0000
Q ss_pred ccCCCCCCCEEEcCCCcccccCC----ccccCccCCcEEEccCCccccc-----cCccccCCCCCcEEECCCCcCCCc--
Q 045861 304 CIGKLSPLRNLLLHSNVLTYVIP----STFLSLRDILVFNFSSNSLNGS-----LPLDIGNLKVVVGIDLSRNNLSDS-- 372 (508)
Q Consensus 304 ~~~~~~~L~~L~l~~n~~~~~~~----~~~~~~~~L~~L~L~~n~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~-- 372 (508)
.....+.|+.+.+++|.+..... ..+..++.|++|++++|.++.. +...+...++|+.|++++|.++..
T Consensus 153 ~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~ 232 (344)
T d2ca6a1 153 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGS 232 (344)
T ss_dssp HHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHH
T ss_pred ccccCcccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccc
Confidence 11233455556665555443211 1233455666666666665421 223455667777777777776543
Q ss_pred --cchhhhcCCCCCEEECcCCcccccCcc----ccc--CCCCCCEEECCCCcccccC----ccccc-CCCCCCEEeCCCC
Q 045861 373 --IPTVIGGLSNLAFFSLAYNKLQGSIPE----SLG--DLRSLEFLDLSNNSFSGFI----PRSFE-KLLYLEYLNLSFN 439 (508)
Q Consensus 373 --~~~~~~~l~~L~~L~L~~n~l~~~~~~----~~~--~l~~L~~L~L~~n~~~~~~----~~~l~-~l~~L~~L~l~~n 439 (508)
+...+..+++|++|++++|.+++.... .+. ..+.|++|++++|+++... ...+. +.+.|++|++++|
T Consensus 233 ~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N 312 (344)
T d2ca6a1 233 SALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGN 312 (344)
T ss_dssp HHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTS
T ss_pred ccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCC
Confidence 234456777888888888877653222 222 2356888888888876532 23332 4677888888888
Q ss_pred cce
Q 045861 440 RLK 442 (508)
Q Consensus 440 ~l~ 442 (508)
++.
T Consensus 313 ~~~ 315 (344)
T d2ca6a1 313 RFS 315 (344)
T ss_dssp BSC
T ss_pred cCC
Confidence 875
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.55 E-value=6.7e-15 Score=121.66 Aligned_cols=127 Identities=20% Similarity=0.179 Sum_probs=77.5
Q ss_pred hCCCCCcEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCE
Q 045861 18 QHLPRLQALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEY 97 (508)
Q Consensus 18 ~~~~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 97 (508)
.++.++++|++++|.|+ .++..+..+++|++|++++|+++.. +.|..+++|++|++++|++....+..+..+++|++
T Consensus 15 ~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~ 91 (162)
T d1a9na_ 15 TNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTE 91 (162)
T ss_dssp ECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCE
T ss_pred cCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCcccccccccccc
Confidence 45667777777777776 3455556677777777777777644 35667777777777777776444444566677777
Q ss_pred eeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccCh----hhcCCCCCCEEe
Q 045861 98 LVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIPS----TIANLRNLQWLD 165 (508)
Q Consensus 98 L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~----~~~~l~~L~~L~ 165 (508)
|++++|.+... .....+..+++|++|++++|.++. .+. .+..+++|+.|+
T Consensus 92 L~L~~N~i~~~-----------------~~l~~l~~l~~L~~L~l~~N~i~~-~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 92 LILTNNSLVEL-----------------GDLDPLASLKSLTYLCILRNPVTN-KKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp EECCSCCCCCG-----------------GGGGGGGGCTTCCEEECCSSGGGG-STTHHHHHHHHCTTCSEET
T ss_pred ceecccccccc-----------------ccccccccccccchhhcCCCcccc-ccchHHHHHHHCCCcCeeC
Confidence 77776665511 011345556666666666666652 221 345556666554
|
| >d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: U2A'-like domain: Splicesomal U2A' protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.53 E-value=1.3e-14 Score=119.88 Aligned_cols=126 Identities=18% Similarity=0.164 Sum_probs=69.8
Q ss_pred CCCCCCEEEcCCCcccccCCccccCccCCcEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEE
Q 045861 307 KLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFF 386 (508)
Q Consensus 307 ~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L 386 (508)
.+..+++|++++|.++.+ +..+..+++|+.|++++|.++. ++ .+..+++|++|++++|++....+..+..+++|+.|
T Consensus 16 n~~~lr~L~L~~n~I~~i-~~~~~~l~~L~~L~Ls~N~i~~-l~-~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~~L 92 (162)
T d1a9na_ 16 NAVRDRELDLRGYKIPVI-ENLGATLDQFDAIDFSDNEIRK-LD-GFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 92 (162)
T ss_dssp CTTSCEEEECTTSCCCSC-CCGGGGTTCCSEEECCSSCCCE-EC-CCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CcCcCcEEECCCCCCCcc-CccccccccCCEEECCCCCCCc-cC-CcccCcchhhhhcccccccCCCccccccccccccc
Confidence 344555555555555544 2334455556666666666552 22 35556666666666666664444445556666666
Q ss_pred ECcCCcccccC-cccccCCCCCCEEECCCCcccccCc---ccccCCCCCCEEe
Q 045861 387 SLAYNKLQGSI-PESLGDLRSLEFLDLSNNSFSGFIP---RSFEKLLYLEYLN 435 (508)
Q Consensus 387 ~L~~n~l~~~~-~~~~~~l~~L~~L~L~~n~~~~~~~---~~l~~l~~L~~L~ 435 (508)
++++|.++... ...+..+++|+.|++++|.++.... ..+..+|+|++||
T Consensus 93 ~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~~~~~r~~~i~~lp~L~~LD 145 (162)
T d1a9na_ 93 ILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLD 145 (162)
T ss_dssp ECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEET
T ss_pred eeccccccccccccccccccccchhhcCCCccccccchHHHHHHHCCCcCeeC
Confidence 66666665321 1345566666666666666653321 2355566666665
|
| >d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: Rna1p (RanGAP1), N-terminal domain domain: Rna1p (RanGAP1), N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=99.52 E-value=1.7e-15 Score=142.96 Aligned_cols=254 Identities=15% Similarity=0.217 Sum_probs=149.4
Q ss_pred cCCccccCCCCCcEEEccCcccccc----cChhhcCCCCCCEEeCCCCcCcCCCCCC-----cccccccCCCCCCEEEcc
Q 045861 126 TIPSFIFNASKLSILGIRTNSFSGT----IPSTIANLRNLQWLDLSFNYLTSSTSEL-----SFLSSLRNCRNLKVIDLT 196 (508)
Q Consensus 126 ~~~~~~~~l~~L~~L~l~~~~i~~~----~~~~~~~l~~L~~L~l~~n~~~~~~~~~-----~~~~~l~~~~~L~~L~l~ 196 (508)
.+...+.+...++.|++++|.+... +...+...++|+.+++.++......... .....+..+++|+.|+++
T Consensus 22 ~l~~~L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~~L~~L~L~ 101 (344)
T d2ca6a1 22 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 101 (344)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCCCccccccc
Confidence 3455677789999999999988643 3344567899999999987654332211 122445667778888888
Q ss_pred CccCccCCChhhhhcccccCeeEccCCcCcccCChhhhcCCCCcEEEcccCccccccCcc-------------ccCCCCC
Q 045861 197 GNQLHGILPSSMGNLSTSLEYIYMPYCRRSGRIPEEIGNLINLITMSLGINKLTGSIPIS-------------LGKLQKL 263 (508)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-------------l~~~~~L 263 (508)
+|.++......+ ...+...+.|+.|++++|.+....... ....+.|
T Consensus 102 ~n~i~~~~~~~l---------------------~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L 160 (344)
T d2ca6a1 102 DNAFGPTAQEPL---------------------IDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 160 (344)
T ss_dssp SCCCCTTTHHHH---------------------HHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCC
T ss_pred ccccccccccch---------------------hhhhcccccchheecccccccccccccccccccccccccccccCccc
Confidence 777654322222 223566789999999999875321111 1345567
Q ss_pred CcEEccCCcCcccc----chhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEE
Q 045861 264 QGLYLYKNKLEGSI----PDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFN 339 (508)
Q Consensus 264 ~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~ 339 (508)
+.+.+++|.+.... ...+...+++++|++++|.+..... .......+..+++|+.|+
T Consensus 161 ~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~-------------------~~~l~~~l~~~~~L~~L~ 221 (344)
T d2ca6a1 161 RSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGI-------------------EHLLLEGLAYCQELKVLD 221 (344)
T ss_dssp CEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHH-------------------HHHHHTTGGGCTTCCEEE
T ss_pred ceeecccccccccccccccchhhhhhhhccccccccccccccc-------------------ccchhhhhcchhhhcccc
Confidence 77777776654322 2223344555555555555432100 000112234445555555
Q ss_pred ccCCccccc----cCccccCCCCCcEEECCCCcCCCccchh----hhc--CCCCCEEECcCCcccccC----cccc-cCC
Q 045861 340 FSSNSLNGS----LPLDIGNLKVVVGIDLSRNNLSDSIPTV----IGG--LSNLAFFSLAYNKLQGSI----PESL-GDL 404 (508)
Q Consensus 340 L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~----~~~--l~~L~~L~L~~n~l~~~~----~~~~-~~l 404 (508)
+++|.++.. +...+...++|++|++++|.+.+..... +.. .+.|++|++++|.++... ...+ ...
T Consensus 222 Ls~N~i~~~g~~~L~~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~ 301 (344)
T d2ca6a1 222 LQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKM 301 (344)
T ss_dssp CCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHC
T ss_pred cccccccccccccccccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccC
Confidence 555555321 3334556677777777777776543332 222 356888888888876432 2223 245
Q ss_pred CCCCEEECCCCcccc
Q 045861 405 RSLEFLDLSNNSFSG 419 (508)
Q Consensus 405 ~~L~~L~L~~n~~~~ 419 (508)
+.|+.|++++|.+..
T Consensus 302 ~~L~~L~l~~N~~~~ 316 (344)
T d2ca6a1 302 PDLLFLELNGNRFSE 316 (344)
T ss_dssp TTCCEEECTTSBSCT
T ss_pred CCCCEEECCCCcCCC
Confidence 778888888888864
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.52 E-value=3.5e-14 Score=111.43 Aligned_cols=78 Identities=27% Similarity=0.389 Sum_probs=36.4
Q ss_pred cEEecCCCcCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEeeCccc
Q 045861 24 QALDINNNHVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLVLENN 103 (508)
Q Consensus 24 ~~L~l~~~~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 103 (508)
|+|++++|.++ .++ .+..+++|++|++++|+++ .+|+.++.+++|++|++++|++.+ ++ .+.++++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 34555555554 222 2445555555555555554 233344555555555555555442 22 2444444444444444
Q ss_pred cCC
Q 045861 104 NFD 106 (508)
Q Consensus 104 ~~~ 106 (508)
++.
T Consensus 76 ~i~ 78 (124)
T d1dcea3 76 RLQ 78 (124)
T ss_dssp CCC
T ss_pred ccC
Confidence 443
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.52 E-value=8.6e-15 Score=120.19 Aligned_cols=111 Identities=22% Similarity=0.245 Sum_probs=79.2
Q ss_pred CcEEECCCCcCCCccchhhhcCCCCCEEECcCCc-ccccCcccccCCCCCCEEECCCCcccccCcccccCCCCCCEEeCC
Q 045861 359 VVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNK-LQGSIPESLGDLRSLEFLDLSNNSFSGFIPRSFEKLLYLEYLNLS 437 (508)
Q Consensus 359 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~l~ 437 (508)
.+.++.+++.+. ..|..+.++++|++|++++|+ ++...+..|.++++|+.|++++|+++...+++|.++++|++|+|+
T Consensus 10 ~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls 88 (156)
T d2ifga3 10 SSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS 88 (156)
T ss_dssp SSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred CCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceecc
Confidence 344666666665 345556667777888876553 665556677778888888888888887777778888888888888
Q ss_pred CCcceecCCCc-cccCCCCcccccCCCCCCCCCCC
Q 045861 438 FNRLKGEIPSG-ESFANFSDNSFMGNSFLCGSPNL 471 (508)
Q Consensus 438 ~n~l~~~~p~~-~~~~~l~~l~l~~n~~~c~~~~~ 471 (508)
+|+++ .+|.. .....+..+++++|||.|+|...
T Consensus 89 ~N~l~-~l~~~~~~~~~l~~L~L~~Np~~C~C~~~ 122 (156)
T d2ifga3 89 FNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALR 122 (156)
T ss_dssp SSCCS-CCCSTTTCSCCCCEEECCSSCCCCCGGGH
T ss_pred CCCCc-ccChhhhccccccccccCCCcccCCchHH
Confidence 88887 55554 33446778888888888888643
|
| >d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.51 E-value=7.3e-14 Score=109.58 Aligned_cols=102 Identities=26% Similarity=0.348 Sum_probs=71.1
Q ss_pred cEEEccCCccccccCccccCCCCCcEEECCCCcCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCC
Q 045861 336 LVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRNNLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNN 415 (508)
Q Consensus 336 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 415 (508)
+.|++++|+++ .++ .+..+..|++|++++|+++ .+|..+..+++|+.|++++|.++. ++ .+..+++|++|++++|
T Consensus 1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~-l~-~~~~l~~L~~L~l~~N 75 (124)
T d1dcea3 1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNN 75 (124)
T ss_dssp SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSS
T ss_pred CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccc-cC-ccccccccCeEECCCC
Confidence 35677777776 333 3667777777777777776 456667777777777777777773 33 4677777888888888
Q ss_pred cccccCc-ccccCCCCCCEEeCCCCcce
Q 045861 416 SFSGFIP-RSFEKLLYLEYLNLSFNRLK 442 (508)
Q Consensus 416 ~~~~~~~-~~l~~l~~L~~L~l~~n~l~ 442 (508)
++.+... ..+..+++|+.|++++|++.
T Consensus 76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~ 103 (124)
T d1dcea3 76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC 103 (124)
T ss_dssp CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence 7775432 45677777888888888776
|
| >d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: Ngr ectodomain-like domain: High affinity nerve growth factor receptor, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.36 E-value=3e-12 Score=104.72 Aligned_cols=109 Identities=17% Similarity=0.131 Sum_probs=90.8
Q ss_pred cCCcEEEccCCccccccCccccCCCCCcEEECCCC-cCCCccchhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEE
Q 045861 333 RDILVFNFSSNSLNGSLPLDIGNLKVVVGIDLSRN-NLSDSIPTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLD 411 (508)
Q Consensus 333 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 411 (508)
...+.++++++.+. ..|..+..+++|++|++++| .++...+.+|.++++|+.|++++|+++...+.+|..+++|++|+
T Consensus 8 ~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~ 86 (156)
T d2ifga3 8 HGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLN 86 (156)
T ss_dssp SSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEE
T ss_pred CCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCccccccccccccccee
Confidence 44566788887777 56677888899999999766 48866677899999999999999999977788899999999999
Q ss_pred CCCCcccccCcccccCCCCCCEEeCCCCccee
Q 045861 412 LSNNSFSGFIPRSFEKLLYLEYLNLSFNRLKG 443 (508)
Q Consensus 412 L~~n~~~~~~~~~l~~l~~L~~L~l~~n~l~~ 443 (508)
|++|+++...++.+..+ +|+.|+|++|++..
T Consensus 87 Ls~N~l~~l~~~~~~~~-~l~~L~L~~Np~~C 117 (156)
T d2ifga3 87 LSFNALESLSWKTVQGL-SLQELVLSGNPLHC 117 (156)
T ss_dssp CCSSCCSCCCSTTTCSC-CCCEEECCSSCCCC
T ss_pred ccCCCCcccChhhhccc-cccccccCCCcccC
Confidence 99999997666666554 79999999999964
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.28 E-value=3.7e-14 Score=121.44 Aligned_cols=149 Identities=21% Similarity=0.217 Sum_probs=86.0
Q ss_pred CCcEEecCCC--cCCCCCCcCCcCCCCCcEEEcccCCCCCCCCcccCCCCCCCeEEccCCccccCCchhccCCCCCCEee
Q 045861 22 RLQALDINNN--HVTGPVPRNLWQCQELIAISLSHNQLTGLIPRDIGNLTSARALLLGNNNLIGEIPHEIGNLHNLEYLV 99 (508)
Q Consensus 22 ~L~~L~l~~~--~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 99 (508)
.++.+++++. .++ .++..+..+++|++|++++|+++.+ +.+.++++|++|++++|.+. .++..+..+++|++|+
T Consensus 24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~i--~~l~~l~~L~~L~Ls~N~i~-~i~~~~~~~~~L~~L~ 99 (198)
T d1m9la_ 24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNLIK-KIENLDAVADTLEELW 99 (198)
T ss_dssp TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESCC--CCHHHHTTCCEEECCEEEEC-SCSSHHHHHHHCCEEE
T ss_pred ccceeeeecccCchh-hhhhHHhcccccceeECcccCCCCc--ccccCCccccChhhcccccc-cccccccccccccccc
Confidence 3444555443 233 3445566677777777777777644 34667777777777777766 4444444455666666
Q ss_pred CccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcccccccC-hhhcCCCCCCEEeCCCCcCcCCCCCC
Q 045861 100 LENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNSFSGTIP-STIANLRNLQWLDLSFNYLTSSTSEL 178 (508)
Q Consensus 100 L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~~~l~~L~~L~l~~n~~~~~~~~~ 178 (508)
+++|.++. + ..+..+++|++|++++|+++.... ..+..+++|+.|++++|++.......
T Consensus 100 l~~N~i~~-------------------l-~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~ 159 (198)
T d1m9la_ 100 ISYNQIAS-------------------L-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKEN 159 (198)
T ss_dssp CSEEECCC-------------------H-HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTT
T ss_pred cccccccc-------------------c-ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccc
Confidence 66666552 1 235556677777777777653321 34666777777777777655432211
Q ss_pred ccc-----ccccCCCCCCEEE
Q 045861 179 SFL-----SSLRNCRNLKVID 194 (508)
Q Consensus 179 ~~~-----~~l~~~~~L~~L~ 194 (508)
... ..+..+++|+.|+
T Consensus 160 ~~~~~~r~~vi~~lp~L~~LD 180 (198)
T d1m9la_ 160 NATSEYRIEVVKRLPNLKKLD 180 (198)
T ss_dssp TTHHHHHHHHHHHCSSCCEES
T ss_pred cchhhHHHHHHHHCCCcCEeC
Confidence 110 1145567777765
|
| >d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: Outer arm dynein light chain 1 family: Outer arm dynein light chain 1 domain: Outer arm dynein light chain 1 species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]
Probab=99.28 E-value=3.4e-14 Score=121.67 Aligned_cols=80 Identities=18% Similarity=0.168 Sum_probs=38.9
Q ss_pred CCcEEccCC--cCccccchhhhCCCCCcEEEeeCceeeeeCCcccCCCCCCCEEEcCCCcccccCCccccCccCCcEEEc
Q 045861 263 LQGLYLYKN--KLEGSIPDSLCNLGRLVELQFYDNKLFGSIPACIGKLSPLRNLLLHSNVLTYVIPSTFLSLRDILVFNF 340 (508)
Q Consensus 263 L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~~~L~~L~L 340 (508)
.+.+++.+. .+. .++..+..+++|++|++++|.+.. ++ .+..+++|+.|++++|.+... +..+..+++|++|++
T Consensus 25 ~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~~-i~-~l~~l~~L~~L~Ls~N~i~~i-~~~~~~~~~L~~L~l 100 (198)
T d1m9la_ 25 AEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIKKI-ENLDAVADTLEELWI 100 (198)
T ss_dssp CSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEESC-CC-CHHHHTTCCEEECCEEEECSC-SSHHHHHHHCCEEEC
T ss_pred cceeeeecccCchh-hhhhHHhcccccceeECcccCCCC-cc-cccCCccccChhhcccccccc-ccccccccccccccc
Confidence 445555443 122 444556666666666666666642 22 345555666666665555432 122222334444444
Q ss_pred cCCccc
Q 045861 341 SSNSLN 346 (508)
Q Consensus 341 ~~n~l~ 346 (508)
++|.++
T Consensus 101 ~~N~i~ 106 (198)
T d1m9la_ 101 SYNQIA 106 (198)
T ss_dssp SEEECC
T ss_pred cccccc
Confidence 444443
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.42 E-value=1.1e-08 Score=83.64 Aligned_cols=82 Identities=24% Similarity=0.203 Sum_probs=41.6
Q ss_pred cCCCCCcEEECCCCcCCCcc--chhhhcCCCCCEEECcCCcccccCcccccCCCCCCEEECCCCcccccCcc-------c
Q 045861 354 GNLKVVVGIDLSRNNLSDSI--PTVIGGLSNLAFFSLAYNKLQGSIPESLGDLRSLEFLDLSNNSFSGFIPR-------S 424 (508)
Q Consensus 354 ~~l~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~-------~ 424 (508)
..++.|++|++++|+++... +..+..+++|+.|++++|.++....-.+.....|+.|++++|.+.....+ .
T Consensus 62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i 141 (162)
T d1koha1 62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI 141 (162)
T ss_dssp HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence 34555566666666555322 23345566666666666666533222223334566666666666543221 1
Q ss_pred ccCCCCCCEEe
Q 045861 425 FEKLLYLEYLN 435 (508)
Q Consensus 425 l~~l~~L~~L~ 435 (508)
+..+|+|+.||
T Consensus 142 ~~~~P~L~~LD 152 (162)
T d1koha1 142 RERFPKLLRLD 152 (162)
T ss_dssp HTTSTTCCEET
T ss_pred HHHCCCCCEEC
Confidence 34456666553
|
| >d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: L domain-like family: mRNA export factor tap domain: mRNA export factor tap species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.24 E-value=5.1e-08 Score=79.54 Aligned_cols=40 Identities=25% Similarity=0.159 Sum_probs=16.6
Q ss_pred CCCCCcEEEccCcccccccChhhcCCCCCCEEeCCCCcCc
Q 045861 133 NASKLSILGIRTNSFSGTIPSTIANLRNLQWLDLSFNYLT 172 (508)
Q Consensus 133 ~l~~L~~L~l~~~~i~~~~~~~~~~l~~L~~L~l~~n~~~ 172 (508)
.+++|+.|++++|.|+...+..+.....|+++++.+|++.
T Consensus 89 ~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~ 128 (162)
T d1koha1 89 KAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLS 128 (162)
T ss_dssp HSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTS
T ss_pred hCCcccccccccCccccchhhhhhhccccceeecCCCCcC
Confidence 3444444444444444322222223334455555555443
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=98.10 E-value=1.9e-06 Score=70.34 Aligned_cols=110 Identities=19% Similarity=0.145 Sum_probs=65.7
Q ss_pred ccCCcEEEccCC-ccccc----cCccccCCCCCcEEECCCCcCCCc----cchhhhcCCCCCEEECcCCccccc----Cc
Q 045861 332 LRDILVFNFSSN-SLNGS----LPLDIGNLKVVVGIDLSRNNLSDS----IPTVIGGLSNLAFFSLAYNKLQGS----IP 398 (508)
Q Consensus 332 ~~~L~~L~L~~n-~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~~ 398 (508)
.++|++|+|+++ .+... +...+...+.|++|++++|.+.+. +...+...+.|++|++++|.+++. +.
T Consensus 14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~ 93 (167)
T d1pgva_ 14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL 93 (167)
T ss_dssp CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence 345555555543 23211 223445556677777777766532 234455667788888888877643 23
Q ss_pred ccccCCCCCCEEECCCCccccc-------CcccccCCCCCCEEeCCCCcc
Q 045861 399 ESLGDLRSLEFLDLSNNSFSGF-------IPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 399 ~~~~~l~~L~~L~L~~n~~~~~-------~~~~l~~l~~L~~L~l~~n~l 441 (508)
.++...++|++|++++|.+... +.+.+...++|+.|+++.+..
T Consensus 94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~~ 143 (167)
T d1pgva_ 94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM 143 (167)
T ss_dssp HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCCc
Confidence 4556667788888887765432 334455567888888876643
|
| >d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: nematode (Caenorhabditis elegans) [TaxId: 6239]
Probab=97.79 E-value=7e-06 Score=66.79 Aligned_cols=118 Identities=17% Similarity=0.126 Sum_probs=74.8
Q ss_pred hCCCCCcEEecCCC-cCCCC----CCcCCcCCCCCcEEEcccCCCCCC----CCcccCCCCCCCeEEccCCccccC----
Q 045861 18 QHLPRLQALDINNN-HVTGP----VPRNLWQCQELIAISLSHNQLTGL----IPRDIGNLTSARALLLGNNNLIGE---- 84 (508)
Q Consensus 18 ~~~~~L~~L~l~~~-~~~~~----~~~~~~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~L~~n~l~~~---- 84 (508)
.+.++|++|+++++ .+... +...+...+.|++|+|++|.+... +.+.+...+.|++|++++|.+...
T Consensus 12 ~n~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~ 91 (167)
T d1pgva_ 12 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 91 (167)
T ss_dssp TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred hCCCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHH
Confidence 56788999999874 45422 233456778899999999888632 233455678889999998887753
Q ss_pred CchhccCCCCCCEeeCccccCCCCCCCCCCEEEccCCcccccCCccccCCCCCcEEEccCcc
Q 045861 85 IPHEIGNLHNLEYLVLENNNFDGPRHSNLERLYLERNNFSGTIPSFIFNASKLSILGIRTNS 146 (508)
Q Consensus 85 ~~~~~~~l~~L~~L~L~~n~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~L~~L~l~~~~ 146 (508)
+..++...+.|++|++++|.+..++- .....+...+...+.|+.|+++.+.
T Consensus 92 l~~aL~~n~sL~~L~l~~n~~~~~g~-----------~~~~~l~~~L~~n~sL~~l~l~~~~ 142 (167)
T d1pgva_ 92 LLRSTLVTQSIVEFKADNQRQSVLGN-----------QVEMDMMMAIEENESLLRVGISFAS 142 (167)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCH-----------HHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHHhCCcCCEEECCCCcCCCccH-----------HHHHHHHHHHHhCCCccEeeCcCCC
Confidence 23446667778888887776542100 0000133444556777888776554
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=97.57 E-value=2.1e-05 Score=63.80 Aligned_cols=111 Identities=16% Similarity=0.156 Sum_probs=68.7
Q ss_pred CccCCcEEEccCC-cccc----ccCccccCCCCCcEEECCCCcCCCcc----chhhhcCCCCCEEECcCCccccc----C
Q 045861 331 SLRDILVFNFSSN-SLNG----SLPLDIGNLKVVVGIDLSRNNLSDSI----PTVIGGLSNLAFFSLAYNKLQGS----I 397 (508)
Q Consensus 331 ~~~~L~~L~L~~n-~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~----~~~~~~l~~L~~L~L~~n~l~~~----~ 397 (508)
..++|++|+++++ .++. .+..++...+.|++|++++|.++... ...+...++++.+++++|.++.. +
T Consensus 15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~l 94 (166)
T d1io0a_ 15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILAL 94 (166)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHH
T ss_pred cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHHH
Confidence 3455666666552 3322 13334456677777788777776442 23455677888888888877642 2
Q ss_pred cccccCCCCCCEEECC--CCcccc----cCcccccCCCCCCEEeCCCCcc
Q 045861 398 PESLGDLRSLEFLDLS--NNSFSG----FIPRSFEKLLYLEYLNLSFNRL 441 (508)
Q Consensus 398 ~~~~~~l~~L~~L~L~--~n~~~~----~~~~~l~~l~~L~~L~l~~n~l 441 (508)
...+...++|+.++|+ +|.+.. .+.+.+...+.|+.|+++.+..
T Consensus 95 ~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~ 144 (166)
T d1io0a_ 95 VEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 144 (166)
T ss_dssp HHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence 3555667788875554 556654 3445556778888888877654
|
| >d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix) superfamily: RNI-like family: 28-residue LRR domain: Tropomodulin C-terminal domain species: Chicken (Gallus gallus) [TaxId: 9031]
Probab=96.96 E-value=7.7e-05 Score=60.36 Aligned_cols=19 Identities=16% Similarity=0.356 Sum_probs=9.6
Q ss_pred cccCCCCCCEEEccCccCc
Q 045861 183 SLRNCRNLKVIDLTGNQLH 201 (508)
Q Consensus 183 ~l~~~~~L~~L~l~~~~~~ 201 (508)
.+...++|++|++++|.++
T Consensus 41 al~~n~~L~~L~Ls~n~l~ 59 (166)
T d1io0a_ 41 ALKTNTYVKKFSIVGTRSN 59 (166)
T ss_dssp HHTTCCSCCEEECTTSCCC
T ss_pred HHhcCCccCeeeccCCccc
Confidence 3444455555555555444
|