Citrus Sinensis ID: 045863

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------
MAALSIGTHLSPLQQFKKRSLHSPSLTSVSSLHSLSSFDTYQCRIRGPRLLGNGVLARAEDKARESSSSIQQEAQQQPNNQKQFQELESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHcccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHcccccccccccHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHHccccHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHcccHHHccccHHHHHHHcHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHcHHHHHHHHHHHHHcccccccc
ccEEEEccccccHHHccccccccccccccccccccccccccccEcccccHccccEEEEEEccccccccccccccccccccHHHHHHcccccccccccccccccccHHHHHcccccHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccHHHccccccHHHHEEEEEHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHcccEEEEEEccccccccccccHHHHHHHHHcccccHHHHHHHHHHHHHHcccHcccc
maalsigthlsplqqfkkrslhspsltsvsslhslssfdtyqcrirgprllgngvlaraedkaresSSSIQQEAQQQPNNQKQFQelesssgtcdplcsldetsssdfeanyqpkTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDahqgfklvtdnittrkprtLLWVIGFVTFFLSSILDNLTSTIVMVSLLRklvppseyrKLLGAVVVIAAnaggawtpigdvTTTMLWIhgqistlptmkslfipsavsLAVPLAFLSLtsevngkgqessnvlaseqmaprgqLVFAVGIGALIFVPVfkaltglppymGILLGLGVLWILTDaihygeserqklkvpqalsridTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATmgmydltsfpqdskFWQLIAYCAGTGGSMLIIGSAAGVafmgmekvdff
maalsigthlsplqqfKKRSLHSPSLTSVSSLHSLSSFDTYQCRIRGPRLLGNGVLARAEDKARESSSSIQQEAQQQPNNQKQFQELESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAhqgfklvtdnittrkprtLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
MAALSIGTHLSPLQQFKKRslhspsltsvsslhslssFDTYQCRIRGPRLLGNGVLARAEDKAREssssiqqeaqqqpnnqkqfqELESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKalavfaaaitgavaiNHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLgavvviaanaggaWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMgillglgvlwilTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
************************************SFDTYQCRIRGPRLLGNGVL**********************************************************KTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTS*********************GQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGME*****
***LS**THLSPLQQ************************************************************************ESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEV****************APRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
MAALSIGTHLSPLQQFKKR************LHSLSSFDTYQCRIRGPRLLGNGVLA************************************CDPLCSLDETSSSDFEANYQPKTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
**ALSI*THLSPLQQFKKR*L*SP***SV********F*TYQCRIRGPRLLGNGVLARAEDK*******************K*FQELESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVN******S*****EQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooo
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiii
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MAALSIGTHLSPLQQFKKRSLHSPSLTSVSSLHSLSSFDTYQCRIRGPRLLGNGVxxxxxxxxxxxxxxxxxxxxxQPNNQKQFQELESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query537 2.2.26 [Sep-21-2011]
O07187428 Uncharacterized transport yes no 0.566 0.710 0.251 3e-07
P0A607429 Uncharacterized transport no no 0.554 0.694 0.258 7e-06
P0A606429 Uncharacterized transport no no 0.554 0.694 0.258 7e-06
>sp|O07187|Y2685_MYCTU Uncharacterized transporter Rv2685/MT2759 OS=Mycobacterium tuberculosis GN=Rv2685 PE=3 SV=1 Back     alignment and function desciption
 Score = 57.0 bits (136), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 154/358 (43%), Gaps = 54/358 (15%)

Query: 207 EIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRK---PRTLLWVIGFVTFFLSSILDNLTS 263
           +++F LLG M IV ++     F+ V      R    P  ++ ++  VT   S++LDN+T+
Sbjct: 56  DVIFLLLGMMIIVSVLRHTGVFEYVAIWAVKRANAAPLRIMILLVLVTALGSALLDNVTT 115

Query: 264 TIVM--VSLL---RKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTL 318
            +++  V+LL   R  V  + +        V A+N GGA T +GD    ++     +   
Sbjct: 116 VLLIAPVTLLVCDRLGVNSTPFL----VAEVFASNVGGAATLVGDPPNIIIASRAGL--- 168

Query: 319 PTMKSLFIPSAVS-LAVPLAFLSLT----SEVNGKGQESSNVLA---SEQMAPRGQLVFA 370
            T     I  A + L V +A + L       V  +    ++VL+    E +  RG L+  
Sbjct: 169 -TFNDFLIHMAPAVLVVMIALIGLLPWLLGSVTAEPDRVADVLSLNEREAIHDRGLLIKC 227

Query: 371 VGIGALIFVPVFKALTGLP-----PYMGILLGLGVLWILTDAIHYGESERQKLKVPQALS 425
                ++ V VF A    P     P +  LLG GVL      + +   ER        LS
Sbjct: 228 ----GVVLVLVFAAFIAHPVLHIQPSLVALLGAGVL------VRFSGLERSDY-----LS 272

Query: 426 RIDTQGALFFLGILLSVSSLEAAGLLREIANYLDA-----HISNIDLIASAIGVVSAVID 480
            ++    LFF G+ + V +L   G++ ++A           +  + LI      VS +ID
Sbjct: 273 SVEWDTLLFFAGLFVMVGALVKTGVVEQLARAATELTGGNELLTVGLILGISAPVSGIID 332

Query: 481 NVPLVAATMGMYD--LTSFP---QDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEK 533
           N+P VA    +    + + P       FW  +A  A  GG++  + ++A V  +G+ +
Sbjct: 333 NIPYVATMTPIVTELVAAMPGHVHPDTFWWALALSADFGGNLTAVAASANVVMLGIAR 390

Mycobacterium tuberculosis (taxid: 1773)
>sp|P0A607|Y2703_MYCBO Uncharacterized transporter Mb2703 OS=Mycobacterium bovis (strain ATCC BAA-935 / AF2122/97) GN=Mb2703 PE=3 SV=1 Back     alignment and function description
>sp|P0A606|Y2684_MYCTU Uncharacterized transporter Rv2684/MT2758 OS=Mycobacterium tuberculosis GN=Rv2684 PE=3 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
224056188586 predicted protein [Populus trichocarpa] 1.0 0.916 0.837 0.0
255555303580 na+/h+ antitransporter, putative [Ricinu 0.996 0.922 0.853 0.0
449445904576 PREDICTED: uncharacterized protein LOC10 0.990 0.923 0.815 0.0
296090451570 unnamed protein product [Vitis vinifera] 0.983 0.926 0.813 0.0
356536178578 PREDICTED: uncharacterized protein LOC10 0.988 0.918 0.802 0.0
224103659498 predicted protein [Populus trichocarpa] 0.843 0.909 0.913 0.0
297834856575 ATNHD1 [Arabidopsis lyrata subsp. lyrata 0.985 0.92 0.812 0.0
340743999523 sodium:hydrogen antiporter 1 [Flaveria b 0.888 0.912 0.846 0.0
18402254576 sodium:hydrogen antiporter 1 [Arabidopsi 0.986 0.920 0.797 0.0
359475433 676 PREDICTED: uncharacterized protein LOC10 0.847 0.673 0.896 0.0
>gi|224056188|ref|XP_002298746.1| predicted protein [Populus trichocarpa] gi|222846004|gb|EEE83551.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  879 bits (2272), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 454/542 (83%), Positives = 489/542 (90%), Gaps = 5/542 (0%)

Query: 1   MAALSIGTH-LSPLQQFKKRSLHSPSLTSVSSLHSLSSFDTYQCRIRGPRLLGNGVLARA 59
           MA+LSIGTH L   +Q KK S HS S T +SSL   SSF +  C++RG R+LGNG+LARA
Sbjct: 1   MASLSIGTHHLHTAKQLKKHSFHSISSTPLSSLPHKSSFGSSLCKLRGSRILGNGLLARA 60

Query: 60  EDKAR----ESSSSIQQEAQQQPNNQKQFQELESSSGTCDPLCSLDETSSSDFEANYQPK 115
           EDKA+       SS  +   QQP    Q Q+LE +SG+CDPLCSLDETSS D EANYQP+
Sbjct: 61  EDKAKGSSSPPPSSSNKRQGQQPIIDNQLQDLEPTSGSCDPLCSLDETSSQDLEANYQPR 120

Query: 116 TDLLKALAVFAAAITGAVAINHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLL 175
           TDL+KALAVFAAA TGAVAINHSWVAANQDLAMALLFGIGY GIIFEE LAFNKSGVGLL
Sbjct: 121 TDLVKALAVFAAAATGAVAINHSWVAANQDLAMALLFGIGYAGIIFEEFLAFNKSGVGLL 180

Query: 176 MAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNI 235
           MAVSLW+VRSIGAPS +IAVSEL+ ASAEVS+IVFFLLGAMTIVEIVDAHQGFKLVTD I
Sbjct: 181 MAVSLWVVRSIGAPSPDIAVSELTHASAEVSQIVFFLLGAMTIVEIVDAHQGFKLVTDII 240

Query: 236 TTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAG 295
           TTRKPRTLLWV+GFVTF LSS+LDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAG
Sbjct: 241 TTRKPRTLLWVVGFVTFLLSSVLDNLTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAG 300

Query: 296 GAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNV 355
           GAWTPIGDVTTTMLWIHGQISTLPTMK L +PS VSLAVPL+ LSLTSEVNGKG ++ NV
Sbjct: 301 GAWTPIGDVTTTMLWIHGQISTLPTMKDLLVPSVVSLAVPLSLLSLTSEVNGKGPDTPNV 360

Query: 356 LASEQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESER 415
           LASEQMAPRGQLVF+VGIGALIFVPVFKALTGLPP+MG+LLGLGVLWILTDAIHYGESE 
Sbjct: 361 LASEQMAPRGQLVFSVGIGALIFVPVFKALTGLPPFMGMLLGLGVLWILTDAIHYGESEG 420

Query: 416 QKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVV 475
           QKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLRE+ANYLDAHI NI+LIASAIGVV
Sbjct: 421 QKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLRELANYLDAHIPNIELIASAIGVV 480

Query: 476 SAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVD 535
           SA+IDNVPLVAATMGMYDL+SFPQD +FWQL+AYCAGTGGSML+IGSAAGVAFMGMEKVD
Sbjct: 481 SAIIDNVPLVAATMGMYDLSSFPQDHEFWQLVAYCAGTGGSMLVIGSAAGVAFMGMEKVD 540

Query: 536 FF 537
           FF
Sbjct: 541 FF 542

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255555303|ref|XP_002518688.1| na+/h+ antitransporter, putative [Ricinus communis] gi|223542069|gb|EEF43613.1| na+/h+ antitransporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|449445904|ref|XP_004140712.1| PREDICTED: uncharacterized protein LOC101221448 [Cucumis sativus] gi|449501683|ref|XP_004161436.1| PREDICTED: uncharacterized LOC101221448 [Cucumis sativus] Back     alignment and taxonomy information
>gi|296090451|emb|CBI40270.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356536178|ref|XP_003536616.1| PREDICTED: uncharacterized protein LOC100779521 isoform 1 [Glycine max] Back     alignment and taxonomy information
>gi|224103659|ref|XP_002313143.1| predicted protein [Populus trichocarpa] gi|222849551|gb|EEE87098.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|297834856|ref|XP_002885310.1| ATNHD1 [Arabidopsis lyrata subsp. lyrata] gi|297331150|gb|EFH61569.1| ATNHD1 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|340743999|dbj|BAK53228.1| sodium:hydrogen antiporter 1 [Flaveria bidentis] Back     alignment and taxonomy information
>gi|18402254|ref|NP_566638.1| sodium:hydrogen antiporter 1 [Arabidopsis thaliana] gi|11994472|dbj|BAB02474.1| unnamed protein product [Arabidopsis thaliana] gi|21537143|gb|AAM61484.1| unknown [Arabidopsis thaliana] gi|332642726|gb|AEE76247.1| sodium:hydrogen antiporter 1 [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|359475433|ref|XP_002285348.2| PREDICTED: uncharacterized protein LOC100265867 [Vitis vinifera] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query537
TAIR|locus:2090664576 NHD1 "sodium:hydrogen antiport 0.986 0.920 0.717 4.9e-195
TAIR|locus:2007243420 NHD2 "Na+/H+ antiporter 2" [Ar 0.724 0.926 0.716 1.9e-145
UNIPROTKB|Q47YD4448 nhaD "Na+/H+ antiporter NhaD" 0.690 0.828 0.259 1.4e-30
TIGR_CMR|CPS_3512448 CPS_3512 "Na+/H+ antiporter Nh 0.690 0.828 0.259 1.4e-30
UNIPROTKB|Q9EYG4477 nhaD "Na+/H+ antiporter NhaD" 0.648 0.729 0.290 3.5e-30
TIGR_CMR|VC_A1015477 VC_A1015 "Na+/H+ antiporter" [ 0.648 0.729 0.290 3.5e-30
TIGR_CMR|SO_0935489 SO_0935 "Na+/H+ antiporter" [S 0.623 0.685 0.280 1.3e-26
UNIPROTKB|Q480L5414 CPS_2792 "Putative Na+/H+ anti 0.670 0.869 0.269 3.9e-24
TIGR_CMR|CPS_2792414 CPS_2792 "putative Na+/H+ anti 0.670 0.869 0.269 3.9e-24
TIGR_CMR|CHY_2020423 CHY_2020 "arsenic transporter 0.670 0.851 0.258 1.5e-11
TAIR|locus:2090664 NHD1 "sodium:hydrogen antiporter 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1889 (670.0 bits), Expect = 4.9e-195, P = 4.9e-195
 Identities = 387/539 (71%), Positives = 418/539 (77%)

Query:     1 MAALSIGTHLSPLQQFKKRXXXXXXXXXXXXXXX--XXXFDTYQCRIRGPRLLGNGVLAR 58
             MA   IG+H +P  Q  KR                    F          RL  +GVL R
Sbjct:     1 MAVFPIGSHFAPPHQLTKRHVIATSSPISISTRLPQNVSFSKVSGVTGSTRLSKHGVLVR 60

Query:    59 AEDKAREXXXXXXXXXXXXXXXXXXXXELESSSGTCDPLCSLDETSSSDFEANYQPKTDL 118
             AEDK R                     +L  SSG CDPLCS+DE SSS FEANYQPKTD+
Sbjct:    61 AEDKIRSSSSPSSLDEPIDE-------DLMDSSGLCDPLCSVDEPSSSYFEANYQPKTDI 113

Query:   119 LKXXXXXXXXXXXXXXXNHSWVAANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAV 178
             +K               NHSWVAANQD+AMALLFGIGY GIIFEESLAFNKSG+GLLMAV
Sbjct:   114 IKALAILAAALTGTAAINHSWVAANQDVAMALLFGIGYAGIIFEESLAFNKSGIGLLMAV 173

Query:   179 SLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR 238
             SLW+VRSIGAPSTEIAV +L  A+AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR
Sbjct:   174 SLWVVRSIGAPSTEIAVLDLQHATAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTR 233

Query:   239 KPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYRKLLXXXXXXXXXXXXXW 298
             KP+TLLWV+GFVTFFLSSILDNLTSTIVMVSL+RKLVP SEYRKLL             W
Sbjct:   234 KPKTLLWVVGFVTFFLSSILDNLTSTIVMVSLIRKLVPQSEYRKLLGGVVVIAANAGGAW 293

Query:   299 TPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLAS 358
             TPIGDVTTTMLWIHGQISTLPTMK LF+PS VSLAVPLA +SLTSEVNGK Q+  +VLAS
Sbjct:   294 TPIGDVTTTMLWIHGQISTLPTMKDLFLPSVVSLAVPLALMSLTSEVNGKEQDPKDVLAS 353

Query:   359 EQMAPRGQLVFAVGIGALIFVPVFKALTGLPPYMXXXXXXXXXXXXTDAIHYGESERQKL 418
             E+MAPRG+LVF VG+GAL+FVPVFKALTGLPPYM            TDAIHYGESERQKL
Sbjct:   354 EKMAPRGKLVFGVGLGALVFVPVFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKL 413

Query:   419 KVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAV 478
             KVPQALSRIDTQGALFFLGILLSVSSLEAAG+LREIANYLDA+I N++LIASAIGVVSA+
Sbjct:   414 KVPQALSRIDTQGALFFLGILLSVSSLEAAGILREIANYLDANIPNVELIASAIGVVSAI 473

Query:   479 IDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF 537
             IDNVPLVAATMGMYDLTSFPQDS+FWQLIA+CAGTGGSML+IGSAAGVAFMGMEKVDFF
Sbjct:   474 IDNVPLVAATMGMYDLTSFPQDSEFWQLIAFCAGTGGSMLVIGSAAGVAFMGMEKVDFF 532
GO:0009507 "chloroplast" evidence=ISM
GO:0015137 "citrate transmembrane transporter activity" evidence=IEA
GO:0015386 "potassium:hydrogen antiporter activity" evidence=ISS
GO:0015746 "citrate transport" evidence=IEA
GO:0016021 "integral to membrane" evidence=IEA
GO:0055085 "transmembrane transport" evidence=IEA
GO:0006814 "sodium ion transport" evidence=ISS
GO:0015385 "sodium:hydrogen antiporter activity" evidence=ISS
GO:0035725 "sodium ion transmembrane transport" evidence=ISS
GO:0006848 "pyruvate transport" evidence=IMP
GO:0050833 "pyruvate transmembrane transporter activity" evidence=IMP
TAIR|locus:2007243 NHD2 "Na+/H+ antiporter 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q47YD4 nhaD "Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_3512 CPS_3512 "Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
UNIPROTKB|Q9EYG4 nhaD "Na+/H+ antiporter NhaD" [Vibrio cholerae (taxid:666)] Back     alignment and assigned GO terms
TIGR_CMR|VC_A1015 VC_A1015 "Na+/H+ antiporter" [Vibrio cholerae O1 biovar El Tor (taxid:686)] Back     alignment and assigned GO terms
TIGR_CMR|SO_0935 SO_0935 "Na+/H+ antiporter" [Shewanella oneidensis MR-1 (taxid:211586)] Back     alignment and assigned GO terms
UNIPROTKB|Q480L5 CPS_2792 "Putative Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CPS_2792 CPS_2792 "putative Na+/H+ antiporter NhaD" [Colwellia psychrerythraea 34H (taxid:167879)] Back     alignment and assigned GO terms
TIGR_CMR|CHY_2020 CHY_2020 "arsenic transporter family protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
eugene3.00012381
NHAD transporter family protein (586 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
PLN00137424 PLN00137, PLN00137, NHAD transporter family protei 0.0
TIGR00775420 TIGR00775, NhaD, Na+/H+ antiporter, NhaD family 1e-109
cd01116413 cd01116, P_permease, Permease P (pink-eyed dilutio 3e-78
COG1055424 COG1055, ArsB, Na+/H+ antiporter NhaD and related 2e-44
cd00625396 cd00625, ArsB_NhaD_permease, Anion permease ArsB/N 5e-33
cd01117384 cd01117, YbiR_permease, Putative anion permease Yb 9e-10
pfam03600377 pfam03600, CitMHS, Citrate transporter 9e-06
>gnl|CDD|215071 PLN00137, PLN00137, NHAD transporter family protein; Provisional Back     alignment and domain information 
 Score =  728 bits (1881), Expect = 0.0
 Identities = 341/397 (85%), Positives = 369/397 (92%)

Query: 141 AANQDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSR 200
           AANQ LAMAL+FG GY GIIFEESLAFNKSGV LLMAVSLW++R+IGAPS EI   EL  
Sbjct: 1   AANQGLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRH 60

Query: 201 ASAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDN 260
           A AEVSEIVFFLLGAMTIVEIVDAHQGFKLVTD+ITTR PRTLLWV+GF+TFFLSSILDN
Sbjct: 61  ALAEVSEIVFFLLGAMTIVEIVDAHQGFKLVTDSITTRSPRTLLWVVGFITFFLSSILDN 120

Query: 261 LTSTIVMVSLLRKLVPPSEYRKLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPT 320
           LT+TIVMVSLLRKLVPPSEYRKLLGAVVV+AANAGGAWTPIGDVTTTMLWIHGQISTLPT
Sbjct: 121 LTTTIVMVSLLRKLVPPSEYRKLLGAVVVVAANAGGAWTPIGDVTTTMLWIHGQISTLPT 180

Query: 321 MKSLFIPSAVSLAVPLAFLSLTSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVP 380
           M+ LF+PSAVSLAVPLA +SLTSE NG  Q+SS +LASEQMAPRGQLVF VG+GAL+FVP
Sbjct: 181 MQGLFLPSAVSLAVPLALMSLTSEENGSPQDSSPLLASEQMAPRGQLVFGVGVGALLFVP 240

Query: 381 VFKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILL 440
           VFKALTGLPPYMG+LLGLGVLWILTDAIHYGESERQ LKVPQALSRIDTQG LFFLGILL
Sbjct: 241 VFKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRIDTQGILFFLGILL 300

Query: 441 SVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQD 500
           SV SL+AAG+LRE+ANYLDA+I N++LIASAIGV SA+IDNVPLVAATMGMYDLT +P D
Sbjct: 301 SVGSLDAAGILRELANYLDANIPNVELIASAIGVASAIIDNVPLVAATMGMYDLTDYPMD 360

Query: 501 SKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF 537
           S+ WQLIA CAGTGGS+L+IGSAAGVAFMGMEKVDFF
Sbjct: 361 SELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFF 397

Length = 424
>gnl|CDD|129857 TIGR00775, NhaD, Na+/H+ antiporter, NhaD family Back     alignment and domain information
>gnl|CDD|238536 cd01116, P_permease, Permease P (pink-eyed dilution) Back     alignment and domain information
>gnl|CDD|223983 COG1055, ArsB, Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>gnl|CDD|238344 cd00625, ArsB_NhaD_permease, Anion permease ArsB/NhaD Back     alignment and domain information
>gnl|CDD|238537 cd01117, YbiR_permease, Putative anion permease YbiR Back     alignment and domain information
>gnl|CDD|217633 pfam03600, CitMHS, Citrate transporter Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 537
PLN00137424 NHAD transporter family protein; Provisional 100.0
TIGR00775420 NhaD Na+/H+ antiporter, NhaD family. These protein 100.0
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 100.0
PRK15445427 arsenical pump membrane protein; Provisional 100.0
PLN00136482 silicon transporter; Provisional 100.0
cd01118416 ArsB_permease Anion permease ArsB. These permeases 100.0
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 100.0
TIGR00935429 2a45 arsenical pump membrane protein. 100.0
TIGR00785444 dass anion transporter. Functionally characterized 100.0
cd01117384 YbiR_permease Putative anion permease YbiR. Based 100.0
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 100.0
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 100.0
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 100.0
PRK09547513 nhaB sodium/proton antiporter; Reviewed 100.0
KOG2639685 consensus Sodium sulfate symporter and related ars 100.0
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 100.0
cd00625396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 100.0
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 100.0
PF03600351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.97
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 99.94
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 99.93
COG2851433 CitM H+/citrate symporter [Energy production and c 99.83
PRK09412433 anaerobic C4-dicarboxylate transporter; Reviewed 99.71
PLN00136482 silicon transporter; Provisional 99.67
cd01116413 P_permease Permease P (pink-eyed dilution). Mutati 99.67
PRK15445427 arsenical pump membrane protein; Provisional 99.65
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 99.64
cd01115382 SLC13_permease Permease SLC13 (solute carrier 13). 99.64
TIGR00785444 dass anion transporter. Functionally characterized 99.63
TIGR00770430 Dcu anaerobic c4-dicarboxylate membrane transporte 99.56
COG1055424 ArsB Na+/H+ antiporter NhaD and related arsenite p 99.55
TIGR00935429 2a45 arsenical pump membrane protein. 99.54
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 99.52
cd01118416 ArsB_permease Anion permease ArsB. These permeases 99.5
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 99.49
PRK12489443 anaerobic C4-dicarboxylate transporter; Reviewed 99.48
PF00939471 Na_sulph_symp: Sodium:sulfate symporter transmembr 99.47
KOG2639685 consensus Sodium sulfate symporter and related ars 99.47
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 99.47
COG0471461 CitT Di- and tricarboxylate transporters [Inorgani 99.46
PRK09547513 nhaB sodium/proton antiporter; Reviewed 99.45
cd01117384 YbiR_permease Putative anion permease YbiR. Based 99.44
TIGR00775 420 NhaD Na+/H+ antiporter, NhaD family. These protein 99.26
PF03600 351 CitMHS: Citrate transporter; InterPro: IPR004680 C 99.25
cd00625396 ArsB_NhaD_permease Anion permease ArsB/NhaD. These 99.25
PLN00137424 NHAD transporter family protein; Provisional 99.23
TIGR00791440 gntP gluconate transporter. This family includes k 99.22
COG3067516 NhaB Na+/H+ antiporter [Inorganic ion transport an 99.18
TIGR00774515 NhaB Na+/H+ antiporter NhaB. These proteins are me 99.16
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 99.1
PF02040423 ArsB: Arsenical pump membrane protein; InterPro: I 99.08
PF02447441 GntP_permease: GntP family permease; InterPro: IPR 99.06
PRK09821454 putative transporter; Provisional 99.06
PRK14984438 high-affinity gluconate transporter; Provisional 99.03
PRK10472445 low affinity gluconate transporter; Provisional 99.01
PRK15060425 L-dehydroascorbate transporter large permease subu 98.96
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 98.95
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 98.88
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 98.8
TIGR00529387 AF0261 converved hypothetical integral membrane pr 98.8
PRK10034447 fructuronate transporter; Provisional 98.79
PF03605364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 98.79
TIGR00784431 citMHS citrate transporter, CitMHS family. This fa 98.78
PRK09921445 permease DsdX; Provisional 98.77
TIGR00786405 dctM TRAP transporter, DctM subunit. force-depende 98.76
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 98.73
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 98.7
TIGR02123 613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 98.68
COG2610442 GntT H+/gluconate symporter and related permeases 98.6
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 98.5
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 98.46
KOG1281586 consensus Na+/dicarboxylate, Na+/tricarboxylate an 98.43
COG2056444 Predicted permease [General function prediction on 98.31
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 98.29
PRK10654455 dcuC C4-dicarboxylate transporter DcuC; Provisiona 98.25
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 98.01
PRK11588506 hypothetical protein; Provisional 98.01
PF02652522 Lactate_perm: L-lactate permease; InterPro: IPR003 97.97
COG2704436 DcuB Anaerobic C4-dicarboxylate transporter [Gener 97.97
PRK12489 443 anaerobic C4-dicarboxylate transporter; Reviewed 97.91
COG1906388 Uncharacterized conserved protein [Function unknow 97.91
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 97.89
PRK15060425 L-dehydroascorbate transporter large permease subu 97.78
TIGR00771388 DcuC c4-dicarboxylate anaerobic carrier family pro 97.77
COG1288481 Predicted membrane protein [Function unknown] 97.74
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 97.73
COG1593379 DctQ TRAP-type C4-dicarboxylate transport system, 97.72
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 97.63
PRK09412 433 anaerobic C4-dicarboxylate transporter; Reviewed 97.54
PF06808416 DctM: DctM-like transporters; InterPro: IPR010656 97.51
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 97.43
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 97.4
TIGR00770 430 Dcu anaerobic c4-dicarboxylate membrane transporte 97.23
TIGR00795 530 lctP L-lactate transport. The only characterized m 97.22
PF07158149 MatC_N: Dicarboxylate carrier protein MatC N-termi 97.21
PF03606465 DcuC: C4-dicarboxylate anaerobic carrier; InterPro 97.16
TIGR02123613 TRAP_fused TRAP transporter, 4TM/12TM fusion prote 97.09
PRK11588506 hypothetical protein; Provisional 96.87
PRK09804455 putative cryptic C4-dicarboxylate transporter DcuD 96.77
TIGR00931454 antiport_nhaC Na+/H+ antiporter NhaC. A single mem 96.51
COG4666 642 TRAP-type uncharacterized transport system, fused 96.34
PF04165385 DUF401: Protein of unknown function (DUF401) ; Int 96.33
PRK10420 551 L-lactate permease; Provisional 96.31
TIGR00819513 ydaH p-Aminobenzoyl-glutamate transporter family. 96.27
PRK09695 560 glycolate transporter; Provisional 96.27
PF03806502 ABG_transport: AbgT putative transporter family; I 96.19
PF03806502 ABG_transport: AbgT putative transporter family; I 96.14
COG1757485 NhaC Na+/H+ antiporter [Energy production and conv 96.06
PRK11339508 abgT putative aminobenzoyl-glutamate transporter; 95.91
COG2851433 CitM H+/citrate symporter [Energy production and c 95.89
TIGR00529387 AF0261 converved hypothetical integral membrane pr 95.62
COG1288481 Predicted membrane protein [Function unknown] 95.2
COG4756367 Predicted cation transporter [General function pre 94.98
COG3069451 DcuC C4-dicarboxylate transporter [Energy producti 94.44
PF06450515 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterP 94.11
PF07854347 DUF1646: Protein of unknown function (DUF1646); In 93.82
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 93.78
PF02447441 GntP_permease: GntP family permease; InterPro: IPR 93.58
COG2056444 Predicted permease [General function prediction on 93.45
COG4756367 Predicted cation transporter [General function pre 93.19
PF07399438 DUF1504: Protein of unknown function (DUF1504); In 93.18
TIGR00791440 gntP gluconate transporter. This family includes k 93.07
PRK10472445 low affinity gluconate transporter; Provisional 92.91
PF03553303 Na_H_antiporter: Na+/H+ antiporter family; InterPr 90.35
COG2978516 AbgT Putative p-aminobenzoyl-glutamate transporter 88.72
COG2610442 GntT H+/gluconate symporter and related permeases 87.14
TIGR00366438 conserved hypothetical integral membrane protein. 86.95
PF02690142 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR 86.94
TIGR00366438 conserved hypothetical integral membrane protein. 85.94
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 85.88
COG4664447 FcbT3 TRAP-type mannitol/chloroaromatic compound t 85.53
PRK09821454 putative transporter; Provisional 85.5
PF02667453 SCFA_trans: Short chain fatty acid transporter; In 84.76
COG2978516 AbgT Putative p-aminobenzoyl-glutamate transporter 82.4
PF03605 364 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane tra 81.27
PF06166308 DUF979: Protein of unknown function (DUF979); Inte 81.16
PF06149218 DUF969: Protein of unknown function (DUF969); Inte 80.12
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information 
Probab=100.00  E-value=1.4e-51  Score=440.40  Aligned_cols=392  Identities=84%  Similarity=1.278  Sum_probs=314.9

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHH
Q 045863          144 QDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVD  223 (537)
Q Consensus       144 ~~~~~l~IFv~~i~~ii~e~~l~ip~~~val~~~~~l~v~gvi~~~~~~~a~~~~~~~ls~~~~~I~li~g~~ii~~~l~  223 (537)
                      +...++++|+++|.++++|+.++++++++++.++.++|+++.++..+.+++++.+++.+.++.+++++++|+|+++++++
T Consensus         4 ~~~~~~~if~~~y~~i~~e~~~~i~~~~~al~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~L~g~m~iv~~l~   83 (424)
T PLN00137          4 QGLAMALVFGAGYAGIIFEESLAFNKSGVALLMAVSLWVIRAIGAPSLEIVTLELRHALAEVSEIVFFLLGAMTIVEIVD   83 (424)
T ss_pred             chhHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46788999999999999995555999999999999999987753334567777778777888899999999999999999


Q ss_pred             HhChHHHHHHHHhcCCchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHhhcccccccc
Q 045863          224 AHQGFKLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLV-PPSEYRKLLGAVVVIAANAGGAWTPIG  302 (537)
Q Consensus       224 ~tGl~~ria~~l~~~~~~~l~~~l~l~~~~lS~fl~N~ta~~im~PI~~~l~-~p~~~~~~~l~~va~aan~Gg~~TpiG  302 (537)
                      ++|++|++++++.+++++++++.++++++++|+|++|++++++|.|++.++. ++++. ...++.++++||+||++||+|
T Consensus        84 ~~g~f~~~a~~~~~~~~~~l~~~~~~~~~~lS~~l~N~tt~l~~~p~~~~~~~~~~~~-~~~~~~~~~aaNiGg~~TpiG  162 (424)
T PLN00137         84 AHQGFKLVTDSITTRSPRTLLWVVGFITFFLSSILDNLTTTIVMVSLLRKLVPPSEYR-KLLGAVVVVAANAGGAWTPIG  162 (424)
T ss_pred             HcCcHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccch-HHHHHHHHHhccccceeccCC
Confidence            9999999999998889999999999999999999999999999999987772 22221 122567899999999999999


Q ss_pred             chhhhhhHhcccCChHHHHHHhhHHHHHHHHHHHHHHHh-hccccCCCcCCccccccccCCchhHHHHHHHHHHHHHHHH
Q 045863          303 DVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSL-TSEVNGKGQESSNVLASEQMAPRGQLVFAVGIGALIFVPV  381 (537)
Q Consensus       303 ~~~Nll~~~~~~isf~~~~~~~~pp~lv~l~v~~~ll~~-~~~~~~~~~~~~~l~~~~~i~~~~~~~~~l~l~~lill~i  381 (537)
                      ||||+++++.++++|.||+..+.||.+++.++.+.++++ +|+..+. +...+.+++++.+++++....+++.++++..+
T Consensus       163 np~NllI~~~~~lsf~~f~~~l~~P~li~~lv~~~i~~~~~~~~~~~-~~~~~~~~~~~~~~~~~l~~~l~i~~~~~~~~  241 (424)
T PLN00137        163 DVTTTMLWIHGQISTLPTMQGLFLPSAVSLAVPLALMSLTSEENGSP-QDSSPLLASEQMAPRGQLVFGVGVGALLFVPV  241 (424)
T ss_pred             CcCeeeehccCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCh-hhccccchhhhcccHHHHHHHHHHHHHHHHHH
Confidence            999999999889999998889999998887766665655 3432211 11111123344455555554444444433336


Q ss_pred             HhhhcCCChHHHHHHHHHHHHHHhhhccccchhhccCCHHHHhhcCChHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHhh
Q 045863          382 FKALTGLPPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSLEAAGLLREIANYLDAH  461 (537)
Q Consensus       382 ~~~~~gi~~~~valiga~lLll~~~vl~~~~~~~~~i~~~~~l~~v~W~tLl~f~glf~l~~~L~~tG~~~~la~~l~~~  461 (537)
                      ++...|+|+.++++.++.++++....++++++++++.+++|+++++||++++||+|+|+++++++++|+.+++++.+...
T Consensus       242 ~~~~~gl~~~~~al~~~~~lll~~~~~~~~~~~~~~~~~~~~l~~Vdw~tLlfF~GlFilvgal~~tG~~~~la~~l~~~  321 (424)
T PLN00137        242 FKALTGLPPYMGMLLGLGVLWILTDAIHYGESERQALKVPQALSRIDTQGILFFLGILLSVGSLDAAGILRELANYLDAN  321 (424)
T ss_pred             HHHhhCCChHHHHHHHHHHHHHHHHHHhcccccccccCHHHHHHhCCccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHh
Confidence            67778999999999888777665422222223344579999999999999999999999999999999999999999776


Q ss_pred             hhhhHHHHHHHHHHHHhHchHHHHHHHHhhhhccCCCCChHHHHHHHHHHHHhhhhhHHhHHHHHHHHhhcCcccC
Q 045863          462 ISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSFPQDSKFWQLIAYCAGTGGSMLIIGSAAGVAFMGMEKVDFF  537 (537)
Q Consensus       462 i~~~~~i~~i~~~lS~~isNtp~va~llpv~~~~~~~~~~~~~laLa~~a~iGg~lTpiGS~an~i~~g~~~~~f~  537 (537)
                      .++...+.++++++||++||+|.++++.|++...+.+...+.|+++++|+|+|||+|++||.||++++|..|.+|+
T Consensus       322 ~~~~~~i~~~s~ilS~~IsNVP~~~~~~p~~~~~~~~~~~~~w~aLalga~lGGn~tliGS~Anvi~~~~~~~~~~  397 (424)
T PLN00137        322 IPNVELIASAIGVASAIIDNVPLVAATMGMYDLTDYPMDSELWQLIALCAGTGGSLLVIGSAAGVAFMGMEKVDFF  397 (424)
T ss_pred             cCCchhHHHHHHHHHHHhcchHHHHHHhhhhhhccCCcchHHHHHHHHHhCccchHHHHHHHHHHHHHHHhhhhhh
Confidence            6554567888999999999999999999997533333235789999999999999999999999999999988774

>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PLN00136 silicon transporter; Provisional Back     alignment and domain information
>cd01116 P_permease Permease P (pink-eyed dilution) Back     alignment and domain information
>PRK15445 arsenical pump membrane protein; Provisional Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>cd01115 SLC13_permease Permease SLC13 (solute carrier 13) Back     alignment and domain information
>TIGR00785 dass anion transporter Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>COG1055 ArsB Na+/H+ antiporter NhaD and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00935 2a45 arsenical pump membrane protein Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>cd01118 ArsB_permease Anion permease ArsB Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PF00939 Na_sulph_symp: Sodium:sulfate symporter transmembrane region; InterPro: IPR001898 Integral membrane proteins that mediate the intake of a wide variety of molecules with the concomitant uptake of sodium ions (sodium symporters) can be grouped, on the basis of sequence and functional similarities into a number of distinct families Back     alignment and domain information
>KOG2639 consensus Sodium sulfate symporter and related arsenite permeases [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>COG0471 CitT Di- and tricarboxylate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>PRK09547 nhaB sodium/proton antiporter; Reviewed Back     alignment and domain information
>cd01117 YbiR_permease Putative anion permease YbiR Back     alignment and domain information
>TIGR00775 NhaD Na+/H+ antiporter, NhaD family Back     alignment and domain information
>PF03600 CitMHS: Citrate transporter; InterPro: IPR004680 Characterised proteins in this entry belong mostly to the divalent anion symporter family, which is found in bacteria, archaea and eukaryotes Back     alignment and domain information
>cd00625 ArsB_NhaD_permease Anion permease ArsB/NhaD Back     alignment and domain information
>PLN00137 NHAD transporter family protein; Provisional Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>COG3067 NhaB Na+/H+ antiporter [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR00774 NhaB Na+/H+ antiporter NhaB Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>PF02040 ArsB: Arsenical pump membrane protein; InterPro: IPR000802 Arsenic is a toxic metalloid whose trivalent and pentavalent ions inhibit a variety of biochemical processes Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PRK14984 high-affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>PRK10034 fructuronate transporter; Provisional Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>TIGR00784 citMHS citrate transporter, CitMHS family Back     alignment and domain information
>PRK09921 permease DsdX; Provisional Back     alignment and domain information
>TIGR00786 dctM TRAP transporter, DctM subunit Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>KOG1281 consensus Na+/dicarboxylate, Na+/tricarboxylate and phosphate transporters [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>PRK10654 dcuC C4-dicarboxylate transporter DcuC; Provisional Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>PF02652 Lactate_perm: L-lactate permease; InterPro: IPR003804 L-lactate permease is an integral membrane protein probably involved in L-lactate transport Back     alignment and domain information
>COG2704 DcuB Anaerobic C4-dicarboxylate transporter [General function prediction only] Back     alignment and domain information
>PRK12489 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>COG1906 Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PRK15060 L-dehydroascorbate transporter large permease subunit; Provisional Back     alignment and domain information
>TIGR00771 DcuC c4-dicarboxylate anaerobic carrier family protein Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>COG1593 DctQ TRAP-type C4-dicarboxylate transport system, large permease component [Carbohydrate transport and metabolism] Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>PRK09412 anaerobic C4-dicarboxylate transporter; Reviewed Back     alignment and domain information
>PF06808 DctM: DctM-like transporters; InterPro: IPR010656 This domain represents a conserved region located towards the N terminus of the DctM subunit of the bacterial and archaeal TRAP C4-dicarboxylate transport (Dct) system permease Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>TIGR00770 Dcu anaerobic c4-dicarboxylate membrane transporter family protein Back     alignment and domain information
>TIGR00795 lctP L-lactate transport Back     alignment and domain information
>PF07158 MatC_N: Dicarboxylate carrier protein MatC N-terminus; InterPro: IPR009827 This entry represents the N-terminal region of the bacterial dicarboxylate carrier protein MatC Back     alignment and domain information
>PF03606 DcuC: C4-dicarboxylate anaerobic carrier; InterPro: IPR018385 Escherichia coli contains four different secondary carriers (DcuA, DcuB, DcuC, and DctA) for C4-dicarboxylates [, , , ] DcuA is used for aerobic growth on C4-dicarboxylates [, ], whereas the Dcu carriers (encoded by the dcuA, dcuB, and dcuC genes) are used under anaerobic conditions and form a distinct family of carriers [, , , , , ] Back     alignment and domain information
>TIGR02123 TRAP_fused TRAP transporter, 4TM/12TM fusion protein Back     alignment and domain information
>PRK11588 hypothetical protein; Provisional Back     alignment and domain information
>PRK09804 putative cryptic C4-dicarboxylate transporter DcuD; Provisional Back     alignment and domain information
>TIGR00931 antiport_nhaC Na+/H+ antiporter NhaC Back     alignment and domain information
>COG4666 TRAP-type uncharacterized transport system, fused permease components [General function prediction only] Back     alignment and domain information
>PF04165 DUF401: Protein of unknown function (DUF401) ; InterPro: IPR007294 Members of this family are predicted to have 10 transmembrane regions Back     alignment and domain information
>PRK10420 L-lactate permease; Provisional Back     alignment and domain information
>TIGR00819 ydaH p-Aminobenzoyl-glutamate transporter family Back     alignment and domain information
>PRK09695 glycolate transporter; Provisional Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>PF03806 ABG_transport: AbgT putative transporter family; InterPro: IPR004697 The p-aminobenzoyl-glutamate transporter family includes two putative transporters, the AbgT protein of Escherichia coli and MtrF of Neisseria gonorrhoeae Back     alignment and domain information
>COG1757 NhaC Na+/H+ antiporter [Energy production and conversion] Back     alignment and domain information
>PRK11339 abgT putative aminobenzoyl-glutamate transporter; Provisional Back     alignment and domain information
>COG2851 CitM H+/citrate symporter [Energy production and conversion] Back     alignment and domain information
>TIGR00529 AF0261 converved hypothetical integral membrane protein Back     alignment and domain information
>COG1288 Predicted membrane protein [Function unknown] Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>COG3069 DcuC C4-dicarboxylate transporter [Energy production and conversion] Back     alignment and domain information
>PF06450 NhaB: Bacterial Na+/H+ antiporter B (NhaB); InterPro: IPR004671 The Escherichia coli NhaB Na+:H+ Antiporter (NhaB) protein has 12 predicted TMS, and catalyses sodium/proton exchange Back     alignment and domain information
>PF07854 DUF1646: Protein of unknown function (DUF1646); InterPro: IPR012443 Some of the members of this family are hypothetical bacterial and archaeal proteins, but others are annotated as being cation transporters expressed by the archaeon Methanosarcina mazei (Methanosarcina frisia) (Q8PXG5 from SWISSPROT, Q8PXG7 from SWISSPROT and Q8PXG8 from SWISSPROT) Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>PF02447 GntP_permease: GntP family permease; InterPro: IPR003474 This is a family of integral membrane permeases that are involved in gluconate uptake Back     alignment and domain information
>COG2056 Predicted permease [General function prediction only] Back     alignment and domain information
>COG4756 Predicted cation transporter [General function prediction only] Back     alignment and domain information
>PF07399 DUF1504: Protein of unknown function (DUF1504); InterPro: IPR009978 This family consists of several hypothetical bacterial proteins of around 440 residues in length Back     alignment and domain information
>TIGR00791 gntP gluconate transporter Back     alignment and domain information
>PRK10472 low affinity gluconate transporter; Provisional Back     alignment and domain information
>PF03553 Na_H_antiporter: Na+/H+ antiporter family; InterPro: IPR018461 A single member of the NhaC family, a protein from Bacillus firmus, has been functionally characterised Back     alignment and domain information
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] Back     alignment and domain information
>COG2610 GntT H+/gluconate symporter and related permeases [Carbohydrate transport and metabolism / Amino acid transport and metabolism] Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF02690 Na_Pi_cotrans: Na+/Pi-cotransporter; InterPro: IPR003841 This family includes the mammalian type II renal Na+/Pi-cotransporters and other proteins from lower eukaryotes and bacteria some of which are also Na+/Pi-cotransporters Back     alignment and domain information
>TIGR00366 conserved hypothetical integral membrane protein Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>COG4664 FcbT3 TRAP-type mannitol/chloroaromatic compound transport system, large permease component [Secondary metabolites biosynthesis, transport, and catabolism] Back     alignment and domain information
>PRK09821 putative transporter; Provisional Back     alignment and domain information
>PF02667 SCFA_trans: Short chain fatty acid transporter; InterPro: IPR006160 Members of this family may be short chain fatty acid transporters although there has been no experimental characterisation of this function Back     alignment and domain information
>COG2978 AbgT Putative p-aminobenzoyl-glutamate transporter [Coenzyme metabolism] Back     alignment and domain information
>PF03605 DcuA_DcuB: Anaerobic c4-dicarboxylate membrane transporter; InterPro: IPR004668 These proteins are members of the C4-Dicarboxylate Uptake (Dcu) family Back     alignment and domain information
>PF06166 DUF979: Protein of unknown function (DUF979); InterPro: IPR009323 This family consists of several putative bacterial membrane proteins Back     alignment and domain information
>PF06149 DUF969: Protein of unknown function (DUF969); InterPro: IPR010374 This is a family of uncharacterised bacterial membrane proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query537
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-08
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
 Score = 54.1 bits (129), Expect = 9e-08
 Identities = 80/493 (16%), Positives = 143/493 (29%), Gaps = 160/493 (32%)

Query: 68  SSIQQEAQQQPNNQKQFQELESSSGTCDPLCSLDETSSSDFEANYQPKTDLLKALA---- 123
           S I+ E +Q     + + E        D L + ++  +    +  QP   L +AL     
Sbjct: 96  SPIKTEQRQPSMMTRMYIE------QRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149

Query: 124 ---VFAAAITGAVAINHSWVAAN--QDLAMALLFGIGYTGIIFEESLAFNKSGVGLL-MA 177
              V    I G +    +WVA +      +           IF  +L    S   +L M 
Sbjct: 150 AKNVL---IDGVLGSGKTWVALDVCLSYKVQCKMDFK----IFWLNLKNCNSPETVLEML 202

Query: 178 VSLW-IVRSIGAPSTEIAVSELSRASAEVSEIVFFLLG-----AMTIV------EIVDAH 225
             L   +       ++ + +   R  +  +E+   L        + ++      +  +A 
Sbjct: 203 QKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA- 261

Query: 226 QGF----KLVTDNITTRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKLVPPSEYR 281
             F    K++   +TTR  +        VT FLS+     T+ I +      L P  E +
Sbjct: 262 --FNLSCKIL---LTTRFKQ--------VTDFLSA---ATTTHISLDHHSMTLTPD-EVK 304

Query: 282 KLLGAVVVIAANAGGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSL 341
            LL                         ++  +   LP          ++   P   LS+
Sbjct: 305 SLLL-----------------------KYLDCRPQDLP-------REVLTTN-PRR-LSI 332

Query: 342 TSE--------------VNGKGQ----ESS-NVLASEQMAPRGQLVFAVGIGALIFVPVF 382
            +E              VN        ESS NVL   +                     F
Sbjct: 333 IAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKM-----------------F 375

Query: 383 KALTGLPPYMGILLG-LGVLWILTDAIHYGESER--QKLKVPQALSRIDTQGALFFLGIL 439
             L+  PP   I    L ++W     +   +      KL     + +   +  +    I 
Sbjct: 376 DRLSVFPPSAHIPTILLSLIW---FDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIY 432

Query: 440 LSVSSLEAAGLLREIANYLDAHISNIDLIASAIGVVSAVIDNVPLVAATMGMYDLTSF-- 497
           L         L  ++ N    H S              ++D+  +       +D      
Sbjct: 433 LE--------LKVKLENEYALHRS--------------IVDHYNIPKT----FDSDDLIP 466

Query: 498 -PQDSKFWQLIAY 509
              D  F+  I +
Sbjct: 467 PYLDQYFYSHIGH 479

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query537
4f35_D449 Transporter, NADC family; transport protein; HET: 100.0
4f35_D449 Transporter, NADC family; transport protein; HET: 99.55
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure
Probab=100.00  E-value=3.8e-45  Score=393.29  Aligned_cols=364  Identities=17%  Similarity=0.154  Sum_probs=278.8

Q ss_pred             HHHHHHHHHHHHHHHHHhhcccCcchHHHHHHHHHHHHHHHhcCCCCHHHHHHHhhhhhccchhHHHHHHHHHHHHHHHH
Q 045863          144 QDLAMALLFGIGYTGIIFEESLAFNKSGVGLLMAVSLWIVRSIGAPSTEIAVSELSRASAEVSEIVFFLLGAMTIVEIVD  223 (537)
Q Consensus       144 ~~~~~l~IFv~~i~~ii~e~~l~ip~~~val~~~~~l~v~gvi~~~~~~~a~~~~~~~ls~~~~~I~li~g~~ii~~~l~  223 (537)
                      +++..+++++.++++|++|+   +|.+++++++.+++.++|+.   +++|+++++.+      +++++++|+|+++.+++
T Consensus        31 ~~~~~lai~~~~~~lw~te~---iP~~vtall~~~l~~l~gv~---~~~~a~~~~~~------~~i~li~g~~~la~al~   98 (449)
T 4f35_D           31 NVVLGISMLAFIAVLWLTEA---LHVTVTAILVPVMAVFFGIF---ETQAALNNFAN------SIIFLFLGGFALAAAMH   98 (449)
T ss_dssp             HHHHHHHHHHHHHHHHTTTS---SCSHHHHHHHHHHHHHTTSS---CHHHHHTTTTC------HHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHhcc---ccHHHHHHHHHHHHHHHCCC---CHHHHHHHccC------HHHHHHHHHHHHHHHHH
Confidence            57889999999999999999   99999999999999999987   88999876654      99999999999999999


Q ss_pred             HhChHHHHHHHHh---cCCchHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHh-----CCChh-HHHHHHHHHHHHHhh
Q 045863          224 AHQGFKLVTDNIT---TRKPRTLLWVIGFVTFFLSSILDNLTSTIVMVSLLRKL-----VPPSE-YRKLLGAVVVIAANA  294 (537)
Q Consensus       224 ~tGl~~ria~~l~---~~~~~~l~~~l~l~~~~lS~fl~N~ta~~im~PI~~~l-----~~p~~-~~~~~l~~va~aan~  294 (537)
                      |+|++||+++++.   +++++++.+.+++.++++|++++|++++++|.|++.++     .+|++ ..+.+++.+++++|+
T Consensus        99 ~tGl~~riA~~il~~~g~~~~~l~~~~~~~~~~lS~~isn~a~~~~~~Pi~~~i~~~~~~~~~~~~~~~lll~~~~aa~i  178 (449)
T 4f35_D           99 HQGLDKVIADKVLAMAQGKMSVAVFMLFGVTALLSMWISNTATAAMMLPLVLGVLSKVDADKQRSTYVFVLLGVAYSASI  178 (449)
T ss_dssp             HHTHHHHHHHHHHHTTCSCTHHHHHHHHHHHHHHHHHSCSHHHHHHHHHHHHHHSCSCCCSSCCSSTTTTHHHHHHHHHH
T ss_pred             HHCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHhcchHHHHHhchHHHHHHHHHhhccchhHHHHHHHHHHHHHhh
Confidence            9999999999885   46889999999999999999999999999999998765     12322 222356899999999


Q ss_pred             ccccccccchhhhhhHhcccCChHHHHHHhhHHHHHHHHHHHHHHHh-hccc-cCCCcCCccccccccCCchhHHHHHHH
Q 045863          295 GGAWTPIGDVTTTMLWIHGQISTLPTMKSLFIPSAVSLAVPLAFLSL-TSEV-NGKGQESSNVLASEQMAPRGQLVFAVG  372 (537)
Q Consensus       295 Gg~~TpiG~~~Nll~~~~~~isf~~~~~~~~pp~lv~l~v~~~ll~~-~~~~-~~~~~~~~~l~~~~~i~~~~~~~~~l~  372 (537)
                      ||.+|++|+|+|++..+..+++|.||+..+.|+.++.+++.+.++++ +||. ++..|..   ++..+.+++++......
T Consensus       179 gg~~t~ig~~~N~i~~~~~~~~f~~~~~~~~p~~li~l~~~~~~l~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~  255 (449)
T 4f35_D          179 GGIATLVGSPPNAIAAAEVGLSFTDWMKFGLPTAMMMLPMAIAILYFLLKPTLNGMFELD---RAPVNWDKGKVVTLGIF  255 (449)
T ss_dssp             HHSSSSSSSHHHHHHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHHTTC-----------------CCCCCTHHHHHHHH
T ss_pred             hhhcccCcCCCcccccccccccHHHhhhhcCchHHHHHHHHHHHHHHHhcccccccchhh---ccchhhhHHHHHHHHHH
Confidence            99999999999999888889999999999999999888877766666 4443 3222111   12223333333333222


Q ss_pred             HHHHHHHHHHh-----hhcCC--ChHHHHHHHHHHHHHHhhhccccchhhccCCHHHHhhcCChHHHHHHHHHHHHHHHH
Q 045863          373 IGALIFVPVFK-----ALTGL--PPYMGILLGLGVLWILTDAIHYGESERQKLKVPQALSRIDTQGALFFLGILLSVSSL  445 (537)
Q Consensus       373 l~~lill~i~~-----~~~gi--~~~~valiga~lLll~~~vl~~~~~~~~~i~~~~~l~~v~W~tLl~f~glf~l~~~L  445 (537)
                      ...+ ++|++.     ...+.  +.+.+++.++.++...+           .++|||+.+++||+++++|+|++.+++++
T Consensus       256 ~l~i-~l~~~~~~l~~~~~~~~~~~~~val~~~~ll~~~~-----------~l~~~~~~~~i~W~~l~~~~g~~~l~~~l  323 (449)
T 4f35_D          256 GLTV-FLWIFSSPINAALGGFKSFDTLVALGAILMLSFAR-----------VVHWKEIQKTADWGVLLLFGGGLCLSNVL  323 (449)
T ss_dssp             HHHH-HHHHHHHHHHHTTCCCSSHHHHHHHHHHHHHHHTT-----------SSCHHHHHHHSCHHHHHHHHHHHHHHHHH
T ss_pred             HHHH-HHHHhhcccccccccccchhHHHHHHHHHHhhhhh-----------ccchhhhhcccCchHHHHhhhHHHHhHHH
Confidence            2222 223222     22233  34556665555554443           35899999999999999999999999999


Q ss_pred             HHhcHHHHHHHHHHhhhhhh--HH----HHHHHHHHHHhHchHHHHHHHHhhhh-c---cCCCCChHHHHHHHHHHHHhh
Q 045863          446 EAAGLLREIANYLDAHISNI--DL----IASAIGVVSAVIDNVPLVAATMGMYD-L---TSFPQDSKFWQLIAYCAGTGG  515 (537)
Q Consensus       446 ~~tG~~~~la~~l~~~i~~~--~~----i~~i~~~lS~~isNtp~va~llpv~~-~---~~~~~~~~~~laLa~~a~iGg  515 (537)
                      +++|+.+|+++.+.+..++.  ..    +.+++.++|+|+||+|++++++|++. .   .+.+ +....+.++++++. +
T Consensus       324 ~~sG~~~~la~~l~~~~~~~~~~~~~~~~~~~~~~ls~f~sn~a~~~~l~Pi~~~~a~~~g~~-p~~~~~~~~~~~s~-~  401 (449)
T 4f35_D          324 KQTGTSVFLANALSDMVSHMGIFVVILVVATFVVFLTEFASNTASAALLIPVFATVAEAFGMS-PVLLSVLIAVAASC-A  401 (449)
T ss_dssp             HHHTHHHHHHHHHHHHHHTTCSHHHHHHHHHTTSEETEECCHHHHHHHHHHHHHHHHHHTTCC-SHHHHHHHHHHHHC-C
T ss_pred             HhcCCHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCC-HHHHHHHHHHHHHH-H
Confidence            99999999999998766432  11    23344667899999999999999973 1   3443 44555666777774 6


Q ss_pred             hhhHHhHHHHHHHHhhcCccc
Q 045863          516 SMLIIGSAAGVAFMGMEKVDF  536 (537)
Q Consensus       516 ~lTpiGS~an~i~~g~~~~~f  536 (537)
                      ++||+|+++|.+++|.++++|
T Consensus       402 ~~~p~~t~~n~i~~g~g~~~~  422 (449)
T 4f35_D          402 FMLPVATPPNAIVFASGHIKQ  422 (449)
T ss_dssp             CSSSSSSHHHHHHCSSGGGGT
T ss_pred             hHhhhhhHHHHHHHhcCCCCH
Confidence            799999999999999999887
>4f35_D Transporter, NADC family; transport protein; HET: BNG CIT; 3.20A {Vibrio cholerae} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00