Citrus Sinensis ID: 045880

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140--
Protein Sequence
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHcHHHEEEccccccEEEEEEEEEcccccccccccccHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHHHHHHHHHHHHHHHHHHHcc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHccHHHEEcccccccEEEEEEEcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccHEEEEEHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDvfenhqpsslipgatLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTtvsgvlnedygrpilLEEIAFHIFAISLLVYLCFLGTTLI
Flexible Loop (DISEMBL)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Low Complexity Region (SEG)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Disordered region (IsUnstruct)
**VIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTT**
Disordered Region (DISOPRED)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQ*************YEIKWYKEHFTK***********WLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Disordered Region (DISEMBL)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Disordered Region (DISPRO)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooHHHHHHHHHHHHHHHHHHHHHi
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHi
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQPSSLIPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
147864056	537	hypothetical protein VITISV_019046 [Viti	0.985	0.260	0.453	6e-27
359495447	733	PREDICTED: uncharacterized protein LOC10	0.964	0.186	0.393	2e-25
147841950	714	hypothetical protein VITISV_026950 [Viti	0.992	0.197	0.385	3e-25
359476634	969	PREDICTED: uncharacterized protein LOC10	0.964	0.141	0.383	6e-25
297743742	351	unnamed protein product [Vitis vinifera]	0.950	0.384	0.407	7e-25
147776365	800	hypothetical protein VITISV_007268 [Viti	0.950	0.168	0.407	1e-24
359484885	1020	PREDICTED: uncharacterized protein LOC10	0.950	0.132	0.407	2e-24
359479721	749	PREDICTED: uncharacterized protein LOC10	0.950	0.180	0.408	2e-24
359484881	741	PREDICTED: uncharacterized protein LOC10	0.950	0.182	0.393	4e-24
224066419	360	predicted protein [Populus trichocarpa]	0.964	0.380	0.379	4e-24

>gi|147864056|emb|CAN83220.1| hypothetical protein VITISV_019046 [Vitis vinifera]

 Score =  125 bits (314), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 73/161 (45%), Positives = 93/161 (57%), Gaps = 21/161 (13%)

Query: 3   VIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD--------VFENHQPSSL--------- 45
           V E+V+ IL+ F VAI + +   KN+VLLA  +        V +N   S+L         
Sbjct: 286 VKEMVDSILEEFPVAIHDRNKEKKNVVLLAVENRQPEVVFGVVDNEGNSALHLGATLGDY 345

Query: 46  ----IPGATLQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAAS 101
               IPGA LQMQ+EIKWYK  FT  H +L  RG KWL  TS +C V A LIA VAFA S
Sbjct: 346 QPWHIPGAALQMQWEIKWYKRIFTNHHTELVSRGGKWLNDTSSSCSVVATLIATVAFATS 405

Query: 102 TTVSGVLNEDYGRPILLEEIAFHIFAISLLVYLCFLGTTLI 142
           TT+ G    + GR  L  + AF++FAIS L+ LCF  TT++
Sbjct: 406 TTIPGSFKNNNGRRNLEHQAAFNLFAISSLIALCFSVTTMV 446

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359495447|ref|XP_002274376.2| PREDICTED: uncharacterized protein LOC100254555 [Vitis vinifera]

 Score =  120 bits (302), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 102/201 (50%), Gaps = 64/201 (31%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G+ E+V +ILD F VAIQ+ ++  KN+VLLA     EN QP                   
Sbjct: 438 GIAEMVREILDRFPVAIQDMNSEHKNMVLLA----VENRQPHVYELLLNRKIQKDTVFRI 493

Query: 43  ------SSL-------------IPGATLQMQYEIKWY----------------------K 61
                 S+L             IPGA LQMQ+EIKW+                      K
Sbjct: 494 VDKDGNSALHLAAMLRDNLPWHIPGAALQMQWEIKWFDYVKNSMPIHFFPHYNANNQTPK 553

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEI 121
           E F ++HK+L ++G KWL  TS +C V + LIA VAFA S TV G + ED G+PIL  + 
Sbjct: 554 EVFNESHKELVEKGGKWLKATSDSCSVVSALIATVAFATSATVPGGIKEDSGKPILERQP 613

Query: 122 AFHIFAISLLVYLCFLGTTLI 142
           AF IFAIS LV LCF  T+++
Sbjct: 614 AFRIFAISSLVALCFSVTSVV 634

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147841950|emb|CAN67508.1| hypothetical protein VITISV_026950 [Vitis vinifera]

 Score =  119 bits (299), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 76/197 (38%), Positives = 98/197 (49%), Gaps = 56/197 (28%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD---------------------VFENH 40
           GV E+V+ IL+ F VAI + +   KN+VLLA  +                     V +N 
Sbjct: 419 GVKEMVDSILEKFPVAIHDRNKEKKNLVLLAVENRQPEVYELLLKKNILKDSVFGVVDNE 478

Query: 41  QPSSL-------------IPGATLQMQYEIKWYK----------------------EHFT 65
             S+L             IPGA LQMQ+EIKWYK                      E FT
Sbjct: 479 GNSALHLAAMLGDYQPWHIPGAALQMQWEIKWYKFVKNSMPPHFFSHYNNKNQTPKEIFT 538

Query: 66  KTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHI 125
             H +L +RG KWL  TS +C V A LIA VAFA S T+ G  NE+ GRP    ++AF++
Sbjct: 539 DHHNELVRRGGKWLNNTSSSCSVIATLIATVAFATSATIPGSFNEEXGRPNFEHQLAFNL 598

Query: 126 FAISLLVYLCFLGTTLI 142
           FAIS LV LCF  T+++
Sbjct: 599 FAISSLVALCFSVTSMV 615

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359476634|ref|XP_002273692.2| PREDICTED: uncharacterized protein LOC100246246 [Vitis vinifera]

 Score =  118 bits (296), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 77/201 (38%), Positives = 97/201 (48%), Gaps = 64/201 (31%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G+ E+V+ IL+ F VAI + +   KN+VLLA     EN QP                   
Sbjct: 429 GIKEMVDSILEKFPVAIHDRNKEKKNVVLLA----VENRQPEVYEILLKKNILKDSVFGV 484

Query: 43  ------SSL-------------IPGATLQMQYEIKWYK---------------------- 61
                 S+L             IPGA LQMQ+EIKWYK                      
Sbjct: 485 VDNEGNSALHLAAMLGDYQPWHIPGAALQMQWEIKWYKFVKNSMPPHFFSHYNNKNQTPK 544

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEI 121
           E FT  H +L +RG KWL  TS +C V A LIA VAFA S T+ G  NE  GRP    ++
Sbjct: 545 EIFTDHHDELVRRGGKWLNNTSSSCSVIATLIATVAFATSATIPGSFNEGTGRPNFEHQL 604

Query: 122 AFHIFAISLLVYLCFLGTTLI 142
           AF++FAIS LV LCF  T+++
Sbjct: 605 AFNLFAISSLVALCFSVTSMV 625

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297743742|emb|CBI36625.3| unnamed protein product [Vitis vinifera]

 Score =  118 bits (296), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 101/201 (50%), Gaps = 66/201 (32%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G+ EIVE IL  F VAI + ++  KNIVLLA     EN QP                   
Sbjct: 53  GIKEIVELILKHFPVAIHDMNSQKKNIVLLAA----ENRQPHLIDLLIQKNSSESVFHTV 108

Query: 43  -----SSL--------------IPGATLQMQYEIKWY----------------------K 61
                S+L              +PGA LQMQ+EIKWY                      K
Sbjct: 109 DIKGNSALHLAANYDPSLNPWTLPGAALQMQWEIKWYEYVKSSVGPDFLMLYNNDGKTAK 168

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEI 121
           E FT THK L K G KWL+KTS +C V A LIA VAFA S T+ G  + + G+P+L +E+
Sbjct: 169 EIFTTTHKDLVKEGGKWLLKTSDSCSVVAALIATVAFATSATIPG--STEQGKPVLGKEL 226

Query: 122 AFHIFAISLLVYLCFLGTTLI 142
           AF +FAIS LV LCF  T+L+
Sbjct: 227 AFQVFAISSLVSLCFSVTSLV 247

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147776365|emb|CAN76466.1| hypothetical protein VITISV_007268 [Vitis vinifera]

 Score =  117 bits (294), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 101/201 (50%), Gaps = 66/201 (32%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G+ EIVE IL  F VAI + ++  KNIVLLA     EN QP                   
Sbjct: 463 GIKEIVELILKHFPVAIHDMNSQKKNIVLLAA----ENRQPHLIDLLIQKNSSESVFHTV 518

Query: 43  -----SSL--------------IPGATLQMQYEIKWY----------------------K 61
                S+L              +PGA LQMQ+EIKWY                      K
Sbjct: 519 DIKGNSALHLAANYDPSLNPWTLPGAALQMQWEIKWYEYVKSSVGPDFLMLYNNDGKTAK 578

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEI 121
           E FT THK L K G KWL+KTS +C V A LIA VAFA S T+ G  + + G+P+L +E+
Sbjct: 579 EIFTTTHKDLVKEGGKWLLKTSDSCSVVAALIATVAFATSATIPG--STEQGKPVLGKEL 636

Query: 122 AFHIFAISLLVYLCFLGTTLI 142
           AF +FAIS LV LCF  T+L+
Sbjct: 637 AFQVFAISSLVSLCFSVTSLV 657

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484885|ref|XP_003633180.1| PREDICTED: uncharacterized protein LOC100854873 [Vitis vinifera]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 82/201 (40%), Positives = 101/201 (50%), Gaps = 66/201 (32%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G+ EIVE IL  F VAI + ++  KNIVLLA     EN QP                   
Sbjct: 424 GIKEIVELILKHFPVAIHDMNSQKKNIVLLAA----ENRQPHLIDLLIQKNSSESVFHTV 479

Query: 43  -----SSL--------------IPGATLQMQYEIKWY----------------------K 61
                S+L              +PGA LQMQ+EIKWY                      K
Sbjct: 480 DIKGNSALHLAANYDPSLNPWTLPGAALQMQWEIKWYEYVKSSVGPDFLMLYNNDGKTAK 539

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEI 121
           E FT THK L K G KWL+KTS +C V A LIA VAFA S T+ G  + + G+P+L +E+
Sbjct: 540 EIFTTTHKDLVKEGGKWLLKTSDSCSVVAALIATVAFATSATIPG--STEQGKPVLGKEL 597

Query: 122 AFHIFAISLLVYLCFLGTTLI 142
           AF +FAIS LV LCF  T+L+
Sbjct: 598 AFQVFAISSLVSLCFSVTSLV 618

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359479721|ref|XP_002272096.2| PREDICTED: uncharacterized protein LOC100255529 [Vitis vinifera]

 Score =  117 bits (292), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 78/191 (40%), Positives = 95/191 (49%), Gaps = 56/191 (29%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLA------------------------YTDVF 37
           GV+EIVE+IL+ F VAI ++D   KNIVLLA                        + D+ 
Sbjct: 453 GVVEIVERILELFPVAIHDKDYQKKNIVLLAVEYRQPHVYELLVKRKVLKDAVFRHVDID 512

Query: 38  EN----------HQPSSLIPGATLQMQYEIKWY----------------------KEHFT 65
            N               LIPGA LQMQ+EIKWY                      K+ FT
Sbjct: 513 GNSALHLAAMLGENKPWLIPGAALQMQWEIKWYEFVKRSVPQHFFVRCNQKGETAKDIFT 572

Query: 66  KTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEIAFHI 125
           + H  L + G +WL KTS++C V A LIA VAFA S+TV G + E  G P L +E AF I
Sbjct: 573 EKHMDLVQAGGEWLFKTSESCSVVAALIATVAFATSSTVPGGVKEKVGTPTLEDEPAFDI 632

Query: 126 FAISLLVYLCF 136
           FAIS LV LCF
Sbjct: 633 FAISSLVALCF 643

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359484881|ref|XP_002270267.2| PREDICTED: uncharacterized protein LOC100245091 [Vitis vinifera]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 79/201 (39%), Positives = 102/201 (50%), Gaps = 66/201 (32%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G+IE+VE IL+ F  AI ++++  KNIVLLA     EN QP                   
Sbjct: 441 GIIEMVELILNRFPTAIYDKNSKKKNIVLLAA----ENRQPHLFDLLKHKKINETVFHAV 496

Query: 43  -----SSL--------------IPGATLQMQYEIKWYK---------------------- 61
                S+L              IPG  LQMQ+EIKWY+                      
Sbjct: 497 DSDGNSALHLAANYNQSLNPWTIPGTALQMQWEIKWYRYVKSCVGPNSLMLYNNKGKTAM 556

Query: 62  EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLEEI 121
           E FT+THK+L K G +WL+KTS +C V A LIA VAF AS TV G  + + G+P+L  ++
Sbjct: 557 EIFTETHKQLIKEGGEWLLKTSDSCSVVAALIATVAFTASATVPG--STEKGKPVLENDL 614

Query: 122 AFHIFAISLLVYLCFLGTTLI 142
           AF +F+IS LV LCF  T LI
Sbjct: 615 AFRVFSISSLVSLCFSVTALI 635

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224066419|ref|XP_002302098.1| predicted protein [Populus trichocarpa] gi|222843824|gb|EEE81371.1| predicted protein [Populus trichocarpa]

 Score =  115 bits (289), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 77/203 (37%), Positives = 102/203 (50%), Gaps = 66/203 (32%)

Query: 2   GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTDVFENHQP------------------- 42
           G++E+VEKI++ F VAI + +   KNIVLL+     EN QP                   
Sbjct: 63  GIVEMVEKIIEKFPVAINDVNAEKKNIVLLSV----ENRQPHVYQFLLSLKRNIVKESIF 118

Query: 43  --------SSL-------------IPGATLQMQYEIKWY--------------------- 60
                   S+L             IPGA LQMQ+EIKW+                     
Sbjct: 119 RQVDSKGNSALHLAATLGDFKPWSIPGAALQMQWEIKWFEFVKDSMPPNFFVRYNKEGKT 178

Query: 61  -KEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGRPILLE 119
            ++ FT+THK L K G +WL  TS++C V A LIA VAFA S+TV G +NE  G PIL  
Sbjct: 179 PRDIFTETHKDLVKSGGEWLTNTSESCSVVAALIATVAFATSSTVPGGVNEITGSPILEY 238

Query: 120 EIAFHIFAISLLVYLCFLGTTLI 142
           + AF +FAIS L+ LCF  T+++
Sbjct: 239 QPAFKMFAISSLIALCFSVTSVV 261

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	142
TAIR|locus:2175413	669	AT5G04700 "AT5G04700" [Arabido	0.563	0.119	0.378	1.2e-11
TAIR|locus:2165174	347	AT5G35810 "AT5G35810" [Arabido	0.556	0.227	0.369	1.5e-11
TAIR|locus:2180228	625	AT5G04690 "AT5G04690" [Arabido	0.563	0.128	0.365	2.2e-11
TAIR|locus:2175448	603	AT5G04730 "AT5G04730" [Arabido	0.535	0.126	0.342	4.5e-10
TAIR|locus:2080240	574	AT3G54070 "AT3G54070" [Arabido	0.457	0.113	0.383	1.1e-08

TAIR|locus:2175413 AT5G04700 "AT5G04700" [Arabidopsis thaliana (taxid:3702)]

 Score = 126 (49.4 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
 Identities = 31/82 (37%), Positives = 45/82 (54%)

Query:    62 EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDY-GRPILLEE 120
             E FTK H+ L +   KW+  T+ +C + A LI  V FAA  TV G  +++  G+P  L +
Sbjct:   488 EIFTKEHQGLRQEAEKWMKDTAMSCSLVAALIVTVTFAAVFTVPGGTDDNSKGKPFHLRD 547

Query:   121 IAFHIFAISLLVYLCFLGTTLI 142
               F IF +S L+  CF   T +
Sbjct:   548 RRFIIFIVSDLIS-CFASCTSV 568

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2165174 AT5G35810 "AT5G35810" [Arabidopsis thaliana (taxid:3702)]

 Score = 119 (46.9 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
 Identities = 31/84 (36%), Positives = 45/84 (53%)

Query:    64 FTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLN-----EDYGRPILL 118
             FTK H  L K G KW+ +T+ AC + + LIA V FAA+ T+ G  +     +  G P   
Sbjct:   162 FTKEHDNLRKEGEKWMKETATACILVSTLIATVVFAAAFTLPGGNDTSGDIKTLGFPTFR 221

Query:   119 EEIAFHIFAISLLVYLCFLGTTLI 142
             +E  F +F IS  V L    T+++
Sbjct:   222 KEFWFEVFIISDSVALLSSVTSIM 245

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2180228 AT5G04690 "AT5G04690" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
 Identities = 30/82 (36%), Positives = 42/82 (51%)

Query:    62 EHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYG-RPILLEE 120
             E F K H+ +     KW+  T+ +C + A LI  V FAA  TV G  +++ G RP    E
Sbjct:   446 EIFRKEHEAMRLEAEKWMKDTAMSCSLVAALIVTVTFAAIFTVPGGTDDNSGGRPFHRHE 505

Query:   121 IAFHIFAISLLVYLCFLGTTLI 142
               F IF +S L+  CF   T +
Sbjct:   506 RIFVIFIVSDLIS-CFAACTSV 526

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2175448 AT5G04730 "AT5G04730" [Arabidopsis thaliana (taxid:3702)]

 Score = 115 (45.5 bits), Expect = 4.5e-10, Sum P(2) = 4.5e-10
 Identities = 26/76 (34%), Positives = 40/76 (52%)

Query:    51 LQMQYEIKWYKEHFTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNE 110
             +Q   + K  ++ F   H+ L K G +W+  T+ AC   A LIA V F A  TV G ++ 
Sbjct:   412 VQKNKDNKTPRQIFEHYHEHLRKEGEEWMKYTATACSFVAALIATVTFQAIFTVPGGIDG 471

Query:   111 DYGRPILLEEIAFHIF 126
               G P++L ++ F  F
Sbjct:   472 TSGSPLILNDLHFRAF 487

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

TAIR|locus:2080240 AT3G54070 "AT3G54070" [Arabidopsis thaliana (taxid:3702)]

 Score = 116 (45.9 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
 Identities = 28/73 (38%), Positives = 41/73 (56%)

Query:    64 FTKTHKKLGKRGSKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNEDYGR-------PI 116
             FT+ H+ L K G +W+ +T+ AC + A LIA V FAA+ T+ G  N+D G        P 
Sbjct:   386 FTEQHENLRKEGERWMKETATACMLGATLIATVVFAAAITIPGG-NDDSGDKANTLGFPN 444

Query:   117 LLEEIAFHIFAIS 129
               + + F IF +S
Sbjct:   445 FRKRLLFDIFTLS 457

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: GSVIVG00023793001 SubName- Full=Chromosome chr7 scaffold_31, whole genome shotgun sequence; (644 aa) (Vitis vinifera)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	142
pfam13962	114	pfam13962, PGG, Domain of unknown function	3e-07

>gnl|CDD|222475 pfam13962, PGG, Domain of unknown function

 Score = 45.6 bits (109), Expect = 3e-07
 Identities = 24/60 (40%), Positives = 29/60 (48%), Gaps = 6/60 (10%)

Query: 76  SKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNED-----YGRPILLEEI-AFHIFAIS 129
           S+WL KT  +  V A LIA V FAA  T  G   +D      G PIL  +   F  F +S
Sbjct: 1   SEWLEKTRNSLLVVATLIATVTFAAGFTPPGGYWQDDGGHHAGTPILAGKPRRFKAFFVS 60

The PGG domain is named for the highly conserved sequence motif found at the startt of the domain. The function is not known. Length = 114

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	142
PF13962	113	PGG: Domain of unknown function	99.88
PF13637	54	Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A	97.67
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	97.26
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	96.73
PHA02876	682	ankyrin repeat protein; Provisional	96.47
PF13857	56	Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A	96.17
KOG4412	226	consensus 26S proteasome regulatory complex, subun	95.11
PHA02741	169	hypothetical protein; Provisional	94.74
KOG0515	752	consensus p53-interacting protein 53BP/ASPP, conta	94.6
KOG4412	226	consensus 26S proteasome regulatory complex, subun	94.52
PF12796	89	Ank_2: Ankyrin repeats (3 copies); InterPro: IPR02	93.95
PHA02741	169	hypothetical protein; Provisional	93.94
PHA02736	154	Viral ankyrin protein; Provisional	93.72
PHA02743	166	Viral ankyrin protein; Provisional	93.36
COG0666	235	Arp FOG: Ankyrin repeat [General function predicti	93.26
PHA02874	434	ankyrin repeat protein; Provisional	93.11
PLN03192	823	Voltage-dependent potassium channel; Provisional	92.58
PHA02875	413	ankyrin repeat protein; Provisional	92.56
PHA02878	477	ankyrin repeat protein; Provisional	92.53
PHA02878	477	ankyrin repeat protein; Provisional	92.43
PHA02743	166	Viral ankyrin protein; Provisional	92.42
PHA02946	446	ankyin-like protein; Provisional	92.4
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	92.38
PHA02859	209	ankyrin repeat protein; Provisional	91.9
PHA02791	284	ankyrin-like protein; Provisional	91.75
PHA02859	209	ankyrin repeat protein; Provisional	91.62
PHA02875	413	ankyrin repeat protein; Provisional	91.52
PHA03100	480	ankyrin repeat protein; Provisional	91.41
PLN03192	823	Voltage-dependent potassium channel; Provisional	91.37
PHA02946	446	ankyin-like protein; Provisional	91.35
PF13606	30	Ank_3: Ankyrin repeat	91.06
PHA02874	434	ankyrin repeat protein; Provisional	90.86
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	90.54
PHA02795	437	ankyrin-like protein; Provisional	90.39
PHA02791	284	ankyrin-like protein; Provisional	90.27
KOG0195	448	consensus Integrin-linked kinase [Signal transduct	89.92
PHA02736	154	Viral ankyrin protein; Provisional	89.82
PF00023	33	Ank: Ankyrin repeat Hereditary spherocytosis; Inte	89.46
cd00204	126	ANK ankyrin repeats; ankyrin repeats mediate prote	89.23
PHA02798	489	ankyrin-like protein; Provisional	88.74
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	88.25
PHA02989	494	ankyrin repeat protein; Provisional	88.18
PHA02798	489	ankyrin-like protein; Provisional	88.15
PHA03100	480	ankyrin repeat protein; Provisional	88.08
PHA03095	471	ankyrin-like protein; Provisional	88.08
PHA02795	437	ankyrin-like protein; Provisional	87.62
PHA02716	764	CPXV016; CPX019; EVM010; Provisional	86.4
PTZ00322	664	6-phosphofructo-2-kinase/fructose-2,6-biphosphatas	85.89
PHA02989	494	ankyrin repeat protein; Provisional	85.8
PHA02876	682	ankyrin repeat protein; Provisional	85.59
KOG0514	452	consensus Ankyrin repeat protein [General function	85.26
PHA02730	672	ankyrin-like protein; Provisional	84.45
PHA02884	300	ankyrin repeat protein; Provisional	84.41
TIGR00870	743	trp transient-receptor-potential calcium channel p	84.39
KOG0512	228	consensus Fetal globin-inducing factor (contains a	83.98
KOG4177	1143	consensus Ankyrin [Cell wall/membrane/envelope bio	83.85
KOG0782	1004	consensus Predicted diacylglycerol kinase [Signal	83.02
KOG0510	929	consensus Ankyrin repeat protein [General function	83.02
PHA03095	471	ankyrin-like protein; Provisional	82.38
PHA02917	661	ankyrin-like protein; Provisional	81.48
PHA02884	300	ankyrin repeat protein; Provisional	80.35
KOG0514	452	consensus Ankyrin repeat protein [General function	80.07

>PF13962 PGG: Domain of unknown function

Probab=99.88  E-value=5.7e-23  Score=149.02  Aligned_cols=67  Identities=36%  Similarity=0.462  Sum_probs=62.2

Q ss_pred             hHHHHhhhhhhHHHHHHHHHHHHHhhhccCCcccCC---CCcccccccc-hhhHHHHHHHHHHHHHhhhcC
Q 045880           76 SKWLIKTSKACFVFAMLIANVAFAASTTVSGVLNED---YGRPILLEEI-AFHIFAISLLVYLCFLGTTLI  142 (142)
Q Consensus        76 ~~~~k~~~~s~~vvA~LIATvtFaAaftvPGG~~~~---~G~~~l~~~~-~F~~F~i~~~~a~~~S~~av~  142 (142)
                      +||+++++|+++|||+|||||||+|+||+||||+++   .|+|++.+++ .|++|+++|++||++|+++++
T Consensus         1 ~~~~~~~~~~llVvAtLIATvtF~A~~tpPGG~~~~~~~~G~~il~~~~~~f~~F~~~nt~af~~S~~~i~   71 (113)
T PF13962_consen    1 KKWLEDTRNSLLVVATLIATVTFQAAFTPPGGYWQDDDDAGTPILAKKPSAFKAFLISNTIAFFSSLAAIF   71 (113)
T ss_pred             ChHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCccccccCCCCchhccccchhhhHHHHHHHHHHHHHHHHH
Confidence            589999999999999999999999999999999654   7999998888 999999999999999998763

>PF13637 Ank_4: Ankyrin repeats (many copies); PDB: 3B95_A 3B7B_A 3F6Q_A 2KBX_A 3IXE_A 2DWZ_C 2DVW_A 3AJI_A 1S70_B 2HE0_A

Probab=97.67  E-value=5.1e-05  Score=47.33  Aligned_cols=33  Identities=27%  Similarity=0.364  Sum_probs=24.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+++.|+++..| +..+|.+|+|+||+|+.
T Consensus        11 ~g~~~~~~~Ll~~~~d-in~~d~~g~t~lh~A~~   43 (54)
T PF13637_consen   11 SGNLEIVKLLLEHGAD-INAQDEDGRTPLHYAAK   43 (54)
T ss_dssp             TT-HHHHHHHHHTTSG-TT-B-TTS--HHHHHHH
T ss_pred             hCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            5899999999999888 55559999999999994

...

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=97.26  E-value=0.00024  Score=45.03  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=19.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLA   32 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvA   32 (142)
                      +|+.|+|+.|+ ..+.-+..+|++|+|+||+|
T Consensus        26 ~g~~~~v~~Ll-~~g~d~~~~d~~G~Tpl~~A   56 (56)
T PF13857_consen   26 YGHSEVVRLLL-QNGADPNAKDKDGQTPLHYA   56 (56)
T ss_dssp             HT-HHHHHHHH-HCT--TT---TTS--HHHH-
T ss_pred             cCcHHHHHHHH-HCcCCCCCCcCCCCCHHHhC
Confidence            48999999999 77888999999999999998

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=96.73  E-value=0.0018  Score=43.18  Aligned_cols=28  Identities=21%  Similarity=0.170  Sum_probs=17.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++++.|++..++.-.     |+|+||+|+
T Consensus         7 ~~~~~~~~~ll~~~~~~~~-----~~~~l~~A~   34 (89)
T PF12796_consen    7 NGNLEILKFLLEKGADINL-----GNTALHYAA   34 (89)
T ss_dssp             TTTHHHHHHHHHTTSTTTS-----SSBHHHHHH
T ss_pred             cCCHHHHHHHHHCcCCCCC-----CCCHHHHHH
Confidence            4667777777776554433     667777777

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02876 ankyrin repeat protein; Provisional

Probab=96.47  E-value=0.00094  Score=60.55  Aligned_cols=33  Identities=21%  Similarity=0.195  Sum_probs=31.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      .|++|+|++|++.||++....|.+|+|+||+|.
T Consensus        51 ~g~~e~V~~ll~~~~~~~~~~~~~~~tpLh~a~   83 (682)
T PHA02876         51 LRQIDIVEEIIQQNPELIYITDHKCHSTLHTIC   83 (682)
T ss_pred             HHhhhHHHHHHHhCcccchhhchhhcccccccc
Confidence            389999999999999999999999999999877

>PF13857 Ank_5: Ankyrin repeats (many copies); PDB: 1SW6_A 3EHR_B 3EHQ_A

Probab=96.17  E-value=0.0028  Score=40.02  Aligned_cols=26  Identities=15%  Similarity=0.151  Sum_probs=12.6

Q ss_pred             HHHhCcccceeccCCCCchhHHHHHH
Q 045880           10 ILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus        10 ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      ||+..|.-+...|.+|+|+||+|+++
T Consensus         1 LL~~~~~~~n~~d~~G~T~LH~A~~~   26 (56)
T PF13857_consen    1 LLEHGPADVNAQDKYGNTPLHWAARY   26 (56)
T ss_dssp             -----T--TT---TTS--HHHHHHHH
T ss_pred             CCccCcCCCcCcCCCCCcHHHHHHHc
Confidence            56777888999999999999999954

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=95.11  E-value=0.013  Score=47.29  Aligned_cols=31  Identities=19%  Similarity=0.264  Sum_probs=18.2

Q ss_pred             ChHHHHHHHHHh-CcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDA-FLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~-~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+-|+|++|+.+ -|| .+..+++|+|.||+|+
T Consensus        83 g~~evVk~Ll~r~~ad-vna~tn~G~T~LHyAa  114 (226)
T KOG4412|consen   83 GNDEVVKELLNRSGAD-VNATTNGGQTCLHYAA  114 (226)
T ss_pred             CcHHHHHHHhcCCCCC-cceecCCCcceehhhh
Confidence            566666666666 222 3445566666666666

>PHA02741 hypothetical protein; Provisional

Probab=94.74  E-value=0.03  Score=42.21  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=27.4

Q ss_pred             CChHHHHHHHHHhC-----cccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAF-----LVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~-----P~~~~~~D~~g~niLHvAv~   34 (142)
                      .|+.|+|+.++...     ...+..+|..|+|+||+|+.
T Consensus        31 ~g~~~~v~~l~~~~~~~~~ga~in~~d~~g~T~Lh~A~~   69 (169)
T PHA02741         31 CGCFDIIARFTPFIRGDCHAAALNATDDAGQMCIHIAAE   69 (169)
T ss_pred             cCCHHHHHHHHHHhccchhhhhhhccCCCCCcHHHHHHH
Confidence            48899999987542     24578899999999999994

>KOG0515 consensus p53-interacting protein 53BP/ASPP, contains ankyrin and SH3 domains [Cell cycle control, cell division, chromosome partitioning]

Probab=94.60  E-value=0.023  Score=52.06  Aligned_cols=31  Identities=23%  Similarity=0.259  Sum_probs=27.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      ||.|||++|++.-- -++--|++|||+||+|+
T Consensus       594 ghyeIVkFLi~~ga-nVNa~DSdGWTPLHCAA  624 (752)
T KOG0515|consen  594 GHYEIVKFLIEFGA-NVNAADSDGWTPLHCAA  624 (752)
T ss_pred             chhHHHHHHHhcCC-cccCccCCCCchhhhhh
Confidence            89999999998743 36778999999999999

>KOG4412 consensus 26S proteasome regulatory complex, subunit PSMD10 [Posttranslational modification, protein turnover, chaperones]

Probab=94.52  E-value=0.027  Score=45.47  Aligned_cols=31  Identities=26%  Similarity=0.249  Sum_probs=25.4

Q ss_pred             ChHHHHHHHHHhCcc-cceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLV-AIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~-~~~~~D~~g~niLHvAv   33 (142)
                      |++|||+.|++ -|. -...-|+.||++||+|+
T Consensus        49 g~~eiv~fLls-q~nv~~ddkDdaGWtPlhia~   80 (226)
T KOG4412|consen   49 GHVEIVYFLLS-QPNVKPDDKDDAGWTPLHIAA   80 (226)
T ss_pred             CchhHHHHHHh-cCCCCCCCccccCCchhhhhh
Confidence            78899999997 454 36677999999999998

>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain

Probab=93.95  E-value=0.072  Score=35.29  Aligned_cols=33  Identities=27%  Similarity=0.330  Sum_probs=28.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+++.|++.-++. ...|.+|+|+||+|++
T Consensus        36 ~~~~~~~~~Ll~~g~~~-~~~~~~g~t~L~~A~~   68 (89)
T PF12796_consen   36 NGNLEIVKLLLENGADI-NSQDKNGNTALHYAAE   68 (89)
T ss_dssp             TTTHHHHHHHHHTTTCT-T-BSTTSSBHHHHHHH
T ss_pred             cCCHHHHHHHHHhcccc-cccCCCCCCHHHHHHH
Confidence            58999999999987655 7778999999999994

These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....

>PHA02741 hypothetical protein; Provisional

Probab=93.94  E-value=0.057  Score=40.66  Aligned_cols=29  Identities=21%  Similarity=0.361  Sum_probs=23.1

Q ss_pred             HHHHHHHHHhCcccceeccC-CCCchhHHHH
Q 045880            4 IEIVEKILDAFLVAIQEEDT-NGKNIVLLAY   33 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D~-~g~niLHvAv   33 (142)
                      .++++.|++.-.+ +...|. +|+|+||+|+
T Consensus        77 ~~ii~~Ll~~gad-in~~~~~~g~TpLh~A~  106 (169)
T PHA02741         77 AEIIDHLIELGAD-INAQEMLEGDTALHLAA  106 (169)
T ss_pred             HHHHHHHHHcCCC-CCCCCcCCCCCHHHHHH
Confidence            5788888887665 466674 8999999999

>PHA02736 Viral ankyrin protein; Provisional

Probab=93.72  E-value=0.064  Score=39.41  Aligned_cols=29  Identities=10%  Similarity=0.061  Sum_probs=22.8

Q ss_pred             HHHHHHHHHhCcccceecc-CCCCchhHHHH
Q 045880            4 IEIVEKILDAFLVAIQEED-TNGKNIVLLAY   33 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D-~~g~niLHvAv   33 (142)
                      +|+++.|++...+. ...| .+|+|+||+|+
T Consensus        71 ~e~v~~Ll~~gadi-n~~~~~~g~T~Lh~A~  100 (154)
T PHA02736         71 QEKLKLLMEWGADI-NGKERVFGNTPLHIAV  100 (154)
T ss_pred             HHHHHHHHHcCCCc-cccCCCCCCcHHHHHH
Confidence            36788888887664 4566 58999999999

>PHA02743 Viral ankyrin protein; Provisional

Probab=93.36  E-value=0.083  Score=39.89  Aligned_cols=29  Identities=14%  Similarity=0.245  Sum_probs=21.1

Q ss_pred             HHHHHHHHHhCcccceecc-CCCCchhHHHH
Q 045880            4 IEIVEKILDAFLVAIQEED-TNGKNIVLLAY   33 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D-~~g~niLHvAv   33 (142)
                      +++|+.|++.-.+ +..+| ..|+|+||+|+
T Consensus        73 ~~~i~~Ll~~Gad-in~~d~~~g~TpLh~A~  102 (166)
T PHA02743         73 VMKIELLVNMGAD-INARELGTGNTLLHIAA  102 (166)
T ss_pred             HHHHHHHHHcCCC-CCCCCCCCCCcHHHHHH
Confidence            3457777776543 56677 58999999999

>COG0666 Arp FOG: Ankyrin repeat [General function prediction only]

Probab=93.26  E-value=0.095  Score=38.32  Aligned_cols=33  Identities=24%  Similarity=0.231  Sum_probs=30.4

Q ss_pred             ChHHHHHHHHHhCc--ccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFL--VAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P--~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++++.|++.-.  +.....|.+|+|+||.|+.
T Consensus       122 ~~~~~~~~ll~~g~~~~~~~~~~~~g~tpl~~A~~  156 (235)
T COG0666         122 GNIEVAKLLLEAGADLDVNNLRDEDGNTPLHWAAL  156 (235)
T ss_pred             chHHHHHHHHHcCCCCCCccccCCCCCchhHHHHH
Confidence            55999999999999  7899999999999999993

>PHA02874 ankyrin repeat protein; Provisional

Probab=93.11  E-value=0.088  Score=45.09  Aligned_cols=34  Identities=24%  Similarity=0.157  Sum_probs=29.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|++|.|++|++..|..+...|.+|.|+||.|++
T Consensus        11 ~gd~~~v~~ll~~~~~~~n~~~~~~~tpL~~A~~   44 (434)
T PHA02874         11 SGDIEAIEKIIKNKGNCINISVDETTTPLIDAIR   44 (434)
T ss_pred             cCCHHHHHHHHHcCCCCCCCcCCCCCCHHHHHHH
Confidence            5889999999998888888888899999999994

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=92.58  E-value=0.1  Score=49.00  Aligned_cols=33  Identities=24%  Similarity=0.338  Sum_probs=24.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...| .+..|.+|+|+||+|+.
T Consensus       535 ~g~~~~l~~Ll~~G~d-~n~~d~~G~TpLh~Aa~  567 (823)
T PLN03192        535 TGNAALLEELLKAKLD-PDIGDSKGRTPLHIAAS  567 (823)
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            4777888888877555 45677888888888883

>PHA02875 ankyrin repeat protein; Provisional

Probab=92.56  E-value=0.12  Score=43.70  Aligned_cols=32  Identities=28%  Similarity=0.202  Sum_probs=18.7

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++..++.....|.+|+|+||+|+
T Consensus        79 g~~~~v~~Ll~~~~~~~~~~~~~g~tpL~~A~  110 (413)
T PHA02875         79 GDVKAVEELLDLGKFADDVFYKDGMTPLHLAT  110 (413)
T ss_pred             CCHHHHHHHHHcCCcccccccCCCCCHHHHHH
Confidence            55566666666555544455555666666666

>PHA02878 ankyrin repeat protein; Provisional

Probab=92.53  E-value=0.11  Score=45.02  Aligned_cols=33  Identities=9%  Similarity=0.137  Sum_probs=28.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      .|+.|+|+.|+++-.+ +..+|.+|+|+||+|+.
T Consensus        47 ~g~~e~vk~Ll~~gad-vn~~d~~g~TpLh~A~~   79 (477)
T PHA02878         47 ARNLDVVKSLLTRGHN-VNQPDHRDLTPLHIICK   79 (477)
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            4899999999998544 46789999999999994

>PHA02878 ankyrin repeat protein; Provisional

Probab=92.43  E-value=0.13  Score=44.59  Aligned_cols=32  Identities=13%  Similarity=0.004  Sum_probs=19.3

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+++.|++...+ +..+|.+|+|+||+|++
T Consensus       179 ~~~~iv~~Ll~~gad-~n~~d~~g~tpLh~A~~  210 (477)
T PHA02878        179 KDQRLTELLLSYGAN-VNIPDKTNNSPLHHAVK  210 (477)
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            566666666665544 34556666666666663

>PHA02743 Viral ankyrin protein; Provisional

Probab=92.42  E-value=0.14  Score=38.68  Aligned_cols=33  Identities=12%  Similarity=0.106  Sum_probs=22.8

Q ss_pred             ChHHHHHHH---HHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKI---LDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~l---l~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+++.++++   +..++..+...|++|+|+||+|++
T Consensus        31 g~~~~l~~~~~~l~~~g~~~~~~d~~g~t~Lh~Aa~   66 (166)
T PHA02743         31 GNIYELMEVAPFISGDGHLLHRYDHHGRQCTHMVAW   66 (166)
T ss_pred             CCHHHHHHHHHHHhhcchhhhccCCCCCcHHHHHHH
Confidence            555434332   223455678889999999999995

>PHA02946 ankyin-like protein; Provisional

Probab=92.40  E-value=0.12  Score=45.25  Aligned_cols=31  Identities=23%  Similarity=0.213  Sum_probs=20.3

Q ss_pred             hHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            3 VIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         3 ~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      ..|+|+.|+++.++ +...|.+|+|+||+|++
T Consensus        51 ~~~iv~~Ll~~Gad-vn~~d~~G~TpLh~Aa~   81 (446)
T PHA02946         51 DERFVEELLHRGYS-PNETDDDGNYPLHIASK   81 (446)
T ss_pred             CHHHHHHHHHCcCC-CCccCCCCCCHHHHHHH
Confidence            45667777766555 35567777777777773

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=92.38  E-value=0.16  Score=33.79  Aligned_cols=33  Identities=24%  Similarity=0.356  Sum_probs=28.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      .|+.++++.|++..++. ...|..|.++||.|+.
T Consensus        17 ~~~~~~i~~li~~~~~~-~~~~~~g~~~l~~a~~   49 (126)
T cd00204          17 NGHLEVVKLLLENGADV-NAKDNDGRTPLHLAAK   49 (126)
T ss_pred             cCcHHHHHHHHHcCCCC-CccCCCCCcHHHHHHH
Confidence            47889999999998877 7788899999999994

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02859 ankyrin repeat protein; Provisional

Probab=91.90  E-value=0.18  Score=39.53  Aligned_cols=32  Identities=9%  Similarity=-0.028  Sum_probs=15.4

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+++.|+++..+.-..-+.+|+|+||+|+
T Consensus        64 ~~~eiv~~Ll~~gadvn~~~~~~g~TpLh~a~   95 (209)
T PHA02859         64 VNVEILKFLIENGADVNFKTRDNNLSALHHYL   95 (209)
T ss_pred             CCHHHHHHHHHCCCCCCccCCCCCCCHHHHHH
Confidence            34555555555554442222235555555544

>PHA02791 ankyrin-like protein; Provisional

Probab=91.75  E-value=0.17  Score=42.13  Aligned_cols=33  Identities=18%  Similarity=0.145  Sum_probs=21.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++.-.+ +..+|.+|+|+||+|++
T Consensus        71 ~g~~eiV~lLL~~Gad-vn~~d~~G~TpLh~Aa~  103 (284)
T PHA02791         71 LEDTKIVKILLFSGMD-DSQFDDKGNTALYYAVD  103 (284)
T ss_pred             CCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            3667777777764332 34567777777777773

>PHA02859 ankyrin repeat protein; Provisional

Probab=91.62  E-value=0.19  Score=39.33  Aligned_cols=32  Identities=31%  Similarity=0.397  Sum_probs=26.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+++.|+++-.+ +..+|.+|+|+||.|+.
T Consensus       101 ~~~eiv~~Ll~~gad-in~~d~~G~TpLh~a~~  132 (209)
T PHA02859        101 VEPEILKILIDSGSS-ITEEDEDGKNLLHMYMC  132 (209)
T ss_pred             ccHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            578999999987544 57799999999999984

>PHA02875 ankyrin repeat protein; Provisional

Probab=91.52  E-value=0.18  Score=42.59  Aligned_cols=31  Identities=26%  Similarity=0.349  Sum_probs=17.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++..++ ....|..|+|+||+|+
T Consensus       146 ~~~~~v~~Ll~~g~~-~~~~d~~g~TpL~~A~  176 (413)
T PHA02875        146 GDIKGIELLIDHKAC-LDIEDCCGCTPLIIAM  176 (413)
T ss_pred             CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHH
Confidence            555666666655332 3455666666666666

>PHA03100 ankyrin repeat protein; Provisional

Probab=91.41  E-value=0.17  Score=43.37  Aligned_cols=31  Identities=32%  Similarity=0.318  Sum_probs=22.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+++.|++..++. ...|..|+|+||+|+
T Consensus        84 ~~~~iv~~Ll~~ga~i-~~~d~~g~tpL~~A~  114 (480)
T PHA03100         84 DVKEIVKLLLEYGANV-NAPDNNGITPLLYAI  114 (480)
T ss_pred             chHHHHHHHHHCCCCC-CCCCCCCCchhhHHH
Confidence            6677777777776666 667777777777777

>PLN03192 Voltage-dependent potassium channel; Provisional

Probab=91.37  E-value=0.16  Score=47.65  Aligned_cols=33  Identities=18%  Similarity=0.294  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|+++..| ++..|++|+|+||+|++
T Consensus       632 ~g~~~~v~~Ll~~Gad-in~~d~~G~TpLh~A~~  664 (823)
T PLN03192        632 RNDLTAMKELLKQGLN-VDSEDHQGATALQVAMA  664 (823)
T ss_pred             hCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            4889999999998776 46789999999999994

>PHA02946 ankyin-like protein; Provisional

Probab=91.35  E-value=0.18  Score=44.18  Aligned_cols=32  Identities=16%  Similarity=0.002  Sum_probs=27.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|+++-.+ +..+|.+|+|+||+|+
T Consensus        82 ~g~~eiv~lLL~~GAd-in~~d~~g~TpLh~A~  113 (446)
T PHA02946         82 INNNRIVAMLLTHGAD-PNACDKQHKTPLYYLS  113 (446)
T ss_pred             cCCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHH
Confidence            4899999999997544 4678999999999998

>PF13606 Ank_3: Ankyrin repeat

Probab=91.06  E-value=0.15  Score=28.56  Aligned_cols=12  Identities=33%  Similarity=0.470  Sum_probs=10.4

Q ss_pred             CCCchhHHHHHH
Q 045880           24 NGKNIVLLAYTD   35 (142)
Q Consensus        24 ~g~niLHvAv~~   35 (142)
                      +|+|+||+|+++
T Consensus         1 ~G~T~Lh~A~~~   12 (30)
T PF13606_consen    1 NGNTPLHLAASN   12 (30)
T ss_pred             CCCCHHHHHHHh
Confidence            699999999954

>PHA02874 ankyrin repeat protein; Provisional

Probab=90.86  E-value=0.23  Score=42.56  Aligned_cols=33  Identities=21%  Similarity=0.220  Sum_probs=23.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++.-++. ..+|.+|+|+||+|++
T Consensus       134 ~~~~~~v~~Ll~~gad~-n~~d~~g~tpLh~A~~  166 (434)
T PHA02874        134 KGDLESIKMLFEYGADV-NIEDDNGCYPIHIAIK  166 (434)
T ss_pred             CCCHHHHHHHHhCCCCC-CCcCCCCCCHHHHHHH
Confidence            36777787777765553 4567777888888773

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=90.54  E-value=0.24  Score=46.92  Aligned_cols=32  Identities=16%  Similarity=0.128  Sum_probs=26.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|++.-++ +...|++|+|+||+|+
T Consensus       294 ~g~leiVklLLe~GAd-IN~kD~~G~TPLH~Aa  325 (764)
T PHA02716        294 NIDISVVYSFLQPGVK-LHYKDSAGRTCLHQYI  325 (764)
T ss_pred             cCCHHHHHHHHhCCCc-eeccCCCCCCHHHHHH
Confidence            3778889999887766 5678999999999876

>PHA02795 ankyrin-like protein; Provisional

Probab=90.39  E-value=0.26  Score=43.84  Aligned_cols=31  Identities=23%  Similarity=0.303  Sum_probs=18.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+++.|+++-.+ +...|..|+|+||+|+
T Consensus       199 ~~~eIve~LIs~GAD-IN~kD~~G~TpLh~Aa  229 (437)
T PHA02795        199 TVLEIYKLCIPYIED-INQLDAGGRTLLYRAI  229 (437)
T ss_pred             CHHHHHHHHHhCcCC-cCcCCCCCCCHHHHHH
Confidence            456666666665443 3556666666666666

>PHA02791 ankyrin-like protein; Provisional

Probab=90.27  E-value=0.27  Score=40.95  Aligned_cols=29  Identities=14%  Similarity=0.126  Sum_probs=12.8

Q ss_pred             ChHHHHHHHHHhCcccceecc-CCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEED-TNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D-~~g~niLHvAv   33 (142)
                      |+.|+|+.|+++.|+..   | ..|+|+||+|+
T Consensus       139 g~~eivk~LL~~~~~~~---d~~~g~TpLh~Aa  168 (284)
T PHA02791        139 NDVSIVSYFLSEIPSTF---DLAILLSCIHITI  168 (284)
T ss_pred             CCHHHHHHHHhcCCccc---ccccCccHHHHHH
Confidence            44445555554444321   2 13455555555

>KOG0195 consensus Integrin-linked kinase [Signal transduction mechanisms]

Probab=89.92  E-value=0.24  Score=42.81  Aligned_cols=32  Identities=22%  Similarity=0.288  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+-+||..|+++.-| ++-+|.+|+++||+|.
T Consensus        77 hghrdivqkll~~kad-vnavnehgntplhyac  108 (448)
T KOG0195|consen   77 HGHRDIVQKLLSRKAD-VNAVNEHGNTPLHYAC  108 (448)
T ss_pred             cccHHHHHHHHHHhcc-cchhhccCCCchhhhh
Confidence            6999999999998665 5778999999999999

>PHA02736 Viral ankyrin protein; Provisional

Probab=89.82  E-value=0.41  Score=35.08  Aligned_cols=24  Identities=25%  Similarity=0.231  Sum_probs=20.9

Q ss_pred             HHHhCcccceeccCCCCchhHHHH
Q 045880           10 ILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus        10 ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +...++.++..+|++|+|+||+|+
T Consensus        40 ~~~~~~~~~~~~d~~g~t~Lh~a~   63 (154)
T PHA02736         40 ISDENRYLVLEYNRHGKQCVHIVS   63 (154)
T ss_pred             hcchhHHHHHHhcCCCCEEEEeec
Confidence            456667888999999999999999

>PF00023 Ank: Ankyrin repeat Hereditary spherocytosis; InterPro: IPR002110 The ankyrin repeat is one of the most common protein-protein interaction motifs in nature

Probab=89.46  E-value=0.2  Score=27.99  Aligned_cols=11  Identities=18%  Similarity=0.232  Sum_probs=9.9

Q ss_pred             CCCchhHHHHH
Q 045880           24 NGKNIVLLAYT   34 (142)
Q Consensus        24 ~g~niLHvAv~   34 (142)
                      +|+|+||+|++
T Consensus         1 dG~TpLh~A~~   11 (33)
T PF00023_consen    1 DGNTPLHYAAQ   11 (33)
T ss_dssp             TSBBHHHHHHH
T ss_pred             CcccHHHHHHH
Confidence            59999999994

Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; GO: 0005515 protein binding; PDB: 1D9S_A 1NFI_F 1IKN_D 1WDY_A 1OT8_C 1QYM_A 1TR4_A 1UOH_A 1N11_A 1K1A_A ....

>cd00204 ANK ankyrin repeats; ankyrin repeats mediate protein-protein interactions in very diverse families of proteins

Probab=89.23  E-value=0.48  Score=31.45  Aligned_cols=33  Identities=27%  Similarity=0.430  Sum_probs=27.6

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      |+.++++.|++..+ .....|..|.+++|.|++.
T Consensus        51 ~~~~~~~~ll~~~~-~~~~~~~~~~~~l~~a~~~   83 (126)
T cd00204          51 GHLEIVKLLLEKGA-DVNARDKDGNTPLHLAARN   83 (126)
T ss_pred             CCHHHHHHHHHcCC-CccccCCCCCCHHHHHHHc
Confidence            67899999999886 3467789999999999953

The number of ANK repeats in a protein can range from 2 to over 20 (ankyrins, for example). ANK repeats may occur in combinations with other types of domains. The structural repeat unit contains two antiparallel helices and a beta-hairpin, repeats are stacked in a superhelical arrangement; this alignment contains 4 consecutive repeats.

>PHA02798 ankyrin-like protein; Provisional

Probab=88.74  E-value=0.37  Score=42.15  Aligned_cols=31  Identities=13%  Similarity=0.310  Sum_probs=21.7

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|+++-.| +...|..|+|+||+|+
T Consensus        87 ~~~~iv~~Ll~~Gad-iN~~d~~G~TpLh~a~  117 (489)
T PHA02798         87 HMLDIVKILIENGAD-INKKNSDGETPLYCLL  117 (489)
T ss_pred             hHHHHHHHHHHCCCC-CCCCCCCcCcHHHHHH
Confidence            456777777776555 5667777777777776

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=88.25  E-value=0.44  Score=43.96  Aligned_cols=31  Identities=26%  Similarity=0.235  Sum_probs=17.4

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++.-.+ +...|.+|+|+||+|+
T Consensus       126 g~~eiv~~LL~~Gad-vn~~d~~G~TpLh~A~  156 (664)
T PTZ00322        126 GHVQVVRVLLEFGAD-PTLLDKDGKTPLELAE  156 (664)
T ss_pred             CCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            555666666655333 2445566666666666

>PHA02989 ankyrin repeat protein; Provisional

Probab=88.18  E-value=0.47  Score=41.55  Aligned_cols=32  Identities=9%  Similarity=0.175  Sum_probs=24.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+|+.|+++--|.-...|.+|+|+||+|+
T Consensus       122 ~~~eiv~~Ll~~Gadin~~~d~~g~tpLh~a~  153 (494)
T PHA02989        122 NNCDMLRFLLSKGINVNDVKNSRGYNLLHMYL  153 (494)
T ss_pred             CcHHHHHHHHHCCCCcccccCCCCCCHHHHHH
Confidence            56788888888755544567888888888887

>PHA02798 ankyrin-like protein; Provisional

Probab=88.15  E-value=0.51  Score=41.29  Aligned_cols=29  Identities=21%  Similarity=0.249  Sum_probs=13.7

Q ss_pred             hHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            3 VIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         3 ~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +.++++.|++. . -+..+|..|+|+||+|+
T Consensus       238 ~~~i~~~l~~~-~-dvN~~d~~G~TPL~~A~  266 (489)
T PHA02798        238 KKNILDFIFSY-I-DINQVDELGFNPLYYSV  266 (489)
T ss_pred             hHHHHHHHHhc-C-CCCCcCcCCccHHHHHH
Confidence            34444444432 2 14455555555555555

>PHA03100 ankyrin repeat protein; Provisional

Probab=88.08  E-value=0.54  Score=40.30  Aligned_cols=30  Identities=23%  Similarity=0.232  Sum_probs=20.1

Q ss_pred             HHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            4 IEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      .++|+.|++.-- -+..+|.+|+|+||+|++
T Consensus       230 ~~iv~~Ll~~g~-din~~d~~g~TpL~~A~~  259 (480)
T PHA03100        230 LEVVNYLLSYGV-PINIKDVYGFTPLHYAVY  259 (480)
T ss_pred             HHHHHHHHHcCC-CCCCCCCCCCCHHHHHHH
Confidence            777777777622 245567777777777774

>PHA03095 ankyrin-like protein; Provisional

Probab=88.08  E-value=0.52  Score=40.21  Aligned_cols=30  Identities=23%  Similarity=0.215  Sum_probs=15.9

Q ss_pred             hHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            3 VIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         3 ~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +.|+++.|++.-.+ +...|.+|+|+||+|+
T Consensus        62 ~~~iv~~Ll~~Gad-in~~~~~g~TpLh~A~   91 (471)
T PHA03095         62 VKDIVRLLLEAGAD-VNAPERCGFTPLHLYL   91 (471)
T ss_pred             hHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            55555555555433 3444555555555555

>PHA02795 ankyrin-like protein; Provisional

Probab=87.62  E-value=0.57  Score=41.75  Aligned_cols=33  Identities=21%  Similarity=0.244  Sum_probs=28.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+++.|++.-.+ +...|++|+|+||+|+.
T Consensus       231 ~g~~eiVelLL~~GAd-IN~~d~~G~TpLh~Aa~  263 (437)
T PHA02795        231 AGYIDLVSWLLENGAN-VNAVMSNGYTCLDVAVD  263 (437)
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            4899999999987544 57789999999999995

>PHA02716 CPXV016; CPX019; EVM010; Provisional

Probab=86.40  E-value=0.63  Score=44.13  Aligned_cols=32  Identities=9%  Similarity=-0.020  Sum_probs=22.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+|+.|++.-.+ ++..|.+|+|+||+|++
T Consensus       190 ~~~eIVklLLe~GAD-VN~kD~~G~TPLH~Aa~  221 (764)
T PHA02716        190 VDIDILEWLCNNGVN-VNLQNNHLITPLHTYLI  221 (764)
T ss_pred             CCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            456788888776443 55677888888888873

>PTZ00322 6-phosphofructo-2-kinase/fructose-2,6-biphosphatase; Provisional

Probab=85.89  E-value=0.73  Score=42.55  Aligned_cols=32  Identities=16%  Similarity=0.042  Sum_probs=28.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.+.|+.|++...+ ++.+|.+|+|+||+|+
T Consensus        92 ~G~~~~vk~LL~~Gad-in~~d~~G~TpLh~Aa  123 (664)
T PTZ00322         92 SGDAVGARILLTGGAD-PNCRDYDGRTPLHIAC  123 (664)
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHH
Confidence            5899999999998666 4678999999999999

>PHA02989 ankyrin repeat protein; Provisional

Probab=85.80  E-value=0.75  Score=40.25  Aligned_cols=31  Identities=19%  Similarity=0.127  Sum_probs=26.5

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+|+.|+++-.| +...|.+|+|+||.|+
T Consensus        86 ~~~~iv~~Ll~~Gad-in~~d~~g~tpL~~a~  116 (494)
T PHA02989         86 KIKKIVKLLLKFGAD-INLKTFNGVSPIVCFI  116 (494)
T ss_pred             hHHHHHHHHHHCCCC-CCCCCCCCCcHHHHHH
Confidence            678999999988666 6778999999999987

>PHA02876 ankyrin repeat protein; Provisional

Probab=85.59  E-value=0.78  Score=41.76  Aligned_cols=32  Identities=16%  Similarity=0.086  Sum_probs=22.7

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++++.|++.-.+ +...|..|+|+||+|++
T Consensus       156 ~~~~i~k~Ll~~Gad-vn~~d~~G~TpLh~Aa~  187 (682)
T PHA02876        156 DELLIAEMLLEGGAD-VNAKDIYCITPIHYAAE  187 (682)
T ss_pred             CcHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHH
Confidence            667777777776544 44567778888888883

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=85.26  E-value=0.73  Score=40.77  Aligned_cols=33  Identities=27%  Similarity=0.350  Sum_probs=28.3

Q ss_pred             CChHHHHHHHHHhCccc-ceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVA-IQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~-~~~~D~~g~niLHvAv~   34 (142)
                      +||+|||+.||.. |.| +.+.|.+|-|+|.+|-+
T Consensus       383 HGhkEivklLLA~-p~cd~sLtD~DgSTAl~IAle  416 (452)
T KOG0514|consen  383 HGHKEIVKLLLAV-PSCDISLTDVDGSTALSIALE  416 (452)
T ss_pred             hChHHHHHHHhcc-CcccceeecCCCchhhhhHHh
Confidence            6999999998887 655 78889999999999983

>PHA02730 ankyrin-like protein; Provisional

Probab=84.45  E-value=0.91  Score=42.53  Aligned_cols=32  Identities=16%  Similarity=0.033  Sum_probs=26.4

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+|+.|+++=-+ +...|++|+||||+|+.
T Consensus        55 ~~~eivklLLs~GAd-in~kD~~G~TPLh~Aa~   86 (672)
T PHA02730         55 TDIKIVRLLLSRGVE-RLCRNNEGLTPLGVYSK   86 (672)
T ss_pred             CcHHHHHHHHhCCCC-CcccCCCCCChHHHHHH
Confidence            469999999987444 45789999999999984

>PHA02884 ankyrin repeat protein; Provisional

Probab=84.41  E-value=1  Score=38.01  Aligned_cols=34  Identities=15%  Similarity=0.162  Sum_probs=24.1

Q ss_pred             CChHHHHHHHHHhCccccee---ccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQE---EDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~---~D~~g~niLHvAv~   34 (142)
                      .|+.|+++.|+++-.|.=..   .|+.|+|+||+|++
T Consensus        43 ~~~~eivk~LL~~GAdiN~~~~~sd~~g~TpLh~Aa~   79 (300)
T PHA02884         43 FHYTDIIDAILKLGADPEAPFPLSENSKTNPLIYAID   79 (300)
T ss_pred             cCCHHHHHHHHHCCCCccccCcccCCCCCCHHHHHHH
Confidence            37888999998875553221   25688999999984

>TIGR00870 trp transient-receptor-potential calcium channel protein

Probab=84.39  E-value=0.59  Score=43.11  Aligned_cols=31  Identities=23%  Similarity=0.246  Sum_probs=27.3

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++ +|.-+...|+.|+|+||+|+
T Consensus       186 ~~~~iv~lLl~-~gadin~~d~~g~T~Lh~A~  216 (743)
T TIGR00870       186 GSPSIVALLSE-DPADILTADSLGNTLLHLLV  216 (743)
T ss_pred             CCHHHHHHHhc-CCcchhhHhhhhhHHHHHHH
Confidence            78899999887 47667889999999999999

after chronic exposure to capsaicin. (McCleskey and Gold, 1999).

>KOG0512 consensus Fetal globin-inducing factor (contains ankyrin repeats) [Transcription]

Probab=83.98  E-value=1.1  Score=36.30  Aligned_cols=32  Identities=13%  Similarity=0.104  Sum_probs=29.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |..+-|++||+.-|+.++.+|++|.|+||-|+
T Consensus        74 nrl~eV~~lL~e~an~vNtrD~D~YTpLHRAa  105 (228)
T KOG0512|consen   74 NRLTEVQRLLSEKANHVNTRDEDEYTPLHRAA  105 (228)
T ss_pred             ccHHHHHHHHHhccccccccccccccHHHHHH
Confidence            45678999999999999999999999999999

>KOG4177 consensus Ankyrin [Cell wall/membrane/envelope biogenesis]

Probab=83.85  E-value=0.73  Score=45.52  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=27.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      .|++++|+.||++ +--+...|+.|+|+||.|+.
T Consensus       550 ~g~v~~VkfLLe~-gAdv~ak~~~G~TPLH~Aa~  582 (1143)
T KOG4177|consen  550 YGNVDLVKFLLEH-GADVNAKDKLGYTPLHQAAQ  582 (1143)
T ss_pred             cCCchHHHHhhhC-CccccccCCCCCChhhHHHH
Confidence            4889999999988 55667777999999999993

>KOG0782 consensus Predicted diacylglycerol kinase [Signal transduction mechanisms]

Probab=83.02  E-value=0.61  Score=43.52  Aligned_cols=32  Identities=31%  Similarity=0.248  Sum_probs=30.1

Q ss_pred             ChHHHHHHHHHhCc-ccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFL-VAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P-~~~~~~D~~g~niLHvAv   33 (142)
                      |+-|||+.||++-| +++.+.|.+|.|.||-|+
T Consensus       910 g~~eivkyildh~p~elld~~de~get~lhkaa  942 (1004)
T KOG0782|consen  910 GNGEIVKYILDHGPSELLDMADETGETALHKAA  942 (1004)
T ss_pred             CChHHHHHHHhcCCHHHHHHHhhhhhHHHHHHH
Confidence            89999999999988 588999999999999999

>KOG0510 consensus Ankyrin repeat protein [General function prediction only]

Probab=83.02  E-value=1.1  Score=43.01  Aligned_cols=34  Identities=24%  Similarity=0.339  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHhCcccce--eccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQ--EEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~--~~D~~g~niLHvAv~   34 (142)
                      +||-++++.|+++--....  ++|+.|.|+||.|+.
T Consensus       351 ~gH~~v~qlLl~~GA~~~~~~e~D~dg~TaLH~Aa~  386 (929)
T KOG0510|consen  351 SGHDRVVQLLLNKGALFLNMSEADSDGNTALHLAAK  386 (929)
T ss_pred             cCHHHHHHHHHhcChhhhcccccccCCchhhhHHHH
Confidence            5899999999998776664  679999999999994

>PHA03095 ankyrin-like protein; Provisional

Probab=82.38  E-value=1.4  Score=37.57  Aligned_cols=30  Identities=13%  Similarity=0.130  Sum_probs=14.4

Q ss_pred             hHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            3 VIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         3 ~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +.++++.|+++.++.... |.+|+|+||+|+
T Consensus       166 ~~~iv~~Ll~~g~~~~~~-d~~g~t~Lh~~~  195 (471)
T PHA03095        166 NVELLRLLIDAGADVYAV-DDRFRSLLHHHL  195 (471)
T ss_pred             CHHHHHHHHHcCCCCccc-CCCCCCHHHHHH
Confidence            345555555554443333 445555555544

>PHA02917 ankyrin-like protein; Provisional

Probab=81.48  E-value=1.4  Score=40.83  Aligned_cols=32  Identities=13%  Similarity=-0.023  Sum_probs=27.3

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+|+.|++.--| +...|.+|+|+||+|++
T Consensus       207 ~~~eiv~~Li~~Gad-vn~~d~~G~TpLh~A~~  238 (661)
T PHA02917        207 VRPEVVKCLINHGIK-PSSIDKNYCTALQYYIK  238 (661)
T ss_pred             CcHHHHHHHHHCCCC-cccCCCCCCcHHHHHHH
Confidence            578999999988544 57889999999999994

>PHA02884 ankyrin repeat protein; Provisional

Probab=80.35  E-value=1.8  Score=36.51  Aligned_cols=32  Identities=0%  Similarity=-0.136  Sum_probs=21.0

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+++.|++.-.|.-...|..|+|+||+|+
T Consensus        81 ~~~eivklLL~~GADVN~~~~~~g~TpLh~Aa  112 (300)
T PHA02884         81 DNDDAAKLLIRYGADVNRYAEEAKITPLYISV  112 (300)
T ss_pred             CCHHHHHHHHHcCCCcCcccCCCCCCHHHHHH
Confidence            66777777777655443333456777777777

>KOG0514 consensus Ankyrin repeat protein [General function prediction only]

Probab=80.07  E-value=1.6  Score=38.68  Aligned_cols=34  Identities=18%  Similarity=0.373  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|++++|+.||.. -.=++..|.+|-|+|.+|.+|
T Consensus       350 HGr~d~vk~LLac-gAdVNiQDdDGSTALMCA~EH  383 (452)
T KOG0514|consen  350 HGRVDMVKALLAC-GADVNIQDDDGSTALMCAAEH  383 (452)
T ss_pred             cCcHHHHHHHHHc-cCCCccccCCccHHHhhhhhh
Confidence            6999999998864 555788899999999999976

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	142
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	96.76
3v30_A	172	DNA-binding protein rfxank; structural genomics co	96.76
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	96.66
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	96.65
1n0q_A	93	3ANK, 3 ankyrin repeats; structural protein; 1.26A	96.65
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	96.51
3aaa_C	123	Myotrophin, protein V-1; actin capping protein, ba	96.5
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	96.46
4gpm_A	169	Engineered protein OR264; de novo protein, structu	96.42
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	96.39
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	96.27
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	96.17
3hra_A	201	Ankyrin repeat family protein; structural protein;	96.15
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	96.14
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	96.14
2rfa_A	232	Transient receptor potential cation channel subfa	96.14
2dzn_A	228	Probable 26S proteasome regulatory subunit P28; an	96.09
2jab_A	136	H10-2-G3; HER2, darpin, ankyrin repeat protein, me	96.05
3hra_A	201	Ankyrin repeat family protein; structural protein;	96.04
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	95.98
3jxi_A	260	Vanilloid receptor-related osmotically activated p	95.97
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	95.93
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	95.91
1d9s_A	136	Cyclin-dependent kinase 4 inhibitor B; helix-turn-	95.89
2zgd_A	110	3 repeat synthetic ankyrin; ankyrin repeat, hydrox	95.88
2pnn_A	273	Transient receptor potential cation channel subfa	95.88
2etb_A	256	Transient receptor potential cation channel subfam	95.87
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	95.84
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	95.83
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	95.81
4gpm_A	169	Engineered protein OR264; de novo protein, structu	95.81
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	95.81
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	95.76
2rfa_A	232	Transient receptor potential cation channel subfa	95.75
4g8k_A	337	2-5A-dependent ribonuclease; ankyrin-repeat domain	95.72
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	95.72
3twr_A	165	Tankyrase-2; ankyrin repeat, protein-protein inter	95.69
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	95.69
1bd8_A	156	P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyr	95.67
1n0r_A	126	4ANK, 4 ankyrin repeats; structural protein; 1.50A	95.59
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	95.57
2l6b_A	115	NR1C; ankyrin, consensus, repeat protein, ising mo	95.56
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	95.53
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	95.49
1ihb_A	162	P18-INK4C(INK6), cyclin-dependent kinase 6 inhibit	95.48
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	95.46
3c5r_A	137	BARD-1, BRCA1-associated ring domain protein 1; an	95.44
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	95.42
1awc_B	153	Protein (GA binding protein beta 1); complex (tran	95.42
1wdy_A	285	2-5A-dependent ribonuclease; hydrolase, RNA-bindin	95.41
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	95.4
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	95.37
1ycs_B	239	53BP2, P53BP2; ankyrin repeats, SH3, tumor suppres	95.33
3v30_A	172	DNA-binding protein rfxank; structural genomics co	95.33
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	95.32
1bi7_B	156	P16INK4A, MTS1, multiple tumor suppressor; cyclin	95.25
3f6q_A	179	Integrin-linked protein kinase; ILK, integrin-link	95.22
4hbd_A	276	KN motif and ankyrin repeat domain-containing Pro;	95.16
3deo_A	183	Signal recognition particle 43 kDa protein; chloro	95.09
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	95.06
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	95.06
1k1a_A	241	B-cell lymphoma 3-encoded protein; BCL-3, NF-kappa	95.06
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	95.03
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	95.0
3ehr_A	222	Osteoclast-stimulating factor 1; beta barrel, heli	94.98
3v31_A	167	Ankyrin repeat family A protein 2; structural geno	94.97
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	94.97
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	94.93
2rfm_A	192	Putative ankyrin repeat protein TV1425; ANK repeat	94.92
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	94.89
1oy3_D	282	Transcription factor inhibitor I-kappa-B-beta; pro	94.87
2y1l_E	169	Darpin-8.4; hydrolase-inhibitor complex, DEVD darp	94.87
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	94.87
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	94.86
1s70_B	299	130 kDa myosin-binding subunit of smooth muscle my	94.82
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	94.79
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	94.67
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	94.63
3utm_A	351	Tankyrase-1; tankyrase, TNKS, ankryin repeat clust	94.62
2f8y_A	223	Notch homolog 1, translocation-associated (drosoph	94.62
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	94.57
3aji_A	231	26S proteasome non-ATPase regulatory subunit 10; g	94.53
1yyh_A	253	HN1;, notch 1, ankyrin domain; ankyrin repeats, ce	94.49
1dcq_A	278	PYK2-associated protein beta; zinc-binding module,	94.48
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	94.44
2vge_A	229	RELA-associated inhibitor; iaspp, nucleus, apoptos	94.41
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	94.32
3eu9_A	240	Huntingtin-interacting protein 14; epigenetics, an	94.31
2b0o_E	301	UPLC1; arfgap, structural genomics, structural gen	94.22
2etb_A	256	Transient receptor potential cation channel subfam	94.22
3ui2_A	244	Signal recognition particle 43 kDa protein, chlor;	94.18
2xai_A	261	ASB-9, ankyrin repeat and SOCS box protein 9; tran	94.15
4b93_B	269	Ankyrin repeat domain-containing protein 27; endoc	94.13
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	94.09
3b7b_A	237	Euchromatic histone-lysine N-methyltransferase 1;	94.08
1ikn_D	236	Protein (I-kappa-B-alpha), protein (NF-kappa-B P50	93.99
3ljn_A	364	Hypothetical protein; ankyrin, structural genomics	93.96
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	93.76
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	93.58
3jxi_A	260	Vanilloid receptor-related osmotically activated p	93.41
2pnn_A	273	Transient receptor potential cation channel subfa	93.02
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	92.8
1sw6_A	327	Regulatory protein SWI6; transcription regulation,	92.8
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	92.72
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	92.53
3t8k_A	186	Uncharacterized protein; structural genomics, PSI-	92.52
3lvq_E	497	ARF-GAP with SH3 domain, ANK repeat and PH domain	92.52
3d9h_A	285	CDNA FLJ77766, highly similar to HOMO sapiens anky	92.48
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	92.38
1n11_A	437	Ankyrin; clathrin, BAND 3, anion exchanger, struct	92.1
3kea_A	285	K1L; tropism, ANK repeat, viral protein; 2.30A {Va	91.41
2fo1_E	373	LIN-12 protein; beta-barrel, protein-DNA complex,	91.35
3jue_A	368	Arfgap with coiled-coil, ANK repeat and PH domain	89.68
2aja_A	376	Ankyrin repeat family protein; NESG, Q5ZSV0, struc	80.14

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=96.76  E-value=0.00088  Score=46.87  Aligned_cols=33  Identities=21%  Similarity=0.323  Sum_probs=27.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|+++..+ +...|.+|+|+||+|++
T Consensus        80 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  112 (162)
T 1ihb_A           80 AGFLDTLQTLLEFQAD-VNIEDNEGNLPLHLAAK  112 (162)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            3789999999998654 56789999999999994

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=96.76  E-value=0.00091  Score=47.50  Aligned_cols=34  Identities=15%  Similarity=0.155  Sum_probs=32.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..|+.+...|.+|+|+||+|++
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~   45 (172)
T 3v30_A           12 QGELDQLKEHLRKGDNLVNKPDERGFTPLIWASA   45 (172)
T ss_dssp             TTCHHHHHHHHTTCSGGGGCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCcccccCCCCCCCCHHHHHHH
Confidence            5899999999999999999999999999999994

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=96.66  E-value=0.0012  Score=44.62  Aligned_cols=33  Identities=12%  Similarity=0.072  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..++ +..+|.+|+|+||+|++
T Consensus        17 ~~~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~   49 (123)
T 3aaa_C           17 NGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAAD   49 (123)
T ss_dssp             TTCHHHHHHHHHTTCC-TTSCCTTSSCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-cCccCCCCCcHHHHHHH
Confidence            5889999999998776 57789999999999994

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=96.65  E-value=0.0013  Score=42.49  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=27.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+++.|++...+ +..+|.+|+|+||+|+
T Consensus        12 ~~~~~~v~~Ll~~g~~-~n~~d~~g~t~L~~A~   43 (93)
T 1n0q_A           12 NGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA   43 (93)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            3789999999998655 5778999999999999

>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP: k.37.1.1

Probab=96.65  E-value=0.0012  Score=42.62  Aligned_cols=33  Identities=30%  Similarity=0.422  Sum_probs=25.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+++.|++.-++ +..+|.+|+|+||+|++
T Consensus        45 ~~~~~~v~~Ll~~ga~-~~~~d~~g~t~l~~A~~   77 (93)
T 1n0q_A           45 NGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAAR   77 (93)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            0577888888887655 45678888999998884

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=96.51  E-value=0.0017  Score=47.90  Aligned_cols=35  Identities=11%  Similarity=0.117  Sum_probs=31.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|.|+.+++..|+.....|.+|+|+||+|++.
T Consensus        16 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~   50 (231)
T 3aji_A           16 SGKLDELKERILADKSLATRTDQDSRTALHWACSA   50 (231)
T ss_dssp             HTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH
T ss_pred             hCCHHHHHHHHHhchhhhhcCCCCCCCHHHHHHHc
Confidence            48899999999999999999999999999999943

>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping, inhibition, prote binding, actin capping, actin-binding, cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A 2kxp_C 2myo_A

Probab=96.50  E-value=0.0018  Score=43.79  Aligned_cols=34  Identities=26%  Similarity=0.200  Sum_probs=29.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++...+ +...|.+|+|+||+|++.
T Consensus        50 ~~~~~~v~~Ll~~g~~-~~~~d~~g~tpL~~A~~~   83 (123)
T 3aaa_C           50 CGQLEILEFLLLKGAD-INAPDKHHITPLLSAVYE   83 (123)
T ss_dssp             TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHc
Confidence            4889999999988655 677899999999999954

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=96.46  E-value=0.0021  Score=47.16  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..|+.....|.+|+|+||+|++
T Consensus        12 ~g~~~~v~~Ll~~~~~~~~~~~~~g~t~L~~A~~   45 (228)
T 2dzn_A           12 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS   45 (228)
T ss_dssp             TTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHH
T ss_pred             hCCHHHHHHHHhcCccccccCCCCCCCHHHHHHH
Confidence            4788888888888888888888888888888884

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=96.42  E-value=0.0019  Score=47.39  Aligned_cols=31  Identities=19%  Similarity=0.291  Sum_probs=18.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+|+.|+++-.+ +..+|.+|+|+||+|+
T Consensus        81 g~~~~v~~Ll~~gad-vn~~d~~G~TpLh~A~  111 (169)
T 4gpm_A           81 GHKEVVKLLISKGAD-VNAKDSDGRTPLHHAA  111 (169)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHHCcCC-CCCCCCCCCCHHHHHH
Confidence            556666666665443 3445666666666666

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=96.39  E-value=0.0027  Score=42.57  Aligned_cols=33  Identities=21%  Similarity=0.196  Sum_probs=27.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|+.
T Consensus        34 ~g~~~~v~~Ll~~g~~-i~~~d~~g~tpLh~A~~   66 (110)
T 2zgd_A           34 AGQDDEVRILMANGAD-VAAKDKNGSTPLHLAAR   66 (110)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            4889999999988554 56679999999999994

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=96.27  E-value=0.0024  Score=45.76  Aligned_cols=34  Identities=21%  Similarity=0.125  Sum_probs=31.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..|..+...|.+|+|+||+|++
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~   48 (179)
T 3f6q_A           15 EGNAVAVRLWLDNTENDLNQGDDHGFSPLHWACR   48 (179)
T ss_dssp             HTCHHHHHHHHHCTTSCTTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHhcCcccccccCCCCCCHHHHHHH
Confidence            3889999999999999999999999999999994

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=96.17  E-value=0.0038  Score=42.96  Aligned_cols=34  Identities=18%  Similarity=0.158  Sum_probs=28.8

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.|++..++ +...|.+|+|+||+|+..
T Consensus        24 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   57 (136)
T 2jab_A           24 AGQDDEVRILMANGAD-VNAKDEYGLTPLYLATAH   57 (136)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             hCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            3889999999998665 567899999999999953

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=96.15  E-value=0.0035  Score=45.11  Aligned_cols=33  Identities=21%  Similarity=0.279  Sum_probs=29.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++++.|++..+.-....|.+|+|+||+|+
T Consensus        82 ~~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  114 (201)
T 3hra_A           82 QGRTEILAYMLKHATPDLNKHNRYGGNALIPAA  114 (201)
T ss_dssp             TTCHHHHHHHHHHSCCCTTCCCTTSCCSHHHHH
T ss_pred             cCCHHHHHHHHhccCcccccccCCCCcHHHHHH
Confidence            478899999998888888888999999999998

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=96.14  E-value=0.0044  Score=43.04  Aligned_cols=33  Identities=24%  Similarity=0.177  Sum_probs=27.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|++
T Consensus        45 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   77 (156)
T 1bd8_A           45 FGSTAIALELLKQGAS-PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            4889999999988554 56788999999999994

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=96.14  E-value=0.0027  Score=47.04  Aligned_cols=32  Identities=19%  Similarity=0.266  Sum_probs=21.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++|+.|++...+ +..+|.+|+|+||+|+.
T Consensus        84 g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  115 (222)
T 3ehr_A           84 GNLSWLRECLDNRVG-VNGLDKAGSTALYWACH  115 (222)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             CcHHHHHHHHhCCCC-ccccCCCCCCHHHHHHH
Confidence            667777777775444 45566777777777773

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=96.14  E-value=0.0029  Score=46.69  Aligned_cols=33  Identities=12%  Similarity=0.171  Sum_probs=21.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++|+.|++.++.-+..+|.+|+|+||+|+
T Consensus        13 ~g~~~~v~~Ll~~~g~~~~~~~~~g~t~L~~A~   45 (232)
T 2rfa_A           13 ENDVQALSKLLKFEGCEVHQRGAMGETALHIAA   45 (232)
T ss_dssp             TTCHHHHHHHHTTTCSCTTCCCTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Confidence            366667777776655556666667777777776

>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A

Probab=96.09  E-value=0.0034  Score=45.96  Aligned_cols=32  Identities=9%  Similarity=0.000  Sum_probs=21.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++++.|+++..+ +...|.+|+|+||+|+
T Consensus       117 ~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~  148 (228)
T 2dzn_A          117 KKWFEVSQFLIENGAS-VRIKDKFNQIPLHRAA  148 (228)
T ss_dssp             TTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHH
T ss_pred             cCCHhHHHHHHHcCCC-ccccCCCCCCHHHHHH
Confidence            3667777777776333 4566777777777777

>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein, human epidermal growth factor receptor 2, de novo protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G 2v4h_C

Probab=96.05  E-value=0.0037  Score=43.00  Aligned_cols=34  Identities=29%  Similarity=0.202  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|+++
T Consensus        57 ~~~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~~~   90 (136)
T 2jab_A           57 HGHLEIVEVLLKNGAD-VNAVDAIGFTPLHLAAFI   90 (136)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHHc
Confidence            3789999999998555 567899999999999953

>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}

Probab=96.04  E-value=0.0039  Score=44.89  Aligned_cols=35  Identities=23%  Similarity=0.260  Sum_probs=30.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.+.|+.+++..+.-+...|.+|+|+||+|++.
T Consensus        15 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~~   49 (201)
T 3hra_A           15 QRDTKKVKEILQDTTYQVDEVDTEGNTPLNIAVHN   49 (201)
T ss_dssp             TTCHHHHHHHHTCTTCCTTCCCTTSCCHHHHHHHH
T ss_pred             hccHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHc
Confidence            48899999999999877888999999999999953

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=95.98  E-value=0.0039  Score=46.60  Aligned_cols=31  Identities=23%  Similarity=0.234  Sum_probs=23.9

Q ss_pred             HHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            4 IEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      .++++.|++...+ +..+|.+|+|+||+|+++
T Consensus       199 ~~i~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  229 (285)
T 1wdy_A          199 EAITHLLLDHGAD-VNVRGERGKTPLILAVEK  229 (285)
T ss_dssp             HHHHHHHHHTTCC-SSCCCTTSCCHHHHHHHT
T ss_pred             HHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            7888888887544 567788899999999943

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=95.97  E-value=0.0041  Score=46.82  Aligned_cols=33  Identities=12%  Similarity=0.213  Sum_probs=28.9

Q ss_pred             CChHHHHHHHHHh--CcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDA--FLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~--~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|++.  +..-+..+|.+|+|+||+|+
T Consensus       150 ~g~~~~v~~Ll~~~~~ga~~~~~d~~g~TpLh~A~  184 (260)
T 3jxi_A          150 TNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALV  184 (260)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHhccccCCCCcccCCCCCcHHHHHH
Confidence            5899999999995  45567789999999999999

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=95.93  E-value=0.0038  Score=49.06  Aligned_cols=32  Identities=28%  Similarity=0.547  Sum_probs=13.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++....-+..+|++|+|+||+|+
T Consensus       250 ~~~~~v~~Ll~~~~~~vn~~d~~G~TpL~~A~  281 (337)
T 4g8k_A          250 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  281 (337)
T ss_dssp             TCHHHHHHHHTSTTCCTTCBCTTSCBHHHHHH
T ss_pred             hhhHHHHHHHHhcCCcccCcCCCCCCHHHHHH
Confidence            33444444444333333444444444444444

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=95.91  E-value=0.0065  Score=41.71  Aligned_cols=31  Identities=19%  Similarity=0.246  Sum_probs=15.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++...+ +..+|.+|+|+||+|+
T Consensus        23 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   53 (136)
T 1d9s_A           23 GQVETVRQLLEAGAD-PNALNRFGRRPIQVMM   53 (136)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCTTTTTST
T ss_pred             CCHHHHHHHHHcCCC-cCCcCCCCCCHHHHHH
Confidence            455555555555322 3344555555555554

>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin repeat, signaling protein; NMR {Mus musculus} SCOP: i.11.1.1

Probab=95.89  E-value=0.0065  Score=41.74  Aligned_cols=33  Identities=18%  Similarity=-0.017  Sum_probs=28.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCC-CCchhHHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTN-GKNIVLLAYTD   35 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~-g~niLHvAv~~   35 (142)
                      |+.++++.|+++..+ +...|.+ |+|+||+|++.
T Consensus        55 ~~~~~v~~Ll~~g~~-~~~~~~~~g~t~L~~A~~~   88 (136)
T 1d9s_A           55 GSAQVAELLLLHGAE-PNCADPATLTRPVHDAARE   88 (136)
T ss_dssp             SCHHHHHHHHHHTCC-SSCCBTTTTBCHHHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCCCHHHHHHHc
Confidence            789999999998666 5678888 99999999954

>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A

Probab=95.88  E-value=0.0057  Score=40.92  Aligned_cols=20  Identities=10%  Similarity=-0.069  Sum_probs=8.5

Q ss_pred             CcccceeccCCCCchhHHHH
Q 045880           14 FLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus        14 ~P~~~~~~D~~g~niLHvAv   33 (142)
                      .|.....+|++|+|+||+|+
T Consensus        13 ~~~~~~~~~~~g~t~L~~A~   32 (110)
T 2zgd_A           13 LVPRGSHMGSDLGKKLLEAA   32 (110)
T ss_dssp             ---------CCHHHHHHHHH
T ss_pred             CCCcccccCCccchHHHHHH
Confidence            45566667777777777777

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=95.88  E-value=0.0047  Score=47.03  Aligned_cols=34  Identities=18%  Similarity=0.243  Sum_probs=29.7

Q ss_pred             CChHHHHHHHHHh--CcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDA--FLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~--~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++.  +..-+..+|.+|+|+||+|++
T Consensus       158 ~g~~~~v~~Ll~~~~~gad~~~~d~~g~tpLh~A~~  193 (273)
T 2pnn_A          158 TNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE  193 (273)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHhcccCCCCceeeCCCCCcHHHHHHH
Confidence            5889999999995  566678899999999999995

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=95.87  E-value=0.0048  Score=46.43  Aligned_cols=34  Identities=12%  Similarity=0.217  Sum_probs=29.3

Q ss_pred             CChHHHHHHHHHh--CcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDA--FLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~--~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++.  +..-+..+|.+|+|+||+|++
T Consensus       146 ~~~~~~v~~Ll~~~~~ga~~n~~d~~g~TpLh~A~~  181 (256)
T 2etb_A          146 TKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM  181 (256)
T ss_dssp             TTCHHHHHHHHHCSSCCCCTTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHhccccCCCcCccCCCCCCHHHHHHH
Confidence            4889999999995  455577899999999999995

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=95.84  E-value=0.0057  Score=45.96  Aligned_cols=35  Identities=11%  Similarity=-0.008  Sum_probs=28.8

Q ss_pred             CChHHHHHHHHHhCcc--cceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLV--AIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~--~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++..++  .+...|..|+|+||+|+..
T Consensus        19 ~g~~~~v~~Ll~~g~~~~~~~~~~~~g~t~L~~A~~~   55 (282)
T 1oy3_D           19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL   55 (282)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCCcccccccCCCCCCHHHHHHHc
Confidence            4889999999976544  5788899999999999943

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=95.83  E-value=0.0062  Score=49.24  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=32.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++..+.-+..+|.+|+|+||+|+++
T Consensus       289 ~g~~~~v~~Ll~~~~~~~n~~d~~g~TpL~~A~~~  323 (373)
T 2fo1_E          289 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  323 (373)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             hCCHHHHHHHHHhcCCCccCcCCCCCCHHHHHHHc
Confidence            58999999999998888899999999999999954

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=95.81  E-value=0.0038  Score=41.47  Aligned_cols=33  Identities=24%  Similarity=0.248  Sum_probs=28.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++..++ +...|.+|+|+||+|+.
T Consensus        19 ~~~~~~~~~Ll~~g~~-~~~~d~~g~t~L~~A~~   51 (115)
T 2l6b_A           19 NGHAEEVKKLLSKGAD-VNARSKDGNTPLHLAAK   51 (115)
T ss_dssp             HTCHHHHHHHTTTTCC-SSCCCSSSCCTTHHHHT
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            3789999999998766 66789999999999993

>4gpm_A Engineered protein OR264; de novo protein, structural genomics, PSI-biology, northeast structural genomics consortium, NESG; 2.00A {Synthetic construct} PDB: 4gmr_A

Probab=95.81  E-value=0.0058  Score=44.77  Aligned_cols=33  Identities=15%  Similarity=0.223  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++-.| +..+|.+|+|+||+|+.
T Consensus        14 ~G~~~~v~~Ll~~Gad-vn~~d~~g~t~l~~a~~   46 (169)
T 4gpm_A           14 NGNKDRVKDLIENGAD-VNASDSDGRTPLHHAAE   46 (169)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            5999999999998655 46789999999999994

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=95.81  E-value=0.0066  Score=44.37  Aligned_cols=32  Identities=16%  Similarity=0.173  Sum_probs=19.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|++..++ ....|.+|+|+||+|+
T Consensus        35 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   66 (223)
T 2f8y_A           35 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAV   66 (223)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            3666777777666433 3445666777777776

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=95.76  E-value=0.0069  Score=42.59  Aligned_cols=33  Identities=18%  Similarity=0.208  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..++ +...|.+|+|+||+|++
T Consensus        13 ~g~~~~v~~ll~~~~~-~~~~~~~g~t~L~~A~~   45 (167)
T 3v31_A           13 QGEMLYLATRIEQENV-INHTDEEGFTPLMWAAA   45 (167)
T ss_dssp             TTCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-cCCCCCCCCCHHHHHHH
Confidence            5889999999998644 78889999999999994

>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}

Probab=95.75  E-value=0.0081  Score=44.28  Aligned_cols=34  Identities=15%  Similarity=0.157  Sum_probs=29.8

Q ss_pred             CChHHHHHHHHHhCcccc----eeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAI----QEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~----~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++..++..    ...|.+|+|+||+|++
T Consensus        47 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~~g~t~L~~A~~   84 (232)
T 2rfa_A           47 YDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVI   84 (232)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCCCCSTTTTTCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCchhccccccccCCCCcCHHHHHHH
Confidence            589999999999998864    5578899999999994

>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*

Probab=95.72  E-value=0.007  Score=47.50  Aligned_cols=33  Identities=12%  Similarity=0.118  Sum_probs=26.6

Q ss_pred             CChHHHHHHHHHhCcccceecc-CCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEED-TNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D-~~g~niLHvAv~   34 (142)
                      +|++|+|+.||++-.|. ..+| ..|+|+||+|++
T Consensus        35 ~g~~~~V~~LL~~Gadv-n~~~~~~g~TpLh~A~~   68 (337)
T 4g8k_A           35 NEDVDLVQQLLEGGANV-NFQEEEGGWTPLHNAVQ   68 (337)
T ss_dssp             TTCHHHHHHHHHHTCCT-TCCCTTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCC-CccCCCCCcCHHHHHHH
Confidence            59999999999986654 3344 469999999994

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=95.72  E-value=0.0042  Score=43.67  Aligned_cols=34  Identities=18%  Similarity=0.169  Sum_probs=30.8

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..|......|.+|+|+||+|++
T Consensus        18 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~A~~   51 (165)
T 3twr_A           18 AGDVETVKKLCTVQSVNCRDIEGRQSTPLHFAAG   51 (165)
T ss_dssp             HTCHHHHHHHCCTTTTTCCCTTTTCCCHHHHHHH
T ss_pred             hCCHHHHHHHHHcCCCCccccccCCCCHHHHHHH
Confidence            3889999999999898889999999999999994

>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*

Probab=95.69  E-value=0.0072  Score=42.41  Aligned_cols=33  Identities=18%  Similarity=0.182  Sum_probs=28.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++..++ +..+|.+|+|+||+|++
T Consensus        52 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   84 (165)
T 3twr_A           52 YNRVSVVEYLLQHGAD-VHAKDKGGLVPLHNACS   84 (165)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cChHHHHHHHHhcCCC-CCccCCCCCCHHHHHHH
Confidence            4889999999998655 56788999999999994

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=95.69  E-value=0.0091  Score=39.32  Aligned_cols=34  Identities=29%  Similarity=0.432  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.|++..++ +..+|..|+|+||+|+++
T Consensus        12 ~~~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~~   45 (126)
T 1n0r_A           12 NGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAARN   45 (126)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHHc
Confidence            3789999999998665 566799999999999954

>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B

Probab=95.67  E-value=0.0076  Score=41.80  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=28.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++++.|++..+.-....|.+|+|+||+|.
T Consensus        12 ~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~~~~   44 (156)
T 1bd8_A           12 RGDVQEVRRLLHRELVHPDALNRFGKTALQVMM   44 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC
T ss_pred             hCCHHHHHHHHHhhCcCccccCCCCCcHHHHHH
Confidence            488999999999976678889999999999943

>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP: k.37.1.1

Probab=95.59  E-value=0.009  Score=39.35  Aligned_cols=32  Identities=31%  Similarity=0.438  Sum_probs=27.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++++.|++..++ +..+|.+|+|+||+|+
T Consensus        45 ~~~~~~~~~Ll~~g~~-~~~~~~~g~t~l~~A~   76 (126)
T 1n0r_A           45 NGHLEVVKLLLEAGAD-VNAKDKNGRTPLHLAA   76 (126)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cCcHHHHHHHHHcCCC-CcccCCCCCcHHHHHH
Confidence            3789999999997554 5678899999999999

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=95.57  E-value=0.0064  Score=43.95  Aligned_cols=33  Identities=15%  Similarity=0.216  Sum_probs=25.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.|++  ..-+..+|.+|+|+||+|+.+
T Consensus        54 ~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~~   86 (183)
T 3deo_A           54 KADEQALSQLLE--DRDVDAVDENGRTALLFVAGL   86 (183)
T ss_dssp             TTCHHHHHHHTT--TSCTTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHh--cCCCCCcCCCCCCHHHHHHHc
Confidence            478888888888  445667888889999988843

>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR {Escherichia coli}

Probab=95.56  E-value=0.0057  Score=40.60  Aligned_cols=33  Identities=24%  Similarity=0.218  Sum_probs=28.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|++
T Consensus        52 ~~~~~~~~~Ll~~g~~-~~~~d~~g~tpl~~A~~   84 (115)
T 2l6b_A           52 NGHAEIVKLLLAKGAD-VNARSKDGNTPEHLAKK   84 (115)
T ss_dssp             TTCHHHHHHHTTTTCC-TTCCCTTCCCTTHHHHT
T ss_pred             cCcHHHHHHHHHcCCC-CcccCCCCCCHHHHHHH
Confidence            4889999999998665 56789999999999994

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=95.53  E-value=0.0093  Score=46.28  Aligned_cols=31  Identities=19%  Similarity=0.190  Sum_probs=16.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++.. +.....|.+|+|+||+|+
T Consensus       161 ~~~~~v~~Ll~~g-~~~~~~~~~g~tpLh~A~  191 (276)
T 4hbd_A          161 DDIETVLQLFRLG-NINAKASQAGQTALMLAV  191 (276)
T ss_dssp             HHHHHHHHHHHHS-CTTCCCTTTCCCHHHHHH
T ss_pred             hhHHHHHHHHHcC-CCccccCCCCCCHHHHHH
Confidence            4455555555553 333445555666666666

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=95.49  E-value=0.0076  Score=41.22  Aligned_cols=33  Identities=24%  Similarity=0.084  Sum_probs=26.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|++
T Consensus        20 ~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~   52 (137)
T 3c5r_A           20 KGDIPSVEYLLQNGSD-PNVKDHAGWTPLHEACN   52 (137)
T ss_dssp             HTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCcCCCCCCCHHHHHHH
Confidence            3788999999987554 46788999999999994

>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A 1mx2_A 1mx6_A

Probab=95.48  E-value=0.0071  Score=42.09  Aligned_cols=31  Identities=23%  Similarity=0.125  Sum_probs=27.0

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++...+ ...+|.+|+|+||+|+
T Consensus        48 ~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   78 (162)
T 1ihb_A           48 GNPEIARRLLLRGAN-PDLKDRTGFAVIHDAA   78 (162)
T ss_dssp             SCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence            789999999998554 4567999999999999

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=95.46  E-value=0.0098  Score=41.40  Aligned_cols=33  Identities=18%  Similarity=0.009  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++..++.-  .|.+|+|+||+|+++
T Consensus        12 ~g~~~~v~~Ll~~g~~~~--~~~~g~t~L~~A~~~   44 (153)
T 1awc_B           12 AGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQY   44 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCC--cCCCCCCHHHHHHHc
Confidence            388999999999987653  688999999999953

>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat, helix, extended loop, four repeat, PR ANK repeat, disease mutation, metal-binding; 2.00A {Homo sapiens} SCOP: k.37.1.1

Probab=95.44  E-value=0.0074  Score=41.28  Aligned_cols=33  Identities=15%  Similarity=0.148  Sum_probs=28.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++... -+...|.+|+|+||+|++
T Consensus        53 ~~~~~~~~~Ll~~g~-~~~~~~~~g~t~L~~A~~   85 (137)
T 3c5r_A           53 HGHLKVVELLLQHKA-LVNTTGYQNDSPLHDAAK   85 (137)
T ss_dssp             TTCHHHHHHHHHTTC-CTTCCCGGGCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCC-cccCcCCCCCCHHHHHHH
Confidence            488999999998744 467789999999999994

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=95.42  E-value=0.0076  Score=45.50  Aligned_cols=31  Identities=16%  Similarity=0.174  Sum_probs=17.0

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++..++ +..+|.+|+|+||+|+
T Consensus        48 g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~   78 (239)
T 1ycs_B           48 GEFDLVQRIIYEVDD-PSLPNDEGITALHNAV   78 (239)
T ss_dssp             TCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            555566665555442 3444555666666665

>1awc_B Protein (GA binding protein beta 1); complex (transcription regulation/DNA), DNA-binding, nuclear protein, ETS domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus musculus} SCOP: d.211.1.1

Probab=95.42  E-value=0.01  Score=41.35  Aligned_cols=34  Identities=15%  Similarity=0.159  Sum_probs=28.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.|++..++ +...|.+|+|+||+|++.
T Consensus        44 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   77 (153)
T 1awc_B           44 YGHFSTTEVLLRAGVS-RDARTKVDRTPLHMAASE   77 (153)
T ss_dssp             HTCHHHHHHHHTTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHHc
Confidence            3789999999987655 467899999999999954

>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1

Probab=95.41  E-value=0.011  Score=44.14  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=24.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++..++.-...|..|+|+||+|++
T Consensus        15 ~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~   48 (285)
T 1wdy_A           15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ   48 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHH
Confidence            4677777777777777655557777777777773

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=95.40  E-value=0.011  Score=41.39  Aligned_cols=31  Identities=19%  Similarity=-0.045  Sum_probs=17.3

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCc-hhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKN-IVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~n-iLHvAv   33 (142)
                      |+.++|+.|++...+ +..+|.+|+| +||+|+
T Consensus        55 ~~~~~v~~Ll~~g~~-~~~~d~~g~ttpL~~A~   86 (156)
T 1bi7_B           55 GSARVAELLLLHGAE-PNCADPATLTRPVHDAA   86 (156)
T ss_dssp             TCHHHHHHHHTTTCC-CCCCCTTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CCCcCCCCCcHHHHHHH
Confidence            555666666655322 3445566665 666666

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=95.37  E-value=0.012  Score=43.32  Aligned_cols=34  Identities=12%  Similarity=0.065  Sum_probs=26.7

Q ss_pred             CChHHHHHHHHHh---CcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDA---FLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~---~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++.   .+.-+...|.+|+|+||+|+.
T Consensus        19 ~g~~~~v~~Ll~~~~~~~~~~~~~~~~g~t~L~~A~~   55 (241)
T 1k1a_A           19 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI   55 (241)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHhcCCCCCcccccCCCHHHHHHH
Confidence            4788888888874   555677788888899998884

>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene family, nuclear protein, phosphorylation, disease mutation, polymorphism; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.211.1.1 PDB: 4a63_B

Probab=95.33  E-value=0.0064  Score=45.91  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=28.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++..+ +..+|.+|+|+||+|+.
T Consensus        80 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpL~~A~~  112 (239)
T 1ycs_B           80 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAAS  112 (239)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHHH
Confidence            3889999999998555 57789999999999994

>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC, rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens} PDB: 3uxg_A

Probab=95.33  E-value=0.01  Score=41.94  Aligned_cols=32  Identities=22%  Similarity=0.093  Sum_probs=24.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|+++..+ +...|.+|+|+||+|+
T Consensus        46 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   77 (172)
T 3v30_A           46 FGEIETVRFLLEWGAD-PHILAKERESALSLAS   77 (172)
T ss_dssp             TTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-chhhcccCCCHHHHHH
Confidence            4778888888877544 4566788888888888

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=95.32  E-value=0.014  Score=42.06  Aligned_cols=32  Identities=19%  Similarity=0.501  Sum_probs=22.6

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++|+.|++..++ +...|.+|+|+||+|++
T Consensus        46 g~~~~v~~Ll~~~~~-~~~~~~~g~t~L~~A~~   77 (192)
T 2rfm_A           46 GMENAIDKLVENFDK-LEDKDIEGSTALIWAVK   77 (192)
T ss_dssp             TCGGGHHHHHHHHCC-TTCCCTTSCCHHHHHHH
T ss_pred             CCHHHHHHHHHhccc-cccccccCccHHHHHHH
Confidence            667777777777543 45567778888888873

>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase, cyclin dependent kinase inhibitory protein, CDK, cell cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A 1dc2_A 2a5e_A

Probab=95.25  E-value=0.015  Score=40.71  Aligned_cols=34  Identities=21%  Similarity=0.091  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|+++..+ +..+|.+|+|+||+|+++
T Consensus        88 ~~~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~~  121 (156)
T 1bi7_B           88 EGFLDTLVVLHRAGAR-LDVRDAWGRLPVDLAEEL  121 (156)
T ss_dssp             HTCHHHHHHHHHHTCC-SSCCCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-CcccCCCCCCHHHHHHHh
Confidence            3789999999998544 567899999999999953

>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch, ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB: 3ixe_A 2kbx_A

Probab=95.22  E-value=0.013  Score=41.85  Aligned_cols=32  Identities=19%  Similarity=0.095  Sum_probs=23.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++|+.|++...+ +..+|.+|+|+||+|+
T Consensus        49 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   80 (179)
T 3f6q_A           49 EGRSAVVEMLIMRGAR-INVMNRGDDTPLHLAA   80 (179)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHH
T ss_pred             cCcHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            4677888888877444 4556777888888887

>4hbd_A KN motif and ankyrin repeat domain-containing Pro; structural genomics consortium, SGC, protein binding; 1.72A {Homo sapiens}

Probab=95.16  E-value=0.012  Score=45.74  Aligned_cols=34  Identities=18%  Similarity=0.370  Sum_probs=29.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.|++...+ +..+|.+|+|+||+|+++
T Consensus       193 ~g~~~~v~~Ll~~gad-~n~~d~~G~TpLh~A~~~  226 (276)
T 4hbd_A          193 HGRVDVVKALLACEAD-VNVQDDDGSTALMCACEH  226 (276)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHHHC
Confidence            5899999999998655 567899999999999954

>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system, signal sequence, ankyrin repeat, chromodomain, type I turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2 k.37.1.1 PDB: 3dep_A 1x32_A

Probab=95.09  E-value=0.015  Score=41.97  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=27.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++.++.-...|.+|+|+||+|+.
T Consensus        86 ~~~~~~v~~Ll~~ga~~~~~~~~~g~tpL~~A~~  119 (183)
T 3deo_A           86 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  119 (183)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHh
Confidence            3789999999998777544444899999999994

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=95.06  E-value=0.013  Score=46.43  Aligned_cols=32  Identities=13%  Similarity=0.185  Sum_probs=19.1

Q ss_pred             ChHHHHHHHHHhCccc----ceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVA----IQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~----~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++..++.    +...|.+|+|+||+|+
T Consensus       184 g~~~~v~~Ll~~g~~~~~~~~~~~~~~g~t~L~~A~  219 (364)
T 3ljn_A          184 RNREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAI  219 (364)
T ss_dssp             TCHHHHHHHHHHCSCSSSCCTTCCCTTCCCTTHHHH
T ss_pred             CCHHHHHHHHhcccccccccccccCCCCCcHHHHHH
Confidence            5566666666655543    4555666666666666

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=95.06  E-value=0.0068  Score=46.76  Aligned_cols=32  Identities=22%  Similarity=0.179  Sum_probs=16.1

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.+.|+.++..++.-+...|.+|+|+||+|+
T Consensus        35 g~~~~v~~ll~~~~~~~~~~d~~g~t~L~~A~   66 (351)
T 3utm_A           35 GNEEKLMALLTPLNVNCHASDGRKSTPLHLAA   66 (351)
T ss_dssp             TCHHHHHHHCCTTTTTCCCSSTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHhcCCCcccCCCCCCCHHHHHH
Confidence            44455555555444444445555555555555

>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A

Probab=95.06  E-value=0.018  Score=42.21  Aligned_cols=33  Identities=15%  Similarity=0.079  Sum_probs=24.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++++.|++..++.-...+.+|+|+||+|++
T Consensus       127 ~~~~~~~~Ll~~g~~~~~~~~~~g~t~L~~A~~  159 (241)
T 1k1a_A          127 ECQETVQLLLERGADIDAVDIKSGRSPLIHAVE  159 (241)
T ss_dssp             TCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             CCHHHHHHHHHcCCCcccccccCCCcHHHHHHH
Confidence            678888888888776554444788888888884

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=95.00  E-value=0.021  Score=41.58  Aligned_cols=31  Identities=16%  Similarity=0.284  Sum_probs=18.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+++.|++...+ +...|.+|+|+||+|+
T Consensus        20 g~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~   50 (240)
T 3eu9_A           20 GIYERCRELVEAGYD-VRQPDKENVTLLHWAA   50 (240)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CChHHHHHHHHcCCC-cCCCCCCCCCHHHHHH
Confidence            566666666665443 3445566666666666

>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix, SH3, ankyrin repeat, signaling protein, ANK repeat, cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB: 3ehq_A

Probab=94.98  E-value=0.015  Score=42.92  Aligned_cols=35  Identities=17%  Similarity=0.203  Sum_probs=30.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++.+..-+...|.+|+|+||+|++.
T Consensus       116 ~~~~~~v~~Ll~~~g~~~~~~d~~g~tpL~~A~~~  150 (222)
T 3ehr_A          116 GGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWK  150 (222)
T ss_dssp             TTCHHHHHHHTTSTTCCCCCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHcCCCCCccccCCCCCCHHHHHHHc
Confidence            06789999999987777888999999999999954

>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium, SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo sapiens} PDB: 3v2x_A 3v2o_A 3so8_A

Probab=94.97  E-value=0.02  Score=40.17  Aligned_cols=33  Identities=33%  Similarity=0.395  Sum_probs=28.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|+.
T Consensus        79 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  111 (167)
T 3v31_A           79 KGYTDIVKMLLDCGVD-VNEYDWNGGTPLLYAVH  111 (167)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCcCCCCCCCHHHHHHH
Confidence            3789999999998655 45779999999999994

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=94.97  E-value=0.017  Score=45.33  Aligned_cols=32  Identities=9%  Similarity=0.158  Sum_probs=28.1

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++|+.|+++-.+ +...|.+|+|+||+|+.
T Consensus       183 ~~~~~v~~Ll~~ga~-in~~d~~g~TpLh~A~~  214 (278)
T 1dcq_A          183 TSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCL  214 (278)
T ss_dssp             TTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHH
T ss_pred             chHHHHHHHHHCCCC-ccccCCCCCCHHHHHHH
Confidence            889999999998555 66789999999999994

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=94.93  E-value=0.015  Score=42.86  Aligned_cols=32  Identities=22%  Similarity=0.292  Sum_probs=15.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++..|.-....|..|+|+||+|+
T Consensus        88 ~~~~~~~~Ll~~~~~~~~~~~~~g~t~L~~A~  119 (237)
T 3b7b_A           88 GHYEVVQYLLSNGQMDVNCQDDGGWTPMIWAT  119 (237)
T ss_dssp             TCHHHHHHHHTTTCCCTTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHhCCCCCcccCCCCCCCHHHHHH
Confidence            44444444444444444444444444444444

>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}

Probab=94.92  E-value=0.02  Score=41.16  Aligned_cols=34  Identities=21%  Similarity=0.215  Sum_probs=28.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.|++..++ +...|.+|+|+||+|+..
T Consensus        78 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  111 (192)
T 2rfm_A           78 NNRLGIAEKLLSKGSN-VNTKDFSGKTPLMWSIIF  111 (192)
T ss_dssp             TTCHHHHHHHHHHTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHc
Confidence            4889999999998665 466788999999999943

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=94.89  E-value=0.018  Score=40.75  Aligned_cols=32  Identities=31%  Similarity=0.300  Sum_probs=26.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++|+.|++...+ +...|.+|+|+||+|+
T Consensus        57 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   88 (169)
T 2y1l_E           57 NGHLEIVEVLLKNGAD-VNAVDHAGMTPLRLAA   88 (169)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCCHHHHHH
Confidence            4889999999987544 5667889999999999

>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein complex, transcription factors, nuclear localization, DNA binding protein; 2.05A {Mus musculus} SCOP: d.211.1.1 PDB: 1k3z_D

Probab=94.87  E-value=0.02  Score=42.92  Aligned_cols=34  Identities=26%  Similarity=0.130  Sum_probs=26.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++.++.-...+..|+|+||+|++
T Consensus       168 ~g~~~~v~~Ll~~g~~~~~~~~~~g~tpL~~A~~  201 (282)
T 1oy3_D          168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE  201 (282)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHH
Confidence            4788999999998777554444569999999994

>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin repeat Pro ribosome display, apoptosis; 1.80A {Synthetic source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D* 3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B* 2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*

Probab=94.87  E-value=0.018  Score=40.83  Aligned_cols=33  Identities=21%  Similarity=0.144  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++..++ +...|.+|+|+||+|++
T Consensus        24 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   56 (169)
T 2y1l_E           24 AGRDDEVRILMANGAD-VNAEDASGWTPLHLAAF   56 (169)
T ss_dssp             HTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            4899999999998665 46789999999999994

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=94.87  E-value=0.02  Score=43.67  Aligned_cols=31  Identities=23%  Similarity=0.192  Sum_probs=17.0

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++..++ +...|.+|+|+||+|+
T Consensus        51 g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   81 (299)
T 1s70_B           51 GDTEEVLRLLERGAD-INYANVDGLTALHQAC   81 (299)
T ss_dssp             TCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHH
T ss_pred             CCHHHHHHHHHcCCC-CcccCCCCCCHHHHHH
Confidence            555566665555443 3345555556666555

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=94.86  E-value=0.019  Score=43.39  Aligned_cols=33  Identities=15%  Similarity=0.183  Sum_probs=24.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++..+ +...|.+|+|+||+|+.
T Consensus        67 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~   99 (253)
T 1yyh_A           67 YSRSDAAKRLLEASAD-ANIQDNMGRTPLHAAVS   99 (253)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            4778888888887544 35567888888888884

>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase (M130), serine/threonine protein phosphatase PP1-beta (OR delta) catalytic subunit; myosin phosphatase; HET: PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1

Probab=94.82  E-value=0.02  Score=43.67  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=28.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++...+ +...|.+|+|+||+|+..
T Consensus        83 ~g~~~~v~~Ll~~ga~-~~~~~~~g~tpL~~A~~~  116 (299)
T 1s70_B           83 DDNVDMVKFLVENGAN-INQPDNEGWIPLHAAASC  116 (299)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCcHHHHHHHc
Confidence            0789999999997544 567899999999999954

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=94.79  E-value=0.02  Score=44.36  Aligned_cols=33  Identities=6%  Similarity=-0.058  Sum_probs=24.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++...+ +..+|.+|+|+||+|++
T Consensus        69 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  101 (285)
T 3d9h_A           69 HGHQLSLRNLISQGWA-VNIITADHVSPLHEACL  101 (285)
T ss_dssp             TTCHHHHHHHHHTTCC-SCEECTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHHH
Confidence            4778888888887554 56678888888888883

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=94.67  E-value=0.014  Score=44.41  Aligned_cols=32  Identities=16%  Similarity=0.264  Sum_probs=20.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|++  ..-+..+|.+|+|+||+|+.
T Consensus        55 ~g~~~~v~~Ll~--~~~~~~~d~~g~t~L~~A~~   86 (244)
T 3ui2_A           55 KADEQALSQLLE--DRDVDAVDENGRTALLFVAG   86 (244)
T ss_dssp             TTCHHHHHHTTT--TCCTTCBCTTSCBHHHHHHH
T ss_pred             cCCHHHHHHHHc--CCCCCCcCCCCCCHHHHHHH
Confidence            366777777776  33355667777777777773

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=94.63  E-value=0.023  Score=45.13  Aligned_cols=32  Identities=13%  Similarity=0.174  Sum_probs=28.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++|+.|++.-.+ +..+|.+|+|+||+|+.
T Consensus       204 ~~~~iv~~Ll~~gad-vn~~d~~G~TpLh~A~~  235 (301)
T 2b0o_E          204 ASLPLVDFIIQNGGH-LDAKAADGNTALHYAAL  235 (301)
T ss_dssp             TTHHHHHHHHHHSSC-TTCCCTTCCCHHHHHHH
T ss_pred             CcHHHHHHHHhcCCC-CCCCCCCCCCHHHHHHH
Confidence            889999999999655 56789999999999994

>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT signaling, POL ribosylation, transferase-signaling protein complex; 2.00A {Mus musculus}

Probab=94.62  E-value=0.022  Score=43.88  Aligned_cols=33  Identities=18%  Similarity=0.174  Sum_probs=22.8

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++..+ +...|.+|+|+||+|++
T Consensus        68 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~  100 (351)
T 3utm_A           68 YNRVRIVQLLLQHGAD-VHAKDKGGLVPLHNACS  100 (351)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCccCCCCCcHHHHHHH
Confidence            4677777777776544 45567777777777773

>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A 1ymp_A

Probab=94.62  E-value=0.026  Score=41.14  Aligned_cols=32  Identities=19%  Similarity=0.283  Sum_probs=25.7

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++++.|++..++ +...|.+|+|+||+|++
T Consensus       103 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~  134 (223)
T 2f8y_A          103 AVEGMLEDLINSHAD-VNAVDDLGKSALHWAAA  134 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCBCTTSCBHHHHHHH
T ss_pred             CcHHHHHHHHHcCCC-CcCcCCCCCcHHHHHHH
Confidence            778899998887555 56678889999999984

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=94.57  E-value=0.023  Score=43.06  Aligned_cols=31  Identities=16%  Similarity=0.245  Sum_probs=21.4

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|++..++ +...|.+|+|+||+|+
T Consensus        32 g~~~~v~~Ll~~g~~-~~~~d~~g~tpLh~A~   62 (229)
T 2vge_A           32 GELEVVQQAVKEMND-PSQPNEEGITALHNAI   62 (229)
T ss_dssp             TCHHHHHHHHHHSSC-TTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHhcCCC-CCCCCCCCCCHHHHHH
Confidence            677777777776554 3456777777777777

>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A

Probab=94.53  E-value=0.028  Score=41.15  Aligned_cols=34  Identities=26%  Similarity=0.330  Sum_probs=26.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.|++...+ +...|.+|+|+||+|++.
T Consensus        50 ~g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~~~   83 (231)
T 3aji_A           50 AGHTEIVEFLLQLGVP-VNDKDDAGWSPLHIAASA   83 (231)
T ss_dssp             HTCHHHHHHHHHTTCC-SCCCCTTSCCHHHHHHHH
T ss_pred             cCcHHHHHHHHHhCCC-CCCcCCCCCCHHHHHHHc
Confidence            3788999999987544 566788899999999943

>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A 2f8x_K 3nbn_B 3v79_K* 1ot8_A

Probab=94.49  E-value=0.012  Score=44.42  Aligned_cols=33  Identities=12%  Similarity=0.135  Sum_probs=14.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++|+.|++..++.....|.+|+|+||+|++
T Consensus        34 ~~~~~v~~Ll~~g~~~~~~~d~~g~t~L~~A~~   66 (253)
T 1yyh_A           34 DAPAVISDFIYQGASLHNQTDRTGETALHLAAR   66 (253)
T ss_dssp             ------------------CCCTTSCCHHHHHHH
T ss_pred             CChHHHHHHHHccCCcccccCCCCCcHHHHHHH
Confidence            389999999999999988899999999999994

>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats, metal binding protein; 2.10A {Mus musculus} SCOP: d.211.1.1 g.45.1.1

Probab=94.48  E-value=0.024  Score=44.51  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=28.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++-.+ +..+|.+|+|+||+|++
T Consensus       215 ~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~  247 (278)
T 1dcq_A          215 TDNAECLKLLLRGKAS-IEIANESGETPLDIAKR  247 (278)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCccCCCCCHHHHHHH
Confidence            5899999999997554 67789999999999994

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=94.44  E-value=0.01  Score=46.22  Aligned_cols=32  Identities=22%  Similarity=0.210  Sum_probs=27.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++|+.|+++-.+ +...|.+|+|+||+|+
T Consensus       162 ~g~~~~v~~Ll~~gad-vn~~~~~g~t~Lh~A~  193 (269)
T 4b93_B          162 GGHHELVALLLQHGAS-INASNNKGNTALHEAV  193 (269)
T ss_dssp             TTCGGGHHHHHHTTCC-TTCBCTTSCBHHHHHH
T ss_pred             CCCHHHHHHHHHCCCC-CCccccCCCcHHHHHH
Confidence            5889999999988655 5678999999999999

>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor, cytoplasm, phosphorylation, P53 binding protein, ANK repeat, SH3 domain; 2.10A {Homo sapiens}

Probab=94.41  E-value=0.026  Score=42.77  Aligned_cols=33  Identities=18%  Similarity=0.128  Sum_probs=27.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++.-.+ +...|.+|+|+||+|+.
T Consensus        64 ~g~~~~v~~Ll~~ga~-~n~~d~~g~tpLh~A~~   96 (229)
T 2vge_A           64 GANYSIVDFLITAGAN-VNSPDSHGWTPLHCAAS   96 (229)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHH
Confidence            0688999999998544 56789999999999995

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=94.32  E-value=0.03  Score=44.44  Aligned_cols=33  Identities=15%  Similarity=0.164  Sum_probs=24.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++-.+ +..+|.+|+|+||+|++
T Consensus       141 ~g~~~~v~~Ll~~Gad-~n~~d~~g~TpLh~A~~  173 (327)
T 1sw6_A          141 IANLELVKHLVKHGSN-RLYGDNMGESCLVKAVK  173 (327)
T ss_dssp             TTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            4778888888887544 35678888888888884

>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}

Probab=94.31  E-value=0.029  Score=40.72  Aligned_cols=35  Identities=11%  Similarity=-0.013  Sum_probs=31.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++..++.....+..|+|+||+|++.
T Consensus        52 ~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~   86 (240)
T 3eu9_A           52 NNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQ   86 (240)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHH
T ss_pred             hCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHc
Confidence            48999999999999999888888999999999954

>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium, SGC, metal binding protein; 2.06A {Homo sapiens}

Probab=94.22  E-value=0.034  Score=44.19  Aligned_cols=34  Identities=9%  Similarity=0.149  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|+++-.+ +..+|.+|+|+||+|+++
T Consensus       236 ~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~~~  269 (301)
T 2b0o_E          236 YNQPDCLKLLLKGRAL-VGTVNEAGETALDIARKK  269 (301)
T ss_dssp             TTCHHHHHHHHHTTCC-CSCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHHc
Confidence            4899999999998555 567899999999999953

>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A

Probab=94.22  E-value=0.021  Score=42.85  Aligned_cols=29  Identities=14%  Similarity=0.088  Sum_probs=25.4

Q ss_pred             HHHHHHHhCcccc------eeccCCCCchhHHHHH
Q 045880            6 IVEKILDAFLVAI------QEEDTNGKNIVLLAYT   34 (142)
Q Consensus         6 iV~~ll~~~P~~~------~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+++..+.-      ..+|.+|+|+||+|++
T Consensus       196 iv~~Ll~~ga~~~~~~~~~~~~d~~g~tpL~~A~~  230 (256)
T 2etb_A          196 MYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAK  230 (256)
T ss_dssp             HHHHHHHHHHHHSTTCCGGGCCCTTSCCHHHHHHH
T ss_pred             HHHHHHHcCCCcccccccccccCCCCCCHHHHHHH
Confidence            9999999876653      7899999999999995

>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat, chromodomain, aromatic CAGE, signal recognit particle, protein targeting; 3.18A {Arabidopsis thaliana} PDB: 1x3q_A 2hug_A

Probab=94.18  E-value=0.032  Score=42.38  Aligned_cols=34  Identities=15%  Similarity=0.064  Sum_probs=27.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++..+.-...|.+|+|+||+|++
T Consensus        87 ~g~~~~v~~Ll~~ga~~~~~~~~~g~t~L~~A~~  120 (244)
T 3ui2_A           87 LGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAG  120 (244)
T ss_dssp             HTCHHHHHHHHHTTCCTTCCCSSSCCCHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCCCcCCCCCCCCHHHHHHH
Confidence            3889999999998777544445889999999994

>4b93_B Ankyrin repeat domain-containing protein 27; endocytosis, exocytosis, snare; 2.00A {Homo sapiens}

Probab=94.13  E-value=0.02  Score=44.50  Aligned_cols=31  Identities=23%  Similarity=0.382  Sum_probs=26.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|+++..+ +..+|.+|+|+||+|+
T Consensus       130 ~~~~~~~~Ll~~g~~-~n~~d~~g~TpL~~A~  160 (269)
T 4b93_B          130 GHFQVVKCLLDSNAK-PNKKDLSGNTPLIYAC  160 (269)
T ss_dssp             TCHHHHHHHHHTTCC-SCCCCTTCCCHHHHHH
T ss_pred             ChHHHHHHHHHCCCC-CCCCCCCCCCHHHHHH
Confidence            778999999998655 4678999999999999

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=94.09  E-value=0.039  Score=40.81  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=23.0

Q ss_pred             ChHHHHHHHHHhCc-----ccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFL-----VAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P-----~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++..+     ..+...|.+|+|+||+|+
T Consensus        89 ~~~~~v~~Ll~~~~~~~~~~~~~~~~~~g~t~L~~A~  125 (236)
T 1ikn_D           89 GCLASVGVLTQSCTTPHLHSILKATNYNGHTCLHLAS  125 (236)
T ss_dssp             TCHHHHHHHHHSTTTTSSSCGGGCCCTTCCCHHHHHH
T ss_pred             CCHHHHHHHHhcccchhHHHHhhccCCCCCCHHHHHH
Confidence            67777777777764     335667777777777777

>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*

Probab=94.08  E-value=0.04  Score=40.48  Aligned_cols=34  Identities=15%  Similarity=0.069  Sum_probs=27.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.|++..++ +...|.+|+|+||+|++.
T Consensus       121 ~~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~~~  154 (237)
T 3b7b_A          121 YKHVDLVKLLLSKGSD-INIRDNEENICLHWAAFS  154 (237)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCccCCCCCCHHHHHHHC
Confidence            4788999999987665 466788999999999953

>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit); transcription factor, IKB/NFKB complex; 2.30A {Homo sapiens} SCOP: d.211.1.1 PDB: 1nfi_E

Probab=93.99  E-value=0.038  Score=40.90  Aligned_cols=32  Identities=28%  Similarity=0.178  Sum_probs=25.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++|+.|+++-.+ +..+|.+|+|+||+|+
T Consensus        55 ~~~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   86 (236)
T 1ikn_D           55 TNQPEIAEALLGAGCD-PELRDFRGNTPLHLAC   86 (236)
T ss_dssp             TTCHHHHHCCCSCCCC-SCCCCTTCCCHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHH
Confidence            4788888888886433 5668889999999998

>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}

Probab=93.96  E-value=0.029  Score=44.42  Aligned_cols=33  Identities=9%  Similarity=0.151  Sum_probs=29.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++-.+ +..+|.+|+|+||+|++
T Consensus       221 ~g~~~~v~~Ll~~gad-~~~~d~~g~tpL~~A~~  253 (364)
T 3ljn_A          221 INWEDVAMRFVEMGID-VNMEDNEHTVPLYLSVR  253 (364)
T ss_dssp             TTCHHHHHHHHTTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHHH
Confidence            5899999999998666 47889999999999994

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=93.76  E-value=0.03  Score=43.42  Aligned_cols=31  Identities=23%  Similarity=0.137  Sum_probs=18.4

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++|+.|+++..+ +...|.+|+|+||+|+
T Consensus        73 g~~~~v~~Ll~~ga~-~~~~d~~g~t~L~~A~  103 (285)
T 3kea_A           73 EDTKIVKILLFSGLD-DSQFDDKGNTALYYAV  103 (285)
T ss_dssp             SSCHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCcHHHHHH
Confidence            556666666665444 3345666666666666

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=93.58  E-value=0.038  Score=46.67  Aligned_cols=32  Identities=13%  Similarity=0.177  Sum_probs=23.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.++|+.|+++-.+ +..+|.+|+|+||+|+
T Consensus       184 ~g~~~~v~~Ll~~ga~-vn~~d~~g~TpLh~A~  215 (497)
T 3lvq_E          184 QASLPLVDFIIQNGGH-LDAKAADGNTALHYAA  215 (497)
T ss_dssp             TTTHHHHHHHHHHSCC-TTCCCSSSCCHHHHHT
T ss_pred             cccHHHHHHHHHcCCC-CCccCCCCCcHHHHHH
Confidence            4777888888876543 4567778888888887

>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*

Probab=93.41  E-value=0.054  Score=40.53  Aligned_cols=33  Identities=15%  Similarity=0.010  Sum_probs=26.7

Q ss_pred             CChHHHHHHHHHhCcccceecc--------------CCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEED--------------TNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D--------------~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++..+. ...|              .+|+|+||+|++
T Consensus       103 ~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  149 (260)
T 3jxi_A          103 RRCKHYVELLVEKGADV-HAQARGRFFQPKDEGGYFYFGELPLSLAAC  149 (260)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCEECCCSSSCCCCSCCSCSSHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCc-CccccccccCcccccccccCCCCHHHHHHH
Confidence            58999999999986654 3344              689999999994

>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1, ankyrin repeat domain, transport protein; HET: ATP; 2.70A {Rattus norvegicus} PDB: 2nyj_A*

Probab=93.02  E-value=0.064  Score=40.61  Aligned_cols=33  Identities=15%  Similarity=0.050  Sum_probs=26.8

Q ss_pred             CChHHHHHHHHHhCcccceeccC--------------CCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDT--------------NGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~--------------~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++.++. ...|+              +|+|+||+|++
T Consensus       111 ~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~~~~~~~~~~g~tpL~~A~~  157 (273)
T 2pnn_A          111 RRNMTLVTLLVENGADV-QAAANGDFFKKTKGRPGFYFGELPLSLAAC  157 (273)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCBCSGGGSSCSSSCCCCSCBSHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCc-CccccccccccccccccccCCCCHHHHHHH
Confidence            58999999999997664 34444              79999999994

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=92.80  E-value=0.019  Score=47.61  Aligned_cols=35  Identities=6%  Similarity=0.015  Sum_probs=27.7

Q ss_pred             CChHHHHHHHHHhCcccce-eccCCCCchhHHHH-HH
Q 045880            1 MGVIEIVEKILDAFLVAIQ-EEDTNGKNIVLLAY-TD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~-~~D~~g~niLHvAv-~~   35 (142)
                      +|+.|+|+.|+++.++... ..|.+|+|+||+|+ ++
T Consensus       173 ~G~~eiv~~Ll~~ga~~~~~~~d~~g~TpL~~Aa~~~  209 (376)
T 2aja_A          173 NGHLHVLNRLCELAPTEATAMIQAENYYAFRWAAVGR  209 (376)
T ss_dssp             TTCHHHHHHHHHSCGGGHHHHHHHHHHHHHHHHHSTT
T ss_pred             CCCHHHHHHHHHcCCccchhccCCCCCCHHHHHHHHC
Confidence            5888888888888877654 57888899999998 53

>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats, cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP: d.211.1.1

Probab=92.80  E-value=0.039  Score=43.75  Aligned_cols=31  Identities=19%  Similarity=0.209  Sum_probs=28.0

Q ss_pred             HHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            4 IEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      .+++++|++.....+..+|.+|+|+||+|++
T Consensus       180 ~~~~~~ll~~~~~~~~~~d~~g~tpLh~A~~  210 (327)
T 1sw6_A          180 SGTFEALLDYLYPCLILEDSMNRTILHHIII  210 (327)
T ss_dssp             TTCHHHHHHHHGGGGGEECTTCCCHHHHHHH
T ss_pred             HHHHHHHHHhhhccccCCCCCCCCHHHHHHH
Confidence            6888999998877789999999999999996

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=92.72  E-value=0.075  Score=39.21  Aligned_cols=29  Identities=14%  Similarity=0.111  Sum_probs=16.9

Q ss_pred             ChHHHHHHHHHhCcccceecc-CCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEED-TNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D-~~g~niLHvAv   33 (142)
                      |+.+.++.+++..++.   +| .+|+|+||+|+
T Consensus        17 g~~~~~~~l~~~~~~~---~~~~~g~T~Lh~A~   46 (186)
T 3t8k_A           17 GTYEDFLELFEKGYED---KESVLKSNILYDVL   46 (186)
T ss_dssp             SCHHHHHHHHHHSSSC---HHHHHTTTHHHHHT
T ss_pred             CCHHHHHHHHhcCccc---ccccCCCCHHHHHH
Confidence            5666666666655432   23 55666666666

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=92.53  E-value=0.072  Score=43.05  Aligned_cols=31  Identities=13%  Similarity=0.176  Sum_probs=13.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+|+.|++...+ +...|.+|+|+||+|+
T Consensus        58 g~~~~v~~Ll~~g~~-~~~~~~~g~t~L~~A~   88 (437)
T 1n11_A           58 GHTEVAKYLLQNKAK-VNAKAKDDQTPLHCAA   88 (437)
T ss_dssp             TCHHHHHHHHHHTCC-SSCCCTTSCCHHHHHH
T ss_pred             CCHHHHHHHHhCCCC-CCCCCCCCCCHHHHHH
Confidence            444444444444322 2334444455555554

>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}

Probab=92.52  E-value=0.059  Score=39.78  Aligned_cols=30  Identities=13%  Similarity=0.045  Sum_probs=16.9

Q ss_pred             hHHHHHHHHHhCcccceeccCCCC-chhHHHH
Q 045880            3 VIEIVEKILDAFLVAIQEEDTNGK-NIVLLAY   33 (142)
Q Consensus         3 ~~eiV~~ll~~~P~~~~~~D~~g~-niLHvAv   33 (142)
                      ..|+|+.|+++- .-+..+|.+|+ |+||+|+
T Consensus        93 ~~~iv~~Ll~~G-adin~~d~~g~ttpLh~A~  123 (186)
T 3t8k_A           93 TTELCKIFLEKG-ADITALYKPYKIVVFKNIF  123 (186)
T ss_dssp             HHHHHHHHHHTT-CCSSSCBGGGTBCTTGGGG
T ss_pred             HHHHHHHHHHCC-CCCCccCCCcCchHHHHHH
Confidence            456666666553 23445566666 6666663

>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1, linkers, alternat splicing; HET: GDP; 3.38A {Homo sapiens} PDB: 3lvr_E*

Probab=92.52  E-value=0.078  Score=44.76  Aligned_cols=33  Identities=9%  Similarity=0.149  Sum_probs=28.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|+.|+++-.+ +..+|.+|+|+||+|++
T Consensus       217 ~g~~~~v~~Ll~~ga~-~~~~d~~g~tpl~~A~~  249 (497)
T 3lvq_E          217 YNQPDCLKLLLKGRAL-VGTVNEAGETALDIARK  249 (497)
T ss_dssp             TTCHHHHHHHHHTCCC-CSCCCTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-CCCcCCCCCCHHHHHHH
Confidence            5899999999998554 67789999999999994

>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and SOCS box-containing...; ASB9, ANK repeat, L-shaped, structural protein; 2.20A {Homo sapiens}

Probab=92.48  E-value=0.084  Score=40.78  Aligned_cols=31  Identities=19%  Similarity=0.125  Sum_probs=23.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|++...+ +...|.+|+|+||+|+
T Consensus       168 g~~~~v~~Ll~~g~~-~~~~d~~g~t~L~~A~  198 (285)
T 3d9h_A          168 GHVECVNSLIAYGGN-IDHKISHLGTPLYLAC  198 (285)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCBTTTBCHHHHHH
T ss_pred             CCHHHHHHHHHCCCC-CCCcCCCCCCHHHHHH
Confidence            678888888877554 4567888888888888

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=92.38  E-value=0.092  Score=43.43  Aligned_cols=31  Identities=6%  Similarity=-0.057  Sum_probs=18.8

Q ss_pred             ChHHHHHHHHHhCcccceecc--CCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEED--TNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D--~~g~niLHvAv   33 (142)
                      |+.++|+.|++...+. ...|  .+|+|+||+|+
T Consensus       211 g~~~~v~~LL~~Gadv-n~~~~~~~g~TpLh~Aa  243 (368)
T 3jue_A          211 PSLPTMADALAHGADV-NWVNGGQDNATPLIQAT  243 (368)
T ss_dssp             CCHHHHHHHHHTTCCT-TCCCTTTTCCCHHHHHH
T ss_pred             CCHHHHHHHHHcCCCC-CccccccCCCCHHHHHH
Confidence            6666777766665543 2233  66667777776

>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1

Probab=92.10  E-value=0.071  Score=43.07  Aligned_cols=31  Identities=10%  Similarity=0.228  Sum_probs=15.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.|+++-.+ +...|..|+|+||+|+
T Consensus       289 ~~~~~~~~Ll~~g~~-~~~~~~~g~t~L~~A~  319 (437)
T 1n11_A          289 GHVPVADVLIKHGVM-VDATTRMGYTPLHVAS  319 (437)
T ss_dssp             TCHHHHHHHHHHTCC-TTCCCSSCCCHHHHHH
T ss_pred             CCHHHHHHHHhCCcc-CCCCCCCCCCHHHHHH
Confidence            455555555554222 3344555555555555

>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}

Probab=91.41  E-value=0.13  Score=39.85  Aligned_cols=33  Identities=15%  Similarity=0.098  Sum_probs=23.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCC-CchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNG-KNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g-~niLHvAv~   34 (142)
                      +|+.++|+.|+++..+ +...|.+| +|+||+|++
T Consensus       105 ~g~~~~v~~Ll~~ga~-~~~~~~~g~~t~L~~A~~  138 (285)
T 3kea_A          105 SGNMQTVKLFVKKNWR-LMFYGKTGWKTSFYHAVM  138 (285)
T ss_dssp             TTCHHHHHHHHHHCGG-GGGCSSSGGGSHHHHHHH
T ss_pred             cCCHHHHHHHHhcCCC-CCccCCCCCCCHHHHHHH
Confidence            4677788888877544 45667777 688888773

>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix, ankyrin repeat, gene regulation/signalling protein/DNA complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1

Probab=91.35  E-value=0.1  Score=42.03  Aligned_cols=33  Identities=21%  Similarity=0.227  Sum_probs=28.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++-.+ +..+|.+|+|+||+|++
T Consensus       323 ~g~~~iv~~Ll~~gad-~~~~d~~g~t~l~~A~~  355 (373)
T 2fo1_E          323 EGRIEVVMYLIQQGAS-VEAVDATDHTARQLAQA  355 (373)
T ss_dssp             HTCHHHHHHHHHTTCC-SSCCCSSSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-ccCCCCCCCCHHHHHHH
Confidence            4889999999997444 56789999999999995

>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing protein 1; arfgap domain, zinc-binding module, GTPase activ metal-binding, nitration; 2.30A {Homo sapiens} PDB: 3t9k_A 4f1p_A

Probab=89.68  E-value=0.2  Score=41.34  Aligned_cols=32  Identities=16%  Similarity=0.148  Sum_probs=26.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      .|+.++|+.|++.-.+ +...|.+|+|+||+|+
T Consensus       245 ~g~~~iv~~LL~~Gad-vn~~d~~G~TpLh~A~  276 (368)
T 3jue_A          245 ANSLLACEFLLQNGAN-VNQADSAGRGPLHHAT  276 (368)
T ss_dssp             TTCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHH
T ss_pred             CCCHHHHHHHHHcCCC-CCCCCCCCCCHHHHHH
Confidence            4889999999988444 5678999999999999

>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics, PSI, protein structure initiative; 2.80A {Legionella pneumophila} SCOP: a.118.24.1

Probab=80.14  E-value=0.61  Score=38.49  Aligned_cols=34  Identities=12%  Similarity=0.144  Sum_probs=21.8

Q ss_pred             CChHHHHHHHHHhCcccc-eeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAI-QEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~-~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++.||.. ...+.+++|+||+|++
T Consensus       138 ~G~~eiv~~Ll~~gad~~~~~i~~~~~TpLh~Aa~  172 (376)
T 2aja_A          138 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE  172 (376)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHH
T ss_pred             cCCHHHHHHHHhCCCCccccccCCCCCCHHHHHHH
Confidence            478888888888876521 1112222888888884

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	142
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	97.68
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	97.37
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	97.02
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	97.01
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	96.99
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	96.85
d1ixva_	229	26S proteasome non-ATPase regulatory subunit 10, g	96.81
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	96.81
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	96.76
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	96.7
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	96.69
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	96.52
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	96.52
d1dcqa1	154	Pyk2-associated protein beta {Mouse (Mus musculus)	96.47
d1ihba_	156	p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]	96.33
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1ycsb1	130	53BP2 {Human (Homo sapiens) [TaxId: 9606]}	96.08
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	96.05
d1myoa_	118	Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]	95.96
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	95.86
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	95.83
d1oy3d_	255	Transcription factor inhibitor I-kappa-B-beta, IKB	95.79
d1n11a_	408	Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}	95.75
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	95.74
d1s70b_	291	Myosin phosphatase targeting subunit 1, MYPT1 {Chi	95.58
d1wdya_	285	RNase L, 2-5a-dependent ribonuclease {Human (Homo	95.46
d1uoha_	223	26S proteasome non-ATPase regulatory subunit 10, g	94.99
d1bd8a_	156	Cell cycle inhibitor p19ink4D {Human (Homo sapiens	94.87
d1sw6a_	301	Swi6 ankyrin-repeat fragment {Baker's yeast (Sacch	94.75
d2fo1e1	277	Lin-12 {Caenorhabditis elegans [TaxId: 6239]}	94.72
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	94.35
d1bi7b_	125	Cell cycle inhibitor p16ink4A {Human (Homo sapiens	93.54
d1ot8a_	209	Neurogenic locus notch receptor domain {Fruit fly	93.09
d1iknd_	221	I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606	92.51
d2ajaa1	346	Hypothetical protein LPG2416 {Legionella pneumophi	89.83
d1k1aa_	228	bcl-3 {Human (Homo sapiens) [TaxId: 9606]}	88.55
d1awcb_	153	GA bindinig protein (GABP) beta 1 {Mouse (Mus musc	85.24

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.4e-05  Score=58.46  Aligned_cols=35  Identities=14%  Similarity=0.131  Sum_probs=33.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|++|.|++++...|..+..+|++|+|+||+|+.+
T Consensus        13 ~G~~~~v~~~l~~~~~~~~~~D~~G~TpLh~Aa~~   47 (223)
T d1uoha_          13 SGKLEELKESILADKSLATRTDQDSRTALHWACSA   47 (223)
T ss_dssp             TTCHHHHHHHHHHCGGGGGCCCTTSCCHHHHHHHH
T ss_pred             hCCHHHHHHHHHhCCCcCcCcCCCCCCHHHHHHHh
Confidence            59999999999999999999999999999999943

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=97.37  E-value=4e-05  Score=54.94  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=32.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++|++|++..|+.+..+|.+|+|+||+|+.
T Consensus        10 ~g~~~~v~~Ll~~~~~~~~~~d~~G~TpL~~A~~   43 (229)
T d1ixva_          10 ENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVS   43 (229)
T ss_dssp             HTCHHHHHHHHHHCGGGTTCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCCCCCCHHHHHHH
Confidence            4889999999999999999999999999999994

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.02  E-value=0.00018  Score=52.65  Aligned_cols=32  Identities=28%  Similarity=0.547  Sum_probs=14.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.|+|+.|++.++.-+..+|.+|+|+||+|+
T Consensus       230 ~~~~~v~~lL~~~g~din~~d~~G~TpL~~A~  261 (285)
T d1wdya_         230 KHLGLVQRLLEQEHIEINDTDSDGKTALLLAV  261 (285)
T ss_dssp             TCHHHHHHHHHSSSCCTTCCCTTSCCHHHHHH
T ss_pred             CcHHHHHHHHHcCCCCCcCCCCCCCCHHHHHH
Confidence            34444444444444334444444444444444

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.01  E-value=0.00019  Score=48.54  Aligned_cols=33  Identities=18%  Similarity=0.263  Sum_probs=23.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+++.|+++.|+-...+|.+|+|+||+|++
T Consensus       110 ~~~~~~~~Ll~~~~~~~~~~d~~g~TpL~~A~~  142 (156)
T d1ihba_         110 GHLRVVEFLVKHTASNVGHRNHKGDTACDLARL  142 (156)
T ss_dssp             TCHHHHHHHHHHSCCCTTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccccccCCCCCCHHHHHHH
Confidence            566777777777776666677777777777763

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.99  E-value=0.00016  Score=49.23  Aligned_cols=33  Identities=15%  Similarity=0.138  Sum_probs=29.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++..| +..+|++|+|+||+|+.
T Consensus        11 ~G~~~~v~~Ll~~g~d-~n~~d~~g~t~Lh~A~~   43 (130)
T d1ycsb1          11 EGEFDLVQRIIYEVDD-PSLPNDEGITALHNAVC   43 (130)
T ss_dssp             HTCHHHHHHHTSTTSS-CCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCC-ccccccccccccccccc
Confidence            4899999999998777 57889999999999994

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.85  E-value=0.00031  Score=46.92  Aligned_cols=34  Identities=12%  Similarity=0.039  Sum_probs=29.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|++|+|+.|+++..+ +..+|.+|+|+||+|+..
T Consensus        12 ~g~~~~v~~Ll~~g~d-~n~~~~~g~t~lh~A~~~   45 (118)
T d1myoa_          12 NGDLDEVKDYVAKGED-VNRTLEGGRKPLHYAADC   45 (118)
T ss_dssp             TTCHHHHHHHHTTTCC-CCCCSSSSCCTTHHHHHH
T ss_pred             CCCHHHHHHHHHhhhc-cccccccccccccccccc
Confidence            5999999999998665 567899999999999954

>d1ixva_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=96.81  E-value=0.00022  Score=50.88  Aligned_cols=33  Identities=18%  Similarity=0.243  Sum_probs=26.8

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.++++.|++..++.+..+|++|+|+||+|++
T Consensus       149 ~~~~~~~~Ll~~~~~~in~~d~~g~TpLh~A~~  181 (229)
T d1ixva_         149 GSLKLIELLCGLGKSAVNWQDKQGWTPLFHALA  181 (229)
T ss_dssp             TCHHHHHHHHTTTCCCSCCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccccccccccccCCchhhhcc
Confidence            677888888888777788888888888888884

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.81  E-value=0.00045  Score=46.45  Aligned_cols=33  Identities=18%  Similarity=0.009  Sum_probs=29.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.||+..++..  .|..|+|+||+|+..
T Consensus        12 ~g~~~~v~~LL~~ga~~~--~~~~g~t~L~~a~~~   44 (153)
T d1awcb_          12 AGQDDEVRILMANGAPFT--TDWLGTSPLHLAAQY   44 (153)
T ss_dssp             HTCHHHHHHHHHHTCCCC--CCTTCCCHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCcc--cccCCCccccccccc
Confidence            489999999999988754  699999999999953

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=0.00041  Score=46.68  Aligned_cols=34  Identities=21%  Similarity=0.052  Sum_probs=25.3

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCC-chhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGK-NIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~-niLHvAv~~   35 (142)
                      +|+.|+|+.|+++..+. ...|++|+ ++||+|++.
T Consensus        45 ~g~~~~v~~Ll~~ga~~-~~~~~~~~~~~L~~A~~~   79 (125)
T d1bi7b_          45 MGSARVAELLLLHGAEP-NCADPATLTRPVHDAARE   79 (125)
T ss_dssp             TTCHHHHHHHHTTTCCC-CCCCTTTCCCHHHHHHHH
T ss_pred             ccccccccccccccccc-cccccccccccccccccc
Confidence            47889999999886664 45566665 689999953

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.70  E-value=0.00021  Score=49.08  Aligned_cols=33  Identities=21%  Similarity=0.253  Sum_probs=30.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|++|++..+.-....|..|+|+||+|+
T Consensus        12 ~g~~~~vk~lL~~~~~~~n~~d~~g~t~L~~A~   44 (156)
T d1bd8a_          12 RGDVQEVRRLLHRELVHPDALNRFGKTALQVMM   44 (156)
T ss_dssp             HTCHHHHHHHHHTTCCCTTCCCTTSCCHHHHSC
T ss_pred             cCCHHHHHHHHHhCCCCCCccCCCCCccccccc
Confidence            489999999999988888999999999999998

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00039  Score=47.55  Aligned_cols=34  Identities=15%  Similarity=0.221  Sum_probs=29.0

Q ss_pred             CChHHHHHHHHHhCccc---ceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVA---IQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~---~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++..++.   +..+|.+|+|+||+|+.
T Consensus        13 ~g~~~~v~~Ll~~~~~~g~~in~~d~~g~TpL~~A~~   49 (228)
T d1k1aa_          13 QGNLPAVHRLVNLFQQGGRELDIYNNLRQTPLHLAVI   49 (228)
T ss_dssp             TTCHHHHHHHHHHHHHTTCCSCCCCTTSCCHHHHHHH
T ss_pred             cCCHHHHHHHHHHHHHCCCCCCccCCCCCccceehhc
Confidence            58999999999875543   67889999999999994

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00099  Score=48.05  Aligned_cols=35  Identities=11%  Similarity=-0.024  Sum_probs=30.1

Q ss_pred             CChHHHHHHHHHh--CcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDA--FLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~--~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++|+.|++.  .|..+...|.+|+|+||+|++.
T Consensus        19 ~~~~~~v~~Ll~~~a~~~~i~~~~~~g~TpL~~A~~~   55 (255)
T d1oy3d_          19 HQHEPFLDFLLGFSAGHEYLDLQNDLGQTALHLAAIL   55 (255)
T ss_dssp             TTCHHHHHHHHHHHTTSGGGGCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHHcCCCcccccCcCCCCCCccchHHhh
Confidence            5889999999876  5778888999999999999943

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.52  E-value=0.00078  Score=47.57  Aligned_cols=34  Identities=9%  Similarity=0.133  Sum_probs=29.0

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.|++...+ +..+|.+|+|+||+|+++
T Consensus        58 ~~~~~iv~~Ll~~gad-in~~d~~g~TpLh~A~~~   91 (154)
T d1dcqa1          58 RTSLHIVDFLVQNSGN-LDKQTGKGSTALHYCCLT   91 (154)
T ss_dssp             TTTHHHHHHHHHHCSC-TTCCCTTCCCHHHHHHHT
T ss_pred             CCCHHHHHHHHHcCCC-hhhhhhhhcccccccccc
Confidence            3788999999998666 578999999999999943

>d1dcqa1 d.211.1.1 (A:369-522) Pyk2-associated protein beta {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Pyk2-associated protein beta
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.47  E-value=0.00094  Score=47.13  Aligned_cols=33  Identities=12%  Similarity=0.093  Sum_probs=27.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|+++-++. ..+|.+|+|+||+|++
T Consensus        91 ~~~~~~v~~Ll~~gad~-~~~d~~g~tpL~~A~~  123 (154)
T d1dcqa1          91 TDNAECLKLLLRGKASI-EIANESGETPLDIAKR  123 (154)
T ss_dssp             TTCHHHHHHHHHTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             cccccccccccccCccc-cccCCCCCCHHHHHHH
Confidence            48889999999887665 6789999999999984

>d1ihba_ d.211.1.1 (A:) p18ink4C(ink6) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: p18ink4C(ink6)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.33  E-value=0.00041  Score=46.84  Aligned_cols=32  Identities=13%  Similarity=0.251  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|++|+|+.|+++-+| +..+|++|+|+||+|+
T Consensus        11 ~g~~~~v~~Ll~~g~d-~n~~d~~g~TpL~~A~   42 (156)
T d1ihba_          11 RGDLEQLTSLLQNNVN-VNAQNGFGRTALQVMK   42 (156)
T ss_dssp             HTCHHHHHHHTTSCCC-TTCCCTTSCCHHHHCC
T ss_pred             cCCHHHHHHHHHCCCC-cCccCCcccccccccc
Confidence            4899999999998776 4678999999999998

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0013  Score=50.09  Aligned_cols=31  Identities=19%  Similarity=0.230  Sum_probs=16.6

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.+++.. .-+..+|.+|+|+||+|+
T Consensus       308 ~~~~~~~~ll~~g-~~in~~d~~G~T~Lh~A~  338 (408)
T d1n11a_         308 GNIKLVKFLLQHQ-ADVNAKTKLGYSPLHQAA  338 (408)
T ss_dssp             SCSHHHHHHHHTT-CCTTCCCTTSCCHHHHHH
T ss_pred             Ccceeeeeecccc-ccccccCCCCCCHHHHHH
Confidence            4445555555542 224555566666666666

>d1ycsb1 d.211.1.1 (B:327-456) 53BP2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 53BP2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.0015  Score=44.16  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=28.5

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.|++...+ +...|.+|+|+||+|++
T Consensus        44 ~~~~~~~~~ll~~g~~-~~~~d~~g~tpLh~A~~   76 (130)
T d1ycsb1          44 AGHTEIVKFLVQFGVN-VNAADSDGWTPLHCAAS   76 (130)
T ss_dssp             HTCHHHHHHHHHHTCC-TTCCCTTCCCHHHHHHH
T ss_pred             cccccccccccccccc-cccccccCcccccccch
Confidence            3789999999998655 57789999999999994

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=96.05  E-value=0.00028  Score=51.36  Aligned_cols=35  Identities=14%  Similarity=0.102  Sum_probs=28.4

Q ss_pred             CChHHHHHHHHHhCccc-------ceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVA-------IQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~-------~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.|+.+.+..       +..+|.+|+|+||+|++.
T Consensus        43 ~g~~~~v~~Ll~~~~~~~l~~Gadvn~~d~~G~TpLh~A~~~   84 (277)
T d2fo1e1          43 NSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLA   84 (277)
T ss_dssp             TTCCSCCTTHHHHHHHHHHHTCCCTTCCCTTSCCHHHHHHHH
T ss_pred             cCCHHHHHHHHhcchhHHHHcCCCccccCCCCCeeecccccc
Confidence            47889999998876643       456899999999999953

>d1myoa_ d.211.1.1 (A:) Myotrophin {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myotrophin
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.96  E-value=0.0015  Score=43.40  Aligned_cols=33  Identities=27%  Similarity=0.179  Sum_probs=28.4

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.++++.++++.++ +..+|.+|+|+||+|++
T Consensus        45 ~~~~~~~~~ll~~g~d-in~~d~~g~tpLh~A~~   77 (118)
T d1myoa_          45 CGQLEILEFLLLKGAD-INAPDKHHITPLLSAVY   77 (118)
T ss_dssp             HSTTTHHHHHHHSSCT-TTCCSSSCSCHHHHHHT
T ss_pred             ccccccccccccccce-eeecccccccchhhhhh
Confidence            3788999999998776 56789999999999994

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.86  E-value=0.0026  Score=46.58  Aligned_cols=33  Identities=21%  Similarity=0.161  Sum_probs=29.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|++|+|+.|+++-.| +...|++|+|+||+|++
T Consensus        50 ~G~~~~v~~Ll~~Gad-vn~~d~~G~T~L~~A~~   82 (291)
T d1s70b_          50 SGDTEEVLRLLERGAD-INYANVDGLTALHQACI   82 (291)
T ss_dssp             HTCHHHHHHHHHHCCC-TTCBCTTCCBHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCccCCCCCcHHHHHHh
Confidence            4999999999998666 56889999999999995

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.83  E-value=0.0011  Score=47.45  Aligned_cols=32  Identities=28%  Similarity=0.316  Sum_probs=22.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      |+.++++.++...++.-...|.+|+|+||+|+
T Consensus       122 ~~~~~~~~l~~~~~~~~~~~~~~G~T~L~~A~  153 (221)
T d1iknd_         122 GYLGIVELLVSLGADVNAQEPCNGRTALHLAV  153 (221)
T ss_dssp             TCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHH
T ss_pred             CChhheeeecccCcccccccccCCCCcccccc
Confidence            56677777777766666666677777777777

>d1oy3d_ d.211.1.1 (D:) Transcription factor inhibitor I-kappa-B-beta, IKBB {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Transcription factor inhibitor I-kappa-B-beta, IKBB
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.79  E-value=0.0032  Score=45.25  Aligned_cols=34  Identities=26%  Similarity=0.130  Sum_probs=29.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++..++.....|..|+|+||+|++
T Consensus       168 ~~~~~~v~~Ll~~~~~~~~~~~~~g~TpL~~A~~  201 (255)
T d1oy3d_         168 HKDAEMVRLLRDAGADLNKPEPTCGRTPLHLAVE  201 (255)
T ss_dssp             TTCHHHHHHHHHHTCCTTCCCTTTCCCHHHHHHH
T ss_pred             ccccccccchhccccccccccccccccccccccc
Confidence            4788999999998888887788899999999984

>d1n11a_ d.211.1.1 (A:) Ankyrin-R {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Ankyrin-R
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.75  E-value=0.0026  Score=48.43  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=26.7

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.|+|+.|+++-.+ +...|.+|+|+||+|+++
T Consensus        10 ~g~~~~v~~Ll~~g~~-in~~d~~g~TpL~~A~~~   43 (408)
T d1n11a_          10 MGHLPIVKNLLQRGAS-PNVSNVKVETPLHMAARA   43 (408)
T ss_dssp             HTCHHHHHHHHHTTCC-SCCSSSCCCCHHHHHHHH
T ss_pred             CcCHHHHHHHHHCCCC-CCCCCCCCCCHHHHHHHc
Confidence            4888999999987433 567788999999999943

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=95.74  E-value=0.0008  Score=47.11  Aligned_cols=32  Identities=16%  Similarity=0.114  Sum_probs=28.2

Q ss_pred             HHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            4 IEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         4 ~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      -|+|+.|+++.+|+-...|.+|+|+||+|+++
T Consensus         2 ~~~v~~Ll~~g~din~~~d~~G~t~L~~A~~~   33 (209)
T d1ot8a_           2 AQVISDLLAQGAELNATMDKTGETSLHLAARF   33 (209)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHT
T ss_pred             HHHHHHHHHCCCCcCcCcCCCCCCHHHHHHHc
Confidence            48999999999996666899999999999943

>d1s70b_ d.211.1.1 (B:) Myosin phosphatase targeting subunit 1, MYPT1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Myosin phosphatase targeting subunit 1, MYPT1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=95.58  E-value=0.0015  Score=47.99  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=18.0

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLA   32 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvA   32 (142)
                      |+.++++.|++...+ +...|.+|+|+||+|
T Consensus       210 ~~~~~~~~Ll~~g~d-in~~~~~g~TpL~~A  239 (291)
T d1s70b_         210 GYTEVLKLLIQARYD-VNIKDYDGWTPLHAA  239 (291)
T ss_dssp             TCHHHHHHHHTTTCC-TTCCCTTCCCHHHHH
T ss_pred             CChhhhcccccceec-ccccccCCCCHHHHH
Confidence            556666666665444 345566666666664

>d1wdya_ d.211.1.1 (A:) RNase L, 2-5a-dependent ribonuclease {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: RNase L, 2-5a-dependent ribonuclease
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.46  E-value=0.0047  Score=44.69  Aligned_cols=34  Identities=15%  Similarity=0.129  Sum_probs=28.9

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      +|++|+|+.|+++-++.-...|..|+|+||+|+.
T Consensus        15 ~~~~e~vk~Ll~~G~din~~~~~~g~tpL~~A~~   48 (285)
T d1wdya_          15 NEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQ   48 (285)
T ss_dssp             TTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHH
T ss_pred             cCCHHHHHHHHHCCCCcCccCCCCCCCHHHHHHH
Confidence            5899999999999888655556689999999994

>d1uoha_ d.211.1.1 (A:) 26S proteasome non-ATPase regulatory subunit 10, gankyrin {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: 26S proteasome non-ATPase regulatory subunit 10, gankyrin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.99  E-value=0.0082  Score=43.01  Aligned_cols=33  Identities=24%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      |+.|+++.|+++.++ +...|++|+|+||+|+++
T Consensus        81 ~~~~i~~~Ll~~~~d-~~~~d~~g~tpL~~A~~~  113 (223)
T d1uoha_          81 GRDEIVKALLGKGAQ-VNAVNQNGCTPLHYAASK  113 (223)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHHH
T ss_pred             cccchhHHHhccCce-eEeeCCCCCchhhHHHHc
Confidence            788999999998765 467899999999999954

>d1bd8a_ d.211.1.1 (A:) Cell cycle inhibitor p19ink4D {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p19ink4D
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.87  E-value=0.011  Score=39.98  Aligned_cols=32  Identities=25%  Similarity=0.166  Sum_probs=22.1

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |+.|+++.|++..++ +...+.+|+++||.|++
T Consensus        46 ~~~~~v~~Ll~~~~~-~~~~~~~~~~~l~~~~~   77 (156)
T d1bd8a_          46 GSTAIALELLKQGAS-PNVQDTSGTSPVHDAAR   77 (156)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTSCCHHHHHHH
T ss_pred             ccccccccccccccc-ccccccccccccccccc
Confidence            566777777777665 35566777777777773

>d1sw6a_ d.211.1.1 (A:) Swi6 ankyrin-repeat fragment {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Swi6 ankyrin-repeat fragment
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=94.75  E-value=0.0098  Score=44.82  Aligned_cols=32  Identities=16%  Similarity=0.168  Sum_probs=24.6

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|+++--+ +..+|++|+|+||.|+
T Consensus       117 ~g~~~~v~~Ll~~gad-~~~~d~~G~TpL~~A~  148 (301)
T d1sw6a_         117 IANLELVKHLVKHGSN-RLYGDNMGESCLVKAV  148 (301)
T ss_dssp             TTCHHHHHHHHHTTCC-TTBCCTTCCCHHHHHH
T ss_pred             cCCHHHHHHHHHCCCC-CCcCCcccccHHHHhh
Confidence            4788888888877554 3467888888888888

>d2fo1e1 d.211.1.1 (E:1021-1297) Lin-12 {Caenorhabditis elegans [TaxId: 6239]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Lin-12
species: Caenorhabditis elegans [TaxId: 6239]

Probab=94.72  E-value=0.012  Score=42.26  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=30.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      .|+.++++.++...+......|..|+|+||+|+++
T Consensus       197 ~~~~~~~~~~l~~~~~~~~~~d~~g~tpL~~A~~~  231 (277)
T d2fo1e1         197 VSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQE  231 (277)
T ss_dssp             SCCHHHHHHHHHHSCCCTTCCCTTCCCHHHHHHHH
T ss_pred             cccccccccccccccccccccCCCCCCHHHHHHHc
Confidence            36788899989888888888999999999999954

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=94.35  E-value=0.0033  Score=48.98  Aligned_cols=34  Identities=9%  Similarity=0.130  Sum_probs=26.2

Q ss_pred             CChHHHHHHHHHhCccc-ceeccCCCCchhHHHHH
Q 045880            1 MGVIEIVEKILDAFLVA-IQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~-~~~~D~~g~niLHvAv~   34 (142)
                      +|+.|+|+.|++..|+. ....+.+|+|+||+|++
T Consensus       136 ~G~~~~v~~Ll~~g~~~~~~~~~~~g~t~L~~Aa~  170 (346)
T d2ajaa1         136 NGHLHVLNRLCELAPTEIMAMIQAENYHAFRLAAE  170 (346)
T ss_dssp             TTCHHHHHHHHHSCTTTHHHHHSHHHHHHHHHHHH
T ss_pred             CCCHHHHHHHHHcCCCccccccccCCCChhHHHHH
Confidence            58889999999888875 33455678889999984

>d1bi7b_ d.211.1.1 (B:) Cell cycle inhibitor p16ink4A {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Cell cycle inhibitor p16ink4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.028  Score=37.11  Aligned_cols=32  Identities=19%  Similarity=0.240  Sum_probs=27.2

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|++|+|+.|+++-.+ +..+|.+|+|+||+|+
T Consensus        13 ~G~~~~v~~Ll~~gad-~n~~~~~g~t~l~~a~   44 (125)
T d1bi7b_          13 RGRVEEVRALLEAGAN-PNAPNSYGRRPIQVMM   44 (125)
T ss_dssp             HTCHHHHHHHHTTTCC-TTCCCSSSCCTTTSSC
T ss_pred             CCCHHHHHHHHHcCCc-cccccccccccccccc
Confidence            4899999999998544 4578999999999887

>d1ot8a_ d.211.1.1 (A:) Neurogenic locus notch receptor domain {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: Neurogenic locus notch receptor domain
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=93.09  E-value=0.032  Score=38.45  Aligned_cols=32  Identities=19%  Similarity=0.156  Sum_probs=23.2

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |..++++.+++...+ +...|++|+|+||+|+.
T Consensus       134 ~~~~~~~~l~~~~~~-~~~~d~~g~TpL~~A~~  165 (209)
T d1ot8a_         134 NNTEAVNILLMHHAN-RDAQDDKDETPLFLAAR  165 (209)
T ss_dssp             TCHHHHHHHHHTTCC-TTCCCTTCCCHHHHHHH
T ss_pred             Ccceeeeeecccccc-ccccccccccccchhcc
Confidence            566777777777555 46678888888888884

>d1iknd_ d.211.1.1 (D:) I-kappa-B-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: I-kappa-B-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.51  E-value=0.046  Score=38.47  Aligned_cols=32  Identities=13%  Similarity=0.131  Sum_probs=23.1

Q ss_pred             CChHHHHHHHHHhCcccceeccCCCCchhHHHH
Q 045880            1 MGVIEIVEKILDAFLVAIQEEDTNGKNIVLLAY   33 (142)
Q Consensus         1 ~G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv   33 (142)
                      +|+.|+|+.|+++-.| +..+|++|+|+||+|+
T Consensus       155 ~g~~~~v~~Ll~~gad-~~~~~~~G~tpl~~A~  186 (221)
T d1iknd_         155 LQNPDLVSLLLKCGAD-VNRVTYQGYSPYQLTW  186 (221)
T ss_dssp             TTCHHHHHHHHTTTCC-SCCCCTTCCCGGGGCT
T ss_pred             cccHHHHHHHHhcCCc-ccccCCCCCCHHHHHH
Confidence            3677777777776665 5667777777777777

>d2ajaa1 a.118.24.1 (A:3-348) Hypothetical protein LPG2416 {Legionella pneumophila [TaxId: 446]}

class: All alpha proteins
fold: alpha-alpha superhelix
superfamily: Pseudo ankyrin repeat-like
family: Pseudo ankyrin repeat
domain: Hypothetical protein LPG2416
species: Legionella pneumophila [TaxId: 446]

Probab=89.83  E-value=0.019  Score=44.42  Aligned_cols=35  Identities=11%  Similarity=0.068  Sum_probs=23.6

Q ss_pred             CChHHHHHHH--HHhCcccceeccCCCCchhHHHHHH
Q 045880            1 MGVIEIVEKI--LDAFLVAIQEEDTNGKNIVLLAYTD   35 (142)
Q Consensus         1 ~G~~eiV~~l--l~~~P~~~~~~D~~g~niLHvAv~~   35 (142)
                      +|+.++++.+  |-.+..-+..+|.+|+|+||+|+++
T Consensus       100 ~g~~~~~~~~~~L~~~~~~in~~~~~g~taL~~Aa~~  136 (346)
T d2ajaa1         100 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAEN  136 (346)
T ss_dssp             HCCHHHHHHHTTC--CCSSCC--CHHHHHHHHHHHHT
T ss_pred             hCCHHHHHHHHHHHhCCCcccccCCCCCCHHHHHHHC
Confidence            4777777653  4444556788999999999999953

>d1k1aa_ d.211.1.1 (A:) bcl-3 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: bcl-3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.55  E-value=0.19  Score=33.23  Aligned_cols=32  Identities=13%  Similarity=0.166  Sum_probs=18.7

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      |..++++.+++. +......|.+|+|+||+|++
T Consensus       155 ~~~~~~~~~~~~-~~~~~~~d~~g~t~L~~A~~  186 (228)
T d1k1aa_         155 NSLSMVQLLLQH-GANVNAQMYSGSSALHSASG  186 (228)
T ss_dssp             TCHHHHHHHHHT-TCCTTCBCTTSCBHHHHHHH
T ss_pred             hhhhhhhhhhhh-ccccccccccCcchHHHHHH
Confidence            344555555554 33445566677777777773

>d1awcb_ d.211.1.1 (B:) GA bindinig protein (GABP) beta 1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a+b)
fold: beta-hairpin-alpha-hairpin repeat
superfamily: Ankyrin repeat
family: Ankyrin repeat
domain: GA bindinig protein (GABP) beta 1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=85.24  E-value=0.29  Score=31.80  Aligned_cols=32  Identities=22%  Similarity=0.118  Sum_probs=22.9

Q ss_pred             ChHHHHHHHHHhCcccceeccCCCCchhHHHHH
Q 045880            2 GVIEIVEKILDAFLVAIQEEDTNGKNIVLLAYT   34 (142)
Q Consensus         2 G~~eiV~~ll~~~P~~~~~~D~~g~niLHvAv~   34 (142)
                      ++.++++.++....+. ..+|.+|+|+||+|++
T Consensus        78 ~~~~~~~~l~~~~~~~-~~~~~~g~T~L~~A~~  109 (153)
T d1awcb_          78 GHANIVEVLLKHGADV-NAKDMLKMTALHWATE  109 (153)
T ss_dssp             TCHHHHHHHHTTTCCT-TCCCTTSCCHHHHHHH
T ss_pred             ccceeeecccccCCcc-ccccccCchHHHhhhh
Confidence            3567777777765543 4578889999999883