Citrus Sinensis ID: 045945

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120--
Protein Sequence
MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEccEEEEcccEEEEEcccccHHHHHHHccccccccccccccccccEEEEEEEEEccccccccHHHHHccEEEEEEEEEccccEEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccHccHcHcccEEEEEEEccccEEEcccccEEEcccHHHHHHHHHcccccccccccccccccEEEEEEccEEccccccccHHHHHHcEEEccccEEcccEEEEcccHHHHH
Coil and Loop (DISEMBL)
mesiemstvrlptsclfqtaptrmkfplvkspgslvsrsVSKAFGLKSSSFKVSAMAVYklpyscragacstcaglmvsgsvdqsdgsflddnqmeKGYVLTCiaypksdcviythkeseln
Flexible Loop (DISEMBL)
mesiemstvrlptsclfqtaptrmkfplvkspgslVSRSVSKAfglksssfkVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN
Low Complexity Region (SEG)
MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN
Disordered region (IsUnstruct)
************TSCLFQTAPTRMKFPLV*************AFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVD***GSFLDDNQMEKGYVLTCIAYPKSDCVIYT*******
Disordered Region (DISOPRED)
*********************************SLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE****
Disordered Region (DISEMBL)
*********RLPTSCLFQTAPTRMKFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN
Disordered Region (DISPRO)
*****************QTAPTRMKFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	122	2.2.26 [Sep-21-2011]
P27788	152	Ferredoxin-3, chloroplast	N/A	no	0.950	0.763	0.516	3e-28
Q9ZQG8	155	Ferredoxin-3, chloroplast	yes	no	0.950	0.748	0.461	1e-26
P14937	98	Ferredoxin, root R-B2 OS=	N/A	no	0.639	0.795	0.637	1e-24
P00248	99	Ferredoxin OS=Mastigoclad	N/A	no	0.508	0.626	0.790	1e-24
P94044	155	Ferredoxin-6, chloroplast	N/A	no	0.581	0.458	0.647	6e-24
P00253	99	Ferredoxin OS=Nostoc musc	N/A	no	0.516	0.636	0.761	9e-24
P0A3C7	99	Ferredoxin-1 OS=Nostoc sp	yes	no	0.516	0.636	0.761	9e-24
P0A3C8	99	Ferredoxin-1 OS=Anabaena	N/A	no	0.516	0.636	0.761	9e-24
P00247	99	Ferredoxin OS=Chlorogloeo	N/A	no	0.508	0.626	0.774	2e-23
P83522	97	Ferredoxin OS=Hordeum vul	N/A	no	0.508	0.639	0.758	3e-23

>sp|P27788|FER3_MAIZE Ferredoxin-3, chloroplastic OS=Zea mays GN=FDX3 PE=2 SV=1

 Score =  123 bits (308), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 78/151 (51%), Positives = 87/151 (57%), Gaps = 35/151 (23%)

Query: 6   MSTVRLPTSC--LFQTAPTRMKFPLVKSPGSLVSRS-VSKAFGLKSSS-FKVSAMAVYK- 60
           MST    TSC  L     T+     VKSP SL   S V+K   LK+S    VSAMAVYK 
Sbjct: 1   MSTSTFATSCTLLGNVRTTQASQTAVKSPSSLSFFSQVTKVPSLKTSKKLDVSAMAVYKV 60

Query: 61  ------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGSFL 90
                                         LPYSCRAGACSTCAG + SGSVDQSDGSFL
Sbjct: 61  KLVGPEGEEHEFDAPDDAYILDAAETAGVELPYSCRAGACSTCAGKIESGSVDQSDGSFL 120

Query: 91  DDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           DD Q E+GYVLTC++YPKSDCVI+THKE +L
Sbjct: 121 DDGQQEEGYVLTCVSYPKSDCVIHTHKEGDL 151

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.
Zea mays (taxid: 4577)

>sp|Q9ZQG8|FER3_ARATH Ferredoxin-3, chloroplastic OS=Arabidopsis thaliana GN=FD3 PE=1 SV=1

 Score =  118 bits (295), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/154 (46%), Positives = 92/154 (59%), Gaps = 38/154 (24%)

Query: 6   MSTVRLPTSCLFQT---APTRMKFPLVKSPGSLV--SRSVSKAFGLKSSSFKVSAM--AV 58
           M+TVR+ ++ + +    + T  K    KS    V  ++ VS++FGLK S+    A   AV
Sbjct: 1   MATVRISSTSMTKAVLRSQTTNKLITNKSYNLSVGSTKRVSRSFGLKCSANSGGATMSAV 60

Query: 59  YK-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDG 87
           YK                               LPYSCRAGACSTCAG +VSG+VDQSDG
Sbjct: 61  YKVKLLGPDGQEDEFEVQDDQYILDAAEEAGVDLPYSCRAGACSTCAGQIVSGNVDQSDG 120

Query: 88  SFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           SFL+D+ +EKGYVLTC+AYP+SDCVI+THKE+EL
Sbjct: 121 SFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETEL 154

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Arabidopsis thaliana (taxid: 3702)

>sp|P14937|FER2_RAPSA Ferredoxin, root R-B2 OS=Raphanus sativus PE=1 SV=1

 Score =  111 bits (278), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/80 (63%), Positives = 63/80 (78%), Gaps = 2/80 (2%)

Query: 44  FGLKSSSFKVSAM--AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVL 101
           F ++   F + A   A   LPYSCRAGACSTCAG +V G VDQS+GSFL+D+  EKG+VL
Sbjct: 18  FEVQDDQFILDAAEEAGVDLPYSCRAGACSTCAGQIVKGQVDQSEGSFLEDDHFEKGFVL 77

Query: 102 TCIAYPKSDCVIYTHKESEL 121
           TC+AYP+SDCVI+THKE+EL
Sbjct: 78  TCVAYPQSDCVIHTHKETEL 97

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Raphanus sativus (taxid: 3726)

>sp|P00248|FER_MASLA Ferredoxin OS=Mastigocladus laminosus GN=petF PE=1 SV=2

 Score =  111 bits (277), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 55/62 (88%)

Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG ++SG+VDQSD SFLDD+Q+E GYVLTC+AYP SDCVI THKE 
Sbjct: 37  DLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEE 96

Query: 120 EL 121
           EL
Sbjct: 97  EL 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Mastigocladus laminosus (taxid: 83541)

>sp|P94044|FER6_MAIZE Ferredoxin-6, chloroplastic OS=Zea mays GN=FDX6 PE=2 SV=1

 Score =  109 bits (272), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 46/71 (64%), Positives = 59/71 (83%)

Query: 51  FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSD 110
            + +  A  +LP+SCRAG+CSTCAG M +G VDQS+GSFLDD QM +GY+LTCI+YPK+D
Sbjct: 84  LEAAETAGVELPFSCRAGSCSTCAGRMSAGEVDQSEGSFLDDGQMAEGYLLTCISYPKAD 143

Query: 111 CVIYTHKESEL 121
           CVI+THKE +L
Sbjct: 144 CVIHTHKEEDL 154

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Zea mays (taxid: 4577)

>sp|P00253|FER_NOSMU Ferredoxin OS=Nostoc muscorum PE=1 SV=2

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 36  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 95

Query: 119 SEL 121
            +L
Sbjct: 96  EDL 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Nostoc muscorum (taxid: 1179)

>sp|P0A3C7|FER1_NOSS1 Ferredoxin-1 OS=Nostoc sp. (strain PCC 7120 / UTEX 2576) GN=petF PE=1 SV=2

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 36  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 95

Query: 119 SEL 121
            +L
Sbjct: 96  EDL 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Nostoc sp. (strain PCC 7120 / UTEX 2576) (taxid: 103690)

>sp|P0A3C8|FER1_ANASO Ferredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=petF PE=1 SV=2

 Score =  108 bits (270), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 36  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 95

Query: 119 SEL 121
            +L
Sbjct: 96  EDL 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Anabaena sp. (strain PCC 7119) (taxid: 1168)

>sp|P00247|FER_CHLFR Ferredoxin OS=Chlorogloeopsis fritschii PE=1 SV=2

 Score =  107 bits (267), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 48/62 (77%), Positives = 53/62 (85%)

Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG + SG+VDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE 
Sbjct: 37  DLPYSCRAGACSTCAGKIKSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 96

Query: 120 EL 121
           EL
Sbjct: 97  EL 98

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Chlorogloeopsis fritschii (taxid: 1124)

>sp|P83522|FER_HORVU Ferredoxin OS=Hordeum vulgare PE=1 SV=1

 Score =  107 bits (266), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 54/62 (87%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAG+CS+CAG +VSG +DQSD SFLDD+QME+G+VLTC AYPKSD VI THKE E
Sbjct: 35  LPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEE 94

Query: 121 LN 122
           L 
Sbjct: 95  LT 96

Ferredoxins are iron-sulfur proteins that transfer electrons in a wide variety of metabolic reactions.

Hordeum vulgare (taxid: 4513)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
224100605	155	predicted protein [Populus trichocarpa]	0.950	0.748	0.603	4e-40
224113441	155	predicted protein [Populus trichocarpa]	0.950	0.748	0.597	2e-38
296080982	168	unnamed protein product [Vitis vinifera]	0.983	0.714	0.578	4e-38
351727909	154	uncharacterized protein LOC100500583 [Gl	0.991	0.785	0.562	1e-37
388508992	156	unknown [Medicago truncatula]	0.991	0.775	0.568	1e-37
351721286	154	uncharacterized protein LOC100305886 [Gl	0.991	0.785	0.555	2e-37
388511551	154	unknown [Medicago truncatula]	0.991	0.785	0.555	9e-37
359486978	351	PREDICTED: uncharacterized protein LOC10	0.959	0.333	0.583	9e-37
217071412	156	unknown [Medicago truncatula]	0.991	0.775	0.562	1e-36
449446283	149	PREDICTED: ferredoxin-3, chloroplastic-l	0.950	0.778	0.581	3e-36

>gi|224100605|ref|XP_002311943.1| predicted protein [Populus trichocarpa] gi|222851763|gb|EEE89310.1| predicted protein [Populus trichocarpa]

 Score =  168 bits (425), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 93/154 (60%), Positives = 108/154 (70%), Gaps = 38/154 (24%)

Query: 6   MSTVRLPTSCLFQTAPTR-MKFP-----LVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAV 58
           MSTVRLPT+C+ ++AP R +  P     L+KSPG+L S R+VSKAFGLKSSSFKVSAMAV
Sbjct: 1   MSTVRLPTTCMIRSAPPRKVASPSKSCALIKSPGALGSVRNVSKAFGLKSSSFKVSAMAV 60

Query: 59  YK-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDG 87
           YK                               LPYSCRAGACSTCAG++VSGSVDQSDG
Sbjct: 61  YKAKLIAPDGCEHEFDAPGDTYILDSAENAGVELPYSCRAGACSTCAGMLVSGSVDQSDG 120

Query: 88  SFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           SFLD+ QMEKGYVLTC++YP SDCVI+THKE +L
Sbjct: 121 SFLDEKQMEKGYVLTCVSYPTSDCVIHTHKEEDL 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224113441|ref|XP_002316497.1| predicted protein [Populus trichocarpa] gi|118487568|gb|ABK95610.1| unknown [Populus trichocarpa] gi|222865537|gb|EEF02668.1| predicted protein [Populus trichocarpa]

 Score =  162 bits (411), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 92/154 (59%), Positives = 106/154 (68%), Gaps = 38/154 (24%)

Query: 6   MSTVRLPTSCLFQTAP-TRMKFP-----LVKSPGSLVSR-SVSKAFGLKSSSFKVSAMAV 58
           MST RLPT+C+ ++AP +++  P     L+KSPG+L S  SVSKAFGLKSSSFKVSAMAV
Sbjct: 1   MSTARLPTTCMIRSAPPSKVASPSRSCALIKSPGALGSAMSVSKAFGLKSSSFKVSAMAV 60

Query: 59  YK-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDG 87
           YK                               LPYSCRAGACSTCAG+MVSGSVDQSDG
Sbjct: 61  YKVKLIMPDGCEHEFDAPDDTYILDSAENAGVELPYSCRAGACSTCAGMMVSGSVDQSDG 120

Query: 88  SFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           SFLD+ QMEKGYVLTCI+YP SD VI+THKE +L
Sbjct: 121 SFLDEKQMEKGYVLTCISYPTSDSVIHTHKEEDL 154

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|296080982|emb|CBI18580.3| unnamed protein product [Vitis vinifera]

 Score =  161 bits (408), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 88/152 (57%), Positives = 102/152 (67%), Gaps = 32/152 (21%)

Query: 2   ESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVYK 60
           +S+ MSTV LPT  LF++AP +    L++SPGSL S RS SKAFGLKSSSF+VSAMAVYK
Sbjct: 16  KSVNMSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYK 75

Query: 61  -------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGSF 89
                                          LPYSCRAGACSTCAG MV GSVDQSDGSF
Sbjct: 76  VKLIGPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSF 135

Query: 90  LDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           LD+ QM+ GYVLTC++YP SD VI+THKE +L
Sbjct: 136 LDEKQMDNGYVLTCVSYPTSDSVIHTHKEGDL 167

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351727909|ref|NP_001236409.1| uncharacterized protein LOC100500583 [Glycine max] gi|255630677|gb|ACU15698.1| unknown [Glycine max]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 102/153 (66%), Gaps = 32/153 (20%)

Query: 1   MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVY 59
           M ++ MST+RLP + L  T P R    L KSP SL S ++VSK FGLKSSSF+VSAMAVY
Sbjct: 1   MSAVNMSTMRLPRASLSGTTPARRSCALTKSPSSLRSVKNVSKVFGLKSSSFRVSAMAVY 60

Query: 60  K-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGS 88
           K                               LPYSCRAGACSTCAG +VSGSVDQ+D S
Sbjct: 61  KVKLIGPDGEENEFEAPDDTYILDSAENAGVELPYSCRAGACSTCAGQVVSGSVDQADQS 120

Query: 89  FLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           FLDD+Q+EKGY+LTC++YPKSDCVI+THKE +L
Sbjct: 121 FLDDHQIEKGYLLTCVSYPKSDCVIHTHKEEDL 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508992|gb|AFK42562.1| unknown [Medicago truncatula]

 Score =  160 bits (404), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 87/153 (56%), Positives = 102/153 (66%), Gaps = 32/153 (20%)

Query: 1   MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVY 59
           M ++ MS VRL T+ L+ TAP+R    L KSP SL S ++VSK FGLKSSSF+VSAMAVY
Sbjct: 3   MSAVNMSAVRLTTASLYGTAPSRTSCALRKSPSSLRSVKNVSKTFGLKSSSFRVSAMAVY 62

Query: 60  K-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGS 88
           K                               LPYSCRAGACSTCAG +V+GSVDQSD S
Sbjct: 63  KVKLIGPDGTENEFDAPDDSYILDSAEDAGVELPYSCRAGACSTCAGQVVTGSVDQSDQS 122

Query: 89  FLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           FLD+ Q+EKGY+LTC++YPKSD VIYTHKE EL
Sbjct: 123 FLDEQQIEKGYLLTCVSYPKSDTVIYTHKEEEL 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721286|ref|NP_001238228.1| uncharacterized protein LOC100305886 [Glycine max] gi|255626885|gb|ACU13787.1| unknown [Glycine max]

 Score =  159 bits (403), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 103/153 (67%), Gaps = 32/153 (20%)

Query: 1   MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVY 59
           M ++ MSTVRLP + L  T P R    L+K+P SL S ++VSK FGLKSSSF+VSAMAVY
Sbjct: 1   MAALNMSTVRLPRASLSGTTPARRSCALIKNPSSLRSVKNVSKVFGLKSSSFRVSAMAVY 60

Query: 60  K-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGS 88
           K                               LPYSCRAGACSTCAG +VSGSVDQ+D S
Sbjct: 61  KVKLIGPDGEENEFEAPDDTYILDAAENAGVELPYSCRAGACSTCAGHVVSGSVDQADQS 120

Query: 89  FLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           FLDD+Q++KGY+LTC++YPKSDCVI+THKE +L
Sbjct: 121 FLDDHQIKKGYLLTCVSYPKSDCVIHTHKEEDL 153

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388511551|gb|AFK43837.1| unknown [Medicago truncatula]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 85/153 (55%), Positives = 102/153 (66%), Gaps = 32/153 (20%)

Query: 1   MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVY 59
           M ++ MST+RLPT+ L  TA +R    L+K+P +L S ++VSK FGLKSSSF++SAMAVY
Sbjct: 1   MSAVNMSTMRLPTASLHGTASSRTSCALLKNPSTLRSVKNVSKRFGLKSSSFRISAMAVY 60

Query: 60  K-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGS 88
           K                               LPYSCRAGACSTCAG +VSGSVDQSD S
Sbjct: 61  KVKLIQPDGTENEFDAPDDYYILDSAEEAGVELPYSCRAGACSTCAGQVVSGSVDQSDQS 120

Query: 89  FLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           FLD  Q+EKGY+LTC++YPKSD VIYTHKE EL
Sbjct: 121 FLDKQQIEKGYLLTCVSYPKSDTVIYTHKEEEL 153

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359486978|ref|XP_002267623.2| PREDICTED: uncharacterized protein LOC100266537 [Vitis vinifera]

 Score =  157 bits (396), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 87/149 (58%), Positives = 99/149 (66%), Gaps = 32/149 (21%)

Query: 5   EMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVYK--- 60
            MSTV LPT  LF++AP +    L++SPGSL S RS SKAFGLKSSSF+VSAMAVYK   
Sbjct: 202 NMSTVSLPTPFLFKSAPLKKSCALIRSPGSLGSVRSTSKAFGLKSSSFRVSAMAVYKVKL 261

Query: 61  ----------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDD 92
                                       LPYSCRAGACSTCAG MV GSVDQSDGSFLD+
Sbjct: 262 IGPDGEESEFDAPDDVYILDSAENAGLELPYSCRAGACSTCAGQMVLGSVDQSDGSFLDE 321

Query: 93  NQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
            QM+ GYVLTC++YP SD VI+THKE +L
Sbjct: 322 KQMDNGYVLTCVSYPTSDSVIHTHKEGDL 350

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|217071412|gb|ACJ84066.1| unknown [Medicago truncatula]

 Score =  156 bits (395), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 86/153 (56%), Positives = 101/153 (66%), Gaps = 32/153 (20%)

Query: 1   MESIEMSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVY 59
           M ++ MS VRL T+ L+ TAP+R    L KSP SL S ++VSK FGLKSSSF+VSAMAVY
Sbjct: 3   MSAVNMSAVRLTTASLYGTAPSRTSCALRKSPSSLRSVKNVSKTFGLKSSSFRVSAMAVY 62

Query: 60  K-------------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGS 88
           K                               LPYSC AGACSTCAG +V+GSVDQSD S
Sbjct: 63  KVKLIGPDGTENEFDAPDDSYILDSAEDAGVELPYSCGAGACSTCAGQVVTGSVDQSDQS 122

Query: 89  FLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           FLD+ Q+EKGY+LTC++YPKSD VIYTHKE EL
Sbjct: 123 FLDEQQIEKGYLLTCVSYPKSDTVIYTHKEEEL 155

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446283|ref|XP_004140901.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Cucumis sativus] gi|449446285|ref|XP_004140902.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 2 [Cucumis sativus] gi|449494152|ref|XP_004159464.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 1 [Cucumis sativus] gi|449494156|ref|XP_004159465.1| PREDICTED: ferredoxin-3, chloroplastic-like isoform 2 [Cucumis sativus]

 Score =  155 bits (392), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 86/148 (58%), Positives = 97/148 (65%), Gaps = 32/148 (21%)

Query: 6   MSTVRLPTSCLFQTAPTRMKFPLVKSPGSLVS-RSVSKAFGLKSSSFKVSAMAVYK---- 60
           MSTV LPTS L +    R    LV+ P SL S RSVS++FGLKSS FKVSAMA YK    
Sbjct: 1   MSTVTLPTSSLIKPPTLRRSNALVQRPSSLCSFRSVSRSFGLKSSQFKVSAMASYKVKLI 60

Query: 61  ---------------------------LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDN 93
                                      LPYSCRAGACSTCAG +VSG+VDQ+DGSFLDD 
Sbjct: 61  GPDGEENEFDAPDDAYILDSAENAGLDLPYSCRAGACSTCAGQVVSGTVDQTDGSFLDDK 120

Query: 94  QMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           QMEKGYVLTC+AYP+SDCVI+THKE +L
Sbjct: 121 QMEKGYVLTCVAYPQSDCVIHTHKEGDL 148

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	122
TAIR|locus:2038593	155	FD3 "ferredoxin 3" [Arabidopsi	0.5	0.393	0.819	7.6e-29
TAIR|locus:2197349	148	FD1 "ferredoxin 1" [Arabidopsi	0.5	0.412	0.737	8.2e-26
TAIR|locus:2206061	148	FED A [Arabidopsis thaliana (t	0.5	0.412	0.704	2.4e-24
UNIPROTKB|P0A3C8	99	petF "Ferredoxin-1" [Nostoc sp	0.516	0.636	0.761	7.8e-23
UNIPROTKB|P27320	97	petF "Ferredoxin-1" [Synechocy	0.5	0.628	0.770	1.3e-22
UNIPROTKB|P83522	97	P83522 "Ferredoxin" [Hordeum v	0.5	0.628	0.770	3.4e-22
UNIPROTKB|P09911	149	PETF "Ferredoxin-1, chloroplas	0.5	0.409	0.737	1.9e-21
UNIPROTKB|P0A3C9	98	petF1 "Ferredoxin-1" [Thermosy	0.5	0.622	0.721	1.9e-21
UNIPROTKB|P83525	97	P83525 "Ferredoxin" [Scopolia	0.516	0.649	0.682	2.4e-21
UNIPROTKB|P83582	97	P83582 "Ferredoxin" [Solanum n	0.516	0.649	0.682	2.4e-21

TAIR|locus:2038593 FD3 "ferredoxin 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 286 (105.7 bits), Expect = 7.6e-29, Sum P(2) = 7.6e-29
 Identities = 50/61 (81%), Positives = 59/61 (96%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LPYSCRAGACSTCAG +VSG+VDQSDGSFL+D+ +EKGYVLTC+AYP+SDCVI+THKE+E
Sbjct:    94 LPYSCRAGACSTCAGQIVSGNVDQSDGSFLEDSHLEKGYVLTCVAYPQSDCVIHTHKETE 153

Query:   121 L 121
             L
Sbjct:   154 L 154

GO:0009055 "electron carrier activity" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009536 "plastid" evidence=IDA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

TAIR|locus:2197349 FD1 "ferredoxin 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 250 (93.1 bits), Expect = 8.2e-26, Sum P(2) = 8.2e-26
 Identities = 45/61 (73%), Positives = 52/61 (85%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LPYSCRAG+CS+CAG +VSGS+DQSD SFLDD QM +GYVLTC+AYP SD VI THKE  
Sbjct:    87 LPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMSEGYVLTCVAYPTSDVVIETHKEEA 146

Query:   121 L 121
             +
Sbjct:   147 I 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009570 "chloroplast stroma" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0006098 "pentose-phosphate shunt" evidence=RCA

GO:0009688 "abscisic acid biosynthetic process" evidence=RCA

TAIR|locus:2206061 FED A [Arabidopsis thaliana (taxid:3702)]

 Score = 236 (88.1 bits), Expect = 2.4e-24, Sum P(2) = 2.4e-24
 Identities = 43/61 (70%), Positives = 51/61 (83%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LPYSCRAG+CS+CAG +VSGSVDQSD SFLDD Q+ +G+VLTC AYP SD  I THKE +
Sbjct:    87 LPYSCRAGSCSSCAGKVVSGSVDQSDQSFLDDEQIGEGFVLTCAAYPTSDVTIETHKEED 146

Query:   121 L 121
             +
Sbjct:   147 I 147

GO:0009055 "electron carrier activity" evidence=IEA

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0022900 "electron transport chain" evidence=IEA

GO:0051536 "iron-sulfur cluster binding" evidence=IEA

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IEA

GO:0009767 "photosynthetic electron transport chain" evidence=IMP;TAS

GO:0009416 "response to light stimulus" evidence=IEP

GO:0009570 "chloroplast stroma" evidence=TAS

GO:0009637 "response to blue light" evidence=RCA

GO:0009644 "response to high light intensity" evidence=RCA

GO:0009744 "response to sucrose stimulus" evidence=RCA

GO:0009773 "photosynthetic electron transport in photosystem I" evidence=RCA

GO:0010114 "response to red light" evidence=RCA

GO:0010155 "regulation of proton transport" evidence=RCA

GO:0010207 "photosystem II assembly" evidence=RCA

GO:0010218 "response to far red light" evidence=RCA

GO:0042742 "defense response to bacterium" evidence=RCA

UNIPROTKB|P0A3C8 petF "Ferredoxin-1" [Nostoc sp. PCC 7119 (taxid:1168)]

 Score = 264 (98.0 bits), Expect = 7.8e-23, P = 7.8e-23
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query:    59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
             Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct:    36 YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 95

Query:   119 SEL 121
              +L
Sbjct:    96 EDL 98

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P27320 petF "Ferredoxin-1" [Synechocystis sp. PCC 6803 substr. Kazusa (taxid:1111708)]

 Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
 Identities = 47/61 (77%), Positives = 53/61 (86%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE +
Sbjct:    36 LPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEED 95

Query:   121 L 121
             L
Sbjct:    96 L 96

GO:0005515 "protein binding" evidence=IPI

GO:0051537 "2 iron, 2 sulfur cluster binding" evidence=IDA

UNIPROTKB|P83522 P83522 "Ferredoxin" [Hordeum vulgare (taxid:4513)]

 Score = 258 (95.9 bits), Expect = 3.4e-22, P = 3.4e-22
 Identities = 47/61 (77%), Positives = 54/61 (88%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LPYSCRAG+CS+CAG +VSG +DQSD SFLDD+QME+G+VLTC AYPKSD VI THKE E
Sbjct:    35 LPYSCRAGSCSSCAGKLVSGEIDQSDQSFLDDDQMEEGWVLTCAAYPKSDVVIETHKEEE 94

Query:   121 L 121
             L
Sbjct:    95 L 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

UNIPROTKB|P09911 PETF "Ferredoxin-1, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 45/61 (73%), Positives = 52/61 (85%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LPYSCRAG+CS+CAG +V G VDQSDGSFLDD Q+E G+VLTC+AYP SD VI THKE +
Sbjct:    87 LPYSCRAGSCSSCAGKVVGGEVDQSDGSFLDDEQIEAGFVLTCVAYPTSDVVIETHKEED 146

Query:   121 L 121
             L
Sbjct:   147 L 147

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P0A3C9 petF1 "Ferredoxin-1" [Thermosynechococcus elongatus BP-1 (taxid:197221)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 44/61 (72%), Positives = 54/61 (88%)

Query:    61 LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
             LP+SCRAGACSTCAG ++ G VDQSD SFLDD+Q+EKG+VLTC+AYP+SDC I T++E E
Sbjct:    37 LPFSCRAGACSTCAGKLLEGEVDQSDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEE 96

Query:   121 L 121
             L
Sbjct:    97 L 97

GO:0005515 "protein binding" evidence=IPI

GO:0009055 "electron carrier activity" evidence=IDA

UNIPROTKB|P83525 P83525 "Ferredoxin" [Scopolia japonica (taxid:221162)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 43/63 (68%), Positives = 56/63 (88%)

Query:    59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
             ++LPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+QM  G+VLTC+AYP+SD +I THKE
Sbjct:    33 HELPYSCRAGSCSSCAGKVSAGTVDQSDGNFLDDDQMADGFVLTCVAYPQSDVIIETHKE 92

Query:   119 SEL 121
              EL
Sbjct:    93 EEL 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=TAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

UNIPROTKB|P83582 P83582 "Ferredoxin" [Solanum nigrum (taxid:4112)]

 Score = 250 (93.1 bits), Expect = 2.4e-21, P = 2.4e-21
 Identities = 43/63 (68%), Positives = 55/63 (87%)

Query:    59 YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
             ++LPYSCRAG+CS+CAG + +G+VDQSDG+FLDD+QM  G+VLTC+AYPKSD  I THKE
Sbjct:    33 HELPYSCRAGSCSSCAGKVTAGTVDQSDGNFLDDDQMADGFVLTCVAYPKSDVTIETHKE 92

Query:   119 SEL 121
              +L
Sbjct:    93 EDL 95

GO:0006124 "ferredoxin metabolic process" evidence=TAS

GO:0008198 "ferrous iron binding" evidence=NAS

GO:0009055 "electron carrier activity" evidence=TAS

GO:0009507 "chloroplast" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P0A3D2	FER1_SYNE7	No assigned EC number	0.7258	0.5081	0.6262	yes	no
P0A3D3	FER1_SYNP6	No assigned EC number	0.7258	0.5081	0.6262	yes	no
P31965	FER1_SYNP2	No assigned EC number	0.7384	0.5327	0.6701	yes	no
P0A3C9	FER_THEEB	No assigned EC number	0.5257	0.7622	0.9489	yes	no
P0A3C7	FER1_NOSS1	No assigned EC number	0.7619	0.5163	0.6363	yes	no
P00254	FER1_ANAVT	No assigned EC number	0.7460	0.5163	0.6363	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	122
TIGR02008	97	TIGR02008, fdx_plant, ferredoxin [2Fe-2S]	7e-38
CHL00134	99	CHL00134, petF, ferredoxin; Validated	3e-37
PTZ00038	191	PTZ00038, PTZ00038, ferredoxin; Provisional	1e-32
PLN03136	148	PLN03136, PLN03136, Ferredoxin; Provisional	6e-27
cd00207	84	cd00207, fer2, 2Fe-2S iron-sulfur cluster binding	1e-20
PRK07609	339	PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucosee	1e-18
COG0633	102	COG0633, Fdx, Ferredoxin [Energy production and co	3e-13
pfam00111	77	pfam00111, Fer2, 2Fe-2S iron-sulfur cluster bindin	2e-12
TIGR02160	352	TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenas	3e-11
PRK10684	332	PRK10684, PRK10684, HCP oxidoreductase, NADH-depen	3e-05
PRK05713	312	PRK05713, PRK05713, hypothetical protein; Provisio	8e-05
PRK11872	340	PRK11872, antC, anthranilate dioxygenase reductase	2e-04

>gnl|CDD|233684 TIGR02008, fdx_plant, ferredoxin [2Fe-2S]

 Score =  122 bits (309), Expect = 7e-38
 Identities = 47/61 (77%), Positives = 52/61 (85%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAGACSTCAG +  G+VDQSD SFLDD+QME GYVLTC+AYP SDC I THKE +
Sbjct: 36  LPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPTSDCTIETHKEED 95

Query: 121 L 121
           L
Sbjct: 96  L 96

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins. Length = 97

>gnl|CDD|177056 CHL00134, petF, ferredoxin; Validated

 Score =  121 bits (306), Expect = 3e-37
 Identities = 45/63 (71%), Positives = 52/63 (82%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
             LPYSCRAGACSTCAG +  G+VDQSD SFLDD+Q+E G+VLTC+AYP SDC I TH+E
Sbjct: 36  IDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPTSDCTILTHQE 95

Query: 119 SEL 121
            EL
Sbjct: 96  EEL 98

Length = 99

>gnl|CDD|240237 PTZ00038, PTZ00038, ferredoxin; Provisional

 Score =  113 bits (283), Expect = 1e-32
 Identities = 39/61 (63%), Positives = 45/61 (73%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCR G+CSTCA  ++ G VD  D S+LDD Q++KGY L C  YPKSDC I THKE E
Sbjct: 128 LPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPKSDCTIETHKEDE 187

Query: 121 L 121
           L
Sbjct: 188 L 188

Length = 191

>gnl|CDD|178681 PLN03136, PLN03136, Ferredoxin; Provisional

 Score = 97.1 bits (241), Expect = 6e-27
 Identities = 67/155 (43%), Positives = 84/155 (54%), Gaps = 42/155 (27%)

Query: 1   MESIEMSTVRLPTSCLF-QTAPTRMKFPLVKSPGSLVSRSVSKAFGLKSSSFK---VSAM 56
           M S  +S+  + TS L  Q  P  ++        SL S +    FGLKSS+ +   V+AM
Sbjct: 1   MASTALSSAIVSTSFLRRQQTPISLR--------SLPSANTQSLFGLKSSTARGGRVTAM 52

Query: 57  AVYK------------------------------LPYSCRAGACSTCAGLMVSGSVDQSD 86
           A YK                              LPYSCRAG+CS+CAG +VSGS+DQSD
Sbjct: 53  ATYKVKFITPEGEQEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSD 112

Query: 87  GSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
            SFLDD Q+ +GYVLTC+AYP SD VI THKE  +
Sbjct: 113 QSFLDDEQISEGYVLTCVAYPTSDVVIETHKEEAI 147

Length = 148

>gnl|CDD|238126 cd00207, fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 79.0 bits (195), Expect = 1e-20
 Identities = 29/53 (54%), Positives = 33/53 (62%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113
           +PYSCRAGAC TC   +V G VDQSD S LD+ + E GYVL C        VI
Sbjct: 31  IPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVI 83

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin. Length = 84

>gnl|CDD|181058 PRK07609, PRK07609, CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

 Score = 78.8 bits (195), Expect = 1e-18
 Identities = 23/57 (40%), Positives = 30/57 (52%), Gaps = 2/57 (3%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDG--SFLDDNQMEKGYVLTCIAYPKSDCVI 113
             LPY C+ GAC +C G ++ G V+Q     S L   +   G  LTC A P SD V+
Sbjct: 31  IHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLSDLVL 87

Length = 339

>gnl|CDD|223706 COG0633, Fdx, Ferredoxin [Energy production and conversion]

 Score = 60.5 bits (147), Expect = 3e-13
 Identities = 21/67 (31%), Positives = 29/67 (43%), Gaps = 5/67 (7%)

Query: 61  LPYSCRAGACSTCAGLMVSG--SVDQSDGS---FLDDNQMEKGYVLTCIAYPKSDCVIYT 115
           + Y+CR GAC TC   ++ G   V   + S    LD   +E    L+C    K D  I  
Sbjct: 36  IEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIEV 95

Query: 116 HKESELN 122
            +E E  
Sbjct: 96  VEEPEYT 102

Length = 102

>gnl|CDD|215725 pfam00111, Fer2, 2Fe-2S iron-sulfur cluster binding domain

 Score = 57.9 bits (140), Expect = 2e-12
 Identities = 27/49 (55%), Positives = 34/49 (69%), Gaps = 2/49 (4%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGY-VLTCIAYPK 108
           +PYSCR G C TCA  ++ G V QSD SFL+D+++  GY VL C  YPK
Sbjct: 30  IPYSCRGGGCGTCAVKVLEGEV-QSDQSFLEDDELAAGYVVLACQTYPK 77

Length = 77

>gnl|CDD|131215 TIGR02160, PA_CoA_Oxy5, phenylacetate-CoA oxygenase/reductase, PaaK subunit

 Score = 58.7 bits (142), Expect = 3e-11
 Identities = 22/53 (41%), Positives = 34/53 (64%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113
           LP++C+ G C TC   ++ G VD      L+ ++++ GYVLTC AYP SD ++
Sbjct: 296 LPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLV 348

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA [Energy metabolism, Other]. Length = 352

>gnl|CDD|236735 PRK10684, PRK10684, HCP oxidoreductase, NADH-dependent; Provisional

 Score = 41.2 bits (97), Expect = 3e-05
 Identities = 22/61 (36%), Positives = 32/61 (52%), Gaps = 2/61 (3%)

Query: 55  AMAVYKLPY--SCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCV 112
           A+   K+P   +CRAG C  C   +VSG    S    L   ++ +GYVL C  +P+ D V
Sbjct: 271 ALESNKVPVVAACRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLV 330

Query: 113 I 113
           +
Sbjct: 331 L 331

Length = 332

>gnl|CDD|235575 PRK05713, PRK05713, hypothetical protein; Provisional

 Score = 40.1 bits (94), Expect = 8e-05
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 57  AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTC 103
           A   +PYSCRAG+C  C    + G  + +    L   + E+G+ L C
Sbjct: 26  AGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLAC 72

Length = 312

>gnl|CDD|183350 PRK11872, antC, anthranilate dioxygenase reductase; Provisional

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 2/64 (3%)

Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQS--DGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK 117
            LP  CR G C TC G   SG   Q   D   L +  + +  +L C    KSD   Y   
Sbjct: 35  NLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKSDAAFYFDF 94

Query: 118 ESEL 121
           +S L
Sbjct: 95  DSSL 98

Length = 340

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	122
PRK10684	332	HCP oxidoreductase, NADH-dependent; Provisional	99.88
TIGR02160	352	PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase,	99.86
CHL00134	99	petF ferredoxin; Validated	99.85
TIGR02008	97	fdx_plant ferredoxin [2Fe-2S]. This model represen	99.84
PLN03136	148	Ferredoxin; Provisional	99.84
PRK10713	84	2Fe-2S ferredoxin YfaE; Provisional	99.81
PTZ00038	191	ferredoxin; Provisional	99.8
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	99.72
PRK05713	312	hypothetical protein; Provisional	99.68
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	99.67
cd00207	84	fer2 2Fe-2S iron-sulfur cluster binding domain. Ir	99.62
COG0633	102	Fdx Ferredoxin [Energy production and conversion]	99.58
TIGR02007	110	fdx_isc ferredoxin, 2Fe-2S type, ISC system. This	99.57
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	99.51
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	99.49
PF00111	78	Fer2: 2Fe-2S iron-sulfur cluster binding domain; I	99.47
PLN02593	117	adrenodoxin-like ferredoxin protein	99.36
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	99.27
PTZ00490	143	Ferredoxin superfamily; Provisional	99.22
COG3894	614	Uncharacterized metal-binding protein [General fun	99.07
PRK08345	289	cytochrome-c3 hydrogenase subunit gamma; Provision	98.39
cd06221	253	sulfite_reductase_like Anaerobic sulfite reductase	98.36
PRK08221	263	anaerobic sulfite reductase subunit B; Provisional	98.33
cd06220	233	DHOD_e_trans_like2 FAD/NAD binding domain in the e	98.32
TIGR02911	261	sulfite_red_B sulfite reductase, subunit B. Member	98.18
cd06218	246	DHOD_e_trans FAD/NAD binding domain in the electro	98.09
PRK00054	250	dihydroorotate dehydrogenase electron transfer sub	98.04
cd06219	248	DHOD_e_trans_like1 FAD/NAD binding domain in the e	98.02
PRK08166	847	NADH dehydrogenase subunit G; Validated	97.96
PRK07569	234	bidirectional hydrogenase complex protein HoxU; Va	97.92
PRK06222	281	ferredoxin-NADP(+) reductase subunit alpha; Review	97.84
PRK06259	486	succinate dehydrogenase/fumarate reductase iron-su	97.81
cd06192	243	DHOD_e_trans_like FAD/NAD binding domain (electron	97.62
PF13510	82	Fer2_4: 2Fe-2S iron-sulfur cluster binding domain;	97.34
PRK12779	944	putative bifunctional glutamate synthase subunit b	97.25
cd06189	224	flavin_oxioreductase NAD(P)H dependent flavin oxid	97.22
PRK05464	409	Na(+)-translocating NADH-quinone reductase subunit	97.21
cd06188	283	NADH_quinone_reductase Na+-translocating NADH:quin	97.21
PRK12778	752	putative bifunctional 2-polyprenylphenol hydroxyla	97.18
cd06198	216	FNR_like_3 NAD(P) binding domain of ferredoxin red	97.18
cd06211	238	phenol_2-monooxygenase_like Phenol 2-monooxygenase	97.16
PRK12775	1006	putative trifunctional 2-polyprenylphenol hydroxyl	97.15
cd06196	218	FNR_like_1 Ferredoxin reductase-like proteins cata	97.12
COG1018	266	Hmp Flavodoxin reductases (ferredoxin-NADPH reduct	97.11
TIGR01941	405	nqrF NADH:ubiquinone oxidoreductase, Na(+)-translo	97.11
cd06217	235	FNR_iron_sulfur_binding_3 Iron-sulfur binding ferr	97.09
PRK05802	320	hypothetical protein; Provisional	97.09
PRK08051	232	fre FMN reductase; Validated	97.08
cd06212	232	monooxygenase_like The oxygenase reductase FAD/NAD	97.05
cd06194	222	FNR_N-term_Iron_sulfur_binding Iron-sulfur binding	97.05
cd00322	223	FNR_like Ferredoxin reductase (FNR), an FAD and NA	97.01
cd06191	231	FNR_iron_sulfur_binding Iron-sulfur binding Ferred	96.97
cd06215	231	FNR_iron_sulfur_binding_1 Iron-sulfur binding ferr	96.97
cd06209	228	BenDO_FAD_NAD Benzoate dioxygenase reductase (BenD	96.93
PRK13552	239	frdB fumarate reductase iron-sulfur subunit; Provi	96.92
cd06195	241	FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-c	96.89
PRK05713	312	hypothetical protein; Provisional	96.89
cd06187	224	O2ase_reductase_like The oxygenase reductase FAD/N	96.88
cd06210	236	MMO_FAD_NAD_binding Methane monooxygenase (MMO) re	96.84
cd06184	247	flavohem_like_fad_nad_binding FAD_NAD(P)H binding	96.81
PRK11872	340	antC anthranilate dioxygenase reductase; Provision	96.77
PRK13289	399	bifunctional nitric oxide dioxygenase/dihydropteri	96.74
cd06213	227	oxygenase_e_transfer_subunit The oxygenase reducta	96.7
cd06185	211	PDR_like Phthalate dioxygenase reductase (PDR) is	96.69
PRK07609	339	CDP-6-deoxy-delta-3,4-glucoseen reductase; Validat	96.63
PRK12575	235	succinate dehydrogenase iron-sulfur subunit; Provi	96.54
cd06214	241	PA_degradation_oxidoreductase_like NAD(P) binding	96.52
PRK08640	249	sdhB succinate dehydrogenase iron-sulfur subunit;	96.44
cd06216	243	FNR_iron_sulfur_binding_2 Iron-sulfur binding ferr	96.42
cd06190	232	T4MO_e_transfer_like Toluene-4-monoxygenase electr	96.37
PF13085	110	Fer2_3: 2Fe-2S iron-sulfur cluster binding domain;	96.34
PLN00129	276	succinate dehydrogenase [ubiquinone] iron-sulfur s	96.06
cd06183	234	cyt_b5_reduct_like Cytochrome b5 reductase catalyz	96.01
PF00175	109	NAD_binding_1: Oxidoreductase NAD-binding domain ;	95.73
cd06193	235	siderophore_interacting Siderophore interacting pr	95.65
TIGR01973	603	NuoG NADH-quinone oxidoreductase, chain G. This mo	95.64
PTZ00319	300	NADH-cytochrome B5 reductase; Provisional	95.61
PRK12814	652	putative NADPH-dependent glutamate synthase small	95.2
PTZ00306	1167	NADH-dependent fumarate reductase; Provisional	95.05
PRK12386	251	fumarate reductase iron-sulfur subunit; Provisiona	94.85
PTZ00305	297	NADH:ubiquinone oxidoreductase; Provisional	94.7
PRK09130	687	NADH dehydrogenase subunit G; Validated	94.55
cd06197	220	FNR_like_2 FAD/NAD(P) binding domain of ferredoxin	94.5
TIGR00384	220	dhsB succinate dehydrogenase and fumarate reductas	94.42
PLN03116	307	ferredoxin--NADP+ reductase; Provisional	94.29
KOG3309	159	consensus Ferredoxin [Energy production and conver	94.22
PRK12577	329	succinate dehydrogenase iron-sulfur subunit; Provi	94.0
PRK07570	250	succinate dehydrogenase/fumarate reductase iron-su	93.89
PRK07860	797	NADH dehydrogenase subunit G; Validated	93.84
PRK08493	819	NADH dehydrogenase subunit G; Validated	93.7
cd06201	289	SiR_like2 Cytochrome p450- like alpha subunits of	93.69
PRK10926	248	ferredoxin-NADP reductase; Provisional	93.63
PLN03115	367	ferredoxin--NADP(+) reductase; Provisional	93.41
COG1034	693	NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreduc	93.39
PRK09129	776	NADH dehydrogenase subunit G; Validated	93.13
PRK05950	232	sdhB succinate dehydrogenase iron-sulfur subunit;	93.1
COG4097	438	Predicted ferric reductase [Inorganic ion transpor	92.94
PRK11433	217	aldehyde oxidoreductase 2Fe-2S subunit; Provisiona	92.89
COG0479	234	FrdB Succinate dehydrogenase/fumarate reductase, F	92.81
cd06206	384	bifunctional_CYPOR These bifunctional proteins fus	92.66
cd06208	286	CYPOR_like_FNR These ferredoxin reductases are rel	92.48
PRK12576	279	succinate dehydrogenase iron-sulfur subunit; Provi	92.2
PRK12385	244	fumarate reductase iron-sulfur subunit; Provisiona	91.84
PLN02252	888	nitrate reductase [NADPH]	91.78
cd06200	245	SiR_like1 Cytochrome p450- like alpha subunits of	91.71
cd06182	267	CYPOR_like NADPH cytochrome p450 reductase (CYPOR)	91.33
KOG0534	286	consensus NADH-cytochrome b-5 reductase [Coenzyme	91.32
KOG3378	385	consensus Globins and related hemoproteins [Energy	90.82
PRK09908	159	xanthine dehydrogenase subunit XdhC; Provisional	90.7
TIGR03224	411	benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA p	89.87
KOG3049	288	consensus Succinate dehydrogenase, Fe-S protein su	88.58
cd06207	382	CyPoR_like NADPH cytochrome p450 reductase (CYPOR)	87.91
cd06202	406	Nitric_oxide_synthase The ferredoxin-reductase (FN	87.85
PTZ00274	325	cytochrome b5 reductase; Provisional	87.62
PF08030	156	NAD_binding_6: Ferric reductase NAD binding domain	87.57
COG0543	252	UbiB 2-polyprenylphenol hydroxylase and related fl	87.23
TIGR03193	148	4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamm	87.15
cd06204	416	CYPOR NADPH cytochrome p450 reductase (CYPOR) serv	84.27
COG2871	410	NqrF Na+-transporting NADH:ubiquinone oxidoreducta	84.09
PRK06214	530	sulfite reductase; Provisional	83.24
cd06199	360	SiR Cytochrome p450- like alpha subunits of E. col	82.86
cd06203	398	methionine_synthase_red Human methionine synthase	82.17

>PRK10684 HCP oxidoreductase, NADH-dependent; Provisional

Probab=99.88  E-value=7e-23  Score=164.83  Aligned_cols=91  Identities=25%  Similarity=0.471  Sum_probs=81.6

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCch-------------------------------------HHHHHHcCCCcCCC
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSS-------------------------------------FKVSAMAVYKLPYS   64 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~-------------------------------------L~a~~~~Gi~i~~~   64 (122)
                      +.++|+|||.+||+  ++++++.|+++++                                     |++++++|+++||+
T Consensus       203 ~~~vyiCGP~~m~~~v~~~l~~~Gv~~~~i~~E~F~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~lL~~~~~~gi~~~~~  282 (332)
T PRK10684        203 SRTVMTCGPAPYMDWVEQEVKALGVTADRFFKEKFFTPVAEAATSGLTFTKLQPAREFYAPVGTTLLEALESNKVPVVAA  282 (332)
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCHHHeEeeccCCCCCCcCCCceEEEEecCCEEEEeCCCChHHHHHHHcCCCccCC
Confidence            57899999999999  7788887776432                                     77788999999999


Q ss_pred             CCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           65 CRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        65 Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      ||.|.||+|++++++|++.+.....|+++++++|++|+||++|.+|++|+
T Consensus       283 C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~d~~i~  332 (332)
T PRK10684        283 CRAGVCGCCKTKVVSGEYTVSSTMTLTPAEIAQGYVLACSCHPQGDLVLA  332 (332)
T ss_pred             CCCcCCCCCEEEEecCcccccccccCCHHHHhCCcEEEeeCEECCCeEEC
Confidence            99999999999999999998766789999999999999999999998873

>TIGR02160 PA_CoA_Oxy5 phenylacetate-CoA oxygenase/reductase, PaaK subunit

Probab=99.86  E-value=2e-21  Score=156.91  Aligned_cols=94  Identities=30%  Similarity=0.594  Sum_probs=80.6

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCch-------------------------------------------------
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS-------------------------------------------------   50 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~-------------------------------------------------   50 (122)
                      ....++|+|||.+||+  ++++++.|+++++                                                 
T Consensus       205 ~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~s  284 (352)
T TIGR02160       205 DRADEWFLCGPQAMVDDAEQALTGLGVPAGRVHLELFYTDDEPGREVRHEVSGPEGDVSKVTVTLDGRSTETSSLSRDES  284 (352)
T ss_pred             ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEeccCCCCCcccccccccccCCCceEEEEEECCceEEEEecCCCCc
Confidence            3457899999999999  7777776653110                                                 


Q ss_pred             -HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCC-eEEEe
Q 045945           51 -FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSD-CVIYT  115 (122)
Q Consensus        51 -L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sd-l~I~l  115 (122)
                       |++++++|+++||+|+.|.||+|++++++|++.+.+...|+++++++|++|+||++|.+| ++|++
T Consensus       285 lL~~~~~~gi~~~~~C~~G~Cg~C~~~~~~G~v~~~~~~~l~~~~~~~g~~l~C~~~~~~~~~~~~~  351 (352)
T TIGR02160       285 VLDAALRARPDLPFACKGGVCGTCRAKVLEGKVDMERNYALEPDEVDAGYVLTCQAYPLSDKLVVDY  351 (352)
T ss_pred             HHHHHHHcCCCCcCCCCCccCCCCEEEEeccccccccccCCCHHHHhCCcEEEeeEEECCCcEEEec
Confidence             677789999999999999999999999999999987667999999999999999999987 78764

Phenylacetate-CoA oxygenase is comprised of a five gene complex responsible for the hydroxylation of phenylacetate-CoA (PA-CoA) as the second catabolic step in phenylacetic acid (PA) degradation. Although the exact function of this enzyme has not been determined, it has been shown to be required for phenylacetic acid degradation and has been proposed to function in a multicomponent oxygenase acting on phenylacetate-CoA.

>CHL00134 petF ferredoxin; Validated

Probab=99.85  E-value=1.5e-21  Score=134.57  Aligned_cols=79  Identities=57%  Similarity=1.009  Sum_probs=72.0

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++||++||+|++|.||+|+++|++|++++.+...|+++++++|++|+|+++|.+|++|+++..+.
T Consensus        18 ~~~~~~~~tLL~a~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~d~~i~~~~~~~   97 (99)
T CHL00134         18 TIDCPDDVYILDAAEEQGIDLPYSCRAGACSTCAGKVTEGTVDQSDQSFLDDDQLEAGFVLTCVAYPTSDCTILTHQEEE   97 (99)
T ss_pred             EEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEEeCccccCcccCCCHHHHhCCeEEEeeCEECCCeEEEeccccc
Confidence            45667766  9999999999999999999999999999999998776679999999999999999999999999998876


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      +
T Consensus        98 ~   98 (99)
T CHL00134         98 L   98 (99)
T ss_pred             c
Confidence            4

>TIGR02008 fdx_plant ferredoxin [2Fe-2S]

Probab=99.84  E-value=2.9e-21  Score=132.32  Aligned_cols=79  Identities=61%  Similarity=1.023  Sum_probs=71.0

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+++||+|++|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|+++++++
T Consensus        16 ~~~~~~g~tLLda~~~~Gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~l~~~~~~~g~~LaC~~~~~~di~v~~~~~~~   95 (97)
T TIGR02008        16 TIECPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKVEEGTVDQSDQSFLDDDQMEAGYVLTCVAYPTSDCTIETHKEED   95 (97)
T ss_pred             EEEECCCCcHHHHHHHcCCCCCcCCCCccCCCCceEEEeCcEecCccCCCCHHHHhCCeEEEeeCEECCCeEEEeccccc
Confidence            45556666  8999999999999999999999999999999998765669999999999999999999999999998776


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      +
T Consensus        96 ~   96 (97)
T TIGR02008        96 L   96 (97)
T ss_pred             c
Confidence            4

This model represents single domain 2Fe-2S (also called plant type) ferredoxins. In general, these occur as a single domain proteins or with a chloroplast transit peptide. Species tend to be photosynthetic, but several forms may occur in one species and individually may not be associated with photocynthesis. Halobacterial forms differ somewhat in architecture; they score between trusted and noise cutoffs. Sequences scoring below the noise cutoff tend to be ferredoxin-related domains of larger proteins.

>PLN03136 Ferredoxin; Provisional

Probab=99.84  E-value=2.5e-21  Score=142.57  Aligned_cols=80  Identities=56%  Similarity=0.964  Sum_probs=73.9

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES  119 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~  119 (122)
                      +.+.+++++  |++++++|+++||+|+.|.||+|+++|++|++++.+...|+++++++||+|+||++|.+|++|+++.++
T Consensus        66 ~~~~~~~g~tILdAa~~~Gi~lp~sCr~G~CGtC~~~l~~G~V~~~~~~~L~~~e~~~G~~LaC~a~p~sD~~Ie~~~e~  145 (148)
T PLN03136         66 QEVECEEDVYVLDAAEEAGIDLPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQISEGYVLTCVAYPTSDVVIETHKEE  145 (148)
T ss_pred             EEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEEEEecCcCccCcccCCCHHHhcCCEEEEeEeEECCCcEEecCChh
Confidence            356667777  999999999999999999999999999999999987778999999999999999999999999999998


Q ss_pred             CC
Q 045945          120 EL  121 (122)
Q Consensus       120 ~~  121 (122)
                      +|
T Consensus       146 ~l  147 (148)
T PLN03136        146 AI  147 (148)
T ss_pred             hc
Confidence            86

>PRK10713 2Fe-2S ferredoxin YfaE; Provisional

Probab=99.81  E-value=5.7e-20  Score=123.08  Aligned_cols=71  Identities=23%  Similarity=0.393  Sum_probs=60.0

Q ss_pred             HHcCCCCc-h--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEe
Q 045945           42 KAFGLKSS-S--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYT  115 (122)
Q Consensus        42 ~~~~~~~~-~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l  115 (122)
                      +.+.++++ +  |++++++|+++||+||.|.||+|++++++|++++.+..   ..++++|++|+|+++|.+|++|++
T Consensus        11 ~~~~~~~~~~tlL~a~~~~gi~~p~~Cr~G~Cg~C~~~~~sG~v~~~~~~---~~~~~~g~~L~C~~~p~sd~~ie~   84 (84)
T PRK10713         11 TQLLCQDEHPSLLAALESHNVAVEYQCREGYCGSCRTRLVAGQVDWIAEP---LAFIQPGEILPCCCRAKGDIEIEM   84 (84)
T ss_pred             cEEEecCCCCcHHHHHHHcCCCCCCCCCCeECCCCEeEEEeCeEecCCCc---cchhhCCEEEEeeCEECCCEEEeC
Confidence            34566543 3  99999999999999999999999999999999986532   235678999999999999999875

>PTZ00038 ferredoxin; Provisional

Probab=99.80  E-value=4.4e-20  Score=140.85  Aligned_cols=80  Identities=50%  Similarity=0.926  Sum_probs=73.4

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES  119 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~  119 (122)
                      +.+.+++++  |++++++||.+||+|+.|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++++
T Consensus       107 ~~~~v~~geTILdAae~aGI~lp~sCr~G~CGtCkvrV~~GeV~~~e~~~Ls~ee~~~G~~LaCqa~p~sDi~Ie~p~e~  186 (191)
T PTZ00038        107 KVIECDEDEYILDAAERQGVELPYSCRGGSCSTCAAKLLEGEVDNEDQSYLDDEQLKKGYCLLCTCYPKSDCTIETHKED  186 (191)
T ss_pred             EEEEeCCCCcHHHHHHHcCCCCCcCCCCccCCCCEeEEeecccccCccccCCHHHhcCCEEEEeeCEECCCeEEecCChH
Confidence            455667776  999999999999999999999999999999999988778999999999999999999999999999987


Q ss_pred             CC
Q 045945          120 EL  121 (122)
Q Consensus       120 ~~  121 (122)
                      ++
T Consensus       187 ~~  188 (191)
T PTZ00038        187 EL  188 (191)
T ss_pred             Hh
Confidence            65

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=99.72  E-value=8.5e-18  Score=135.21  Aligned_cols=79  Identities=30%  Similarity=0.600  Sum_probs=70.0

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCC--CCCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQS--DGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK  117 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~--~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~  117 (122)
                      +.+.+++++  |++++++|+.+||+|+.|.||+|++++++|++++.  +...|+++++++|++|+||++|.+|++|+++.
T Consensus        12 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~~   91 (339)
T PRK07609         12 RQFTAEPDETILDAALRQGIHLPYGCKNGACGSCKGRLLEGEVEQGPHQASALSGEERAAGEALTCCAKPLSDLVLEARE   91 (339)
T ss_pred             eEEEeCCCCcHHHHHHHcCCCCCCCCCCeECCCCEEEEEECcEecccccccCCCHHHHhCCcEEEeeCEECCCEEEEecc
Confidence            345566666  99999999999999999999999999999999886  34689999999999999999999999999886


Q ss_pred             CCC
Q 045945          118 ESE  120 (122)
Q Consensus       118 ~~~  120 (122)
                      .++
T Consensus        92 ~~~   94 (339)
T PRK07609         92 VPA   94 (339)
T ss_pred             ccc
Confidence            554

>PRK05713 hypothetical protein; Provisional

Probab=99.68  E-value=5.3e-17  Score=129.92  Aligned_cols=75  Identities=24%  Similarity=0.458  Sum_probs=67.1

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTH  116 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~  116 (122)
                      +++.+++++  |++++++||.+||+|++|.||+|++++++|++.......|+++++++|++|+||+++.+|++|+++
T Consensus         9 ~~~~~~~g~tlL~a~~~~gi~~~~~C~~G~Cg~C~~~~~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~   85 (312)
T PRK05713          9 RRWSVPAGSNLLDALNAAGVAVPYSCRAGSCHACLVRCLQGEPEDALPEALAAEKREQGWRLACQCRVVGDLRVEVF   85 (312)
T ss_pred             eEEEECCCCcHHHHHHHcCCCCCcCCCCcCCCCCeEEEEeCccccCccccCCHHHHhCCeEEEeECEECCceEEEec
Confidence            355667666  999999999999999999999999999999987555567899999999999999999999999976

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=99.67  E-value=1.1e-16  Score=129.73  Aligned_cols=75  Identities=28%  Similarity=0.517  Sum_probs=66.0

Q ss_pred             cCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccC--CCCCCCChhcccCCeEEeeceEECCCeEEEecCC
Q 045945           44 FGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQ--SDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE  118 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~--~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~  118 (122)
                      +.+++++  |++++++|+.+||+|+.|.||+|+++|++|+++.  .+...|+++++++|++|+||++|.+|++|+++..
T Consensus        17 ~~~~~g~tlL~a~~~~g~~~p~~C~~G~Cg~C~~~~~~G~~~~~~~~~~~l~~~~~~~g~~L~C~~~~~~d~~i~~~~~   95 (340)
T PRK11872         17 FPVGKDELLLDAALRNGINLPLDCREGVCGTCQGRCESGIYSQDYVDEDALSERDLAQRKMLACQTRVKSDAAFYFDFD   95 (340)
T ss_pred             EEeCCCCcHHHHHHHcCCCCcCCCCCeECCCCEEEEEeCccccCccccccCCHHHHhCCeEEEeeCEECCceEEEecCc
Confidence            4456666  9999999999999999999999999999999875  3345799999999999999999999999998754

>cd00207 fer2 2Fe-2S iron-sulfur cluster binding domain

Probab=99.62  E-value=5.8e-16  Score=101.22  Aligned_cols=72  Identities=42%  Similarity=0.693  Sum_probs=62.7

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      .+.++++.  |++++++|++++++|+.|.||+|+++|.+|.+.+.+...++..+..++++|+||+++.+|++|+
T Consensus        11 ~~~~~~g~~ll~al~~~g~~~~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~~~~~~~~LaC~~~~~~~i~v~   84 (84)
T cd00207          11 EVEVPEGETLLDAAREAGIDIPYSCRAGACGTCKVEVVEGEVDQSDPSLLDEEEAEGGYVLACQTRVTDGLVIE   84 (84)
T ss_pred             EEEECCCCcHHHHHHHcCCCcccCCCCcCCcCCEEEEeeCccccCcccCCCHHHHhCCeEEEEeCeeCCCcEEC
Confidence            34455555  8999999999999999999999999999999998776667777778899999999999999874

Iron-sulfur proteins play an important role in electron transfer processes and in various enzymatic reactions. The family includes plant and algal ferredoxins, which act as electron carriers in photosynthesis and ferredoxins, which participate in redox chains (from bacteria to mammals). Fold is ismilar to thioredoxin.

>COG0633 Fdx Ferredoxin [Energy production and conversion]

Probab=99.58  E-value=2.3e-15  Score=104.33  Aligned_cols=76  Identities=28%  Similarity=0.492  Sum_probs=58.3

Q ss_pred             CCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeec--cccCCCCC---CCChhcccCCeEEeeceEECCCeEEEecC
Q 045945           45 GLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSG--SVDQSDGS---FLDDNQMEKGYVLTCIAYPKSDCVIYTHK  117 (122)
Q Consensus        45 ~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G--~v~~~~~~---~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~  117 (122)
                      .+++++  |++++++||+++|+||.|.||+|+++|++|  ++......   .|.+.....++||+||+++++|+.|....
T Consensus        18 ~~~~g~tiLe~a~~~gi~i~~~C~~g~C~TC~v~v~~G~~~v~~~~~~e~~~l~~~~~~~~~rL~Cq~~~~~d~~i~~~~   97 (102)
T COG0633          18 AVNEGETLLEAAERNGIPIEYACRGGACGTCRVKVLEGFDEVSPPEESEEDLLDAAGLEGNSRLSCQCRVKGDLDIEVVE   97 (102)
T ss_pred             eccCCcHHHHHHHHCCCcceecCCCCccCccEEEEecCcccCCCcchHHHHHHHhhccCCCcEEeeeeEECCCcceEEEe
Confidence            344444  999999999999999999999999999999  66655422   22223345569999999999998876655


Q ss_pred             CCC
Q 045945          118 ESE  120 (122)
Q Consensus       118 ~~~  120 (122)
                      .+.
T Consensus        98 ~~~  100 (102)
T COG0633          98 EPE  100 (102)
T ss_pred             ccC
Confidence            443

>TIGR02007 fdx_isc ferredoxin, 2Fe-2S type, ISC system

Probab=99.57  E-value=2.2e-15  Score=105.45  Aligned_cols=78  Identities=21%  Similarity=0.315  Sum_probs=60.8

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCCCCChh------cccCCeEEeeceEEC-CCe
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGSFLDDN------QMEKGYVLTCIAYPK-SDC  111 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~~Ls~~------e~~~g~~LaCqs~~~-sdl  111 (122)
                      +.+.+++|+  |++++++|++++++|+ .|.||+|+++|++|.........+.++      +..++++|+||+++. +|+
T Consensus        16 ~~~~~~~g~tLL~a~~~~gi~i~~~CgG~G~CgtC~v~V~~G~~~~~~~~~~e~~~L~~~~~~~~~~RLaCq~~~~~~dl   95 (110)
T TIGR02007        16 AVVEAKPGETILDVALDNGIEIEHACEKSCACTTCHCIVREGFDSLEEASEQEEDMLDKAWGLEPDSRLSCQAVVADEDL   95 (110)
T ss_pred             eEEEECCCChHHHHHHHcCCCccccCCCCceeCCCEEEEeeccccCCCCCHHHHHHHhhccCCCCCcEEeeeEEEcCCCE
Confidence            345566666  9999999999999999 799999999999997554442222221      345679999999987 589


Q ss_pred             EEEecCCC
Q 045945          112 VIYTHKES  119 (122)
Q Consensus       112 ~I~l~~~~  119 (122)
                      +|+++..+
T Consensus        96 ~v~~~~~~  103 (110)
T TIGR02007        96 VVEIPKYT  103 (110)
T ss_pred             EEEECchh
Confidence            99998654

This family consists of proteobacterial ferredoxins associated with and essential to the ISC system of 2Fe-2S cluster assembly. This family is closely related to (but excludes) eukaryotic (mitochondrial) adrenodoxins, which are ferredoxins involved in electron transfer to P450 cytochromes.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=99.51  E-value=1.8e-14  Score=119.38  Aligned_cols=76  Identities=21%  Similarity=0.329  Sum_probs=65.7

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTH  116 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~  116 (122)
                      +++.+++|+  |++++++|+++|++|+ +|.||+|+++|++|++....  ...|+++++++|++|+||+++.+|++|++.
T Consensus        46 ~~~~~~~g~tLL~a~~~~gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~e~~~l~~~e~~~g~rLaCq~~~~~d~~ie~~  125 (409)
T PRK05464         46 KTITVPAGGKLLGALASNGIFLSSACGGGGSCGQCRVKVKEGGGDILPTELSHISKREAKEGWRLSCQVKVKQDMKIEVP  125 (409)
T ss_pred             EEEEECCCchHHHHHHHcCCCcccCCCCccEeCCCEEEEecCCcCCChhhhhhcCHhhccCCcEEEeeCEECCCEEEEEC
Confidence            345667776  9999999999999999 59999999999999876543  356888889999999999999999999987


Q ss_pred             C
Q 045945          117 K  117 (122)
Q Consensus       117 ~  117 (122)
                      .
T Consensus       126 ~  126 (409)
T PRK05464        126 E  126 (409)
T ss_pred             c
Confidence            3

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=99.49  E-value=2.9e-14  Score=118.08  Aligned_cols=75  Identities=19%  Similarity=0.332  Sum_probs=64.9

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK  117 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~  117 (122)
                      .+.+++|+  |++++++|+++|+.|+ .|.||+|+++|++|.+....  ...|+++++++|++|+||+++.+|++|+++.
T Consensus        43 ~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~G~~~~~~~~~~~L~~~~~~~g~rLaCq~~~~~d~~i~~~~  122 (405)
T TIGR01941        43 SITVPAGGKLLNTLASNGIFISSACGGGGTCGQCRVRVVEGGGEILPTELSHFSKREAKEGWRLSCQVKVKQDMSIEIPE  122 (405)
T ss_pred             EEEECCCChHHHHHHHcCCCCcccCCCccEeCCCEEEEccCCcCCChhhhhhcCHhHhcCCcEEEeeCEECCCEEEEECc
Confidence            45566666  9999999999999999 58999999999999876533  3578888899999999999999999999874

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>PF00111 Fer2: 2Fe-2S iron-sulfur cluster binding domain; InterPro: IPR001041 The ferredoxin protein family are electron carrier proteins with an iron-sulphur cofactor that act in a wide variety of metabolic reactions

Probab=99.47  E-value=5e-14  Score=91.52  Aligned_cols=57  Identities=33%  Similarity=0.661  Sum_probs=49.2

Q ss_pred             HHHHHHc-CCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCe-EEeeceEEC
Q 045945           51 FKVSAMA-VYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGY-VLTCIAYPK  108 (122)
Q Consensus        51 L~a~~~~-Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~-~LaCqs~~~  108 (122)
                      |++++++ |++++|+|+.|.||+|+++|++|++ +.....++++++++++ +|+||++|+
T Consensus        20 l~~~~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~-~~~~~~~~~~~~~~~~~rLaCq~~~t   78 (78)
T PF00111_consen   20 LDALERAGGIGIPYSCGGGGCGTCRVRVLEGEV-QSNETFLEDEELAEGGIRLACQTRVT   78 (78)
T ss_dssp             HHHHHHTTTTTSTTSSSSSSSSTTEEEEEESEE-ETTTSSSHHHHHHTTEEEEGGGSEES
T ss_pred             HHHHHHcCCCCcccCCCCCccCCcEEEEeeCcc-cCCcccCCHHHHHcCCCcCCcEEEeC
Confidence            8899999 9999999999999999999999999 4444667777777776 699999985

Ferredoxins can be divided into several subgroups depending upon the physiological nature of the iron-sulphur cluster(s) and according to sequence similarities. This entry represents members of the 2Fe-2S ferredoxin family that have a general core structure consisting of beta(2)-alpha-beta(2), which includes putidaredoxin and terpredoxin, and adrenodoxin [, , , ]. They are proteins of around one hundred amino acids with four conserved cysteine residues to which the 2Fe-2S cluster is ligated. This conserved region is also found as a domain in various metabolic enzymes and in multidomain proteins, such as aldehyde oxidoreductase (N-terminal), xanthine oxidase (N-terminal), phthalate dioxygenase reductase (C-terminal), succinate dehydrogenase iron-sulphur protein (N-terminal), and methane monooxygenase reductase (N-terminal).; GO: 0009055 electron carrier activity, 0051536 iron-sulfur cluster binding; PDB: 3M9S_C 2FUG_L 3IAS_L 2YBB_3 3IAM_3 3I9V_3 1JQ4_A 1DOX_A 1DOY_A 2KAJ_A ....

>PLN02593 adrenodoxin-like ferredoxin protein

Probab=99.36  E-value=3.8e-13  Score=95.39  Aligned_cols=74  Identities=18%  Similarity=0.264  Sum_probs=56.9

Q ss_pred             CCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCC-------CCCCCC-hhcccCCeEEeeceEECC---Ce
Q 045945           46 LKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQS-------DGSFLD-DNQMEKGYVLTCIAYPKS---DC  111 (122)
Q Consensus        46 ~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~-------~~~~Ls-~~e~~~g~~LaCqs~~~s---dl  111 (122)
                      ++.|+  |++++++|+++++.|+ .|.||+|+++|++++....       +...|+ ..+..+++||+||..+.+   ++
T Consensus        17 ~~~G~tLl~a~~~~gi~i~~~CgG~g~C~tC~V~V~~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaCQ~~v~~~~~~~   96 (117)
T PLN02593         17 APVGMSLLEAAHENDIELEGACEGSLACSTCHVIVMDEKVYNKLPEPTDEENDMLDLAFGLTETSRLGCQVIAKPELDGM   96 (117)
T ss_pred             ECCCCcHHHHHHHcCCCCCccCCCcceeCCCEEEEecCccccCCCCCChHHHHHHhcccCCCCCeEecceeEeecCCCCE
Confidence            34454  8999999999999999 7999999999976543321       113455 345677999999999984   68


Q ss_pred             EEEecCCC
Q 045945          112 VIYTHKES  119 (122)
Q Consensus       112 ~I~l~~~~  119 (122)
                      +|++++.+
T Consensus        97 ~v~ip~~~  104 (117)
T PLN02593         97 RLALPAAT  104 (117)
T ss_pred             EEEcCchh
Confidence            99998765

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=99.27  E-value=4.5e-12  Score=102.99  Aligned_cols=77  Identities=18%  Similarity=0.305  Sum_probs=66.3

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTH  116 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~  116 (122)
                      +++.++.|.  |.++..+||.|++.|+ .|.||.|+|+|.+|.-+..+  ...+|..+.++||||+||..++.|+.|+++
T Consensus        47 ~~~t~~aG~kLL~~L~~~gifi~SaCGGggsC~QCkv~v~~ggge~LpTe~sh~skrea~eG~RLsCQ~~Vk~dm~levp  126 (410)
T COG2871          47 KTKTVPAGGKLLGALASSGIFISSACGGGGSCGQCKVRVKKGGGEILPTELSHISKREAKEGWRLSCQVNVKHDMDLEVP  126 (410)
T ss_pred             hceecCCchhHHHHHHhCCcccccCCCCCccccccEEEEecCCCccCcchhhhhhhhhhhccceEEEEecccccceeech
Confidence            445566665  8889999999999998 89999999999998766543  367888999999999999999999999998


Q ss_pred             CC
Q 045945          117 KE  118 (122)
Q Consensus       117 ~~  118 (122)
                      ++
T Consensus       127 Ee  128 (410)
T COG2871         127 EE  128 (410)
T ss_pred             HH
Confidence            75

>PTZ00490 Ferredoxin superfamily; Provisional

Probab=99.22  E-value=1.2e-11  Score=90.87  Aligned_cols=78  Identities=12%  Similarity=0.144  Sum_probs=61.3

Q ss_pred             HHcCCCCch--HHHHHH-cCCCcCCCCC-CcccCCCeeeeeeccccCCC------CCCCChh-cccCCeEEeeceEECC-
Q 045945           42 KAFGLKSSS--FKVSAM-AVYKLPYSCR-AGACSTCAGLMVSGSVDQSD------GSFLDDN-QMEKGYVLTCIAYPKS-  109 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~-~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~------~~~Ls~~-e~~~g~~LaCqs~~~s-  109 (122)
                      +++.++.|.  ++++.. +++++++.|+ .|.||+|+|+|.+|..+...      ...|+.. +..+++||+||..+.. 
T Consensus        48 ~~v~~~~G~sLLeal~~~~~i~i~~~CGG~g~CgtC~V~V~~g~~~~l~~~~~~E~~~L~~~~~~~~gsRLaCQi~v~~~  127 (143)
T PTZ00490         48 CDVEVPVGMSLMHALRDVAKLDVEGTCNGCMQCATCHVYLSAASFKKLGGPSEEEEDVLAKALDVKETSRLACQVDLTPE  127 (143)
T ss_pred             EEEEECCCccHHHHHHHcCCCCccccCCCCCEeCCCEEEECCCccccCCCCChHHHHHhhccccCCCCcEEeeeEEEecC
Confidence            355667776  888888 4799999998 99999999999987544332      2456655 6788999999999986 


Q ss_pred             --CeEEEecCCC
Q 045945          110 --DCVIYTHKES  119 (122)
Q Consensus       110 --dl~I~l~~~~  119 (122)
                        +++|++++.+
T Consensus       128 ldgl~V~vp~~~  139 (143)
T PTZ00490        128 MDGLEVELPSYV  139 (143)
T ss_pred             CCCEEEEeCccc
Confidence              4699998765

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=99.07  E-value=7.5e-11  Score=101.00  Aligned_cols=75  Identities=23%  Similarity=0.411  Sum_probs=60.6

Q ss_pred             CCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCC-CCCChhcccCCeEEeeceEECCCeEEEecCCCCCC
Q 045945           47 KSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDG-SFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESELN  122 (122)
Q Consensus        47 ~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~-~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~~~  122 (122)
                      +++.  |+++++.|+-|.+.|+ +|+||.|++.|.+|.....+. ++ ..-.+..||+|+||++..+|++|.+|+++.||
T Consensus        15 ~~g~~il~aar~~gv~i~s~cggk~~cgkc~v~v~~g~~~i~s~~dh-~k~~~~~g~rlac~~~v~gd~~i~ip~es~l~   93 (614)
T COG3894          15 DEGTTILDAARRLGVYIRSVCGGKGTCGKCQVVVQEGNHKIVSSTDH-EKYLRERGYRLACQAQVLGDLVIFIPPESRLE   93 (614)
T ss_pred             CCCchHHHHHHhhCceEeeecCCCccccceEEEEEeCCceeccchhH-HHHHHhhceeeeeehhhcCceEEEcCchhhHH
Confidence            4444  9999999999999998 999999999999998654331 11 11223459999999999999999999998765

>PRK08345 cytochrome-c3 hydrogenase subunit gamma; Provisional

Probab=98.39  E-value=1.6e-07  Score=74.66  Aligned_cols=54  Identities=13%  Similarity=0.258  Sum_probs=45.4

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeec
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      .+.++|+|||.+||+  ++.+++.|+++++++.+    +.-.-.|+.|.||.|.++...|
T Consensus       211 ~~~~vyiCGP~~m~~~v~~~L~~~Gv~~~~i~~~----l~~~m~cg~g~c~~c~~~~~~~  266 (289)
T PRK08345        211 KNTYAAICGPPVMYKFVFKELINRGYRPERIYVT----LERRMRCGIGKCGHCIVGTSTS  266 (289)
T ss_pred             cccEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE----ehhcccccCcccCCCccCCCCc
Confidence            457899999999999  88889999999987654    3356789999999999997555

>cd06221 sulfite_reductase_like Anaerobic sulfite reductase contains an FAD and NADPH binding module with structural similarity to ferredoxin reductase and sequence similarity to dihydroorotate dehydrogenases

Probab=98.36  E-value=1.7e-07  Score=73.02  Aligned_cols=50  Identities=18%  Similarity=0.297  Sum_probs=43.9

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeee
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGL   76 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~   76 (122)
                      .+.++|+|||.+|++  .+++++.|++++++|+..    ...--|+.|.||+|++.
T Consensus       189 ~~~~vyicGp~~mv~~~~~~L~~~Gv~~~~i~~~~----~~~~~~~~g~c~~c~~~  240 (253)
T cd06221         189 DNTVAIVCGPPIMMRFVAKELLKLGVPEEQIWVSL----ERRMKCGVGKCGHCQIG  240 (253)
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEeh----hhccccCCccccCcccC
Confidence            568999999999999  888899999999987765    45567999999999987

Clostridium pasteurianum inducible dissimilatory type sulfite reductase is linked to ferredoxin and reduces NH2OH and SeO3 at a lesser rate than it's normal substate SO3(2-). Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+.

>PRK08221 anaerobic sulfite reductase subunit B; Provisional

Probab=98.33  E-value=2e-07  Score=73.18  Aligned_cols=50  Identities=22%  Similarity=0.301  Sum_probs=43.2

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeee
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGL   76 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~   76 (122)
                      .+.++|+|||.+||+  ++.+++.|++++++++.    ..-.-.|+.|+||+|++.
T Consensus       191 ~~~~vylCGp~~mv~~~~~~L~~~Gv~~~~i~~~----~~~~m~cg~g~c~~c~~~  242 (263)
T PRK08221        191 DNMQVIVVGPPIMMKFTVLEFLKRGIKEENIWVS----YERKMCCGVGKCGHCKID  242 (263)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEE----ecceeEccCcccCCcccC
Confidence            568899999999999  88889999998887665    345678999999999977

>cd06220 DHOD_e_trans_like2 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=98.32  E-value=4.6e-07  Score=69.47  Aligned_cols=50  Identities=16%  Similarity=0.323  Sum_probs=42.0

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeee
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMV   78 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl   78 (122)
                      ....++|+|||.+|++  ++.+++.|+ +.+++.+.+      ..|+.|.||+|.+.+.
T Consensus       165 ~~~~~vyicGp~~m~~~~~~~L~~~g~-~~~i~~e~f------~~cg~g~C~~C~v~~~  216 (233)
T cd06220         165 EEYDAIYVCGPEIMMYKVLEILDERGV-RAQFSLERY------MKCGIGICGSCCIDPT  216 (233)
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHhcCC-cEEEEeccc------ccCcCCCcCccEeccC
Confidence            3446899999999999  888889999 566777754      3899999999999985

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>TIGR02911 sulfite_red_B sulfite reductase, subunit B

Probab=98.18  E-value=6.4e-07  Score=70.28  Aligned_cols=50  Identities=20%  Similarity=0.261  Sum_probs=41.2

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeee
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGL   76 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~   76 (122)
                      .+.++|+|||.+||+  ++.+++.|+++.+++.....    .-.|+.|.||.|++.
T Consensus       189 ~~~~v~lCGp~~mv~~~~~~L~~~Gv~~~~i~~~~~~----~m~cg~g~c~~c~~~  240 (261)
T TIGR02911       189 EEVQAIVVGPPIMMKFTVQELLKKGIKEENIWVSYER----KMCCGVGKCGHCKID  240 (261)
T ss_pred             cceEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEecc----ceeccCcCCCCcccC
Confidence            467899999999999  88889999998886655332    346999999999876

Members of this protein family include the B subunit, one of three subunits, of the anaerobic sulfite reductase of Salmonella, and close homologs from various Clostridum species, where the three-gene neighborhood is preserved. Two such gene clusters are found in Clostridium perfringens, but it may be that these sets of genes correspond to the distinct assimilatory and dissimilatory forms as seen in Clostridium pasteurianum.

>cd06218 DHOD_e_trans FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase

Probab=98.09  E-value=4.3e-06  Score=64.86  Aligned_cols=50  Identities=16%  Similarity=0.312  Sum_probs=41.5

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeee
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVS   79 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~   79 (122)
                      ...++|+|||.+|++  ++++++.|++..       .-+.-+..|+.|.||.|+....+
T Consensus       179 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~-------~~~~~~~~~~~g~c~~c~~~~~~  230 (246)
T cd06218         179 RPDVVYACGPEPMLKAVAELAAERGVPCQ-------VSLEERMACGIGACLGCVVKTKD  230 (246)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHhcCCCEE-------EEecccccCccceecccEEEeec
Confidence            468999999999999  888899898854       22346788999999999998865

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as 3 cofactors: FMN, FAD, and an [2Fe-2S] cluster.

>PRK00054 dihydroorotate dehydrogenase electron transfer subunit; Reviewed

Probab=98.04  E-value=2.3e-06  Score=66.27  Aligned_cols=51  Identities=16%  Similarity=0.274  Sum_probs=38.5

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeec
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      ...++|+|||.+||+  ++.+++.|++ ..+..+      =...|+.|.||+|.+.+..|
T Consensus       180 ~~~~vyvCGp~~m~~~v~~~l~~~Gv~-~~~~~e------~~m~cg~G~C~~C~~~~~~~  232 (250)
T PRK00054        180 EYDAIYSCGPEIMMKKVVEILKEKKVP-AYVSLE------RRMKCGIGACGACVCDTETG  232 (250)
T ss_pred             CCCEEEEeCCHHHHHHHHHHHHHcCCc-EEEEEc------ccccCcCcccCcCCcccCCC
Confidence            346899999999999  7777888883 323322      25699999999999985443

>cd06219 DHOD_e_trans_like1 FAD/NAD binding domain in the electron transfer subunit of dihydroorotate dehydrogenase-like proteins

Probab=98.02  E-value=3.9e-06  Score=65.06  Aligned_cols=49  Identities=12%  Similarity=0.403  Sum_probs=38.5

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeec
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      ...+|+|||.+||+  ++.+++.|++.       ..-+.-.-.|+.|.||.|.++. .|
T Consensus       180 ~~~vyiCGP~~m~~~~~~~l~~~Gv~~-------~~s~e~~m~Cg~G~C~~C~~~~-~~  230 (248)
T cd06219         180 VDLVIAIGPPIMMKAVSELTRPYGIPT-------VVSLNPIMVDGTGMCGACRVTV-GG  230 (248)
T ss_pred             ccEEEEECCHHHHHHHHHHHHHcCCCE-------EEEecccccCccceeeeEEEEe-CC
Confidence            45799999999999  77777777762       1333467789999999999985 44

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD,

>PRK08166 NADH dehydrogenase subunit G; Validated

Probab=97.96  E-value=5.3e-06  Score=74.70  Aligned_cols=63  Identities=17%  Similarity=0.409  Sum_probs=51.9

Q ss_pred             cCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEe
Q 045945           44 FGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYT  115 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l  115 (122)
                      +.+++|+  |++++++||.||+.|.      .|.|+.|+++|++|.+           +...+++++|++.+..+++|+.
T Consensus        11 ~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~v~v~~g~~-----------~~~~~~~~aC~~~v~~gm~v~t   79 (847)
T PRK08166         11 YEVNGADNLLEACLSLGIDIPYFCWHPALGSVGACRQCAVKQYQNPE-----------DTRGRLVMSCMTPATDGTFISI   79 (847)
T ss_pred             EEeCCCCHHHHHHHHcCCCCCccccCCCCCCCCccCCCeEEEeecCc-----------cCCCCcccCcCCCCCCCCEEEe
Confidence            4567777  9999999999999998      6999999999999843           1223578899888888899877


Q ss_pred             cC
Q 045945          116 HK  117 (122)
Q Consensus       116 ~~  117 (122)
                      ..
T Consensus        80 ~~   81 (847)
T PRK08166         80 DD   81 (847)
T ss_pred             CC
Confidence            54

>PRK07569 bidirectional hydrogenase complex protein HoxU; Validated

Probab=97.92  E-value=7e-06  Score=63.88  Aligned_cols=59  Identities=20%  Similarity=0.409  Sum_probs=47.3

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      .+.+++|+  |+++.++|+.+|+.|.      .|.|+.|+|+| +|.               .+.+.+|++.+..+++|.
T Consensus        12 ~~~~~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v-~g~---------------~~~~~aC~t~v~~Gm~v~   75 (234)
T PRK07569         12 LVSAREGETLLEAAREAGIPIPTLCHLDGLSDVGACRLCLVEI-EGS---------------NKLLPACVTPVAEGMVVQ   75 (234)
T ss_pred             EEEeCCCCHHHHHHHHcCCCCCcCcCCCCCCCCCccCCcEEEE-CCC---------------CccccCcCCCCCCCCEEE
Confidence            35667776  9999999999999998      99999999998 331               134568999988888887


Q ss_pred             ecC
Q 045945          115 THK  117 (122)
Q Consensus       115 l~~  117 (122)
                      ...
T Consensus        76 t~~   78 (234)
T PRK07569         76 TNT   78 (234)
T ss_pred             ECC
Confidence            653

>PRK06222 ferredoxin-NADP(+) reductase subunit alpha; Reviewed

Probab=97.84  E-value=1.5e-05  Score=63.18  Aligned_cols=47  Identities=15%  Similarity=0.342  Sum_probs=38.0

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v   77 (122)
                      ...+|+|||.+||+  .+++++.|++       ....+.-.-.|+.|.|+.|.++.
T Consensus       181 ~~~vy~CGP~~M~~~v~~~l~~~gv~-------~~~sle~~M~CG~G~C~~C~v~~  229 (281)
T PRK06222        181 VDRVVAIGPVIMMKFVAELTKPYGIK-------TIVSLNPIMVDGTGMCGACRVTV  229 (281)
T ss_pred             CcEEEEECCHHHHHHHHHHHHhcCCC-------EEEECcccccCcccccceeEEEE
Confidence            35799999999999  7778888876       23345567789999999999975

>PRK06259 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Provisional

Probab=97.81  E-value=1.7e-05  Score=67.12  Aligned_cols=54  Identities=28%  Similarity=0.478  Sum_probs=42.7

Q ss_pred             CCCch--HHHHHH------cCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945           46 LKSSS--FKVSAM------AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK  117 (122)
Q Consensus        46 ~~~~~--L~a~~~------~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~  117 (122)
                      +++++  |+++.+      .++.++++|+.|.||+|+++| +|.                 .+|+|++++.++++|+...
T Consensus        27 ~~~~~tvl~al~~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~-----------------~~laC~~~~~~~~~i~~~~   88 (486)
T PRK06259         27 VKEGMTVLDALEYINKTYDANIAFRSSCRAGQCGSCAVTI-NGE-----------------PVLACKTEVEDGMIIEPLD   88 (486)
T ss_pred             CCCCChHHHHHHHhchhcCCCceecCCCCCCCCCCCEEEE-CCe-----------------EecccccCCCCCCEEEecC
Confidence            33555  677763      677889999999999999995 664                 3789999999999888653

>cd06192 DHOD_e_trans_like FAD/NAD binding domain (electron transfer subunit) of dihydroorotate dehydrogenase-like proteins

Probab=97.62  E-value=3.1e-05  Score=59.51  Aligned_cols=50  Identities=12%  Similarity=0.212  Sum_probs=37.0

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeee
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMV   78 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl   78 (122)
                      ...+|+|||.+||+  ++.+++.+ +..++.    .-++=.-.|+.|.||.|.+...
T Consensus       178 ~~~v~icGp~~mv~~~~~~l~~~g-~~~~~~----~s~~~~m~Cg~G~C~~C~~~~~  229 (243)
T cd06192         178 VDRIIVAGSDIMMKAVVEALDEWL-QLIKAS----VSNNSPMCCGIGICGACTIETK  229 (243)
T ss_pred             CCEEEEECCHHHHHHHHHHHHhhc-CCceEE----EECCccccCccccccceEEEeC
Confidence            46899999999999  77777766 322222    2234567899999999999753

Dihydroorotate dehydrogenases (DHODs) catalyze the only redox reaction in pyrimidine de novo biosynthesis. They catalyze the oxidation of (S)-dihydroorotate to orotate coupled with the reduction of NAD+. In L. lactis, DHOD B (encoded by pyrDa) is co-expressed with pyrK and both gene products are required for full activity, as well as NAD binding. NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (formi

>PF13510 Fer2_4: 2Fe-2S iron-sulfur cluster binding domain; PDB: 1Y56_A 3ADA_A 1VRQ_A 1X31_A 3AD9_A 3AD8_A 3AD7_A 2GAG_A 2GAH_A

Probab=97.34  E-value=6.6e-05  Score=49.87  Aligned_cols=56  Identities=20%  Similarity=0.335  Sum_probs=35.1

Q ss_pred             cCCCCch--HHHHHHcCCCcCCCCCC----------cccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCe
Q 045945           44 FGLKSSS--FKVSAMAVYKLPYSCRA----------GACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDC  111 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~Gi~i~~~Cr~----------G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl  111 (122)
                      +.+++|+  |+++..+|+.+|+.|..          |.|+.|.|+|- |                ...+.||+..+...+
T Consensus        13 v~~~~G~til~al~~~gi~ip~~c~~~~~r~~~~~~g~C~~C~Vev~-g----------------~~~v~AC~t~v~~GM   75 (82)
T PF13510_consen   13 VEVPPGETILEALLAAGIDIPRLCYHGRPRGGLCPIGSCRLCLVEVD-G----------------EPNVRACSTPVEDGM   75 (82)
T ss_dssp             EEEEET-BHHHHHHHTT--B-EETTTS-EEBSSSSSTT-SS-EEEES-S----------------EEEEETTT-B--TTE
T ss_pred             EEEcCCCHHHHHHHHCCCeEEEeeeccCcccccCCccccceEEEEEC-C----------------CcceEcccCCCcCCc
Confidence            3445555  89999999999999987          99999999883 1                123789999999998


Q ss_pred             EEEec
Q 045945          112 VIYTH  116 (122)
Q Consensus       112 ~I~l~  116 (122)
                      +|...
T Consensus        76 ~V~T~   80 (82)
T PF13510_consen   76 VVETQ   80 (82)
T ss_dssp             EEE--
T ss_pred             EEEEe
Confidence            88653

>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional

Probab=97.25  E-value=0.00029  Score=64.76  Aligned_cols=46  Identities=17%  Similarity=0.333  Sum_probs=36.3

Q ss_pred             CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945           25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v   77 (122)
                      ..+|+|||.+||+  .++++..|++.-       .-+.-...|+-|.||.|.+++
T Consensus       848 ~~Vy~CGP~~Mmkav~~~l~~~Gv~~~-------vSlE~~M~CG~G~C~~C~v~~  895 (944)
T PRK12779        848 AEVIAIGPPLMMRAVSDLTKPYGVKTV-------ASLNSIMVDATGMCGACMVPV  895 (944)
T ss_pred             cEEEEECCHHHHHHHHHHHHHcCCCeE-------EeecccccCCCeeeCeeeeee
Confidence            5799999999999  778888888751       112234689999999999985

>cd06189 flavin_oxioreductase NAD(P)H dependent flavin oxidoreductases use flavin as a substrate in mediating electron transfer from iron complexes or iron proteins

Probab=97.22  E-value=0.00017  Score=54.58  Aligned_cols=33  Identities=18%  Similarity=-0.002  Sum_probs=29.1

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .+.++|+|||.+||+  ++++++.|++++++|.+.
T Consensus       189 ~~~~v~vCGp~~m~~~~~~~l~~~G~~~~~i~~e~  223 (224)
T cd06189         189 SDFDVYACGSPEMVYAARDDFVEKGLPEENFFSDA  223 (224)
T ss_pred             cccEEEEECCHHHHHHHHHHHHHcCCCHHHcccCC
Confidence            468899999999999  888999999999888653

Structurally similar to ferredoxin reductases, but with only 15% sequence identity, flavin reductases reduce FAD, FMN, or riboflavin via NAD(P)H. Flavin is used as a substrate, rather than a tightly bound prosthetic group as in flavoenzymes; weaker binding is due to the absence of a binding site for the AMP moeity of FAD.

>PRK05464 Na(+)-translocating NADH-quinone reductase subunit F; Provisional

Probab=97.21  E-value=0.00013  Score=60.63  Aligned_cols=37  Identities=8%  Similarity=0.058  Sum_probs=32.1

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcC
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAV   58 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~G   58 (122)
                      ..+.++|+|||.+||+  ++.+++.|++++++|.+.+.|
T Consensus       371 ~~~~~vyiCGP~~m~~av~~~L~~~Gv~~~~I~~E~F~~  409 (409)
T PRK05464        371 PEDCEYYMCGPPMMNAAVIKMLKDLGVEDENILLDDFGG  409 (409)
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEEEcccCC
Confidence            3467999999999999  888899999999998887655

>cd06188 NADH_quinone_reductase Na+-translocating NADH:quinone oxidoreductase (Na+-NQR) FAD/NADH binding domain

Probab=97.21  E-value=0.00015  Score=57.07  Aligned_cols=33  Identities=9%  Similarity=0.055  Sum_probs=28.7

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .+.++|+|||.+||+  ++++++.|++++++|.+.
T Consensus       248 ~~~~vyiCGP~~m~~~~~~~l~~~Gv~~~~i~~e~  282 (283)
T cd06188         248 EDIEFYLCGPPPMNSAVIKMLDDLGVPRENIAFDD  282 (283)
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHcCCCHHHeeccC
Confidence            457899999999999  888899999999887653

(Na+-NQR) provides a means of storing redox reaction energy via the transmembrane translocation of Na2+ ions. The C-terminal domain resembles ferredoxin:NADP+ oxidoreductase, and has NADH and FAD binding sites. (Na+-NQR) is distinct from H+-translocating NADH:quinone oxidoreductases and noncoupled NADH:quinone oxidoreductases. The NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal domain of this group typically contains an iron-sulfur cluster binding domain.

>PRK12778 putative bifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta; Provisional

Probab=97.18  E-value=0.00032  Score=62.47  Aligned_cols=46  Identities=13%  Similarity=0.319  Sum_probs=35.2

Q ss_pred             CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945           25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v   77 (122)
                      .++|+|||.+||+  .++++..|++.       ..-+.-.-.|+.|.||.|.++.
T Consensus       182 ~~vy~CGP~~M~~~v~~~l~~~gv~~-------~~Sle~~M~CG~G~C~~C~v~~  229 (752)
T PRK12778        182 DKVFAIGPAIMMKFVCLLTKKYGIPT-------IVSLNTIMVDGTGMCGACRVTV  229 (752)
T ss_pred             CEEEEECCHHHHHHHHHHHHHcCCCE-------EEeCcccccCcccccCcceeEe
Confidence            5799999999999  77777666652       1222346789999999999964

>cd06198 FNR_like_3 NAD(P) binding domain of ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) domain, which varies in orientation with respect to the NAD(P) binding domain

Probab=97.18  E-value=0.00031  Score=52.76  Aligned_cols=36  Identities=11%  Similarity=0.122  Sum_probs=31.1

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      +..+..+|+|||.+||+  ++.++..|+++++++.+.+
T Consensus       178 ~~~~~~vyicGp~~m~~~v~~~l~~~Gv~~~~I~~E~f  215 (216)
T cd06198         178 DLADADVWFCGPPGMADALEKGLRALGVPARRFHYERF  215 (216)
T ss_pred             CcCCCeEEEECcHHHHHHHHHHHHHcCCChHhcchhhc
Confidence            44568999999999999  8888999999999887754

The N-terminal domain may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>cd06211 phenol_2-monooxygenase_like Phenol 2-monooxygenase (phenol hydroxylase) is a flavoprotein monooxygenase, able to use molecular oxygen as a substrate in the microbial degredation of phenol

Probab=97.16  E-value=0.00022  Score=54.47  Aligned_cols=33  Identities=9%  Similarity=-0.022  Sum_probs=29.1

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .+.++|+|||.+||+  ++++++.|++++++|.+.
T Consensus       203 ~~~~vyvCGp~~m~~~~~~~L~~~Gv~~~~i~~e~  237 (238)
T cd06211         203 RGHKAYLCGPPPMIDACIKTLMQGRLFERDIYYEK  237 (238)
T ss_pred             ccCEEEEECCHHHHHHHHHHHHHcCCCHHHccccC
Confidence            467899999999999  889999999999888653

This protein is encoded by a single gene and uses a tightly bound FAD cofactor in the NAD(P)H dependent conversion of phenol and O2 to catechol and H2O. This group is related to the NAD binding ferredoxin reductases.

>PRK12775 putative trifunctional 2-polyprenylphenol hydroxylase/glutamate synthase subunit beta/ferritin domain-containing protein; Provisional

Probab=97.15  E-value=0.00032  Score=64.77  Aligned_cols=46  Identities=17%  Similarity=0.396  Sum_probs=36.4

Q ss_pred             CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945           25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v   77 (122)
                      .++|+|||.+||+  .++++..|++       ....+.-...|+.|.||.|++.+
T Consensus       182 d~vy~CGP~~Mm~av~~~~~~~gi~-------~~vSle~~M~cG~G~Cg~C~v~~  229 (1006)
T PRK12775        182 DLVVAIGPLPMMNACVETTRPFGVK-------TMVSLNAIMVDGTGMCGSCRVTV  229 (1006)
T ss_pred             CEEEEECCHHHHHHHHHHHHHCCCc-------EEECChhheeCccceeCCCEeee
Confidence            4799999999999  7778888875       11233455789999999999975

>cd06196 FNR_like_1 Ferredoxin reductase-like proteins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which varies in orientation with respect to the NAD(P) binding domain

Probab=97.12  E-value=0.00025  Score=53.27  Aligned_cols=32  Identities=16%  Similarity=0.155  Sum_probs=27.5

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKV   53 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a   53 (122)
                      ....++|+|||.+||+  ++++++.|+++++++.
T Consensus       184 ~~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~i~~  217 (218)
T cd06196         184 DFNQHFYVCGPPPMEEAINGALKELGVPEDSIVF  217 (218)
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEec
Confidence            3357899999999999  8999999999987664

The N-terminal region may contain a flavin prosthetic group (as in flavoenzymes) or use flavin as a substrate. Ferredoxin is reduced in the final stage of photosystem I. The flavoprotein Ferredoxin-NADP+ reductase transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) which then transfers a hydride ion to convert NADP+ to NADPH.

>COG1018 Hmp Flavodoxin reductases (ferredoxin-NADPH reductases) family 1 [Energy production and conversion]

Probab=97.11  E-value=0.00021  Score=56.98  Aligned_cols=40  Identities=18%  Similarity=0.328  Sum_probs=33.9

Q ss_pred             cCCCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcC
Q 045945           19 TAPTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAV   58 (122)
Q Consensus        19 ~~~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~G   58 (122)
                      .+|+.++++|+|||.+||+  ...+.++|++.+++|.+.+..
T Consensus       191 ~~~~~~r~~y~CGp~~fm~av~~~l~~~g~~~~~vh~E~F~~  232 (266)
T COG1018         191 AAPDGGREVYLCGPGPFMQAVRLALEALGVPDDRVHLEGFGP  232 (266)
T ss_pred             cCCCCCCEEEEECCHHHHHHHHHHHHHcCCChhcEEEeecCC
Confidence            4565569999999999999  888889999999998886653

>TIGR01941 nqrF NADH:ubiquinone oxidoreductase, Na(+)-translocating, F subunit

Probab=97.11  E-value=0.0002  Score=59.49  Aligned_cols=36  Identities=6%  Similarity=0.027  Sum_probs=31.6

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAV   58 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~G   58 (122)
                      .+.++|+|||.+||+  ++++++.|++++++|.+.+.|
T Consensus       368 ~~~~vylCGP~~m~~av~~~L~~~Gv~~~~I~~E~F~~  405 (405)
T TIGR01941       368 EDCEFYMCGPPMMNAAVIKMLEDLGVERENILLDDFGG  405 (405)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeccCC
Confidence            467899999999999  888899999999988877654

This model represents the NqrF subunit of the six-protein, Na(+)-pumping NADH-quinone reductase of a number of marine and pathogenic Gram-negative bacteria. This oxidoreductase complex functions primarily as a sodium ion pump.

>cd06217 FNR_iron_sulfur_binding_3 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=97.09  E-value=0.00027  Score=53.45  Aligned_cols=34  Identities=15%  Similarity=0.192  Sum_probs=29.4

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      ..+.++|+|||.+|++  ++.+++.|+++++++.+.
T Consensus       199 ~~~~~v~icGp~~m~~~v~~~l~~~Gv~~~~i~~E~  234 (235)
T cd06217         199 LAGRRVYVCGPPAFVEAATRLLLELGVPRDRIRTEA  234 (235)
T ss_pred             ccCCEEEEECCHHHHHHHHHHHHHcCCCHHHEeecc
Confidence            3568999999999999  888999999998877653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form

>PRK05802 hypothetical protein; Provisional

Probab=97.09  E-value=0.00041  Score=56.38  Aligned_cols=46  Identities=13%  Similarity=0.195  Sum_probs=32.2

Q ss_pred             CeeEEcCChhhhh--HhHHHHc--CCCCchHHHHHHcCCCcCCCCCCcccCCCeeee
Q 045945           25 KFPLVKSPGSLVS--RSVSKAF--GLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        25 ~~~YvCGP~~fm~--~~~~~~~--~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~v   77 (122)
                      ..+|+|||+.||.  .+++++.  +++-       ..-+.-.-.|+.|.||.|.++.
T Consensus       255 ~~vy~CGP~~M~k~v~~~l~~~~~~i~~-------~~Sle~~M~CG~G~Cg~C~v~~  304 (320)
T PRK05802        255 NLIHCGGSDILHYKIIEYLDKLNEKIKL-------SCSNNAKMCCGEGICGACTVRY  304 (320)
T ss_pred             CEEEEECCHHHHHHHHHHHhhhcCCceE-------EEeCCCeeeCcCccCCeeEEEE
Confidence            5799999999999  6655542  2210       0112236689999999999995

>PRK08051 fre FMN reductase; Validated

Probab=97.08  E-value=0.00028  Score=54.02  Aligned_cols=34  Identities=9%  Similarity=0.003  Sum_probs=29.7

Q ss_pred             CCCeeEEcCChhhhh--HhHH-HHcCCCCchHHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVS-KAFGLKSSSFKVSAM   56 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~-~~~~~~~~~L~a~~~   56 (122)
                      .+.++|+|||.+||+  ++++ ++.|+++++++.+.+
T Consensus       193 ~~~~vyicGp~~m~~~v~~~l~~~~G~~~~~i~~e~f  229 (232)
T PRK08051        193 AEYDIYIAGRFEMAKIARELFCRERGAREEHLFGDAF  229 (232)
T ss_pred             ccCEEEEECCHHHHHHHHHHHHHHcCCCHHHeecccc
Confidence            457899999999999  8888 899999999887754

>cd06212 monooxygenase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=97.05  E-value=0.0003  Score=53.35  Aligned_cols=34  Identities=9%  Similarity=0.036  Sum_probs=29.6

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      .+.++|+|||.+||+  ++.+++.|++++++|.+.+
T Consensus       196 ~~~~v~~CGp~~~~~~v~~~l~~~G~~~~~i~~e~f  231 (232)
T cd06212         196 AGCDVYLCGPPPMIDAALPVLEMSGVPPDQIFYDKF  231 (232)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence            357899999999999  8889999999998887643

These flavoprotein monooxygenases use molecular oxygen as a substrate and require reduced FAD. One atom of oxygen is incorportated into the aromatic compond, while the other is used to form a molecule of water. In contrast dioxygenases add both atoms of oxygen to the substrate.

>cd06194 FNR_N-term_Iron_sulfur_binding Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an N-terminal Iron-Sulfur binding cluster domain

Probab=97.05  E-value=0.00032  Score=52.81  Aligned_cols=35  Identities=17%  Similarity=0.078  Sum_probs=29.9

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      +....++|+|||.+||+  ++.+++.|+++++++.+.
T Consensus       184 ~~~~~~vyicGp~~m~~~~~~~L~~~Gv~~~~i~~e~  220 (222)
T cd06194         184 LTRDDVVYLCGAPSMVNAVRRRAFLAGAPMKRIYADP  220 (222)
T ss_pred             ccCCCEEEEeCCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence            34568999999999999  888899999999887653

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second e

>cd00322 FNR_like Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I

Probab=97.01  E-value=0.00042  Score=51.50  Aligned_cols=33  Identities=9%  Similarity=0.205  Sum_probs=28.0

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKV   53 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a   53 (122)
                      +..+..+|+|||.+||+  ++.+.+.|+++++++.
T Consensus       188 ~~~~~~~yvCGp~~m~~~~~~~L~~~gv~~~~i~~  222 (223)
T cd00322         188 DDSGALVYICGPPAMAKAVREALVSLGVPEERIHT  222 (223)
T ss_pred             cccCCEEEEECCHHHHHHHHHHHHHcCCCHHHccc
Confidence            34568999999999999  8888999999887664

FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation in many organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal moeity may contain a flavin prosthetic group (as in

>cd06191 FNR_iron_sulfur_binding Iron-sulfur binding Ferredoxin Reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with a C-terminal iron-sulfur binding cluster domain

Probab=96.97  E-value=0.00038  Score=52.77  Aligned_cols=32  Identities=9%  Similarity=0.301  Sum_probs=28.2

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      ..++|+|||.+||+  ++.+++.|+++++++.+.
T Consensus       197 ~~~vyicGp~~mv~~~~~~l~~~G~~~~~i~~E~  230 (231)
T cd06191         197 EREAFICGPAGMMDAVETALKELGMPPERIHTER  230 (231)
T ss_pred             CCeEEEECCHHHHHHHHHHHHHcCCCHHHeeecc
Confidence            57999999999999  888899999999887653

FNR was intially identified as a chloroplast reductase activity catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methnae assimilation in a variety of organisms. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which vary in

>cd06215 FNR_iron_sulfur_binding_1 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=96.97  E-value=0.00035  Score=52.67  Aligned_cols=32  Identities=19%  Similarity=0.373  Sum_probs=27.8

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS   54 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~   54 (122)
                      .+.++|+|||.+||+  ++.+++.|+++++++.+
T Consensus       196 ~~~~v~icGp~~m~~~~~~~l~~~gv~~~~i~~e  229 (231)
T cd06215         196 KERTVFVCGPAGFMKAVKSLLAELGFPMSRFHQE  229 (231)
T ss_pred             cCCeEEEECCHHHHHHHHHHHHHcCCCHHHeeee
Confidence            347999999999999  88889999998887754

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal portion of the FAD/NAD binding domain contains most of the NADP(H) binding residues and the N-terminal sub-domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. In this ferredoxin like sub-group, the FAD/NAD sub-domains is typically fused to a C-terminal iron-sulfur binding domain. Iron-sulfur pr

>cd06209 BenDO_FAD_NAD Benzoate dioxygenase reductase (BenDO) FAD/NAD binding domain

Probab=96.93  E-value=0.00044  Score=52.32  Aligned_cols=35  Identities=17%  Similarity=0.181  Sum_probs=29.7

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      ..+.++|+|||.+||+  ++.+++.|+++++++.+.+
T Consensus       191 ~~~~~v~icGp~~m~~~~~~~l~~~G~~~~~i~~E~F  227 (228)
T cd06209         191 DGDVDVYLCGPPPMVDAVRSWLDEQGIEPANFYYEKF  227 (228)
T ss_pred             CCCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEeeecc
Confidence            3457899999999999  8888999999998887643

Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. As a Class I bacterial dioxygenases, benzoate dioxygenase like proteins combine an [2Fe-2S] cluster containing N-terminal ferredoxin at the end fused to an FAD/NADP(P) domain. In dioxygenase FAD/NAD(P) binding domain, the reductase transfers 2 electrons from NAD(P)H to the oxygenase which insert into an aromatic substrate, an initial step in microbial aerobic degradation of aromatic rings. Flavin oxidoreductases use flavins as substrates, unlike flavoenzymes which have a flavin prosthetic group.

>PRK13552 frdB fumarate reductase iron-sulfur subunit; Provisional

Probab=96.92  E-value=0.00053  Score=53.94  Aligned_cols=24  Identities=33%  Similarity=0.916  Sum_probs=20.3

Q ss_pred             cCCCcCCCCCCcccCCCeeeeeecc
Q 045945           57 AVYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      .-+.+.++||.|+||+|.++| .|.
T Consensus        49 ~sL~fr~sCr~giCGsCam~I-NG~   72 (239)
T PRK13552         49 PSLQFDFVCRAGICGSCAMVI-NGR   72 (239)
T ss_pred             CCeeEeccCCCCCCCCceeEE-CCe
Confidence            457889999999999999987 454

>cd06195 FNR1 Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin

Probab=96.89  E-value=0.00041  Score=53.04  Aligned_cols=32  Identities=9%  Similarity=0.214  Sum_probs=27.3

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCC------chHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKS------SSFKVS   54 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~------~~L~a~   54 (122)
                      ...++|+|||.+||+  ++.+++.|+++      +++|.|
T Consensus       200 ~~~~vyiCGp~~m~~~~~~~l~~~G~~~~~~~~~~~~~~E  239 (241)
T cd06195         200 ETSHVMLCGNPQMIDDTQELLKEKGFSKNHRRKPGNITVE  239 (241)
T ss_pred             ccCEEEEeCCHHHHHHHHHHHHHcCCCccccCCCceEEEe
Confidence            568999999999999  88889999998      666654

Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2 which then transfers two electrons and a proton to NADP+ to form NADPH.

>PRK05713 hypothetical protein; Provisional

Probab=96.89  E-value=0.00048  Score=55.22  Aligned_cols=34  Identities=15%  Similarity=0.131  Sum_probs=29.5

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      ...++|+|||.+||+  .+++++.|++++++|.+.+
T Consensus       273 ~~~~vyiCGp~~mv~~~~~~L~~~Gv~~~~i~~e~F  308 (312)
T PRK05713        273 RQTMALLCGSPASVERFARRLYLAGLPRNQLLADVF  308 (312)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence            347899999999999  8888999999999887754

>cd06187 O2ase_reductase_like The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons using oxygen as the oxidant

Probab=96.88  E-value=0.00052  Score=51.52  Aligned_cols=32  Identities=13%  Similarity=0.059  Sum_probs=28.1

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS   54 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~   54 (122)
                      .++++|+|||.+||+  ++.+++.|+++++++.+
T Consensus       189 ~~~~v~vcGp~~~~~~v~~~l~~~G~~~~~i~~e  222 (224)
T cd06187         189 ADHDIYICGPPAMVDATVDALLARGAPPERIHFD  222 (224)
T ss_pred             ccCEEEEECCHHHHHHHHHHHHHcCCCHHHeecc
Confidence            468999999999999  88889999999887764

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate, while mono-oxygenases (aka mixed oxygenases) add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06210 MMO_FAD_NAD_binding Methane monooxygenase (MMO) reductase of methanotrophs catalyzes the NADH-dependent hydroxylation of methane to methanol

Probab=96.84  E-value=0.00061  Score=51.74  Aligned_cols=34  Identities=9%  Similarity=0.122  Sum_probs=28.7

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      ...++|+|||.+||+  ++.+++.|++.++++.+.+
T Consensus       200 ~~~~vyicGp~~m~~~~~~~l~~~G~~~~~i~~E~f  235 (236)
T cd06210         200 AKPDIYLCGPPGMVDAAFAAAREAGVPDEQVYLEKF  235 (236)
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHeeeccc
Confidence            346899999999999  8888999999888876643

This multicomponent enzyme mediates electron transfer via a hydroxylase (MMOH), a coupling protein, and a reductase which is comprised of an N-terminal [2Fe-2S] ferredoxin domain, an FAD binding subdomain, and an NADH binding subdomain. Oxygenases oxidize hydrocarbons using dioxygen as the oxidant. Dioxygenases add both atom of oxygen to the substrate, while mono-oxygenases add one atom to the substrate and one atom to water.

>cd06184 flavohem_like_fad_nad_binding FAD_NAD(P)H binding domain of flavohemoglobin

Probab=96.81  E-value=0.00059  Score=52.22  Aligned_cols=37  Identities=14%  Similarity=0.098  Sum_probs=31.7

Q ss_pred             CCCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           20 APTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        20 ~~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      .+..+.++|+|||.+||+  ++.+++.|+++++++.+.+
T Consensus       205 ~~~~~~~v~icGp~~m~~~v~~~l~~~G~~~~~i~~e~f  243 (247)
T cd06184         205 LLPADADFYLCGPVPFMQAVREGLKALGVPAERIHYEVF  243 (247)
T ss_pred             cCCCCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence            345678999999999999  8888999999998887655

Flavohemoglobins have a globin domain containing a B-type heme fused with a ferredoxin reductase-like FAD/NAD-binding domain. Flavohemoglobins detoxify nitric oxide (NO) via an NO dioxygenase reaction. The hemoglobin domain adopts a globin fold with an embedded heme molecule. Flavohemoglobins also have a C-terminal reductase domain with bindiing sites for FAD and NAD(P)H. This domain catalyzes the conversion of NO + O2 + NAD(P)H to NO3- + NAD(P)+. Instead of the oxygen transport function of hemoglobins, flavohemoglobins seem to act in NO dioxygenation and NO signalling.

>PRK11872 antC anthranilate dioxygenase reductase; Provisional

Probab=96.77  E-value=0.00052  Score=55.77  Aligned_cols=34  Identities=9%  Similarity=0.029  Sum_probs=29.6

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHc
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMA   57 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~   57 (122)
                      ..++|+|||.+||+  ++++++.|++++++|.+.+.
T Consensus       301 ~~~vy~CGp~~mv~~~~~~L~~~Gv~~~~i~~E~F~  336 (340)
T PRK11872        301 AFDMYLCGPPPMVEAVKQWLDEQALENYRLYYEKFT  336 (340)
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEeeec
Confidence            46899999999999  88889999999998877543

>PRK13289 bifunctional nitric oxide dioxygenase/dihydropteridine reductase 2; Provisional

Probab=96.74  E-value=0.00068  Score=55.60  Aligned_cols=35  Identities=6%  Similarity=-0.017  Sum_probs=31.0

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMA   57 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~   57 (122)
                      .+.++|+|||.+||+  ++++++.|+++++++.+.+.
T Consensus       357 ~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~I~~E~F~  393 (399)
T PRK13289        357 PDADFYFCGPVPFMQFVAKQLLELGVPEERIHYEFFG  393 (399)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeeccC
Confidence            478999999999999  88889999999998887653

>cd06213 oxygenase_e_transfer_subunit The oxygenase reductase FAD/NADH binding domain acts as part of the multi-component bacterial oxygenases which oxidize hydrocarbons

Probab=96.70  E-value=0.00075  Score=51.10  Aligned_cols=33  Identities=12%  Similarity=0.253  Sum_probs=28.6

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS   54 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~   54 (122)
                      ..+.++|+|||.+||+  ++.+.+.|+++++++.+
T Consensus       191 ~~~~~v~~CGp~~~~~~~~~~l~~~G~~~~~i~~e  225 (227)
T cd06213         191 LAATEAYLCGPPAMIDAAIAVLRALGIAREHIHAD  225 (227)
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHcCCCHHHEecc
Confidence            3467999999999999  88888999999888765

Electron transfer is from NADH via FAD (in the oxygenase reductase) and an [2FE-2S] ferredoxin center (fused to the FAD/NADH domain and/or discrete) to the oxygenase. Dioxygenases add both atoms of oxygen to the substrate while mono-oxygenases add one atom to the substrate and one atom to water. In dioxygenases, Class I enzymes are 2 component, containing a reductase with Rieske type [2Fe-2S] redox centers and an oxygenase. Class II are 3 component, having discrete flavin and ferredoxin proteins and an oxygenase. Class III have 2 [2Fe-2S] centers, one fused to the flavin domain and the other separate.

>cd06185 PDR_like Phthalate dioxygenase reductase (PDR) is an FMN-dependent reductase that mediates electron transfer from NADH to FMN to an iron sulfur cluster

Probab=96.69  E-value=0.00087  Score=49.96  Aligned_cols=33  Identities=15%  Similarity=0.273  Sum_probs=28.7

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .+.++|+|||..|++  ++.+++.|++..+++.+.
T Consensus       175 ~~~~vyicGp~~m~~~~~~~l~~~gv~~~~i~~e~  209 (211)
T cd06185         175 AGTHVYVCGPEGMMDAVRAAAAALGWPEARLHFER  209 (211)
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCChhheEeee
Confidence            467999999999999  888899999998877654

PDR has an an N-terminal ferrredoxin reductase (FNR)-like NAD(H) binding domain and a C-terminal iron-sulfur [2Fe-2S] cluster domain. Although structurally homologous to FNR, PDR binds FMN rather than FAD in it's FNR-like domain. Electron transfer between pyrimidines and iron-sulfur clusters (Rieske center [2Fe-2S]) or heme groups is mediated by flavins in respiration, photosynthesis, and oxygenase systems. Type I dioxygenase systems, including the hydroxylate phthalate system, have 2 components, a monomeric reductase consisting of a flavin and a 2Fe-2S center and a multimeric oxygenase. In contrast to other Rieske dioxygenases the ferredoxin like domain is C-, not N-terminal.

>PRK07609 CDP-6-deoxy-delta-3,4-glucoseen reductase; Validated

Probab=96.63  E-value=0.00079  Score=54.23  Aligned_cols=35  Identities=20%  Similarity=0.103  Sum_probs=30.3

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMA   57 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~   57 (122)
                      .+.++|+|||.+||+  ++.+++.|++++++|.+.+.
T Consensus       297 ~~~~vy~CGp~~m~~~~~~~l~~~G~~~~~i~~e~F~  333 (339)
T PRK07609        297 SGHQVYACGSPVMVYAARDDFVAAGLPAEEFFADAFT  333 (339)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHcCCCHHHeEEeecc
Confidence            357899999999999  88889999999998877653

>PRK12575 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=96.54  E-value=0.0012  Score=51.94  Aligned_cols=25  Identities=28%  Similarity=0.461  Sum_probs=20.6

Q ss_pred             HcCCCcCCCCCCcccCCCeeeeeecc
Q 045945           56 MAVYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        56 ~~Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      ...+.+.++||.|+||+|.++| .|.
T Consensus        47 d~~l~fr~sCr~giCGsCa~~i-NG~   71 (235)
T PRK12575         47 DETLSYRRSCREGICGSDAMNI-NGR   71 (235)
T ss_pred             CCCeeeeccCCCCCCCCCeeEE-CCe
Confidence            4457789999999999999987 453

>cd06214 PA_degradation_oxidoreductase_like NAD(P) binding domain of ferredoxin reductase like phenylacetic acid (PA) degradation oxidoreductase

Probab=96.52  E-value=0.0014  Score=49.79  Aligned_cols=34  Identities=9%  Similarity=0.216  Sum_probs=29.2

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .....+|+|||..|++  ++++++.|+++++++.+.
T Consensus       204 ~~~~~v~icGp~~mv~~v~~~l~~~G~~~~~i~~e~  239 (241)
T cd06214         204 TEFDEAFLCGPEPMMDAVEAALLELGVPAERIHREL  239 (241)
T ss_pred             ccCcEEEEECCHHHHHHHHHHHHHcCCCHHHeeccc
Confidence            4468999999999999  888899999998887653

PA oxidoreductases of E. coli hydroxylate PA-CoA in the second step of PA degradation. Members of this group typically fuse a ferredoxin reductase-like domain with an iron-sulfur binding cluster domain. Ferredoxins catalyze electron transfer between an NAD(P)-binding domain of the alpha/beta class and a discrete (usually N-terminal) domain which vary in orientation with respect to the NAD(P) binding domain. The N-terminal portion may contain a flavin prosthetic group, as in flavoenzymes, or use flavin as a substrate. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and

>PRK08640 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=96.44  E-value=0.0014  Score=51.79  Aligned_cols=23  Identities=17%  Similarity=0.534  Sum_probs=19.8

Q ss_pred             CCCcCCCCCCcccCCCeeeeeecc
Q 045945           58 VYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        58 Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      -+.+.++||.|+||+|.++| .|.
T Consensus        56 ~l~fr~sCr~giCGsCam~I-NG~   78 (249)
T PRK08640         56 PVVWDMNCLEEVCGACSMVI-NGK   78 (249)
T ss_pred             CeeEecccCCCCCCcCeeEE-CCc
Confidence            47889999999999999987 554

>cd06216 FNR_iron_sulfur_binding_2 Iron-sulfur binding ferredoxin reductase (FNR) proteins combine the FAD and NAD(P) binding regions of FNR with an iron-sulfur binding cluster domain

Probab=96.42  E-value=0.0018  Score=49.53  Aligned_cols=31  Identities=13%  Similarity=0.195  Sum_probs=27.0

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS   54 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~   54 (122)
                      ...++|+|||.+|++  ++++++.|++ ++++.+
T Consensus       209 ~~~~vyvcGp~~m~~~~~~~l~~~Gv~-~~i~~e  241 (243)
T cd06216         209 ADRQVYACGPPGFLDAAEELLEAAGLA-DRLHTE  241 (243)
T ss_pred             ccCeEEEECCHHHHHHHHHHHHHCCCc-cceeec
Confidence            357999999999999  8888999999 887765

Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to for

>cd06190 T4MO_e_transfer_like Toluene-4-monoxygenase electron transfer component of Pseudomonas mendocina hydroxylates toluene and forms p-cresol as part of a three component toluene-4-monoxygenase system

Probab=96.37  E-value=0.0019  Score=48.93  Aligned_cols=35  Identities=9%  Similarity=0.010  Sum_probs=27.3

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCC-CchHHHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLK-SSSFKVSAM   56 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~-~~~L~a~~~   56 (122)
                      ..+.++|+|||.+||+  .+.+++.|+. +++++.+.+
T Consensus       194 ~~~~~vyiCGp~~m~~~v~~~l~~~g~~~~~~i~~e~f  231 (232)
T cd06190         194 LAEFEFYFAGPPPMVDAVQRMLMIEGVVPFDQIHFDRF  231 (232)
T ss_pred             ccccEEEEECCHHHHHHHHHHHHHhCCCChHheeeccc
Confidence            3468999999999999  7778787765 777776643

Electron transfer is from NADH to an NADH:ferredoxin oxidoreductase (TmoF in P. mendocina) to ferredoxin to an iron-containing oxygenase. TmoF is homologous to other mono- and dioxygenase systems within the ferredoxin reductase family.

>PF13085 Fer2_3: 2Fe-2S iron-sulfur cluster binding domain; PDB: 3P4Q_N 1KFY_N 3CIR_N 3P4R_B 2B76_N 1KF6_B 3P4P_N 3P4S_B 1L0V_B 1ZOY_B

Probab=96.34  E-value=0.0026  Score=44.86  Aligned_cols=26  Identities=35%  Similarity=0.786  Sum_probs=17.4

Q ss_pred             HHcCCCcCCCCCCcccCCCeeeeeecc
Q 045945           55 AMAVYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        55 ~~~Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      +..-+...++||.|+||+|.++| .|.
T Consensus        42 ~D~sLafr~sCr~giCGsCam~I-NG~   67 (110)
T PF13085_consen   42 QDPSLAFRYSCRSGICGSCAMRI-NGR   67 (110)
T ss_dssp             T-TT--B--SSSSSSSSTTEEEE-TTE
T ss_pred             cCCCeEEEecCCCCCCCCCEEEE-CCc
Confidence            34578899999999999999987 443

...

>PLN00129 succinate dehydrogenase [ubiquinone] iron-sulfur subunit

Probab=96.06  E-value=0.0035  Score=50.53  Aligned_cols=24  Identities=33%  Similarity=0.742  Sum_probs=20.1

Q ss_pred             cCCCcCCCCCCcccCCCeeeeeecc
Q 045945           57 AVYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      .-+.+.++||.|+||+|.++| .|.
T Consensus        88 ~sLsfr~sCr~giCGsCam~I-NG~  111 (276)
T PLN00129         88 PSLTFRRSCREGICGSCAMNI-DGK  111 (276)
T ss_pred             CCeEEeccCCCCCCCCCeeEE-CCc
Confidence            347789999999999999987 554

>cd06183 cyt_b5_reduct_like Cytochrome b5 reductase catalyzes the reduction of 2 molecules of cytochrome b5 using NADH as an electron donor

Probab=96.01  E-value=0.0044  Score=46.59  Aligned_cols=32  Identities=22%  Similarity=0.422  Sum_probs=26.1

Q ss_pred             CCCCCeeEEcCChhhhh---HhHHHHcCCCCchHH
Q 045945           21 PTRMKFPLVKSPGSLVS---RSVSKAFGLKSSSFK   52 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L~   52 (122)
                      |..+.++|+|||.+||+   ++.+++.|+++++++
T Consensus       198 ~~~~~~~~icGp~~~~~~~~~~~l~~~G~~~~~i~  232 (234)
T cd06183         198 PSEDTLVLVCGPPPMIEGAVKGLLKELGYKKDNVF  232 (234)
T ss_pred             CCCCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            34678999999999998   677788899887653

Like ferredoxin reductases, these proteins have an N-terminal FAD binding subdomain and a C-terminal NADH binding subdomain, separated by a cleft, which accepts FAD. The NADH-binding moiety interacts with part of the FAD and resembles a Rossmann fold. However, NAD is bound differently than in canonical Rossmann fold proteins. Nitrate reductases, flavoproteins similar to pyridine nucleotide cytochrome reductases, catalyze the reduction of nitrate to nitrite. The enzyme can be divided into three functional fragments that bind the cofactors molybdopterin, heme-iron, and FAD/NADH.

>PF00175 NAD_binding_1: Oxidoreductase NAD-binding domain ; InterPro: IPR001433 Bacterial ferredoxin-NADP+ reductase may be bound to the thylakoid membrane or anchored to the thylakoid-bound phycobilisomes

Probab=95.73  E-value=0.0042  Score=41.39  Aligned_cols=17  Identities=6%  Similarity=0.118  Sum_probs=15.0

Q ss_pred             CCCCCeeEEcCChhhhh
Q 045945           21 PTRMKFPLVKSPGSLVS   37 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~   37 (122)
                      ...+.++|+|||.+||+
T Consensus        89 ~~~~~~v~iCGp~~m~~  105 (109)
T PF00175_consen   89 DPDDTHVYICGPPPMMK  105 (109)
T ss_dssp             CTTTEEEEEEEEHHHHH
T ss_pred             CCCCCEEEEECCHHHHH
Confidence            35688999999999997

Chloroplast ferredoxin-NADP+ reductase (1.18.1.2 from EC) may play a key role in regulating the relative amounts of cyclic and non-cyclic electron flow to meet the demands of the plant for ATP and reducing power. It is involved in the final step in the linear photosynthetic electron transport chain and has also been implicated in cyclic electron flow around photosystem I where its role would be to return electrons from ferredoxin to the cytochrome B-F complex. This domain is present in a variety of proteins that include, bacterial flavohemoprotein, mammalian NADH-cytochrome b5 reductase, eukaryotic NADPH-cytochrome P450 reductase, nitrate reductase from plants, nitric-oxide synthase, bacterial vanillate demethylase, as well as others.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1UMK_A 1CNE_A 2CND_A 1CNF_A 4FK8_A 4F7D_A 2XNJ_B 1FDR_A 1JB9_A 3LVB_A ....

>cd06193 siderophore_interacting Siderophore interacting proteins share the domain structure of the ferredoxin reductase like family

Probab=95.65  E-value=0.0074  Score=46.27  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=26.1

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHH-cCCCCchHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKA-FGLKSSSFKV   53 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~-~~~~~~~L~a   53 (122)
                      +..+.++|+|||.+||+  ++.+++ .|+++.++|+
T Consensus       195 ~~~~~~vyicGp~~mv~~v~~~l~~~~g~~~~~i~~  230 (235)
T cd06193         195 PAGDGYVWIAGEAGAVRALRRHLREERGVPRAQVYA  230 (235)
T ss_pred             CCCCeEEEEEccHHHHHHHHHHHHHccCCCHHHEEE
Confidence            34467999999999999  777765 6999887653

Siderophores are produced in various bacteria (and some plants) to extract iron from hosts. Binding constants are high, so iron can be pilfered from transferrin and lactoferrin for bacterial uptake, contributing to pathogen virulence. Ferredoxin reductase (FNR), an FAD and NAD(P) binding protein, was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and has a variety of physiological functions including nitrogen assimilation, dinitrogen fixation, steroid hy

>TIGR01973 NuoG NADH-quinone oxidoreductase, chain G

Probab=95.64  E-value=0.0097  Score=51.90  Aligned_cols=59  Identities=19%  Similarity=0.287  Sum_probs=46.1

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      .+.+++|+  |+++.++||.||+-|.      .|.|..|.|+| +|..              ...+.+|.+.+...++|.
T Consensus         7 ~~~~~~g~~il~a~~~~gi~ip~~C~~~~l~~~g~Cr~C~v~v-~g~~--------------~~~~~aC~~~~~~gm~v~   71 (603)
T TIGR01973         7 ELEVPKGTTVLQACLSAGIEIPRFCYHEKLSIAGNCRMCLVEV-EKFP--------------DKPVASCATPVTDGMKIS   71 (603)
T ss_pred             EEEeCCCCHHHHHHHHcCCCccccCCCCCCCCCCccccCEEEE-CCCC--------------CCcccccCCCCCCCCEEE
Confidence            44567777  8999999999999996      89999999998 2210              014678999888888887


Q ss_pred             ec
Q 045945          115 TH  116 (122)
Q Consensus       115 l~  116 (122)
                      ..
T Consensus        72 t~   73 (603)
T TIGR01973        72 TN   73 (603)
T ss_pred             eC
Confidence            64

This model represents the G subunit (one of 14: A-N) of the NADH-quinone oxidoreductase complex I which generally couples NADH and ubiquinone oxidation/reduction in bacteria and mammalian mitochondria while translocating protons, but may act on NADPH and/or plastoquinone in cyanobacteria and plant chloroplasts. This model excludes related subunits from formate dehydrogenase complexes.

>PTZ00319 NADH-cytochrome B5 reductase; Provisional

Probab=95.61  E-value=0.007  Score=48.56  Aligned_cols=29  Identities=10%  Similarity=0.246  Sum_probs=24.7

Q ss_pred             CCeeEEcCChhhhh---HhHHHHcCCCCchHH
Q 045945           24 MKFPLVKSPGSLVS---RSVSKAFGLKSSSFK   52 (122)
Q Consensus        24 ~~~~YvCGP~~fm~---~~~~~~~~~~~~~L~   52 (122)
                      +..+|+|||.+||+   ++.+++.|++.++++
T Consensus       267 ~~~vyiCGp~~mv~~~~~~~L~~~G~~~~~i~  298 (300)
T PTZ00319        267 KVMALMCGPPPMLQMAVKPNLEKIGYTADNMF  298 (300)
T ss_pred             CeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            46899999999998   578899999987754

>PRK12814 putative NADPH-dependent glutamate synthase small subunit; Provisional

Probab=95.20  E-value=0.016  Score=51.25  Aligned_cols=59  Identities=22%  Similarity=0.397  Sum_probs=45.7

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      .+.+++|+  |+++.++|+.||+.|.      .|.|+.|.|+| +|.               .+.+.+|++.+...+.|.
T Consensus        12 ~~~~~~g~ti~~a~~~~g~~ip~~c~~~~~~~~g~C~~C~V~v-~g~---------------~~~~~aC~t~~~~Gm~v~   75 (652)
T PRK12814         12 SVTAAPGTSILEAAASAGITIPTLCFHQELEATGSCWMCIVEI-KGK---------------NRFVPACSTAVSEGMVIE   75 (652)
T ss_pred             EEEeCCcCcHHHHHHHcCCccccccCCCCCCCccccceeEEEE-CCC---------------cceecCcCCCCCCCCEEE
Confidence            44566776  8999999999999997      79999999987 331               124778998888888887


Q ss_pred             ecC
Q 045945          115 THK  117 (122)
Q Consensus       115 l~~  117 (122)
                      ...
T Consensus        76 t~~   78 (652)
T PRK12814         76 TEN   78 (652)
T ss_pred             eCc
Confidence            643

>PTZ00306 NADH-dependent fumarate reductase; Provisional

Probab=95.05  E-value=0.014  Score=54.84  Aligned_cols=32  Identities=13%  Similarity=0.215  Sum_probs=27.4

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFK   52 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~   52 (122)
                      |..+.++|+|||.+||+  +++++..|+++++++
T Consensus      1126 ~~~~~~vyiCGP~~mv~~v~~~L~~~G~~~~~I~ 1159 (1167)
T PTZ00306       1126 PSKDLLVAICGPPVMQRAVKADLLALGYNMELVR 1159 (1167)
T ss_pred             CCCCeEEEEeCCHHHHHHHHHHHHHcCCCHHHeE
Confidence            33567899999999999  888899999988765

>PRK12386 fumarate reductase iron-sulfur subunit; Provisional

Probab=94.85  E-value=0.024  Score=45.12  Aligned_cols=22  Identities=27%  Similarity=0.936  Sum_probs=19.0

Q ss_pred             CCcCCCCCCcccCCCeeeeeecc
Q 045945           59 YKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        59 i~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      +.+.++|+.|+||+|.+.| .|.
T Consensus        47 l~~r~~C~~g~CGsCa~~I-nG~   68 (251)
T PRK12386         47 LAVRWNCKAGKCGSCSAEI-NGR   68 (251)
T ss_pred             CcccCCCCCCcCCCCEEEE-Ccc
Confidence            5788999999999999987 554

>PTZ00305 NADH:ubiquinone oxidoreductase; Provisional

Probab=94.70  E-value=0.027  Score=45.95  Aligned_cols=58  Identities=21%  Similarity=0.431  Sum_probs=44.0

Q ss_pred             HcCC-CCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945           43 AFGL-KSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI  113 (122)
Q Consensus        43 ~~~~-~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I  113 (122)
                      .+.+ ++|.  |+++.++||.||+-|-      .|.|+.|.|.| +|.               .+.+-+|.+.+...++|
T Consensus        77 ~VeV~~~G~TILeAAr~~GI~IPtLCy~~~L~p~G~CRlClVEV-eG~---------------~~lv~AC~tpV~eGM~V  140 (297)
T PTZ00305         77 PVEIIPQEENLLEVLEREGIRVPKFCYHPILSVAGNCRMCLVQV-DGT---------------QNLVVSCATVALPGMSI  140 (297)
T ss_pred             EEEecCCCChHHHHHHHcCCCcCccccCCCCCCCCccceeEEEE-CCC---------------cCcccccCCcCCCCCEE
Confidence            3455 5565  8999999999999994      58899999988 331               13566888888888888


Q ss_pred             Eec
Q 045945          114 YTH  116 (122)
Q Consensus       114 ~l~  116 (122)
                      ...
T Consensus       141 ~T~  143 (297)
T PTZ00305        141 ITD  143 (297)
T ss_pred             EeC
Confidence            764

>PRK09130 NADH dehydrogenase subunit G; Validated

Probab=94.55  E-value=0.03  Score=50.02  Aligned_cols=60  Identities=23%  Similarity=0.388  Sum_probs=45.2

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI  113 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I  113 (122)
                      +.+.+++|.  |+++.++||.||+-|-      .|.|+.|.|.|..+.               ...+-+|.+.+...++|
T Consensus         9 ~~v~v~~g~til~a~~~~gi~IP~lCy~~~l~~~g~Cr~ClVev~~~~---------------~~~~~sC~~~v~~gm~v   73 (687)
T PRK09130          9 KEIEVPDGYTLLQACEAAGAEIPRFCYHERLSIAGNCRMCLVEVKGGP---------------PKPVASCAMPVGEGMVI   73 (687)
T ss_pred             EEEEeCCCCHHHHHHHHcCCCcCcccCCCCCCCCCCCCCCEEEECCCC---------------CCcccccCCCCCCCCEE
Confidence            345678877  9999999999999995      899999999984210               12345788777777777


Q ss_pred             Eec
Q 045945          114 YTH  116 (122)
Q Consensus       114 ~l~  116 (122)
                      ...
T Consensus        74 ~T~   76 (687)
T PRK09130         74 FTN   76 (687)
T ss_pred             EeC
Confidence            654

>cd06197 FNR_like_2 FAD/NAD(P) binding domain of ferredoxin reductase-like proteins

Probab=94.50  E-value=0.013  Score=44.62  Aligned_cols=18  Identities=11%  Similarity=-0.034  Sum_probs=15.0

Q ss_pred             eeEEcCChhhhh--HhHHHH
Q 045945           26 FPLVKSPGSLVS--RSVSKA   43 (122)
Q Consensus        26 ~~YvCGP~~fm~--~~~~~~   43 (122)
                      ++|+|||.+||+  ++.++.
T Consensus       192 ~v~~CGP~~m~~~~~~~~~~  211 (220)
T cd06197         192 EVYLCGPPALEKAVLEWLEG  211 (220)
T ss_pred             cEEEECcHHHHHHHHHHhhh
Confidence            899999999999  665554

Ferredoxin reductase (FNR) was intially identified as a chloroplast reductase activity, catalyzing the electron transfer from reduced iron-sulfur protein ferredoxin to NADP+ as the final step in the electron transport mechanism of photosystem I. FNR transfers electrons from reduced ferredoxin to FAD (forming FADH2 via a semiquinone intermediate) and then transfers a hydride ion to convert NADP+ to NADPH. FNR has since been shown to utilize a variety of electron acceptors and donors and have a variety of physiological functions in a variety of organisms including nitrogen assimilation, dinitrogen fixation, steroid hydroxylation, fatty acid metabolism, oxygenase activity, and methane assimilation. FNR has an NAD(P)-binding sub-domain of the alpha/beta class and a discrete (usually N-terminal) flavin sub-domain which varies in orientation with respect to the NAD(P) binding domain. The N-terminal moeity

>TIGR00384 dhsB succinate dehydrogenase and fumarate reductase iron-sulfur protein

Probab=94.42  E-value=0.027  Score=43.38  Aligned_cols=31  Identities=26%  Similarity=0.530  Sum_probs=23.1

Q ss_pred             HHHHHHc------CCCcCCCCCCcccCCCeeeeeeccc
Q 045945           51 FKVSAMA------VYKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        51 L~a~~~~------Gi~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      |+++...      .+...++|+.|+||+|.++| .|..
T Consensus        28 l~~l~~i~~~~~~~l~~~~~C~~g~Cg~C~v~v-nG~~   64 (220)
T TIGR00384        28 LDALNYIKDEQDPSLAFRRSCRNGICGSCAMNV-NGKP   64 (220)
T ss_pred             HHHHHHHHHhcCCCceeecccCCCCCCCCeeEE-CCEE
Confidence            5555543      35577999999999999986 6643

Succinate dehydrogenase and fumarate reductase are reverse directions of the same enzymatic interconversion, succinate + FAD+ = fumarate + FADH2 (EC 1.3.11.1). In E. coli, the forward and reverse reactions are catalyzed by distinct complexes: fumarate reductase operates under anaerobic conditions and succinate dehydrogenase operates under aerobic conditions. This model also describes a region of the B subunit of a cytosolic archaeal fumarate reductase.

>PLN03116 ferredoxin--NADP+ reductase; Provisional

Probab=94.29  E-value=0.054  Score=43.44  Aligned_cols=15  Identities=0%  Similarity=-0.148  Sum_probs=13.6

Q ss_pred             CCCeeEEcCChhhhh
Q 045945           23 RMKFPLVKSPGSLVS   37 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~   37 (122)
                      .+.++|+|||.+||+
T Consensus       258 ~~~~vYiCGp~~mv~  272 (307)
T PLN03116        258 NGAHIYFCGLKGMMP  272 (307)
T ss_pred             CCcEEEEeCCHHHHH
Confidence            467899999999998

>KOG3309 consensus Ferredoxin [Energy production and conversion]

Probab=94.22  E-value=0.093  Score=39.25  Aligned_cols=67  Identities=15%  Similarity=0.208  Sum_probs=49.2

Q ss_pred             HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCCCCChh--------cccCCeEEeeceEECCC---eEEEecCC
Q 045945           51 FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGSFLDDN--------QMEKGYVLTCIAYPKSD---CVIYTHKE  118 (122)
Q Consensus        51 L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~~Ls~~--------e~~~g~~LaCqs~~~sd---l~I~l~~~  118 (122)
                      |+++..+||+++-.|. .-.|.+|.|.|-+-..+..+. ...++        ...+..||-||-...-+   ++|.+|+.
T Consensus        67 Ld~ah~n~idleGACEgslACSTCHViv~~~~yekl~e-p~DeE~DmLDlA~gLt~tSRLGCQI~l~keldG~~v~vP~a  145 (159)
T KOG3309|consen   67 LDAAHENNLDLEGACEGSLACSTCHVIVDEEYYEKLPE-PEDEENDMLDLAFGLTETSRLGCQIVLTKELDGMRVAVPEA  145 (159)
T ss_pred             HHHHHHcCCCccccccccccccceEEEEcHHHHhcCCC-CcchHHHHHHhhhccccccccceEEEeccccCCcEEECccc
Confidence            9999999999999997 899999999997655443321 11111        13456899999997654   68888764

>PRK12577 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=94.00  E-value=0.048  Score=44.66  Aligned_cols=36  Identities=17%  Similarity=0.436  Sum_probs=27.5

Q ss_pred             CCCCch--HHHHHHcCCCcC------CCCCCcccCCCeeeeeecc
Q 045945           45 GLKSSS--FKVSAMAVYKLP------YSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        45 ~~~~~~--L~a~~~~Gi~i~------~~Cr~G~CGtCkv~vl~G~   81 (122)
                      .++++.  |+++...++.++      ++|+.|+||+|.++| .|.
T Consensus        24 ~~~~~~tvL~~l~~i~~~~d~tL~~~~~c~~~~Cg~C~v~i-nG~   67 (329)
T PRK12577         24 EVEPGNTILDCLNRIKWEQDGSLAFRKNCRNTICGSCAMRI-NGR   67 (329)
T ss_pred             ECCCCChHHHHHHHhCCcCCCCcEEcCCCCCCCCCCCEEEE-CCe
Confidence            344544  788888877764      679999999999998 564

>PRK07570 succinate dehydrogenase/fumarate reductase iron-sulfur subunit; Validated

Probab=93.89  E-value=0.028  Score=44.66  Aligned_cols=24  Identities=25%  Similarity=0.653  Sum_probs=20.5

Q ss_pred             CCCcCCCCCCcccCCCeeeeeeccc
Q 045945           58 VYKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        58 Gi~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      .+.+.++||.|+||+|.++| .|..
T Consensus        51 ~l~fr~sCr~~iCGsCam~I-NG~p   74 (250)
T PRK07570         51 PVAFDHDCREGICGMCGLVI-NGRP   74 (250)
T ss_pred             CeeEeccccCCcCCcceeEE-CCcc
Confidence            47899999999999999987 5553

>PRK07860 NADH dehydrogenase subunit G; Validated

Probab=93.84  E-value=0.022  Score=51.54  Aligned_cols=59  Identities=17%  Similarity=0.392  Sum_probs=45.7

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI  113 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I  113 (122)
                      +.+.+++|.  |+++..+|+.||+-|-      .|.|..|.|.| +|.               .+.+-+|.+.+...++|
T Consensus        12 ~~~~~~~g~til~aa~~~gi~ip~~C~~~~l~~~g~Cr~C~Vev-~g~---------------~~~~~aC~t~v~~gm~V   75 (797)
T PRK07860         12 VEVSVPKGTLVIRAAELLGIQIPRFCDHPLLDPVGACRQCLVEV-EGQ---------------RKPQASCTTTVTDGMVV   75 (797)
T ss_pred             EEEEeCCCChHHHHHHHcCCCCCeecCCCCCCCCcccCccEEEE-CCC---------------cccccccCCCCCCCcEE
Confidence            455677777  8999999999999995      79999999999 221               12355788888888887


Q ss_pred             Eec
Q 045945          114 YTH  116 (122)
Q Consensus       114 ~l~  116 (122)
                      +..
T Consensus        76 ~t~   78 (797)
T PRK07860         76 KTQ   78 (797)
T ss_pred             EeC
Confidence            764

>PRK08493 NADH dehydrogenase subunit G; Validated

Probab=93.70  E-value=0.052  Score=49.68  Aligned_cols=56  Identities=21%  Similarity=0.317  Sum_probs=42.9

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCC-----C-CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSC-----R-AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~C-----r-~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      .+.+++|+  |+++.++|+.+|+-|     . .|.|+.|.|.| +|.                 .+++|.+.+...++|.
T Consensus        10 ~v~~~~G~til~aa~~~gi~iP~lC~~~~~~~~G~Cr~C~VeV-~G~-----------------~~~AC~t~v~dGM~V~   71 (819)
T PRK08493         10 ECEAQEGEYILNVARRNGIFIPAICYLSGCSPTLACRLCMVEA-DGK-----------------RVYSCNTKAKEGMNIL   71 (819)
T ss_pred             EEEeCCCCHHHHHHHHcCCccccccccCCCCCCccccceEEEE-CCE-----------------EeccccCCCCCCCEEE
Confidence            34567777  899999999999866     3 69999999988 331                 1568888888778776


Q ss_pred             ec
Q 045945          115 TH  116 (122)
Q Consensus       115 l~  116 (122)
                      ..
T Consensus        72 T~   73 (819)
T PRK08493         72 TN   73 (819)
T ss_pred             ec
Confidence            54

>cd06201 SiR_like2 Cytochrome p450- like alpha subunits of E

Probab=93.69  E-value=0.054  Score=43.08  Aligned_cols=21  Identities=10%  Similarity=0.018  Sum_probs=16.4

Q ss_pred             CCCeeEEcCChhhhh--HhHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKA   43 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~   43 (122)
                      .+.++|+|||.+||+  .+.+++
T Consensus       244 ~~~~vyiCGp~~M~~~v~~~L~~  266 (289)
T cd06201         244 DGAQIMVCGSRAMAQGVAAVLEE  266 (289)
T ss_pred             CCcEEEEECCHHHHHHHHHHHHH
Confidence            367899999999999  444444

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via F

>PRK10926 ferredoxin-NADP reductase; Provisional

Probab=93.63  E-value=0.071  Score=41.34  Aligned_cols=26  Identities=8%  Similarity=0.096  Sum_probs=19.4

Q ss_pred             CCCeeEEcCChhhhh--HhHHHH-cCCCC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKA-FGLKS   48 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~-~~~~~   48 (122)
                      .+.++|+|||.+||+  +++++. .++++
T Consensus       205 ~~~~vy~CGp~~Mv~~~~~~l~~~~~~~~  233 (248)
T PRK10926        205 ETSHVMLCGNPQMVRDTQQLLKETRQMTK  233 (248)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHHhcCccc
Confidence            457899999999999  666644 55543

>PLN03115 ferredoxin--NADP(+) reductase; Provisional

Probab=93.41  E-value=0.097  Score=43.66  Aligned_cols=16  Identities=0%  Similarity=-0.035  Sum_probs=13.8

Q ss_pred             CCCCeeEEcCChhhhh
Q 045945           22 TRMKFPLVKSPGSLVS   37 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~   37 (122)
                      ..+.++|+|||.+|++
T Consensus       317 ~~~~~vYiCGp~~M~~  332 (367)
T PLN03115        317 KDNTYVYMCGLKGMEK  332 (367)
T ss_pred             cCCeEEEEeCCHHHHH
Confidence            3468999999999988

>COG1034 NuoG NADH dehydrogenase/NADH:ubiquinone oxidoreductase 75 kD subunit (chain G) [Energy production and conversion]

Probab=93.39  E-value=0.062  Score=48.42  Aligned_cols=59  Identities=24%  Similarity=0.380  Sum_probs=43.7

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI  113 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I  113 (122)
                      +++.++++.  |+++..+|++||+-|=      .|.|..|.|.+-.+.                ..+-+|.+.+...++|
T Consensus         9 ~ei~v~~g~tvLqAa~~aGi~IP~fCyh~~ls~~GaCRmClVEveg~~----------------k~~~SC~tpv~dGM~I   72 (693)
T COG1034           9 KEIEVPEGETVLQAAREAGIDIPTFCYHPRLSIAGACRMCLVEVEGAP----------------KLVASCATPVTDGMVI   72 (693)
T ss_pred             EEEecCCCcHHHHHHHHcCCCCCcccccCCCCcccceeEEEEEecCCC----------------ccccccccccCCCeEE
Confidence            456778877  9999999999999982      699999998884432                2456787766666666


Q ss_pred             Eec
Q 045945          114 YTH  116 (122)
Q Consensus       114 ~l~  116 (122)
                      ...
T Consensus        73 ~T~   75 (693)
T COG1034          73 STN   75 (693)
T ss_pred             ecC
Confidence            553

>PRK09129 NADH dehydrogenase subunit G; Validated

Probab=93.13  E-value=0.059  Score=48.39  Aligned_cols=58  Identities=16%  Similarity=0.270  Sum_probs=44.3

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      .+.+++|+  |+++..+|+.||+-|-      .|.|..|.|+| +|.               ...+.+|.+.+...++|.
T Consensus        10 ~~~~~~g~~il~a~~~~g~~ip~~c~~~~~~~~~~C~~C~v~v-~~~---------------~~~~~aC~~~~~~gm~v~   73 (776)
T PRK09129         10 KVEVPEGSMVIEAADKAGIYIPRFCYHKKLSIAANCRMCLVEV-EKA---------------PKPLPACATPVTDGMKVF   73 (776)
T ss_pred             EEEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCCCcceeEEEE-CCC---------------CCcCcccCCCCCCCCEEE
Confidence            44567777  8999999999999997      59999999998 221               123567888888777776


Q ss_pred             ec
Q 045945          115 TH  116 (122)
Q Consensus       115 l~  116 (122)
                      ..
T Consensus        74 t~   75 (776)
T PRK09129         74 TR   75 (776)
T ss_pred             cC
Confidence            54

>PRK05950 sdhB succinate dehydrogenase iron-sulfur subunit; Reviewed

Probab=93.10  E-value=0.084  Score=40.97  Aligned_cols=31  Identities=23%  Similarity=0.370  Sum_probs=23.5

Q ss_pred             HHHHHHcC------CCcCCCCCCcccCCCeeeeeeccc
Q 045945           51 FKVSAMAV------YKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        51 L~a~~~~G------i~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      |+++...+      +...++|+.|+||+|.+.| .|..
T Consensus        32 l~~L~~~~~~~~~~l~~~~~c~~g~Cg~C~v~v-nG~~   68 (232)
T PRK05950         32 LDALIKIKNEIDPTLTFRRSCREGVCGSDAMNI-NGKN   68 (232)
T ss_pred             HHHHHHhCCccCCcceeeCCCCCCCCCCCEEEE-CCcC
Confidence            66666665      2346899999999999998 6653

>COG4097 Predicted ferric reductase [Inorganic ion transport and metabolism]

Probab=92.94  E-value=0.11  Score=44.07  Aligned_cols=32  Identities=13%  Similarity=0.161  Sum_probs=27.3

Q ss_pred             CeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           25 KFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        25 ~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      ..+|+|||.+||+  ++.++..++|-.++|.|.+
T Consensus       402 ~sv~fCGP~~m~dsL~r~l~~~~~~i~~~h~E~F  435 (438)
T COG4097         402 RSVFFCGPIKMMDSLRRDLKKQNVPITNFHYEHF  435 (438)
T ss_pred             ceEEEEcCHHHHHHHHHHHHHcCCCHHHHHHHhc
Confidence            5899999999999  7778888998777777754

>PRK11433 aldehyde oxidoreductase 2Fe-2S subunit; Provisional

Probab=92.89  E-value=0.091  Score=41.18  Aligned_cols=37  Identities=16%  Similarity=0.383  Sum_probs=25.9

Q ss_pred             CCCCch--HHHHHHc-C-CCcCCCCCCcccCCCeeeeeeccc
Q 045945           45 GLKSSS--FKVSAMA-V-YKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        45 ~~~~~~--L~a~~~~-G-i~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      .++++.  |++++.+ | ....++|+.|.||.|.| +++|..
T Consensus        64 ~v~~~~tLLd~LR~~l~ltGtK~GC~~G~CGACTV-lVdG~~  104 (217)
T PRK11433         64 EVDTRTTLLDALREHLHLTGTKKGCDHGQCGACTV-LVNGRR  104 (217)
T ss_pred             ecCCCCcHHHHHHHhcCCCCCCCCCCCCCcCceEE-EECCEE
Confidence            344444  6666543 3 24789999999999999 667754

>COG0479 FrdB Succinate dehydrogenase/fumarate reductase, Fe-S protein subunit [Energy production and conversion]

Probab=92.81  E-value=0.053  Score=42.90  Aligned_cols=26  Identities=31%  Similarity=0.641  Sum_probs=21.4

Q ss_pred             HcCCCcCCCCCCcccCCCeeeeeeccc
Q 045945           56 MAVYKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        56 ~~Gi~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      ..-+.+.++||.|+||+|.+.| .|..
T Consensus        44 d~~Lsfr~sCR~gICGSCam~I-NG~p   69 (234)
T COG0479          44 DPTLSFRRSCREGICGSCAMNI-NGKP   69 (234)
T ss_pred             CCccchhhhccCCcCCcceeEE-CCcc
Confidence            4567899999999999999987 5543

>cd06206 bifunctional_CYPOR These bifunctional proteins fuse N-terminal cytochrome p450 with a cytochrome p450 reductase (CYPOR)

Probab=92.66  E-value=0.069  Score=44.14  Aligned_cols=27  Identities=19%  Similarity=0.113  Sum_probs=20.9

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS   49 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~   49 (122)
                      .++++|+|||.+|++  .+++++++.+.+
T Consensus       327 ~~~~vyiCGp~~M~~~v~~~L~~i~~~~~  355 (384)
T cd06206         327 QGARVYVCGDGRMAPGVREVLKRIYAEKD  355 (384)
T ss_pred             CCcEEEEECCCchHHHHHHHHHHHHHHhC
Confidence            568999999999988  666666665554

NADPH cytochrome p450 reductase serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a la

>cd06208 CYPOR_like_FNR These ferredoxin reductases are related to the NADPH cytochrome p450 reductases (CYPOR), but lack the FAD-binding region connecting sub-domain

Probab=92.48  E-value=0.092  Score=41.52  Aligned_cols=21  Identities=0%  Similarity=-0.091  Sum_probs=16.7

Q ss_pred             CCCeeEEcCChhhhh--HhHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKA   43 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~   43 (122)
                      .+.++|+|||.+||+  .+++++
T Consensus       238 ~~~~vYiCGp~~m~~~v~~~L~~  260 (286)
T cd06208         238 DNTHVYICGLKGMEPGVDDALTS  260 (286)
T ss_pred             CCcEEEEeCCchHHHHHHHHHHH
Confidence            456899999999999  555554

Ferredoxin-NADP+ reductase (FNR) is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins, such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap between the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredoxin to form a flavin semiquinone intermediate. The enzyme then accepts a second electron to form FADH2, which then

>PRK12576 succinate dehydrogenase iron-sulfur subunit; Provisional

Probab=92.20  E-value=0.15  Score=41.01  Aligned_cols=31  Identities=16%  Similarity=0.324  Sum_probs=22.6

Q ss_pred             HHHHHHcCCC------cCCCCCCcccCCCeeeeeeccc
Q 045945           51 FKVSAMAVYK------LPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        51 L~a~~~~Gi~------i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      |+++...+..      ..++|+.|+||+|.+.| .|..
T Consensus        38 Ld~L~~i~~~~d~tl~~~~~C~~G~CgsC~v~I-NG~~   74 (279)
T PRK12576         38 TEALRRIKEEQDPTLSYRASCHMAVCGSCGMKI-NGEP   74 (279)
T ss_pred             HHHHHHhCCccCCCceecCCCCCCCCCCCEEEE-CCcE
Confidence            5555554433      36899999999999998 6643

>PRK12385 fumarate reductase iron-sulfur subunit; Provisional

Probab=91.84  E-value=0.095  Score=41.29  Aligned_cols=24  Identities=21%  Similarity=0.578  Sum_probs=19.6

Q ss_pred             cCCCcCCCCCCcccCCCeeeeeecc
Q 045945           57 AVYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      ..+...++|+.|+||+|.++|- |.
T Consensus        50 ~~l~fr~~C~~giCGsC~v~In-G~   73 (244)
T PRK12385         50 PDLSYRWSCRMAICGSCGMMVN-NV   73 (244)
T ss_pred             CCceeccCCCCCcCCCCcceEC-cc
Confidence            4566778999999999999984 63

>PLN02252 nitrate reductase [NADPH]

Probab=91.78  E-value=0.11  Score=47.94  Aligned_cols=29  Identities=14%  Similarity=0.308  Sum_probs=24.2

Q ss_pred             CCCeeEEcCChhhhh---HhHHHHcCCCCchH
Q 045945           23 RMKFPLVKSPGSLVS---RSVSKAFGLKSSSF   51 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L   51 (122)
                      ....+|+|||.+||+   +..++..|++++++
T Consensus       854 ~~~~vyiCGPp~Mi~~av~~~L~~~G~~~~~I  885 (888)
T PLN02252        854 DETLALMCGPPPMIEFACQPNLEKMGYDKDSI  885 (888)
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHHcCCCHHHE
Confidence            456799999999998   56889999997764

>cd06200 SiR_like1 Cytochrome p450- like alpha subunits of E

Probab=91.71  E-value=0.13  Score=39.88  Aligned_cols=19  Identities=11%  Similarity=-0.094  Sum_probs=15.1

Q ss_pred             CCeeEEcCCh-hhhh--HhHHH
Q 045945           24 MKFPLVKSPG-SLVS--RSVSK   42 (122)
Q Consensus        24 ~~~~YvCGP~-~fm~--~~~~~   42 (122)
                      ..++|+|||. +||+  ++++.
T Consensus       202 ~~~vy~CGp~~~m~~~v~~~l~  223 (245)
T cd06200         202 GAAIYVCGSLQGMAPGVDAVLD  223 (245)
T ss_pred             CcEEEEECCchhhhHHHHHHHH
Confidence            5789999999 9998  45443

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD

>cd06182 CYPOR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=91.33  E-value=0.19  Score=39.53  Aligned_cols=21  Identities=5%  Similarity=-0.075  Sum_probs=16.9

Q ss_pred             CCeeEEcCChh-hhh--HhHHHHc
Q 045945           24 MKFPLVKSPGS-LVS--RSVSKAF   44 (122)
Q Consensus        24 ~~~~YvCGP~~-fm~--~~~~~~~   44 (122)
                      +..+|+|||.+ ||+  .+++++.
T Consensus       214 ~~~vyvCGp~~~m~~~v~~~L~~~  237 (267)
T cd06182         214 GAHIYVCGDAKSMAKDVEDALVKI  237 (267)
T ss_pred             CCEEEEECCcccchHHHHHHHHHH
Confidence            45899999999 999  6666555

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPOR has a C-terminal ferredoxin reducatase (FNR)- like FAD and NAD binding module, an FMN-binding domain, and an additional conecting domain (inserted within the FAD binding region) that orients the FNR and FMN binding domains. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria and participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-t

>KOG0534 consensus NADH-cytochrome b-5 reductase [Coenzyme transport and metabolism; Energy production and conversion]

Probab=91.32  E-value=0.2  Score=40.67  Aligned_cols=27  Identities=11%  Similarity=0.309  Sum_probs=22.2

Q ss_pred             CCeeEEcCChhhhh---HhHHHHcCCCCch
Q 045945           24 MKFPLVKSPGSLVS---RSVSKAFGLKSSS   50 (122)
Q Consensus        24 ~~~~YvCGP~~fm~---~~~~~~~~~~~~~   50 (122)
                      ...+++|||.+|++   ...+..+|+++++
T Consensus       253 ~~~~liCGPp~m~~~~~~~~le~Lg~~~~~  282 (286)
T KOG0534|consen  253 ETLVLICGPPPMINGAAQGNLEKLGYNEDQ  282 (286)
T ss_pred             CeEEEEECCHHHHhHHHHHHHHhcCCChHh
Confidence            58999999999997   5555668998765

>KOG3378 consensus Globins and related hemoproteins [Energy production and conversion]

Probab=90.82  E-value=0.14  Score=42.12  Aligned_cols=33  Identities=6%  Similarity=0.077  Sum_probs=28.8

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS   54 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~   54 (122)
                      ....++|.|||..||+  +.-+..+|+.++.++.+
T Consensus       344 ~s~~DiY~~G~~~~M~~~~~~L~~L~~~~~~v~~E  378 (385)
T KOG3378|consen  344 LSECDIYMLGPNNYMRFVKQELVKLGVEPNKVQSE  378 (385)
T ss_pred             hhhCceeeeCcHHHHHHHHHHHHHhcCCccceecc
Confidence            3468999999999999  88889999999987765

>PRK09908 xanthine dehydrogenase subunit XdhC; Provisional

Probab=90.70  E-value=0.27  Score=36.79  Aligned_cols=37  Identities=16%  Similarity=0.388  Sum_probs=28.5

Q ss_pred             CCCCch--HHHHHHcCC-CcCCCCCCcccCCCeeeeeeccc
Q 045945           45 GLKSSS--FKVSAMAVY-KLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        45 ~~~~~~--L~a~~~~Gi-~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      .++++.  |+.++..|+ ....+|+.|.||.|-|.| +|..
T Consensus        21 ~~~~~~~Ll~~LR~~gltgtK~GC~~G~CGACtVlv-dg~~   60 (159)
T PRK09908         21 HAAPGTPLSELLREQGLLSVKQGCCVGECGACTVLV-DGTA   60 (159)
T ss_pred             ecCCCCcHHHHHHHcCCCCCCCCcCCCCCCCcEEEE-CCcE
Confidence            445555  777777775 699999999999999976 6653

>TIGR03224 benzo_boxA benzoyl-CoA oxygenase/reductase, BoxA protein

Probab=89.87  E-value=0.28  Score=41.25  Aligned_cols=14  Identities=0%  Similarity=-0.016  Sum_probs=12.7

Q ss_pred             CCeeEEcCChhhhh
Q 045945           24 MKFPLVKSPGSLVS   37 (122)
Q Consensus        24 ~~~~YvCGP~~fm~   37 (122)
                      +.++|+|||.+|++
T Consensus       363 ~~~vYiCGp~~M~~  376 (411)
T TIGR03224       363 NTYIYICGLKGMEE  376 (411)
T ss_pred             CcEEEEECCHHHHH
Confidence            47899999999987

Members of this protein family are BoxA, the A component of the BoxAB benzoyl-CoA oxygenase/reductase. This oxygen-requiring enzyme acts in an aerobic pathway of benzoate catabolism via coenzyme A ligation. BoxA is a homodimeric iron-sulphur-flavoprotein and acts as an NADPH-dependent reductase for BoxB.

>KOG3049 consensus Succinate dehydrogenase, Fe-S protein subunit [Energy production and conversion]

Probab=88.58  E-value=0.17  Score=40.26  Aligned_cols=52  Identities=15%  Similarity=0.289  Sum_probs=34.5

Q ss_pred             eeEEcCChhhhhHhHHHHcCCCCch-----HHHHHH------cCCCcCCCCCCcccCCCeeee
Q 045945           26 FPLVKSPGSLVSRSVSKAFGLKSSS-----FKVSAM------AVYKLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        26 ~~YvCGP~~fm~~~~~~~~~~~~~~-----L~a~~~------~Gi~i~~~Cr~G~CGtCkv~v   77 (122)
                      +||---|+.=.++..++.++|.-..     |++++.      --+.+..+||.|+||+|...+
T Consensus        50 eIYRwnPd~pg~kP~~Q~y~vDL~~CGpMvLDALiKIKnE~DptLTFRRSCREGICGSCAMNI  112 (288)
T KOG3049|consen   50 EIYRWNPDNPGDKPHLQTYEVDLNDCGPMVLDALIKIKNEMDPTLTFRRSCREGICGSCAMNI  112 (288)
T ss_pred             EEEecCCCCCCCCccceeeeecHHhcchHHHHHHHHhhcccCCceehhhhhhccccccceecc
Confidence            5677666554443333455554433     777754      345588999999999999876

>cd06207 CyPoR_like NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=87.91  E-value=0.28  Score=40.48  Aligned_cols=24  Identities=8%  Similarity=-0.101  Sum_probs=18.4

Q ss_pred             CeeEEcCChh-hhh--HhHHHHcCCCC
Q 045945           25 KFPLVKSPGS-LVS--RSVSKAFGLKS   48 (122)
Q Consensus        25 ~~~YvCGP~~-fm~--~~~~~~~~~~~   48 (122)
                      +++|+|||.+ |++  .+++.+++...
T Consensus       330 ~~vYvCG~~~~M~~~V~~~L~~~~~~~  356 (382)
T cd06207         330 GVIYVCGSTWKMPPDVQEAFEEILKKH  356 (382)
T ss_pred             CEEEEECCcccccHHHHHHHHHHHHHh
Confidence            5899999998 998  66666665543

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced fe

>cd06202 Nitric_oxide_synthase The ferredoxin-reductase (FNR) like C-terminal domain of the nitric oxide synthase (NOS) fuses with a heme-containing N-terminal oxidase domain

Probab=87.85  E-value=0.34  Score=40.49  Aligned_cols=16  Identities=6%  Similarity=-0.112  Sum_probs=13.8

Q ss_pred             CCCCeeEEcCChhhhh
Q 045945           22 TRMKFPLVKSPGSLVS   37 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~   37 (122)
                      ..++++|+|||..|++
T Consensus       348 ~~~~~iYvCG~~~M~~  363 (406)
T cd06202         348 REGGHIYVCGDVTMAE  363 (406)
T ss_pred             hCCCEEEEeCCCchHH
Confidence            3578999999999987

The reductase portion is similar in structure to NADPH dependent cytochrome-450 reductase (CYPOR), having an inserted connecting sub-domain within the FAD binding portion of FNR. NOS differs from CYPOR in a requirement for the cofactor tetrahydrobiopterin and unlike most CYPOR is dimeric. Nitric oxide synthase produces nitric oxide in the conversion of L-arginine to L-citruline. NOS has been implicated in a variety of processes including cytotoxicity, anti-inflamation, neurotransmission, and vascular smooth muscle relaxation.

>PTZ00274 cytochrome b5 reductase; Provisional

Probab=87.62  E-value=0.34  Score=39.62  Aligned_cols=13  Identities=23%  Similarity=0.473  Sum_probs=12.2

Q ss_pred             CeeEEcCChhhhh
Q 045945           25 KFPLVKSPGSLVS   37 (122)
Q Consensus        25 ~~~YvCGP~~fm~   37 (122)
                      .++|+|||.+||+
T Consensus       264 ~~vylCGPp~Mm~  276 (325)
T PTZ00274        264 KIIMLCGPDQLLN  276 (325)
T ss_pred             cEEEEeCCHHHHH
Confidence            5799999999999

>PF08030 NAD_binding_6: Ferric reductase NAD binding domain; InterPro: IPR013121 This entry contains ferric reductase NAD binding proteins

Probab=87.57  E-value=0.38  Score=33.91  Aligned_cols=18  Identities=22%  Similarity=0.207  Sum_probs=13.7

Q ss_pred             CCCCCCeeEEcCChhhhh
Q 045945           20 APTRMKFPLVKSPGSLVS   37 (122)
Q Consensus        20 ~~~~~~~~YvCGP~~fm~   37 (122)
                      ......-+|+|||.+|++
T Consensus       132 ~~~~~~~V~~CGP~~m~~  149 (156)
T PF08030_consen  132 QSSGRVAVFVCGPPSMVD  149 (156)
T ss_dssp             STT-EEEEEEES-HHHHH
T ss_pred             CCCCcEEEEEcCcHHHHH
Confidence            455678899999999998

; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3A1F_A.

>COG0543 UbiB 2-polyprenylphenol hydroxylase and related flavodoxin oxidoreductases [Coenzyme metabolism / Energy production and conversion]

Probab=87.23  E-value=0.61  Score=36.51  Aligned_cols=27  Identities=22%  Similarity=0.346  Sum_probs=22.5

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS   49 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~   49 (122)
                      ...++|+|||.+||+  .+.+...+++..
T Consensus       191 ~~~~v~~cGp~~M~~~v~~~~~~~g~~~~  219 (252)
T COG0543         191 EVDDVYICGPPAMVKAVREKLKEYGVPIS  219 (252)
T ss_pred             cCCEEEEECCHHHHHHHHHHHHhcCCchh
Confidence            568999999999999  777777777654

>TIGR03193 4hydroxCoAred 4-hydroxybenzoyl-CoA reductase, gamma subunit

Probab=87.15  E-value=0.69  Score=34.24  Aligned_cols=37  Identities=16%  Similarity=0.311  Sum_probs=26.5

Q ss_pred             cCCCCch--HHHHHHc-C-CCcCCCCCCcccCCCeeeeeecc
Q 045945           44 FGLKSSS--FKVSAMA-V-YKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~-G-i~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      +.++++.  |+.++.. | ..+..+|+.|.||+|-|.| +|+
T Consensus        13 ~~~~~~~~Ll~~LR~~lgltg~K~gC~~G~CGACtVlv-dg~   53 (148)
T TIGR03193        13 DAVADNMLLVDYLRDTVGLTGTKQGCDGGECGACTVLV-DGR   53 (148)
T ss_pred             eecCCCCcHHHHHHHhcCCCCCCCCCCCCCCCCCEEEE-CCe
Confidence            3455554  6666542 4 4588999999999999977 664

4-hydroxybenzoyl-CoA reductase converts 4-hydroxybenzoyl-CoA to benzoyl-CoA, a common intermediate in the degradation of aromatic compounds. This protein family represents the gamma chain of this three-subunit enzyme.

>cd06204 CYPOR NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases

Probab=84.27  E-value=0.62  Score=39.07  Aligned_cols=20  Identities=5%  Similarity=-0.016  Sum_probs=14.6

Q ss_pred             CCCeeEEcCChh-hhh--HhHHH
Q 045945           23 RMKFPLVKSPGS-LVS--RSVSK   42 (122)
Q Consensus        23 ~~~~~YvCGP~~-fm~--~~~~~   42 (122)
                      .++++|+|||.+ |++  .++++
T Consensus       362 ~~~~vYvCGp~~~M~~~V~~~L~  384 (416)
T cd06204         362 EGAYIYVCGDAKNMARDVEKTLL  384 (416)
T ss_pred             cCCEEEEECCcccchHHHHHHHH
Confidence            468999999998 666  44443

CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme that catalyzes the reversible electron transfer between NADP(H) and electron carrier proteins such as ferredoxin and flavodoxin. Isoforms of these flavoproteins (i.e. having a non-covalently bound FAD as a prosthetic group) are present in chloroplasts, mitochondria, and bacteria in which they participate in a wide variety of redox metabolic pathways. The C-terminal domain contains most of the NADP(H) binding residues and the N-terminal domain interacts non-covalently with the isoalloxazine rings of the flavin molecule which lies largely in a large gap betweed the two domains. Ferredoxin-NADP+ reductase first accepts one electron from reduced ferredo

>COG2871 NqrF Na+-transporting NADH:ubiquinone oxidoreductase, subunit NqrF [Energy production and conversion]

Probab=84.09  E-value=0.72  Score=38.39  Aligned_cols=29  Identities=10%  Similarity=0.061  Sum_probs=25.0

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCch
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS   50 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~   50 (122)
                      +.+..+|+|||.-|.+  -.+++++||..+.
T Consensus       372 PEDceyYmCGPp~mNasvikmL~dlGVE~en  402 (410)
T COG2871         372 PEDCEYYMCGPPLMNASVIKMLKDLGVEREN  402 (410)
T ss_pred             chheeEEeeCcchhhHHHHHHHHhcCccccc
Confidence            3489999999988877  8899999999876

>PRK06214 sulfite reductase; Provisional

Probab=83.24  E-value=0.91  Score=39.74  Aligned_cols=15  Identities=7%  Similarity=-0.130  Sum_probs=12.8

Q ss_pred             CCCeeEEcCChhhhh
Q 045945           23 RMKFPLVKSPGSLVS   37 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~   37 (122)
                      .++++|+|||..+|.
T Consensus       476 ~~a~iYVCGp~~~M~  490 (530)
T PRK06214        476 EGAHFYVCGDAKRMA  490 (530)
T ss_pred             CCcEEEEeCChHHHH
Confidence            478999999998883

>cd06199 SiR Cytochrome p450- like alpha subunits of E

Probab=82.86  E-value=0.71  Score=37.90  Aligned_cols=15  Identities=7%  Similarity=-0.082  Sum_probs=12.4

Q ss_pred             CCCeeEEcCCh-hhhh
Q 045945           23 RMKFPLVKSPG-SLVS   37 (122)
Q Consensus        23 ~~~~~YvCGP~-~fm~   37 (122)
                      .++++|+|||. .|+.
T Consensus       306 ~~~~vYvCG~~~~M~~  321 (360)
T cd06199         306 EGAHFYVCGDAKRMAK  321 (360)
T ss_pred             CCCEEEEECCCccccH
Confidence            46899999999 6766

coli sulfite reductase (SiR) multimerize with beta subunits to catalyze the NADPH dependent reduction of sulfite to sulfide. Beta subunits have an Fe4S4 cluster and a siroheme, while the alpha subunits (cysJ gene) are of the cytochrome p450 (CyPor) family having FAD and FMN as prosthetic groups and utilizing NADPH. Cypor (including cyt -450 reductase, nitric oxide synthase, and methionine synthase reductase) are ferredoxin reductase (FNR)-like proteins with an additional N-terminal FMN domain and a connecting sub-domain inserted within the flavin binding portion of the FNR-like domain. The connecting domain orients the N-terminal FMN domain with the C-terminal FNR domain.

>cd06203 methionine_synthase_red Human methionine synthase reductase (MSR) restores methionine sythase which is responsible for the regeneration of methionine from homocysteine, as well as the coversion of methyltetrahydrofolate to tetrahydrofolate

Probab=82.17  E-value=1.5  Score=36.56  Aligned_cols=14  Identities=7%  Similarity=-0.249  Sum_probs=11.0

Q ss_pred             CCCeeEEcCChhhh
Q 045945           23 RMKFPLVKSPGSLV   36 (122)
Q Consensus        23 ~~~~~YvCGP~~fm   36 (122)
                      .++++|+|||...|
T Consensus       344 ~~~~iYvCG~~~~M  357 (398)
T cd06203         344 SNAKIYVCGDAKGM  357 (398)
T ss_pred             CCcEEEEECCcchh
Confidence            56899999996544

In MSR, electrons are transferred from NADPH to FAD to FMN to cob(II)alamin. MSR resembles proteins of the cytochrome p450 family including nitric oxide synthase, the alpha subunit of sulfite reductase, but contains an extended hinge region. NADPH cytochrome p450 reductase (CYPOR) serves as an electron donor in several oxygenase systems and is a component of nitric oxide synthases and methionine synthase reductases. CYPOR transfers two electrons from NADPH to the heme of cytochrome p450 via FAD and FMN. CYPORs resemble ferredoxin reductase (FNR) but have a connecting subdomain inserted within the flavin binding region, which helps orient the FMN binding doamin with the FNR module. Ferredoxin-NADP+ (oxido)reductase is an FAD-containing enzyme

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	122
3p63_A	96	Structure Of M. Laminosus Ferredoxin With A Shorter		7e-26
1rfk_A	98	Crystal Structure Of 2fe2s Ferredoxin From Thermoph		1e-25
1fxa_A	98	Crystallization And Structure Determination To 2.5-		7e-25
1j7c_A	98	Structure Of The Anabaena Ferredoxin Mutant E95k Le		1e-24
1qog_A	98	Ferredoxin Mutation S47a Length = 98		1e-24
2pvg_C	96	Crystal Srtucture Of The Binary Complex Between Fer		2e-24
1qof_A	98	Ferredoxin Mutation Q70k Length = 98		3e-24
1dox_A	96	1h And 15n Sequential Assignment, Secondary Structu		3e-24
1j7b_A	98	Structure Of The Anabaena Ferredoxin Mutant E94k Le		3e-24
1off_A	97	2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 L		4e-24
1qob_A	98	Ferredoxin Mutation D62k Length = 98		6e-24
1j7a_A	98	Structure Of The Anabaena Ferredoxin D68k Mutant Le		6e-24
1qoa_A	98	Ferredoxin Mutation C49s Length = 98		6e-24
1frr_A	95	Crystal Structure Of [2fe-2s] Ferredoxin I From Equ		7e-24
1roe_A	97	Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elo		2e-23
4fxc_A	98	Tertiary Structure Of [2fe-2s] Ferredoxin From Spir		2e-23
3b2g_A	98	Leptolyngbya Boryana Ferredoxin Length = 98		2e-23
3ab5_A	97	Crystal Structure Of The 2fe 2s Ferredoxin From Cya		3e-23
1wri_A	93	Crystal Structure Of Ferredoxin Isoform Ii From E.		1e-22
1pfd_A	96	The Solution Structure Of High Plant Parsley [2fe-2		2e-22
1gaq_B	98	Crystal Structure Of The Complex Between Ferredoxin		1e-21
3av8_A	97	Refined Structure Of Plant-Type [2fe-2s] Ferredoxin		1e-21
1awd_A	94	Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fu		6e-21
1fxi_A	96	Structure Of The [2fe-2s] Ferredoxin I From The Blu		7e-21
1iue_A	98	Crystal Structure Analysis Of Ferredoxin From Plasm		1e-19
1a70_A	97	Spinach Ferredoxin Length = 97		2e-19
1frd_A	98	Molecular Structure Of The Oxidized, Recombinant, H		8e-12
1doi_A	128	2fe-2s Ferredoxin From Haloarcula Marismortui Lengt		6e-08
1e10_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		2e-07
1e0z_A	128	[2fe-2s]-Ferredoxin From Halobacterium Salinarum Le		2e-07
1krh_A	338	X-Ray Stucture Of Benzoate Dioxygenase Reductase Le		2e-06

>pdb|3P63|A Chain A, Structure Of M. Laminosus Ferredoxin With A Shorter L1,2 Loop Length = 96

Iteration: 1
 Score =  112 bits (279), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 53/90 (58%), Positives = 67/90 (74%), Gaps = 2/90 (2%)
Query: 34  SLVSRSVSKAFGLKSSSFKVSAM--AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLD 91
           +L++ + +K   +    + + A   A   LPYSCRAGACSTCAG ++SG+VDQSD SFLD
Sbjct: 6   TLINPTGNKTIEVPDDQYILDAAEEAGIDLPYSCRAGACSTCAGKLISGTVDQSDQSFLD 65
Query: 92  DNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           D+Q+E GYVLTC+AYP SDCVI THKE EL
Sbjct: 66  DDQIEAGYVLTCVAYPTSDCVIETHKEEEL 95

>pdb|1RFK|A Chain A, Crystal Structure Of 2fe2s Ferredoxin From Thermophilic Cyanobacterium Mastigocladus Laminosus Length = 98

Iteration: 1
 Score =  111 bits (277), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 49/62 (79%), Positives = 55/62 (88%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG ++SG+VDQSD SFLDD+Q+E GYVLTC+AYP SDCVI THKE 
Sbjct: 36  DLPYSCRAGACSTCAGKLISGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCVIETHKEE 95
Query: 120 EL 121
           EL
Sbjct: 96  EL 97

>pdb|1FXA|A Chain A, Crystallization And Structure Determination To 2.5-Angstroms Resolution Of The Oxidized [2fe-2s] Ferredoxin Isolated From Anabaena 7120 Length = 98

Iteration: 1
 Score =  108 bits (270), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|1J7C|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E95k Length = 98

Iteration: 1
 Score =  108 bits (269), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 48/63 (76%), Positives = 55/63 (87%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  KDL 97

>pdb|1QOG|A Chain A, Ferredoxin Mutation S47a Length = 98

Iteration: 1
 Score =  107 bits (268), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGAC+TCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACATCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|2PVG|C Chain C, Crystal Srtucture Of The Binary Complex Between Ferredoxin And Ferredoxin:thioredoxin Reductase Length = 96

Iteration: 1
 Score =  107 bits (266), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 54/62 (87%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
           +LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE 
Sbjct: 34  ELPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 93
Query: 120 EL 121
           +L
Sbjct: 94  DL 95

>pdb|1QOF|A Chain A, Ferredoxin Mutation Q70k Length = 98

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+++E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDKIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|1DOX|A Chain A, 1h And 15n Sequential Assignment, Secondary Structure And Tertiary Fold Of [2fe-2s] Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 96

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE 
Sbjct: 34  DLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 93
Query: 120 EL 121
           +L
Sbjct: 94  DL 95

>pdb|1J7B|A Chain A, Structure Of The Anabaena Ferredoxin Mutant E94k Length = 98

Iteration: 1
 Score =  106 bits (265), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 55/63 (87%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THK+
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKK 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|1OFF|A Chain A, 2fe-2s Ferredoxin From Synechocystis Sp. Pcc 6803 Length = 97

Iteration: 1
 Score =  106 bits (264), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 47/62 (75%), Positives = 53/62 (85%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG + +GSVDQSD SFLDD+Q+E GYVLTC+AYP SDC I THKE 
Sbjct: 35  DLPYSCRAGACSTCAGKITAGSVDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIETHKEE 94
Query: 120 EL 121
           +L
Sbjct: 95  DL 96

>pdb|1QOB|A Chain A, Ferredoxin Mutation D62k Length = 98

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQS  SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSKQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|1J7A|A Chain A, Structure Of The Anabaena Ferredoxin D68k Mutant Length = 98

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLD +Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDKDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|1QOA|A Chain A, Ferredoxin Mutation C49s Length = 98

Iteration: 1
 Score =  105 bits (262), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 47/63 (74%), Positives = 54/63 (85%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACST AG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTSAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94
Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>pdb|1FRR|A Chain A, Crystal Structure Of [2fe-2s] Ferredoxin I From Equisetum Arvense At 1.8 Angstroms Resolution Length = 95

Iteration: 1
 Score =  105 bits (262), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 56/65 (86%)
Query: 57  AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTH 116
           A Y LP+SCRAGACS+C G +VSGSVD+S+GSFLDD QME+G+VLTCIA P+SD VI TH
Sbjct: 30  AGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETH 89
Query: 117 KESEL 121
           KE EL
Sbjct: 90  KEEEL 94

>pdb|1ROE|A Chain A, Nmr Study Of 2fe-2s Ferredoxin Of Synechococcus Elongatus Length = 97

Iteration: 1
 Score =  103 bits (258), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 51/97 (52%), Positives = 65/97 (67%), Gaps = 4/97 (4%)
Query: 25  KFPLVKSPGSLVSRSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQ 84
           K  LV+  GS  +  V +          V+      LP+SCRAGACSTCAG ++ G VDQ
Sbjct: 4   KVTLVRPDGSETTIDVPE----DEYILDVAEEQGLDLPFSCRAGACSTCAGKLLEGEVDQ 59
Query: 85  SDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESEL 121
           SD SFLDD+Q+EKG+VLTC+AYP+SDC I T++E EL
Sbjct: 60  SDQSFLDDDQIEKGFVLTCVAYPRSDCKILTNQEEEL 96

>pdb|4FXC|A Chain A, Tertiary Structure Of [2fe-2s] Ferredoxin From Spirulina Platensis Refined At 2.5 Angstroms Resolution: Structural Comparisons Of Plant-Type Ferredoxins And An Electrostatic Potential Analysis Length = 98

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG + SG++DQSD SFLDD+Q+E GYVLTC+AYP SDC I TH+E 
Sbjct: 36  DLPYSCRAGACSTCAGTITSGTIDQSDQSFLDDDQIEAGYVLTCVAYPTSDCTIKTHQEE 95
Query: 120 EL 121
            L
Sbjct: 96  GL 97

>pdb|3B2G|A Chain A, Leptolyngbya Boryana Ferredoxin Length = 98

Iteration: 1
 Score =  103 bits (257), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 44/62 (70%), Positives = 53/62 (85%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG + +G+VDQSD SFLDD+Q++ GYVLTC+AYP SDC I TH+E 
Sbjct: 36  DLPYSCRAGACSTCAGKITAGTVDQSDQSFLDDDQIQAGYVLTCVAYPTSDCTILTHQEE 95
Query: 120 EL 121
           +L
Sbjct: 96  DL 97

>pdb|3AB5|A Chain A, Crystal Structure Of The 2fe 2s Ferredoxin From Cyanidioschyzon Merolae Length = 97

Iteration: 1
 Score =  103 bits (256), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 45/61 (73%), Positives = 53/61 (86%)
Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAGACSTCAG +V GSVDQSD SFLD++Q+ KG++LTC+AYP SDCVI TH+E  
Sbjct: 36  LPYSCRAGACSTCAGKLVKGSVDQSDQSFLDEDQISKGFILTCVAYPTSDCVIQTHQEEA 95
Query: 121 L 121
           L
Sbjct: 96  L 96

>pdb|1WRI|A Chain A, Crystal Structure Of Ferredoxin Isoform Ii From E. Arvense Length = 93

Iteration: 1
 Score =  101 bits (251), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 46/61 (75%), Positives = 53/61 (86%)
Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LP SC+AGACSTC G +VSG+VDQS+GSFLDD Q+E+GYVLTCIA P+SD VI THKE E
Sbjct: 33  LPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE 92
Query: 121 L 121
           L
Sbjct: 93  L 93

>pdb|1PFD|A Chain A, The Solution Structure Of High Plant Parsley [2fe-2s] Ferredoxin, Nmr, 18 Structures Length = 96

Iteration: 1
 Score =  100 bits (248), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 52/62 (83%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            +PYSCRAG+CS+CAG +VSGS+DQSD SFLDD QM+ GYVLTC AYP SD VI THKE 
Sbjct: 34  DIPYSCRAGSCSSCAGKVVSGSIDQSDQSFLDDEQMDAGYVLTCHAYPTSDVVIETHKEE 93
Query: 120 EL 121
           E+
Sbjct: 94  EI 95

>pdb|1GAQ|B Chain B, Crystal Structure Of The Complex Between Ferredoxin And Ferredoxin-Nadp+ Reductase Length = 98

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/62 (72%), Positives = 51/62 (82%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAG+CS+CAG +VSGSVDQSD S+LDD Q+  G+VLTC AYP SD VI THKE 
Sbjct: 34  DLPYSCRAGSCSSCAGKVVSGSVDQSDQSYLDDGQIADGWVLTCHAYPTSDVVIETHKEE 93
Query: 120 EL 121
           EL
Sbjct: 94  EL 95

>pdb|3AV8|A Chain A, Refined Structure Of Plant-Type [2fe-2s] Ferredoxin I From Aphanothece Sacrum At 1.46 A Resolution Length = 97

Iteration: 1
 Score = 97.8 bits (242), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 51/63 (80%), Gaps = 1/63 (1%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSV-DQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
            LPYSCRAGACSTCAG +VSG   DQSD SFLDD+Q++ GY+LTC+AYP  DCVI THKE
Sbjct: 34  DLPYSCRAGACSTCAGKLVSGPAPDQSDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKE 93
Query: 119 SEL 121
             L
Sbjct: 94  EAL 96

>pdb|1AWD|A Chain A, Ferredoxin [2fe-2s] Oxidized Form From Chlorella Fusca Length = 94

Iteration: 1
 Score = 95.9 bits (237), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 44/61 (72%), Positives = 50/61 (81%)
Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAGACS+CAG + SG VDQSD SFLDD QM KG+VLTC+AYP SD  I TH+E+ 
Sbjct: 33  LPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAA 92
Query: 121 L 121
           L
Sbjct: 93  L 93

>pdb|1FXI|A Chain A, Structure Of The [2fe-2s] Ferredoxin I From The Blue-Green Alga Aphanothece Sacrum At 2.2 Angstroms Resolution Length = 96

Iteration: 1
 Score = 95.5 bits (236), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 42/62 (67%), Positives = 48/62 (77%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
            LPYSCRAGACSTCAG +VSG     D SFLDD+Q++ GY+LTC+AYP  DCVI THKE 
Sbjct: 34  DLPYSCRAGACSTCAGKLVSGPAPDEDQSFLDDDQIQAGYILTCVAYPTGDCVIETHKEE 93
Query: 120 EL 121
            L
Sbjct: 94  AL 95

>pdb|1IUE|A Chain A, Crystal Structure Analysis Of Ferredoxin From Plasmodium Falciparum Length = 98

Iteration: 1
 Score = 91.7 bits (226), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 39/63 (61%), Positives = 48/63 (76%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
           +LPYSCR G+CSTCA  +V G VD  D S+LD+ Q++K Y+L C  YPKSDCVI THKE 
Sbjct: 34  ELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKSDCVIETHKED 93
Query: 120 ELN 122
           EL+
Sbjct: 94  ELH 96

>pdb|1A70|A Chain A, Spinach Ferredoxin Length = 97

Iteration: 1
 Score = 90.5 bits (223), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 39/61 (63%), Positives = 51/61 (83%)
Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAG+CS+CAG + +GS++Q D SFLDD+Q+++G+VLTC AYP SD  I THK+ E
Sbjct: 35  LPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEE 94
Query: 121 L 121
           L
Sbjct: 95  L 95

>pdb|1FRD|A Chain A, Molecular Structure Of The Oxidized, Recombinant, Heterocyst (2fe-2s) Ferredoxin From Anabaena 7120 Determined To 1.7 Angstroms Resolution Length = 98

Iteration: 1
 Score = 65.5 bits (158), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 34/59 (57%), Positives = 45/59 (76%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           +LP+SC +G+CS+C G +V G VDQSD  FLDD QM KG+ L C+ YP+S+C I TH+E
Sbjct: 36  ELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 94

>pdb|1DOI|A Chain A, 2fe-2s Ferredoxin From Haloarcula Marismortui Length = 128

Iteration: 1
 Score = 52.4 bits (124), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQME-KGYVLTCIAYPKSDCV--IYT 115
           Y  P+SCRAGAC+ CA +++ G +D      L D ++E K   LTCI  P +D V  +Y 
Sbjct: 57  YDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYN 116
Query: 116 HK 117
            K
Sbjct: 117 AK 118

>pdb|1E10|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 36/62 (58%), Gaps = 3/62 (4%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYV-LTCIAYPKSDCV--IYT 115
           Y  P+SCRAGAC+ CA ++  G +D      L D ++E+  V LTCI  P +D V  +Y 
Sbjct: 57  YDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGSPAADEVKIVYN 116
Query: 116 HK 117
            K
Sbjct: 117 AK 118

>pdb|1E0Z|A Chain A, [2fe-2s]-Ferredoxin From Halobacterium Salinarum Length = 128

Iteration: 1
 Score = 51.2 bits (121), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 25/65 (38%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYV-LTCIAYPKSDCVIYTHK 117
           Y  P+SCRAGAC+ CA ++  G +D      L D ++E+  V LTCI  P +D V   + 
Sbjct: 57  YDWPFSCRAGACANCASIVKEGEIDMDMQQILSDEEVEEKDVRLTCIGSPAADEVKIVYN 116
Query: 118 ESELN 122
              L+
Sbjct: 117 AXHLD 121

>pdb|1KRH|A Chain A, X-Ray Stucture Of Benzoate Dioxygenase Reductase Length = 338

Iteration: 1
 Score = 47.4 bits (111), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 4/66 (6%)
Query: 60  KLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDD----NQMEKGYVLTCIAYPKSDCVIYT 115
            +P  CR G C TC     SG+ D  + ++++D     + ++GYVL C   P SD V   
Sbjct: 36  NIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQI 95
Query: 116 HKESEL 121
              SE+
Sbjct: 96  QASSEV 101

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	122
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	5e-37
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	6e-37
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	6e-37
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	1e-36
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	2e-36
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	2e-36
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	4e-36
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	2e-33
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	8e-29
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	2e-12
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	5e-12
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	2e-08

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1 Length = 94

 Score =  120 bits (302), Expect = 5e-37
 Identities = 44/61 (72%), Positives = 50/61 (81%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAGACS+CAG + SG VDQSD SFLDD QM KG+VLTC+AYP SD  I TH+E+ 
Sbjct: 33  LPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAA 92

Query: 121 L 121
           L
Sbjct: 93  L 93

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1 Length = 98

 Score =  120 bits (302), Expect = 6e-37
 Identities = 39/61 (63%), Positives = 46/61 (75%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCR G+CSTCA  +V G VD  D S+LD+ Q++K Y+L C  YPKSDCVI THKE E
Sbjct: 35  LPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDE 94

Query: 121 L 121
           L
Sbjct: 95  L 95

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1 Length = 93

 Score =  120 bits (302), Expect = 6e-37
 Identities = 46/61 (75%), Positives = 53/61 (86%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LP SC+AGACSTC G +VSG+VDQS+GSFLDD Q+E+GYVLTCIA P+SD VI THKE E
Sbjct: 33  LPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE 92

Query: 121 L 121
           L
Sbjct: 93  L 93

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A Length = 97

 Score =  119 bits (301), Expect = 1e-36
 Identities = 39/61 (63%), Positives = 51/61 (83%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LPYSCRAG+CS+CAG + +GS++Q D SFLDD+Q+++G+VLTC AYP SD  I THK+ E
Sbjct: 35  LPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEE 94

Query: 121 L 121
           L
Sbjct: 95  L 95

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1 Length = 95

 Score =  118 bits (298), Expect = 2e-36
 Identities = 46/61 (75%), Positives = 54/61 (88%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LP+SCRAGACS+C G +VSGSVD+S+GSFLDD QME+G+VLTCIA P+SD VI THKE E
Sbjct: 34  LPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEE 93

Query: 121 L 121
           L
Sbjct: 94  L 94

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1 Length = 98

 Score =  118 bits (298), Expect = 2e-36
 Identities = 35/61 (57%), Positives = 45/61 (73%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LP+SC +G+CS+C G +V G VDQSD  FLDD QM KG+ L C+ YP+S+C I TH+E  
Sbjct: 37  LPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPY 96

Query: 121 L 121
           L
Sbjct: 97  L 97

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ... Length = 98

 Score =  118 bits (297), Expect = 4e-36
 Identities = 47/61 (77%), Positives = 54/61 (88%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE 120
           LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE +
Sbjct: 37  LPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEED 96

Query: 121 L 121
           L
Sbjct: 97  L 97

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A Length = 128

 Score =  112 bits (281), Expect = 2e-33
 Identities = 24/63 (38%), Positives = 35/63 (55%), Gaps = 1/63 (1%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYV-LTCIAYPKSDCVIYTHKES 119
            P+SCRAGAC+ CA +++ G +D      L D ++E   V LTCI  P +D V   +   
Sbjct: 59  WPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNAK 118

Query: 120 ELN 122
            L+
Sbjct: 119 HLD 121

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2 Length = 98

 Score = 99.7 bits (249), Expect = 8e-29
 Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSF--LDDNQMEKGYVLTCIAYPKSDCVI---YT 115
           L  SCR G C+TC  L   G  D    S   L   + E+G VL C  YPK+D  I   YT
Sbjct: 38  LMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYT 97

Query: 116 H 116
           H
Sbjct: 98  H 98

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 338

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 22/67 (32%), Positives = 31/67 (46%), Gaps = 4/67 (5%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSF----LDDNQMEKGYVLTCIAYPKSDCVIY 114
             +P  CR G C TC     SG+ D  + ++    L   + ++GYVL C   P SD V  
Sbjct: 35  INIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQ 94

Query: 115 THKESEL 121
               SE+
Sbjct: 95  IQASSEV 101

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans} Length = 631

 Score = 60.2 bits (145), Expect = 5e-12
 Identities = 20/62 (32%), Positives = 28/62 (45%), Gaps = 1/62 (1%)

Query: 61  LPYSCR-AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES 119
           +   C  AG C  C   +V G         L   ++ +GYVL C  YP+SD +I    +S
Sbjct: 34  IKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFDS 93

Query: 120 EL 121
            L
Sbjct: 94  RL 95

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2 Length = 321

 Score = 49.5 bits (119), Expect = 2e-08
 Identities = 15/52 (28%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCV 112
           +P SC +G C +C   + SG  D  D   L D++     ++ C++  KS  +
Sbjct: 268 VPSSCESGTCGSCKTALCSGEADHRD-MVLRDDEKG-TQIMVCVSRAKSAEL 317

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	122
2pia_A	321	Phthalate dioxygenase reductase; HET: FMN; 2.00A {	99.87
1awd_A	94	Ferredoxin; electron transport, eukaryotic, green	99.83
1czp_A	98	Ferredoxin I; [2Fe-2S] protein, crystal reduced wi	99.83
1frd_A	98	Heterocyst [2Fe-2S] ferredoxin; electron transport	99.83
1frr_A	95	Ferredoxin I; electron transfer(iron-sulfur protei	99.82
1a70_A	97	Ferredoxin; iron-sulfur protein, photosynthesis, e	99.82
1wri_A	93	Ferredoxin II, ferredoxin; electron transport; 1.2	99.82
1iue_A	98	Ferredoxin; electron transport, iron-sulfur; 1.70A	99.81
1jq4_A	98	Methane monooxygenase component C; [2Fe-2S] ferred	99.75
1doi_A	128	2Fe-2S ferredoxin; halophilic protein, redox prote	99.74
3lxf_A	104	Ferredoxin; iron, iron-sulfur, metal-binding, meta	99.71
3ah7_A	113	[2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur	99.7
1b9r_A	105	Protein (terpredoxin); structure from molmol, ferr	99.68
1xlq_A	106	Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidored	99.68
1uwm_A	106	Ferredoxin VI, FDVI; electron transport, metal-bin	99.67
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	99.67
2wlb_A	103	ETP1-FD, electron transfer protein 1, mitochondria	99.67
1i7h_A	111	Ferredoxin; 2Fe-2S,electron transport; 1.70A {Esch	99.66
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	99.65
2y5c_A	109	Adrenodoxin-like protein, mitochondrial; electron	99.64
3hui_A	126	Ferredoxin; cytochrome P450, electron transfer, ir	99.64
2bt6_A	108	Adrenodoxin 1; ruthenium(II) bipyridyl complex, in	99.6
1l5p_A	93	Ferredoxin; [2Fe-2S] cluster, electron transfer, i	99.57
3n9z_C	123	Adrenodoxin; cytochrome P450, 22-hydroxycholestero	99.38
1ep3_B	262	Dihydroorotate dehydrogenase B (PYRK subunit); het	97.95
3i9v_3	783	NADH-quinone oxidoreductase subunit 3; electron tr	97.71
1kf6_B	243	Fumarate reductase iron-sulfur protein; respiratio	97.41
2bs2_B	241	Quinol-fumarate reductase iron-sulfur subunit B; 2	97.4
1qfj_A	232	Protein (flavin reductase); riboflavin, ferredoxin	97.25
1t3q_A	168	Quinoline 2-oxidoreductase small subunit; QOR, mol	97.15
3c8y_A	574	Iron hydrogenase 1; dithiomethylether, H-cluster,	97.02
2eix_A	243	NADH-cytochrome B5 reductase; flavoprotein, FAD-bi	96.97
3lrx_A	158	Putative hydrogenase; alpha-beta protein, structur	96.96
2wdq_B	238	Succinate dehydrogenase iron-sulfur subunit; succi	96.95
2gpj_A	252	Siderophore-interacting protein; structural genomi	96.95
3lyu_A	142	Putative hydrogenase; the C-terminal has AN alpha-	96.94
4eh1_A	243	Flavohemoprotein; structural genomics, niaid, nati	96.92
1tvc_A	250	Methane monooxygenase component C, methane monooxy	96.9
2r6h_A	290	NADH:ubiquinone oxidoreductase, Na translocating,	96.79
1cqx_A	403	Flavohemoprotein; globin fold, six-stranded antipa	96.74
1fdr_A	248	Flavodoxin reductase; ferredoxin reductase, flavin	96.7
1gvh_A	396	Flavohemoprotein; oxidoreductase, NADP, heme, flav	96.61
2h88_B	252	Succinate dehydrogenase IP subunit; complex II, me	96.6
4g1v_A	399	Flavohemoglobin; three domains: globin fold, antip	96.55
4fk8_A	271	Ferredoxin--NADP reductase; ssgcid, NIH, niaid, st	96.54
1umk_A	275	B5R, NADH-cytochrome B5 reductase; flavoprotein, b	96.52
2bgi_A	272	Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxi	96.48
2qdx_A	257	Ferredoxin reductase; oxidoreductase; HET: FAD; 1.	96.38
2cnd_A	270	NADH-dependent nitrate reductase; nitrate assimila	96.32
3a1f_A	186	Cytochrome B-245 heavy chain; GP91(PHOX), NADPH bi	96.22
1krh_A	338	Benzoate 1,2-dioxygenase reductase; alpha-beta, FA	96.05
3jqq_A	316	Ferredoxin NADP reductase; FAD, oxidoreductase; HE	95.09
2bmw_A	304	Ferredoxin--NADP reductase; oxidoreductase, flavop	95.08
2b5o_A	402	FNR, ferredoxin--NADP reductase; complex with FAD,	94.97
1fnb_A	314	Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(	94.75
3hrd_D	160	Nicotinate dehydrogenase small FES subunit; seleni	94.52
3vo2_A	310	Putative uncharacterized protein; rossmann fold, o	94.27
3lo8_A	311	Ferredoxin--NADP reductase; electron transport, ox	93.87
1ffv_A	163	CUTS, iron-sulfur protein of carbon monoxide dehyd	93.84
1n62_A	166	Carbon monoxide dehydrogenase small chain; CODH, m	93.68
1f20_A	435	Nitric-oxide synthase; nitric-xoide synthase, redu	93.65
1tll_A	688	Nitric-oxide synthase, brain; reductase module, FM	93.06
1rm6_C	161	4-hydroxybenzoyl-COA reductase gamma subunit; xant	92.81
4dql_A	393	Bifunctional P-450/NADPH-P450 reductase; rossmann	91.93
2rc5_A	314	Ferredoxin-NADP reductase; FAD, oxidoreductase; HE	91.08
3vr8_B	282	Iron-sulfur subunit of succinate dehydrogenase; me	90.74
1ddg_A	374	Sulfite reductase (NADPH) flavoprotein alpha- comp	88.22
2k02_A	87	Ferrous iron transport protein C; FEOC, iron-sulfu	88.0
3nvw_A	164	Xanthine dehydrogenase/oxidase; hydroxylase, homod	87.0
2qtl_A	539	MSR;, methionine synthase reductase; alpha-beta-al	85.66
1xn7_A	78	Hypothetical protein YHGG; alpha+beta, GFT structu	84.65
2w3s_A	462	Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2	84.07
2bpo_A	682	CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-	82.97
3qe2_A	618	CPR, P450R, NADPH--cytochrome P450 reductase; cypo	80.43

>2pia_A Phthalate dioxygenase reductase; HET: FMN; 2.00A {Burkholderia cepacia} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.87  E-value=1.6e-22  Score=159.94  Aligned_cols=92  Identities=25%  Similarity=0.504  Sum_probs=77.5

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHH----------cCCC------------------------Cch--HHHHHHcCCCcCC
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKA----------FGLK------------------------SSS--FKVSAMAVYKLPY   63 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~----------~~~~------------------------~~~--L~a~~~~Gi~i~~   63 (122)
                      +.+.++|+|||.+||+  ++++++          |+.+                        +++  |++++++|+++||
T Consensus       191 ~~~~~vyvCGP~~m~~~v~~~l~~~~~~~i~~E~F~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~ll~a~~~~g~~~~~  270 (321)
T 2pia_A          191 KPAQHVYCCGPQALMDTVRDMTGHWPSGTVHFESFGATNTNARENTPFTVRLSRSGTSFEIPANRSILEVLRDANVRVPS  270 (321)
T ss_dssp             CTTEEEEEESCHHHHHHHHHHTTTSCTTCEEEECCCCCCCCCSCCCCEEEEETTTCCEEEECTTSCHHHHHHHTTCCCCC
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHhCCHhhEEEEecCCCCCCCCCCccEEEEEeCCCeEEEECCCCcHHHHHHHcCCCCCC
Confidence            4578999999999999  555442          2211                        111  8889999999999


Q ss_pred             CCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCC-eEEEe
Q 045945           64 SCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSD-CVIYT  115 (122)
Q Consensus        64 ~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sd-l~I~l  115 (122)
                      +|+.|.||+|+++|++|++++.+ ..|+++|+ +|++|+||++|.+| ++|++
T Consensus       271 ~C~~G~Cg~C~~~v~~G~~~~~~-~~l~~~e~-~g~~L~C~~~~~~d~~~i~l  321 (321)
T 2pia_A          271 SCESGTCGSCKTALCSGEADHRD-MVLRDDEK-GTQIMVCVSRAKSAELVLDL  321 (321)
T ss_dssp             SCSSSSSCTTEEEEEESCEECCC-SSCCTTTT-TTEEETTTCEESSSEEEECC
T ss_pred             CCCCCCCCCCEEEEecCcccccc-CCCChHHH-CCeEEEeEeEECCCcEEEeC
Confidence            99999999999999999999887 68999998 99999999999998 88864

>1awd_A Ferredoxin; electron transport, eukaryotic, green ALGA, electron transfer, metalloprotein; 1.40A {'chlorella' fusca} SCOP: d.15.4.1

Probab=99.83  E-value=4.4e-21  Score=128.77  Aligned_cols=79  Identities=57%  Similarity=0.952  Sum_probs=71.9

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+.+|++|+.|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++++.
T Consensus        13 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~d~~i~~~~~~~   92 (94)
T 1awd_A           13 TIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEAA   92 (94)
T ss_dssp             EEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSCEEEECCCGGG
T ss_pred             EEEECCCCcHHHHHHHcCCCCCcCCCCCcCCCCEEEEEeCCcCccccccCCHHHHhCCcEEeeECEECCCEEEEecchhc
Confidence            45566666  9999999999999999999999999999999998887789999999999999999999999999998775


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      +
T Consensus        93 ~   93 (94)
T 1awd_A           93 L   93 (94)
T ss_dssp             G
T ss_pred             c
Confidence            4

>1czp_A Ferredoxin I; [2Fe-2S] protein, crystal reduced with dithionite, electron; 1.17A {Nostoc SP} SCOP: d.15.4.1 PDB: 1ewy_C* 1fxa_A 1qt9_A 1qog_A 1j7c_A 1j7b_A 1qof_A 1qob_A 1j7a_A 1qoa_A 1rfk_A 3p63_A 4fxc_A 3ab5_A 1roe_A 2cjn_A 2cjo_A 1off_A 1dox_A 1doy_A ...

Probab=99.83  E-value=6.1e-21  Score=128.95  Aligned_cols=79  Identities=61%  Similarity=1.046  Sum_probs=71.6

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+++|++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++|.+|++|++++++.
T Consensus        17 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~d~~v~~~~~~~   96 (98)
T 1czp_A           17 EIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEED   96 (98)
T ss_dssp             EEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSCEEEECCCTTT
T ss_pred             EEEeCCCCCHHHHHHHcCCCccCCCCCCCCCCCeEEEccCCcCccccccCCHHHhhCCeEEeeeCEECCCEEEEeccccc
Confidence            44555555  9999999999999999999999999999999998887789999999999999999999999999998877


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      |
T Consensus        97 ~   97 (98)
T 1czp_A           97 L   97 (98)
T ss_dssp             T
T ss_pred             c
Confidence            5

>1frd_A Heterocyst [2Fe-2S] ferredoxin; electron transport; 1.70A {Nostoc SP} SCOP: d.15.4.1

Probab=99.83  E-value=5.8e-21  Score=128.74  Aligned_cols=79  Identities=44%  Similarity=0.889  Sum_probs=71.9

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+++||+|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++|.+|++|++++++.
T Consensus        17 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaC~~~~~~d~~v~~~~~~~   96 (98)
T 1frd_A           17 TIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEPY   96 (98)
T ss_dssp             EEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEESSSEEEECCCGGG
T ss_pred             EEEeCCCCcHHHHHHHcCCCcccCCCCCCCCCCEEEEEeCCccccccccCCHHHhhCCcEEEeECEECCCEEEEecchhh
Confidence            44556665  9999999999999999999999999999999998887899999999999999999999999999998876


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      |
T Consensus        97 ~   97 (98)
T 1frd_A           97 L   97 (98)
T ss_dssp             C
T ss_pred             c
Confidence            5

>1frr_A Ferredoxin I; electron transfer(iron-sulfur protein); 1.80A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.82  E-value=1e-20  Score=126.57  Aligned_cols=79  Identities=61%  Similarity=1.031  Sum_probs=71.6

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+++|++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||+++.+|++|++++++.
T Consensus        14 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~~~L~~~~~~~g~~LaC~~~~~~~~~v~~~~~~~   93 (95)
T 1frr_A           14 TLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEE   93 (95)
T ss_dssp             EEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESSCEEEECCCTTT
T ss_pred             EEEeCCCCcHHHHHHHcCCCCCCCCCCcCCCCCEEEEEeCCccccccccCCHHHHhCCcEEeeECEECCCEEEEEcchhh
Confidence            44566666  9999999999999999999999999999999999887889999999999999999999999999988765


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      +
T Consensus        94 ~   94 (95)
T 1frr_A           94 L   94 (95)
T ss_dssp             T
T ss_pred             c
Confidence            4

>1a70_A Ferredoxin; iron-sulfur protein, photosynthesis, electron transport; 1.70A {Spinacia oleracea} SCOP: d.15.4.1 PDB: 1pfd_A

Probab=99.82  E-value=5.5e-21  Score=129.11  Aligned_cols=79  Identities=51%  Similarity=0.911  Sum_probs=70.9

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+++|++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++|.+|++|++++++.
T Consensus        15 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~d~~v~~~~~~~   94 (97)
T 1a70_A           15 EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEE   94 (97)
T ss_dssp             EEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEESSCEEEECCCGGG
T ss_pred             EEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCeEEEccCCcCccccccCCHHHhhCCeEEEeECEECCCEEEEeCchhh
Confidence            34555555  9999999999999999999999999999999998887889998888999999999999999999998765


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      +
T Consensus        95 ~   95 (97)
T 1a70_A           95 L   95 (97)
T ss_dssp             C
T ss_pred             c
Confidence            4

>1wri_A Ferredoxin II, ferredoxin; electron transport; 1.20A {Equisetum arvense} SCOP: d.15.4.1

Probab=99.82  E-value=7.9e-21  Score=127.45  Aligned_cols=78  Identities=60%  Similarity=1.037  Sum_probs=70.8

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++| .+|++|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++|.+|++|+++++++
T Consensus        14 ~~~~~~g~tlL~a~~~~g-~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~~~~~g~~LaCq~~~~~d~~v~~~~~~~   92 (93)
T 1wri_A           14 TFDVEPGERLIDIGSEKA-DLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE   92 (93)
T ss_dssp             EEEECTTSCHHHHHHHHS-CCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESSCEEEECCCGGG
T ss_pred             EEEECCCCcHHHHHHHCc-CCCCCCCCCCCCCCEEEEecCccCccccccCCHHHHhCCcEEeeeCEECCCEEEEeccccc
Confidence            44566665  99999999 9999999999999999999999998887889999999999999999999999999998876


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      |
T Consensus        93 ~   93 (93)
T 1wri_A           93 L   93 (93)
T ss_dssp             C
T ss_pred             C
Confidence            4

>1iue_A Ferredoxin; electron transport, iron-sulfur; 1.70A {Plasmodium falciparum} SCOP: d.15.4.1

Probab=99.81  E-value=6.1e-21  Score=129.10  Aligned_cols=78  Identities=50%  Similarity=0.921  Sum_probs=70.0

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|+++|++|+.|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++++.
T Consensus        15 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~e~~~L~~~e~~~g~~LaCq~~~~~d~~i~~~~~~~   94 (98)
T 1iue_A           15 KIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKSDCVIETHKEDE   94 (98)
T ss_dssp             EEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSCEEEECCCHHH
T ss_pred             EEEeCCCCcHHHHHHHcCCCCCCCCCCCcCCCCEEEEeeCCccccccccCCHHHHhCCeEEEeECEECCCeEEEeCChHh
Confidence            34555555  9999999999999999999999999999999998887799999999999999999999999999987653

>1jq4_A Methane monooxygenase component C; [2Fe-2S] ferredoxin, oxidoreductase; NMR {Methylococcus capsulatus str} SCOP: d.15.4.2

Probab=99.75  E-value=9.5e-20  Score=122.91  Aligned_cols=76  Identities=32%  Similarity=0.482  Sum_probs=66.3

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccC--CCCCCCChhcccCCeEEeeceEECCCeEEEecCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQ--SDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE  118 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~--~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~  118 (122)
                      .+.+++++  |++++++|+++|++|+.|.||+|+++|++|++.+  .+...|+++++++|++|+||++|.+|++|+++++
T Consensus        18 ~~~~~~g~tlL~a~~~~gi~i~~~C~~G~Cg~C~v~v~~G~~~~~~~e~~~L~~~~~~~g~~LaCq~~~~~d~~v~~~~~   97 (98)
T 1jq4_A           18 RFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYT   97 (98)
T ss_dssp             EEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTTCCSSCCSEEECSCC
T ss_pred             EEEeCCCChHHHHHHHcCCCCcCCCCCCCCCCCEEEEEcCccccCcccccccCHHHhcCCcEEEeeCEECCCEEEEecCC
Confidence            44555555  8999999999999999999999999999999886  3446899988888999999999999999998753

>1doi_A 2Fe-2S ferredoxin; halophilic protein, redox protein, iron-sulfur, electron transport; 1.90A {Haloarcula marismortui} SCOP: d.15.4.1 PDB: 1e0z_A* 1e10_A

Probab=99.74  E-value=3.1e-18  Score=121.89  Aligned_cols=74  Identities=31%  Similarity=0.674  Sum_probs=65.7

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhc-ccCCeEEeeceEECCC-eEEEec
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQ-MEKGYVLTCIAYPKSD-CVIYTH  116 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e-~~~g~~LaCqs~~~sd-l~I~l~  116 (122)
                      .+.+++++  |++++++|+++|++|+.|.||+|+++|++|++++.+...|++++ +++|++|+||++|.+| ++|++.
T Consensus        39 ~v~v~~g~tlL~aa~~~Gi~i~~~C~~G~CgtC~v~v~~G~v~~~e~~~L~~~e~~~~g~rLaCq~~~~~d~i~i~~~  116 (128)
T 1doi_A           39 SLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYN  116 (128)
T ss_dssp             EEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEEC
T ss_pred             EEEECCCCcHHHHHHHcCCCCccCCCccCCCCCEeEEecCCcCchhhccCCHhHhccCCEEEEEEeEEcCCeEEEEec
Confidence            55677766  99999999999999999999999999999999988777899866 6889999999999999 787754

>3lxf_A Ferredoxin; iron, iron-sulfur, metal-binding, metal protein; 2.30A {Novosphingobium aromaticivorans} SCOP: d.15.4.0

Probab=99.71  E-value=3.5e-18  Score=117.17  Aligned_cols=77  Identities=17%  Similarity=0.221  Sum_probs=65.3

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCCC------CCCCCh-hcccCCeEEeeceEECCC-
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQSD------GSFLDD-NQMEKGYVLTCIAYPKSD-  110 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~~------~~~Ls~-~e~~~g~~LaCqs~~~sd-  110 (122)
                      .+.+++++  |+++.++|++ ++++|+ .|.||+|+++|++|++++..      ...|++ +++++|+||+||+++.+| 
T Consensus        14 ~~~~~~g~tll~a~~~~gi~~i~~~C~G~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~g~rLaCq~~~~~dl   93 (104)
T 3lxf_A           14 EIQAEPGLSLMEALRDAGIDELLALCGGCCSCATCHVLVAPAFADRLPALSGDENDLLDSSDHRTPHSRLSCQITINDKL   93 (104)
T ss_dssp             EEECCTTSBHHHHHHHTTCTTCCCTTCSSSSCSTTEEEECGGGGGGSCCCCHHHHHHHHTSTTCCTTEEEGGGCBCCGGG
T ss_pred             EEEECCCChHHHHHHHcCCCCCCcCCCCCCCCCCCEEEECCcccccCCCCCHHHHHHhccccccCCCcEEEeeCEEccCC
Confidence            45566666  9999999999 999999 99999999999999876532      135666 678889999999999999 


Q ss_pred             --eEEEecCCC
Q 045945          111 --CVIYTHKES  119 (122)
Q Consensus       111 --l~I~l~~~~  119 (122)
                        ++|++++++
T Consensus        94 ~gl~v~ip~~~  104 (104)
T 3lxf_A           94 EGLEVEIAPED  104 (104)
T ss_dssp             TTCEEEECCCC
T ss_pred             CCEEEEecCCC
Confidence              999999764

>3ah7_A [2Fe-2S]ferredoxin; [2Fe-2S] cluster, iron-sulfur cluster biosynthes pseudomonas, metal binding protein; 1.90A {Pseudomonas putida}

Probab=99.70  E-value=9.6e-18  Score=115.75  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=63.6

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCC-----CCCCChh-cccCCeEEeeceEEC-CCeE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSD-----GSFLDDN-QMEKGYVLTCIAYPK-SDCV  112 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~-----~~~Ls~~-e~~~g~~LaCqs~~~-sdl~  112 (122)
                      .+.+++++  |++++++|+++||+|+ .|.||+|+++|++|.+....     ...|+++ ++++|++|+||+++. +|++
T Consensus        18 ~v~~~~g~tlL~aa~~~Gi~i~~~C~g~G~CgtC~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~g~rLaCq~~~~~~dl~   97 (113)
T 3ah7_A           18 TVEVKPGTNILELAHDHHIEMESACGGVKACTTCHCIVRKGFDSLEEADELEEDMLDKAWGLEAQSRLGCQVFVADEDLT   97 (113)
T ss_dssp             EEECCTTCBHHHHHHHTTCCCCCTTCSSSSCSTTEEEEEESGGGSCCCCHHHHHHHTTSTTCCTTEEEGGGCBCCSSCEE
T ss_pred             EEEECCCCcHHHHHHHcCCCCCcCCCCCCCcCCCEEEEcCCcccCCCCCHHHHHhhhcccccCCCcEEeeeCEEeCCCEE
Confidence            55677766  9999999999999998 79999999999999754432     1246654 678899999999998 8999


Q ss_pred             EEecCCC
Q 045945          113 IYTHKES  119 (122)
Q Consensus       113 I~l~~~~  119 (122)
                      |++++++
T Consensus        98 v~~~~~~  104 (113)
T 3ah7_A           98 IEIPKYS  104 (113)
T ss_dssp             EECCSCC
T ss_pred             EEECchh
Confidence            9998754

>1b9r_A Protein (terpredoxin); structure from molmol, ferredoxin; NMR {Pseudomonas SP} SCOP: d.15.4.1

Probab=99.68  E-value=1.6e-18  Score=118.22  Aligned_cols=76  Identities=16%  Similarity=0.323  Sum_probs=62.7

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeecccc------CCCCCCCC--hhcccCCeEEeeceEECC-
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVD------QSDGSFLD--DNQMEKGYVLTCIAYPKS-  109 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~------~~~~~~Ls--~~e~~~g~~LaCqs~~~s-  109 (122)
                      .+.+++++  |++++++|++ ++++|+ .|.||+|+++|++|.++      ..+...|+  +.++++|+||+||+++.+ 
T Consensus        14 ~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~G~~~~l~~~~~~e~~~L~~~~~~~~~g~rLaCq~~~~~~   93 (105)
T 1b9r_A           14 AVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAGTRLSCQVFIDPS   93 (105)
T ss_dssp             EEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTTBSCGGGCCCCTT
T ss_pred             EEEECCCChHHHHHHHcCCCCcCcCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCCcEeeeeCEecCC
Confidence            45667666  9999999999 999999 79999999999999433      22234566  577889999999999999 


Q ss_pred             --CeEEEecCC
Q 045945          110 --DCVIYTHKE  118 (122)
Q Consensus       110 --dl~I~l~~~  118 (122)
                        +++|++++.
T Consensus        94 ~~~l~v~~p~~  104 (105)
T 1b9r_A           94 MDGLIVRVPLP  104 (105)
T ss_dssp             STTEEEECCSC
T ss_pred             CCcEEEEecCC
Confidence              699999764

>1xlq_A Putidaredoxin, PDX; [2Fe-2S], ferredoxin, oxidoreductase; 1.45A {Pseudomonas putida} SCOP: d.15.4.1 PDB: 1xlp_A 1oqr_A 1r7s_A 1pdx_A 1yji_A 1yjj_A 1oqq_A 1xln_A 1xlo_A 3lb8_C* 1put_A 1gpx_A

Probab=99.68  E-value=3.2e-18  Score=116.85  Aligned_cols=77  Identities=12%  Similarity=0.211  Sum_probs=62.3

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCC------CCCCCChhc-c-cCCeEEeeceEECC-
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQS------DGSFLDDNQ-M-EKGYVLTCIAYPKS-  109 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~------~~~~Ls~~e-~-~~g~~LaCqs~~~s-  109 (122)
                      .+.+++|+  |++++++|++ ++++|+ .|.||+|+++|++|.++..      +...|++.+ + ++|++|+||+++.+ 
T Consensus        14 ~~~~~~g~tlLeaa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g~rLaCq~~~~~d   93 (106)
T 1xlq_A           14 ELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPNSRLCCQIIMTPE   93 (106)
T ss_dssp             EEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTTEEEGGGCBCCGG
T ss_pred             EEEECCCCcHHHHHHHcCCCCCCcCCCCCcccCcCEEEECCcccccCCCCCHHHHHHhhcccccCCCCcEeeeeeEeecC
Confidence            45567666  9999999999 999996 8999999999999955432      123566655 6 78999999999999 


Q ss_pred             --CeEEEecCCC
Q 045945          110 --DCVIYTHKES  119 (122)
Q Consensus       110 --dl~I~l~~~~  119 (122)
                        +++|++++.+
T Consensus        94 ~~~l~v~~p~~~  105 (106)
T 1xlq_A           94 LDGIVVDVPDRQ  105 (106)
T ss_dssp             GTTEEEECCSCC
T ss_pred             CCCEEEEecCcc
Confidence              5899998654

>1uwm_A Ferredoxin VI, FDVI; electron transport, metal-binding, iron-sulfur, iron, 2Fe-2S; 2.0A {Rhodobacter capsulatus} SCOP: d.15.4.1 PDB: 1e9m_A

Probab=99.67  E-value=3.6e-18  Score=116.61  Aligned_cols=77  Identities=21%  Similarity=0.238  Sum_probs=63.1

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCCC------CCCCChh-ccc-CCeEEeeceEECC-
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQSD------GSFLDDN-QME-KGYVLTCIAYPKS-  109 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~~------~~~Ls~~-e~~-~g~~LaCqs~~~s-  109 (122)
                      .+.+++++  |++++++|++ ++++|+ .|.||+|+++|++|.+++..      ...|++. +++ +|++|+||+++.+ 
T Consensus        14 ~~~~~~g~tlL~aa~~~gi~~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~e~~~L~~~~~~~~~g~rLaCq~~~~~d   93 (106)
T 1uwm_A           14 EVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPATSRLTCQIKVTSL   93 (106)
T ss_dssp             EEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTTEEEGGGCBCCGG
T ss_pred             EEEECCCCcHHHHHHHcCCCCcccCCCCCCCcCcCEEEECCcccccCCCCCHHHHHHhcCccccCCCCcEecccCEEccC
Confidence            45667766  9999999999 999996 89999999999999655421      2356665 577 8999999999999 


Q ss_pred             --CeEEEecCCC
Q 045945          110 --DCVIYTHKES  119 (122)
Q Consensus       110 --dl~I~l~~~~  119 (122)
                        +++|++++.+
T Consensus        94 ~~~l~v~~p~~~  105 (106)
T 1uwm_A           94 LDGLVVHLPEKQ  105 (106)
T ss_dssp             GTTEEEECCSCC
T ss_pred             CCCEEEEecCCC
Confidence              5899998764

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=99.67  E-value=4.1e-17  Score=141.24  Aligned_cols=80  Identities=28%  Similarity=0.525  Sum_probs=73.2

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE  118 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~  118 (122)
                      +.+.+++++  |++++++|++++|+|+ +|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++.
T Consensus        13 ~~v~v~~G~tLLeAa~~aGi~ip~~C~G~G~CGtC~v~V~~G~v~~~e~~~Ls~~e~~~G~rLaCqa~~~sDl~Ielp~~   92 (631)
T 3zyy_X           13 KEVAISENTNLMEALNLAGINIKTVCGGAGTCGKCLVRVVDGQKRVESYGKLKQEEIAQGYVLACQTYPESDLIIEIPFD   92 (631)
T ss_dssp             EEEEECTTSCHHHHHHHHTCCCCCSCCCSSCCSTTEEEEEESCEEESCCTTCCHHHHHTTEEETTTEEECSSEEEECCTT
T ss_pred             eEEEECCCCcHHHHHHHcCCCCCcCCCCCCcCCCCEEEEeeCcccccccccCCHHHhcCCcEEeeeCEECCCEEEEecch
Confidence            456677776  9999999999999999 9999999999999999998877899999999999999999999999999987


Q ss_pred             CCC
Q 045945          119 SEL  121 (122)
Q Consensus       119 ~~~  121 (122)
                      +++
T Consensus        93 ~~~   95 (631)
T 3zyy_X           93 SRL   95 (631)
T ss_dssp             SSC
T ss_pred             hhh
Confidence            663

>2wlb_A ETP1-FD, electron transfer protein 1, mitochondrial; iron-sulfur, iron, transport, ferredoxin, adrenodoxin-like, electron transport; 2.60A {Schizosaccharomyces pombe}

Probab=99.67  E-value=1e-17  Score=113.74  Aligned_cols=74  Identities=19%  Similarity=0.254  Sum_probs=61.3

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCC------CCCCh-hcccCCeEEeeceEECCC--
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDG------SFLDD-NQMEKGYVLTCIAYPKSD--  110 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~------~~Ls~-~e~~~g~~LaCqs~~~sd--  110 (122)
                      .+.+++++  |++++++|++++++|+ .|.||+|+++|.+|++++...      ..|+. .++++|++|+||+++.+|  
T Consensus        17 ~~~~~~g~tlL~a~~~~gi~i~~~C~g~G~Cg~C~v~v~~g~~~~~~~~~~~E~~~L~~~~~~~~g~rLaCq~~~~~d~~   96 (103)
T 2wlb_A           17 MIEGNEGDSILDLAHANNIDLEGACEGSVACSTCHVIVDPEHYELLDPPEEDEEDMLDLAFGLEETSRLGCQVLLRKDLD   96 (103)
T ss_dssp             EEEECTTCBHHHHHHHTTCCCCCTTTTSSCCSTTEEEECHHHHHHSCCCCHHHHHHHTTBTTCCTTEEEGGGCBCCGGGT
T ss_pred             EEEECCCCHHHHHHHHcCCCcCcCCCCCCCcCCCEEEECCCchhccCCCCHHHHHHHhcccCCCCCcEeeEeeEeCCCCC
Confidence            44556665  9999999999999999 899999999999998876542      14554 357789999999999999  


Q ss_pred             -eEEEec
Q 045945          111 -CVIYTH  116 (122)
Q Consensus       111 -l~I~l~  116 (122)
                       ++|+++
T Consensus        97 ~l~v~lp  103 (103)
T 2wlb_A           97 GIRVRIP  103 (103)
T ss_dssp             TEEEECC
T ss_pred             cEEEEcC
Confidence             999875

>1i7h_A Ferredoxin; 2Fe-2S,electron transport; 1.70A {Escherichia coli} SCOP: d.15.4.1

Probab=99.66  E-value=4.7e-17  Score=112.08  Aligned_cols=77  Identities=21%  Similarity=0.347  Sum_probs=62.2

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCC-----CCChh-cccCCeEEeeceEEC-CCeE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGS-----FLDDN-QMEKGYVLTCIAYPK-SDCV  112 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~-----~Ls~~-e~~~g~~LaCqs~~~-sdl~  112 (122)
                      .+.+++++  |++++++|+.+|++|+ .|.||+|+++|++|.+.+....     .|+.. ++++|++|+||+++. +|++
T Consensus        18 ~~~~~~g~tlL~a~~~~gi~i~~~C~~~G~Cg~C~v~v~~G~~~~~~~~~~e~~~L~~~~~~~~g~rLaCq~~~~~~dl~   97 (111)
T 1i7h_A           18 VLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDLV   97 (111)
T ss_dssp             EEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCBCCSSCEE
T ss_pred             EEEeCCCCcHHHHHHHcCCCCcccCCCCCcCCCCEEEEccCcccCCCCCHHHHHHhhhccccCCCcEEEEEEEEeCCCEE
Confidence            45566666  9999999999999995 9999999999999998876422     23322 456789999999996 8999


Q ss_pred             EEecCCC
Q 045945          113 IYTHKES  119 (122)
Q Consensus       113 I~l~~~~  119 (122)
                      |++++.+
T Consensus        98 v~~~~~~  104 (111)
T 1i7h_A           98 VEIPRYT  104 (111)
T ss_dssp             EECCSCC
T ss_pred             EEEChHH
Confidence            9998643

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=99.65  E-value=1e-16  Score=126.74  Aligned_cols=76  Identities=26%  Similarity=0.507  Sum_probs=67.4

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCC----CCCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQS----DGSFLDDNQMEKGYVLTCIAYPKSDCVIYTH  116 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~----~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~  116 (122)
                      .+.+++++  |++++++|++++++|+.|.||+|+++|++|++.+.    +...|+++++++|++|+||+++.+|++|+++
T Consensus        17 ~~~~~~g~tll~a~~~~gi~i~~~C~~g~Cg~C~v~v~~G~~~~~~~~~~~~~l~~~~~~~g~~LaCq~~~~~~~~v~~~   96 (338)
T 1krh_A           17 FICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQ   96 (338)
T ss_dssp             EEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEESSSEEEEES
T ss_pred             EEEeCCCCcHHHHHHHcCCCcccCCCCcCCCCCEEEEecCcEecccCccccccCCHHHHhCCeEEEEeCEECCCeEEEEe
Confidence            44566666  99999999999999999999999999999998762    4578999999999999999999999999997


Q ss_pred             CC
Q 045945          117 KE  118 (122)
Q Consensus       117 ~~  118 (122)
                      +.
T Consensus        97 ~~   98 (338)
T 1krh_A           97 AS   98 (338)
T ss_dssp             SC
T ss_pred             cc
Confidence            65

>2y5c_A Adrenodoxin-like protein, mitochondrial; electron transport, iron-sulfur cluster biogenesis; 1.70A {Homo sapiens}

Probab=99.64  E-value=1.8e-17  Score=113.81  Aligned_cols=76  Identities=18%  Similarity=0.236  Sum_probs=61.8

Q ss_pred             cCCCCch--HHHHHHcCCCcCCCCCC-cccCCCeeeeeeccccCCC------CCCCCh-hcccCCeEEeeceEECCC---
Q 045945           44 FGLKSSS--FKVSAMAVYKLPYSCRA-GACSTCAGLMVSGSVDQSD------GSFLDD-NQMEKGYVLTCIAYPKSD---  110 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~Gi~i~~~Cr~-G~CGtCkv~vl~G~v~~~~------~~~Ls~-~e~~~g~~LaCqs~~~sd---  110 (122)
                      +.+++|+  |++++++|+++|++|+. |.||+|+++|++|.+++..      ...|+. .++++|+||+||+++.+|   
T Consensus        20 ~~~~~g~tlL~aa~~~gi~i~~~C~g~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~rLaCq~~~~~d~~~   99 (109)
T 2y5c_A           20 VSGRVGDNVLHLAQRHGVDLEGACEASLACSTCHVYVSEDHLDLLPPPEEREDDMLDMAPLLQENSRLGCQIVLTPELEG   99 (109)
T ss_dssp             EEEETTCBHHHHHHHTTCCCCCTTSSSSSCCTTEEEECHHHHTTSCCCCHHHHHHHHTSTTCCTTEEEGGGCBCCGGGTT
T ss_pred             EEECCCCcHHHHHHHcCCCCCcCCCCCcCcCccEEEECCcchhhcCCCCHHHHHHHhccccCCCCcEeeEEeEEecCCCe
Confidence            4455665  99999999999999985 9999999999999766432      124552 567889999999999997   


Q ss_pred             eEEEecCCC
Q 045945          111 CVIYTHKES  119 (122)
Q Consensus       111 l~I~l~~~~  119 (122)
                      ++|++++.+
T Consensus       100 ~~v~ip~~~  108 (109)
T 2y5c_A          100 AEFTLPKIT  108 (109)
T ss_dssp             CEEECCSCC
T ss_pred             EEEEecCCC
Confidence            999998754

>3hui_A Ferredoxin; cytochrome P450, electron transfer, iron, iron-sulfur, metal-binding, electron transport; 2.01A {Rhodopseudomonas palustris}

Probab=99.64  E-value=1.3e-17  Score=118.48  Aligned_cols=77  Identities=14%  Similarity=0.293  Sum_probs=64.1

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCC------CCCCCC-hhcccCCeEEeeceEECCC-
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQS------DGSFLD-DNQMEKGYVLTCIAYPKSD-  110 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~------~~~~Ls-~~e~~~g~~LaCqs~~~sd-  110 (122)
                      .+.+++++  |++++++|++ ++++|+ .|.||+|+++|++|+++..      +...|+ .+++++|+||+||+++.+| 
T Consensus        35 ~v~~~~G~tLL~aa~~~gi~gi~~~C~G~G~CgtC~v~v~~G~~~~l~~~~~~E~~~L~~~~e~~~g~RLaCQ~~~~~dl  114 (126)
T 3hui_A           35 TVEVEEGATVMEAAIRNAIPGVEAECGGACACATCHVYVDEAWREKVGGPSPMEEDMLDFGYDVRPNSRLSCQIKVSNEL  114 (126)
T ss_dssp             EEEEETTSBHHHHHHTTTCTTCCCTTSSSSCCSTTEEEECGGGHHHHCCCCHHHHHHHTTSSSCCTTEEEGGGCBCCGGG
T ss_pred             EEEECCCCcHHHHHHHcCCCCCccCCCCCCCCCCCEEEECCCcccccCCCCHHHhhhcCchhhccCCeEEeeeCEECcCC
Confidence            45556665  9999999999 999998 8999999999999986532      123576 3678889999999999999 


Q ss_pred             --eEEEecCCC
Q 045945          111 --CVIYTHKES  119 (122)
Q Consensus       111 --l~I~l~~~~  119 (122)
                        ++|++++.+
T Consensus       115 dgl~V~lp~~~  125 (126)
T 3hui_A          115 DGLIVTTPERQ  125 (126)
T ss_dssp             TTEEEECCSCC
T ss_pred             CcEEEEecCcC
Confidence              999999875

>2bt6_A Adrenodoxin 1; ruthenium(II) bipyridyl complex, intramolecular electron TRA electron transport, metal-binding; HET: RUA; 1.50A {Bos taurus} SCOP: d.15.4.1 PDB: 1ayf_A 3n9y_C* 2jqr_B* 3na0_C*

Probab=99.60  E-value=1.3e-16  Score=109.28  Aligned_cols=74  Identities=16%  Similarity=0.216  Sum_probs=59.7

Q ss_pred             HcCCCCch--HHHHHHcCCCcC--CCCC-CcccCCCeeeeeeccccCCC------CCCCCh-hcccCCeEEeeceEECC-
Q 045945           43 AFGLKSSS--FKVSAMAVYKLP--YSCR-AGACSTCAGLMVSGSVDQSD------GSFLDD-NQMEKGYVLTCIAYPKS-  109 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~--~~Cr-~G~CGtCkv~vl~G~v~~~~------~~~Ls~-~e~~~g~~LaCqs~~~s-  109 (122)
                      .+.+++|+  |++++++||+++  ++|+ .|.||+|+++|++|.++...      ...|+. .++++|+||+||+++.+ 
T Consensus        20 ~v~~~~g~tLL~aa~~~gi~i~~~~~Cgg~G~CgtC~v~v~~g~~~~l~~~~~~E~~~L~~~~~~~~g~rLaCq~~~~~d   99 (108)
T 2bt6_A           20 TTKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKA   99 (108)
T ss_dssp             EEEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCCTTEEEGGGCBCCGG
T ss_pred             EEEECCCChHHHHHHHcCCCCCcccCCCCCcCcCCCEEEECccccccCCCCCHHHHHHHhCcccCCCCcEeeEEEEecCC
Confidence            44556665  999999999999  9998 59999999999999765432      134654 56788999999999999 


Q ss_pred             --CeEEEec
Q 045945          110 --DCVIYTH  116 (122)
Q Consensus       110 --dl~I~l~  116 (122)
                        +++|+++
T Consensus       100 ~d~~~V~~p  108 (108)
T 2bt6_A          100 MDNMTVRVP  108 (108)
T ss_dssp             GTTEEEECC
T ss_pred             CCCEEEEcC
Confidence              4888875

>1l5p_A Ferredoxin; [2Fe-2S] cluster, electron transfer, iron-sulfur protein, metalloprotein, oxidoreductase; 2.20A {Trichomonas vaginalis} SCOP: d.15.4.1

Probab=99.57  E-value=9.5e-16  Score=102.62  Aligned_cols=67  Identities=22%  Similarity=0.382  Sum_probs=56.3

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCCC---CCCCChhcccCCeEEeeceEECCCe
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQSD---GSFLDDNQMEKGYVLTCIAYPKSDC  111 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~~---~~~Ls~~e~~~g~~LaCqs~~~sdl  111 (122)
                      .+.+++++  |++++++|++ ++++|+ .|.||+|+++|.+|++....   ...|+  ++++|++|+||++|.+|+
T Consensus        13 ~~~~~~g~tll~a~~~~gi~gi~~~C~G~G~Cg~C~v~v~~g~~~~~~~~e~~~L~--~~~~g~rLaCq~~~~~d~   86 (93)
T 1l5p_A           13 QLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFLE--DQPANARLACAITLSGEN   86 (93)
T ss_dssp             EEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHHT--TSCTTEEEGGGCEECGGG
T ss_pred             EEEECCCChHHHHHHHcCCCcCCcCCCCcCCcCCCEEEECCCcCCCCCHHHHHHhc--CCCCCcEEeeECEECCCC
Confidence            45667766  9999999999 999999 99999999999999886443   23465  678899999999999874

>3n9z_C Adrenodoxin; cytochrome P450, 22-hydroxycholesterol, cholesterol SIDE CHA cleavage, structural genomics; HET: HEM HC9; 2.17A {Homo sapiens} SCOP: d.15.4.1 PDB: 3na1_C* 3p1m_A* 1l6u_A 1l6v_A 1e6e_B* 1cje_A

Probab=99.38  E-value=1.3e-14  Score=102.48  Aligned_cols=78  Identities=17%  Similarity=0.200  Sum_probs=18.7

Q ss_pred             HHcCCCCch--HHHHHHcCCCcC--CCCC-CcccCCCeeeeeeccccCCC------CCCCCh-hcccCCeEEeeceEECC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLP--YSCR-AGACSTCAGLMVSGSVDQSD------GSFLDD-NQMEKGYVLTCIAYPKS  109 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~--~~Cr-~G~CGtCkv~vl~G~v~~~~------~~~Ls~-~e~~~g~~LaCqs~~~s  109 (122)
                      +.+.+++|+  |+++.++|++++  +.|+ .|.||+|+++|.+|......      ...|+. .++.+++||+||.++.+
T Consensus        18 ~~v~~~~G~tLl~aa~~~gi~i~g~~~CgG~g~CgtC~v~v~~~~~~~l~~~~~~E~~~L~~~~~~~~~~RLaCQ~~v~~   97 (123)
T 3n9z_C           18 LTTKGKVGDSLLDVVVENNLDIDGFGACEGTLACSTCHLIFEDHIYEKLDAITDEENDMLDLAYGLTDRSRLGCQICLTK   97 (123)
T ss_dssp             -------------------------CTTCSSSSCSTTBC--------------CHHHHHHCC--------CBCC------
T ss_pred             EEEEECCCCcHHHHHHHcCCCCCcCCCCCCCCEeCCCeeEEeccccccCCCCChHHHhhhcccccccCCeEEeeEeEEcc
Confidence            456677776  899999999999  9998 89999999999975433221      123443 45677999999999998


Q ss_pred             ---CeEEEecCCC
Q 045945          110 ---DCVIYTHKES  119 (122)
Q Consensus       110 ---dl~I~l~~~~  119 (122)
                         |++|++|+..
T Consensus        98 ~ld~l~V~ip~~~  110 (123)
T 3n9z_C           98 SMDNMTVRVPETV  110 (123)
T ss_dssp             -------------
T ss_pred             CCCCEEEEECccc
Confidence               7999998764

>1ep3_B Dihydroorotate dehydrogenase B (PYRK subunit); heterotetramer, alpha-beta barrel, beta sandwich, FAD domain alpha/beta NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis} SCOP: b.43.4.2 c.25.1.3 PDB: 1ep1_B* 1ep2_B*

Probab=97.95  E-value=4.9e-06  Score=63.19  Aligned_cols=48  Identities=10%  Similarity=0.135  Sum_probs=38.1

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeee
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMV   78 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl   78 (122)
                      .+.++|+|||.+||+  ++ +++.|++ .++.      +.-...|+.|.||.|.+...
T Consensus       190 ~~~~vyvCGp~~m~~~v~~-l~~~gv~-~~vs------~e~~m~CG~G~C~~C~~~~~  239 (262)
T 1ep3_B          190 EVDALYTCGAPAMLKAVAK-KYDQLER-LYIS------MESRMACGIGACYACVEHDK  239 (262)
T ss_dssp             CCSEEEEESCHHHHHHHHH-HTTTCSS-EEEE------CCCCCSSSSSSSCTTEEEET
T ss_pred             CCCEEEEECCHHHHHHHHH-HHhCCCC-EEEE------ecccccCcccccccCCcccc
Confidence            368999999999999  66 7888887 2232      33567899999999999864

>3i9v_3 NADH-quinone oxidoreductase subunit 3; electron transport, respiratory chain, cell flavoprotein, FMN, iron, iron-sulfur, membrane; HET: FMN; 3.10A {Thermus thermophilus} PDB: 2ybb_3* 2fug_3* 3iam_3* 3ias_3* 3m9s_3*

Probab=97.71  E-value=1.9e-05  Score=69.38  Aligned_cols=75  Identities=16%  Similarity=0.298  Sum_probs=50.6

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCC------CCcccCCCeeeeeeccccCCCCCCCChhc-----ccCCeEEeeceEECC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSC------RAGACSTCAGLMVSGSVDQSDGSFLDDNQ-----MEKGYVLTCIAYPKS  109 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~C------r~G~CGtCkv~vl~G~v~~~~~~~Ls~~e-----~~~g~~LaCqs~~~s  109 (122)
                      .+.+++|.  |+++.++|++||+.|      ..|.|+.|.|+|..+.........++++.     ...+.+++|++.+..
T Consensus        10 ~~~v~~g~til~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~~~~~~~g~~~~~~~G~~~~~~~~~~~~aC~t~v~~   89 (783)
T 3i9v_3           10 IVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVAD   89 (783)
T ss_dssp             EEEECTTCBHHHHHHHTTCCCCCSSCCTTSCCCCCSCCSEEEEECC-----------------CCBCSSCEETTTCBCCS
T ss_pred             EEEeCCCChHHHHHHHhCCCccccCCCCCCCCCcccCCcEEEecccccccccccccccccccccccCCCcccccCCCCCC
Confidence            45677777  999999999999999      78999999999953222111111221111     123579999999999


Q ss_pred             CeEEEecC
Q 045945          110 DCVIYTHK  117 (122)
Q Consensus       110 dl~I~l~~  117 (122)
                      +++|+...
T Consensus        90 gm~v~t~~   97 (783)
T 3i9v_3           90 GMVVDTLS   97 (783)
T ss_dssp             SEEEESSS
T ss_pred             CCEEEECC
Confidence            99998753

>1kf6_B Fumarate reductase iron-sulfur protein; respiration, fumarate reductace, succinate dehydrogenase, CO quinol, quinone, oxidoreductase; HET: FAD HQO CE1 1PE; 2.70A {Escherichia coli} SCOP: a.1.2.1 d.15.4.2 PDB: 1kfy_B* 1l0v_B* 2b76_B* 3cir_B* 3p4p_B* 3p4q_B* 3p4r_B* 3p4s_B*

Probab=97.41  E-value=4.8e-05  Score=57.58  Aligned_cols=54  Identities=13%  Similarity=0.368  Sum_probs=39.3

Q ss_pred             HcCCCCch--HHHHHHcC------CCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCC---e
Q 045945           43 AFGLKSSS--FKVSAMAV------YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSD---C  111 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~G------i~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sd---l  111 (122)
                      .+.++++.  |+++..+|      +...++|+.|.||+|.++| +|.                 .+++|++.+...   +
T Consensus        27 ~~~~~~~~tll~al~~~~~~~~p~l~~~~~c~~G~Cg~C~v~v-~G~-----------------~~~aC~~~~~~~~~~~   88 (243)
T 1kf6_B           27 EVPYDATTSLLDALGYIKDNLAPDLSYRWSCRMAICGSCGMMV-NNV-----------------PKLACKTFLRDYTDGM   88 (243)
T ss_dssp             EEEECTTCBHHHHHHHHHHHTCTTCCCCCCCSSSSSCCCEEEE-TTE-----------------EEEGGGCBGGGCTTCE
T ss_pred             EEecCCCChHHHHHHHcCcccCCCcccccCCCCCcCCCCEeEE-CCE-----------------EEeeeeeEHhhCCCcE
Confidence            34455555  78888777      4477899999999999995 564                 277888877665   6


Q ss_pred             EEE
Q 045945          112 VIY  114 (122)
Q Consensus       112 ~I~  114 (122)
                      +|+
T Consensus        89 ~i~   91 (243)
T 1kf6_B           89 KVE   91 (243)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            664

>2bs2_B Quinol-fumarate reductase iron-sulfur subunit B; 2Fe-2S, 3Fe-4S, 4Fe-4S, citric acid cycle, dihaem cytochrome B; HET: FAD HEM LMT; 1.78A {Wolinella succinogenes} SCOP: a.1.2.1 d.15.4.2 PDB: 2bs3_B* 1e7p_B* 1qlb_B* 2bs4_B*

Probab=97.40  E-value=5.6e-05  Score=57.23  Aligned_cols=37  Identities=30%  Similarity=0.612  Sum_probs=27.6

Q ss_pred             CCCCch--HHHHHHcC------CCcCCCCCCcccCCCeeeeeeccc
Q 045945           45 GLKSSS--FKVSAMAV------YKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        45 ~~~~~~--L~a~~~~G------i~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      .++++.  |+++...|      +...++|+.|+||+|.++| +|..
T Consensus        29 ~~~~~~tlL~~l~~~~~~~~~~l~~~~~c~~g~Cg~C~v~i-~G~~   73 (241)
T 2bs2_B           29 EEAPSMTIFIVLNMIRETYDPDLNFDFVCRAGICGSCGMMI-NGRP   73 (241)
T ss_dssp             ECCTTCBHHHHHHHHHHHTCTTCCCCCSSSSSSSCTTEEEE-TTEE
T ss_pred             eCCCCChHHHHHHHhchhcCCCCccCCCCCCCCCCCCEeEE-CCCe
Confidence            345554  77776543      4577899999999999999 7754

>1qfj_A Protein (flavin reductase); riboflavin, ferredoxin reductase superfami oxidoreductase; 2.20A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1

Probab=97.25  E-value=0.00011  Score=54.21  Aligned_cols=35  Identities=6%  Similarity=-0.062  Sum_probs=29.5

Q ss_pred             CCCCeeEEcCChhhhh--HhHH-HHcCCCCchHHHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVS-KAFGLKSSSFKVSAM   56 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~-~~~~~~~~~L~a~~~   56 (122)
                      ..+.++|+|||.+||+  ++.+ ++.|++.+++|.+.+
T Consensus       192 ~~~~~vyvCGp~~m~~~v~~~l~~~~g~~~~~i~~E~F  229 (232)
T 1qfj_A          192 LAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAF  229 (232)
T ss_dssp             CTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECTHH
T ss_pred             ccccEEEEECCHHHHHHHHHHHHHHcCCCHHHEEEeee
Confidence            3568999999999999  7777 899999998876654

>1t3q_A Quinoline 2-oxidoreductase small subunit; QOR, molybdenum, MCD; HET: FAD MCN; 1.80A {Pseudomonas putida} SCOP: a.56.1.1 d.15.4.2

Probab=97.15  E-value=0.00021  Score=52.14  Aligned_cols=35  Identities=17%  Similarity=0.374  Sum_probs=29.3

Q ss_pred             CCCCch--HHHHHHc-CCC-cCCCCCCcccCCCeeeeeec
Q 045945           45 GLKSSS--FKVSAMA-VYK-LPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        45 ~~~~~~--L~a~~~~-Gi~-i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      .++++.  |+++..+ |+. ++++|+.|.||+|.+.| +|
T Consensus        24 ~v~~~~tlL~~Lr~~~gl~g~~~~C~~G~CGaC~V~v-dG   62 (168)
T 1t3q_A           24 YVEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DG   62 (168)
T ss_dssp             EECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TT
T ss_pred             ecCCCCcHHHHHHhcCCCCccccCCCCCCCCCcEEEE-CC
Confidence            355555  8888886 997 99999999999999998 66

>3c8y_A Iron hydrogenase 1; dithiomethylether, H-cluster, iron-sulfur binding, oxidoreductase; HET: HCN; 1.39A {Clostridium pasteurianum} SCOP: c.96.1.1 d.15.4.2 d.58.1.5 PDB: 1c4c_A* 1c4a_A* 1feh_A*

Probab=97.02  E-value=0.00036  Score=59.39  Aligned_cols=56  Identities=18%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             cCCCCch--HHHHHHcCCCcCCCCC-------CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEE
Q 045945           44 FGLKSSS--FKVSAMAVYKLPYSCR-------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY  114 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~Gi~i~~~Cr-------~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~  114 (122)
                      +.++++.  |+++..+|+.+|+.|.       .|.||.|.+.| +|.               . .+++|++.+.++++|.
T Consensus        11 v~v~~g~tiL~a~~~~gi~ip~lC~~~~~~~~~G~Cg~C~V~v-~g~---------------~-~~~aC~t~v~~gm~V~   73 (574)
T 3c8y_A           11 FNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EGT---------------G-LVTACDTLIEDGMIIN   73 (574)
T ss_dssp             EEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TTT---------------E-EEEGGGCBCCTTCEEE
T ss_pred             EEeCCCCHHHHHHHHcCCCCCcccCCCCCCCCcccCCCCEEEe-CCC---------------c-ccccCCCCcccceeEE
Confidence            4466666  8999999999999998       89999999987 221               1 6899999999999887


Q ss_pred             ec
Q 045945          115 TH  116 (122)
Q Consensus       115 l~  116 (122)
                      ..
T Consensus        74 T~   75 (574)
T 3c8y_A           74 TN   75 (574)
T ss_dssp             SS
T ss_pred             ec
Confidence            54

>2eix_A NADH-cytochrome B5 reductase; flavoprotein, FAD-binding domain, NADH-binding, oxidoreducta; HET: FAD; 1.56A {Physarum polycephalum}

Probab=96.97  E-value=0.00028  Score=52.35  Aligned_cols=31  Identities=6%  Similarity=0.086  Sum_probs=26.4

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFK   52 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~   52 (122)
                      ..+.++|+|||.+||+  ++.+++.|+++++++
T Consensus       209 ~~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~  241 (243)
T 2eix_A          209 SSDIKVMMCGPPMMNKAMQGHLETLGYTPEQWF  241 (243)
T ss_dssp             TSSEEEEEESSHHHHHHHHHHHHHHTCCGGGEE
T ss_pred             CCCeEEEEECCHHHHHHHHHHHHHcCCCHHHEE
Confidence            3567899999999999  888889999988754

>3lrx_A Putative hydrogenase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium; 2.60A {Pyrococcus furiosus}

Probab=96.96  E-value=0.00047  Score=49.06  Aligned_cols=25  Identities=16%  Similarity=0.222  Sum_probs=22.2

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLK   47 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~   47 (122)
                      ...++|+|||.+||+  ++++++.|++
T Consensus       112 ~~~~vy~CGP~~mm~~v~~~l~~~Gv~  138 (158)
T 3lrx_A          112 DWDLVFMVGPVGDQKQVFEVVKEYGVP  138 (158)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHGGGTCC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCC
Confidence            356899999999999  8888999998

>2wdq_B Succinate dehydrogenase iron-sulfur subunit; succinate dehydrogenase activity, cell inner membrane, trica acid cycle; HET: FAD HEM CBE; 2.40A {Escherichia coli} PDB: 1nen_B* 2acz_B* 1nek_B* 2wdr_B* 2wdv_B* 2ws3_B* 2wu2_B* 2wu5_B* 2wp9_B*

Probab=96.95  E-value=0.00031  Score=52.96  Aligned_cols=37  Identities=19%  Similarity=0.319  Sum_probs=27.7

Q ss_pred             cCCCC--ch--HHHHHHcC-----CCcCCCCCCcccCCCeeeeeecc
Q 045945           44 FGLKS--SS--FKVSAMAV-----YKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        44 ~~~~~--~~--L~a~~~~G-----i~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      +.+++  +.  |+++...|     +...++|+.|.||+|.+.| +|.
T Consensus        25 v~~~~~~~~tll~~l~~~~~~~~~l~~~~~C~~g~Cg~C~v~v-~G~   70 (238)
T 2wdq_B           25 LEADEGRDMMLLDALIQLKEKDPSLSFRRSCREGVCGSDGLNM-NGK   70 (238)
T ss_dssp             EECCTTCCCBHHHHHHHHHHHCTTCCCCCSSSSSSSCTTEEEE-TTE
T ss_pred             eecCCCCCChHHHHHHHhcccCCCccccccCCCCCCCCCEEEE-CCE
Confidence            34555  44  67776665     6788899999999999997 554

>2gpj_A Siderophore-interacting protein; structural genomics, joint for structural genomics, JCSG; HET: FAD; 2.20A {Shewanella putrefaciens}

Probab=96.95  E-value=0.00024  Score=53.76  Aligned_cols=35  Identities=20%  Similarity=0.065  Sum_probs=28.6

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHH-HcCCCCchHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSK-AFGLKSSSFKVSA   55 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~-~~~~~~~~L~a~~   55 (122)
                      |..+.++|+|||.+||+  ++.++ +.|++.+++|.+.
T Consensus       188 ~~~~~~vy~CGP~~m~~av~~~l~~~~G~~~~~i~~e~  225 (252)
T 2gpj_A          188 LAGEPAVWIACEFNSMRALRRHFKQAHALPKSHFYTSS  225 (252)
T ss_dssp             CSSCEEEEEEEEHHHHHHHHHHHHHHCCCCGGGEEEEE
T ss_pred             CCCCcEEEEEcCHHHHHHHHHHHHHhcCCCHHHeEEEE
Confidence            34567899999999999  77776 7999999877653

>3lyu_A Putative hydrogenase; the C-terminal has AN alpha-beta fold, structural genomics, PSI-2, protein structure initiative; 2.30A {Pyrococcus furiosus}

Probab=96.94  E-value=0.00047  Score=48.30  Aligned_cols=27  Identities=15%  Similarity=0.163  Sum_probs=22.9

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS   49 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~   49 (122)
                      ...++|+|||.+||+  .+++++.|++.=
T Consensus       107 ~~~~vy~CGP~~Mm~av~~~l~~~~~~~~  135 (142)
T 3lyu_A          107 DWDLVFMVGPVGDQKQVFEVVKEYGVPML  135 (142)
T ss_dssp             CCSEEEEESCHHHHHHHHHHHHHHTCCBC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCchh
Confidence            446899999999999  888899998853

>4eh1_A Flavohemoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: FAD; 2.20A {Vibrio cholerae o1 biovar el tor}

Probab=96.92  E-value=0.00032  Score=51.89  Aligned_cols=36  Identities=11%  Similarity=0.102  Sum_probs=30.7

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      +..+.++|+|||.+||+  ++.+++.|++.+++|.+.+
T Consensus       198 ~~~~~~vyvCGp~~m~~~v~~~l~~~g~~~~~i~~E~F  235 (243)
T 4eh1_A          198 PIEDGDFYLCGPIGFMQYVVKQLLALGVDKARIHYEVF  235 (243)
T ss_dssp             CTTTCEEEEEECHHHHHHHHHHHHHHTCCGGGEEEEEC
T ss_pred             cCCCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence            44678999999999999  8888899999998776654

>1tvc_A Methane monooxygenase component C, methane monooxygenase; FAD-binding, NADH-binding, oxidoreductase; HET: FDA; NMR {Methylococcus capsulatus} SCOP: b.43.4.2 c.25.1.2

Probab=96.90  E-value=0.00015  Score=54.31  Aligned_cols=34  Identities=6%  Similarity=0.090  Sum_probs=29.1

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      .+.++|+|||.+||+  ++.+++.|++.+++|.+.+
T Consensus       209 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e~F  244 (250)
T 1tvc_A          209 ANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEKF  244 (250)
T ss_dssp             SSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEECCC
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEEec
Confidence            467999999999999  8888899999988776544

>2r6h_A NADH:ubiquinone oxidoreductase, Na translocating, subunit; alpha-beta-alpha sandwich, structural genomics, PSI-2; HET: FAD; 2.95A {Porphyromonas gingivalis}

Probab=96.79  E-value=0.00013  Score=55.50  Aligned_cols=32  Identities=9%  Similarity=0.187  Sum_probs=27.3

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVS   54 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~   54 (122)
                      .+.++|+|||.+||+  ++++++.|++.++++.+
T Consensus       254 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i~~e  287 (290)
T 2r6h_A          254 EDIEYYMCGPGPMANAVKGMLENLGVPRNMLFFD  287 (290)
T ss_dssp             GGEEEEEECCHHHHHHHHHHHHHHTCCGGGEEEE
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEec
Confidence            457899999999999  88888999998887654

>1cqx_A Flavohemoprotein; globin fold, six-stranded antiparallel beta sheet, helix-FLA five-stranded parallel beta sheet, lipid binding protein; HET: HEM FAD DGG; 1.75A {Cupriavidus necator} SCOP: a.1.1.2 b.43.4.2 c.25.1.5 PDB: 3ozu_A* 3ozv_B* 3ozw_A*

Probab=96.74  E-value=0.00026  Score=56.66  Aligned_cols=33  Identities=9%  Similarity=0.144  Sum_probs=29.3

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      +.++|+|||.+||+  ++.+++.|++++++|.+.+
T Consensus       362 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F  396 (403)
T 1cqx_A          362 DADYYICGPIPFMRMQHDALKNLGIHEARIHYEVF  396 (403)
T ss_dssp             TCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCC
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCHHHeEEeee
Confidence            78999999999999  8888999999998877655

>1fdr_A Flavodoxin reductase; ferredoxin reductase, flavin, oxidoreductase, flavoprotein; HET: FAD; 1.70A {Escherichia coli} SCOP: b.43.4.2 c.25.1.1 PDB: 2xnj_A* 3fpk_A*

Probab=96.70  E-value=0.0006  Score=50.65  Aligned_cols=31  Identities=3%  Similarity=0.037  Sum_probs=26.1

Q ss_pred             CCCCeeEEcCChhhhh--HhHH-HHcCCCCchHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVS-KAFGLKSSSFK   52 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~-~~~~~~~~~L~   52 (122)
                      ..+.++|+|||.+||+  ++.+ ++.|+++++++
T Consensus       204 ~~~~~vy~CGp~~m~~~v~~~l~~~~G~~~~~i~  237 (248)
T 1fdr_A          204 KETSHVMLCGNPQMVRDTQQLLKETRQMTKHLRR  237 (248)
T ss_dssp             TTTEEEEEEECHHHHHHHHHHHHHHHCCCBCBTT
T ss_pred             ccCCEEEEeCCHHHHHHHHHHHHHHcCCChHHcC
Confidence            4578999999999999  7788 88999987643

>1gvh_A Flavohemoprotein; oxidoreductase, NADP, heme, flavoprotein, FAD, iron transpor; HET: FAD HEM; 2.19A {Escherichia coli} SCOP: a.1.1.2 b.43.4.2 c.25.1.5

Probab=96.61  E-value=0.00084  Score=53.52  Aligned_cols=33  Identities=9%  Similarity=0.114  Sum_probs=29.3

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      +.++|+|||.+||+  ++.+++.|++++++|.+.+
T Consensus       356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F  390 (396)
T 1gvh_A          356 TMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYECF  390 (396)
T ss_dssp             TCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEECS
T ss_pred             CCEEEEeCCHHHHHHHHHHHHHcCCCHHHEEEecc
Confidence            78999999999999  8888999999998876655

>2h88_B Succinate dehydrogenase IP subunit; complex II, membrane protein, heme protein, iron sulfur PROT cytochrome B, oxidoreductase; HET: FAD BHG HEM UNL; 1.74A {Gallus gallus} PDB: 1yq4_B* 1yq3_B* 2fbw_B* 2h89_B* 2wqy_B* 3aef_B* 3abv_B* 3ae1_B* 3ae3_B* 3ae2_B* 3ae5_B* 3ae6_B* 3ae7_B* 3ae8_B* 3ae9_B* 3aea_B* 3aeb_B* 3aec_B* 3aed_B* 3aee_B* ...

Probab=96.60  E-value=0.00098  Score=50.90  Aligned_cols=41  Identities=24%  Similarity=0.494  Sum_probs=30.4

Q ss_pred             HHHHHHcC------CCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECC
Q 045945           51 FKVSAMAV------YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKS  109 (122)
Q Consensus        51 L~a~~~~G------i~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~s  109 (122)
                      |+++...|      +...++|+.|.||+|.+.| +|.                 .+|+|++.+..
T Consensus        45 Ld~l~~~~~~~~p~l~~~~~c~~g~Cg~C~v~i-~G~-----------------~~~aC~~~~~~   91 (252)
T 2h88_B           45 LDALIKIKNELDSTLTFRRSCREGICGSCAMNI-AGG-----------------NTLACTKKIDP   91 (252)
T ss_dssp             HHHHHHHHHHTCTTCCCCCSCSSSSSCTTEEEE-TTE-----------------EEEGGGSBCCC
T ss_pred             HHHHHHhCcccCCCccccCCCCCCCCCCCEEEE-CCc-----------------EEccccCCHhH
Confidence            77777665      3466799999999999995 554                 36777777654

>4g1v_A Flavohemoglobin; three domains: globin fold, antiparallel beta-barrel, alpha/ fold, RESP., FAD, oxidoreductase; HET: HEM FAD; 2.10A {Saccharomyces cerevisiae} PDB: 4g1b_A*

Probab=96.55  E-value=0.00087  Score=53.65  Aligned_cols=33  Identities=3%  Similarity=-0.080  Sum_probs=29.5

Q ss_pred             CCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           24 MKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        24 ~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      +.++|+|||.+||+  ++.+++.|++++++|.+.+
T Consensus       356 ~~~vyvCGp~~m~~~v~~~L~~~Gv~~~~i~~E~F  390 (399)
T 4g1v_A          356 HADVYTCGSLAFMQAMIGHLKELEHRDDMIHYEPF  390 (399)
T ss_dssp             SCEEEEEECHHHHHHHHHHHHHTTCCGGGEEEEES
T ss_pred             CCEEEEECCHHHHHHHHHHHHHcCCCHHHeeeecc
Confidence            78999999999999  8888999999998876654

>4fk8_A Ferredoxin--NADP reductase; ssgcid, NIH, niaid, structural genomics, national institute allergy and infectious diseases; HET: FAD; 2.10A {Burkholderia thailandensis} PDB: 4f7d_A*

Probab=96.54  E-value=0.00099  Score=50.28  Aligned_cols=31  Identities=10%  Similarity=0.100  Sum_probs=26.9

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFK   52 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~   52 (122)
                      ..+.++|+|||.+||+  ++.+++.|+++++++
T Consensus       226 ~~~~~v~vCGp~~m~~~v~~~l~~~gv~~~~i~  258 (271)
T 4fk8_A          226 PEQDRVMLCGSTAMLKDTTELLKKAGLVEGKNS  258 (271)
T ss_dssp             TTTEEEEEEECHHHHHHHHHHHHHTTCCBCBTT
T ss_pred             CCCCEEEEECCHHHHHHHHHHHHHcCCchhhcC
Confidence            4578999999999999  888899999988654

>1umk_A B5R, NADH-cytochrome B5 reductase; flavoprotein, beta barrel, FAD-binding domain, NADH-binding domain, oxidoreductase; HET: FAD; 1.75A {Homo sapiens} SCOP: b.43.4.2 c.25.1.1 PDB: 1ndh_A* 1i7p_A* 1ib0_A* 1qx4_A*

Probab=96.52  E-value=0.00076  Score=50.93  Aligned_cols=30  Identities=10%  Similarity=0.101  Sum_probs=25.8

Q ss_pred             CCCeeEEcCChhhhh---HhHHHHcCCCCchHH
Q 045945           23 RMKFPLVKSPGSLVS---RSVSKAFGLKSSSFK   52 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L~   52 (122)
                      .+.++|+|||.+||+   ++.+++.|+++++++
T Consensus       241 ~~~~vyvCGp~~m~~~~v~~~L~~~G~~~~~I~  273 (275)
T 1umk_A          241 EEPLVLMCGPPPMIQYACLPNLDHVGHPTERCF  273 (275)
T ss_dssp             GCCEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            578999999999998   678889999988754

>2bgi_A Ferredoxin-NADP(H) reductase; ferredoxin(flavodoxin)-NADP(H) reductase, flavoproteins, electron transfer, oxidoreductase; HET: FAD HTG; 1.68A {Rhodobacter capsulatus} PDB: 2bgj_A* 2vnh_A* 2vni_A* 2vnj_A* 2vnk_A*

Probab=96.48  E-value=0.00097  Score=50.63  Aligned_cols=29  Identities=14%  Similarity=0.187  Sum_probs=25.2

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSF   51 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L   51 (122)
                      .+.++|+|||.+||+  ++.+++.|++++++
T Consensus       225 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~~i  255 (272)
T 2bgi_A          225 ETDRAMVCGSLAFNVDVMKVLESYGLREGAN  255 (272)
T ss_dssp             TTEEEEEEECHHHHHHHHHHHHTTTCCBCBT
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCChHHc
Confidence            568999999999999  88888999998653

>2qdx_A Ferredoxin reductase; oxidoreductase; HET: FAD; 1.55A {Pseudomonas aeruginosa} PDB: 3crz_A* 1a8p_A*

Probab=96.38  E-value=0.0017  Score=48.66  Aligned_cols=27  Identities=26%  Similarity=0.377  Sum_probs=24.2

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS   49 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~   49 (122)
                      .+.++|+|||.+||+  ++.+++.|++++
T Consensus       211 ~~~~vyvCGp~~m~~~v~~~l~~~G~~~~  239 (257)
T 2qdx_A          211 QDDRAMICGSPSMLEETSAVLDSFGLKIS  239 (257)
T ss_dssp             TTEEEEEEECHHHHHHHHHHHHHTTCCBC
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHcCCChH
Confidence            568999999999999  888889999987

>2cnd_A NADH-dependent nitrate reductase; nitrate assimilating enzyme, oxidoreductase, nitrogenous acceptor; HET: FAD; 2.50A {Zea mays} SCOP: b.43.4.2 c.25.1.1 PDB: 1cnf_A* 1cne_A*

Probab=96.32  E-value=0.0015  Score=49.01  Aligned_cols=29  Identities=7%  Similarity=0.103  Sum_probs=24.2

Q ss_pred             CCCeeEEcCChhhhh---HhHHHHcCCCCchH
Q 045945           23 RMKFPLVKSPGSLVS---RSVSKAFGLKSSSF   51 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L   51 (122)
                      .+.++|+|||.+||+   ++++++.|++.+++
T Consensus       235 ~~~~vyvCGp~~m~~~~~~~~L~~~G~~~~~i  266 (270)
T 2cnd_A          235 DDTLALACGPPPMIQFAISPNLEKMKYDMANS  266 (270)
T ss_dssp             SSEEEEEECCHHHHHTTTHHHHHTTTCCHHHH
T ss_pred             CCEEEEEECCHHHHHHHHHHHHHHcCCChhhc
Confidence            456899999999998   56888999997764

>3a1f_A Cytochrome B-245 heavy chain; GP91(PHOX), NADPH binding domain, oxidoreductase; 2.00A {Homo sapiens}

Probab=96.22  E-value=0.0023  Score=44.97  Aligned_cols=26  Identities=12%  Similarity=-0.032  Sum_probs=22.0

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCC
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLK   47 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~   47 (122)
                      ..+.++|+|||.+||+  +++++..++.
T Consensus       145 ~~~~~v~~CGP~~m~~~v~~~l~~~g~~  172 (186)
T 3a1f_A          145 NTRIGVFLCGPEALAETLSKQSISNSES  172 (186)
T ss_dssp             TCEEEEEEESCHHHHHHHHHHHHHTCCC
T ss_pred             CCcEEEEEeCCHHHHHHHHHHHHHhhcc
Confidence            3468899999999999  8888888874

>1krh_A Benzoate 1,2-dioxygenase reductase; alpha-beta, FAD-binding, ferredoxin, NADH-binding, oxidoreductase; HET: FAD; 1.50A {Acinetobacter SP} SCOP: b.43.4.2 c.25.1.2 d.15.4.2

Probab=96.05  E-value=0.0012  Score=51.46  Aligned_cols=33  Identities=18%  Similarity=0.187  Sum_probs=27.9

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .+.++|+|||.+||+  ++.+++.|++.++++.+.
T Consensus       300 ~~~~vy~CGp~~m~~~v~~~l~~~G~~~~~i~~e~  334 (338)
T 1krh_A          300 GEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEK  334 (338)
T ss_dssp             GCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            567899999999999  888889999988776543

>3jqq_A Ferredoxin NADP reductase; FAD, oxidoreductase; HET: FAD A2P; 2.20A {Plasmodium falciparum} PDB: 2ok8_A* 2ok7_A* 3jqr_A* 3jqp_A*

Probab=95.09  E-value=0.0027  Score=49.59  Aligned_cols=24  Identities=8%  Similarity=-0.130  Sum_probs=18.7

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGL   46 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~   46 (122)
                      .+.++|+|||.+||+  ++++++.|+
T Consensus       277 ~~~~vyvCGP~~m~~~v~~~l~~~G~  302 (316)
T 3jqq_A          277 YKCELYICGKKSIRYKVMDILKSHDQ  302 (316)
T ss_dssp             TCCEEEEEECSTHHHHHHHHHHC---
T ss_pred             CCeEEEEeCCHHHHHHHHHHHHHcCC
Confidence            478999999999999  778887774

>2bmw_A Ferredoxin--NADP reductase; oxidoreductase, flavoprotein, FAD, FNR, reductase reductase, phycobilisome, thylakoid; HET: FAD; 1.5A {Anabaena SP} SCOP: b.43.4.2 c.25.1.1 PDB: 1h42_A* 2vyq_A* 2vzl_A* 1ogi_A* 1ogj_A* 1gjr_A* 1e62_A* 1e64_A* 1quf_A* 1e63_A* 1go2_A* 1w34_A* 1b2r_A* 1w35_A* 1w87_A* 1que_A* 1ewy_A* 1gr1_A* 2bsa_A* 1bqe_A* ...

Probab=95.08  E-value=0.012  Score=45.03  Aligned_cols=29  Identities=10%  Similarity=0.164  Sum_probs=20.2

Q ss_pred             CCCCeeEEcCChhhhh--HhH----HHHcCCCCch
Q 045945           22 TRMKFPLVKSPGSLVS--RSV----SKAFGLKSSS   50 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~----~~~~~~~~~~   50 (122)
                      ..+.++|+|||.+||+  .++    +.+.|++..+
T Consensus       254 ~~~~~vyvCGp~~m~~~v~~~l~~~~~~~g~~~~~  288 (304)
T 2bmw_A          254 NQKTHTYICGPPPMEEGIDAALSAAAAKEGVTWSD  288 (304)
T ss_dssp             STTEEEEEEECTTHHHHHHHHHHHHHHTTTCCHHH
T ss_pred             cCCcEEEEECCHHHHHHHHHHHHHHHHHcCccHHH
Confidence            3467899999999998  333    3455666544

>2b5o_A FNR, ferredoxin--NADP reductase; complex with FAD, oxidoreductase; HET: FAD; 2.50A {Synechococcus SP}

Probab=94.97  E-value=0.0071  Score=48.90  Aligned_cols=27  Identities=7%  Similarity=-0.123  Sum_probs=21.4

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCCc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKSS   49 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~~   49 (122)
                      .+.++|+|||.+||+  .+++++.+++.+
T Consensus       353 ~~~~vyvCGP~~M~~~v~~~L~~~g~~~g  381 (402)
T 2b5o_A          353 PNTHVYMCGLKGMQPPIDETFTAEAEKRG  381 (402)
T ss_dssp             TTEEEEEEECGGGHHHHHHHHHHHHHHTT
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHHHHHcC
Confidence            478999999999999  777776665544

>1fnb_A Ferredoxin-NADP+ reductase; oxidoreductase (NADP+(A),ferredoxin(A)); HET: FAD; 1.70A {Spinacia oleracea} SCOP: b.43.4.2 c.25.1.1 PDB: 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 1qg0_A* 1qga_A* 1qfz_A* 1qfy_A* 1gaw_A* 1gaq_A* 3mhp_A* 1sm4_A* 2xnc_A*

Probab=94.75  E-value=0.011  Score=45.68  Aligned_cols=22  Identities=0%  Similarity=0.024  Sum_probs=17.3

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAF   44 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~   44 (122)
                      .+.++|+|||.+||+  .++++++
T Consensus       265 ~~~~vyvCGp~~m~~~v~~~L~~~  288 (314)
T 1fnb_A          265 DNTYVYMCGLKGMEKGIDDIMVSL  288 (314)
T ss_dssp             TTEEEEEEECTTHHHHHHHHHHHH
T ss_pred             CCeEEEEECCHHHHHHHHHHHHHH
Confidence            578999999999999  5555444

>3hrd_D Nicotinate dehydrogenase small FES subunit; selenium ligand, iron, iron-sulfur, metal-binding, oxidoreductase; HET: MCN FAD; 2.20A {Eubacterium barkeri}

Probab=94.52  E-value=0.018  Score=41.93  Aligned_cols=35  Identities=14%  Similarity=0.421  Sum_probs=26.2

Q ss_pred             CCCCch--HHHHHHc-CC-CcCCCCCCcccCCCeeeeeec
Q 045945           45 GLKSSS--FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        45 ~~~~~~--L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      .++++.  |++++.. |+ ...++|+.|.||+|.|.| +|
T Consensus        18 ~v~p~~tLLd~LR~~lgltgtk~gC~~G~CGACtV~v-dG   56 (160)
T 3hrd_D           18 VTEPNKRLLDLLREDFGLTSVKEGCSEGECGACTVIF-NG   56 (160)
T ss_dssp             EECSSSBHHHHHHTTSCCTTSCCSSSSSSSCTTEEEE-TT
T ss_pred             ecCCCCCHHHHHHHhcCCCccccccCCCCCCCCEEEE-CC
Confidence            345554  6666654 66 589999999999999987 44

>3vo2_A Putative uncharacterized protein; rossmann fold, oxidoreductase, FAD binding; HET: FAD; 1.39A {Zea mays} PDB: 3vo1_A* 1gaw_A* 1gaq_A* 1qg0_A* 4af6_A* 1qga_A* 1qfz_A* 1qfy_A* 4af7_A* 1sm4_A* 3mhp_A* 1fnb_A* 1fnc_A* 1fnd_A* 1bx1_A* 1frq_A* 1frn_A* 1bx0_A* 2xnc_A*

Probab=94.27  E-value=0.027  Score=43.44  Aligned_cols=22  Identities=0%  Similarity=-0.032  Sum_probs=17.1

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKA   43 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~   43 (122)
                      ..+.++|+|||.+||+  ++++++
T Consensus       260 ~~~~~vyvCGp~~M~~~v~~~L~~  283 (310)
T 3vo2_A          260 KDNTYVYMCGLKGMEKGIDDIMLN  283 (310)
T ss_dssp             STTEEEEEEESTTHHHHHHHHHHH
T ss_pred             cCCcEEEEeCCHHHHHHHHHHHHH
Confidence            3578999999999999  554443

>3lo8_A Ferredoxin--NADP reductase; electron transport, oxidoreductase, FAD, flavoprotein; HET: FAD; 1.05A {Zea mays} PDB: 3lvb_A* 1jb9_A*

Probab=93.87  E-value=0.043  Score=42.11  Aligned_cols=22  Identities=5%  Similarity=-0.077  Sum_probs=17.1

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHc
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAF   44 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~   44 (122)
                      ...++|+|||.+||+  +++++++
T Consensus       262 ~~~~vyvCGp~~m~~~v~~~L~~~  285 (311)
T 3lo8_A          262 GGAHIYFCGLKGMMPGIQDTLKKV  285 (311)
T ss_dssp             TTCEEEEEECGGGHHHHHHHHHHH
T ss_pred             CCcEEEEECCHHHHHHHHHHHHHH
Confidence            568999999999999  5444443

>1ffv_A CUTS, iron-sulfur protein of carbon monoxide dehydrogenase; hydrolase; HET: ARO PCD FAD; 2.25A {Hydrogenophaga pseudoflava} SCOP: a.56.1.1 d.15.4.2 PDB: 1ffu_A*

Probab=93.84  E-value=0.033  Score=40.49  Aligned_cols=35  Identities=11%  Similarity=0.338  Sum_probs=24.9

Q ss_pred             CCCCch--HHHHHHc-CC-CcCCCCCCcccCCCeeeeeec
Q 045945           45 GLKSSS--FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        45 ~~~~~~--L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      .++++.  |+++... |+ ..+++|+.|.||+|.|.| +|
T Consensus        18 ~v~~~~tLLd~LR~~lgltg~k~gC~~G~CGaCtV~v-dG   56 (163)
T 1ffv_A           18 AVEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DG   56 (163)
T ss_dssp             EECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred             ecCCCCcHHHHHHhcCCCcccccCCCCCCCCCCEEEE-CC
Confidence            344444  6666542 44 469999999999999988 44

>1n62_A Carbon monoxide dehydrogenase small chain; CODH, molybdenum, molybdopterin, oxidoreductase; HET: CUB MCN FAD; 1.09A {Oligotropha carboxidovorans} SCOP: a.56.1.1 d.15.4.2 PDB: 1n5w_A* 1n61_A* 1n60_A* 1n63_A* 1zxi_A*

Probab=93.68  E-value=0.037  Score=40.38  Aligned_cols=34  Identities=12%  Similarity=0.340  Sum_probs=24.5

Q ss_pred             CCCch--HHHHHHc-CC-CcCCCCCCcccCCCeeeeeec
Q 045945           46 LKSSS--FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        46 ~~~~~--L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      ++++.  |+++... |+ ..+++|+.|.||+|.|.| +|
T Consensus        19 v~~~~tLLd~LR~~lgl~g~k~gC~~G~CGaCtV~v-dG   56 (166)
T 1n62_A           19 VEPRTLLIHFIREQQNLTGAHIGCDTSHCGACTVDL-DG   56 (166)
T ss_dssp             ECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TT
T ss_pred             cCCCCcHHHHHHHcCCCCccccCCCCCCCCCCEEEE-CC
Confidence            44444  6666553 44 468999999999999988 44

>1f20_A Nitric-oxide synthase; nitric-xoide synthase, reductase domain, FAD, NADP+, oxidore; HET: FAD NAP; 1.90A {Rattus norvegicus} SCOP: b.43.4.1 c.25.1.4

Probab=93.65  E-value=0.021  Score=46.86  Aligned_cols=26  Identities=4%  Similarity=-0.104  Sum_probs=19.8

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKS   48 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~   48 (122)
                      .++++|+|||.+||+  .+++.+++...
T Consensus       380 ~~~~vYvCGp~~M~~~V~~~L~~i~~~~  407 (435)
T 1f20_A          380 QGGHIYVCGDVTMAADVLKAIQRIMTQQ  407 (435)
T ss_dssp             SCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEeCChhHHHHHHHHHHHHHHHc
Confidence            578999999999998  66666555443

>1tll_A Nitric-oxide synthase, brain; reductase module, FMN, FAD, NADP+, oxidoreductase; HET: FMN FAD NAP; 2.30A {Rattus norvegicus} SCOP: b.43.4.1 c.23.5.2 c.25.1.4

Probab=93.06  E-value=0.066  Score=46.42  Aligned_cols=28  Identities=7%  Similarity=-0.013  Sum_probs=21.2

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHc-----CCCCch
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAF-----GLKSSS   50 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~-----~~~~~~   50 (122)
                      .+.++|+|||.+||+  .+++.++     |+.+.+
T Consensus       601 ~~~~vYvCGp~~M~~~V~~~L~~i~~~~gg~~~~~  635 (688)
T 1tll_A          601 QGGHIYVCGDVTMAADVLKAIQRIMTQQGKLSEED  635 (688)
T ss_dssp             SCCEEEEEEEHHHHHHHHHHHHHHHHTTTCCCTTH
T ss_pred             CCcEEEEeCCHHHHHHHHHHHHHHHHHcCCCCHHH
Confidence            578999999999999  6666655     565443

>1rm6_C 4-hydroxybenzoyl-COA reductase gamma subunit; xanthine oxidase family, dimer heterotrimers, oxidoreductase; HET: PCD FAD SF4 EPE; 1.60A {Thauera aromatica} SCOP: a.56.1.1 d.15.4.2 PDB: 1sb3_C*

Probab=92.81  E-value=0.088  Score=37.96  Aligned_cols=29  Identities=17%  Similarity=0.409  Sum_probs=23.4

Q ss_pred             HHHHHHc-CC-CcCCCCCCcccCCCeeeeeec
Q 045945           51 FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        51 L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      |+++... |+ ..+++|+.|.||+|.|.| +|
T Consensus        25 L~~Lr~~~gl~g~k~gC~~G~CGaCtV~v-dG   55 (161)
T 1rm6_C           25 LDYLRETVGLTGTKQGCDGGECGACTVLV-DD   55 (161)
T ss_dssp             HHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TT
T ss_pred             HHHHHHcCCCcccccCCCCCCCCCCEEEE-CC
Confidence            6666664 54 588999999999999988 55

>4dql_A Bifunctional P-450/NADPH-P450 reductase; rossmann fold, redox, FAD and NADP+ binding, oxidoreductase; HET: FAD NAP 1PE PG4; 2.15A {Bacillus megaterium} PDB: 4dqk_A*

Probab=91.93  E-value=0.073  Score=43.11  Aligned_cols=21  Identities=10%  Similarity=0.021  Sum_probs=16.0

Q ss_pred             CCCeeEEcCChhhhh---HhHHHH
Q 045945           23 RMKFPLVKSPGSLVS---RSVSKA   43 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~---~~~~~~   43 (122)
                      .++++|+|||.++|.   .+++.+
T Consensus       337 ~~~~vYvCGp~~~M~~~V~~~L~~  360 (393)
T 4dql_A          337 QGAHFYICGDGSQMAPAVEATLMK  360 (393)
T ss_dssp             TTCEEEEEEETTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCchhhHHHHHHHHHH
Confidence            578999999998887   444444

>2rc5_A Ferredoxin-NADP reductase; FAD, oxidoreductase; HET: FAD; 2.43A {Leptospira interrogans} PDB: 2rc6_A*

Probab=91.08  E-value=0.058  Score=41.39  Aligned_cols=20  Identities=5%  Similarity=-0.047  Sum_probs=17.2

Q ss_pred             eEEc-CChhhhh--HhHHHHcCC
Q 045945           27 PLVK-SPGSLVS--RSVSKAFGL   46 (122)
Q Consensus        27 ~YvC-GP~~fm~--~~~~~~~~~   46 (122)
                      +|+| ||.+||+  +++++++++
T Consensus       269 ~yvCGGp~~m~~~v~~~L~~~g~  291 (314)
T 2rc5_A          269 FYICGGPKGMEKGVIEEIQKISG  291 (314)
T ss_dssp             EEEEESSTTTHHHHHHHHHHHHT
T ss_pred             EEEeCCcHHHHHHHHHHHHHHHh
Confidence            4999 9999999  777777776

>3vr8_B Iron-sulfur subunit of succinate dehydrogenase; membrane protein, reductase, mitochondria MEMB oxidoreductase; HET: FAD HEM RQX EPH; 2.81A {Ascaris suum} PDB: 3vrb_B*

Probab=90.74  E-value=0.12  Score=40.55  Aligned_cols=31  Identities=26%  Similarity=0.521  Sum_probs=23.0

Q ss_pred             HHHHHHcC------CCcCCCCCCcccCCCeeeeeeccc
Q 045945           51 FKVSAMAV------YKLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        51 L~a~~~~G------i~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      |+++...+      +...++|+.|+||+|.+.| .|..
T Consensus        69 LdaL~~i~~~~~ptl~~~~~C~~G~CGsC~V~I-nG~~  105 (282)
T 3vr8_B           69 LDALIKIKNEVDPTLTFRRSCREGICGSCAMNI-AGEN  105 (282)
T ss_pred             HHHHHhcCcccCCceeecCCCCCCCCCCCEEEE-CCEE
Confidence            77776544      3456799999999999876 5653

>1ddg_A Sulfite reductase (NADPH) flavoprotein alpha- component; cytochrome P450 reductase, FNR, modular protein, oxidoreductase; HET: FAD; 2.01A {Escherichia coli} SCOP: b.43.4.1 c.25.1.4 PDB: 1ddi_A*

Probab=88.22  E-value=0.18  Score=40.39  Aligned_cols=22  Identities=5%  Similarity=-0.085  Sum_probs=16.7

Q ss_pred             CCCeeEEcC-Chhhhh--HhHHHHc
Q 045945           23 RMKFPLVKS-PGSLVS--RSVSKAF   44 (122)
Q Consensus        23 ~~~~~YvCG-P~~fm~--~~~~~~~   44 (122)
                      .++++|+|| |.+|++  .+++.++
T Consensus       320 ~~~~vYvCG~p~~M~~~V~~~L~~i  344 (374)
T 1ddg_A          320 DGAHIYVCGDANRMAKDVEQALLEV  344 (374)
T ss_dssp             TTCEEEEEECTTTHHHHHHHHHHHH
T ss_pred             CCcEEEEECCCHHHHHHHHHHHHHH
Confidence            478999999 999998  4444443

>2k02_A Ferrous iron transport protein C; FEOC, iron-sulfur, metal-binding, metal binding protein; NMR {Klebsiella pneumoniae subsp}

Probab=88.00  E-value=0.21  Score=32.69  Aligned_cols=38  Identities=13%  Similarity=0.298  Sum_probs=30.6

Q ss_pred             HhHHHHcCCCCch----HHHHHHcCCC-----cCCCCCCcccCCCee
Q 045945           38 RSVSKAFGLKSSS----FKVSAMAVYK-----LPYSCRAGACSTCAG   75 (122)
Q Consensus        38 ~~~~~~~~~~~~~----L~a~~~~Gi~-----i~~~Cr~G~CGtCkv   75 (122)
                      .++++.|++++..    |+.+.+.|.-     .+.+|..|.|++|.-
T Consensus        20 ~eLA~~l~VS~~TIRrDL~~Le~~G~l~R~~~~~~~C~sgsC~sC~~   66 (87)
T 2k02_A           20 KQLSARLQTPQPLIDAMLERMEAMGKVVRISETSEGCLSGSCKSCPE   66 (87)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHTTCCSEEEEEECCSSCSSSSSSCSS
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHCCCEEEEecCCCCCCCCCCCCCCC
Confidence            7888999999987    7777888864     346899899999953

>3nvw_A Xanthine dehydrogenase/oxidase; hydroxylase, homodimer, xanthine oxidase, guanine, oxidoredu; HET: FAD MTE GUN; 1.60A {Bos taurus} PDB: 3etr_A* 3ns1_A* 3nvv_A* 3nrz_A* 3nvy_A* 3nvz_A* 3rca_A* 3sr6_A* 3eub_A*

Probab=87.00  E-value=0.65  Score=33.79  Aligned_cols=34  Identities=12%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             CCCCch--HHHHHHc-CC-CcCCCCCCcccCCCeeeee
Q 045945           45 GLKSSS--FKVSAMA-VY-KLPYSCRAGACSTCAGLMV   78 (122)
Q Consensus        45 ~~~~~~--L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl   78 (122)
                      .++++.  |++++.. |+ ...++|+.|.||.|-|.|-
T Consensus        18 ~~~p~~~Ll~~LR~~lgltGtK~GC~~G~CGACTVlvd   55 (164)
T 3nvw_A           18 NADPETTLLAYLRRKLGLRGTKLGCGEGGCGACTVMLS   55 (164)
T ss_dssp             TCCTTCBHHHHHHHTSCCTTSCCSCSSSSSCTTEEEEE
T ss_pred             cCCCCCCHHHHHHHHcCCCCcCCCcCCCCCCCCEEEEc
Confidence            455554  6766653 54 6899999999999999874

>2qtl_A MSR;, methionine synthase reductase; alpha-beta-alpha structural motif, flattened antiparallel BE barrel, flexible hinge region, connecting domain; HET: FAD; 1.90A {Homo sapiens} PDB: 2qtz_A*

Probab=85.66  E-value=0.3  Score=41.23  Aligned_cols=15  Identities=7%  Similarity=-0.017  Sum_probs=13.2

Q ss_pred             CCCeeEEcCCh-hhhh
Q 045945           23 RMKFPLVKSPG-SLVS   37 (122)
Q Consensus        23 ~~~~~YvCGP~-~fm~   37 (122)
                      .++++|+|||. +|++
T Consensus       484 ~~a~vYVCGp~~~M~~  499 (539)
T 2qtl_A          484 ENGHIYVCGDAKNMAK  499 (539)
T ss_dssp             SCCEEEEEESCHHHHH
T ss_pred             CCcEEEEECCCHHHHH
Confidence            47899999996 9988

>1xn7_A Hypothetical protein YHGG; alpha+beta, GFT structural genomics, protein structure initiative, PSI, NESG; NMR {Escherichia coli} SCOP: a.4.5.62

Probab=84.65  E-value=0.63  Score=29.62  Aligned_cols=38  Identities=16%  Similarity=0.381  Sum_probs=30.0

Q ss_pred             HhHHHHcCCCCch----HHHHHHcCCC-----cCCCCCCcccCCCee
Q 045945           38 RSVSKAFGLKSSS----FKVSAMAVYK-----LPYSCRAGACSTCAG   75 (122)
Q Consensus        38 ~~~~~~~~~~~~~----L~a~~~~Gi~-----i~~~Cr~G~CGtCkv   75 (122)
                      .++++.|++++..    |+.+.+.|.-     -...|..|.|++|.-
T Consensus        20 ~eLa~~l~VS~~TIRrdL~~Le~~G~l~R~~~~GgaC~~g~C~~C~~   66 (78)
T 1xn7_A           20 AQISQTLNTPQPMINAMLQQLESMGKAVRIQEEPDGCLSGSCKSCPE   66 (78)
T ss_dssp             HHHHHHTTCCHHHHHHHHHHHHHHTSEEEECCCCCCCCCSSCCCCCC
T ss_pred             HHHHHHHCcCHHHHHHHHHHHHHCCCEEEecCcCCCCCCCCCCCCCC
Confidence            7888999999887    7777788864     245798889999953

>2w3s_A Xanthine dehydrogenase; XO, XDH, GOUT, iron, 2Fe-2S, iron-sulfur, oxidoreductase, purine metabolism, molybdenum cofactor, hypoxanthine; HET: MPN FAD XAN; 2.60A {Rhodobacter capsulatus} PDB: 2w3r_A* 2w54_A* 2w55_A* 1jro_A* 1jrp_A*

Probab=84.07  E-value=0.88  Score=37.76  Aligned_cols=27  Identities=15%  Similarity=0.412  Sum_probs=22.1

Q ss_pred             HHHHHHcCC-CcCCCCCCcccCCCeeee
Q 045945           51 FKVSAMAVY-KLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        51 L~a~~~~Gi-~i~~~Cr~G~CGtCkv~v   77 (122)
                      |+++...|+ ...++|+.|.||+|-|.|
T Consensus        24 l~~Lr~~~l~g~k~gC~~G~CGaCtV~v   51 (462)
T 2w3s_A           24 LEWLRAEGLTGTKEGCNEGDCGACTVMI   51 (462)
T ss_dssp             HHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred             HHHHHHcCCCccCCCCCCCCcCCcEEEE
Confidence            666664455 489999999999999988

>2bpo_A CPR, P450R, NADPH-cytochrom P450 reductase; NADPH-cytochrome P450 reductase, diflavin reductase, FAD, FMN-binding, electron transfer; HET: FAD FMN NAP; 2.9A {Saccharomyces cerevisiae} PDB: 2bn4_A* 2bf4_A*

Probab=82.97  E-value=0.47  Score=40.96  Aligned_cols=21  Identities=10%  Similarity=0.026  Sum_probs=15.8

Q ss_pred             CCCeeEEcCC-hhhhh--HhHHHH
Q 045945           23 RMKFPLVKSP-GSLVS--RSVSKA   43 (122)
Q Consensus        23 ~~~~~YvCGP-~~fm~--~~~~~~   43 (122)
                      .++++|+||| .+|++  .+++.+
T Consensus       628 ~~~~vYvCGpa~~M~~~V~~~L~~  651 (682)
T 2bpo_A          628 NGAFIYVCGDAKGMAKGVSTALVG  651 (682)
T ss_dssp             TTCEEEEEECSTTHHHHHHHHHHH
T ss_pred             CCcEEEEeCCchHhHHHHHHHHHH
Confidence            4789999999 79998  444433

>3qe2_A CPR, P450R, NADPH--cytochrome P450 reductase; cypor, antley-bixler syndrome, flavoprotein, FMN, FAD, oxidoreductase; HET: FAD FMN NAP; 1.75A {Homo sapiens} PDB: 3qfc_A* 3qfr_A* 1amo_A* 1j9z_A* 1ja0_A* 1ja1_A* 3es9_A* 3ojw_A* 3ojx_A* 3fjo_A* 1b1c_A*

Probab=80.43  E-value=0.53  Score=40.19  Aligned_cols=21  Identities=5%  Similarity=-0.092  Sum_probs=15.2

Q ss_pred             CCCeeEEcCCh-hhhh--HhHHHH
Q 045945           23 RMKFPLVKSPG-SLVS--RSVSKA   43 (122)
Q Consensus        23 ~~~~~YvCGP~-~fm~--~~~~~~   43 (122)
                      .++++|+|||. +|++  .+++.+
T Consensus       563 ~~a~vYvCGp~~~M~~~V~~~L~~  586 (618)
T 3qe2_A          563 GGAHIYVCGDARNMARDVQNTFYD  586 (618)
T ss_dssp             HTCEEEEEEETTTHHHHHHHHHHH
T ss_pred             CCcEEEEECCchHHHHHHHHHHHH
Confidence            36799999995 8888  444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	122
d1wria_	93	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	2e-22
d1doia_	128	d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcu	1e-20
d1iuea_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite	1e-20
d1czpa_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	2e-20
d1frra_	95	d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense	4e-20
d1krha3	104	d.15.4.2 (A:2-105) Benzoate dioxygenase reductase,	2e-19
d1awda_	94	d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [	2e-19
d1a70a_	97	d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia	2e-19
d1frda_	98	d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (A	1e-17
d2piaa3	98	d.15.4.2 (A:224-321) Phthalate dioxygenase reducta	9e-15
d1jq4a_	98	d.15.4.2 (A:) Methane monooxygenase reductase N-te	5e-14
d2fug33	95	d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chai	9e-07

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 93

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score = 82.0 bits (202), Expect = 2e-22
 Identities = 46/67 (68%), Positives = 53/67 (79%)

Query: 55  AMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIY 114
                 LP SC+AGACSTC G +VSG+VDQS+GSFLDD Q+E+GYVLTCIA P+SD VI 
Sbjct: 27  GSEKADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIE 86

Query: 115 THKESEL 121
           THKE EL
Sbjct: 87  THKEDEL 93

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]} Length = 128

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

 Score = 78.8 bits (194), Expect = 1e-20
 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQM-EKGYVLTCIAYPKSDCVIYTHKES 119
            P+SCRAGAC+ CA +++ G +D      L D ++ +K   LTCI  P +D V   +   
Sbjct: 59  WPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNAK 118

Query: 120 EL 121
            L
Sbjct: 119 HL 120

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

 Score = 77.7 bits (191), Expect = 1e-20
 Identities = 39/63 (61%), Positives = 47/63 (74%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
            +LPYSCR G+CSTCA  +V G VD  D S+LD+ Q++K Y+L C  YPKSDCVI THKE
Sbjct: 33  VELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKSDCVIETHKE 92

Query: 119 SEL 121
            EL
Sbjct: 93  DEL 95

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score = 77.3 bits (190), Expect = 2e-20
 Identities = 48/63 (76%), Positives = 55/63 (87%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACSTCAG +VSG+VDQSD SFLDD+Q+E GYVLTC+AYP SD VI THKE
Sbjct: 35  YDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKE 94

Query: 119 SEL 121
            +L
Sbjct: 95  EDL 97

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

 Score = 76.2 bits (187), Expect = 4e-20
 Identities = 47/63 (74%), Positives = 55/63 (87%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
           Y LP+SCRAGACS+C G +VSGSVD+S+GSFLDD QME+G+VLTCIA P+SD VI THKE
Sbjct: 32  YDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKE 91

Query: 119 SEL 121
            EL
Sbjct: 92  EEL 94

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]} Length = 104

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

 Score = 75.0 bits (184), Expect = 2e-19
 Identities = 22/65 (33%), Positives = 31/65 (47%), Gaps = 4/65 (6%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSF----LDDNQMEKGYVLTCIAYPKSDCVIYTH 116
           +P  CR G C TC     SG+ D  + ++    L   + ++GYVL C   P SD V    
Sbjct: 36  IPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQ 95

Query: 117 KESEL 121
             SE+
Sbjct: 96  ASSEV 100

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]} Length = 94

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

 Score = 74.7 bits (183), Expect = 2e-19
 Identities = 44/63 (69%), Positives = 50/63 (79%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
             LPYSCRAGACS+CAG + SG VDQSD SFLDD QM KG+VLTC+AYP SD  I TH+E
Sbjct: 31  LDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQE 90

Query: 119 SEL 121
           + L
Sbjct: 91  AAL 93

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]} Length = 97

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

 Score = 74.7 bits (183), Expect = 2e-19
 Identities = 39/65 (60%), Positives = 51/65 (78%)

Query: 57  AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTH 116
               LPYSCRAG+CS+CAG + +GS++Q D SFLDD+Q+++G+VLTC AYP SD  I TH
Sbjct: 31  EGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETH 90

Query: 117 KESEL 121
           K+ EL
Sbjct: 91  KKEEL 95

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

 Score = 70.5 bits (172), Expect = 1e-17
 Identities = 35/63 (55%), Positives = 46/63 (73%)

Query: 59  YKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKE 118
            +LP+SC +G+CS+C G +V G VDQSD  FLDD QM KG+ L C+ YP+S+C I TH+E
Sbjct: 35  IELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQE 94

Query: 119 SEL 121
             L
Sbjct: 95  PYL 97

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

 Score = 62.6 bits (152), Expect = 9e-15
 Identities = 16/57 (28%), Positives = 28/57 (49%), Gaps = 2/57 (3%)

Query: 57  AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI 113
           A  ++P SC +G C +C   + SG  D  D    DD   +   ++ C++  KS  ++
Sbjct: 41  ANVRVPSSCESGTCGSCKTALCSGEADHRDMVLRDD--EKGTQIMVCVSRAKSAELV 95

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]} Length = 98

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

 Score = 60.8 bits (147), Expect = 5e-14
 Identities = 26/61 (42%), Positives = 30/61 (49%), Gaps = 5/61 (8%)

Query: 61  LPYSCRAGACSTCAGLMVSGSVDQSDGSF--LDDNQMEKGYVLTCIAYPKSDCVI---YT 115
           L  SCR G C+TC  L   G  D    S   L   + E+G VL C  YPK+D  I   YT
Sbjct: 38  LMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPYT 97

Query: 116 H 116
           H
Sbjct: 98  H 98

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]} Length = 95

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

 Score = 42.2 bits (98), Expect = 9e-07
 Identities = 12/76 (15%), Positives = 20/76 (26%), Gaps = 11/76 (14%)

Query: 51  FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDGSFLDDNQMEK-----GY 99
                 A Y +P  C        GAC  C   +            L++    +       
Sbjct: 20  MDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKL 79

Query: 100 VLTCIAYPKSDCVIYT 115
             +C+       V+ T
Sbjct: 80  AASCVTAVADGMVVDT 95

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	122
d1frra_	95	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.9
d1awda_	94	2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}	99.89
d1czpa_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.89
d1a70a_	97	2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [Ta	99.89
d1iuea_	98	2Fe-2S ferredoxin {Malaria parasite (Plasmodium fa	99.89
d1wria_	93	2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]	99.87
d1frda_	98	2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.),	99.87
d1krha3	104	Benzoate dioxygenase reductase, N-terminal domain	99.86
d2piaa3	98	Phthalate dioxygenase reductase, C-terminal domain	99.82
d1jq4a_	98	Methane monooxygenase reductase N-terminal domain	99.82
d1doia_	128	2Fe-2S ferredoxin {Archaeon Haloarcula marismortui	99.76
d1i7ha_	109	Adrenodoxin-like ferredoxin {Escherichia coli [Tax	99.62
d2fug33	95	Nadh-quinone oxidoreductase chain 3, Nqo3, N-termi	99.53
d1e9ma_	106	2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredo	99.5
d1xlqa1	106	2Fe-2S ferredoxin {Pseudomonas putida, putidaredox	99.41
d1b9ra_	105	2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [T	99.35
d1l5pa_	93	2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5	99.28
d2bt6a1	104	Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}	99.1
d1ep3b2	160	Dihydroorotate dehydrogenase B, PyrK subunit {Lact	98.71
d1cqxa3	142	Flavohemoglobin, C-terminal domain {Alcaligenes eu	97.69
d1krha2	133	Benzoate dioxygenase reductase {Acinetobacter sp.	97.63
d1qfja2	135	NAD(P)H:flavin oxidoreductase {Escherichia coli [T	97.62
d1tvca2	141	Methane monooxygenase component C, MmoC {Methyloco	97.61
d1gvha3	143	Flavohemoglobin, C-terminal domain {Escherichia co	97.49
d1umka2	147	cytochrome b5 reductase {Human (Homo sapiens) [Tax	97.44
d2piaa2	120	Phthalate dioxygenase reductase {Pseudomonas cepac	97.38
d2cnda2	146	Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}	97.36
d1a8pa2	158	Ferredoxin reductase (flavodoxin reductase) {Azoto	97.14
d3c8ya2	126	Fe-only hydrogenase, N-terminal domain {Clostridiu	97.08
d2bmwa2	162	Ferredoxin reductase (flavodoxin reductase) {Cyano	97.05
d1fnda2	160	Ferredoxin reductase (flavodoxin reductase) {Spina	96.82
d1jb9a2	154	Ferredoxin reductase (flavodoxin reductase) {Maize	96.43
d2bs2b2	106	Fumarate reductase iron-sulfur protein, N-terminal	96.21
d1fdra2	148	Ferredoxin reductase (flavodoxin reductase) {Esche	96.03
d1kf6b2	105	Fumarate reductase iron-sulfur protein, N-terminal	95.99
d1f20a2	165	Neuronal nitric-oxide synthase FAD/NADP+ domain {R	95.95
d1nekb2	106	Succinate dehydogenase iron-sulfur protein, N-term	95.95
d1dgja2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	93.34
d1ddga2	153	Sulfite reductase flavoprotein {Escherichia coli [	93.09
d1t3qa2	81	Quinoline 2-oxidoreductase small subunit QorS, N-d	93.09
d1vlba2	80	Aldehyde oxidoreductase, N-terminal domain {Desulf	92.13
d1rm6c2	81	4-hydroxybenzoyl-CoA reductase gamma subunit HrcC,	91.22
d1ffva2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	91.11
d1jroa2	84	Xanthine dehydrogenase chain A, N-terminal domain	90.27
d1ja1a3	160	NADPH-cytochrome p450 reductase {Rat (Rattus norve	89.59
d1n62a2	79	Carbone monoxide (CO) dehydrogenase iron-sulfur pr	89.4
d1v97a2	90	Xanthine oxidase, N-terminal domain {Cow (Bos taur	87.64

>d1frra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.90  E-value=1.1e-24  Score=146.55  Aligned_cols=79  Identities=61%  Similarity=1.031  Sum_probs=74.2

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      ++.+++++  |++++++||++||+|+.|.||+|+++|++|++.+.+...|+++++++||+|+||++|.+|++|+++.+++
T Consensus        14 ~~~~~~g~slLda~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~d~~ie~~~e~~   93 (95)
T d1frra_          14 TLDVPEGTTILDAAEEAGYDLPFSCRAGACSSCLGKVVSGSVDESEGSFLDDGQMEEGFVLTCIAIPESDLVIETHKEEE   93 (95)
T ss_dssp             EEEECTTCCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESSCEEEECCCTTT
T ss_pred             EEEECCCCcHHHHHHHcCCCEEeccCCcEeCCCEEEEecceEcccccccCCHHHHhcCcEEeeeCEECCCEEEEecCccc
Confidence            46677776  9999999999999999999999999999999999888899999999999999999999999999999988


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      |
T Consensus        94 ~   94 (95)
T d1frra_          94 L   94 (95)
T ss_dssp             T
T ss_pred             c
Confidence            6

>d1awda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Chlorella fusca [TaxId: 3073]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Chlorella fusca [TaxId: 3073]

Probab=99.89  E-value=3.3e-24  Score=143.94  Aligned_cols=80  Identities=56%  Similarity=0.945  Sum_probs=74.4

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES  119 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~  119 (122)
                      +.+.+++++  |++++++||++||+|+.|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++++
T Consensus        12 ~~~~~~~~~slL~aa~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~D~~i~~~~~~   91 (94)
T d1awda_          12 ETIECPEDTYILDAAEEAGLDLPYSCRAGACSSCAGKVESGEVDQSDQSFLDDAQMGKGFVLTCVAYPTSDVTILTHQEA   91 (94)
T ss_dssp             EEEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSCEEEECCCGG
T ss_pred             EEEEeCCCCcHHHHHHHcCCcEEEecCCCccCCceEEEeeceEcccccccCCHHHHhCCcEEEeeCEECCCEEEecCChh
Confidence            356677776  999999999999999999999999999999999998889999999999999999999999999999988


Q ss_pred             CC
Q 045945          120 EL  121 (122)
Q Consensus       120 ~~  121 (122)
                      +|
T Consensus        92 ~~   93 (94)
T d1awda_          92 AL   93 (94)
T ss_dssp             GG
T ss_pred             hc
Confidence            76

>d1czpa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.89  E-value=3.3e-24  Score=145.00  Aligned_cols=80  Identities=60%  Similarity=1.036  Sum_probs=74.6

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES  119 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~  119 (122)
                      +++.+++++  |++++++||++||+|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++|.+|++|+++.++
T Consensus        16 ~~~~v~~~~slL~a~~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~d~~ie~~~e~   95 (98)
T d1czpa_          16 HEIEVPDDEYILDAAEEQGYDLPFSCRAGACSTCAGKLVSGTVDQSDQSFLDDDQIEAGYVLTCVAYPTSDVVIQTHKEE   95 (98)
T ss_dssp             EEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSCEEEECCCTT
T ss_pred             EEEEeCcCChHHHHHHHcCCCeEEecCCcccCCCeeEEecccccccccccCChhHhcCCeEEeccCEECCCEEEEcCCcc
Confidence            355677776  999999999999999999999999999999999998889999999999999999999999999999998


Q ss_pred             CC
Q 045945          120 EL  121 (122)
Q Consensus       120 ~~  121 (122)
                      +|
T Consensus        96 ~~   97 (98)
T d1czpa_          96 DL   97 (98)
T ss_dssp             TT
T ss_pred             cc
Confidence            87

>d1a70a_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=99.89  E-value=3.8e-24  Score=144.25  Aligned_cols=79  Identities=51%  Similarity=0.911  Sum_probs=73.6

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++|++++|+|+.|.||+|+++|++|++.+.+...|+++++++|++|+||++|.+|++|+++++++
T Consensus        15 ~~~~~~g~tlL~a~~~~Gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~~~~~g~~L~C~~~~~~D~~Ie~~~e~e   94 (97)
T d1a70a_          15 EFQCPDDVYILDAAEEEGIDLPYSCRAGSCSSCAGKLKTGSLNQDDQSFLDDDQIDEGWVLTCAAYPVSDVTIETHKKEE   94 (97)
T ss_dssp             EEEEETTSCHHHHHHHTTCCCCCSSSSSCSSTTEEEEEESCEECTTCCSSCHHHHHHTEEEGGGCEESSCEEEECCCGGG
T ss_pred             EEEeCCCchHHHHHHHcCCCeeeCCCcEEcCCCEeEeecCccccccccccChhHhcCCeEEeeeCEECCCEEEEcCChhh
Confidence            46667766  9999999999999999999999999999999999888899999999999999999999999999998887


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      |
T Consensus        95 l   95 (97)
T d1a70a_          95 L   95 (97)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1iuea_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Malaria parasite (Plasmodium falciparum) [TaxId: 5833]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Malaria parasite (Plasmodium falciparum) [TaxId: 5833]

Probab=99.89  E-value=2.7e-24  Score=145.30  Aligned_cols=80  Identities=51%  Similarity=0.928  Sum_probs=73.5

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES  119 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~  119 (122)
                      +++.+++++  |++++++|+.+||+|+.|.||+|+++|++|++++.+...|+++++++|++|+||++|.+|++|++++++
T Consensus        14 ~~~~~~~getlLda~~~~gi~i~~~C~~G~CgtC~~~v~~G~v~~~~~~~l~~~e~~~g~~L~C~~~~~~d~~ie~~~~~   93 (98)
T d1iuea_          14 KKIECNEDEYILDASERQNVELPYSCRGGSCSTCAAKLVEGEVDNDDQSYLDEEQIKKKYILLCTCYPKSDCVIETHKED   93 (98)
T ss_dssp             EEEEEETTSCHHHHHHHTTCCCCCSSCSSSSSTTEEEEEESCEECTTCCSSCHHHHHTTEEEGGGCEESSCEEEECCCHH
T ss_pred             EEEEECCCCcHHHHHHHcCCCeEEcCCceEcCCCEEEEecCcCccCccccCChhHHhcCeEEecCCEECCCEEEEcCCcc
Confidence            356677776  999999999999999999999999999999999988889999999999999999999999999999876


Q ss_pred             CC
Q 045945          120 EL  121 (122)
Q Consensus       120 ~~  121 (122)
                      +|
T Consensus        94 ~l   95 (98)
T d1iuea_          94 EL   95 (98)
T ss_dssp             HH
T ss_pred             cc
Confidence            54

>d1wria_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Equisetum arvense [TaxId: 3258]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Equisetum arvense [TaxId: 3258]

Probab=99.87  E-value=2.2e-23  Score=139.70  Aligned_cols=78  Identities=60%  Similarity=1.027  Sum_probs=70.3

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCCC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKESE  120 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~~  120 (122)
                      .+.+++++  |++++++ +++||+|+.|.||+|+++|++|++++++...|+++++++|++|+||++|.+|++|+++.+++
T Consensus        14 ~~~~~~~~~lLdaa~~~-~~lp~~Cr~G~CgtC~~~v~~G~v~~~~~~~L~~~e~~~g~~L~C~~~~~sD~~ie~~~ed~   92 (93)
T d1wria_          14 TFDVEPGERLIDIGSEK-ADLPLSCQAGACSTCLGKIVSGTVDQSEGSFLDDEQIEQGYVLTCIAIPESDVVIETHKEDE   92 (93)
T ss_dssp             EEEECTTSCHHHHHHHH-SCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEETTTCEESSCEEEECCCGGG
T ss_pred             EEEeCCCCcHHHHHHhC-CCEEEEeCCcccCcCEeEeecceEeccccccCCHhHHhcCeEEeeeCEECCCEEEEccCcCC
Confidence            45566666  8888775 59999999999999999999999999888899999999999999999999999999999887


Q ss_pred             C
Q 045945          121 L  121 (122)
Q Consensus       121 ~  121 (122)
                      |
T Consensus        93 v   93 (93)
T d1wria_          93 L   93 (93)
T ss_dssp             C
T ss_pred             C
Confidence            5

>d1frda_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Cyanobacterium (Anabaena sp.), pcc 7119 and 7120 [TaxId: 1167]

Probab=99.87  E-value=5.7e-23  Score=138.43  Aligned_cols=80  Identities=44%  Similarity=0.878  Sum_probs=73.7

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEEEecCCC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVIYTHKES  119 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~~~  119 (122)
                      +++.+++++  |++++++||++||+|+.|.||+|++++++|++.+.+...|+++++++||+|+||++|.+|++|++++++
T Consensus        16 ~ti~v~~g~siLdaa~~~Gi~i~~~C~~G~CgtC~~~v~~G~~~~~~~~~l~~~~~~~g~~L~C~~~~~~D~~Ie~~~e~   95 (98)
T d1frda_          16 TTIEIDEETTILDGAEENGIELPFSCHSGSCSSCVGKVVEGEVDQSDQIFLDDEQMGKGFALLCVTYPRSNCTIKTHQEP   95 (98)
T ss_dssp             EEEEEETTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEECTTCCSCCHHHHHTTEEEGGGCEESSSEEEECCCGG
T ss_pred             EEEEeCCCChHHHHHHHcCCCEEEecCCCeeCCCEEEeccCCcccccccccChhhhcCCeEEeeeCEECCCEEEEeCCcc
Confidence            345667666  999999999999999999999999999999999988789999999999999999999999999999887


Q ss_pred             CC
Q 045945          120 EL  121 (122)
Q Consensus       120 ~~  121 (122)
                      .|
T Consensus        96 ~l   97 (98)
T d1frda_          96 YL   97 (98)
T ss_dssp             GC
T ss_pred             cc
Confidence            65

>d1krha3 d.15.4.2 (A:2-105) Benzoate dioxygenase reductase, N-terminal domain {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Benzoate dioxygenase reductase, N-terminal domain
species: Acinetobacter sp. [TaxId: 472]

Probab=99.86  E-value=1.3e-22  Score=138.35  Aligned_cols=79  Identities=28%  Similarity=0.547  Sum_probs=71.0

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCC----CCCCChhcccCCeEEeeceEECCCeEEEec
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSD----GSFLDDNQMEKGYVLTCIAYPKSDCVIYTH  116 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~----~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~  116 (122)
                      .+.+++++  |++++++||++||+|+.|.||+|+++|++|++++.+    ...|+++++++||+|+||++|.+|++|+++
T Consensus        16 ~~~~~~getlL~aa~~~gi~i~~~C~~G~CgtC~v~v~~G~~~~~~~~~~~~~l~~~e~~~g~~LaCq~~~~~d~~i~i~   95 (104)
T d1krha3          16 FICIAQGETLSDAAYRQQINIPMDCREGECGTCRAFCESGNYDMPEDNYIEDALTPEEAQQGYVLACQCRPTSDAVFQIQ   95 (104)
T ss_dssp             EEEECTTCCHHHHHHHTTCCCSCSCSSSSSCTTEEEEEECCEECCGGGSCTTTCCHHHHHHTEEETTTCEESSSEEEEES
T ss_pred             EEEeCCCCcHHHHHHHcCCCCccccCCcccCCCEEEeeeCcccccccccccccCCHHHHhcCcEEeeeCEECCCEEEEec
Confidence            45666666  999999999999999999999999999999988753    357999999999999999999999999999


Q ss_pred             CCCCC
Q 045945          117 KESEL  121 (122)
Q Consensus       117 ~~~~~  121 (122)
                      +.+++
T Consensus        96 ~~~e~  100 (104)
T d1krha3          96 ASSEV  100 (104)
T ss_dssp             SCTTG
T ss_pred             Ccchh
Confidence            98875

>d2piaa3 d.15.4.2 (A:224-321) Phthalate dioxygenase reductase, C-terminal domain {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Phthalate dioxygenase reductase, C-terminal domain
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=99.82  E-value=3.6e-21  Score=129.84  Aligned_cols=73  Identities=26%  Similarity=0.562  Sum_probs=63.7

Q ss_pred             HHHcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCC-eEEEe
Q 045945           41 SKAFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSD-CVIYT  115 (122)
Q Consensus        41 ~~~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sd-l~I~l  115 (122)
                      .+.+.+++++  |++++++|++|||+|+.|.||+|+++|++|++++++ ..+++++ +++++|+||++|++| ++|||
T Consensus        23 g~~~~v~~~~slL~aa~~~Gi~ip~~C~~G~CgtC~~~v~~G~v~~~~-~~~~~~~-~~~~~L~C~s~~~s~~lvidl   98 (98)
T d2piaa3          23 GTSFEIPANRSILEVLRDANVRVPSSCESGTCGSCKTALCSGEADHRD-MVLRDDE-KGTQIMVCVSRAKSAELVLDL   98 (98)
T ss_dssp             CCEEEECTTSCHHHHHHHTTCCCCCSCSSSSSCTTEEEEEESCEECCC-SSCCTTT-TTTEEETTTCEESSSEEEECC
T ss_pred             CEEEEECcCCcHHHHHHhcCCcccccCCccEeCCCEEEEEeeceecCC-CCCChHH-hCCcEEEeeCEECCCCEEEeC
Confidence            3567788777  999999999999999999999999999999999886 4666655 578999999999985 88875

>d1jq4a_ d.15.4.2 (A:) Methane monooxygenase reductase N-terminal domain {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Methane monooxygenase reductase N-terminal domain
species: Methylococcus capsulatus [TaxId: 414]

Probab=99.82  E-value=6.9e-22  Score=132.94  Aligned_cols=75  Identities=32%  Similarity=0.487  Sum_probs=67.5

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCC--CCCCChhcccCCeEEeeceEECCCeEEEecC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSD--GSFLDDNQMEKGYVLTCIAYPKSDCVIYTHK  117 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~--~~~Ls~~e~~~g~~LaCqs~~~sdl~I~l~~  117 (122)
                      +|.+++++  |++++++||++||+|+.|.||+|+++|++|++++.+  ...|+++++++|++|+||++|++|++|++|.
T Consensus        18 ~~~~~~g~slLdaa~~~Gi~i~~~C~~G~Cg~C~~~v~~G~~~~~~~~~~~L~~~e~~~g~~L~Cq~~~~sD~~i~lp~   96 (98)
T d1jq4a_          18 RFECRSDEDVITAALRQNIFLMSSCREGGCATCKALCSEGDYDLKGCSVQALPPEEEEEGLVLLCRTYPKTDLEIELPY   96 (98)
T ss_dssp             EEEEESCCTHHHHHHHHTCCCCCSCCSSCCCCCCBCEEECCCCCCCSCTTTSCHHHHHHHCBCTTTCCSSCCSEEECSC
T ss_pred             EEEeCCCchHHHHHHHcCCCeEEcCCCceeCCceEEEEECeEecCccccccCCHhHHhcCeEEeccCEECCCEEEEeCC
Confidence            35566666  999999999999999999999999999999998865  3579999999999999999999999999984

>d1doia_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Archaeon Haloarcula marismortui [TaxId: 2238]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Archaeon Haloarcula marismortui [TaxId: 2238]

Probab=99.76  E-value=2.8e-19  Score=126.02  Aligned_cols=75  Identities=31%  Similarity=0.679  Sum_probs=63.7

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcc-cCCeEEeeceEECCC-eEEEecC
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQM-EKGYVLTCIAYPKSD-CVIYTHK  117 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~-~~g~~LaCqs~~~sd-l~I~l~~  117 (122)
                      ++.+++|+  |++++++||++||+|+.|.||+|+++|++|++++.+...|++++. +.|++|+||++|++| ++|+...
T Consensus        39 t~~v~~g~tlLdaa~~aGi~ip~~Cr~G~CgsC~~~v~~G~~~~~~~~~l~~~e~~~~g~~L~Cqa~p~sD~v~v~~d~  117 (128)
T d1doia_          39 SLEVNEGEYILEAAEAQGYDWPFSCRAGACANCAAIVLEGDIDMDMQQILSDEEVEDKNVRLTCIGSPDADEVKIVYNA  117 (128)
T ss_dssp             EEECCTTSCHHHHHHHTTCCCCCSSSSSSSSTTEEEEEESCEEECCCSSSCHHHHHTSCEEEGGGEEECSSEEEEEECG
T ss_pred             EEEECcCChHHHHHHHcCCCCccCCCCCcCCCCceEeeeCCcccCcccCCCHHHHHhCCEEEeeeCEECCCeEEEECCc
Confidence            45677776  999999999999999999999999999999999887777877664 558999999999999 4554443

>d1i7ha_ d.15.4.1 (A:) Adrenodoxin-like ferredoxin {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin-like ferredoxin
species: Escherichia coli [TaxId: 562]

Probab=99.62  E-value=1.7e-16  Score=108.08  Aligned_cols=78  Identities=18%  Similarity=0.273  Sum_probs=61.8

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC-CcccCCCeeeeeeccccCCCCC-----C-CChhcccCCeEEeeceEECC-Ce
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR-AGACSTCAGLMVSGSVDQSDGS-----F-LDDNQMEKGYVLTCIAYPKS-DC  111 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~-----~-Ls~~e~~~g~~LaCqs~~~s-dl  111 (122)
                      +++.+++|+  |++++++|+++++.|+ .|.||+|+++|.+|........     . ....+..+|+||+||+++.+ |+
T Consensus        16 ~~v~~~~G~tLl~aa~~~gi~i~~~CgG~g~CgtC~v~v~~G~~~l~~~~~~E~~~l~~~~~~~~~~RLaCQ~~v~~~dl   95 (109)
T d1i7ha_          16 AVLEANSGETILDAALRNGIEIEHACEKSCACTTCHCIVREGFDSLPESSEQEDDMLDKAWGLEPESRLSCQARVTDEDL   95 (109)
T ss_dssp             EEEECCTTCBHHHHHHHTTCCCCCTTSSSSCCSTTEEEEEECGGGSCCCCHHHHHHHTTCTTCCTTEEETTTCBCCSSCE
T ss_pred             cEEEeCCCCcHHHHHHHcCCCCCcCCCCcceeCCeEEEeecCccccCCCChHHhhhhhccccCCCCeEEEEeeEECCCCE
Confidence            456677776  8999999999999995 8999999999999987654311     1 22235678899999999975 89


Q ss_pred             EEEecCCC
Q 045945          112 VIYTHKES  119 (122)
Q Consensus       112 ~I~l~~~~  119 (122)
                      +|++|+..
T Consensus        96 ~V~lP~~t  103 (109)
T d1i7ha_          96 VVEIPRYT  103 (109)
T ss_dssp             EEECCSCC
T ss_pred             EEEeCccc
Confidence            99998743

>d2fug33 d.15.4.2 (3:1-95) Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Nadh-quinone oxidoreductase chain 3, Nqo3, N-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=99.53  E-value=1.5e-15  Score=100.22  Aligned_cols=73  Identities=15%  Similarity=0.240  Sum_probs=52.6

Q ss_pred             HHcCCCCch--HHHHHHcCCCcCCCCC------CcccCCCeeeeeeccccCCCC-----CCCChhcccCCeEEeeceEEC
Q 045945           42 KAFGLKSSS--FKVSAMAVYKLPYSCR------AGACSTCAGLMVSGSVDQSDG-----SFLDDNQMEKGYVLTCIAYPK  108 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~i~~~Cr------~G~CGtCkv~vl~G~v~~~~~-----~~Ls~~e~~~g~~LaCqs~~~  108 (122)
                      +.+.+++|+  |++++++||++||.|+      .|.||+|+++|++|.+++...     ..+.+.+...+++|+||+++.
T Consensus         9 ~~~~v~~g~tll~a~~~~gi~ip~~C~~~~~~~~G~C~~C~V~v~~g~~~~~~~~~~~~~~~~~~~~~~~~rlaCqt~v~   88 (95)
T d2fug33           9 RIVEVPPGTSVMDAVFHAGYDVPLFCSEKHLSPIGACRMCLVRIGLPKKGPDGKPLLNEKGEPEIQWQPKLAASCVTAVA   88 (95)
T ss_dssp             CEEEECTTCBHHHHHHHHTCCCCCCSCCTTSCCCSCSTTSEEEEEC------------------CCBCSSCEETTTCBCC
T ss_pred             EEEEECCCCcHHHHHHhcCCCCCccccCCCcCcccccCCCEEEEccCccccCcccchhhhhhhHhhcCCCccCcCcCCCC
Confidence            345677777  9999999999999996      599999999999999887542     335455556789999999999


Q ss_pred             CCeEEE
Q 045945          109 SDCVIY  114 (122)
Q Consensus       109 sdl~I~  114 (122)
                      +|++|+
T Consensus        89 ~gm~V~   94 (95)
T d2fug33          89 DGMVVD   94 (95)
T ss_dssp             TTCEEE
T ss_pred             CCCEEe
Confidence            999986

>d1e9ma_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Rhodobacter capsulatus, ferredoxin VI [TaxId: 1061]

Probab=99.50  E-value=5.2e-15  Score=100.00  Aligned_cols=77  Identities=19%  Similarity=0.171  Sum_probs=60.5

Q ss_pred             HcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCCCCC--------CCChhcccCCeEEeeceEECCC
Q 045945           43 AFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQSDGS--------FLDDNQMEKGYVLTCIAYPKSD  110 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~~~~--------~Ls~~e~~~g~~LaCqs~~~sd  110 (122)
                      .+.+++|+  +++++++|++ +++.|+ .|.||+|+++|.+|..+.....        .++.+++.+++||+||.++..|
T Consensus        14 ~i~~~~G~tLl~a~~~~gi~~i~~~CgG~g~C~tC~V~i~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLaCQ~~v~~d   93 (106)
T d1e9ma_          14 EVEAKPGLTVMEAARDNGVPGIDADCGGACACSTCHAYVDPAWVDKLPKALPTETDMIDFAYEPNPATSRLTCQIKVTSL   93 (106)
T ss_dssp             EEECCTTSBHHHHHHTTTCTTCCCTTSSSSSSCTTEEEECHHHHTTSCCCCHHHHHHHTTSSSCCTTTEEEGGGCBCCGG
T ss_pred             EEEECCCChHHHHHHHcCCCCcCcccccCceecceEEEeccCccccCCCCCHHHHHHHhhccccCCCceEeeEeCEeccc
Confidence            45566666  8999999995 999997 7999999999999976643311        2344556678999999999765


Q ss_pred             ---eEEEecCCC
Q 045945          111 ---CVIYTHKES  119 (122)
Q Consensus       111 ---l~I~l~~~~  119 (122)
                         ++|++|++|
T Consensus        94 ~~gl~V~iPe~q  105 (106)
T d1e9ma_          94 LDGLVVHLPEKQ  105 (106)
T ss_dssp             GTTEEEECCSCC
T ss_pred             cCCEEEECCccc
Confidence               899998765

>d1xlqa1 d.15.4.1 (A:1-106) 2Fe-2S ferredoxin {Pseudomonas putida, putidaredoxin [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas putida, putidaredoxin [TaxId: 303]

Probab=99.41  E-value=9.4e-14  Score=93.86  Aligned_cols=77  Identities=12%  Similarity=0.251  Sum_probs=59.8

Q ss_pred             HcCCCCch--HHHHHHcCC-CcCCCCC-CcccCCCeeeeeeccccCCCC------CCC--ChhcccCCeEEeeceEECCC
Q 045945           43 AFGLKSSS--FKVSAMAVY-KLPYSCR-AGACSTCAGLMVSGSVDQSDG------SFL--DDNQMEKGYVLTCIAYPKSD  110 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi-~i~~~Cr-~G~CGtCkv~vl~G~v~~~~~------~~L--s~~e~~~g~~LaCqs~~~sd  110 (122)
                      .+.+++|+  |++++++|+ .+++.|+ .|.||+|+|+|.+|..+....      ..|  ...+..+++||+||.++.++
T Consensus        14 ~i~~~~G~tLl~aa~~~gi~~i~~~CgG~~~C~tC~V~v~~g~~~~l~~~~~~E~~~L~~~~~~~~~~sRLaCQ~~v~~~   93 (106)
T d1xlqa1          14 ELDVADGVSLMQAAVSNGIYDIVGDCGGSASCATCHVYVNEAFTDKVPAANEREIGMLESVTAELKPNSRLCCQIIMTPE   93 (106)
T ss_dssp             EEECCTTCBHHHHHHHTTCTTSCCTTCSSSSSCTTEEEECTTTGGGSCCCCHHHHHHHTTCSSCCCTTEEEGGGCBCCGG
T ss_pred             EEEeCCCChHHHHHHHhCcCCchhhhhhccccccceEEecccchhcCCCCCHHHHHHHHhhhccCCCCcEeeeeeEeccc
Confidence            45566666  899999999 5999997 899999999999997654321      112  22345678999999999765


Q ss_pred             ---eEEEecCCC
Q 045945          111 ---CVIYTHKES  119 (122)
Q Consensus       111 ---l~I~l~~~~  119 (122)
                         ++|++|+++
T Consensus        94 ~dgl~V~vPe~q  105 (106)
T d1xlqa1          94 LDGIVVDVPDRQ  105 (106)
T ss_dssp             GTTEEEECCSCC
T ss_pred             CCCEEEECCCcc
Confidence               899998865

>d1b9ra_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Pseudomonas sp., terpredoxin [TaxId: 306]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Pseudomonas sp., terpredoxin [TaxId: 306]

Probab=99.35  E-value=3.5e-14  Score=95.94  Aligned_cols=77  Identities=14%  Similarity=0.251  Sum_probs=59.5

Q ss_pred             HHcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCCCC------CC--CChhcccCCeEEeeceEECC
Q 045945           42 KAFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQSDG------SF--LDDNQMEKGYVLTCIAYPKS  109 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~~~------~~--Ls~~e~~~g~~LaCqs~~~s  109 (122)
                      +.+.+++|+  |+++.++||+ +++.|+ .|.||+|+++|.+|..+....      ..  ...+++.+++||+||.++.+
T Consensus        13 ~~v~~~~G~tLl~aa~~~gi~~i~~~CgG~g~C~tC~V~v~~g~~~~l~~~~~~E~~~l~~~~~~~~~~sRLaCQ~~v~~   92 (105)
T d1b9ra_          13 YAVDAQDGQSLMEVATQNGVPGIVAECGGSCVCATCRIEIEDAWVEIVGEANPDENDLLQSTGEPMTAGTRLSCQVFIDP   92 (105)
T ss_dssp             EEEECCTTCCTTHHHHHHTCCCCCCSSTTSSCCCCCCCEECTTTHHHHTCCCTTHHHHHHTSCCCCCTTBSCGGGCCCCT
T ss_pred             EEEEECCCCcHHHHHHHcCCCCcccccCCCccccceEEEecccccccCCCCCHHHHHHHHhccccCCCCcEeEeeeEecc
Confidence            345667766  9999999996 999995 899999999999996553211      11  23345678899999999987


Q ss_pred             C---eEEEecCC
Q 045945          110 D---CVIYTHKE  118 (122)
Q Consensus       110 d---l~I~l~~~  118 (122)
                      |   ++|++|-.
T Consensus        93 dldgl~V~vP~~  104 (105)
T d1b9ra_          93 SMDGLIVRVPLP  104 (105)
T ss_dssp             TSTTEEEECCSC
T ss_pred             cCCCeEEEecCC
Confidence            6   79999864

>d1l5pa_ d.15.4.1 (A:) 2Fe-2S ferredoxin {Trichomonas vaginalis [TaxId: 5722]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: 2Fe-2S ferredoxin
species: Trichomonas vaginalis [TaxId: 5722]

Probab=99.28  E-value=4.7e-13  Score=88.76  Aligned_cols=72  Identities=24%  Similarity=0.380  Sum_probs=56.7

Q ss_pred             HHcCCCCch--HHHHHHcCCC-cCCCCC-CcccCCCeeeeeeccccCCCC---CCCChhcccCCeEEeeceEECCC---e
Q 045945           42 KAFGLKSSS--FKVSAMAVYK-LPYSCR-AGACSTCAGLMVSGSVDQSDG---SFLDDNQMEKGYVLTCIAYPKSD---C  111 (122)
Q Consensus        42 ~~~~~~~~~--L~a~~~~Gi~-i~~~Cr-~G~CGtCkv~vl~G~v~~~~~---~~Ls~~e~~~g~~LaCqs~~~sd---l  111 (122)
                      +.+.+++|+  |++++++||+ +++.|+ .|.||+|+++|.+|.+.....   ..|  +++.+++||+||.+..++   +
T Consensus        12 ~~i~~~~G~tLl~al~~~gi~~i~~~CgG~~~C~tC~v~v~~g~~~~~~~~E~~~l--~~~~~~~RLaCQi~l~~eldg~   89 (93)
T d1l5pa_          12 KQLKFEDDQTLFTVLTEAGLMSADDTCQGNKACGKCICKHVSGKVAAAEDDEKEFL--EDQPANARLACAITLSGENDGA   89 (93)
T ss_dssp             EEEECCTTEEHHHHHHTTTSSCCTTSCSSSSSSCCCEEEEEESCCCCCCHHHHHHH--TTSCTTEEEGGGCEECGGGTTC
T ss_pred             EEEEeCCCchHHHHHHHhCCCCccccccCCCEeCccEEEEcCCccCCCChHHHHHh--hccCCCcEEEEEeEeccccCCe
Confidence            345677777  8999999994 999996 899999999999997665431   123  356789999999999884   6


Q ss_pred             EEEe
Q 045945          112 VIYT  115 (122)
Q Consensus       112 ~I~l  115 (122)
                      +|++
T Consensus        90 ~v~~   93 (93)
T d1l5pa_          90 VFEL   93 (93)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            7664

>d2bt6a1 d.15.4.1 (A:5-108) Adrenodoxin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin-related
domain: Adrenodoxin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.10  E-value=8.7e-12  Score=83.70  Aligned_cols=73  Identities=16%  Similarity=0.215  Sum_probs=54.0

Q ss_pred             cCCCCch--HHHHHHcCCCcCCC--CC-CcccCCCeeeeeeccccCCCC------CCCC-hhcccCCeEEeeceEECC--
Q 045945           44 FGLKSSS--FKVSAMAVYKLPYS--CR-AGACSTCAGLMVSGSVDQSDG------SFLD-DNQMEKGYVLTCIAYPKS--  109 (122)
Q Consensus        44 ~~~~~~~--L~a~~~~Gi~i~~~--Cr-~G~CGtCkv~vl~G~v~~~~~------~~Ls-~~e~~~g~~LaCqs~~~s--  109 (122)
                      +.++.|+  +++++++|+++++.  |+ .|.|++|++.+.+|..+....      ..|. ..+..+++||+||.++..  
T Consensus        17 i~~~~G~tLl~~~~~~gi~i~~~~~CgG~~~C~tC~V~v~~~~~~~l~~~~~~E~~~L~~~~~~~~~sRLaCQi~l~~~l   96 (104)
T d2bt6a1          17 TKGKIGDSLLDVVVQNNLDIDGFGACEGTLACSTCHLIFEQHIFEKLEAITDEENDMLDLAYGLTDRSRLGCQICLTKAM   96 (104)
T ss_dssp             EEEETTCBHHHHHHHTTCCCTTTTTTSSSSSBSTTEEECCHHHHTTSCCCCHHHHHHHTTCTTCCTTEEEGGGCBCCGGG
T ss_pred             EEeCCCchHHHHHHHcCCCcccccccCCccccceEEEEecccchhhcCCCCHHHHHHhhccCCCCcCeEEeeeCEeeccC
Confidence            4455555  89999999999876  65 899999999999986554321      1222 134567899999999975  


Q ss_pred             -CeEEEec
Q 045945          110 -DCVIYTH  116 (122)
Q Consensus       110 -dl~I~l~  116 (122)
                       +++|++|
T Consensus        97 dgl~V~vP  104 (104)
T d2bt6a1          97 DNMTVRVP  104 (104)
T ss_dssp             TTEEEECC
T ss_pred             CCEEEecC
Confidence             4788876

>d1ep3b2 c.25.1.3 (B:103-262) Dihydroorotate dehydrogenase B, PyrK subunit {Lactococcus lactis, isozyme B [TaxId: 1358]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Dihydroorotate dehydrogenase B, PyrK subunit
domain: Dihydroorotate dehydrogenase B, PyrK subunit
species: Lactococcus lactis, isozyme B [TaxId: 1358]

Probab=98.71  E-value=1.8e-09  Score=75.56  Aligned_cols=56  Identities=11%  Similarity=0.124  Sum_probs=42.1

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHHcCCCcCCCCCCcccCCCeeeeeeccccC
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAMAVYKLPYSCRAGACSTCAGLMVSGSVDQ   84 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~   84 (122)
                      .....++|+|||.+||+  .+.+++.+...-.        +.-...|+.|+||+|++++.+|++.+
T Consensus        86 ~~~~~~vy~CGP~~m~~~v~~~~~~~g~~~vs--------le~~m~Cg~GiCg~C~~~~~~g~~~~  143 (160)
T d1ep3b2          86 DFEVDALYTCGAPAMLKAVAKKYDQLERLYIS--------MESRMACGIGACYACVEHDKEDESHA  143 (160)
T ss_dssp             CSCCSEEEEESCHHHHHHHHHHTTTCSSEEEE--------CCCCCSSSSSSSCTTEEEETTEEEEE
T ss_pred             ccccceeeeeccchHHHHHHHHHHhcCCceEE--------ecccccCCCcccCcCcceecCCCCCe
Confidence            34468999999999999  6666666633221        23456899999999999999987653

>d1cqxa3 c.25.1.5 (A:262-403) Flavohemoglobin, C-terminal domain {Alcaligenes eutrophus [TaxId: 106590]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Alcaligenes eutrophus [TaxId: 106590]

Probab=97.69  E-value=3.5e-06  Score=56.48  Aligned_cols=36  Identities=8%  Similarity=0.091  Sum_probs=30.5

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSAM   56 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~~   56 (122)
                      ...++++|+|||.+||+  ++++++.|++++++|.+.+
T Consensus        98 ~~~~~~vyiCGp~~m~~~v~~~L~~~G~~~~~i~~E~F  135 (142)
T d1cqxa3          98 LLPDADYYICGPIPFMRMQHDALKNLGIHEARIHYEVF  135 (142)
T ss_dssp             CCTTCEEEEESSHHHHHHHHHHHHHTTCCGGGEEECCC
T ss_pred             ccCCceEEEECChhHHHHHHHHHHHcCCCHHHEEEEec
Confidence            34568999999999999  8899999999998776543

>d1krha2 c.25.1.2 (A:206-338) Benzoate dioxygenase reductase {Acinetobacter sp. [TaxId: 472]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Benzoate dioxygenase reductase
species: Acinetobacter sp. [TaxId: 472]

Probab=97.63  E-value=1.4e-06  Score=58.47  Aligned_cols=35  Identities=17%  Similarity=0.157  Sum_probs=29.5

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      +..+.++|+|||.+||+  ++.+++.|++++++|.+.
T Consensus        93 ~~~~~~vyiCGp~~m~~~v~~~L~~~Gv~~~~i~~E~  129 (133)
T d1krha2          93 NGGEVDVYLCGPVPMVEAVRSWLDTQGIQPANFLFEK  129 (133)
T ss_dssp             GGGCSEEEEEEEHHHHHHHHHHHHHHTCCCSEEEEEE
T ss_pred             ccccceEEEECCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            34578999999999999  889999999998876543

>d1qfja2 c.25.1.1 (A:98-232) NAD(P)H:flavin oxidoreductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: NAD(P)H:flavin oxidoreductase
species: Escherichia coli [TaxId: 562]

Probab=97.62  E-value=9.6e-06  Score=53.98  Aligned_cols=36  Identities=6%  Similarity=-0.033  Sum_probs=28.7

Q ss_pred             CCCCCeeEEcCChhhhh--HhH-HHHcCCCCchHHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSV-SKAFGLKSSSFKVSAM   56 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~-~~~~~~~~~~L~a~~~   56 (122)
                      ...+.++|+|||.+||+  ++. +...|+++++++.+.+
T Consensus        94 ~~~~~~~yvCGp~~m~~~~~~~L~~~~G~~~~~i~~E~F  132 (135)
T d1qfja2          94 TLAEHDIYIAGRFEMAKIARDLFCSERNAREDRLFGDAF  132 (135)
T ss_dssp             CCTTCEEEEESCHHHHHHHHHHHHHHSCCCGGGEECTHH
T ss_pred             CcccCceEeeCCHHHHHHHHHHHHHHcCCCHHHEEEEee
Confidence            34578999999999998  554 4689999998776654

>d1tvca2 c.25.1.2 (A:111-251) Methane monooxygenase component C, MmoC {Methylococcus capsulatus [TaxId: 414]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Methane monooxygenase component C, MmoC
species: Methylococcus capsulatus [TaxId: 414]

Probab=97.61  E-value=3.8e-06  Score=56.94  Aligned_cols=34  Identities=6%  Similarity=0.075  Sum_probs=29.0

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      ..+.++|+|||.+||+  ++++++.|+++++++.+.
T Consensus        99 ~~~~~vyiCGp~~m~~~v~~~l~~~Gv~~~~i~~E~  134 (141)
T d1tvca2          99 DANPDIYLCGPPGMIDAACELVRSRGIPGEQVFFEK  134 (141)
T ss_dssp             SSSSEEEEESSHHHHHHHHHHHHHHCCCCSEEEECC
T ss_pred             cccceeeccCCHHHHHHHHHHHHHcCCCHHHEEEEe
Confidence            4567899999999999  888899999998877654

>d1gvha3 c.25.1.5 (A:254-396) Flavohemoglobin, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Flavohemoglobin, C-terminal domain
domain: Flavohemoglobin, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=97.49  E-value=8.7e-06  Score=54.60  Aligned_cols=35  Identities=9%  Similarity=0.088  Sum_probs=30.0

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHHHHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFKVSA   55 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~a~~   55 (122)
                      .....++|+|||.+|++  ++.+++.|++++++|.+.
T Consensus       100 ~~~~~~~~iCGp~~m~~~v~~~L~~~G~~~~~i~~E~  136 (143)
T d1gvha3         100 SDPTMQFYLCGPVGFMQFTAKQLVDLGVKQENIHYEC  136 (143)
T ss_dssp             CCTTCEEEEESCHHHHHHHHHHHHHTTCCGGGEEEEC
T ss_pred             cccCcEEEEeCcHHHHHHHHHHHHHcCCCHHHEEEec
Confidence            44578999999999999  888999999999877553

>d1umka2 c.25.1.1 (A:154-300) cytochrome b5 reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: cytochrome b5 reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.44  E-value=1.9e-05  Score=53.45  Aligned_cols=31  Identities=10%  Similarity=0.097  Sum_probs=26.1

Q ss_pred             CCCCeeEEcCChhhhh---HhHHHHcCCCCchHH
Q 045945           22 TRMKFPLVKSPGSLVS---RSVSKAFGLKSSSFK   52 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L~   52 (122)
                      ..+.++|+|||.+||+   +.+++++|+++++++
T Consensus       112 ~~~~~vyiCGP~~m~~~~~~~~L~~~G~~~e~i~  145 (147)
T d1umka2         112 EEEPLVLMCGPPPMIQYACLPNLDHVGHPTERCF  145 (147)
T ss_dssp             GGCCEEEEESCHHHHHHTTHHHHHHHTCCGGGEE
T ss_pred             cCCcEEEEeCCHHHHHHHHHHHHHHcCCCHHHEE
Confidence            4567899999999997   678899999988753

>d2piaa2 c.25.1.2 (A:104-223) Phthalate dioxygenase reductase {Pseudomonas cepacia, db01 [TaxId: 292]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Aromatic dioxygenase reductase-like
domain: Phthalate dioxygenase reductase
species: Pseudomonas cepacia, db01 [TaxId: 292]

Probab=97.38  E-value=1.1e-05  Score=52.58  Aligned_cols=30  Identities=13%  Similarity=0.170  Sum_probs=23.4

Q ss_pred             CCCCCeeEEcCChhhhh--HhHHHHcCCCCchHH
Q 045945           21 PTRMKFPLVKSPGSLVS--RSVSKAFGLKSSSFK   52 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~L~   52 (122)
                      .+.+.++|+|||.+||+  ++++  .+++++++|
T Consensus        87 ~~~~~~~y~CGp~~mi~~v~~~~--~~~~~~~ih  118 (120)
T d2piaa2          87 SKPAQHVYCCGPQALMDTVRDMT--GHWPSGTVH  118 (120)
T ss_dssp             CCTTEEEEEESCHHHHHHHHHHT--TTSCTTCEE
T ss_pred             CCCcCEEEEeCCHHHHHHHHHHH--cCCCHHHee
Confidence            44579999999999999  6554  378877665

>d2cnda2 c.25.1.1 (A:125-270) Nitrate reductase {Corn (Zea mays) [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Nitrate reductase
species: Corn (Zea mays) [TaxId: 4577]

Probab=97.36  E-value=4.2e-05  Score=50.61  Aligned_cols=31  Identities=6%  Similarity=0.068  Sum_probs=25.7

Q ss_pred             CCCCCeeEEcCChhhhh---HhHHHHcCCCCchH
Q 045945           21 PTRMKFPLVKSPGSLVS---RSVSKAFGLKSSSF   51 (122)
Q Consensus        21 ~~~~~~~YvCGP~~fm~---~~~~~~~~~~~~~L   51 (122)
                      +..+.++|+|||.+||+   ++.+.++|++++++
T Consensus       109 ~~~~~~vyiCGp~~m~~~av~~~L~~~G~~~~~i  142 (146)
T d2cnda2         109 GGDDTLALACGPPPMIQFAISPNLEKMKYDMANS  142 (146)
T ss_dssp             CSSSEEEEEECCHHHHHTTTHHHHHTTTCCHHHH
T ss_pred             CCCCcEEEEECCHHHHHHHHHHHHHHcCCCHHHE
Confidence            34567899999999997   67889999998764

>d1a8pa2 c.25.1.1 (A:101-258) Ferredoxin reductase (flavodoxin reductase) {Azotobacter vinelandii [TaxId: 354]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Azotobacter vinelandii [TaxId: 354]

Probab=97.14  E-value=9.9e-05  Score=49.57  Aligned_cols=29  Identities=24%  Similarity=0.320  Sum_probs=25.5

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCch
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS   50 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~   50 (122)
                      +...++|+|||.+||+  .+++.+.|++++.
T Consensus       111 ~~~~~~yiCGp~~m~~~v~~~L~~~G~~~~~  141 (158)
T d1a8pa2         111 PQDDRAMICGSPSMLDESCEVLDGFGLKISP  141 (158)
T ss_dssp             TTTEEEEEEECHHHHHHHHHHHHHTTCCBCS
T ss_pred             cccceEEEECCHHHHHHHHHHHHHcCCCccC
Confidence            4578999999999999  8888999998875

>d3c8ya2 d.15.4.2 (A:1-126) Fe-only hydrogenase, N-terminal domain {Clostridium pasteurianum [TaxId: 1501]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fe-only hydrogenase, N-terminal domain
species: Clostridium pasteurianum [TaxId: 1501]

Probab=97.08  E-value=0.00016  Score=49.32  Aligned_cols=58  Identities=19%  Similarity=0.401  Sum_probs=44.9

Q ss_pred             HcCCCCch--HHHHHHcCCCcCCCC------C-CcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEECCCeEE
Q 045945           43 AFGLKSSS--FKVSAMAVYKLPYSC------R-AGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYPKSDCVI  113 (122)
Q Consensus        43 ~~~~~~~~--L~a~~~~Gi~i~~~C------r-~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~~sdl~I  113 (122)
                      .+.+++|+  |+++.++||.||+-|      . .|.|+.|.|.+ +|                .+.+-+|.+.+...++|
T Consensus        10 ~v~~~~G~til~aa~~~gi~IP~lC~~~~l~~~~G~Cr~C~Vev-~G----------------~~~v~AC~t~v~~GM~V   72 (126)
T d3c8ya2          10 QFNTDEDTTILKFARDNNIDISALCFLNNCNNDINKCEICTVEV-EG----------------TGLVTACDTLIEDGMII   72 (126)
T ss_dssp             EEEECCCCBHHHHHHHTTCCCCCSSCBTTBCCSSSCCCTTEEEE-TT----------------TEEEEGGGCBCCTTCEE
T ss_pred             EEEeCCCChHHHHHHHcCCccchhhhccCCCCCCccceeEEEEE-cc----------------CccccccccCCCCCCEE
Confidence            44566776  999999999999999      3 48999999987 22                12466899999888888


Q ss_pred             EecC
Q 045945          114 YTHK  117 (122)
Q Consensus       114 ~l~~  117 (122)
                      ....
T Consensus        73 ~T~s   76 (126)
T d3c8ya2          73 NTNS   76 (126)
T ss_dssp             ESSC
T ss_pred             EeCC
Confidence            7653

>d2bmwa2 c.25.1.1 (A:142-303) Ferredoxin reductase (flavodoxin reductase) {Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Cyanobacterium (Anabaena sp.), pcc 7119 [TaxId: 1167]

Probab=97.05  E-value=9.2e-05  Score=49.71  Aligned_cols=29  Identities=10%  Similarity=0.117  Sum_probs=24.6

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCch
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS   50 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~   50 (122)
                      ..+.++|+|||.+|++  ++++.+++++++.
T Consensus       112 ~~~~~vyvCGp~~m~~~v~~~L~~~g~~~~~  142 (162)
T d2bmwa2         112 NQKTHTYICGPPPMEEGIDAALSAAAAKEGV  142 (162)
T ss_dssp             STTEEEEEEECTTHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCEEEEECCHHHHHHHHHHHHHhhcccCc
Confidence            4567899999999999  7788888888776

>d1fnda2 c.25.1.1 (A:155-314) Ferredoxin reductase (flavodoxin reductase) {Spinach (Spinacia oleracea) [TaxId: 3562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Spinach (Spinacia oleracea) [TaxId: 3562]

Probab=96.82  E-value=0.00022  Score=47.98  Aligned_cols=29  Identities=0%  Similarity=-0.007  Sum_probs=22.5

Q ss_pred             CCCCeeEEcCChhhhh--HhHHHHcCCCCch
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSKAFGLKSSS   50 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~~~~~~~~~   50 (122)
                      ..++++|+|||.+||+  ++++.+++..++.
T Consensus       110 ~~~~~vyiCGp~~m~~~v~~~l~~~~~~~g~  140 (160)
T d1fnda2         110 KDNTYVYMCGLKGMEKGIDDIMVSLAAAEGI  140 (160)
T ss_dssp             STTEEEEEEECHHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCCEEEEeCCHHHHHHHHHHHHHHHHhcch
Confidence            4568899999999999  7777777666543

>d1jb9a2 c.25.1.1 (A:163-316) Ferredoxin reductase (flavodoxin reductase) {Maize (Zea mays), root isoform [TaxId: 4577]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Maize (Zea mays), root isoform [TaxId: 4577]

Probab=96.43  E-value=0.00036  Score=46.63  Aligned_cols=23  Identities=4%  Similarity=-0.067  Sum_probs=17.6

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFG   45 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~   45 (122)
                      .++++|+|||.+||+  ++++++++
T Consensus       105 ~~~~~yvCGp~~mm~~v~~~L~~~~  129 (154)
T d1jb9a2         105 GGAHIYFCGLKGMMPGIQDTLKKVA  129 (154)
T ss_dssp             TTCEEEEEECGGGHHHHHHHHHHHH
T ss_pred             CCCEEEEECCHHHHHHHHHHHHHHH
Confidence            357899999999998  55555543

>d2bs2b2 d.15.4.2 (B:1-106) Fumarate reductase iron-sulfur protein, N-terminal domain {Wolinella succinogenes [TaxId: 844]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Wolinella succinogenes [TaxId: 844]

Probab=96.21  E-value=0.0011  Score=43.70  Aligned_cols=33  Identities=27%  Similarity=0.748  Sum_probs=26.4

Q ss_pred             cCCCcCCCCCCcccCCCeeeeeeccccCCCCCCCChhcccCCeEEeeceEE
Q 045945           57 AVYKLPYSCRAGACSTCAGLMVSGSVDQSDGSFLDDNQMEKGYVLTCIAYP  107 (122)
Q Consensus        57 ~Gi~i~~~Cr~G~CGtCkv~vl~G~v~~~~~~~Ls~~e~~~g~~LaCqs~~  107 (122)
                      .-+.+.++||.|+||+|.++| .|..                 +|||+++.
T Consensus        49 ~sl~fr~sCr~giCGsCam~I-NG~~-----------------~lAC~t~v   81 (106)
T d2bs2b2          49 PDLNFDFVCRAGICGSCGMMI-NGRP-----------------SLACRTLT   81 (106)
T ss_dssp             TTCCCCCSSSSSSSCTTEEEE-TTEE-----------------EEGGGCBG
T ss_pred             CcEEEEeCcCCCCCCcceEEE-CCcc-----------------ccceeeee
Confidence            347899999999999999987 4432                 67888765

>d1fdra2 c.25.1.1 (A:101-248) Ferredoxin reductase (flavodoxin reductase) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: Reductases
domain: Ferredoxin reductase (flavodoxin reductase)
species: Escherichia coli [TaxId: 562]

Probab=96.03  E-value=0.0015  Score=43.20  Aligned_cols=28  Identities=7%  Similarity=0.095  Sum_probs=20.6

Q ss_pred             CCCCeeEEcCChhhhh--HhHHH-HcCCCCc
Q 045945           22 TRMKFPLVKSPGSLVS--RSVSK-AFGLKSS   49 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm~--~~~~~-~~~~~~~   49 (122)
                      +...++|+|||.+||+  .+.+. ..|++++
T Consensus       104 ~~~~~vyiCGp~~m~~~v~~~L~e~~g~~e~  134 (148)
T d1fdra2         104 KETSHVMLCGNPQMVRDTQQLLKETRQMTKH  134 (148)
T ss_dssp             TTTEEEEEEECHHHHHHHHHHHHHHHCCCBC
T ss_pred             cccceEEEECCHHHHHHHHHHHHHhcCCCcc
Confidence            3456799999999999  66654 4566654

>d1kf6b2 d.15.4.2 (B:1-105) Fumarate reductase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Fumarate reductase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.99  E-value=0.0018  Score=42.61  Aligned_cols=23  Identities=22%  Similarity=0.663  Sum_probs=19.6

Q ss_pred             cCCCcCCCCCCcccCCCeeeeeec
Q 045945           57 AVYKLPYSCRAGACSTCAGLMVSG   80 (122)
Q Consensus        57 ~Gi~i~~~Cr~G~CGtCkv~vl~G   80 (122)
                      .-+.+.++||.|+||+|.++| .|
T Consensus        49 ~sLsfr~sCr~giCGsCam~I-NG   71 (105)
T d1kf6b2          49 PDLSYRWSCRMAICGSCGMMV-NN   71 (105)
T ss_dssp             TTCCCCCCCSSSSSCCCEEEE-TT
T ss_pred             CcceEEeccCCCCCCCCeEEE-CC
Confidence            347789999999999999987 44

>d1f20a2 c.25.1.4 (A:1233-1397) Neuronal nitric-oxide synthase FAD/NADP+ domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Neuronal nitric-oxide synthase FAD/NADP+ domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.95  E-value=0.0006  Score=46.45  Aligned_cols=26  Identities=4%  Similarity=-0.104  Sum_probs=19.9

Q ss_pred             CCCeeEEcCChhhhh--HhHHHHcCCCC
Q 045945           23 RMKFPLVKSPGSLVS--RSVSKAFGLKS   48 (122)
Q Consensus        23 ~~~~~YvCGP~~fm~--~~~~~~~~~~~   48 (122)
                      .++++|+|||.+||+  .+++.++.+..
T Consensus       110 ~~~~~yiCGp~~M~~~v~~~L~~i~~~~  137 (165)
T d1f20a2         110 QGGHIYVCGDVTMAADVLKAIQRIMTQQ  137 (165)
T ss_dssp             SCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred             CCcEEEEECCcchHHHHHHHHHHHHHHh
Confidence            578999999999999  66666654443

>d1nekb2 d.15.4.2 (B:1-106) Succinate dehydogenase iron-sulfur protein, N-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Succinate dehydogenase iron-sulfur protein, N-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.95  E-value=0.0017  Score=42.77  Aligned_cols=25  Identities=28%  Similarity=0.481  Sum_probs=20.9

Q ss_pred             HcCCCcCCCCCCcccCCCeeeeeecc
Q 045945           56 MAVYKLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        56 ~~Gi~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      ..-+...++||.|+||+|.++| .|.
T Consensus        46 D~sLsfr~sCr~giCGsCam~I-NG~   70 (106)
T d1nekb2          46 DPSLSFRRSCREGVCGSDGLNM-NGK   70 (106)
T ss_dssp             CTTCCCCCCSSSSCSCTTEEEE-TTE
T ss_pred             CCCEEEEcCCCCCCCCcceEEE-cCc
Confidence            3468899999999999999988 453

>d1dgja2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio desulfuricans [TaxId: 876]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio desulfuricans [TaxId: 876]

Probab=93.34  E-value=0.023  Score=35.41  Aligned_cols=30  Identities=20%  Similarity=0.550  Sum_probs=23.4

Q ss_pred             HHHHHHc-CC-CcCCCCCCcccCCCeeeeeecc
Q 045945           51 FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        51 L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      +++++.. |+ ...++|..|.||+|-|.+ +|+
T Consensus        24 l~~LR~~~gltgtK~GC~~G~CGACtV~v-dG~   55 (80)
T d1dgja2          24 VDVLRSQLQLTSVKVGCGKGQCGACTVIL-DGK   55 (80)
T ss_dssp             HHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TTE
T ss_pred             HHHHhhhhCCceeccCCCCCCCCeeEEEE-CCe
Confidence            6777643 65 578999999999999976 554

>d1ddga2 c.25.1.4 (A:447-599) Sulfite reductase flavoprotein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: Sulfite reductase flavoprotein
species: Escherichia coli [TaxId: 562]

Probab=93.09  E-value=0.0079  Score=39.75  Aligned_cols=29  Identities=3%  Similarity=-0.158  Sum_probs=20.5

Q ss_pred             CCCeeEEcCChhhh-h--HhHHHHcCCCCchH
Q 045945           23 RMKFPLVKSPGSLV-S--RSVSKAFGLKSSSF   51 (122)
Q Consensus        23 ~~~~~YvCGP~~fm-~--~~~~~~~~~~~~~L   51 (122)
                      .+.++|+|||..+| +  +.++.+++++.+.+
T Consensus        99 ~~~~~yiCG~p~~~~~~v~~~L~~~~~~~~~~  130 (153)
T d1ddga2          99 DGAHIYVCGDANRMAKDVEQALLEVIAEFGGM  130 (153)
T ss_dssp             TTCEEEEEECTTTHHHHHHHHHHHHHHHTTTC
T ss_pred             cCCEEEEECCCcchHHHHHHHHHHHHHHhcCC
Confidence            46789999977665 5  67777776666553

>d1t3qa2 d.15.4.2 (A:7-87) Quinoline 2-oxidoreductase small subunit QorS, N-domain {Pseudomonas putida [TaxId: 303]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Quinoline 2-oxidoreductase small subunit QorS, N-domain
species: Pseudomonas putida [TaxId: 303]

Probab=93.09  E-value=0.027  Score=35.07  Aligned_cols=36  Identities=17%  Similarity=0.383  Sum_probs=25.1

Q ss_pred             CCCch--HHHHHH-cCC-CcCCCCCCcccCCCeeeeeeccc
Q 045945           46 LKSSS--FKVSAM-AVY-KLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        46 ~~~~~--L~a~~~-~Gi-~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      ++++.  +++++. .|+ ...++|..|.||+|.|.+ +|+.
T Consensus        19 ~~~~~~Ll~~LR~~l~ltg~K~gC~~G~CGACtVlv-dG~~   58 (81)
T d1t3qa2          19 VEPRMHLADALREVVGLTGTKIGCEQGVCGSCTILI-DGAP   58 (81)
T ss_dssp             ECTTSBHHHHHHHTTCCTTSCCSCSSSSSCTTEEEE-TTEE
T ss_pred             cCCCCCHHHHHhhhhCCcccccCCCCcccCeeEEEE-CCCE
Confidence            44444  666654 354 488999999999999965 6643

>d1vlba2 d.15.4.2 (A:1-80) Aldehyde oxidoreductase, N-terminal domain {Desulfovibrio gigas [TaxId: 879]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Aldehyde oxidoreductase, N-terminal domain
species: Desulfovibrio gigas [TaxId: 879]

Probab=92.13  E-value=0.043  Score=34.12  Aligned_cols=36  Identities=19%  Similarity=0.502  Sum_probs=25.6

Q ss_pred             CCCch--HHHHHHc-CC-CcCCCCCCcccCCCeeeeeeccc
Q 045945           46 LKSSS--FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        46 ~~~~~--L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      ++++.  +++++.. |+ ...++|+.|.||+|-+.+ +|+.
T Consensus        17 v~~~~~Lld~LR~~lgltg~K~gC~~G~CGACtVlv-dG~~   56 (80)
T d1vlba2          17 VDAEALLSDVLRQQLGLTGVKVGCEQGQCGACSVIL-DGKV   56 (80)
T ss_dssp             ECTTSBHHHHHHHTTCCTTSCCSSSSSSSCTTEEEE-TTEE
T ss_pred             cCCCCCHHHHHhHhhCCcccccCcCcCCCCeeEEEE-CCcE
Confidence            44444  6777643 54 588999999999999865 5543

>d1rm6c2 d.15.4.2 (C:1-81) 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain {Thauera aromatica [TaxId: 59405]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: 4-hydroxybenzoyl-CoA reductase gamma subunit HrcC, N-terminal domain
species: Thauera aromatica [TaxId: 59405]

Probab=91.22  E-value=0.097  Score=32.42  Aligned_cols=31  Identities=16%  Similarity=0.374  Sum_probs=22.8

Q ss_pred             HHHHHHc-CCC-cCCCCCCcccCCCeeeeeeccc
Q 045945           51 FKVSAMA-VYK-LPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        51 L~a~~~~-Gi~-i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      |++++.. |+. ...+|+.|.||+|-|.| +|+.
T Consensus        25 l~~LR~~lgltgtK~gC~~G~CGACTVlv-dG~~   57 (81)
T d1rm6c2          25 LDYLRETVGLTGTKQGCDGGECGACTVLV-DDRP   57 (81)
T ss_dssp             HHHHHHTTCCTTSCCCSSSSSSCTTEEEE-TTEE
T ss_pred             HHHHHHhhCCcccccCCccccCCccEEeE-CCce
Confidence            5666543 543 78999999999999965 5643

>d1ffva2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Hydrogenophaga pseudoflava [TaxId: 47421]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Hydrogenophaga pseudoflava [TaxId: 47421]

Probab=91.11  E-value=0.067  Score=33.07  Aligned_cols=37  Identities=11%  Similarity=0.278  Sum_probs=25.8

Q ss_pred             CCCch--HHHHHHc-CC-CcCCCCCCcccCCCeeeeeecccc
Q 045945           46 LKSSS--FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSGSVD   83 (122)
Q Consensus        46 ~~~~~--L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G~v~   83 (122)
                      ++++.  +++++.. |+ ....+|+.|.||+|-|.+ +|+..
T Consensus        17 v~~~~~Ll~~LR~~~gl~gtK~GC~~G~CGaCTVlv-dg~~v   57 (79)
T d1ffva2          17 VEPRTLLIHFLREELNLTGAHIGCETSHCGACTVDI-DGRSV   57 (79)
T ss_dssp             ECTTCBHHHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTEEE
T ss_pred             CCCCCCHHHHHhhhcCCcccccCCccccccccEEec-CCcEE
Confidence            44444  6666553 55 478899999999999965 66543

>d1jroa2 d.15.4.2 (A:1-84) Xanthine dehydrogenase chain A, N-terminal domain {Rhodobacter capsulatus [TaxId: 1061]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine dehydrogenase chain A, N-terminal domain
species: Rhodobacter capsulatus [TaxId: 1061]

Probab=90.27  E-value=0.13  Score=32.01  Aligned_cols=27  Identities=15%  Similarity=0.466  Sum_probs=21.0

Q ss_pred             HHHHHHcCC-CcCCCCCCcccCCCeeee
Q 045945           51 FKVSAMAVY-KLPYSCRAGACSTCAGLM   77 (122)
Q Consensus        51 L~a~~~~Gi-~i~~~Cr~G~CGtCkv~v   77 (122)
                      +++++..|+ ....+|..|.||+|.|.|
T Consensus        24 l~~LR~~~ltgtK~GC~~G~CGACtVlv   51 (84)
T d1jroa2          24 LELLRAEGLTGTKEGCNEGDCGACTVMI   51 (84)
T ss_dssp             HHHHHHTTCTTSCCSCSSSSSCTTEEEE
T ss_pred             HHHHHHCCCccCccCcCCcccceeEEEE
Confidence            455555554 488999999999999987

>d1ja1a3 c.25.1.4 (A:519-678) NADPH-cytochrome p450 reductase {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Ferredoxin reductase-like, C-terminal NADP-linked domain
superfamily: Ferredoxin reductase-like, C-terminal NADP-linked domain
family: NADPH-cytochrome p450 reductase-like
domain: NADPH-cytochrome p450 reductase
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=89.59  E-value=0.054  Score=36.79  Aligned_cols=15  Identities=7%  Similarity=-0.133  Sum_probs=11.3

Q ss_pred             CCCCeeEEcCChhhh
Q 045945           22 TRMKFPLVKSPGSLV   36 (122)
Q Consensus        22 ~~~~~~YvCGP~~fm   36 (122)
                      ..++++|+|||...|
T Consensus       104 ~~~~~vYvCG~~~~M  118 (160)
T d1ja1a3         104 EGGAHIYVAGDARNM  118 (160)
T ss_dssp             TSCCEEEEEEETTTH
T ss_pred             cCCcEEEEeCCCccc
Confidence            357899999986544

>d1n62a2 d.15.4.2 (A:3-81) Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain {Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Carbone monoxide (CO) dehydrogenase iron-sulfur protein, N-domain
species: Oligotropha carboxidovorans, formerly Pseudomonas carboxydovorans [TaxId: 40137]

Probab=89.40  E-value=0.18  Score=31.03  Aligned_cols=31  Identities=13%  Similarity=0.296  Sum_probs=23.6

Q ss_pred             HHHHHH-cCC-CcCCCCCCcccCCCeeeeeeccc
Q 045945           51 FKVSAM-AVY-KLPYSCRAGACSTCAGLMVSGSV   82 (122)
Q Consensus        51 L~a~~~-~Gi-~i~~~Cr~G~CGtCkv~vl~G~v   82 (122)
                      +++++. .|. ...++|..|.||+|-|.+ +|..
T Consensus        24 l~~LR~~~~ltgtK~GC~~G~CGaCTVlv-dg~~   56 (79)
T d1n62a2          24 IHFIREQQNLTGAHIGCDTSHCGACTVDL-DGMS   56 (79)
T ss_dssp             HHHHHHTSCCTTSCCCCSSSCSCTTEEEE-TTEE
T ss_pred             HHHHhhhcCCcccccCCccccccccEEEe-CCcE
Confidence            666654 365 589999999999999854 6654

>d1v97a2 d.15.4.2 (A:3-92) Xanthine oxidase, N-terminal domain {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a+b)
fold: beta-Grasp (ubiquitin-like)
superfamily: 2Fe-2S ferredoxin-like
family: 2Fe-2S ferredoxin domains from multidomain proteins
domain: Xanthine oxidase, N-terminal domain
species: Cow (Bos taurus) [TaxId: 9913]

Probab=87.64  E-value=0.3  Score=30.59  Aligned_cols=30  Identities=17%  Similarity=0.373  Sum_probs=22.6

Q ss_pred             HHHHHHc-CC-CcCCCCCCcccCCCeeeeeecc
Q 045945           51 FKVSAMA-VY-KLPYSCRAGACSTCAGLMVSGS   81 (122)
Q Consensus        51 L~a~~~~-Gi-~i~~~Cr~G~CGtCkv~vl~G~   81 (122)
                      |++++.. |+ ....+|..|.||+|-|-| +|.
T Consensus        25 l~~LR~~~~ltGtK~GC~~G~CGACTVlv-~~~   56 (90)
T d1v97a2          25 LAYLRRKLGLRGTKLGCGEGGCGACTVML-SKY   56 (90)
T ss_dssp             HHHHHHTSCCTTSCCSCSSSSSCTTEEEE-EEE
T ss_pred             HHHHHhhcCCCccccCcCCcccceeEEEE-ccc
Confidence            6766543 54 488999999999999954 554