Citrus Sinensis ID: 045955
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 139 | ||||||
| 312599819 | 154 | late embryogenesis abundant protein grou | 0.942 | 0.850 | 0.512 | 1e-27 | |
| 67973216 | 163 | late embryogenesis abundant protein [Cat | 0.848 | 0.723 | 0.528 | 3e-25 | |
| 351727184 | 140 | seed maturation protein PM30 [Glycine ma | 0.856 | 0.85 | 0.546 | 1e-24 | |
| 126080 | 136 | RecName: Full=Late embryogenesis abundan | 0.920 | 0.941 | 0.523 | 5e-23 | |
| 324103765 | 156 | LEA5 [Vitis amurensis] | 0.863 | 0.769 | 0.496 | 2e-22 | |
| 147799439 | 380 | hypothetical protein VITISV_025029 [Viti | 0.863 | 0.315 | 0.476 | 1e-21 | |
| 225442847 | 156 | PREDICTED: late embryogenesis abundant p | 0.863 | 0.769 | 0.483 | 4e-21 | |
| 22653807 | 163 | RecName: Full=Late embryogenesis abundan | 0.899 | 0.766 | 0.466 | 9e-21 | |
| 353703788 | 171 | late embryogenesis abundant protein [Sol | 0.949 | 0.771 | 0.426 | 9e-21 | |
| 224054136 | 140 | predicted protein [Populus trichocarpa] | 0.870 | 0.864 | 0.454 | 1e-20 |
| >gi|312599819|gb|ADQ91835.1| late embryogenesis abundant protein group 3 protein [Arachis hypogaea] | Back alignment and taxonomy information |
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Score = 127 bits (320), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 79/154 (51%), Positives = 96/154 (62%), Gaps = 23/154 (14%)
Query: 1 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQA----------------------AKDR 38
MASHDQS+RAGE KGQT+E+TNQ M NV DKAQA AKD+
Sbjct: 1 MASHDQSFRAGEAKGQTQEKTNQMMSNVGDKAQAVKDKTAQEAHSAWDKTAQTAQAAKDK 60
Query: 39 TYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTE 98
T +AAQ A+D++SETAQ + +A TA A + K E GQAT E A++ K+ GG L+QT
Sbjct: 61 TQQAAQTARDRSSETAQNTRAKAQNTAGATRDKASEMGQATRESAQSGKDNAGGFLQQTG 120
Query: 99 EKVKDAAQSAADAVKHTFGFGGAGEEEERYGDRD 132
EKVK AQ AADAVKHTFG E+E + RD
Sbjct: 121 EKVKGMAQGAADAVKHTFGM-APHEDEHEHPRRD 153
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Source: Arachis hypogaea Species: Arachis hypogaea Genus: Arachis Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|67973216|gb|AAY84145.1| late embryogenesis abundant protein [Catharanthus roseus] | Back alignment and taxonomy information |
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| >gi|351727184|ref|NP_001237152.1| seed maturation protein PM30 [Glycine max] gi|4838147|gb|AAD30864.1|AF117884_1 seed maturation protein PM30 [Glycine max] gi|255627639|gb|ACU14164.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|126080|sp|P13939.1|LEAD7_GOSHI RecName: Full=Late embryogenesis abundant protein D-7; Short=LEA D-7 gi|18497|emb|CAA33194.1| D 29 protein [Gossypium hirsutum] gi|18505|emb|CAA31589.1| D-7 Lea protein [Gossypium hirsutum] gi|226551|prf||1601521A Lea D-7 gene | Back alignment and taxonomy information |
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| >gi|324103765|gb|ADY17817.1| LEA5 [Vitis amurensis] | Back alignment and taxonomy information |
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| >gi|147799439|emb|CAN61339.1| hypothetical protein VITISV_025029 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|225442847|ref|XP_002285360.1| PREDICTED: late embryogenesis abundant protein Dc3 isoform 1 [Vitis vinifera] gi|297743398|emb|CBI36265.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|22653807|sp|P83442.1|LEAD3_DAUCA RecName: Full=Late embryogenesis abundant protein Dc3 | Back alignment and taxonomy information |
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| >gi|353703788|ref|NP_001238798.1| late embryogenesis abundant protein [Solanum lycopersicum] gi|302777019|gb|ADL70200.1| late embryogenesis abundant protein [Solanum lycopersicum] | Back alignment and taxonomy information |
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| >gi|224054136|ref|XP_002298109.1| predicted protein [Populus trichocarpa] gi|222845367|gb|EEE82914.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 139 | ||||||
| TAIR|locus:2093307 | 225 | AT3G15670 "AT3G15670" [Arabido | 0.827 | 0.511 | 0.357 | 7.7e-16 | |
| TAIR|locus:2035109 | 169 | LEA7 "AT1G52690" [Arabidopsis | 0.748 | 0.615 | 0.370 | 1.1e-14 | |
| TAIR|locus:2140842 | 109 | UNE15 "AT4G13560" [Arabidopsis | 0.712 | 0.908 | 0.290 | 5.9e-09 | |
| TAIR|locus:2158735 | 331 | AT5G44310 "AT5G44310" [Arabido | 0.769 | 0.323 | 0.280 | 7.1e-07 | |
| TAIR|locus:2164012 | 67 | AT5G53820 "AT5G53820" [Arabido | 0.424 | 0.880 | 0.414 | 1e-06 | |
| TAIR|locus:2166630 | 67 | AT5G38760 "AT5G38760" [Arabido | 0.446 | 0.925 | 0.369 | 1.6e-06 | |
| TAIR|locus:2085171 | 479 | AT3G53040 "AT3G53040" [Arabido | 0.697 | 0.202 | 0.28 | 2.2e-06 | |
| TAIR|locus:2076844 | 68 | AT3G02480 "AT3G02480" [Arabido | 0.395 | 0.808 | 0.424 | 1.5e-05 | |
| WB|WBGene00002263 | 1397 | lea-1 [Caenorhabditis elegans | 0.755 | 0.075 | 0.238 | 0.00016 | |
| TAIR|locus:2133144 | 266 | AT4G21020 [Arabidopsis thalian | 0.755 | 0.394 | 0.281 | 2.6e-05 |
| TAIR|locus:2093307 AT3G15670 "AT3G15670" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
Identities = 45/126 (35%), Positives = 66/126 (52%)
Query: 1 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRT-----------YEAAQQAKDK 49
MAS+ QSY+AGE +G+ +E+T Q M +RDKA+ +D+T +E AQ AKDK
Sbjct: 1 MASNQQSYKAGETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDK 60
Query: 50 TSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAA 109
TS+TAQ A+Q+A TA++ K+KT Q +K ++A A
Sbjct: 61 TSQTAQAAQQKAHETAQSAKEKTSQTAQTAQQKAHETTQAAKEKTSQAGDKAREAKDKAG 120
Query: 110 DAVKHT 115
+ T
Sbjct: 121 SYLSET 126
|
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| TAIR|locus:2035109 LEA7 "AT1G52690" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2140842 UNE15 "AT4G13560" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2158735 AT5G44310 "AT5G44310" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2164012 AT5G53820 "AT5G53820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2166630 AT5G38760 "AT5G38760" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2085171 AT3G53040 "AT3G53040" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| TAIR|locus:2076844 AT3G02480 "AT3G02480" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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| WB|WBGene00002263 lea-1 [Caenorhabditis elegans (taxid:6239)] | Back alignment and assigned GO terms |
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| TAIR|locus:2133144 AT4G21020 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 139 | |||
| KOG4744 | 308 | consensus Uncharacterized conserved protein [Funct | 99.3 | |
| KOG4744 | 308 | consensus Uncharacterized conserved protein [Funct | 99.19 | |
| PF02987 | 44 | LEA_4: Late embryogenesis abundant protein; InterP | 97.81 | |
| PF02987 | 44 | LEA_4: Late embryogenesis abundant protein; InterP | 97.71 | |
| PF05957 | 94 | DUF883: Bacterial protein of unknown function (DUF | 94.31 | |
| PF05957 | 94 | DUF883: Bacterial protein of unknown function (DUF | 92.92 | |
| COG3237 | 67 | Uncharacterized protein conserved in bacteria [Fun | 91.32 | |
| PF12732 | 74 | YtxH: YtxH-like protein; InterPro: IPR024623 This | 91.06 | |
| PF12732 | 74 | YtxH: YtxH-like protein; InterPro: IPR024623 This | 88.29 |
| >KOG4744 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.30 E-value=3.7e-11 Score=101.75 Aligned_cols=129 Identities=31% Similarity=0.412 Sum_probs=82.2
Q ss_pred hhhhhHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-------------------HHHHHHHhHHHHHHH
Q 045955 4 HDQSYRAGEVKGQTEERTNQTMENVRDKAQ-------AAKDRTYEA-------------------AQQAKDKTSETAQQA 57 (139)
Q Consensus 4 ~~~s~~Age~k~~aqeKa~e~~~~a~ekA~-------~Akdka~e~-------------------a~~akdka~e~a~~a 57 (139)
+.++++||++++.+.+|+|++++.+.++++ +++|++.+. +..+++++.+.++.+
T Consensus 85 ~~a~~kA~~a~~~A~eKag~A~d~a~dka~s~kD~a~qakDkA~~~a~~~~d~A~D~~~~~a~DKA~~AkdktkdkA~sa 164 (308)
T KOG4744|consen 85 DKASDKAGEAKDKAYEKAGSAKDTAKDKAGSAKDKASQAKDKAYEAAGLVKDSAYDKTKEKAKDKAGSAKDKAKDKAESA 164 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHH
Confidence 358999999999999999999998888775 333333222 444555555566666
Q ss_pred HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHh-------hhhhhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCccccccC
Q 045955 58 KQRAAGTAEAGKQKTQETGQATGEKAEAAKEK-------TGGILKQTEEKVKDAAQSAADAVKHTFGFGGAGEEEERYGD 130 (139)
Q Consensus 58 keka~ea~~aakeKas~aa~~akekA~e~kdk-------t~~~~qq~gE~vK~~A~~A~davK~t~g~~~~~~~~~~~~g 130 (139)
++++.++++.+.+++.++.+.++++++..++. +...+..+.+.+|++++.+.+..++......+...+....+
T Consensus 165 keka~e~a~sA~dkA~dake~Ak~~A~d~~d~a~e~~~~A~dk~~et~e~~Kdka~d~~e~A~d~a~~~k~~a~~~~~~~ 244 (308)
T KOG4744|consen 165 KEKAGEAADSARDKAADAKESAKNKAEDTKDSAPEAAGSAKDKAAETAEKAKDKAQDAKEKAKDKAQTVKEKAGEAAEKT 244 (308)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence 66666666666666666655555555544443 66777777777777777777776655444444333433333
Q ss_pred CC
Q 045955 131 RD 132 (139)
Q Consensus 131 ~d 132 (139)
+|
T Consensus 245 ~d 246 (308)
T KOG4744|consen 245 KE 246 (308)
T ss_pred hh
Confidence 33
|
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| >KOG4744 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
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| >PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress | Back alignment and domain information |
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| >PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress | Back alignment and domain information |
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| >PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD | Back alignment and domain information |
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| >PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD | Back alignment and domain information |
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| >COG3237 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
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| >PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria | Back alignment and domain information |
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| >PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria | Back alignment and domain information |
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Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
ID ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Probability ![]() |
| Query | 139 | |||
| 2x43_S | 67 | Sherp; membrane protein; NMR {Leishmania major} | 97.77 | |
| 2x43_S | 67 | Sherp; membrane protein; NMR {Leishmania major} | 97.21 | |
| 2a01_A | 243 | Apolipoprotein A-I; four-helix bundle, lipid trans | 84.32 | |
| 1ryk_A | 69 | Protein YJBJ; alpha protein, structural genomics, | 84.0 |
| >2x43_S Sherp; membrane protein; NMR {Leishmania major} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.9e-05 Score=52.43 Aligned_cols=53 Identities=28% Similarity=0.403 Sum_probs=41.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045955 11 GEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAG 63 (139)
Q Consensus 11 ge~k~~aqeKa~e~~~~a~ekA~~Akdka~e~a~~akdka~e~a~~akeka~e 63 (139)
.|+++++.+++.|+.+++-+++++.||-+..++-.++|++.++++..|+|.++
T Consensus 3 qE~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisg 55 (67)
T 2x43_S 3 QETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSG 55 (67)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhcc
Confidence 47788888888888888888888888877777777787777777777777653
|
| >2x43_S Sherp; membrane protein; NMR {Leishmania major} | Back alignment and structure |
|---|
| >2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0* | Back alignment and structure |
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| >1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00