Citrus Sinensis ID: 045955


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------14
MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKHTFGFGGAGEEEERYGDRDRNTYTKG
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHcccccccccccc
cccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccc
mashdqsyragevkgqteertnQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGtaeagkqktqetgQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKhtfgfggageeeerygdrdrntytkg
mashdqsyragevkgqteertnqtmenvRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRaagtaeagkqktqetgqatgekaeaakektggilkQTEEKVKDAAQSAADAVKhtfgfggageeeerygdrdrntytkg
MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQetgqatgekaeaakektggILKQTEEKVKDAAQSAADAVKHTfgfggageeeeRYGDRDRNTYTKG
*******************************************************************************************************************************************
*******************************************************************************************************************************************
**********************QTME***************************************************************TGGILKQTEE**********DAVKHTFGFGGAGEEEERYGDRDRNTYTKG
*******************R*NQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKHTFG**********************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MASHDQSYRAGEVKGQTxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxAAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKHTFGFGGAGEEEERYGDRDRNTYTKG
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query139 2.2.26 [Sep-21-2011]
P13939136 Late embryogenesis abunda N/A no 0.920 0.941 0.523 7e-25
P83442163 Late embryogenesis abunda N/A no 0.899 0.766 0.466 1e-22
O49817155 Late embryogenesis abunda N/A no 0.920 0.825 0.44 6e-22
O49816177 Late embryogenesis abunda N/A no 0.920 0.723 0.406 1e-20
P0C5A4200 Late embryogenesis abunda yes no 0.848 0.59 0.415 3e-16
A2Y720200 Late embryogenesis abunda N/A no 0.848 0.59 0.421 3e-16
P13934280 Late embryogenesis abunda N/A no 0.992 0.492 0.327 6e-15
P14928213 ABA-inducible protein PHV N/A no 0.863 0.563 0.361 1e-08
Q03968224 Late embryogenesis abunda N/A no 0.755 0.468 0.412 3e-08
Q42376221 Late embryogenesis abunda N/A no 0.863 0.542 0.333 4e-08
>sp|P13939|LEAD7_GOSHI Late embryogenesis abundant protein D-7 OS=Gossypium hirsutum PE=2 SV=1 Back     alignment and function desciption
 Score =  112 bits (280), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 67/128 (52%), Positives = 88/128 (68%)

Query: 1   MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQR 60
           MASH+QSY+AG  +G+  E+  Q  E++++KA+AAK +T E A+ AK KT ETA+ AKQ+
Sbjct: 1   MASHEQSYKAGRAEGRAHEKGEQMKESMKEKAEAAKQKTMETAEAAKQKTMETAEAAKQK 60

Query: 61  AAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTEEKVKDAAQSAADAVKHTFGFGG 120
             G AE    KT++T  A   KAE  KE +GGIL+Q  EKV++AAQ A DAVKHTFG   
Sbjct: 61  TRGAAETTNDKTKQTAGAARGKAEETKETSGGILQQAGEKVRNAAQGATDAVKHTFGMAD 120

Query: 121 AGEEEERY 128
           A E+E  Y
Sbjct: 121 ADEDEHNY 128




LEA proteins are late embryonic proteins abundant in higher plant seed embryos. There are two subsets of LEA proteins (5a and 5b), the first ones are expressed when the cotyledon weight reach 80 mg and the second set are expressed above 100 mg. The function of those proteins is not known.
Gossypium hirsutum (taxid: 3635)
>sp|P83442|LEAD3_DAUCA Late embryogenesis abundant protein Dc3 OS=Daucus carota PE=2 SV=1 Back     alignment and function description
>sp|O49817|LEA2_CICAR Late embryogenesis abundant protein 2 OS=Cicer arietinum PE=2 SV=1 Back     alignment and function description
>sp|O49816|LEA1_CICAR Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1 Back     alignment and function description
>sp|P0C5A4|LEA3_ORYSJ Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. japonica GN=LEA3 PE=2 SV=1 Back     alignment and function description
>sp|A2Y720|LEA3_ORYSI Late embryogenesis abundant protein, group 3 OS=Oryza sativa subsp. indica GN=LEA3 PE=1 SV=1 Back     alignment and function description
>sp|P13934|LEA76_BRANA Late embryogenesis abundant protein 76 OS=Brassica napus PE=2 SV=2 Back     alignment and function description
>sp|P14928|LEA1_HORVU ABA-inducible protein PHV A1 OS=Hordeum vulgare GN=HVA1 PE=2 SV=1 Back     alignment and function description
>sp|Q03968|LEA3_WHEAT Late embryogenesis abundant protein, group 3 OS=Triticum aestivum PE=2 SV=1 Back     alignment and function description
>sp|Q42376|LEA3_MAIZE Late embryogenesis abundant protein, group 3 OS=Zea mays GN=MGL3 PE=2 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query139
312599819154 late embryogenesis abundant protein grou 0.942 0.850 0.512 1e-27
67973216163 late embryogenesis abundant protein [Cat 0.848 0.723 0.528 3e-25
351727184140 seed maturation protein PM30 [Glycine ma 0.856 0.85 0.546 1e-24
126080136 RecName: Full=Late embryogenesis abundan 0.920 0.941 0.523 5e-23
324103765156 LEA5 [Vitis amurensis] 0.863 0.769 0.496 2e-22
147799439 380 hypothetical protein VITISV_025029 [Viti 0.863 0.315 0.476 1e-21
225442847156 PREDICTED: late embryogenesis abundant p 0.863 0.769 0.483 4e-21
22653807163 RecName: Full=Late embryogenesis abundan 0.899 0.766 0.466 9e-21
353703788171 late embryogenesis abundant protein [Sol 0.949 0.771 0.426 9e-21
224054136140 predicted protein [Populus trichocarpa] 0.870 0.864 0.454 1e-20
>gi|312599819|gb|ADQ91835.1| late embryogenesis abundant protein group 3 protein [Arachis hypogaea] Back     alignment and taxonomy information
 Score =  127 bits (320), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 79/154 (51%), Positives = 96/154 (62%), Gaps = 23/154 (14%)

Query: 1   MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQA----------------------AKDR 38
           MASHDQS+RAGE KGQT+E+TNQ M NV DKAQA                      AKD+
Sbjct: 1   MASHDQSFRAGEAKGQTQEKTNQMMSNVGDKAQAVKDKTAQEAHSAWDKTAQTAQAAKDK 60

Query: 39  TYEAAQQAKDKTSETAQQAKQRAAGTAEAGKQKTQETGQATGEKAEAAKEKTGGILKQTE 98
           T +AAQ A+D++SETAQ  + +A  TA A + K  E GQAT E A++ K+  GG L+QT 
Sbjct: 61  TQQAAQTARDRSSETAQNTRAKAQNTAGATRDKASEMGQATRESAQSGKDNAGGFLQQTG 120

Query: 99  EKVKDAAQSAADAVKHTFGFGGAGEEEERYGDRD 132
           EKVK  AQ AADAVKHTFG     E+E  +  RD
Sbjct: 121 EKVKGMAQGAADAVKHTFGM-APHEDEHEHPRRD 153




Source: Arachis hypogaea

Species: Arachis hypogaea

Genus: Arachis

Family: Fabaceae

Order: Fabales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|67973216|gb|AAY84145.1| late embryogenesis abundant protein [Catharanthus roseus] Back     alignment and taxonomy information
>gi|351727184|ref|NP_001237152.1| seed maturation protein PM30 [Glycine max] gi|4838147|gb|AAD30864.1|AF117884_1 seed maturation protein PM30 [Glycine max] gi|255627639|gb|ACU14164.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|126080|sp|P13939.1|LEAD7_GOSHI RecName: Full=Late embryogenesis abundant protein D-7; Short=LEA D-7 gi|18497|emb|CAA33194.1| D 29 protein [Gossypium hirsutum] gi|18505|emb|CAA31589.1| D-7 Lea protein [Gossypium hirsutum] gi|226551|prf||1601521A Lea D-7 gene Back     alignment and taxonomy information
>gi|324103765|gb|ADY17817.1| LEA5 [Vitis amurensis] Back     alignment and taxonomy information
>gi|147799439|emb|CAN61339.1| hypothetical protein VITISV_025029 [Vitis vinifera] Back     alignment and taxonomy information
>gi|225442847|ref|XP_002285360.1| PREDICTED: late embryogenesis abundant protein Dc3 isoform 1 [Vitis vinifera] gi|297743398|emb|CBI36265.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|22653807|sp|P83442.1|LEAD3_DAUCA RecName: Full=Late embryogenesis abundant protein Dc3 Back     alignment and taxonomy information
>gi|353703788|ref|NP_001238798.1| late embryogenesis abundant protein [Solanum lycopersicum] gi|302777019|gb|ADL70200.1| late embryogenesis abundant protein [Solanum lycopersicum] Back     alignment and taxonomy information
>gi|224054136|ref|XP_002298109.1| predicted protein [Populus trichocarpa] gi|222845367|gb|EEE82914.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query139
TAIR|locus:2093307225 AT3G15670 "AT3G15670" [Arabido 0.827 0.511 0.357 7.7e-16
TAIR|locus:2035109169 LEA7 "AT1G52690" [Arabidopsis 0.748 0.615 0.370 1.1e-14
TAIR|locus:2140842109 UNE15 "AT4G13560" [Arabidopsis 0.712 0.908 0.290 5.9e-09
TAIR|locus:2158735331 AT5G44310 "AT5G44310" [Arabido 0.769 0.323 0.280 7.1e-07
TAIR|locus:216401267 AT5G53820 "AT5G53820" [Arabido 0.424 0.880 0.414 1e-06
TAIR|locus:216663067 AT5G38760 "AT5G38760" [Arabido 0.446 0.925 0.369 1.6e-06
TAIR|locus:2085171 479 AT3G53040 "AT3G53040" [Arabido 0.697 0.202 0.28 2.2e-06
TAIR|locus:207684468 AT3G02480 "AT3G02480" [Arabido 0.395 0.808 0.424 1.5e-05
WB|WBGene00002263 1397 lea-1 [Caenorhabditis elegans 0.755 0.075 0.238 0.00016
TAIR|locus:2133144266 AT4G21020 [Arabidopsis thalian 0.755 0.394 0.281 2.6e-05
TAIR|locus:2093307 AT3G15670 "AT3G15670" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 198 (74.8 bits), Expect = 7.7e-16, P = 7.7e-16
 Identities = 45/126 (35%), Positives = 66/126 (52%)

Query:     1 MASHDQSYRAGEVKGQTEERTNQTMENVRDKAQAAKDRT-----------YEAAQQAKDK 49
             MAS+ QSY+AGE +G+ +E+T Q M  +RDKA+  +D+T           +E AQ AKDK
Sbjct:     1 MASNQQSYKAGETRGKAQEKTGQAMGTMRDKAEEGRDKTSQTAQTAQQKAHETAQSAKDK 60

Query:    50 TSETAQQAKQRAAGTAEAGKQKTQXXXXXXXXXXXXXXXXXXXILKQTEEKVKDAAQSAA 109
             TS+TAQ A+Q+A  TA++ K+KT                       Q  +K ++A   A 
Sbjct:    61 TSQTAQAAQQKAHETAQSAKEKTSQTAQTAQQKAHETTQAAKEKTSQAGDKAREAKDKAG 120

Query:   110 DAVKHT 115
               +  T
Sbjct:   121 SYLSET 126


GO:0003674 "molecular_function" evidence=ND
GO:0009793 "embryo development ending in seed dormancy" evidence=ISS
GO:0005634 "nucleus" evidence=IDA
GO:0010162 "seed dormancy process" evidence=RCA
TAIR|locus:2035109 LEA7 "AT1G52690" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2140842 UNE15 "AT4G13560" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2158735 AT5G44310 "AT5G44310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2164012 AT5G53820 "AT5G53820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2166630 AT5G38760 "AT5G38760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2085171 AT3G53040 "AT3G53040" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2076844 AT3G02480 "AT3G02480" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
WB|WBGene00002263 lea-1 [Caenorhabditis elegans (taxid:6239)] Back     alignment and assigned GO terms
TAIR|locus:2133144 AT4G21020 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
P13939LEAD7_GOSHINo assigned EC number0.52340.92080.9411N/Ano

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 139
KOG4744308 consensus Uncharacterized conserved protein [Funct 99.3
KOG4744308 consensus Uncharacterized conserved protein [Funct 99.19
PF0298744 LEA_4: Late embryogenesis abundant protein; InterP 97.81
PF0298744 LEA_4: Late embryogenesis abundant protein; InterP 97.71
PF0595794 DUF883: Bacterial protein of unknown function (DUF 94.31
PF0595794 DUF883: Bacterial protein of unknown function (DUF 92.92
COG323767 Uncharacterized protein conserved in bacteria [Fun 91.32
PF1273274 YtxH: YtxH-like protein; InterPro: IPR024623 This 91.06
PF1273274 YtxH: YtxH-like protein; InterPro: IPR024623 This 88.29
>KOG4744 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
Probab=99.30  E-value=3.7e-11  Score=101.75  Aligned_cols=129  Identities=31%  Similarity=0.412  Sum_probs=82.2

Q ss_pred             hhhhhHhhhhhHHHHHHHHHHHHHHHHHHH-------HHHHHHHHH-------------------HHHHHHHhHHHHHHH
Q 045955            4 HDQSYRAGEVKGQTEERTNQTMENVRDKAQ-------AAKDRTYEA-------------------AQQAKDKTSETAQQA   57 (139)
Q Consensus         4 ~~~s~~Age~k~~aqeKa~e~~~~a~ekA~-------~Akdka~e~-------------------a~~akdka~e~a~~a   57 (139)
                      +.++++||++++.+.+|+|++++.+.++++       +++|++.+.                   +..+++++.+.++.+
T Consensus        85 ~~a~~kA~~a~~~A~eKag~A~d~a~dka~s~kD~a~qakDkA~~~a~~~~d~A~D~~~~~a~DKA~~AkdktkdkA~sa  164 (308)
T KOG4744|consen   85 DKASDKAGEAKDKAYEKAGSAKDTAKDKAGSAKDKASQAKDKAYEAAGLVKDSAYDKTKEKAKDKAGSAKDKAKDKAESA  164 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHhhHHHHHHHHHHHH
Confidence            358999999999999999999998888775       333333222                   444555555566666


Q ss_pred             HHHHHHHHHHHHhHHHHHhHHHHHHHHHHHHh-------hhhhhhhhHHHHHHHHHHHHHHHHhhhhcCCCCCccccccC
Q 045955           58 KQRAAGTAEAGKQKTQETGQATGEKAEAAKEK-------TGGILKQTEEKVKDAAQSAADAVKHTFGFGGAGEEEERYGD  130 (139)
Q Consensus        58 keka~ea~~aakeKas~aa~~akekA~e~kdk-------t~~~~qq~gE~vK~~A~~A~davK~t~g~~~~~~~~~~~~g  130 (139)
                      ++++.++++.+.+++.++.+.++++++..++.       +...+..+.+.+|++++.+.+..++......+...+....+
T Consensus       165 keka~e~a~sA~dkA~dake~Ak~~A~d~~d~a~e~~~~A~dk~~et~e~~Kdka~d~~e~A~d~a~~~k~~a~~~~~~~  244 (308)
T KOG4744|consen  165 KEKAGEAADSARDKAADAKESAKNKAEDTKDSAPEAAGSAKDKAAETAEKAKDKAQDAKEKAKDKAQTVKEKAGEAAEKT  244 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHhh
Confidence            66666666666666666655555555544443       66777777777777777777776655444444333433333


Q ss_pred             CC
Q 045955          131 RD  132 (139)
Q Consensus       131 ~d  132 (139)
                      +|
T Consensus       245 ~d  246 (308)
T KOG4744|consen  245 KE  246 (308)
T ss_pred             hh
Confidence            33



>KOG4744 consensus Uncharacterized conserved protein [Function unknown] Back     alignment and domain information
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress Back     alignment and domain information
>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD Back     alignment and domain information
>COG3237 Uncharacterized protein conserved in bacteria [Function unknown] Back     alignment and domain information
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria Back     alignment and domain information
>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query139
2x43_S67 Sherp; membrane protein; NMR {Leishmania major} 97.77
2x43_S67 Sherp; membrane protein; NMR {Leishmania major} 97.21
2a01_A243 Apolipoprotein A-I; four-helix bundle, lipid trans 84.32
1ryk_A69 Protein YJBJ; alpha protein, structural genomics, 84.0
>2x43_S Sherp; membrane protein; NMR {Leishmania major} Back     alignment and structure
Probab=97.77  E-value=1.9e-05  Score=52.43  Aligned_cols=53  Identities=28%  Similarity=0.403  Sum_probs=41.4

Q ss_pred             hhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Q 045955           11 GEVKGQTEERTNQTMENVRDKAQAAKDRTYEAAQQAKDKTSETAQQAKQRAAG   63 (139)
Q Consensus        11 ge~k~~aqeKa~e~~~~a~ekA~~Akdka~e~a~~akdka~e~a~~akeka~e   63 (139)
                      .|+++++.+++.|+.+++-+++++.||-+..++-.++|++.++++..|+|.++
T Consensus         3 qE~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisg   55 (67)
T 2x43_S            3 QETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSG   55 (67)
T ss_dssp             THHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhcc
Confidence            47788888888888888888888888877777777787777777777777653



>2x43_S Sherp; membrane protein; NMR {Leishmania major} Back     alignment and structure
>2a01_A Apolipoprotein A-I; four-helix bundle, lipid transport; HET: AC9; 2.40A {Homo sapiens} PDB: 3k2s_A* 1av1_A 3j00_0* Back     alignment and structure
>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00