Citrus Sinensis ID: 045959

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300---
Protein Sequence
MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccccccccccccccccccccHHHHHHccccccccccccccEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHcccccccccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccEEEEEEccccccccc
Coil and Loop (DISEMBL)
masgdlergknisnnnnnrgsyssgsyyvepgsdqqwtswlIPMFVVANVAVFIVAMYInncpknnweggrgCVARFLGrlsfeplkenplfgpssstlqklGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVgilphvdnfahiGGFMAGFLLGFVLLLrpqfgwaerhqlpaqarvksrhnpyQYVLCIVALVLLIVGFTVGLVMLFrgengndhcswchylscvptskwkcgn
Flexible Loop (DISEMBL)
masgdlergknisnnnnnrgsySSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHylscvptskwkcgn
Low Complexity Region (SEG)
MASGDLERGKNIsnnnnnrgsyssgsyyVEPGSDQQWTSWLIPMfvvanvavfivaMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYllflfnavsllvllaaalltlvviiainlavgilPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYvlcivalvllivGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN
Disordered region (IsUnstruct)
*********************************DQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFG***STLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWK***
Disordered Region (DISOPRED)
************************************WTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN
Disordered Region (DISEMBL)
MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN
Disordered Region (DISPRO)
********************************SDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCG*
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHiiHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	303	2.2.26 [Sep-21-2011]
C8VCL5	503	Uncharacterized rhomboid	yes	no	0.627	0.377	0.267	9e-15
Q6GMF8	857	Inactive rhomboid protein	no	no	0.561	0.198	0.284	3e-14
Q6PIX5	856	Inactive rhomboid protein	yes	no	0.561	0.198	0.265	7e-11
A7YWH9	856	Inactive rhomboid protein	no	no	0.561	0.198	0.265	1e-10
B0VX73	855	Inactive rhomboid protein	yes	no	0.567	0.201	0.258	1e-10
Q499S9	856	Inactive rhomboid protein	yes	no	0.561	0.198	0.265	2e-10
Q96CC6	855	Inactive rhomboid protein	yes	no	0.561	0.198	0.255	2e-10
A9L8T6	855	Inactive rhomboid protein	N/A	no	0.561	0.198	0.260	2e-10
B1MT31	855	Inactive rhomboid protein	N/A	no	0.567	0.201	0.258	3e-10
Q00M95	827	Inactive rhomboid protein	no	no	0.561	0.205	0.279	8e-10

>sp|C8VCL5|Y0929_EMENI Uncharacterized rhomboid protein AN10929 OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) GN=AN10929 PE=3 SV=1

 Score = 81.3 bits (199), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 113/254 (44%), Gaps = 64/254 (25%)

Query: 108 DRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSG---- 163
           D      Q +R I  ++LH+G +H+  N+L  + +G  +E+  G+ R G VYL SG    
Sbjct: 243 DDKPAPDQWFRFIIPMFLHSGFVHIGFNLLVQMTMGADMERMIGWWRYGLVYLSSGIWGF 302

Query: 164 -FGGAYY-----------LLFLFNAVSLLVLLAA---------ALLTLVVIIAINLAVGI 202
             GG Y             LF   A+ +L LL            L+ +V+ IA++  +G+
Sbjct: 303 VLGGNYAGQGEASCGCSGALFGILALFVLDLLYGWNDRQNPWVELIIMVLGIAVSFVLGL 362

Query: 203 LPHVDNFAHIGGFMAGFLLGFVLLLRPQF-----------------GWAERHQLPAQARV 245
           LP +DNF+H+GGF  G  LG  ++  P                   G A  +  P Q + 
Sbjct: 363 LPGLDNFSHLGGFTMGLALGLCVMRSPNALRERIGLARSPYVAMSGGVAAENADPDQNKT 422

Query: 246 KS--------RHNPYQY------------VLCIVALVLLIVGFTVGLVMLFRGENGNDHC 285
            +        + NP  +            ++ + ALV +++GF + +V  ++  + N  C
Sbjct: 423 STGSNIGGLGKFNPKGFFAGRKPLWWAWWLVRLGALVAVLIGFILLIVNFYKYPSSN--C 480

Query: 286 SWCHYLSCVPTSKW 299
           SWC+  SC+P + W
Sbjct: 481 SWCYRFSCLPVNGW 494

Emericella nidulans (strain FGSC A4 / ATCC 38163 / CBS 112.46 / NRRL 194 / M139) (taxid: 227321)

>sp|Q6GMF8|RHDF1_DANRE Inactive rhomboid protein 1 OS=Danio rerio GN=rhbdf1 PE=2 SV=1

 Score = 79.7 bits (195), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 60/211 (28%), Positives = 96/211 (45%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + I   LE+  G++R+  +Y+LSG  G    A +L
Sbjct: 654 QFYRLWLSLFLHAGILHCLVSVCFQMTILRDLEKLAGWLRISIIYILSGITGNLASAIFL 713

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    L  +  +L     A   L+ ++    A G+LP +DNFA
Sbjct: 714 PYRAEVGPAGSQFGILACLFVELIQSWQILAQPWRAFTKLLCVVLFLFAFGLLPWIDNFA 773

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++GF L F  L    FG               R + Y+    I+  +++ +G   
Sbjct: 774 HISGFISGFFLSFAFLPYISFG---------------RLDMYRKRCQIIIFLVVFLGLFA 818

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
           GLV+LF        C WC  L+C+P +   C
Sbjct: 819 GLVVLFYVHPIK--CEWCELLTCIPFTDKFC 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Danio rerio (taxid: 7955)

>sp|Q6PIX5|RHDF1_MOUSE Inactive rhomboid protein 1 OS=Mus musculus GN=Rhbdf1 PE=1 SV=2

 Score = 68.2 bits (165), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 93/211 (44%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGITGNLASAIFL 712

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++    A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q             + I  +V L +   +
Sbjct: 773 HISGFVSGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIIFQVVFLGLLAGL 819

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
            ++  F        C WC +L+C+P +   C
Sbjct: 820 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Mus musculus (taxid: 10090)

>sp|A7YWH9|RHDF1_BOVIN Inactive rhomboid protein 1 OS=Bos taurus GN=RHBDF1 PE=2 SV=1

 Score = 67.4 bits (163), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAGV+H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 653 QFYRLWLSLFLHAGVLHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++      G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 772

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q             + +  LV L +   +
Sbjct: 773 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIVFQLVFLGLLAGL 819

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
            ++  F        C WC +L+C+P +   C
Sbjct: 820 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Bos taurus (taxid: 9913)

>sp|B0VX73|RHDF1_CALJA Inactive rhomboid protein 1 OS=Callithrix jacchus GN=RHBDF1 PE=3 SV=1

 Score = 67.0 bits (162), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 41/213 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q  V      +Q V   +   L+++ +  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV------FQVVFLGLLAGLVVLFYVY 825

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN 303
            +            C WC +L+C+P +   C  
Sbjct: 826 PV-----------RCEWCEFLTCIPFTDKFCEK 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callithrix jacchus (taxid: 9483)

>sp|Q499S9|RHDF1_RAT Inactive rhomboid protein 1 OS=Rattus norvegicus GN=Rhbdf1 PE=2 SV=1

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 56/211 (26%), Positives = 92/211 (43%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 653 QFYRLWLSLFLHAGILHCLVSVCFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 712

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++    A G+LP +DNFA
Sbjct: 713 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFAFGLLPWIDNFA 772

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q             + I   V L +   +
Sbjct: 773 HISGFVSGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIIFQAVFLGLLAGL 819

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
            ++  F        C WC +L+C+P +   C
Sbjct: 820 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 846

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Rattus norvegicus (taxid: 10116)

>sp|Q96CC6|RHDF1_HUMAN Inactive rhomboid protein 1 OS=Homo sapiens GN=RHBDF1 PE=1 SV=2

 Score = 67.0 bits (162), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 54/211 (25%), Positives = 93/211 (44%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q  +      +Q V   +   L+++ +  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIII------FQVVFLGLLAGLVVLFYVY 825

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
            +            C WC +L+C+P +   C
Sbjct: 826 PV-----------RCEWCEFLTCIPFTDKFC 845

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Homo sapiens (taxid: 9606)

>sp|A9L8T6|RHDF1_PAPAN Inactive rhomboid protein 1 OS=Papio anubis GN=RHBDF1 PE=3 SV=1

 Score = 66.6 bits (161), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/211 (26%), Positives = 92/211 (43%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q             + I  +V L +   +
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQ-------------IIIFQVVFLGLLAGL 818

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
            ++  F        C WC +L+C+P +   C
Sbjct: 819 VVLFYFYPVR----CEWCEFLTCIPFTDKFC 845

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Papio anubis (taxid: 9555)

>sp|B1MT31|RHDF1_CALMO Inactive rhomboid protein 1 OS=Callicebus moloch GN=RHBDF1 PE=3 SV=1

 Score = 66.2 bits (160), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 55/213 (25%), Positives = 93/213 (43%), Gaps = 41/213 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAG++H L ++   + +   LE+  G+ R+  +YLLSG  G    A +L
Sbjct: 652 QFYRLWLSLFLHAGILHCLVSICFQMTVLRDLEKLAGWHRIAIIYLLSGVTGNLASAIFL 711

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  +L     A   L+ ++      G+LP +DNFA
Sbjct: 712 PYRAEVGPAGSQFGILACLFVELFQSWQILARPWRAFFKLLAVVLFLFTFGLLPWIDNFA 771

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G  L F  L    FG  + ++   Q  V      +Q V   +   L+++ +  
Sbjct: 772 HISGFISGLFLSFAFLPYISFGKFDLYRKRCQIIV------FQVVFLGLLAGLVVLFYFY 825

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKCGN 303
            +            C WC +L+C+P +   C  
Sbjct: 826 PV-----------RCEWCEFLTCIPFTDKFCEK 847

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Callicebus moloch (taxid: 9523)

>sp|Q00M95|RHDF2_CANFA Inactive rhomboid protein 2 OS=Canis familiaris GN=RHBDF2 PE=2 SV=1

 Score = 64.7 bits (156), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 91/211 (43%), Gaps = 41/211 (19%)

Query: 115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG----AYYL 170
           Q +RL   ++LHAGV+H L +++  + I   LE+  G+ R+  +++LSG  G    A +L
Sbjct: 624 QFYRLWLSLFLHAGVVHCLVSVVFQMTILRDLEKLAGWHRIAIIFILSGITGNLASAIFL 683

Query: 171 LF--------------------LFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFA 210
            +                    LF +  LL     A L L  I+      G+LP +DN A
Sbjct: 684 PYRAEVGPAGSQFGLLACLFVELFQSWQLLERPWKAFLNLSAIVLFLFICGLLPWIDNIA 743

Query: 211 HIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTV 270
           HI GF++G LL F  L    FG +++               Y+    I+  +L+  G   
Sbjct: 744 HIFGFLSGLLLAFAFLPYITFGTSDK---------------YRKRALILVSLLVFAGLFA 788

Query: 271 GLVMLFRGENGNDHCSWCHYLSCVPTSKWKC 301
            LV+       N    W  YL+C P +   C
Sbjct: 789 SLVIWLYVYPIN--WPWIEYLTCFPFTSRFC 817

Rhomboid protease-like protein which has no protease activity but regulates the secretion of several ligands of the epidermal growth factor receptor. Indirectly activates the epidermal growth factor receptor signaling pathway and may thereby regulate sleep, cell survival, proliferation and migration.

Canis familiaris (taxid: 9615)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
255537321	297	conserved hypothetical protein [Ricinus	0.976	0.996	0.730	1e-124
224074883	321	predicted protein [Populus trichocarpa]	0.973	0.919	0.686	1e-120
224134785	333	predicted protein [Populus trichocarpa]	1.0	0.909	0.645	1e-112
224053955	322	predicted protein [Populus trichocarpa]	0.976	0.919	0.676	1e-112
449452364	327	PREDICTED: inactive rhomboid protein 1-l	0.996	0.923	0.625	1e-110
449494245	322	PREDICTED: inactive rhomboid protein 1-l	0.983	0.925	0.678	1e-109
449460471	322	PREDICTED: inactive rhomboid protein 1-l	0.983	0.925	0.675	1e-108
255539517	325	KOM, putative [Ricinus communis] gi|2235	0.966	0.901	0.628	1e-107
356575933	329	PREDICTED: inactive rhomboid protein 1-l	0.986	0.908	0.608	1e-106
225426828	328	PREDICTED: inactive rhomboid protein 1 i	0.993	0.917	0.681	1e-105

>gi|255537321|ref|XP_002509727.1| conserved hypothetical protein [Ricinus communis] gi|223549626|gb|EEF51114.1| conserved hypothetical protein [Ricinus communis]

 Score =  451 bits (1161), Expect = e-124,   Method: Compositional matrix adjust.
 Identities = 222/304 (73%), Positives = 252/304 (82%), Gaps = 8/304 (2%)

Query: 1   MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYIN 60
           MASGDLERG+       NRG  ++ S+Y    SD+QWTSWLIP FVVAN+AVFI  MY+N
Sbjct: 1   MASGDLERGRV----TKNRGYNNNTSFYYVETSDKQWTSWLIPTFVVANIAVFIAVMYVN 56

Query: 61  NCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLI 120
           NCPKNN      CVA+FLGRLSF+PLKENPLFGPSSSTL+ +GALEW++VVH HQGWRLI
Sbjct: 57  NCPKNNLGFEGNCVAKFLGRLSFQPLKENPLFGPSSSTLENMGALEWNKVVHGHQGWRLI 116

Query: 121 TCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYY-LLFLFNAVSL 179
           TC+WLHAGV+HLLANMLSL+FIGIRLEQQFGFVRVG +YLL+GFGG+    LF+   +S 
Sbjct: 117 TCMWLHAGVVHLLANMLSLIFIGIRLEQQFGFVRVGLIYLLAGFGGSILSALFIQRNIS- 175

Query: 180 LVLLAAALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQL 239
             + A+ALLTLV+IIAINLAVGILPHVDNFAHIGGF+ GF LGFV+LLRPQFGW E   L
Sbjct: 176 --VGASALLTLVIIIAINLAVGILPHVDNFAHIGGFLTGFFLGFVILLRPQFGWYESRHL 233

Query: 240 PAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKW 299
           PA ARVKSRH  YQY   ++A+VLL+ GFTVGLVMLFRG NGNDHCSWCHYLSCVPTSKW
Sbjct: 234 PADARVKSRHKAYQYAFLLIAVVLLVAGFTVGLVMLFRGVNGNDHCSWCHYLSCVPTSKW 293

Query: 300 KCGN 303
           KC N
Sbjct: 294 KCDN 297

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074883|ref|XP_002304474.1| predicted protein [Populus trichocarpa] gi|222841906|gb|EEE79453.1| predicted protein [Populus trichocarpa]

 Score =  436 bits (1122), Expect = e-120,   Method: Compositional matrix adjust.
 Identities = 223/325 (68%), Positives = 253/325 (77%), Gaps = 30/325 (9%)

Query: 1   MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYIN 60
           MASGDLERG     NN N  SY     YVE  +++QWTSW+IPMFVVAN+AVFIV MY+N
Sbjct: 1   MASGDLERGTKNRGNNANFPSY-----YVET-AEKQWTSWIIPMFVVANIAVFIVVMYVN 54

Query: 61  NCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLI 120
           +CPK +      CVA+FLGR SF+PLKENPLFGPS++TL+K+GALEW++VVH HQGWRLI
Sbjct: 55  DCPKKSLGIEGSCVAKFLGRFSFQPLKENPLFGPSAATLEKMGALEWNKVVHGHQGWRLI 114

Query: 121 TCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYY-LLFLFNAVS- 178
           TC+WLHAGV+H+LANMLSL+FIGIRLEQQFGFVRVG +YL+SGFGG+    LF+   +S 
Sbjct: 115 TCMWLHAGVVHVLANMLSLIFIGIRLEQQFGFVRVGIIYLVSGFGGSILSSLFIQQNISV 174

Query: 179 -----LLVLLA-----------------AALLTLVVIIAINLAVGILPHVDNFAHIGGFM 216
                L  LL                  AALLTLVVIIAINLAVGILPHVDNFAHIGGFM
Sbjct: 175 GASGALFGLLGAMLSELLTNWTIYSNKIAALLTLVVIIAINLAVGILPHVDNFAHIGGFM 234

Query: 217 AGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLF 276
           +GFLLGFV LLRPQFGWAE    PA ARVKS+H  YQYVL + A VLLIVGFT+ LVMLF
Sbjct: 235 SGFLLGFVFLLRPQFGWAENRHSPADARVKSKHKAYQYVLMLAAAVLLIVGFTLALVMLF 294

Query: 277 RGENGNDHCSWCHYLSCVPTSKWKC 301
           +GENGNDHCSWCHYLSCVPTSKW C
Sbjct: 295 KGENGNDHCSWCHYLSCVPTSKWNC 319

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224134785|ref|XP_002321905.1| predicted protein [Populus trichocarpa] gi|222868901|gb|EEF06032.1| predicted protein [Populus trichocarpa]

 Score =  411 bits (1057), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 213/330 (64%), Positives = 250/330 (75%), Gaps = 27/330 (8%)

Query: 1   MASGDLERGKNISNNNNNRGSY--SSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMY 58
           M+  D ERG  + +  NN  SY  S+ +Y +E       TSWL+PMFVVANVAVFIV M 
Sbjct: 1   MSREDTERGGGVKSRGNNSNSYLSSTSTYPIEDTEAHYRTSWLVPMFVVANVAVFIVVMC 60

Query: 59  INNCPKNNWEGGRG-CVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW 117
           INNCPK+      G CVARFLGR SFEPLK+NPLFGPSS+TL++LGALEW +VV +HQGW
Sbjct: 61  INNCPKHLHTRLEGKCVARFLGRFSFEPLKDNPLFGPSSATLERLGALEWTKVVDKHQGW 120

Query: 118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYL-LFLFNA 176
           RLITCIWLHAG+IHLLANMLSLVFIGIRLEQQFGFVR+G VYLLSGFGG+    LF+ N 
Sbjct: 121 RLITCIWLHAGIIHLLANMLSLVFIGIRLEQQFGFVRIGVVYLLSGFGGSVLSSLFIRNN 180

Query: 177 VS------LLVLL-----------------AAALLTLVVIIAINLAVGILPHVDNFAHIG 213
           +S      L  LL                 AAALLTL+VII INLA+GILPHVDNFAHIG
Sbjct: 181 ISVGASGALFGLLGAMLSELITNWSIYTNKAAALLTLLVIIVINLAIGILPHVDNFAHIG 240

Query: 214 GFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLV 273
           GF++GFLLGFVLL RPQ+GW ER  +P+   VKS++  +QY L +++++LLIVGFTV LV
Sbjct: 241 GFLSGFLLGFVLLPRPQYGWLERRNVPSGVGVKSKYRAHQYALWLISVILLIVGFTVALV 300

Query: 274 MLFRGENGNDHCSWCHYLSCVPTSKWKCGN 303
           MLF+GENGNDHC WCHYLSCVPTS+WKC +
Sbjct: 301 MLFKGENGNDHCHWCHYLSCVPTSRWKCND 330

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224053955|ref|XP_002298056.1| predicted protein [Populus trichocarpa] gi|222845314|gb|EEE82861.1| predicted protein [Populus trichocarpa]

 Score =  410 bits (1054), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 222/328 (67%), Positives = 251/328 (76%), Gaps = 32/328 (9%)

Query: 1   MASGDLERGKNISNNNNNRGSYSS-GSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYI 59
           M SGDLERG        NRG+ S+  SYYVE  +++QWTSWLIPMFVVAN+ VFIV MY+
Sbjct: 1   MTSGDLERG------TKNRGNSSNFPSYYVET-AEKQWTSWLIPMFVVANIVVFIVVMYV 53

Query: 60  NNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRL 119
           N+CPK N    R CVA+FLGR SF+PLKENPLFGPSS+TL+K+GALEW+++V   QGWRL
Sbjct: 54  NDCPKKNLGSERSCVAKFLGRFSFQPLKENPLFGPSSATLEKMGALEWNKIVRGDQGWRL 113

Query: 120 ITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYY-LLFLFNAVS 178
           ITC+WLHAGVIH+LANMLSLVFIGIRLEQQFGFVRVG +YL+SGFGG+ +  LF+   +S
Sbjct: 114 ITCMWLHAGVIHVLANMLSLVFIGIRLEQQFGFVRVGLIYLVSGFGGSIFSSLFIQRNIS 173

Query: 179 ------LLVLLA-----------------AALLTLVVIIAINLAVGILPHVDNFAHIGGF 215
                 L  LL                  AALLTL+VIIAINLAVGILPHVDNFAHIGGF
Sbjct: 174 VGASGALFGLLGAMLSELLTNWTIYSNKIAALLTLMVIIAINLAVGILPHVDNFAHIGGF 233

Query: 216 MAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVML 275
             GFLLGFVLLLRPQFGW E     A A VKS+H  YQY+  + A VLLIVGFT GLVML
Sbjct: 234 FTGFLLGFVLLLRPQFGWVESQHFRADAHVKSKHKAYQYMFLLAAAVLLIVGFTFGLVML 293

Query: 276 FRGENGNDHCSWCHYLSCVPTSKWKCGN 303
           F+GENGNDHCSWCHYLSCVPTSKWKC N
Sbjct: 294 FKGENGNDHCSWCHYLSCVPTSKWKCEN 321

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449452364|ref|XP_004143929.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus] gi|449495860|ref|XP_004159966.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 205/328 (62%), Positives = 246/328 (75%), Gaps = 26/328 (7%)

Query: 1   MASGDLERGK-NISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYI 59
           M++ DLERG      N N   +YS+  YY+E  S++QWT WL+PMFVVAN+A+FIV MY+
Sbjct: 1   MSNQDLERGAAKNPPNTNPNANYSTSPYYLET-SEKQWTPWLVPMFVVANIAMFIVVMYV 59

Query: 60  NNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRL 119
           NNCP +N   G  CVA FLGR SF+P++ENPL GPSS+TL KLGAL+W++VVHEHQGWRL
Sbjct: 60  NNCPDSNLGFGDKCVASFLGRFSFQPIRENPLLGPSSNTLVKLGALKWNKVVHEHQGWRL 119

Query: 120 ITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYY-LLFLFNAVS 178
           ++CIWLHAG+IHLLANMLSLV IGIRLEQQFGFVR+G +YL++G GG+    LF+ N +S
Sbjct: 120 LSCIWLHAGIIHLLANMLSLVLIGIRLEQQFGFVRIGMIYLVAGVGGSVMSSLFIQNNIS 179

Query: 179 ------LLVLLA-----------------AALLTLVVIIAINLAVGILPHVDNFAHIGGF 215
                 L  LL                  AAL TL+VI+ INLAVGILPHVDNFAHIGGF
Sbjct: 180 VGASGALFGLLGAMLSELLTNWTIYTNKVAALFTLIVIVVINLAVGILPHVDNFAHIGGF 239

Query: 216 MAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVML 275
           + GFLLGFVLL+RPQF W ERH LP  AR   ++  YQY+L + A +LL+ GFT+GLVML
Sbjct: 240 LTGFLLGFVLLVRPQFKWTERHHLPPGARRVPKYKTYQYILWLAAAILLVAGFTLGLVML 299

Query: 276 FRGENGNDHCSWCHYLSCVPTSKWKCGN 303
           FRGENGN HCSWCHYLSCVPTS+W C N
Sbjct: 300 FRGENGNKHCSWCHYLSCVPTSRWDCAN 327

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494245|ref|XP_004159491.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  400 bits (1027), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 222/327 (67%), Positives = 250/327 (76%), Gaps = 29/327 (8%)

Query: 1   MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYIN 60
           M S DLERG   +  NN  G+YS+ SYY E  S++QWTSWL+PMFVVANVA+FIV MY+N
Sbjct: 1   MGSRDLERGG--AKTNNPPGNYSN-SYYQET-SEKQWTSWLVPMFVVANVAMFIVVMYVN 56

Query: 61  NCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLI 120
           NCPK++  G   CVARFLGR SFEPL+ NPLFGPSSSTLQKLGALEW+++VH HQ WRLI
Sbjct: 57  NCPKHSL-GSEECVARFLGRFSFEPLRVNPLFGPSSSTLQKLGALEWEKIVHGHQAWRLI 115

Query: 121 TCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYL-LFLFNAVS- 178
           T IWLHAGVIHLLANMLSLVFIGIRLEQQFGF+RVG +YLLSG GG+    LF+ N +S 
Sbjct: 116 TGIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIRVGILYLLSGLGGSILSSLFIQNNISV 175

Query: 179 -----LLVLLAAALLTLVVIIAI-----------------NLAVGILPHVDNFAHIGGFM 216
                L  LL A L  L+    I                 NLAVGILPHVDNFAHIGGF+
Sbjct: 176 GASGALFGLLGAMLSELLTNWTIYTDKAAALITLIVIIVINLAVGILPHVDNFAHIGGFL 235

Query: 217 AGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLF 276
            GFLLGF+LLLRPQFGW ER  LPA +R   +H  YQY+LC VAL LLIVGFT+GLVMLF
Sbjct: 236 TGFLLGFILLLRPQFGWIERRHLPANSRAVPKHKLYQYILCFVALALLIVGFTIGLVMLF 295

Query: 277 RGENGNDHCSWCHYLSCVPTSKWKCGN 303
           RGENGN+HCSWCHYLSCVPTSKW+CGN
Sbjct: 296 RGENGNNHCSWCHYLSCVPTSKWECGN 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460471|ref|XP_004147969.1| PREDICTED: inactive rhomboid protein 1-like [Cucumis sativus]

 Score =  398 bits (1023), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 221/327 (67%), Positives = 249/327 (76%), Gaps = 29/327 (8%)

Query: 1   MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYIN 60
           M S DLERG   +  N   G+YS+ SYY E  S++QWTSWL+PMFVVANVA+FIV MY+N
Sbjct: 1   MGSRDLERGG--AKTNKPPGNYSN-SYYQET-SEKQWTSWLVPMFVVANVAMFIVVMYVN 56

Query: 61  NCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLI 120
           NCPK++  G   CVARFLGR SFEPL+ NPLFGPSSSTLQKLGALEW+++VH HQ WRLI
Sbjct: 57  NCPKHSL-GSEECVARFLGRFSFEPLRVNPLFGPSSSTLQKLGALEWEKIVHGHQAWRLI 115

Query: 121 TCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYL-LFLFNAVS- 178
           T IWLHAGVIHLLANMLSLVFIGIRLEQQFGF+RVG +YLLSG GG+    LF+ N +S 
Sbjct: 116 TGIWLHAGVIHLLANMLSLVFIGIRLEQQFGFIRVGILYLLSGLGGSILSSLFIQNNISV 175

Query: 179 -----LLVLLAAALLTLVVIIAI-----------------NLAVGILPHVDNFAHIGGFM 216
                L  LL A L  L+    I                 NLAVGILPHVDNFAHIGGF+
Sbjct: 176 GASGALFGLLGAMLSELLTNWTIYTDKAAALITLIVIIVINLAVGILPHVDNFAHIGGFL 235

Query: 217 AGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLF 276
            GFLLGF+LLLRPQFGW ER  LPA +R   +H  YQY+LC VAL LLIVGFT+GLVMLF
Sbjct: 236 TGFLLGFILLLRPQFGWIERRHLPANSRAVPKHKLYQYILCFVALALLIVGFTIGLVMLF 295

Query: 277 RGENGNDHCSWCHYLSCVPTSKWKCGN 303
           RGENGN+HCSWCHYLSCVPTSKW+CGN
Sbjct: 296 RGENGNNHCSWCHYLSCVPTSKWECGN 322

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255539517|ref|XP_002510823.1| KOM, putative [Ricinus communis] gi|223549938|gb|EEF51425.1| KOM, putative [Ricinus communis]

 Score =  394 bits (1011), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 206/328 (62%), Positives = 245/328 (74%), Gaps = 35/328 (10%)

Query: 1   MASGDLERGKNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYIN 60
           MA  D+ERG  +      +G  +S S Y+    + QWTSWL+PMFVVANV+VFI+ MY+N
Sbjct: 1   MAGDDIERGDGV------KGYQTSSSSYLIEYKETQWTSWLVPMFVVANVSVFIIVMYMN 54

Query: 61  NCPKN---NWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW 117
           NCP +    +EG   CVARFLGR SFEPL++NPLFGPSS+TL K+GAL+W++VVH HQGW
Sbjct: 55  NCPDHFHPRFEGK--CVARFLGRFSFEPLRDNPLFGPSSATLTKMGALQWEKVVHGHQGW 112

Query: 118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYYL-LFLFNA 176
           RL+TCIWLHAG+IHLLANML LVFIG+RLEQQFGFVR+G +YL+SGF G+    LF+ N+
Sbjct: 113 RLVTCIWLHAGIIHLLANMLCLVFIGVRLEQQFGFVRIGIIYLVSGFAGSVLSSLFIRNS 172

Query: 177 VS-----------------------LLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIG 213
           +S                       L    AAALLTL+VIIAINLA+GILPHVDNFAHIG
Sbjct: 173 ISVGASGALFGLLGAMLSELITNWTLYTNKAAALLTLLVIIAINLAIGILPHVDNFAHIG 232

Query: 214 GFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLV 273
           GF++GFLLGF+LL RPQFGW E   +PA   VKS++  YQYVL +VAL LLIVG  V LV
Sbjct: 233 GFLSGFLLGFILLARPQFGWLESQNVPASVGVKSKYKGYQYVLWLVALALLIVGLVVALV 292

Query: 274 MLFRGENGNDHCSWCHYLSCVPTSKWKC 301
           MLFRGENGND C WCHYLSCVPTS+WKC
Sbjct: 293 MLFRGENGNDRCHWCHYLSCVPTSRWKC 320

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356575933|ref|XP_003556090.1| PREDICTED: inactive rhomboid protein 1-like isoform 1 [Glycine max]

 Score =  389 bits (1000), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 197/324 (60%), Positives = 234/324 (72%), Gaps = 25/324 (7%)

Query: 5   DLERGKN-ISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAMYINNCP 63
           DLE G     NN     +YS+        S+  WTSWL+PMFVVAN+AVF++ MYINNCP
Sbjct: 4   DLESGGGGTKNNRTAEENYSAPESSHVYDSETHWTSWLVPMFVVANIAVFVITMYINNCP 63

Query: 64  KNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCI 123
           +NN      CVARFLGR SF+P++ENPL GPSSSTL K+GAL WD VV+ HQGWRL TCI
Sbjct: 64  RNNLRFQGRCVARFLGRFSFQPMQENPLLGPSSSTLTKMGALRWDNVVNRHQGWRLFTCI 123

Query: 124 WLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAYY-LLFLFNAVS---- 178
           WLHAGVIHLLANMLSLVFIGIRLEQQFGF+++G +YL+SGFGG+    LF+ + +S    
Sbjct: 124 WLHAGVIHLLANMLSLVFIGIRLEQQFGFIKIGIIYLVSGFGGSVLSSLFIRDHISVGAS 183

Query: 179 --LLVLLAA-----------------ALLTLVVIIAINLAVGILPHVDNFAHIGGFMAGF 219
             L  LL A                 AL+TL+VII INL +GILPHVDNFAHIGGF+ GF
Sbjct: 184 GALFGLLGAMLSELITNWTIYSNKAMALITLLVIIVINLGIGILPHVDNFAHIGGFLVGF 243

Query: 220 LLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGE 279
           LLGF+LL RPQF W E+ +LPA   +KS++  YQYVL IV+L+LLI G +  LVMLFRGE
Sbjct: 244 LLGFILLPRPQFSWLEQRRLPAGVGMKSKYKAYQYVLWIVSLILLIAGLSTALVMLFRGE 303

Query: 280 NGNDHCSWCHYLSCVPTSKWKCGN 303
            G DHC WC YL+CVPTSKW+C N
Sbjct: 304 KGYDHCHWCRYLTCVPTSKWECSN 327

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426828|ref|XP_002283259.1| PREDICTED: inactive rhomboid protein 1 isoform 1 [Vitis vinifera] gi|297742575|emb|CBI34724.3| unnamed protein product [Vitis vinifera]

 Score =  386 bits (991), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 225/330 (68%), Positives = 251/330 (76%), Gaps = 29/330 (8%)

Query: 1   MASGDLERG---KNISNNNNNRGSYSSGSYYVEPGSDQQWTSWLIPMFVVANVAVFIVAM 57
           MA+ DLERG   KN  NN +  G YSS +YY E  S+  WTSWLIPMFVVANVAVF+V M
Sbjct: 1   MANEDLERGGGMKNRGNNGHPPGYYSS-TYYAE-ASETHWTSWLIPMFVVANVAVFVVVM 58

Query: 58  YINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW 117
           Y+N+CPK N      CVA+FL RLSF+PL+ENPLFGPSSSTL+KLG LEW++VV+  QGW
Sbjct: 59  YVNDCPKKNTGIEGACVAKFLRRLSFQPLRENPLFGPSSSTLEKLGGLEWNKVVYGDQGW 118

Query: 118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY--------- 168
           RL+TCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVR+G +YL+SGFGG+          
Sbjct: 119 RLVTCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRIGIIYLVSGFGGSILSSLFIQHN 178

Query: 169 ---------------YLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPHVDNFAHIG 213
                           L  L    S+    AAAL TLVVIIAINLAVGILPHVDNFAHIG
Sbjct: 179 ISVGASGALFGLLGAMLSELITNWSIYTNKAAALFTLVVIIAINLAVGILPHVDNFAHIG 238

Query: 214 GFMAGFLLGFVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLV 273
           GF+ GFLLGF+LLLRPQFGW +R   PA ARVKS+H  YQY   +VA+ LLIVGFTVGLV
Sbjct: 239 GFLTGFLLGFMLLLRPQFGWVKRQHRPADARVKSKHKVYQYAFWLVAMALLIVGFTVGLV 298

Query: 274 MLFRGENGNDHCSWCHYLSCVPTSKWKCGN 303
           MLFRGENGNDHCSWCHYLSCVPTSKWKC N
Sbjct: 299 MLFRGENGNDHCSWCHYLSCVPTSKWKCDN 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	303
TAIR|locus:2182925	346	RBL3 "RHOMBOID-like protein 3"	0.432	0.378	0.688	5.8e-82
TAIR|locus:2015193	317	RBL2 "RHOMBOID-like 2" [Arabid	0.455	0.435	0.652	7.4e-82
TAIR|locus:2066102	389	RBL1 "RHOMBOID-like 1" [Arabid	0.419	0.326	0.610	1.4e-74
TAIR|locus:2195067	307	RBL6 "RHOMBOID-like protein 6"	0.442	0.436	0.552	4.7e-72
TAIR|locus:2084465	394	RBL4 "RHOMBOID-like protein 4"	0.425	0.327	0.526	7.7e-66
TAIR|locus:2127258	313	RBL7 "RHOMBOID-like protein 7"	0.442	0.428	0.572	2.3e-64
TAIR|locus:2035190	309	RBL5 "RHOMBOID-like protein 5"	0.415	0.407	0.522	2e-49
TAIR|locus:2029376	351	KOM "KOMPEITO" [Arabidopsis th	0.422	0.364	0.412	9.6e-44
DICTYBASE|DDB_G0295849	489	DDB_G0295849 "rhomboid family	0.273	0.169	0.416	3.2e-22
UNIPROTKB|G4N225	558	MGG_07535 "Rhomboid family mem	0.191	0.103	0.406	9.8e-12

TAIR|locus:2182925 RBL3 "RHOMBOID-like protein 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 496 (179.7 bits), Expect = 5.8e-82, Sum P(2) = 5.8e-82
 Identities = 93/135 (68%), Positives = 109/135 (80%)

Query:    36 QWTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGR--G-CVARFLGRLSFEPLKENPLF 92
             +WTSWL+PM            M++NNCP N++E  R  G CVA+FLGRLSFEPL+ NPLF
Sbjct:    52 RWTSWLVPMFVVANVAVFVVAMFVNNCP-NHFESHRLRGHCVAKFLGRLSFEPLRTNPLF 110

Query:    93 GPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGF 152
             GPSS TL+KLGALEW +VV + +GWRL+TCIWLHAGVIHL ANMLSLVFIGIRLEQQFGF
Sbjct:   111 GPSSHTLEKLGALEWSKVVEKKEGWRLLTCIWLHAGVIHLGANMLSLVFIGIRLEQQFGF 170

Query:   153 VRVGFVYLLSGFGGA 167
             VR+G +YLLSG GG+
Sbjct:   171 VRIGVIYLLSGIGGS 185

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2015193 RBL2 "RHOMBOID-like 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 517 (187.1 bits), Expect = 7.4e-82, Sum P(2) = 7.4e-82
 Identities = 90/138 (65%), Positives = 108/138 (78%)

Query:    30 EPGSDQQWTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVARFLGRLSFEPLKEN 89
             E   +  WTSWLIP             M++N+CPK      + CVARFLGR SF+PLKEN
Sbjct:    24 ESSGETHWTSWLIPAIVVANLAVFIAVMFVNDCPKKITGPNKECVARFLGRFSFQPLKEN 83

Query:    90 PLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQ 149
             PLFGPSSSTL+K+GALEW +VVHEHQGWRL++C+WLHAG+IHLL NMLSL+FIGIRLEQQ
Sbjct:    84 PLFGPSSSTLEKMGALEWRKVVHEHQGWRLLSCMWLHAGIIHLLTNMLSLIFIGIRLEQQ 143

Query:   150 FGFVRVGFVYLLSGFGGA 167
             FGF+RVG +YL+SG GG+
Sbjct:   144 FGFIRVGLIYLISGLGGS 161

GO:0004252 "serine-type endopeptidase activity" evidence=IEA;IDA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2066102 RBL1 "RHOMBOID-like 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 451 (163.8 bits), Expect = 1.4e-74, Sum P(2) = 1.4e-74
 Identities = 80/131 (61%), Positives = 100/131 (76%)

Query:    37 WTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSS 96
             W  WL+P             M+INNCPKN+      C+ARFLGR +F+P+KENPL GPSS
Sbjct:    54 WFPWLVPAIVVANIALFAISMFINNCPKNS----AYCLARFLGRFAFQPMKENPLLGPSS 109

Query:    97 STLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVG 156
              TL+K+GAL+   VVH+H+ WRL TCIWLHAGV H+LANMLSL+FIGIRLEQ+FGFVR+G
Sbjct:   110 LTLEKMGALDVSMVVHKHEVWRLFTCIWLHAGVFHVLANMLSLIFIGIRLEQEFGFVRIG 169

Query:   157 FVYLLSGFGGA 167
              +Y++SGFGG+
Sbjct:   170 LLYMISGFGGS 180

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005794 "Golgi apparatus" evidence=IDA

TAIR|locus:2195067 RBL6 "RHOMBOID-like protein 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 429 (156.1 bits), Expect = 4.7e-72, Sum P(2) = 4.7e-72
 Identities = 74/134 (55%), Positives = 94/134 (70%)

Query:    34 DQQWTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFG 93
             D QWT+WL P             MY N+CPK        CVA+ L R SF+PL+ENP  G
Sbjct:    15 DTQWTAWLTPTIVVANVSIFIVVMYTNDCPKTTTGANGDCVAKLLRRFSFQPLRENPFLG 74

Query:    94 PSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFV 153
             PSSSTL+KLGAL+W +VV  ++ WRLIT +WLHAG+IHL+ NM  ++  GIRLEQQFGF+
Sbjct:    75 PSSSTLEKLGALDWKKVVQGNEKWRLITAMWLHAGIIHLVMNMFDVIIFGIRLEQQFGFI 134

Query:   154 RVGFVYLLSGFGGA 167
             R+G +YL+SGFGG+
Sbjct:   135 RIGLIYLISGFGGS 148

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005739 "mitochondrion" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2084465 RBL4 "RHOMBOID-like protein 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 393 (143.4 bits), Expect = 7.7e-66, Sum P(2) = 7.7e-66
 Identities = 70/133 (52%), Positives = 93/133 (69%)

Query:    35 QQWTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGP 94
             + W  WLIP             MY+NNCPK + +    C A FLGR SF+  +ENPL GP
Sbjct:    62 RSWFPWLIPCFVVANVAVFVITMYVNNCPKKSGD----CFADFLGRFSFQNTRENPLLGP 117

Query:    95 SSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVR 154
             SS TLQ +G L+  +VV   +GWRL++C WLH GV+HLL NML+L+FIGIR+E++FGF+R
Sbjct:   118 SSLTLQTMGGLDVKKVVKGDEGWRLLSCNWLHGGVVHLLMNMLTLLFIGIRMEREFGFIR 177

Query:   155 VGFVYLLSGFGGA 167
             +G +YL+SGFGG+
Sbjct:   178 IGLLYLISGFGGS 190

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

TAIR|locus:2127258 RBL7 "RHOMBOID-like protein 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 434 (157.8 bits), Expect = 2.3e-64, Sum P(2) = 2.3e-64
 Identities = 79/138 (57%), Positives = 98/138 (71%)

Query:    30 EPGSDQQWTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVARFLGRLSFEPLKEN 89
             E   D QW SW+IP+            MY N+CP  +      C+A+FLGR SFE  K N
Sbjct:    22 ETTPDMQWRSWIIPIVVIANVVVFVVVMYYNDCPHKSHR----CLAKFLGRFSFESFKSN 77

Query:    90 PLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQ 149
             PL GPSSSTL+K+GAL W ++VH+ Q WRL+TC+WLHAGVIHLLANM  + +IG+RLEQQ
Sbjct:    78 PLLGPSSSTLEKMGALAWGKIVHKRQVWRLLTCMWLHAGVIHLLANMCCVAYIGVRLEQQ 137

Query:   150 FGFVRVGFVYLLSGFGGA 167
             FGFVRVG +YL+SGF G+
Sbjct:   138 FGFVRVGTIYLVSGFCGS 155

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2035190 RBL5 "RHOMBOID-like protein 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 369 (135.0 bits), Expect = 2.0e-49, Sum P(2) = 2.0e-49
 Identities = 69/132 (52%), Positives = 94/132 (71%)

Query:    37 WTSWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVA-RFLGRLSFEPLKENPLFGPS 95
             W +WL+P+            MY+N+CP  + E    C+    LGRLSF+P+KEN L GPS
Sbjct:    31 WVAWLVPLILAANFVTFATTMYVNDCPARSDE----CLLFDVLGRLSFQPIKENMLLGPS 86

Query:    96 SSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRV 155
               TL+KLGALE  R+V E + WRLI+CIWLH G +HL+ANM+SL+ IG+RLEQ+FGF+R+
Sbjct:    87 IPTLRKLGALE-RRLVEEGERWRLISCIWLHGGFLHLMANMISLMCIGMRLEQEFGFMRI 145

Query:   156 GFVYLLSGFGGA 167
             G +Y++SG GG+
Sbjct:   146 GALYVISGLGGS 157

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

TAIR|locus:2029376 KOM "KOMPEITO" [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 9.6e-44, Sum P(2) = 9.6e-44
 Identities = 54/131 (41%), Positives = 81/131 (61%)

Query:    39 SWLIPMXXXXXXXXXXXXMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSST 98
             +WL+ +            M +N+C  N+   G  C A+ LGR SF+ L ENP+ GPS+ST
Sbjct:    48 TWLVSVFVLLQIVLFAVTMGVNDCSGNSH--GH-CSAKLLGRFSFQSLSENPMLGPSAST 104

Query:    99 LQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFV 158
             L+ +G L W  +   H+ WR++T  WLH+G+ HL  N+ SL+F+GI +EQQFG +R+  +
Sbjct:   105 LEHMGGLSWKALTENHEIWRILTSPWLHSGLFHLFINLGSLIFVGIYMEQQFGPLRIAVI 164

Query:   159 YLLSGFGGAYY 169
             Y LSG  G+ +
Sbjct:   165 YFLSGIMGSLF 175

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

DICTYBASE|DDB_G0295849 DDB_G0295849 "rhomboid family protein" [Dictyostelium discoideum (taxid:44689)]

 Score = 176 (67.0 bits), Expect = 3.2e-22, Sum P(3) = 3.2e-22
 Identities = 35/84 (41%), Positives = 54/84 (64%)

Query:    83 FEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFI 142
             FEP K NP FGP+S TL  +GA ++  ++   + WR  T I+LH G+ H L NM++ + +
Sbjct:   261 FEPWKTNPWFGPNSYTLLDVGA-KYSPLILNGEWWRFFTPIFLHVGIFHYLMNMVTQLRV 319

Query:   143 GIRLEQQFGFVRVGFVYLLSGFGG 166
             G++LE+ +G  R+  +YLL G  G
Sbjct:   320 GMQLERAYGGHRIVPIYLLCGVAG 343

GO:0016021 "integral to membrane" evidence=IEA

GO:0006508 "proteolysis" evidence=IEA;ISS

GO:0004252 "serine-type endopeptidase activity" evidence=IEA

GO:0008236 "serine-type peptidase activity" evidence=ISS

UNIPROTKB|G4N225 MGG_07535 "Rhomboid family membrane protein" [Magnaporthe oryzae 70-15 (taxid:242507)]

 Score = 106 (42.4 bits), Expect = 9.8e-12, Sum P(4) = 9.8e-12
 Identities = 24/59 (40%), Positives = 37/59 (62%)

Query:   108 DRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSG-FG 165
             D+    +Q +R IT I++HAG+IH+  NML  + +G  +EQ  G +R   VY+ +G FG
Sbjct:   290 DKDNQPNQWFRFITPIFMHAGLIHIGFNMLLQLTLGREMEQAIGSIRFFLVYMSAGIFG 348

GO:0003674 "molecular_function" evidence=ND

GO:0009405 "pathogenesis" evidence=IMP

GO:0030437 "ascospore formation" evidence=IMP

GO:0048315 "conidium formation" evidence=IMP

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	3.4.21	0.691
3rd Layer	3.4.21.105	LOW CONFIDENCE prediction!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	303
pfam01694	146	pfam01694, Rhomboid, Rhomboid family	2e-31
COG0705	228	COG0705, COG0705, Membrane associated serine prote	9e-15
TIGR03902	154	TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CT	2e-05
PTZ00101	278	PTZ00101, PTZ00101, rhomboid-1 protease; Provision	7e-05

>gnl|CDD|216649 pfam01694, Rhomboid, Rhomboid family

 Score =  114 bits (287), Expect = 2e-31
 Identities = 63/146 (43%), Positives = 80/146 (54%), Gaps = 25/146 (17%)

Query: 110 VVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG--- 166
           ++   Q WRLIT ++LHAG +HLL NML+L+F GI LE+  G VR   +YLLSG  G   
Sbjct: 1   LLQRGQLWRLITSMFLHAGWLHLLFNMLALLFFGIPLERILGSVRFLLLYLLSGLAGSLL 60

Query: 167 ----------------------AYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILP 204
                                    L+ L     LL     ALL L+ II +NL +G LP
Sbjct: 61  SYLFSPASSPSVGASGAIFGLLGALLVLLPRNRILLFNFPGALLLLLGIILLNLLLGFLP 120

Query: 205 HVDNFAHIGGFMAGFLLGFVLLLRPQ 230
            + NFAH+GG +AG LLGF+LL RPQ
Sbjct: 121 GISNFAHLGGLIAGLLLGFLLLRRPQ 146

This family contains integral membrane proteins that are related to Drosophila rhomboid protein. Members of this family are found in bacteria and eukaryotes. Rhomboid promotes the cleavage of the membrane-anchored TGF-alpha-like growth factor Spitz, allowing it to activate the Drosophila EGF receptor. Analysis has shown that Rhomboid-1 is an intramembrane serine protease (EC:3.4.21.105). Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. Length = 146

>gnl|CDD|223777 COG0705, COG0705, Membrane associated serine protease [Amino acid transport and metabolism]

 Score = 71.7 bits (176), Expect = 9e-15
 Identities = 51/156 (32%), Positives = 68/156 (43%), Gaps = 32/156 (20%)

Query: 105 LEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGF 164
           L     +   Q WRLIT I+LHAG +HLL NML+L   G  LE++ G +R    YLLSG 
Sbjct: 57  LNLLGALARDQLWRLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGL 116

Query: 165 G---------------------------GAYYLLFLFNAVSLLVL-----LAAALLTLVV 192
                                       GAY+LLF F  + LL L         +L  ++
Sbjct: 117 LAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFLLFPFARILLLFLSLPRPALILILIWLL 176

Query: 193 IIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLR 228
               + A    P V   AH+GG + G LL  +L  +
Sbjct: 177 YSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRK 212

Length = 228

>gnl|CDD|234388 TIGR03902, rhom_GG_sort, rhomboid family GlyGly-CTERM serine protease

 Score = 43.7 bits (104), Expect = 2e-05
 Identities = 33/151 (21%), Positives = 57/151 (37%), Gaps = 32/151 (21%)

Query: 105 LEWDRV-VHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLS- 162
           L +DR  + E + WRL+T  ++H    HLL N+  L+ + +  E+     R+  + LL  
Sbjct: 4   LAYDRAAILEGEWWRLLTGHFVHLNWWHLLMNLAGLLLLWLLFERHLRARRLLLLLLLLS 63

Query: 163 ------------------GFGGAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILP 204
                             G  G  + LF + A+  +     +   L++ +   LA   L 
Sbjct: 64  LLISLGLLLFLPSLQWYVGLSGVLHGLFAWGALRDIRYGRRSGWLLLLGVIAKLAWEQLF 123

Query: 205 HVDNF------------AHIGGFMAGFLLGF 223
                            AH+ G ++G LL  
Sbjct: 124 GASASTAELIGAPVATEAHLAGALSGLLLAL 154

This model describes a rhomboid-like intramembrane serine protease. Its species distribution closely matches model TIGR03501, GlyGly-CTERM, which describes a protein targeting domain analogous to LPXTG and PEP-CTERM. In a number of species (Ralstonia eutropha ,R. metallidurans, R. solanacearum, Marinobacter aquaeolei, etc) with just one GlyGly-CTERM protein (i.e., a dedicated system), the rhombosortase and GlyGly-CTERM genes are adjacent. Length = 154

>gnl|CDD|185445 PTZ00101, PTZ00101, rhomboid-1 protease; Provisional

 Score = 43.3 bits (102), Expect = 7e-05
 Identities = 25/73 (34%), Positives = 39/73 (53%), Gaps = 1/73 (1%)

Query: 94  PSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFV 153
           PS S L  LGA      + + +  RLI  I+LHA + H   N+   + +G  LE+ +G V
Sbjct: 81  PSDSLLVTLGA-NVASRIKQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIV 139

Query: 154 RVGFVYLLSGFGG 166
           ++  +Y L+G  G
Sbjct: 140 KIIILYFLTGIYG 152

Length = 278

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	303
KOG2289	316	consensus Rhomboid family proteins [Signal transdu	100.0
PTZ00101	278	rhomboid-1 protease; Provisional	99.97
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	99.95
PRK10907	276	intramembrane serine protease GlpG; Provisional	99.92
COG0705	228	Membrane associated serine protease [Amino acid tr	99.87
PF01694	145	Rhomboid: Rhomboid family; InterPro: IPR022764 In	99.78
KOG2632	258	consensus Rhomboid family proteins [Function unkno	99.35
PF08551	99	DUF1751: Eukaryotic integral membrane protein (DUF	98.11
PF04511	197	DER1: Der1-like family; InterPro: IPR007599 The en	97.79
KOG2980	310	consensus Integral membrane protease of the rhombo	97.58
KOG0858	239	consensus Predicted membrane protein [Function unk	96.98
KOG2890	326	consensus Predicted membrane protein [Function unk	93.44
KOG4463	323	consensus Uncharacterized conserved protein [Funct	93.37
KOG2290	652	consensus Rhomboid family proteins [Signal transdu	89.95
COG5291	313	Predicted membrane protein [Function unknown]	89.59

>KOG2289 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=100.00  E-value=5.6e-37  Score=285.95  Aligned_cols=261  Identities=52%  Similarity=0.885  Sum_probs=223.7

Q ss_pred             CCCCCCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCC-CCCchhhh-hhcccccccCCCCCCCCCChhHHHhhcccc
Q 045959           29 VEPGSDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWE-GGRGCVAR-FLGRLSFEPLKENPLFGPSSSTLQKLGALE  106 (303)
Q Consensus        29 ~~~~~~~~~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~-~~~~~~~~-~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~  106 (303)
                      +++..++.++++....+...|+..|+..++.++|+...++ .-..|... ++.+|.|++.++|+..+|+..++..+|+..
T Consensus        30 ~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~d~~~~~~~~~f~~~~~~~~l~~f~~~~~~~n~~~~~s~~~~~~~~~~~  109 (316)
T KOG2289|consen   30 RDKLLPRSWTKWLIPRFAVANVPEFIVVMYVNDCPKCCPPPIFMLCLAIVFLGRFSFQGLRENPLLGPSSLTLEKMGGLL  109 (316)
T ss_pred             ccccccchhhHHHHhHHHhhccchhheeeeeecccccCCCchhhhhhhhhhhheeeeeeeccCCccCcCCCCccccCCce
Confidence            4444557788899999999999999888999998764433 12236666 899999999999999999999999999999


Q ss_pred             hhhhhccCceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCCcee------
Q 045959          107 WDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNAVSL------  179 (303)
Q Consensus       107 ~~~i~~~~q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~~~v------  179 (303)
                      ....+.++|+||++|++|+|+|+.||++||+.|.++|..+|+.+|.+|+.++|+++|++|++ ++++.+.+.+|      
T Consensus       110 i~~~~~r~E~WRllTym~LHaGi~HL~~N~~~ql~iGi~LE~~~G~~RiglIYl~gg~aGSlls~l~d~~~~sVGASggv  189 (316)
T KOG2289|consen  110 IYKPVHRGELWRLLTYMWLHAGIFHLLLNMLSQLFIGIPLEQVHGFLRIGLIYLAGGVAGSLLSSLFDPNSISVGASGGV  189 (316)
T ss_pred             ecChhhhchhHHHHHHHHHhcCHHHHHHHHHHHHhccccHHhhcCceEEeeehhhhhhhhHHHHHHhccCCceecccHHH
Confidence            99999999999999999999999999999999999999999999999999999999999999 99998876544      


Q ss_pred             eehhHHHH-----------------HHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHHhhccccchhhhccCchh
Q 045959          180 LVLLAAAL-----------------LTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRPQFGWAERHQLPAQ  242 (303)
Q Consensus       180 ~Gll~~~l-----------------~~l~~~~~~~l~~g~~p~v~~~aHlgG~l~G~l~g~~l~~~~~~~~~~~~~~p~~  242 (303)
                      ||++++.+                 ..+++++.+++.+|+.|++|+++|+||+++|..+++++.++.++++......+  
T Consensus       190 faLlgA~Ls~l~~Nw~~m~~~~~~l~~ll~Ii~i~l~~G~~~~~~~~~h~gg~~~G~~~~fil~~~g~~~~~~~~~~~--  267 (316)
T KOG2289|consen  190 FALLGAHLSNLLTNWTIMKNKFAALRTLLIIIFINLDLGFAPYVDNFAHIGGLLAGFLLGFVLHIGGQLGGITIGLIV--  267 (316)
T ss_pred             HHHHHHHHHHHHhhHHHhcchHHHHHHHHHHHHHHHhhccccceeccccccccCCCcchhHHhhhccceeEEecccee--
Confidence            88886544                 35566778889999999999999999999999999999999999987765444  


Q ss_pred             hhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccceeeeee
Q 045959          243 ARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVP  295 (303)
Q Consensus       243 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~C~~c~y~~C~p  295 (303)
                      .+.+.|++.+|.+.|++..+.++.++.++++.++++    +.|.||+++.|+|
T Consensus       268 ~~~~~~~~~~q~~~w~~~~~~~v~~~~~~~~~if~~----~~~~~~~~~~~~~  316 (316)
T KOG2289|consen  268 LRVFSKRLPYQLLLWIVLLVYLVAGLFASLFNIFDG----KYCLWCHPLSCVP  316 (316)
T ss_pred             eeccccccccchHHHHHHHHHHHHHHHHHHHHhhcC----CccccccccCCCC
Confidence            224455667777888888888888888888887765    7999999999986

>PTZ00101 rhomboid-1 protease; Provisional

Probab=99.97  E-value=5.8e-30  Score=236.73  Aligned_cols=168  Identities=24%  Similarity=0.388  Sum_probs=131.8

Q ss_pred             CCCCcccccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhh
Q 045959           32 GSDQQWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVV  111 (303)
Q Consensus        32 ~~~~~~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~  111 (303)
                      +-++...+.+|..++++|+++|++.....                           .+..++|+.+.+.++|+++++.+ 
T Consensus        46 ~Fp~f~i~~l~~~Iiii~iivfil~l~~~---------------------------~~~~l~p~~~~L~~~Ga~~~~~i-   97 (278)
T PTZ00101         46 IFPHFTWKSFIMAISIIQIIVFIISVSIK---------------------------PADFLTPSDSLLVTLGANVASRI-   97 (278)
T ss_pred             HcCCccHHHHHHHHHHHHHHHHHHHHHhc---------------------------ccccCCCCHHHHHHHhCcchhhh-
Confidence            33445578899999999999999876321                           11235788889999999987665 


Q ss_pred             ccCceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcC------CceeeehhH
Q 045959          112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFN------AVSLLVLLA  184 (303)
Q Consensus       112 ~~~q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~------~~~v~Gll~  184 (303)
                      .++||||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|+..+|++||++|++ ++.+.+.      |+++||+++
T Consensus        98 ~~gq~WRLiT~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~ilYl~sGi~G~l~s~~~~~~~~svGASgAifGLiG  177 (278)
T PTZ00101         98 KQGEIHRLILPIFLHANIFHTFFNVFFQLRMGFTLEKNYGIVKIIILYFLTGIYGNILSSSVTYCPIKVGASTSGMGLLG  177 (278)
T ss_pred             hcCCCHHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccCCcEEehhHHHHHHHH
Confidence            579999999999999999999999999999999999999999999999999999999 7766543      345588887


Q ss_pred             HHHHH-----------------HHHHHHHHHH--Hhc-CchHhHHHHHHHHHHHHHHHHHHhh
Q 045959          185 AALLT-----------------LVVIIAINLA--VGI-LPHVDNFAHIGGFMAGFLLGFVLLL  227 (303)
Q Consensus       185 ~~l~~-----------------l~~~~~~~l~--~g~-~p~v~~~aHlgG~l~G~l~g~~l~~  227 (303)
                      +.+..                 ++.+.++.+.  .+. .|++|+.||+||+++|+++|.++.+
T Consensus       178 a~~~~lil~w~~~~~~~~~~~~~i~~~li~~~l~~~~~g~~Id~~aHlGG~i~G~llg~~~~~  240 (278)
T PTZ00101        178 IVTSELILLWHVIRHRERVVFNIIFFSLISFFYYFTFNGSNIDHVGHLGGLLSGISMGILYNS  240 (278)
T ss_pred             HHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHHHHHHHh
Confidence            65321                 1111222221  222 4789999999999999999988653

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=99.95  E-value=1.3e-28  Score=234.26  Aligned_cols=199  Identities=25%  Similarity=0.463  Sum_probs=148.9

Q ss_pred             CCCCCCCCChhHHHh-hcccchhhhhccCceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHH
Q 045959           87 KENPLFGPSSSTLQK-LGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFG  165 (303)
Q Consensus        87 ~~n~l~gp~~~~L~~-~Ga~~~~~i~~~~q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~  165 (303)
                      ++|..+......+.. .|.+..-.-..+.|+|||+|+.|+|+|++|++..|.+++.+-+.+|+..|+.|+.++|++||+.
T Consensus       421 HEeAtLCSQVhC~d~VCGllPFln~e~PdQfYRL~~SLFlHagviH~~vSi~FQm~vmrdlEkL~g~~riAIiy~~SGit  500 (652)
T KOG2290|consen  421 HEEATLCSQVHCFDGVCGLLPFLNPEVPDQFYRLWLSLFLHAGVIHLLVSICFQMTVMRDLEKLAGWHRIAIIYFLSGIT  500 (652)
T ss_pred             hhhhhhhhhhhhhhcccccccccCCCChhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhhcchhhheeeeccccc
Confidence            445444444444444 3444333344578999999999999999999999999999999999999999999999999999


Q ss_pred             HHH-HHHHhcCCcee------eehhHHHHHH----------------HHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHH
Q 045959          166 GAY-YLLFLFNAVSL------LVLLAAALLT----------------LVVIIAINLAVGILPHVDNFAHIGGFMAGFLLG  222 (303)
Q Consensus       166 g~l-~~~~~~~~~~v------~Gll~~~l~~----------------l~~~~~~~l~~g~~p~v~~~aHlgG~l~G~l~g  222 (303)
                      ||+ +++|.|+...|      +|++.+..+-                =++.+.+.+.+|+.|.|||+||+.|+++|++.+
T Consensus       501 GNLASAIFlpY~~eVgPa~sQ~Gila~l~vEl~qs~~il~~~w~a~~~Lia~~L~L~iGliPWiDN~aHlfG~i~GLl~s  580 (652)
T KOG2290|consen  501 GNLASAIFLPYRAEVGPAGSQFGILACLFVELFQSWQILERPWRAFFHLIATLLVLCIGLIPWIDNWAHLFGTIFGLLTS  580 (652)
T ss_pred             ccchheeeeccccccCCcccccchHHHHHHHHHhhhHhhhhHHHHHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHH
Confidence            999 99998876555      9999665431                122333445569999999999999999999999


Q ss_pred             HHHhhccccchhhhccCchhhhhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCCCccceeeeeeCCCCCCC
Q 045959          223 FVLLLRPQFGWAERHQLPAQARVKSRHNPYQYVLCIVALVLLIVGFTVGLVMLFRGENGNDHCSWCHYLSCVPTSKWKCG  302 (303)
Q Consensus       223 ~~l~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~~~~~~~~~~C~~c~y~~C~p~~~~~c~  302 (303)
                      ++++++-.++..+.            +  +|+.+.+++.+++...+...+|+||.   -.-.||||.|+||+|+++-+|+
T Consensus       581 ~~~~PYi~Fg~~d~------------y--rKr~~ilIs~ivf~~Lla~Lvv~fy~---~~i~cpWce~ltClP~~~~~~e  643 (652)
T KOG2290|consen  581 IIFLPYIDFGDFDL------------Y--RKRFYILISQIVFSGLLAILVVVFYN---YPIDCPWCEHLTCLPFTDCFCE  643 (652)
T ss_pred             HHhhccccccchhh------------h--hhHHHHHHHHHHHHHHHHHHHHheee---cccCCchhhhccccchhhhhhh
Confidence            99998877764322            1  12233344444444444444455553   3468999999999999999997

>PRK10907 intramembrane serine protease GlpG; Provisional

Probab=99.92  E-value=2.6e-24  Score=199.28  Aligned_cols=154  Identities=22%  Similarity=0.254  Sum_probs=112.6

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCcee
Q 045959           38 TSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW  117 (303)
Q Consensus        38 ~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~w  117 (303)
                      ..++|..++++|++||++.....+          +..   ..                      +.. .+......+|||
T Consensus        93 ~~p~T~~li~i~i~vf~l~~~~~~----------~~~---~~----------------------~l~-~~~~~~~~~q~W  136 (276)
T PRK10907         93 AGPLTLGVMIACVVVFILMQILGD----------QTV---ML----------------------WLA-WPFDPSLKFELW  136 (276)
T ss_pred             CCCHHHHHHHHHHHHHHHHHHhcc----------HHH---HH----------------------HHh-ccccccccCCcH
Confidence            346899999999999998764321          000   00                      111 011223478999


Q ss_pred             eeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhc-----CCceeeehhHHHHH---
Q 045959          118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLF-----NAVSLLVLLAAALL---  188 (303)
Q Consensus       118 Rl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~-----~~~~v~Gll~~~l~---  188 (303)
                      |++|++|+|.|+.|+++||++++.+|..+|+.+|++|++.+|++++++|++ ..++.+     .|+.|||+++....   
T Consensus       137 Rl~T~~flH~~~~Hl~fNml~l~~lG~~iE~~~G~~~~l~l~l~s~i~~~~~~~~~~~~~~gGaSGvVygL~g~~~~~~~  216 (276)
T PRK10907        137 RYFTHALLHFSLLHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGWVQSKFSGPWFGGLSGVVYALMGYVWLRGE  216 (276)
T ss_pred             HHHhHHHHhCCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHHhc
Confidence            999999999999999999999999999999999999999999999999999 665543     23445777743221   


Q ss_pred             -----------HHHHHHHHHHHHhc----CchHhHHHHHHHHHHHHHHHHHHhh
Q 045959          189 -----------TLVVIIAINLAVGI----LPHVDNFAHIGGFMAGFLLGFVLLL  227 (303)
Q Consensus       189 -----------~l~~~~~~~l~~g~----~p~v~~~aHlgG~l~G~l~g~~l~~  227 (303)
                                 .++.+.++.++.|+    .++|+|.||+||+++|+++|+...+
T Consensus       217 ~~p~~~~~lp~~~~~f~llwl~~g~~~~~g~~Ian~AHlgGli~Gll~g~~~~~  270 (276)
T PRK10907        217 RDPQSGIYLPRGLIAFALLWLVAGYFDLFGMSIANAAHVAGLAVGLAMAFWDTR  270 (276)
T ss_pred             cccccchhhhHHHHHHHHHHHHHHHHHccCcccHHHHHHHHHHHHHHHHHHhhh
Confidence                       22333344443333    3689999999999999999987653

>COG0705 Membrane associated serine protease [Amino acid transport and metabolism]

Probab=99.87  E-value=1.6e-21  Score=175.77  Aligned_cols=167  Identities=30%  Similarity=0.473  Sum_probs=116.7

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCcee
Q 045959           38 TSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW  117 (303)
Q Consensus        38 ~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~w  117 (303)
                      .+.+|..++++|+++|+.+.+.....       ..........+...|....                   ......|+|
T Consensus        16 ~~~~~~~~~~~~~~v~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~w   69 (228)
T COG0705          16 APPVTLFLILLNILVFLLELVLGWSA-------IFLLTFLFRLFGLYPLNLL-------------------GALARDQLW   69 (228)
T ss_pred             cchHHHHHHHHHHHHHHHHHHccchH-------HHHHHHhhhHHhhcchhhh-------------------ccccccchH
Confidence            37899999999999999887543210       0000000111222222110                   000111999


Q ss_pred             eeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCC--------ceeeehhHHHH-
Q 045959          118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNA--------VSLLVLLAAAL-  187 (303)
Q Consensus       118 Rl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~--------~~v~Gll~~~l-  187 (303)
                      |++|++|+|+|+.|+++||+.++.+|..+|+.+|+.||+.+|+++|+++++ ...+.+..        +++||++++.. 
T Consensus        70 ~lit~~FlH~~~~Hll~N~~~l~~fg~~le~~~G~~~f~~~yl~~gl~~~~~~~~~~~~~~~~~~GASG~i~gllga~~~  149 (228)
T COG0705          70 RLITAIFLHAGFLHLLFNMLALWVFGSNLERRLGTLRFLLFYLLSGLLAGLAQVLFGPKGGAPSLGASGAIFGLLGAYFL  149 (228)
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHhhHHHHHHhchhHHHHHHHHHHHHHHHHHHHHcccccCcccchhHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 77776443        34477775432 


Q ss_pred             -------------------HHHHHHHHHHHHHhcC---chHhHHHHHHHHHHHHHHHHHHhhccc
Q 045959          188 -------------------LTLVVIIAINLAVGIL---PHVDNFAHIGGFMAGFLLGFVLLLRPQ  230 (303)
Q Consensus       188 -------------------~~l~~~~~~~l~~g~~---p~v~~~aHlgG~l~G~l~g~~l~~~~~  230 (303)
                                         ..+.+++..+++.+..   ++|+++||++|+++|++++..+.++.+
T Consensus       150 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~va~~aHl~G~i~G~l~~~~~~~~~~  214 (228)
T COG0705         150 LFPFARILLLFLSLPRPALILILIWLLYSLFSGAGSFGPSVAWSAHLGGLIGGLLLAALLSRKLR  214 (228)
T ss_pred             HccccchhhhhccCchhHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHhhhhh
Confidence                               1222333444444443   379999999999999999988875443

>PF01694 Rhomboid: Rhomboid family; InterPro: IPR022764 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families

Probab=99.78  E-value=2.5e-19  Score=149.55  Aligned_cols=118  Identities=41%  Similarity=0.730  Sum_probs=88.9

Q ss_pred             ccCceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCC-c------eeeehh
Q 045959          112 HEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNA-V------SLLVLL  183 (303)
Q Consensus       112 ~~~q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~-~------~v~Gll  183 (303)
                      +++|+||++|++|+|.|+.|+++|++.++.+|..+|+.+|++|+..+|+.+++++++ ..++.+.. .      .++|++
T Consensus         2 ~~~~~wrl~T~~f~h~~~~hl~~n~~~l~~~g~~lE~~~G~~~~~~~~l~~~~~~~l~~~~~~~~~~~~~G~Sg~~~~l~   81 (145)
T PF01694_consen    2 QNGQWWRLFTSPFVHANFLHLLFNLLALWFFGSLLERRLGSRRFLALYLLSGLLGSLLSLLFSPPNQPYVGASGAVFGLL   81 (145)
T ss_dssp             GCC-TTHHHHGGG--SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-S-----SSHHHHHHHH
T ss_pred             CCCcchhhhHHHHHccCHHHHHHHHHHHHHhhhhHhhhccchHHHHHHHHHHHhhhhccccccccccccCCCcccchHHH
Confidence            578999999999999999999999999999999999999999999999999999999 66665544 2      235555


Q ss_pred             HHHHHHH-----------------HHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHHHhhcc
Q 045959          184 AAALLTL-----------------VVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFVLLLRP  229 (303)
Q Consensus       184 ~~~l~~l-----------------~~~~~~~l~~g~~p~v~~~aHlgG~l~G~l~g~~l~~~~  229 (303)
                      +......                 ...+.+.+..+..|++++.+|++|+++|++++..+.+|+
T Consensus        82 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~hl~G~~~G~~~~~~~~~~~  144 (145)
T PF01694_consen   82 GAFLFLYPQNKKRLRFIYLALVVPIIVLVIILLLGFIPNISFLGHLGGFLAGLLYGFLILRRP  144 (145)
T ss_dssp             HHHHHHHHCCCCCS---HCCCCCCCCCCCHHHCTSSSSTTTHHHHHHHHHHHHHHHHHHCH--
T ss_pred             HHHHHHHhhccchhhcchHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4432211                 011223344455789999999999999999999988654

Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This group of proteins contain serine peptidases belonging to the MEROPS peptidase family S54 (Rhomboid, clan ST). They are integral membrane proteins related to the Drosophila melanogaster (Fruit fly) rhomboid protein P20350 from SWISSPROT. Members of this family are found in archaea, bacteria and eukaryotes. The D. melanogaster rhomboid protease cleaves type-1 transmembrane domains using a catalytic triad composed of serine, histidine and asparagine contributed by different transmembrane domains. It cleaves the transmembrane proteins Spitz, Gurken and Keren within their transmembrane domains to release a soluble TGFalpha-like growth factor. Cleavage occurs in the Golgi, following translocation of the substrates from the endoplasmic reticulum membrane by Star, another transmembrane protein. The growth factors are then able to activate the epidermal growth factor receptor [, ]. Few substrates of mammalian rhomboid homologues have been determined, but rhomboid-like protein 2 (MEROPS S54.002) has been shown to cleave ephrin B3 []. Parasite-encoded rhomboid enzymes are also important for invasion of host cells by Toxoplasma and the malaria parasite. In Saccharomyces cerevisiae (Baker's yeast) the Pcp1 (MDM37) protein (MEROPS S54.007) is a mitochondrial endopeptidase required for the activation of cytochrome c peroxidase and for the processing of the mitochondrial dynamin-like protein Mgm1 [, ]. Mutations in Pcp1 result in cells have fragmented mitochondria, which have very few short tubulues []. This entry represents the 6 transmembrane helix rhomboid domain.; GO: 0004252 serine-type endopeptidase activity, 0016021 integral to membrane; PDB: 3UBB_A 3B45_A 3B44_A 2NRF_A 3TXT_A 2O7L_A 2XTU_A 2IRV_A 2XOW_A 2XTV_A ....

>KOG2632 consensus Rhomboid family proteins [Function unknown]

Probab=99.35  E-value=9.1e-12  Score=113.05  Aligned_cols=117  Identities=26%  Similarity=0.408  Sum_probs=83.3

Q ss_pred             hhhhccCceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhc-hHHHHHHHHHHHHHHHH-HHHHhc-----CCc---
Q 045959          108 DRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFG-FVRVGFVYLLSGFGGAY-YLLFLF-----NAV---  177 (303)
Q Consensus       108 ~~i~~~~q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G-~~r~~~lyl~sgi~g~l-~~~~~~-----~~~---  177 (303)
                      .....+.|.||++|++++|.+..|+++||+.++.+|...|+.+| +.+++....+.++..++ ..+...     +..   
T Consensus        45 ~~~l~~~ql~RL~Ty~l~H~s~~hllfnmlaL~~~g~~fE~~~G~t~~~l~~~~llalf~gIl~ll~~~~~~~~d~~~~~  124 (258)
T KOG2632|consen   45 SELLINWQLYRLITYALVHLSLPHLLFNMLALWPLGSQFERTHGTTVRILMFTVLLALFSGILYLLAYHVFLLSDLVYVE  124 (258)
T ss_pred             HHHhhhHHHHHHHHHHHHhccHHHHHHHHHHHHhchhHHHhhccceehHHHHHHHHHHHHHHHHHHHHHHHhhcchhhhc
Confidence            34456889999999999999999999999999999999999999 88888888888888777 332221     111   


Q ss_pred             -ee--eehhHHHH---------------------HHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHHH
Q 045959          178 -SL--LVLLAAAL---------------------LTLVVIIAINLAVGILPHVDNFAHIGGFMAGFLLGFV  224 (303)
Q Consensus       178 -~v--~Gll~~~l---------------------~~l~~~~~~~l~~g~~p~v~~~aHlgG~l~G~l~g~~  224 (303)
                       ++  .|+..+.+                     ..+..++.+-...=+.|+.|..+|++|+++|+.+++.
T Consensus       125 ~a~G~s~v~Fam~~~~~~~sp~r~~~~fg~~siP~~l~Pw~lLi~~~~lvp~aSFlghl~GllvG~ay~~~  195 (258)
T KOG2632|consen  125 GAIGFSGVLFAMMAVLEVQSPVRSRSVFGLFSIPIVLAPWALLIATQILVPQASFLGHLCGLLVGYAYAFS  195 (258)
T ss_pred             ccccccHHHHHHHHHHhhcCcccchhhcccccccHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHHH
Confidence             11  22221111                     1122222222222246999999999999999999884

>PF08551 DUF1751: Eukaryotic integral membrane protein (DUF1751); InterPro: IPR013861 This entry is found in eukaryotic integral membrane proteins

Probab=98.11  E-value=4.7e-06  Score=66.07  Aligned_cols=54  Identities=24%  Similarity=0.317  Sum_probs=51.9

Q ss_pred             ceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 045959          115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY  168 (303)
Q Consensus       115 q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l  168 (303)
                      ..|+++|+.|++.++..+++|.+.++..|+.+|+.+|+++++-...+.+..+|+
T Consensus         7 ~pWtl~T~~fve~~i~~~l~~~~~l~~~g~~lE~~WGs~E~lkFi~vv~~~tnl   60 (99)
T PF08551_consen    7 YPWTLFTAGFVETNIIGLLFSLLTLFYGGRYLEPIWGSREFLKFILVVNVITNL   60 (99)
T ss_pred             ehHHHHHHHHHHhHHHHHHHHHHHHHHhhHHHHHhcChHHHHHHHHHHHHHhHH
Confidence            679999999999999999999999999999999999999999999999988887

Q12239 from SWISSPROT, a Saccharomyces cerevisiae (Baker's yeast) protein, has been shown to localise COP II vesicles [].

>PF04511 DER1: Der1-like family; InterPro: IPR007599 The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae (Baker's yeast) contains a proteolytic system able to selectively degrade misfolded lumenal secretory proteins

Probab=97.79  E-value=0.00038  Score=61.69  Aligned_cols=63  Identities=22%  Similarity=0.333  Sum_probs=47.0

Q ss_pred             chhhhhccCceeeeehhhhccccH-HHHHHHHHHHHHHHHHHHHH-hc-h-HHHHHHHHHHHHHHHH
Q 045959          106 EWDRVVHEHQGWRLITCIWLHAGV-IHLLANMLSLVFIGIRLEQQ-FG-F-VRVGFVYLLSGFGGAY  168 (303)
Q Consensus       106 ~~~~i~~~~q~wRl~T~~FlH~~~-~HLl~Nm~~l~~~G~~lE~~-~G-~-~r~~~lyl~sgi~g~l  168 (303)
                      +++.+.++.|+||++|+.|.-++. .+.++|++.++..+..+|+. +. + ..++...+.+++.-.+
T Consensus        32 ~~~~v~~~~q~WRl~Tsff~~g~~~~~~l~~~~~l~~~s~~LE~~~f~~~~ady~~~ll~~~~~i~~   98 (197)
T PF04511_consen   32 DWELVFKKFQIWRLFTSFFYFGPFSLNFLFNLYFLYQYSSSLEEGHFQGRSADYLWFLLFGASLILI   98 (197)
T ss_pred             CcHHHhhhcCceeeEEEEEEEcCCCHHHHHHHHHHHHHhhHhccCCCCCCHHHHHHHHHHHHHHHHH
Confidence            345566789999999999987655 69999999999999999997 22 2 4566555555444333

For examination of the components involved in this degradation process, mutants were isolated. They could be divided into four complementation groups. The mutations led to stabilisation of two different substrates for this process, and the classes were called der for degradation in the ER. DER1 was cloned by complementation of the der1-2 mutation. The DER1 gene codes for a novel, hydrophobic protein that is localized to the ER. Deletion of DER1 abolished degradation of the substrate proteins, suggesting that the function of the Der1 protein may be specifically required for the degradation process associated with the ER []. Interestingly this family seems distantly related to the Rhomboid family of membrane peptidases. This family may also mediate degradation of misfolded proteins.

>KOG2980 consensus Integral membrane protease of the rhomboid family involved in different forms of regulated intramembrane proteolysis [Signal transduction mechanisms]

Probab=97.58  E-value=3e-05  Score=72.16  Aligned_cols=54  Identities=30%  Similarity=0.480  Sum_probs=45.5

Q ss_pred             ceeeeehhhhccccHHHHHHHHHHHHHHHH-HHHHHhchHHHHHHHHHHHHHHHH
Q 045959          115 QGWRLITCIWLHAGVIHLLANMLSLVFIGI-RLEQQFGFVRVGFVYLLSGFGGAY  168 (303)
Q Consensus       115 q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~-~lE~~~G~~r~~~lyl~sgi~g~l  168 (303)
                      --|.++++.|.|.+..|+..||+.+..+.. .+....|...+..+|+.++..|..
T Consensus       154 ~~w~i~~s~Fsh~~a~h~g~~~~~~~~y~~~a~~~~~~~~~~~AlylSa~~~~~~  208 (310)
T KOG2980|consen  154 GCWKIILSTFSHYSALHLGPNMLVLKSYLAGALKGSLGFSSFFALYLSAGVKGLF  208 (310)
T ss_pred             cceeEEeehhcchhHhhhcHHHHHHHHHhcccccCCcchhhcccceeccccccce
Confidence            347799999999999999999999888877 777788899999999966666554

>KOG0858 consensus Predicted membrane protein [Function unknown]

Probab=96.98  E-value=0.0028  Score=57.44  Aligned_cols=96  Identities=18%  Similarity=0.141  Sum_probs=69.2

Q ss_pred             cccccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCc
Q 045959           36 QWTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQ  115 (303)
Q Consensus        36 ~~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q  115 (303)
                      ..+|.+|.....+++++=++....-                 +     .|..               =-.+++.+.++.|
T Consensus        10 ~~iPpVTR~~~~~~v~tt~~~~l~l-----------------I-----sP~~---------------l~~~p~Lv~kk~Q   52 (239)
T KOG0858|consen   10 LQIPPVTRYYTTACVVTTLLVRLDL-----------------I-----SPFQ---------------LYLNPELVFKKFQ   52 (239)
T ss_pred             hcCChHHHHHHHHHHHHHHHHhhcc-----------------c-----Cchh---------------eEecHHHHHhHhH
Confidence            3468899999999988777654210                 0     1111               0124567888999


Q ss_pred             eeeeehhhhcccc-HHHHHHHHHHHHHHHHHHHHHh-c--hHHHHHHHHHHHHHHHH
Q 045959          116 GWRLITCIWLHAG-VIHLLANMLSLVFIGIRLEQQF-G--FVRVGFVYLLSGFGGAY  168 (303)
Q Consensus       116 ~wRl~T~~FlH~~-~~HLl~Nm~~l~~~G~~lE~~~-G--~~r~~~lyl~sgi~g~l  168 (303)
                      +||++|+.+.-+. -+|.++||+.++--.+.+|+-. .  +..|+...+.+++.-.+
T Consensus        53 iWRliTs~lyfg~~gf~fl~n~~FlyrY~~~LE~g~f~~rtadf~~mllf~~~l~~~  109 (239)
T KOG0858|consen   53 IWRLITSFLYFGPFGFDFLMNLYFLYRYSSMLEEGSFRGRTADFLYMLLFGAVLLTL  109 (239)
T ss_pred             HHHhhhhhheeccccHHHHHHHHHHHHHHHHHhcCCCCCchhHHHHHHHHHHHHHHH
Confidence            9999999999876 6899999999999999999732 2  36677776666655444

>KOG2890 consensus Predicted membrane protein [Function unknown]

Probab=93.44  E-value=0.099  Score=49.10  Aligned_cols=54  Identities=22%  Similarity=0.313  Sum_probs=48.2

Q ss_pred             ceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 045959          115 QGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY  168 (303)
Q Consensus       115 q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l  168 (303)
                      ..|+++|+.|+-.+++-.+.|.+.+.+-|..+|+.+|+..++.+|.+.-..-++
T Consensus        66 ~~WtliTs~fie~~vw~V~~sv~~L~v~G~~lEp~Wg~~e~lkff~ivn~~~~l  119 (326)
T KOG2890|consen   66 FPWTLITSGFIELNVWDVLVSVLTLSVGGKFLEPNWGSLELLKFFAIVNGSTTL  119 (326)
T ss_pred             hhHHHHhcchhhhhHHHHHHHHHheeecceeeccCCCCHHHHHHHHHhhchhHH
Confidence            679999999999999999999999999999999999999999888776544443

>KOG4463 consensus Uncharacterized conserved protein [Function unknown]

Probab=93.37  E-value=0.048  Score=50.24  Aligned_cols=57  Identities=18%  Similarity=0.277  Sum_probs=48.8

Q ss_pred             hccCceeeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH
Q 045959          111 VHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY  168 (303)
Q Consensus       111 ~~~~q~wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l  168 (303)
                      ....|+||++...|.-.+-..+.+-++.++.+ +.+||.+|+.||..+.+.+++.+-+
T Consensus        46 ~~y~qywrlL~~qF~~~n~~e~~~~l~I~Y~f-R~~ERlLGShky~~fiv~s~~~~~l  102 (323)
T KOG4463|consen   46 EKYFQYWRLLMSQFAFSNTPELMFGLYILYYF-RVFERLLGSHKYSVFIVFSGTVSLL  102 (323)
T ss_pred             HHHHHHHHHHHHHHHhcCChHHHHHHHHHHHH-HHHHHHhccccceeehhHHHHHHHH
Confidence            34689999999999999988888877666655 6999999999999998888888877

>KOG2290 consensus Rhomboid family proteins [Signal transduction mechanisms]

Probab=89.95  E-value=0.37  Score=47.79  Aligned_cols=84  Identities=25%  Similarity=0.340  Sum_probs=54.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhc-ccccc----cCCCCCCCCCChhHHHhhcccchhhhh
Q 045959           37 WTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLG-RLSFE----PLKENPLFGPSSSTLQKLGALEWDRVV  111 (303)
Q Consensus        37 ~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~-~~~~~----P~~~n~l~gp~~~~L~~~Ga~~~~~i~  111 (303)
                      .+||+|+.+..+++.|=++.....+..-.+- +-.+..+..++ .+.++    -.++|+.+||+.+.|+.+||++.+-+.
T Consensus       198 ~RP~FTyWlt~Vh~~V~iLsl~~YG~aP~gf-~~~et~~~Vl~n~~v~e~VkYlqQeN~WiGP~~~dLI~LGA~fSPCmr  276 (652)
T KOG2290|consen  198 HRPWFTYWLTFVHSFVTILSLCIYGIAPVGF-SQHETVGDVLDNTLVYERVKYLQQENFWIGPSSADLIHLGAKFSPCMR  276 (652)
T ss_pred             CCchhHHHHHHHHHHHHHHHHHHhcCCcccc-hhhHhHHHHHhhhhhhhhhHHHHhcCCccCccHHHHHHhccccChhhh
Confidence            3589999999999888877665443210000 00111122221 11111    135799999999999999999999999


Q ss_pred             ccCceeeeeh
Q 045959          112 HEHQGWRLIT  121 (303)
Q Consensus       112 ~~~q~wRl~T  121 (303)
                      +..|.|.++-
T Consensus       277 rd~q~~~~I~  286 (652)
T KOG2290|consen  277 RDPQVWSAIE  286 (652)
T ss_pred             cChHHHHHHH
Confidence            9999887653

>COG5291 Predicted membrane protein [Function unknown]

Probab=89.59  E-value=1.1  Score=41.17  Aligned_cols=42  Identities=19%  Similarity=0.248  Sum_probs=35.2

Q ss_pred             hhhhhccCceeeeehhhhcccc-HHHHHHHHHHHHHHHHHHHH
Q 045959          107 WDRVVHEHQGWRLITCIWLHAG-VIHLLANMLSLVFIGIRLEQ  148 (303)
Q Consensus       107 ~~~i~~~~q~wRl~T~~FlH~~-~~HLl~Nm~~l~~~G~~lE~  148 (303)
                      .+...++-||||++|+..+-++ -+..++|++.++--.+++|+
T Consensus        51 ~pL~~k~~qiwRlfTs~~~~~~~~~d~~M~vyf~Y~yS~~LE~   93 (313)
T COG5291          51 SPLFLKRLQIWRLFTSFLYFGKPTLDMFMHVYFLYRYSRMLEE   93 (313)
T ss_pred             chhHHHHHHHHHHHHHHHhhcCcchhHHHHHHHHHHHHHHHhc
Confidence            4455678899999998777765 46889999999999999997

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	303
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	9e-28
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	7e-23

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A Length = 196

 Score =  105 bits (264), Expect = 9e-28
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 110 VVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGA-- 167
              + + WR I+   +H   +H+L N+      G  +E+ FG V++  +Y+++       
Sbjct: 44  EEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYV 103

Query: 168 ---------------------YYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGIL-PH 205
                                Y  +       L  L       L+V IA+     +    
Sbjct: 104 QNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVE 163

Query: 206 VDNFAHIGGFMAGFLLGFVLLLRPQ 230
           + N AHI G + G + GF+     +
Sbjct: 164 MGNAAHISGLIVGLIWGFIDSKLRK 188

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A* Length = 181

 Score = 92.4 bits (230), Expect = 7e-23
 Identities = 27/159 (16%), Positives = 51/159 (32%), Gaps = 26/159 (16%)

Query: 91  LFGPSSSTLQKLGALEWDRVVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQF 150
                   +  L          + + WR  T   +H  ++H+L N+L   ++G  +E++ 
Sbjct: 22  QILGDQEVMLWLAWPFD--PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRL 79

Query: 151 GFVRVGFVYLLSGFGG-----------------------AYYLLFLFNAVSLLVLLAAAL 187
           G  ++  + L+S                            Y  L         + L   L
Sbjct: 80  GSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGL 139

Query: 188 LTLVVIIAINLAVGIL-PHVDNFAHIGGFMAGFLLGFVL 225
           +   +I  +     +    + N AHI G   G  + FV 
Sbjct: 140 IIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD 178

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	303
2xov_A	181	Rhomboid protease GLPG; membrane protein, hydrolas	99.93
2nr9_A	196	Protein GLPG homolog; intramembrane peptidase, rho	99.93

>2xov_A Rhomboid protease GLPG; membrane protein, hydrolase, intramembrane protease; HET: BNG; 1.65A {Escherichia coli} PDB: 2ic8_A* 2nrf_A 2xtu_A* 2irv_A* 3b45_A* 2o7l_A* 2xow_A* 3txt_A* 2xtv_A* 3b44_A*

Probab=99.93  E-value=5.6e-25  Score=190.99  Aligned_cols=154  Identities=23%  Similarity=0.324  Sum_probs=115.9

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCcee
Q 045959           38 TSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW  117 (303)
Q Consensus        38 ~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~w  117 (303)
                      .|++|..++++|+++|+++....+             ....+.+++.|                       ....++|||
T Consensus         3 ~~pvt~~li~~~v~vf~~~~~~~~-------------~~~~~~~~~~p-----------------------~~~~~~~~w   46 (181)
T 2xov_A            3 AGPVTWVMMIACVVVFIAMQILGD-------------QEVMLWLAWPF-----------------------DPTLKFEFW   46 (181)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHCH-------------HHHHHHHSSCC-----------------------SGGGTTCTT
T ss_pred             CCcHHHHHHHHHHHHHHHHHHhCc-------------HHHHHhhcCCh-----------------------hhccCCCCH
Confidence            367999999999999998764311             01122333322                       123578999


Q ss_pred             eeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcC-----CceeeehhHHHHH---
Q 045959          118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFN-----AVSLLVLLAAALL---  188 (303)
Q Consensus       118 Rl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~-----~~~v~Gll~~~l~---  188 (303)
                      |++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+.++++|++ +.++.++     |+++||++++.+.   
T Consensus        47 rl~T~~f~H~~~~Hl~~Nm~~l~~~g~~~E~~~G~~~fl~~yl~~~i~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~~  126 (181)
T 2xov_A           47 RYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRGE  126 (181)
T ss_dssp             HHHHGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHhcCCCceeHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999999 7776654     2345777754321   


Q ss_pred             -----------HHHHHHHHHHHHhc----CchHhHHHHHHHHHHHHHHHHHHhh
Q 045959          189 -----------TLVVIIAINLAVGI----LPHVDNFAHIGGFMAGFLLGFVLLL  227 (303)
Q Consensus       189 -----------~l~~~~~~~l~~g~----~p~v~~~aHlgG~l~G~l~g~~l~~  227 (303)
                                 .......+.+.+++    .|++|++||+||+++|++++..+.+
T Consensus       127 ~~p~~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~  180 (181)
T 2xov_A          127 RDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVDSL  180 (181)
T ss_dssp             HCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             hCcCceeeeHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHhc
Confidence                       22223333344443    3589999999999999999987653

>2nr9_A Protein GLPG homolog; intramembrane peptidase, rhomboid protease, membrane protein; HET: PA6 PQE; 2.20A {Haemophilus influenzae} SCOP: f.51.1.1 PDB: 3odj_A

Probab=99.93  E-value=5e-26  Score=200.02  Aligned_cols=158  Identities=18%  Similarity=0.278  Sum_probs=114.7

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCce
Q 045959           37 WTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQG  116 (303)
Q Consensus        37 ~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~  116 (303)
                      +.|++|..++++|+++|+++....+             ....+.+++.|                      .. +.++||
T Consensus         7 ~~~pvt~~li~~~v~vfll~~~~~~-------------~~~~~~~~~~p----------------------~~-~~~~~~   50 (196)
T 2nr9_A            7 QQGKITLILTALCVLIYIAQQLGFE-------------DDIMYLMHYPA----------------------YE-EQDSEV   50 (196)
T ss_dssp             TSCHHHHHHHHHHHHHHHHHHTTCH-------------HHHHHHHSCCC----------------------SG-GGGGCT
T ss_pred             ccccHHHHHHHHHHHHHHHHHHcCc-------------HHHHHhhcCCH----------------------hh-cccCCc
Confidence            3467999999999999998763110             01122233322                      22 357899


Q ss_pred             eeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCC-----ceeeehhHHHHHH-
Q 045959          117 WRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNA-----VSLLVLLAAALLT-  189 (303)
Q Consensus       117 wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~-----~~v~Gll~~~l~~-  189 (303)
                      ||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|++++++|++ +.++.++.     +++||++++.+.. 
T Consensus        51 wrl~T~~flH~~~~Hl~~Nm~~l~~~G~~lE~~~G~~~~l~~yl~~~~~~~l~~~~~~~~~~vGaSGai~gl~g~~~~~~  130 (196)
T 2nr9_A           51 WRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRD  130 (196)
T ss_dssp             THHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHccCHHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHHHHHHHHhcCCCeeeHHHHHHHHHHHHHHHH
Confidence            9999999999999999999999999999999999999999999999999999 77766542     3447777543320 


Q ss_pred             ------------HHH----HHHHHHHHh-cCchHhHHHHHHHHHHHHHHHHHHhhccc
Q 045959          190 ------------LVV----IIAINLAVG-ILPHVDNFAHIGGFMAGFLLGFVLLLRPQ  230 (303)
Q Consensus       190 ------------l~~----~~~~~l~~g-~~p~v~~~aHlgG~l~G~l~g~~l~~~~~  230 (303)
                                  ...    ++.+.+... ..+++|++||+||+++|++++..+.++++
T Consensus       131 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~l~~~~~~~~~~  188 (196)
T 2nr9_A          131 KLNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSKLRK  188 (196)
T ss_dssp             HSSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhcchhhcchHHHHHHHHHHHHHHHHHhccCCCccHHHHHHHHHHHHHHHHHHHhccc
Confidence                        000    111222111 12489999999999999999998876543

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	303
d3b45a1	180	f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId:	9e-12
d2nr9a1	189	f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilu	6e-10

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]} Length = 180

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

 Score = 60.5 bits (146), Expect = 9e-12
 Identities = 26/139 (18%), Positives = 51/139 (36%), Gaps = 24/139 (17%)

Query: 110 VVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFG---- 165
              + + WR  T   +H  ++H+L N+L   ++G  +E++ G  ++  + L+S       
Sbjct: 39  PTLKFEFWRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYV 98

Query: 166 --------------------GAYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGILPH 205
                               G  +L    +  S + L    ++  ++ I           
Sbjct: 99  QQKFSGPWFGGLSGVVYALMGYVWLRGERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMS 158

Query: 206 VDNFAHIGGFMAGFLLGFV 224
           + N AHI G   G  + FV
Sbjct: 159 MANGAHIAGLAVGLAMAFV 177

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]} Length = 189

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

 Score = 55.6 bits (133), Expect = 6e-10
 Identities = 28/145 (19%), Positives = 52/145 (35%), Gaps = 24/145 (16%)

Query: 110 VVHEHQGWRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGG--- 166
              + + WR I+   +H   +H+L N+      G  +E+ FG V++  +Y+++       
Sbjct: 41  EEQDSEVWRYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYV 100

Query: 167 --------------------AYYLLFLFNAVSLLVLLAAALLTLVVIIAINLAVGIL-PH 205
                                Y  +       L  L       L+V IA+     +    
Sbjct: 101 QNYVSGPAFFGLSGVVYAVLGYVFIRDKLNHHLFDLPEGFFTMLLVGIALGFISPLFGVE 160

Query: 206 VDNFAHIGGFMAGFLLGFVLLLRPQ 230
           + N AHI G + G + GF+     +
Sbjct: 161 MGNAAHISGLIVGLIWGFIDSKLRK 185

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	303
d3b45a1	180	GlpG {Escherichia coli [TaxId: 562]}	99.91
d2nr9a1	189	GlpG homolog HI0618 {Haemophilus influenzae [TaxId	99.9

>d3b45a1 f.51.1.1 (A:91-270) GlpG {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG
species: Escherichia coli [TaxId: 562]

Probab=99.91  E-value=5.9e-24  Score=181.63  Aligned_cols=153  Identities=22%  Similarity=0.257  Sum_probs=110.8

Q ss_pred             ccccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCce
Q 045959           37 WTSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQG  116 (303)
Q Consensus        37 ~~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~  116 (303)
                      |.+++|+.++++|++||+......+                                   +...++.+. +.....++||
T Consensus         2 r~~pvT~~li~i~~~vf~~~~~~~~-----------------------------------~~~~~~~~~-~~~~~~~g~~   45 (180)
T d3b45a1           2 RAGPVTWVMMIACVVVFIAMQILGD-----------------------------------QEVMLWLAW-PFDPTLKFEF   45 (180)
T ss_dssp             CCCHHHHHHHHHHHHHHHHHHHHCH-----------------------------------HHHHHHHSS-CCSGGGTTCG
T ss_pred             CCCcHHHHHHHHHHHHHHHHHHhCc-----------------------------------HHHHHHHcC-CCcccccCch
Confidence            4578899999999999997654321                                   011111111 1233458899


Q ss_pred             eeeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCC-----ceeeehhHHHHH--
Q 045959          117 WRLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNA-----VSLLVLLAAALL--  188 (303)
Q Consensus       117 wRl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~-----~~v~Gll~~~l~--  188 (303)
                      ||++|++|+|.|+.|+++||+.++.+|..+|+.+|++|++.+|+++++.|++ +.++.++.     +.++|+++....  
T Consensus        46 wrl~T~~f~H~~~~Hl~~N~~~l~~~G~~lE~~~G~~~~~~~~~~~~~~g~l~~~~~~~~~~~G~sg~i~~l~~~~~~~~  125 (180)
T d3b45a1          46 WRYFTHALMHFSLMHILFNLLWWWYLGGAVEKRLGSGKLIVITLISALLSGYVQQKFSGPWFGGLSGVVYALMGYVWLRG  125 (180)
T ss_dssp             GGGTGGGGCCCSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHhccchhheeeeeHHHHHHHHHHHHHhccccccccchHHHHHHHHHHHh
Confidence            9999999999999999999999999999999999999999999999999999 76666543     223555432211  


Q ss_pred             ------------HHHHHHHHHHH---H-hcCchHhHHHHHHHHHHHHHHHHHH
Q 045959          189 ------------TLVVIIAINLA---V-GILPHVDNFAHIGGFMAGFLLGFVL  225 (303)
Q Consensus       189 ------------~l~~~~~~~l~---~-g~~p~v~~~aHlgG~l~G~l~g~~l  225 (303)
                                  .......+.+.   . ...+++|+.||++|+++|++++++.
T Consensus       126 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHlgG~l~G~~~~~~~  178 (180)
T d3b45a1         126 ERDPQSGIYLQRGLIIFALIWIVAGWFDLFGMSMANGAHIAGLAVGLAMAFVD  178 (180)
T ss_dssp             HHCGGGSCCCCHHHHHHHHHHHHHHHTTSSCCSSCHHHHHHHHHHHHHHHHHH
T ss_pred             hhcchhHHhhHHHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHHHHH
Confidence                        11111111111   2 2357899999999999999999874

>d2nr9a1 f.51.1.1 (A:4-192) GlpG homolog HI0618 {Haemophilus influenzae [TaxId: 727]}

class: Membrane and cell surface proteins and peptides
fold: Rhomboid-like
superfamily: Rhomboid-like
family: Rhomboid-like
domain: GlpG homolog HI0618
species: Haemophilus influenzae [TaxId: 727]

Probab=99.90  E-value=4.1e-24  Score=184.35  Aligned_cols=154  Identities=20%  Similarity=0.276  Sum_probs=112.1

Q ss_pred             cccHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCCchhhhhhcccccccCCCCCCCCCChhHHHhhcccchhhhhccCcee
Q 045959           38 TSWLIPMFVVANVAVFIVAMYINNCPKNNWEGGRGCVARFLGRLSFEPLKENPLFGPSSSTLQKLGALEWDRVVHEHQGW  117 (303)
Q Consensus        38 ~p~vt~~li~inv~VFl~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~P~~~n~l~gp~~~~L~~~Ga~~~~~i~~~~q~w  117 (303)
                      .+++|..++++|+++|+++....+                                   +.+.... ..+...+.++|||
T Consensus         5 ~~pvt~~i~~~~~~v~~~~~~~~~-----------------------------------~~~~~~~-~~~~~~~~~~~~w   48 (189)
T d2nr9a1           5 QGKITLILTALCVLIYIAQQLGFE-----------------------------------DDIMYLM-HYPAYEEQDSEVW   48 (189)
T ss_dssp             SCHHHHHHHHHHHHHHHHHHTTCH-----------------------------------HHHHHHH-SCCCSGGGGGCTT
T ss_pred             cchHHHHHHHHHHHHHHHHHHhcc-----------------------------------HHHHHHH-HccccccccCchH
Confidence            357999999999999998763110                                   0111111 1123345688999


Q ss_pred             eeehhhhccccHHHHHHHHHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHH-HHHHhcCC-----ceeeehhHHHHH---
Q 045959          118 RLITCIWLHAGVIHLLANMLSLVFIGIRLEQQFGFVRVGFVYLLSGFGGAY-YLLFLFNA-----VSLLVLLAAALL---  188 (303)
Q Consensus       118 Rl~T~~FlH~~~~HLl~Nm~~l~~~G~~lE~~~G~~r~~~lyl~sgi~g~l-~~~~~~~~-----~~v~Gll~~~l~---  188 (303)
                      |++|++|+|.|+.|+++||+.++.+|..+|+.+|+++++.+|+++++.|++ ..++.+..     ++++|+++....   
T Consensus        49 rl~T~~f~H~~~~Hl~~N~~~l~~~g~~~E~~~G~~~~~~~~~~~~~~~~l~~~~~~~~~~vGaSG~v~gl~~~~~~~~~  128 (189)
T d2nr9a1          49 RYISHTLVHLSNLHILFNLSWFFIFGGMIERTFGSVKLLMLYVVASAITGYVQNYVSGPAFFGLSGVVYAVLGYVFIRDK  128 (189)
T ss_dssp             HHHHGGGCCSSHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHCSCCCCSHHHHHHHHHHHHHHHH
T ss_pred             HhHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhcCCCCcccchHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999999999999 66555432     334666543221   


Q ss_pred             --------------HHHHHHHHHHHHh-cCchHhHHHHHHHHHHHHHHHHHHhh
Q 045959          189 --------------TLVVIIAINLAVG-ILPHVDNFAHIGGFMAGFLLGFVLLL  227 (303)
Q Consensus       189 --------------~l~~~~~~~l~~g-~~p~v~~~aHlgG~l~G~l~g~~l~~  227 (303)
                                    .++..+.+.+... ..+++|++||++|+++|+++|++..+
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~aHl~G~l~G~~~g~~~~~  182 (189)
T d2nr9a1         129 LNHHLFDLPEGFFTMLLVGIALGFISPLFGVEMGNAAHISGLIVGLIWGFIDSK  182 (189)
T ss_dssp             SSTTSCCCCCSSTTTTTTTTTHHHHSCSSCCTTCHHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhHhccHHHHHHHHHHHHHHHHHHhccCCChHHHHHHHHHHHHHHHHHHHHc
Confidence                          1111222223322 24799999999999999999988754