Citrus Sinensis ID: 045965

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140
Protein Sequence
IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL
Secondary Structure (PSIPRED)
ccccEEEEccccccccEEEEEEccccccEEccccEEEEEEcccccccEEEEEEEEcEEccEEEEEEEcccEEEEEcccEEEEEcccccEEEcccccccccccEEEEEEEcccccEEEEEEEEEEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEccccccccEEEEEEccccccEEEEEEHHHHHEcccccccEEEEEEcEEEEcccEEEEEEcccEEEEEcccEEEEEccccccEEEcccccccccccEEEEEEccccccEEEEEEEEccEEEEEEcccEEEccc
Coil and Loop (DISEMBL)
ihggslrasddfsgnghlielrsssssslyEYITLKElmldsnfrgggIAIINSIRttvdncyishfttagisiqdghetYIRNSFIgqhiniggddrekdfsgiginitgndnavTDVVIFSASIGVMVQGQANMLTGL
Flexible Loop (DISEMBL)
ihggslrasddfsgNGHLIelrssssssLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL
Low Complexity Region (SEG)
IHGGSLRASDDFSGNGHLIELRssssssLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL
Disordered region (IsUnstruct)
****************************LYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQG********
Disordered Region (DISOPRED)
****SLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANML***
Disordered Region (DISEMBL)
IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL
Disordered Region (DISPRO)
**GGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTG*
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	140	2.2.26 [Sep-21-2011]
O49432	481	Polygalacturonase QRT3 OS	yes	no	1.0	0.291	0.622	4e-46

>sp|O49432|QRT3_ARATH Polygalacturonase QRT3 OS=Arabidopsis thaliana GN=QRT3 PE=2 SV=1

 Score =  182 bits (463), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 89/143 (62%), Positives = 114/143 (79%), Gaps = 3/143 (2%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSS--SLYEYITLKELMLDSNFRGGGIAIINSIRTT 58
           I GG+LRAS+DF  + +LIEL+  SS    ++EYITL++L++D N+RGG IA+INS+RT+
Sbjct: 148 ISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTS 207

Query: 59  VDNCYISHF-TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVT 117
           +DNCYI+ F  T GI ++ GHETYIRNSF+GQHI  GGD  E+ FSG  IN+ GNDNAVT
Sbjct: 208 IDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVT 267

Query: 118 DVVIFSASIGVMVQGQANMLTGL 140
           D VIFSA IGVMV GQAN+L+G+
Sbjct: 268 DTVIFSARIGVMVSGQANLLSGV 290

Polygalacturonase required for degrading the pollen mother cell wall during microspore development.
Arabidopsis thaliana (taxid: 3702)
EC: 3EC: .EC: 2EC: .EC: 1EC: .EC: 1EC: 5

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
297735736	478	unnamed protein product [Vitis vinifera]	1.0	0.292	0.807	4e-59
225443435	473	PREDICTED: polygalacturonase QRT3-like [	1.0	0.295	0.807	4e-59
449446861	417	PREDICTED: polygalacturonase QRT3-like [	1.0	0.335	0.735	5e-55
255582738	492	conserved hypothetical protein [Ricinus	1.0	0.284	0.692	2e-50
449433507	515	PREDICTED: polygalacturonase QRT3-like [	1.0	0.271	0.608	7e-50
357449209	497	Polygalacturonase QRT3 [Medicago truncat	1.0	0.281	0.646	1e-49
356532616	472	PREDICTED: polygalacturonase QRT3-like [	1.0	0.296	0.650	2e-49
356551020	489	PREDICTED: polygalacturonase QRT3-like [	1.0	0.286	0.676	4e-49
224088096	496	predicted protein [Populus trichocarpa]	1.0	0.282	0.692	1e-48
224157676	336	predicted protein [Populus trichocarpa]	1.0	0.416	0.692	5e-48

>gi|297735736|emb|CBI18423.3| unnamed protein product [Vitis vinifera]

 Score =  232 bits (592), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 126/140 (90%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
           IHGGSLRAS DF  + HLIEL SSS S  YEYITLK+LMLDSNFRGGGIAI+NS+RTTVD
Sbjct: 141 IHGGSLRASSDFLTDRHLIELWSSSKSLSYEYITLKDLMLDSNFRGGGIAIVNSVRTTVD 200

Query: 61  NCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVV 120
           NCYISHFTT GI IQ GHETY+R+SFIGQHI +GGD REKDFSGIGINI GNDNAVTDVV
Sbjct: 201 NCYISHFTTNGILIQGGHETYVRSSFIGQHITVGGDPREKDFSGIGINIVGNDNAVTDVV 260

Query: 121 IFSASIGVMVQGQANMLTGL 140
           +FSA+IGV++QGQAN+LTG+
Sbjct: 261 VFSAAIGVLIQGQANVLTGV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225443435|ref|XP_002267966.1| PREDICTED: polygalacturonase QRT3-like [Vitis vinifera]

 Score =  232 bits (591), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 113/140 (80%), Positives = 126/140 (90%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
           IHGGSLRAS DF  + HLIEL SSS S  YEYITLK+LMLDSNFRGGGIAI+NS+RTTVD
Sbjct: 141 IHGGSLRASSDFLTDRHLIELWSSSKSLSYEYITLKDLMLDSNFRGGGIAIVNSVRTTVD 200

Query: 61  NCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVV 120
           NCYISHFTT GI IQ GHETY+R+SFIGQHI +GGD REKDFSGIGINI GNDNAVTDVV
Sbjct: 201 NCYISHFTTNGILIQGGHETYVRSSFIGQHITVGGDPREKDFSGIGINIVGNDNAVTDVV 260

Query: 121 IFSASIGVMVQGQANMLTGL 140
           +FSA+IGV++QGQAN+LTG+
Sbjct: 261 VFSAAIGVLIQGQANVLTGV 280

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449446861|ref|XP_004141189.1| PREDICTED: polygalacturonase QRT3-like [Cucumis sativus] gi|449489567|ref|XP_004158350.1| PREDICTED: polygalacturonase QRT3-like [Cucumis sativus]

 Score =  218 bits (556), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 103/140 (73%), Positives = 120/140 (85%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
           IHGGSLRAS+ F  NGHLIELR SS + +YEYITLK+LML+ NFRGGGIAIINS+RTTVD
Sbjct: 82  IHGGSLRASESFPSNGHLIELRPSSPAVMYEYITLKDLMLNCNFRGGGIAIINSLRTTVD 141

Query: 61  NCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVV 120
           NCYISHF + GI I+ GHE+YIRNSFIGQHIN+GGD  EKDFSGIG+ I GNDN + D+V
Sbjct: 142 NCYISHFMSEGIVIEGGHESYIRNSFIGQHINVGGDRGEKDFSGIGVKIMGNDNLLRDIV 201

Query: 121 IFSASIGVMVQGQANMLTGL 140
           I+SA IGVMV GQAN++ G+
Sbjct: 202 IYSAEIGVMVLGQANVMMGV 221

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255582738|ref|XP_002532146.1| conserved hypothetical protein [Ricinus communis] gi|223528182|gb|EEF30245.1| conserved hypothetical protein [Ricinus communis]

 Score =  203 bits (517), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 97/140 (69%), Positives = 117/140 (83%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSSSLYEYITLKELMLDSNFRGGGIAIINSIRTTVD 60
           I GG+LRAS+DF  +G+LI+L  SS+S  YEYITLK+LMLD NFRGGGI++INS+RT++D
Sbjct: 163 ISGGTLRASNDFPADGYLIDLSGSSTSYNYEYITLKDLMLDCNFRGGGISVINSLRTSID 222

Query: 61  NCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTDVV 120
           NCY++HF T GI +Q GHETYIRNSFIGQHI  GGD  E++FSG GIN+ GNDNAVTDVV
Sbjct: 223 NCYVAHFNTDGIFVQRGHETYIRNSFIGQHITAGGDSGERNFSGTGINLMGNDNAVTDVV 282

Query: 121 IFSASIGVMVQGQANMLTGL 140
           IFSA IGVMV G  N L+G+
Sbjct: 283 IFSAGIGVMVSGPGNTLSGV 302

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449433507|ref|XP_004134539.1| PREDICTED: polygalacturonase QRT3-like [Cucumis sativus] gi|449490642|ref|XP_004158664.1| PREDICTED: polygalacturonase QRT3-like [Cucumis sativus]

 Score =  201 bits (512), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 101/166 (60%), Positives = 123/166 (74%), Gaps = 26/166 (15%)

Query: 1   IHGGSLRASDDFSGNGHLIELR--------------------------SSSSSSLYEYIT 34
           IHGGSLRASDDF  +G+LIEL                           SS SS  YEYI+
Sbjct: 159 IHGGSLRASDDFPSDGYLIELSSSSSAPKNSFDNQKTINSSSQDAILISSPSSYNYEYIS 218

Query: 35  LKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIG 94
            K+L+LDSNFRGGGI+++NS+R T+DNCYI+HFTT GIS+Q GHETYIR+SF+GQHI  G
Sbjct: 219 FKDLLLDSNFRGGGISVLNSLRITIDNCYITHFTTIGISVQGGHETYIRSSFLGQHITAG 278

Query: 95  GDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL 140
           GD  E++FSG GI++ GNDNAVTDVVIFSA+ GV+VQGQAN+LTG+
Sbjct: 279 GDPGERNFSGTGISLLGNDNAVTDVVIFSAATGVLVQGQANVLTGV 324

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357449209|ref|XP_003594881.1| Polygalacturonase QRT3 [Medicago truncatula] gi|355483929|gb|AES65132.1| Polygalacturonase QRT3 [Medicago truncatula]

 Score =  201 bits (510), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 97/150 (64%), Positives = 122/150 (81%), Gaps = 10/150 (6%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSS----------SSSLYEYITLKELMLDSNFRGGGIA 50
           IHGG+++AS+DF  +G++I+L +SS          SS  +EYITLK+L+LDSNFRGGGI+
Sbjct: 156 IHGGTIKASNDFPNDGYIIDLSTSSNENDGKNSPSSSYNFEYITLKDLLLDSNFRGGGIS 215

Query: 51  IINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT 110
           +INS+RT +DNCYI+HFTT GI +Q GHETYIRNSF+GQHI  GGD  E++FSG GINI 
Sbjct: 216 VINSLRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGINIQ 275

Query: 111 GNDNAVTDVVIFSASIGVMVQGQANMLTGL 140
           GNDNAVTDVVIFSA+IG+MV GQAN  +G+
Sbjct: 276 GNDNAVTDVVIFSAAIGIMVTGQANTFSGV 305

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356532616|ref|XP_003534867.1| PREDICTED: polygalacturonase QRT3-like [Glycine max]

 Score =  200 bits (508), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 95/146 (65%), Positives = 120/146 (82%), Gaps = 6/146 (4%)

Query: 1   IHGGSLRASDDFSGNGHLIEL------RSSSSSSLYEYITLKELMLDSNFRGGGIAIINS 54
           IHGG++RASD+F  +G++I+L      R+S  S  +E+ITLKEL+LDSNFRGGGI++INS
Sbjct: 135 IHGGTIRASDNFPEDGYIIDLSPSSNGRNSLPSYNFEFITLKELLLDSNFRGGGISVINS 194

Query: 55  IRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDN 114
           +RT +DNCYI+HFTT GI +Q GHETYIRNSF+GQHI  GGD  E++FSG GI + GNDN
Sbjct: 195 LRTNIDNCYITHFTTNGILVQSGHETYIRNSFLGQHITAGGDKNERNFSGTGITLQGNDN 254

Query: 115 AVTDVVIFSASIGVMVQGQANMLTGL 140
           AVTDVVIFSA+IG+MV GQAN  +G+
Sbjct: 255 AVTDVVIFSAAIGIMVTGQANAFSGV 280

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356551020|ref|XP_003543877.1| PREDICTED: polygalacturonase QRT3-like [Glycine max]

 Score =  199 bits (505), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 96/142 (67%), Positives = 118/142 (83%), Gaps = 2/142 (1%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSS--SSSSLYEYITLKELMLDSNFRGGGIAIINSIRTT 58
           IHGG++RAS+ F  +GHLI+L +S  S+S  YEYITLK L+LDSNFRGGGIAI NS+R  
Sbjct: 156 IHGGTIRASNLFPPDGHLIDLSTSGESNSYNYEYITLKNLLLDSNFRGGGIAIKNSLRIN 215

Query: 59  VDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVTD 118
           +DNCYI+HF+T GI +Q GHETYIRN+F+GQHI  GGD  E+DFSG GI++ GNDNAVTD
Sbjct: 216 IDNCYITHFSTTGILVQSGHETYIRNTFLGQHITAGGDKHERDFSGTGISLQGNDNAVTD 275

Query: 119 VVIFSASIGVMVQGQANMLTGL 140
           VVIFSA IG++V GQAN L+G+
Sbjct: 276 VVIFSADIGILVTGQANTLSGV 297

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224088096|ref|XP_002335114.1| predicted protein [Populus trichocarpa] gi|224137804|ref|XP_002326444.1| predicted protein [Populus trichocarpa] gi|222832896|gb|EEE71373.1| predicted protein [Populus trichocarpa] gi|222833766|gb|EEE72243.1| predicted protein [Populus trichocarpa]

 Score =  197 bits (501), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 120/143 (83%), Gaps = 3/143 (2%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSSSL---YEYITLKELMLDSNFRGGGIAIINSIRT 57
           I GG+L ASDDF  +G+LI+L +SSSSS    YEYIT+K+LMLD  FRGGGI++INS+RT
Sbjct: 162 ISGGTLTASDDFPTDGYLIDLSASSSSSSSYNYEYITIKDLMLDCKFRGGGISVINSLRT 221

Query: 58  TVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVT 117
           ++DNCYI+HF T GIS+Q+GHETYIRNSF+GQHI  GGD  E+ FSG  IN+ GNDNAVT
Sbjct: 222 SIDNCYITHFNTEGISVQNGHETYIRNSFLGQHITAGGDPGERKFSGTAINLMGNDNAVT 281

Query: 118 DVVIFSASIGVMVQGQANMLTGL 140
           DVVIFSA+IGVMV GQAN L+G+
Sbjct: 282 DVVIFSAAIGVMVSGQANTLSGV 304

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224157676|ref|XP_002337878.1| predicted protein [Populus trichocarpa] gi|222869958|gb|EEF07089.1| predicted protein [Populus trichocarpa]

 Score =  195 bits (496), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 99/143 (69%), Positives = 120/143 (83%), Gaps = 3/143 (2%)

Query: 1   IHGGSLRASDDFSGNGHLIELRSSSSSSL---YEYITLKELMLDSNFRGGGIAIINSIRT 57
           I GG+L ASDDF  +G+LI+L +SSSSS    YEYIT+K+LMLD  FRGGGI++INS+RT
Sbjct: 2   ISGGTLTASDDFPTDGYLIDLSASSSSSSSYNYEYITIKDLMLDCKFRGGGISVINSLRT 61

Query: 58  TVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVT 117
           ++DNCYI+HF T GIS+Q+GHETYIRNSF+GQHI  GGD  E+ FSG  IN+ GNDNAVT
Sbjct: 62  SIDNCYITHFNTEGISVQNGHETYIRNSFLGQHITAGGDPGERKFSGTAINLMGNDNAVT 121

Query: 118 DVVIFSASIGVMVQGQANMLTGL 140
           DVVIFSA+IGVMV GQAN L+G+
Sbjct: 122 DVVIFSAAIGVMVSGQANTLSGV 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	140
TAIR|locus:2119832	481	QRT3 "QUARTET 3" [Arabidopsis	1.0	0.291	0.615	5.7e-43
TAIR|locus:2119817	483	AT4G20040 "AT4G20040" [Arabido	0.792	0.229	0.585	4.6e-34

TAIR|locus:2119832 QRT3 "QUARTET 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 454 (164.9 bits), Expect = 5.7e-43, P = 5.7e-43
 Identities = 88/143 (61%), Positives = 111/143 (77%)

Query:     1 IHGGSLRASDDFSGNGHLIELRXXXXXXLY--EYITLKELMLDSNFRGGGIAIINSIRTT 58
             I GG+LRAS+DF  + +LIEL+       Y  EYITL++L++D N+RGG IA+INS+RT+
Sbjct:   148 ISGGTLRASNDFPVDRYLIELKDESSKLQYIFEYITLRDLLIDCNYRGGAIAVINSLRTS 207

Query:    59 VDNCYISHF-TTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITGNDNAVT 117
             +DNCYI+ F  T GI ++ GHETYIRNSF+GQHI  GGD  E+ FSG  IN+ GNDNAVT
Sbjct:   208 IDNCYITRFGDTNGILVKSGHETYIRNSFLGQHITAGGDRGERSFSGTAINLMGNDNAVT 267

Query:   118 DVVIFSASIGVMVQGQANMLTGL 140
             D VIFSA IGVMV GQAN+L+G+
Sbjct:   268 DTVIFSARIGVMVSGQANLLSGV 290

GO:0005576 "extracellular region" evidence=ISM

GO:0010584 "pollen exine formation" evidence=RCA;IMP

GO:0004650 "polygalacturonase activity" evidence=IDA

GO:0009556 "microsporogenesis" evidence=IMP

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2119817 AT4G20040 "AT4G20040" [Arabidopsis thaliana (taxid:3702)]

 Score = 370 (135.3 bits), Expect = 4.6e-34, P = 4.6e-34
 Identities = 65/111 (58%), Positives = 85/111 (76%)

Query:    30 YEYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ 89
             YE +T ++++ DS FRGGGI +I+S R  + NCY  HFTT GI +Q GHETYI NSF+GQ
Sbjct:   190 YEDVTFQDVLFDSRFRGGGILVIDSARIRITNCYFLHFTTQGIKVQGGHETYISNSFLGQ 249

Query:    90 HINIGGDDREKDFSGIGINITGNDNAVTDVVIFSASIGVMVQGQANMLTGL 140
             H  +GGD  E+ F+G GI+I+ NDNA+TDVVIFSA IG+ + G ANM+TG+
Sbjct:   250 HSTVGGDREERGFTGTGIDISSNDNAITDVVIFSAGIGISLNGGANMVTGV 300


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.320   0.140   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      140       134   0.00091  102 3  11 22  0.41    31
                                                     30  0.44    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  495 (53 KB)
  Total size of DFA:  110 KB (2076 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  11.52u 0.11s 11.63t   Elapsed:  00:00:00
  Total cpu time:  11.52u 0.11s 11.63t   Elapsed:  00:00:00
  Start:  Fri May 10 12:40:53 2013   End:  Fri May 10 12:40:53 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005576 "extracellular region" evidence=ISM

GO:0008150 "biological_process" evidence=ND

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	140
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	95.8
PF13229	158	Beta_helix: Right handed beta helix region; PDB: 2	94.66
PF07602	246	DUF1565: Protein of unknown function (DUF1565); In	92.53
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	89.98
PF05048	236	NosD: Periplasmic copper-binding protein (NosD); I	89.94
PF12708	225	Pectate_lyase_3: Pectate lyase superfamily protein	87.21
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	86.63
TIGR03805	314	beta_helix_1 parallel beta-helix repeat-containing	80.71

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=95.80  E-value=0.017  Score=40.24  Aligned_cols=86  Identities=24%  Similarity=0.424  Sum_probs=47.8

Q ss_pred             cceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEee-
Q 045965           32 YITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT-  110 (140)
Q Consensus        32 ~It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~-  110 (140)
                      .+++++..|... .+-|+.+.++-...|.||-|.. ...||.++..-+..|++|.+-+..             .+|.+. 
T Consensus        10 ~~~i~~~~i~~~-~~~gi~~~~~~~~~i~n~~i~~-~~~gi~~~~~~~~~i~~~~~~~~~-------------~~i~~~~   74 (158)
T PF13229_consen   10 NVTIRNCTISNN-GGDGIHVSGSSNITIENCTISN-GGYGIYVSGGSNVTISNNTISDNG-------------SGIYVSG   74 (158)
T ss_dssp             C-EEESEEEESS-SSECEEE-SSCESEEES-EEES-STTSEEEECCES-EEES-EEES-S-------------EEEECCS
T ss_pred             CeEEeeeEEEeC-CCeEEEEEcCCCeEEECeEEEC-CCcEEEEecCCCeEEECeEEEEcc-------------ceEEEEe
Confidence            355666555544 4556666666666777777777 677777777777777777665443             333333 


Q ss_pred             CCCceeeEEEEEeeee-eEEEec
Q 045965          111 GNDNAVTDVVIFSASI-GVMVQG  132 (140)
Q Consensus       111 gNDn~vtdvvIfsA~i-Gv~v~g  132 (140)
                      +++..+.+..|....- ||.+..
T Consensus        75 ~~~~~i~~~~i~~~~~~gi~~~~   97 (158)
T PF13229_consen   75 SSNITIENNRIENNGDYGIYISN   97 (158)
T ss_dssp             -CS-EEES-EEECSSS-SCE-TC
T ss_pred             cCCceecCcEEEcCCCccEEEec
Confidence            4466777777766655 777653

>PF13229 Beta_helix: Right handed beta helix region; PDB: 2INV_C 2INU_C 1RU4_A

Probab=94.66  E-value=0.14  Score=35.69  Aligned_cols=87  Identities=23%  Similarity=0.365  Sum_probs=44.2

Q ss_pred             ceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEee--
Q 045965           33 ITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT--  110 (140)
Q Consensus        33 It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~--  110 (140)
                      +++++-.|..  .+-|+.+-+.-...+.+|+|..-. .|+.+..+....|++|-+-+.-..            ||.+.  
T Consensus        34 ~~i~n~~i~~--~~~gi~~~~~~~~~i~~~~~~~~~-~~i~~~~~~~~~i~~~~i~~~~~~------------gi~~~~~   98 (158)
T PF13229_consen   34 ITIENCTISN--GGYGIYVSGGSNVTISNNTISDNG-SGIYVSGSSNITIENNRIENNGDY------------GIYISNS   98 (158)
T ss_dssp             SEEES-EEES--STTSEEEECCES-EEES-EEES-S-EEEECCS-CS-EEES-EEECSSS-------------SCE-TCE
T ss_pred             eEEECeEEEC--CCcEEEEecCCCeEEECeEEEEcc-ceEEEEecCCceecCcEEEcCCCc------------cEEEecc
Confidence            5666555555  666676766667777777777655 677777777777766665444211            34443  


Q ss_pred             CCCceeeEEEEEeee-eeEEEeccc
Q 045965          111 GNDNAVTDVVIFSAS-IGVMVQGQA  134 (140)
Q Consensus       111 gNDn~vtdvvIfsA~-iGv~v~g~A  134 (140)
                      +.+..|.+-.+.... -|+.+....
T Consensus        99 ~~~~~i~~n~~~~~~~~gi~~~~~~  123 (158)
T PF13229_consen   99 SSNVTIENNTIHNNGGSGIYLEGGS  123 (158)
T ss_dssp             ECS-EEES-EEECCTTSSCEEEECC
T ss_pred             CCCEEEEeEEEEeCcceeEEEECCC
Confidence            335555555555544 555554443

>PF07602 DUF1565: Protein of unknown function (DUF1565); InterPro: IPR011459 These proteins share a region of homology in their N termini, and are found in several phylogenetically diverse bacteria and in the archaeon Methanosarcina acetivorans

Probab=92.53  E-value=1  Score=38.00  Aligned_cols=81  Identities=30%  Similarity=0.427  Sum_probs=53.3

Q ss_pred             cccceEEEEceeeeeeceeEEeeeecceEEEecCc--eeEEeeeeeeeeeeecCCCCcccceeEEEEeeCC----Cceee
Q 045965           44 FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH--ETYIRNSFIGQHINIGGDDREKDFSGIGINITGN----DNAVT  117 (140)
Q Consensus        44 ~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH--Et~I~~sflGq~~t~ggd~~e~~fsgtaI~l~gN----Dn~vt  117 (140)
                      .||.|+.|-.+ -.+|.||.|.|...+||.|.+-+  ..+-.+.+-|-.++         +..+||.+..+    +|.|.
T Consensus       112 ~~g~Gi~Iess-~~tI~Nntf~~~~~~GI~v~g~~~~~~i~~~vI~GN~~~---------~~~~Gi~i~~~~~~~~n~I~  181 (246)
T PF07602_consen  112 ARGTGIWIESS-SPTIANNTFTNNGREGIFVTGTSANPGINGNVISGNSIY---------FNKTGISISDNAAPVENKIE  181 (246)
T ss_pred             CcceEEEEecC-CcEEEeeEEECCccccEEEEeeecCCcccceEeecceEE---------ecCcCeEEEcccCCccceee
Confidence            69999998666 89999999999999999985543  22212222222222         33334444433    45677


Q ss_pred             EEEEEeeeeeEEEeccc
Q 045965          118 DVVIFSASIGVMVQGQA  134 (140)
Q Consensus       118 dvvIfsA~iGv~v~g~A  134 (140)
                      +=+|.-=.+||.+.++|
T Consensus       182 NN~I~~N~~Gi~~~~~~  198 (246)
T PF07602_consen  182 NNIIENNNIGIVAIGDA  198 (246)
T ss_pred             ccEEEeCCcCeEeeccC
Confidence            77787777899988766

Some of these proteins also contain characterised domains such as IPR001119 from INTERPRO (e.g. Q8YWJ6 from SWISSPROT) and IPR005084 from INTERPRO (e.g. Q9FBS2 from SWISSPROT).

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=89.98  E-value=2  Score=33.56  Aligned_cols=83  Identities=23%  Similarity=0.350  Sum_probs=45.7

Q ss_pred             EEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeee---eecCCCC-c---ccc--eeEEEEeeCC-CceeeEE
Q 045965           50 AIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHI---NIGGDDR-E---KDF--SGIGINITGN-DNAVTDV  119 (140)
Q Consensus        50 ~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~---t~ggd~~-e---~~f--sgtaI~l~gN-Dn~vtdv  119 (140)
                      .+.++...+|.+|-+.+- ..||.+...+..-|+++.+-...   .+..... .   ..+  .+.||.|.+. ++.|++=
T Consensus        39 ~~~~s~~~~I~~n~i~~~-~~GI~~~~s~~~~i~~n~i~~n~~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~N  117 (236)
T PF05048_consen   39 YVENSDNNTISNNTISNN-RYGIHLMGSSNNTIENNTISNNGYGIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISNN  117 (236)
T ss_pred             EEEEcCCeEEEeeEEECC-CeEEEEEccCCCEEEeEEEEccCCCEEEEcCCCcEEECCEecCCCceEEEeeCCceEEECc
Confidence            555555555555554444 55555555555555555444321   1111110 0   000  1127777755 4689988


Q ss_pred             EEEeeeeeEEEecc
Q 045965          120 VIFSASIGVMVQGQ  133 (140)
Q Consensus       120 vIfsA~iGv~v~g~  133 (140)
                      .|.....||.+...
T Consensus       118 ~i~~~~~GI~l~~s  131 (236)
T PF05048_consen  118 TISNNGYGIYLSSS  131 (236)
T ss_pred             EEeCCCEEEEEEeC
Confidence            88899999998874

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF05048 NosD: Periplasmic copper-binding protein (NosD); InterPro: IPR007742 Bacterial nitrous oxide (N(2)O) reductase is the terminal oxidoreductase of a respiratory process that generates dinitrogen from N(2)O

Probab=89.94  E-value=3.8  Score=31.99  Aligned_cols=104  Identities=23%  Similarity=0.364  Sum_probs=59.7

Q ss_pred             ecceeeeeeeccccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeee---eeecCCCC----ccc--
Q 045965           31 EYITLKELMLDSNFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQH---INIGGDDR----EKD--  101 (140)
Q Consensus        31 e~It~rdlllD~~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~---~t~ggd~~----e~~--  101 (140)
                      ..+++++..+..+  .-|+.+..+-...|.+|.+.+-. .||.+....+.-|+++-+-..   +.+-+...    ...  
T Consensus        44 ~~~~I~~n~i~~~--~~GI~~~~s~~~~i~~n~i~~n~-~Gi~l~~s~~~~I~~N~i~~n~~GI~l~~s~~~~I~~N~i~  120 (236)
T PF05048_consen   44 DNNTISNNTISNN--RYGIHLMGSSNNTIENNTISNNG-YGIYLMGSSNNTISNNTISNNGYGIYLYGSSNNTISNNTIS  120 (236)
T ss_pred             CCeEEEeeEEECC--CeEEEEEccCCCEEEeEEEEccC-CCEEEEcCCCcEEECCEecCCCceEEEeeCCceEEECcEEe
Confidence            4455555555444  44566666666666666666555 666666655445544433221   11111110    011  


Q ss_pred             ceeEEEEeeC-CCceeeEEEEEee-eeeEE-Ee-cccccc
Q 045965          102 FSGIGINITG-NDNAVTDVVIFSA-SIGVM-VQ-GQANML  137 (140)
Q Consensus       102 fsgtaI~l~g-NDn~vtdvvIfsA-~iGv~-v~-g~AN~l  137 (140)
                      -...||.|.+ .++.|++=.|..- ..|+. +. ++.|.+
T Consensus       121 ~~~~GI~l~~s~~n~I~~N~i~~n~~~Gi~~~~~s~~n~I  160 (236)
T PF05048_consen  121 NNGYGIYLSSSSNNTITGNTISNNTDYGIYFLSGSSGNTI  160 (236)
T ss_pred             CCCEEEEEEeCCCCEEECeEEeCCCccceEEeccCCCCEE
Confidence            3567888887 6899999888888 89998 43 334444

To attain its functional state, the enzyme is subjected to a maturation process which involves the protein-driven synthesis of a unique copper-sulphur cluster and metallation of the binuclear Cu(A) site in the periplasm. NosD is a periplasmic protein which is thought to insert copper into the exported reductase apoenzyme [].

>PF12708 Pectate_lyase_3: Pectate lyase superfamily protein; PDB: 3EQN_A 3EQO_A 2PYG_A 2PYH_A 3SUC_A 3GQ7_A 3GQ9_A 3GQA_A 3GQ8_A 2VBE_A

Probab=87.21  E-value=10  Score=28.20  Aligned_cols=43  Identities=26%  Similarity=0.340  Sum_probs=32.2

Q ss_pred             ceeeeeeeccccccc-----eEEEEceeeeeeceeEEeeeecceEEEe
Q 045965           33 ITLKELMLDSNFRGG-----GIAIINSIRTTVDNCYISHFTTAGISIQ   75 (140)
Q Consensus        33 It~rdlllD~~~RGG-----Gi~vins~r~~i~ncy~~hF~t~GIlv~   75 (140)
                      +++++|.||++....     |+..-.+..+.|+||.+.++...|+.++
T Consensus        94 ~~i~nl~i~~~~~~~~~~~~~i~~~~~~~~~i~nv~~~~~~~~~i~~~  141 (225)
T PF12708_consen   94 IQIRNLTIDGNGIDPNNNNNGIRFNSSQNVSISNVRIENSGGDGIYFN  141 (225)
T ss_dssp             EEEEEEEEEETCGCE-SCEEEEEETTEEEEEEEEEEEES-SS-SEEEE
T ss_pred             EEEEeeEEEcccccCCCCceEEEEEeCCeEEEEeEEEEccCccEEEEE
Confidence            559999999976544     4555567789999999998877777777

...

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=86.63  E-value=8  Score=32.85  Aligned_cols=90  Identities=19%  Similarity=0.228  Sum_probs=56.9

Q ss_pred             eeeccccc--cceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEeeC-CCc
Q 045965           38 LMLDSNFR--GGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINITG-NDN  114 (140)
Q Consensus        38 lllD~~~R--GGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~g-NDn  114 (140)
                      -++|.+.+  ++..+.+.+-++.|.++.+.+-...||.+++.+..-|+++-+.-    .+++... -.+-||.+.. +|.
T Consensus        44 tvid~~~~~~~~~~i~v~a~~VtI~~ltI~~~~~~GI~v~~s~~i~I~n~~i~~----~~~~~~~-~~~~GI~~~~s~~v  118 (314)
T TIGR03805        44 TILDFSGQVGGAEGLLVTSDDVTLSDLAVENTKGDGVKVKGSDGIIIRRLRVEW----TGGPKSS-NGAYGIYPVESTNV  118 (314)
T ss_pred             cEEecccCCCCCceEEEEeCCeEEEeeEEEcCCCCeEEEeCCCCEEEEeeEEEe----ccCcccc-CCcceEEEeccCCE
Confidence            45665443  34455667778888888888887889999988888888885521    1122221 1345566653 466


Q ss_pred             eeeEEEEEeee-eeEEEec
Q 045965          115 AVTDVVIFSAS-IGVMVQG  132 (140)
Q Consensus       115 ~vtdvvIfsA~-iGv~v~g  132 (140)
                      .|.|..|..+. .||.+..
T Consensus       119 ~I~~n~i~g~~d~GIyv~~  137 (314)
T TIGR03805       119 LVEDSYVRGASDAGIYVGQ  137 (314)
T ss_pred             EEECCEEECCCcccEEECC
Confidence            67777776654 3666543

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

>TIGR03805 beta_helix_1 parallel beta-helix repeat-containing protein

Probab=80.71  E-value=13  Score=31.52  Aligned_cols=72  Identities=22%  Similarity=0.378  Sum_probs=40.6

Q ss_pred             cceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeeeeeecCCCCcccceeEEEEee-CCCceeeEEEEEee
Q 045965           46 GGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQHINIGGDDREKDFSGIGINIT-GNDNAVTDVVIFSA  124 (140)
Q Consensus        46 GGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~~t~ggd~~e~~fsgtaI~l~-gNDn~vtdvvIfsA  124 (140)
                      +=||....|-++.|.+|++.+-...||.+...+..-|+++.+-.             ..-||.++ ++|+.|.|=.+.-=
T Consensus       107 ~~GI~~~~s~~v~I~~n~i~g~~d~GIyv~~s~~~~v~nN~~~~-------------n~~GI~i~~S~~~~v~~N~~~~N  173 (314)
T TIGR03805       107 AYGIYPVESTNVLVEDSYVRGASDAGIYVGQSQNIVVRNNVAEE-------------NVAGIEIENSQNADVYNNIATNN  173 (314)
T ss_pred             cceEEEeccCCEEEECCEEECCCcccEEECCCCCeEEECCEEcc-------------CcceEEEEecCCcEEECCEEecc
Confidence            33555555556666666666555556666666666666655411             12355555 44666666666655


Q ss_pred             eeeEEE
Q 045965          125 SIGVMV  130 (140)
Q Consensus       125 ~iGv~v  130 (140)
                      ..|+++
T Consensus       174 ~~Gi~v  179 (314)
T TIGR03805       174 TGGILV  179 (314)
T ss_pred             ceeEEE
Confidence            567666

Members of this protein family contain a tandem pair of beta-helix repeats (see TIGR03804). Each repeat is expected to consist of three beta strands that form a single turn as they form a right-handed helix of stacked beta-structure. Member proteinsa occur regularly in two-gene pairs along with another uncharacterized protein family; both protein families exhibit either lipoprotein or regular signal peptides, suggesting transit through the plasma membrane, and the two may be fused. The function of the pair is unknown.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	140
1czf_A	362	Polygalacturonase II; beta helix, hydrolase; HET:	94.65
1hg8_A	349	Endopolygalacturonase; hydrolase, pectin degradati	93.95
1nhc_A	336	Polygalacturonase I; beta-helix, hydrolase; HET: M	93.7
2iq7_A	339	Endopolygalacturonase; parallel beta helix, hydrol	92.93
1k5c_A	335	Endopolygalacturonase; beta helical structure, gly	92.73
1ia5_A	339	Polygalacturonase; glycosylhydrolase, hydrolase; H	92.42
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	91.7
3gq8_A	609	Preneck appendage protein; beta helix, viral prote	89.78
3gqn_A	772	Preneck appendage protein; beta helix, beta barrel	86.61
3jur_A	448	EXO-poly-alpha-D-galacturonosidase; beta-helix, ce	85.76
1bhe_A	376	PEHA, polygalacturonase; family 28 glycosyl hydrol	84.29
3eqn_A	758	Glucan 1,3-beta-glucosidase; tandem beta-helix dom	83.94
1rmg_A	422	Rgase A, rhamnogalacturonase A; hydrolase, inverti	83.26
2uvf_A	608	Exopolygalacturonase; GH28, pectin, cell WALL, hyd	81.06

>1czf_A Polygalacturonase II; beta helix, hydrolase; HET: NAG; 1.68A {Aspergillus niger} SCOP: b.80.1.3

Probab=94.65  E-value=0.14  Score=42.80  Aligned_cols=59  Identities=8%  Similarity=0.190  Sum_probs=34.5

Q ss_pred             eecceeeeeeecc-------ccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           30 YEYITLKELMLDS-------NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        30 ye~It~rdlllD~-------~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      .++++++++.+++       +.+.=|+-+-.|-.+.|.||+|. -..++|.+++|....|+||.++.
T Consensus       156 ~~nv~i~~~~I~~~~~d~~~~~NtDGidi~~s~nV~I~n~~i~-~gDDcIaiksg~nI~i~n~~~~~  221 (362)
T 1czf_A          156 ANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVH-NQDDCLAVNSGENIWFTGGTCIG  221 (362)
T ss_dssp             CSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEE-CSSCSEEESSEEEEEEESCEEES
T ss_pred             eCCEEEEEEEEECCccccccCCCCCceeecCcceEEEEeeEEe-cCCCEEEEeCCeEEEEEEEEEeC
Confidence            4555666666654       24455665555666666666665 12356666666666666665554

>1hg8_A Endopolygalacturonase; hydrolase, pectin degradation; HET: NAG; 1.73A {Fusarium moniliforme} SCOP: b.80.1.3

Probab=93.95  E-value=0.47  Score=39.20  Aligned_cols=60  Identities=20%  Similarity=0.310  Sum_probs=42.5

Q ss_pred             eeecceeeeeeeccc---------------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           29 LYEYITLKELMLDSN---------------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        29 ~ye~It~rdlllD~~---------------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      ..++++++++.+++.               .+.=|+-+-.|-.+.|.||+|.. ..++|.+++|.-..|+||.++.
T Consensus       134 ~~~nv~i~~~~I~~~~~~~~~~~~~~~~~~~NtDGid~~~s~nV~I~n~~i~~-gDDcIaiksg~nI~i~n~~~~~  208 (349)
T 1hg8_A          134 GSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYN-QDDCVAVTSGTNIVVSNMYCSG  208 (349)
T ss_dssp             SCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEEC-SSCSEEESSEEEEEEEEEEEES
T ss_pred             ccCCEEEEEEEEECCCCccccccccccccCCCCCeEEEccccEEEEEeeEEec-CCCeEEeeCCeEEEEEeEEEeC
Confidence            356777777777752               34557777777788888888762 4577888888777788877753

>1nhc_A Polygalacturonase I; beta-helix, hydrolase; HET: MAN NAG BMA; 1.70A {Aspergillus niger} SCOP: b.80.1.3

Probab=93.70  E-value=0.41  Score=39.21  Aligned_cols=58  Identities=14%  Similarity=0.227  Sum_probs=27.7

Q ss_pred             eecceeeeeeecc-------ccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeee
Q 045965           30 YEYITLKELMLDS-------NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIG   88 (140)
Q Consensus        30 ye~It~rdlllD~-------~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflG   88 (140)
                      .++++++++.+++       +.+.=||-+..|-.+.|.||+|. -..++|.+++|.-..|+||.++
T Consensus       130 ~~nv~i~~~~I~~~~~d~~~~~ntDGidi~~s~nV~I~n~~i~-~gDDciaiksg~nI~i~n~~~~  194 (336)
T 1nhc_A          130 ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVK-NQDDCIAINSGESISFTGGTCS  194 (336)
T ss_dssp             EEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEE-SSSEEEEESSEEEEEEESCEEE
T ss_pred             eCCEEEEEEEEECCCcccccCCCCCcEEecCCCeEEEEeCEEE-cCCCEEEEeCCeEEEEEeEEEE
Confidence            4444555555444       23344444444555555555553 1234555555555555555544

>2iq7_A Endopolygalacturonase; parallel beta helix, hydrolase; HET: NAG MAN PG4; 1.94A {Colletotrichum lupini}

Probab=92.93  E-value=0.58  Score=38.34  Aligned_cols=60  Identities=7%  Similarity=0.127  Sum_probs=39.0

Q ss_pred             eeecceeeeeeeccc-------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           29 LYEYITLKELMLDSN-------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        29 ~ye~It~rdlllD~~-------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      ..++++++++.+++.       .+.=|+-+-.+-.+.|.||+|. -..++|.+++|.-..|+||.++.
T Consensus       130 ~~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~-~gDDciaiksg~nI~i~n~~~~~  196 (339)
T 2iq7_A          130 SATTLGVYDVIIDNSAGDSAGGHNTDAFDVGSSTGVYISGANVK-NQDDCLAINSGTNITFTGGTCSG  196 (339)
T ss_dssp             SCEEEEEESCEEECGGGGGTTCCSCCSEEEESCEEEEEESCEEE-CSSCSEEESSEEEEEEESCEEES
T ss_pred             ccCCEEEEEEEEECCccccccCCCCCcEEEcCcceEEEEecEEe-cCCCEEEEcCCccEEEEeEEEEC
Confidence            355666666666652       3455666667777777777764 23467777777777777776654

>1k5c_A Endopolygalacturonase; beta helical structure, glycoside hydrolase, silver-LEAF IND substance, hydrolase; HET: NAG; 0.96A {Chondrostereum purpureum} SCOP: b.80.1.3 PDB: 1kcc_A* 1kcd_A*

Probab=92.73  E-value=0.93  Score=37.36  Aligned_cols=60  Identities=20%  Similarity=0.372  Sum_probs=39.6

Q ss_pred             ceeec-ceeeeeeeccc--------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           28 SLYEY-ITLKELMLDSN--------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        28 ~~ye~-It~rdlllD~~--------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      ..+++ ++++++.+++.        ...=|+-+ .|-.+.|.||+|.. .-+.|.+++|.-..|+||.++.
T Consensus       125 ~~~~n~v~i~~v~I~~~~~d~~~~~~NtDGidi-~s~nV~I~n~~i~~-gDDcIaiksg~nI~i~n~~~~~  193 (335)
T 1k5c_A          125 GPTDAHLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKN-QDDCIAINDGNNIRFENNQCSG  193 (335)
T ss_dssp             EEEEEEEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEES-SSCSEEEEEEEEEEEESCEEES
T ss_pred             EccCCeEEEEEEEEECCCCcccccCCCCCeEcc-cCCeEEEEeeEEEc-CCCEEEeeCCeeEEEEEEEEEC
Confidence            45566 77777777763        33446667 67777777777762 2266777777777777777665

>1ia5_A Polygalacturonase; glycosylhydrolase, hydrolase; HET: MAN NAG; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3 PDB: 1ib4_A*

Probab=92.42  E-value=0.71  Score=37.90  Aligned_cols=59  Identities=17%  Similarity=0.369  Sum_probs=33.3

Q ss_pred             eecceeeeeeeccc-------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           30 YEYITLKELMLDSN-------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        30 ye~It~rdlllD~~-------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      .++++++++.+++.       .+.=||-+-.|-.+.|.||+|. -..++|.+++|.-..|+||.++.
T Consensus       135 ~~nv~i~~~~I~~~~~d~~~~~ntDGid~~~s~nV~I~n~~i~-~gDDcIaiksg~nI~i~n~~~~~  200 (339)
T 1ia5_A          135 SDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVY-NQDDCVAVNSGENIYFSGGYCSG  200 (339)
T ss_dssp             CEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEE-CSSCSEEESSEEEEEEESCEEES
T ss_pred             ccCeEEeeEEEECCccccccCCCCCcEEecCCceEEEEeeEEE-cCCCeEEEeCCeEEEEEeEEEEC
Confidence            44555555555542       3445565666666666666654 23456666666666666665543

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=91.70  E-value=2  Score=36.39  Aligned_cols=58  Identities=10%  Similarity=0.080  Sum_probs=47.1

Q ss_pred             ceeecceeeeeeec-cccccceEEEEceeeeeeceeEEeee---ecceEEEecCceeEEeeeeee
Q 045965           28 SLYEYITLKELMLD-SNFRGGGIAIINSIRTTVDNCYISHF---TTAGISIQDGHETYIRNSFIG   88 (140)
Q Consensus        28 ~~ye~It~rdlllD-~~~RGGGi~vins~r~~i~ncy~~hF---~t~GIlv~~GHEt~I~~sflG   88 (140)
                      ...++++++++.+. +.+.  ++.+..+-.+.|.||.|.--   +++||.+.+ ....|+||++.
T Consensus       133 ~~~~nv~I~~iti~nsp~~--~i~i~~~~nv~I~n~~I~~~d~~ntDGidi~~-~nV~I~n~~i~  194 (422)
T 1rmg_A          133 TDVTHFSVHDIILVDAPAF--HFTMDTCSDGEVYNMAIRGGNEGGLDGIDVWG-SNIWVHDVEVT  194 (422)
T ss_dssp             EEEEEEEEEEEEEECCSSC--SEEEEEEEEEEEEEEEEECCSSTTCCSEEEEE-EEEEEEEEEEE
T ss_pred             cccceEEEECeEEECCCce--EEEEeCcCCEEEEeEEEECCCCCCCccEeecC-CeEEEEeeEEe
Confidence            55788899998765 4443  68888888999999999862   689999999 99999999884

>3gq8_A Preneck appendage protein; beta helix, viral protein; HET: NHE; 2.00A {Bacillus phage PHI29} PDB: 3gq7_A* 3gq9_A* 3gqa_A

Probab=89.78  E-value=2.1  Score=39.03  Aligned_cols=58  Identities=21%  Similarity=0.369  Sum_probs=44.7

Q ss_pred             ceeecceeeeeee-ccccccceEEEEc-----------------eeeeeeceeEEeeeecceEEEecCceeEEeeeee
Q 045965           28 SLYEYITLKELML-DSNFRGGGIAIIN-----------------SIRTTVDNCYISHFTTAGISIQDGHETYIRNSFI   87 (140)
Q Consensus        28 ~~ye~It~rdlll-D~~~RGGGi~vin-----------------s~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sfl   87 (140)
                      ..+++++++++.+ ++.++  |+.|.+                 +-.+.|.||+|....-++|.+.+..-..|+||.+
T Consensus       140 ~~c~NV~I~gVti~NSp~~--gI~I~~~~~NDGid~DGi~fd~~S~NV~I~Nc~I~~tGDDcIaIksseNI~I~Nc~~  215 (609)
T 3gq8_A          140 RACHNVYIRDIEAVDCTLH--GIDITCGGLDYPYLGDGTTAPNPSENIWIENCEATGFGDDGITTHHSQYINILNCYS  215 (609)
T ss_dssp             ESCEEEEEEEEEEESCSSC--SEEEECSSSSCCCCCTTCCCSSCCEEEEEESCEEESCSSCSEEECSCEEEEEESCEE
T ss_pred             EeeceEEEEeeEEEeCCCC--CeEEeCCCCCccccCCCccccccceeEEEEeeEEEecCCCEEEecCCeeEEEEeEEE
Confidence            4556777777776 55443  344432                 5678899999988889999999999999999999

>3jur_A EXO-poly-alpha-D-galacturonosidase; beta-helix, cell WALL biogenesis/degradation, glycosidase; 2.05A {Thermotoga maritima}

Probab=85.76  E-value=0.84  Score=39.29  Aligned_cols=58  Identities=16%  Similarity=0.355  Sum_probs=39.5

Q ss_pred             eeecceeeeeeecc-ccccceEEEEceeeeeeceeEEeeeecceEEEecCc------------eeEEeeeee
Q 045965           29 LYEYITLKELMLDS-NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH------------ETYIRNSFI   87 (140)
Q Consensus        29 ~ye~It~rdlllD~-~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH------------Et~I~~sfl   87 (140)
                      .+++++++++.+++ +...=||-+..|-.+.|.||+|.- .-++|.+++|+            -..|+||.+
T Consensus       220 ~~~nv~i~~v~I~~~~~NtDGidi~~s~nV~I~n~~i~~-gDDcIaiksg~~~dg~~~~~ps~nI~I~n~~~  290 (448)
T 3jur_A          220 LSENVIIRNIEISSTGPNNDGIDPESCKYMLIEKCRFDT-GDDSVVIKSGRDADGRRIGVPSEYILVRDNLV  290 (448)
T ss_dssp             SCEEEEEESCEEEECSTTCCSBCCBSCEEEEEESCEEEE-SSEEEEEBCCCHHHHHHHCCCEEEEEEESCEE
T ss_pred             ccCCEEEEeEEEeeccCCCccccccCCcCEEEEeeEEEe-CCCcEEeccCccccccccCCCceeEEEEEeEE
Confidence            45667777777665 244556666667777788888765 56777787773            456778877

>1bhe_A PEHA, polygalacturonase; family 28 glycosyl hydrolase, hydrolyses polygalacturonic acid, glycosidase; 1.90A {Pectobacterium carotovorum subsp} SCOP: b.80.1.3

Probab=84.29  E-value=2.4  Score=34.93  Aligned_cols=44  Identities=16%  Similarity=0.182  Sum_probs=19.4

Q ss_pred             ecceeeeeeeccc---cccceEEEEceeeeeeceeEEeeeecceEEEe
Q 045965           31 EYITLKELMLDSN---FRGGGIAIINSIRTTVDNCYISHFTTAGISIQ   75 (140)
Q Consensus        31 e~It~rdlllD~~---~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~   75 (140)
                      ++++++++.+++.   .++=||-+..|-.+.|.||+|.. .-++|.++
T Consensus       183 ~~v~i~~v~I~~~~~~~NtDGid~~~s~nV~I~n~~i~~-gDDcIaik  229 (376)
T 1bhe_A          183 DGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIAT-GDDNVAIK  229 (376)
T ss_dssp             EEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEEC-SSCSEEEE
T ss_pred             CcEEEEeEEEECCCCCCCCceEeecCCceEEEEeCEEec-CCCeEEEc
Confidence            3444444444442   23444444445555555555431 22444444

>3eqn_A Glucan 1,3-beta-glucosidase; tandem beta-helix domains, glycosidase, hydrolase; HET: NAG BMA; 1.70A {Phanerochaete chrysosporium} PDB: 3eqo_A*

Probab=83.94  E-value=8.8  Score=36.04  Aligned_cols=83  Identities=19%  Similarity=0.245  Sum_probs=59.6

Q ss_pred             eeeecCCCCCCCeEEEeccCC-------Ccceeecceeeeeeeccccc---cceEEEEceeeeeeceeEEee-----eec
Q 045965            5 SLRASDDFSGNGHLIELRSSS-------SSSLYEYITLKELMLDSNFR---GGGIAIINSIRTTVDNCYISH-----FTT   69 (140)
Q Consensus         5 TLRAs~~Fp~D~~Liel~~~~-------s~~~ye~It~rdlllD~~~R---GGGi~vins~r~~i~ncy~~h-----F~t   69 (140)
                      +|+|++.|.. ..||.-..-.       ..-..-++.+|+|.||-.-.   +.||-...++.++|.||-|.-     -..
T Consensus       123 vIka~~~F~G-~~li~~d~y~~~G~~w~~~~~~F~r~irNlviD~t~~~~~~~gIhw~vaQatsL~Nv~i~m~~~sg~~~  201 (758)
T 3eqn_A          123 TLLAAPNFSG-IALIDADPYLAGGAQYYVNQNNFFRSVRNFVIDLRQVSGSATGIHWQVSQATSLINIVFQMSTAAGNQH  201 (758)
T ss_dssp             EEEECTTCCS-SCSEESSCBCGGGCBSSCGGGCCCEEEEEEEEECTTCSSCEEEEECCCCSSEEEEEEEEECCCSTTCCE
T ss_pred             eEecCCCCCC-cceeeccccCCCCccccccccceeeeecceEEeccccCCCceEEEEEecCceEEEEEEEEecCCCCCcc
Confidence            7899999964 5666431110       02234678999999997543   344445777899999998875     447


Q ss_pred             ceEEEecCceeEEeeeeee
Q 045965           70 AGISIQDGHETYIRNSFIG   88 (140)
Q Consensus        70 ~GIlv~~GHEt~I~~sflG   88 (140)
                      .||.++.|-..+|+++-|.
T Consensus       202 ~GI~~e~GSgg~i~Dl~f~  220 (758)
T 3eqn_A          202 QGIFMENGSGGFLGDLVFN  220 (758)
T ss_dssp             EEEEECSCCCCEEEEEEEE
T ss_pred             eeEEecCCCceEEEeeEEe
Confidence            8999999888999998773

>1rmg_A Rgase A, rhamnogalacturonase A; hydrolase, inverting, parallel beta-helix, glycosidase; HET: NAG BMA MAN GLC; 2.00A {Aspergillus aculeatus} SCOP: b.80.1.3

Probab=83.26  E-value=15  Score=30.99  Aligned_cols=60  Identities=5%  Similarity=0.071  Sum_probs=46.4

Q ss_pred             ceeecceeeeeeeccc--cccceEEEEceeeeeeceeEEeeeecceEEEec-CceeEEeeeeeee
Q 045965           28 SLYEYITLKELMLDSN--FRGGGIAIINSIRTTVDNCYISHFTTAGISIQD-GHETYIRNSFIGQ   89 (140)
Q Consensus        28 ~~ye~It~rdlllD~~--~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~-GHEt~I~~sflGq   89 (140)
                      ..+++++++++.+++.  ...=||-+-+ -.+.|.||+|. -..++|.+.+ .....|+||.++.
T Consensus       156 ~~~~nv~I~n~~I~~~d~~ntDGidi~~-~nV~I~n~~i~-~gDD~Iai~s~~~nI~I~n~~~~~  218 (422)
T 1rmg_A          156 DTCSDGEVYNMAIRGGNEGGLDGIDVWG-SNIWVHDVEVT-NKDECVTVKSPANNILVESIYCNW  218 (422)
T ss_dssp             EEEEEEEEEEEEEECCSSTTCCSEEEEE-EEEEEEEEEEE-SSSEEEEEEEEEEEEEEEEEEEES
T ss_pred             eCcCCEEEEeEEEECCCCCCCccEeecC-CeEEEEeeEEe-CCCCeEEeCCCCcCEEEEeEEEcC
Confidence            4678899999999872  2355777766 88889999986 3568899988 7888899998753

>2uvf_A Exopolygalacturonase; GH28, pectin, cell WALL, hydrolase, periplasm, beta-helix, glycosidase, EXO-activity; HET: AD0; 2.1A {Yersinia enterocolitica} PDB: 2uve_A*

Probab=81.06  E-value=2.6  Score=37.31  Aligned_cols=60  Identities=18%  Similarity=0.257  Sum_probs=45.2

Q ss_pred             eeecceeeeeeecc--ccccceEEEEceeeeeeceeEEeeeecceEEEecCc-----------eeEEeeeeeee
Q 045965           29 LYEYITLKELMLDS--NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH-----------ETYIRNSFIGQ   89 (140)
Q Consensus        29 ~ye~It~rdlllD~--~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH-----------Et~I~~sflGq   89 (140)
                      .+++++++++.+++  +.++=||-+..|-.+.|.||+|.. .-++|.+++||           ...|+||.++.
T Consensus       361 ~~~nv~i~~v~i~~~~~~NtDGidi~~s~nV~I~n~~i~~-gDD~Iaiksg~~~~g~~~~~s~nI~I~n~~~~~  433 (608)
T 2uvf_A          361 ENHNVVANGLIHQTYDANNGDGIEFGNSQNVMVFNNFFDT-GDDCINFAAGTGEKAQEQEPMKGAWLFNNYFRM  433 (608)
T ss_dssp             SCEEEEEESCEEECTTCTTCCSEEEESCEEEEEESCEEEC-SSCSEEEECCCSGGGGGSCCEEEEEEESCEECS
T ss_pred             cCCCEEEeeEEEcCCCCCCCCeEEecCCceEEEEeeEEec-CCceEEecCCcCccccccccccCEEEEeEEEeC
Confidence            44677777777766  345668888888899999999874 56788888874           56788888754

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	140
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	92.16
d1bhea_	376	Polygalacturonase {Erwinia carotovora, subsp. caro	89.71
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	86.57
d1hg8a_	349	Polygalacturonase {Fusarium moniliforme [TaxId: 11	84.45
d1k5ca_	333	Polygalacturonase {Fungus (Stereum purpureum), end	81.67
d1nhca_	336	Polygalacturonase {Fungus (Aspergillus niger), end	81.65
d1ia5a_	339	Polygalacturonase {Fungus (Aspergillus aculeatus)	80.41
d1czfa_	335	Polygalacturonase {Fungus (Aspergillus niger), end	80.19

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=92.16  E-value=0.3  Score=38.44  Aligned_cols=60  Identities=15%  Similarity=0.099  Sum_probs=42.3

Q ss_pred             eeecceeeeeeeccc---cccceEEEEceeeeeeceeEEeeeecceEEEecCc------eeEEeeeeeee
Q 045965           29 LYEYITLKELMLDSN---FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGH------ETYIRNSFIGQ   89 (140)
Q Consensus        29 ~ye~It~rdlllD~~---~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GH------Et~I~~sflGq   89 (140)
                      ..++++++++.++..   +..-|+-+..|..+.|.||+|.- ..++|.++++.      -.+|+||.+..
T Consensus       181 ~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~-gDD~i~~ks~~~~~~~~ni~i~n~~~~~  249 (376)
T d1bhea_         181 DGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIAT-GDDNVAIKAYKGRAETRNISILHNDFGT  249 (376)
T ss_dssp             SCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEEC-SSCSEEEEECTTSCCEEEEEEEEEEECS
T ss_pred             CCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeec-CCCceeeecccCCCCcceEEEEeeEEec
Confidence            446777888877763   34567878788888888888754 45777777753      36778877754

>d1bhea_ b.80.1.3 (A:) Polygalacturonase {Erwinia carotovora, subsp. carotovora [TaxId: 554]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Erwinia carotovora, subsp. carotovora [TaxId: 554]

Probab=89.71  E-value=1.6  Score=34.05  Aligned_cols=65  Identities=22%  Similarity=0.138  Sum_probs=50.7

Q ss_pred             eEEEeccCCCcceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee----eecceEEEecCceeEEeeeeeee
Q 045965           17 HLIELRSSSSSSLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH----FTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        17 ~Liel~~~~s~~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h----F~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      +||.+      ..+++++++++.| |+.+.  .+.+.++-.+.+.|+.|.-    .+++||-+.+-.-..|+||++.-
T Consensus       152 ~~i~~------~~~~nv~i~~iti~ns~~~--~~~~~~~~~v~i~n~~I~~~~~~~NtDGidi~~s~nv~I~n~~i~~  221 (376)
T d1bhea_         152 RLIQI------NKSKNFTLYNVSLINSPNF--HVVFSDGDGFTAWKTTIKTPSTARNTDGIDPMSSKNITIAYSNIAT  221 (376)
T ss_dssp             CSEEE------ESCEEEEEEEEEEECCSSC--SEEEESCEEEEEEEEEEECCTTCSSCCSEEEESCEEEEEESCEEEC
T ss_pred             eEEEE------EecccEEEEeeEEecCCce--EEEEeCCceEEEEeEeccCCccCCCcceeeccccceEEEEeceeec
Confidence            45666      4567888888776 55443  5777888899999998874    26899999999999999999843

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=86.57  E-value=1.5  Score=34.46  Aligned_cols=62  Identities=16%  Similarity=0.349  Sum_probs=46.6

Q ss_pred             ceeecceeeeeeeccc-------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeeee
Q 045965           28 SLYEYITLKELMLDSN-------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQH   90 (140)
Q Consensus        28 ~~ye~It~rdlllD~~-------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq~   90 (140)
                      ...++++++++.+++.       +..=||=+..|.++.|.||+|.- .-+.|.+++|....|+|++++..
T Consensus       133 ~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~~-gDDcIaiks~~ni~i~n~~c~~g  201 (339)
T d1ia5a_         133 AGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVYN-QDDCVAVNSGENIYFSGGYCSGG  201 (339)
T ss_dssp             ESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEEC-SSCSEEESSEEEEEEESCEEESS
T ss_pred             ecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEEc-CCCeEEecCccEEEEEEeEEecc
Confidence            4457788888888752       45568888888888888888773 56678888888888888877654

>d1hg8a_ b.80.1.3 (A:) Polygalacturonase {Fusarium moniliforme [TaxId: 117187]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fusarium moniliforme [TaxId: 117187]

Probab=84.45  E-value=1.9  Score=33.56  Aligned_cols=61  Identities=20%  Similarity=0.299  Sum_probs=48.0

Q ss_pred             ceeecceeeeeeeccc---------------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           28 SLYEYITLKELMLDSN---------------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        28 ~~ye~It~rdlllD~~---------------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      ...++++++++.++..               +..=||=+.+|..+.|.||+|.-. -+.|.++.+....|+||++..
T Consensus       133 ~~~~nv~i~~i~I~~~~~~~~~~~~~~~~~~~NtDGiDi~~s~nv~I~n~~i~~g-DD~iaik~~~ni~i~n~~~~~  208 (349)
T d1hg8a_         133 TGSSQLTISGLILDNRAGDKPNAKSGSLPAAHNTDGFDISSSDHVTLDNNHVYNQ-DDCVAVTSGTNIVVSNMYCSG  208 (349)
T ss_dssp             ESCEEEEEEEEEEECGGGSSCCTTTTTSCSCCSCCSEEEESCEEEEEEEEEEECS-SCSEEESSEEEEEEEEEEEES
T ss_pred             eccceEEEEEEEEECCCcccccccccCccccCCCCeEeeCCCCeEEEEeeeecCC-CCceEeccccceEEEEEEEeC
Confidence            4567888888888763               345788888888999999998843 467889999999999998854

>d1k5ca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Stereum purpureum), endo-polygalacturonase I [TaxId: 58369]

Probab=81.67  E-value=2.2  Score=33.66  Aligned_cols=56  Identities=21%  Similarity=0.410  Sum_probs=40.6

Q ss_pred             cceeeeeeecc--------ccccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeeee
Q 045965           32 YITLKELMLDS--------NFRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIGQ   89 (140)
Q Consensus        32 ~It~rdlllD~--------~~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflGq   89 (140)
                      +++++++.++.        ++..=||=+ +|..+.|.||+|..- -+.|.+++|....|+|++++.
T Consensus       128 ~v~i~nv~I~~~~i~~~~~~~NTDGidi-~s~nV~I~n~~i~~g-DDcIaik~g~ni~i~n~~c~~  191 (333)
T d1k5ca_         128 HLTLDGITVDDFAGDTKNLGHNTDGFDV-SANNVTIQNCIVKNQ-DDCIAINDGNNIRFENNQCSG  191 (333)
T ss_dssp             EEEEESCEEECGGGGGGGCCCSCCSEEE-ECSSEEEESCEEESS-SCSEEEEEEEEEEEESCEEES
T ss_pred             cEEEEeEEEEeeecCCCccCCCcceEeE-ecceEEEEecEEecC-CCEEEEcCccEEEEEEEEECC
Confidence            56666666654        245578876 788888888888764 557888888888888877653

>d1nhca_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase I [TaxId: 5061]

Probab=81.65  E-value=1.8  Score=33.83  Aligned_cols=57  Identities=14%  Similarity=0.232  Sum_probs=34.4

Q ss_pred             eecceeeeeeeccc-------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeee
Q 045965           30 YEYITLKELMLDSN-------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFI   87 (140)
Q Consensus        30 ye~It~rdlllD~~-------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sfl   87 (140)
                      .++++++++.++..       +..=||=+..|..+.|.||+|. -.-+.|.+++|....|+++.+
T Consensus       130 ~~nv~i~nv~I~~~~~~~~~~~NtDGidi~~s~nv~I~n~~i~-~gDDcIaik~g~ni~i~n~~c  193 (336)
T d1nhca_         130 ATNVHLNDFTIDNSDGDDNGGHNTDGFDISESTGVYISGATVK-NQDDCIAINSGESISFTGGTC  193 (336)
T ss_dssp             EEEEEEESCEEECTTHHHHTCCSCCSEEECSCEEEEEESCEEE-SSSEEEEESSEEEEEEESCEE
T ss_pred             eeEEEEEEEEEECcCCCccccCCCceEEcCCccCEeEecceEe-ecCCcEEeeccceEEEEEeee
Confidence            45666666666653       2334666666666667777665 445566666666666666433

>d1ia5a_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus aculeatus) [TaxId: 5053]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus aculeatus) [TaxId: 5053]

Probab=80.41  E-value=2.8  Score=32.73  Aligned_cols=59  Identities=14%  Similarity=0.094  Sum_probs=47.3

Q ss_pred             ceeecceeeeeee-ccccccceEEEEceeeeeeceeEEee--------eecceEEEecCceeEEeeeeee
Q 045965           28 SLYEYITLKELML-DSNFRGGGIAIINSIRTTVDNCYISH--------FTTAGISIQDGHETYIRNSFIG   88 (140)
Q Consensus        28 ~~ye~It~rdlll-D~~~RGGGi~vins~r~~i~ncy~~h--------F~t~GIlv~~GHEt~I~~sflG   88 (140)
                      ...+++++++|.| ||.+  =.+.+.++-.+.|+|..+..        .+|+||-+.+-+...|++|++-
T Consensus       110 ~~~~nv~i~gitl~nsp~--w~~~~~~s~nv~i~~v~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~  177 (339)
T d1ia5a_         110 HSLTNSVISGLKIVNSPV--QVFSVAGSDYLTLKDITIDNSDGDDNGGHNTDAFDIGTSTYVTISGATVY  177 (339)
T ss_dssp             EEEEEEEEESCEEECCSS--CCEEEESCEEEEEESCEEECGGGTTTTCCSCCSEEEESCEEEEEESCEEE
T ss_pred             EecCCCEEeceEEEcCCc--eEEEEecccEEEEEEEEEecccCCccCCCCCCccccCCCCeEEEeeeEEE
Confidence            5667777777755 4444  24677888899999999975        4899999999999999999985

>d1czfa_ b.80.1.3 (A:) Polygalacturonase {Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]}

class: All beta proteins
fold: Single-stranded right-handed beta-helix
superfamily: Pectin lyase-like
family: Galacturonase
domain: Polygalacturonase
species: Fungus (Aspergillus niger), endo-polygalacturonase II [TaxId: 5061]

Probab=80.19  E-value=1.6  Score=33.85  Aligned_cols=60  Identities=8%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             ceeecceeeeeeeccc-------cccceEEEEceeeeeeceeEEeeeecceEEEecCceeEEeeeeee
Q 045965           28 SLYEYITLKELMLDSN-------FRGGGIAIINSIRTTVDNCYISHFTTAGISIQDGHETYIRNSFIG   88 (140)
Q Consensus        28 ~~ye~It~rdlllD~~-------~RGGGi~vins~r~~i~ncy~~hF~t~GIlv~~GHEt~I~~sflG   88 (140)
                      ...++++++++.+++.       +..=||=+-.|.++.|.||+|. -.-+.|.++++....|+|+.++
T Consensus       127 i~~~nv~i~~i~I~~~~~~~~~~~NtDGidi~~s~nV~I~n~~i~-tgDDcIaiks~~ni~i~n~~c~  193 (335)
T d1czfa_         127 VQANDITFTDVTINNADGDTQGGHNTDAFDVGNSVGVNIIKPWVH-NQDDCLAVNSGENIWFTGGTCI  193 (335)
T ss_dssp             EECSSEEEESCEEECGGGGTTTCCSCCSEEECSCEEEEEESCEEE-CSSCSEEESSEEEEEEESCEEE
T ss_pred             EeeeeEEEEeEEEECcCCCcCccCCCCceEecCCCeEEEEeeEEe-cCCceEEecCceEEEEEEEEEE
Confidence            3467788888888762       3567888888889999999886 3567899999988889996554