Citrus Sinensis ID: 046001

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250------
Protein Sequence
MSQEQPRRPIKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPAGVAASVAAAARLNQSNKN
Secondary Structure (PSIPRED)
ccccccccccccccEEEcccccccccccHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHcccccccccccccccccccEEEEcccccccEEEEEEccEEccccccccccccccccccccccccccccHHHHHHHHHHHcccccccccHHHHHHHHHHHHccccccccccHHHHHHHHHHHcccccccccccHHHHHHHcccccccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccc
Secondary Structure Prediction (SSPRO)
cccccccccEEEccEEEcccccccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHcccEEEEccccccEEEEEEEcccEEEEEEcccccccccccccccccccccEEHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHccccccccccHHHHHHccHHcccccccccHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHcccccc
Coil and Loop (DISEMBL)
msqeqprrpikygdvfsVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQSAAERnekggfvghddmadvaagqgvsitetnlpgrriiteeiggqvvgqysqpsslqslappsshgevkgggiTIGEALEATAltagkkpvewsDAAAIQAAEVRAtgrinitpggVAAAAQSAATINarttrdedkTKLADILTDAtaklpadkqvtrKDAEGVAaaemrndpmltthpagVAASVAAAARLNQSNKN
Flexible Loop (DISEMBL)
msqeqprrpikygdvfsVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVsitetnlpgrrIITEEIGGQVVGQYSQPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSaatinarttrdedktkLADILTdataklpadkqvtrkDAEGVAAAEMRNDPMLTTHPAGVAASVAAAARLNQSNKN
Low Complexity Region (SEG)
MSQEQPRRPIKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYsqpsslqslappssHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVaaaaqsaatinaRTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPagvaasvaaaaRLNQSNKN
Disordered region (IsUnstruct)
***********YGDVFSVEGEIAEMA*************************************************VAAGQGVSITETNLPGRRIITEEIGGQVV************************GITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAA*******************************************************************************
Disordered Region (DISOPRED)
******R****YGDVFSVEGEIAEMAVAPRDAALMQTA******************************************GVSITETNLPGRRIITEEIGGQV************************GGITIGEALEATALTAGKKPVEWSDAAAIQAAE*********TPGGVAAAAQSAATI******DEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEM*******THPAGVAASVAA**********
Disordered Region (DISEMBL)
*********IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQK***********ERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQ*******************KGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPG********************DKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPAGVAASVAAAARLNQSNKN
Disordered Region (DISPRO)
******RRPIKYGDVFSVEGEIAEMAVAPRDAALMQTAE*A*******************************MADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPS****************GGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQS************DKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMR*****TTHPAGVAASVAAA*********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MSQEQPRRPIKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPAGVAASVAAAARLNQSNKN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	256	2.2.26 [Sep-21-2011]
P09444	264	Late embryogenesis abunda	N/A	no	0.972	0.943	0.611	4e-73

>sp|P09444|LEA34_GOSHI Late embryogenesis abundant protein D-34 OS=Gossypium hirsutum PE=4 SV=1

 Score =  274 bits (701), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 162/265 (61%), Positives = 196/265 (73%), Gaps = 16/265 (6%)

Query: 1   MSQEQPRRP------------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQK 48
           MSQ QPRRP            IKYGDVF+V GE+A   +AP+DAA+MQTAE  +LGQ QK
Sbjct: 1   MSQGQPRRPQQPAGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQK 60

Query: 49  GTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYS 108
           G  A++MQ+AA RNE+ G VGH+D+ D+A  QGV++ ET++ GRRIITE + GQVVGQY 
Sbjct: 61  GGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYV 120

Query: 109 QPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRIN 168
           Q + + +    S  G V    ITIGEALEATA TAG KPV+ SDAAA+QAAEVRATG   
Sbjct: 121 QATPVMT----SQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNV 176

Query: 169 ITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMR 228
           I PGG+AA AQSAA  NA   RDE+K KL  +LT ATAKLPADK VTR+DAEGV +AE+R
Sbjct: 177 IIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELR 236

Query: 229 NDPMLTTHPAGVAASVAAAARLNQS 253
           N+P + THP GVAAS+AAAARLN++
Sbjct: 237 NNPNVATHPGGVAASMAAAARLNEN 261

LEA proteins are late embryonic proteins abundant in higher plant seed embryos. There are two subsets of LEA proteins (5a and 5b), the first ones are expressed when the cotyledon weight reach 80 mg and the second set are expressed above 100 mg. The function of those proteins is not known.
Gossypium hirsutum (taxid: 3635)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
225432684	258	PREDICTED: late embryogenesis abundant p	0.976	0.968	0.640	1e-75
77997745	260	seed maturation protein [Medicago trunca	0.984	0.969	0.603	2e-73
147772924	258	hypothetical protein VITISV_037455 [Viti	0.976	0.968	0.633	3e-73
15228768	262	Seed maturation protein [Arabidopsis tha	0.976	0.954	0.588	3e-72
359487846	263	PREDICTED: late embryogenesis abundant p	0.941	0.916	0.669	4e-72
356535137	267	PREDICTED: late embryogenesis abundant p	0.992	0.951	0.634	7e-72
449444236	264	PREDICTED: late embryogenesis abundant p	0.976	0.946	0.574	9e-72
388497436	241	unknown [Medicago truncatula]	0.917	0.975	0.625	2e-71
126078	264	RecName: Full=Late embryogenesis abundan	0.972	0.943	0.611	2e-71
297835246	262	predicted protein [Arabidopsis lyrata su	0.984	0.961	0.581	3e-71

>gi|225432684|ref|XP_002282590.1| PREDICTED: late embryogenesis abundant protein D-34 [Vitis vinifera] gi|297737059|emb|CBI26260.3| unnamed protein product [Vitis vinifera]

 Score =  289 bits (739), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 166/259 (64%), Positives = 202/259 (77%), Gaps = 9/259 (3%)

Query: 1   MSQEQPRRP------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASM 54
           MSQEQPRRP      IKYGDVF V G +A+  VAP+DAALMQ+AE A+LGQ QKG  A+ 
Sbjct: 1   MSQEQPRRPQSDQEPIKYGDVFPVAGSLADKPVAPQDAALMQSAETAVLGQTQKGGPAAT 60

Query: 55  MQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQ 114
           MQSAA RNE+ G VGH D+ + A  +GV++TET++PGRRIITE + GQV+GQY +P+ + 
Sbjct: 61  MQSAATRNERAGLVGHTDITNAAGDEGVTVTETDVPGRRIITESVAGQVLGQYVEPTPVS 120

Query: 115 SLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGV 174
            + P  +    +   ITIGEALEATA TAG KPV+ SD+AAIQAAEVRATG   I+P GV
Sbjct: 121 QMNPTVT---ARQAAITIGEALEATAQTAGNKPVDQSDSAAIQAAEVRATGSTIISPTGV 177

Query: 175 AAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLT 234
           AAAAQSAA++N   TRDEDK KL D+L++ATA+LPADK VTR+DAEGV +AEMRN+P L 
Sbjct: 178 AAAAQSAASMNTGLTRDEDKIKLTDVLSNATARLPADKAVTRQDAEGVMSAEMRNNPNLA 237

Query: 235 THPAGVAASVAAAARLNQS 253
           THP GVA+SVAAAARLN+S
Sbjct: 238 THPGGVASSVAAAARLNES 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|77997745|gb|ABB16353.1| seed maturation protein [Medicago truncatula]

 Score =  281 bits (720), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/262 (60%), Positives = 194/262 (74%), Gaps = 10/262 (3%)

Query: 1   MSQEQPRRP------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASM 54
           MSQEQPRRP      IKYGDV  V G++++  + P DAA+MQ+AE+ +LGQ Q G  AS+
Sbjct: 1   MSQEQPRRPQAGQDPIKYGDVLPVSGDLSQKPITPEDAAMMQSAESRVLGQTQPGGVASV 60

Query: 55  MQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQ 114
           MQSAA RNE+ G VGH D+ DV   +GV++TET +PGRRIITE +GGQVVGQ+ +P+ +Q
Sbjct: 61  MQSAATRNEQAGIVGHKDVTDVTGDRGVTVTETQVPGRRIITETVGGQVVGQFVEPTPVQ 120

Query: 115 SLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGV 174
                   G V+   +TIGEALEATA T G KPVE SDA+AIQAAEVRATG   ITPGG+
Sbjct: 121 V----GLTGAVRESALTIGEALEATAHTVGDKPVEQSDASAIQAAEVRATGSNVITPGGL 176

Query: 175 AAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLT 234
           A+ AQSAA  NA   R+E+K K+ ++LT ATAKLPADK  TR+DA GVA+AEMRN+P  T
Sbjct: 177 ASMAQSAAAFNAECQREEEKIKMGNVLTGATAKLPADKAATRQDAAGVASAEMRNNPDAT 236

Query: 235 THPAGVAASVAAAARLNQSNKN 256
             P GVAASVAAAARLN++  N
Sbjct: 237 ATPGGVAASVAAAARLNENVGN 258

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147772924|emb|CAN67177.1| hypothetical protein VITISV_037455 [Vitis vinifera]

 Score =  281 bits (718), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 164/259 (63%), Positives = 199/259 (76%), Gaps = 9/259 (3%)

Query: 1   MSQEQPRRP------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASM 54
           MSQEQP RP      IKYGDVF V G +A+  VAP+DAALMQ+AE A+LGQ QKG  A+ 
Sbjct: 1   MSQEQPPRPQSDQEPIKYGDVFPVAGSLADKPVAPQDAALMQSAETAVLGQTQKGGPAAT 60

Query: 55  MQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQ 114
           MQSAA RNE+ G VGH D+ + A  +GV++TET++PGRRIITE + GQV+GQY +P+ + 
Sbjct: 61  MQSAATRNERAGLVGHTDITNAAGDEGVTVTETDVPGRRIITESVAGQVLGQYVEPTPVS 120

Query: 115 SLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGV 174
            +   +     +   ITIGEALEATA TAG KPV+ SDAAAIQ AEVRATG   I+P GV
Sbjct: 121 QM---NLTVTARQAAITIGEALEATAQTAGNKPVDQSDAAAIQEAEVRATGSTIISPTGV 177

Query: 175 AAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLT 234
           AAAAQSAA++N   TRDEDK KL D+L++ATA+LPADK VTR+DAEGV +AEMRN+P L 
Sbjct: 178 AAAAQSAASMNTGLTRDEDKIKLTDVLSNATARLPADKAVTRQDAEGVMSAEMRNNPNLA 237

Query: 235 THPAGVAASVAAAARLNQS 253
           THP GVA+SVAAAARLN+S
Sbjct: 238 THPGGVASSVAAAARLNES 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15228768|ref|NP_188888.1| Seed maturation protein [Arabidopsis thaliana] gi|11994281|dbj|BAB01464.1| seed maturation protein, LEA protein in group 5-like [Arabidopsis thaliana] gi|27754552|gb|AAO22723.1| putative LEA protein [Arabidopsis thaliana] gi|28394023|gb|AAO42419.1| putative LEA protein [Arabidopsis thaliana] gi|332643125|gb|AEE76646.1| Seed maturation protein [Arabidopsis thaliana]

 Score =  277 bits (709), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 153/260 (58%), Positives = 188/260 (72%), Gaps = 10/260 (3%)

Query: 1   MSQE-QPRRP---IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQ 56
           MSQE QP+RP   + YGDVF V GE+A+  +AP DA +MQ AE  + G  QKG AA++MQ
Sbjct: 1   MSQEEQPKRPQEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVMQ 60

Query: 57  SAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQSL 116
           SAA  N++GGFV   D  D+AA +GV++ +T++PG R+ TE +GGQVVGQY +P  + + 
Sbjct: 61  SAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEPRPVATA 120

Query: 117 APPSSHGEVKG----GGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPG 172
           A  +   EV G      ITIGEALEAT  TAG KPV+ SDAAAIQAAEVRA G   I PG
Sbjct: 121 A--AMEAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPG 178

Query: 173 GVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPM 232
           G+AA+AQSAA  NA   RDEDK KL D+L  AT KL ADK VTR+DAEGV +AE+RN+P 
Sbjct: 179 GIAASAQSAANHNATIDRDEDKIKLIDVLAGATGKLAADKAVTRQDAEGVVSAELRNNPN 238

Query: 233 LTTHPAGVAASVAAAARLNQ 252
           L+THP GVAAS+ AAARLN+
Sbjct: 239 LSTHPGGVAASITAAARLNE 258

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359487846|ref|XP_003633664.1| PREDICTED: late embryogenesis abundant protein D-34-like [Vitis vinifera] gi|298204921|emb|CBI34228.3| unnamed protein product [Vitis vinifera]

 Score =  276 bits (707), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 164/245 (66%), Positives = 191/245 (77%), Gaps = 4/245 (1%)

Query: 10  IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQSAAERNEKGGFVG 69
           IKYGDVF+V+G++    VAP DA++MQ AE  +LG+  KG AAS MQSAA +NE+ GFVG
Sbjct: 16  IKYGDVFNVQGDLGMKPVAPADASMMQAAETVVLGKTGKGAAASTMQSAAAKNERAGFVG 75

Query: 70  HDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQSLAPPSSHGEVKGGG 129
           H+   DVA  QGV+I E  LPGRR ITE IG QVVG+YS   +   L PPS+ G  + G 
Sbjct: 76  HNQGTDVAGDQGVAIAEIQLPGRRTITESIGDQVVGEYS---AAAPLTPPSAAGG-RVGA 131

Query: 130 ITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSAATINARTT 189
           ITIGEALEA AL AG KPVEWSDAAA+QAAEVRA GR    PGGV AAAQSAAT+NART+
Sbjct: 132 ITIGEALEAAALAAGGKPVEWSDAAAVQAAEVRAAGRTTTAPGGVGAAAQSAATLNARTS 191

Query: 190 RDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPAGVAASVAAAAR 249
           R+EDKTKLAD+LTDA+ KLP DK  TR+DAEGV  AE+RNDP LTT+P GVAA+VAAAAR
Sbjct: 192 RNEDKTKLADVLTDASEKLPRDKAATRRDAEGVVRAEVRNDPNLTTYPGGVAAAVAAAAR 251

Query: 250 LNQSN 254
           LNQS+
Sbjct: 252 LNQSD 256

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356535137|ref|XP_003536105.1| PREDICTED: late embryogenesis abundant protein D-34-like [Glycine max]

 Score =  276 bits (706), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 170/268 (63%), Positives = 203/268 (75%), Gaps = 14/268 (5%)

Query: 1   MSQEQPRRP------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASM 54
           MSQEQP++       IKYGDVF+V+GE+     AP DA +MQ AE    G+ QK  A + 
Sbjct: 1   MSQEQPQKENHEEEGIKYGDVFNVKGEMKSKPEAPVDAGMMQKAETETTGKTQK--AGAA 58

Query: 55  MQSAAERNEKGGFVGHDDMADVAAGQGVSITET--NLPGRRIITEEIGGQVVGQYSQPSS 112
           MQSAA +NE+GG  GH D  +VAA  GVS+TET  +L G ++I+E + GQVV Q++Q + 
Sbjct: 59  MQSAAAKNERGGMAGHKDKNNVAADGGVSVTETEAHLSGSQVISESVAGQVVKQFNQKAP 118

Query: 113 LQSLAPPSSHGEV----KGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRIN 168
           L ++ PPS   E+     G GITIGEALEAT LTAGKKPVEWSDAAAIQAAEVRATGR N
Sbjct: 119 LNTMTPPSIVQEMGAGGAGSGITIGEALEATVLTAGKKPVEWSDAAAIQAAEVRATGRTN 178

Query: 169 ITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMR 228
           I PGGVAAAAQSAAT+NAR T+DE+K KLADIL DAT+KLP+D+  TR+DAEGV  AEMR
Sbjct: 179 IVPGGVAAAAQSAATLNARVTKDEEKIKLADILADATSKLPSDRAATRRDAEGVTGAEMR 238

Query: 229 NDPMLTTHPAGVAASVAAAARLNQSNKN 256
           NDP LTTHP GV+ASVAAAARLN++N N
Sbjct: 239 NDPNLTTHPGGVSASVAAAARLNKTNTN 266

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449444236|ref|XP_004139881.1| PREDICTED: late embryogenesis abundant protein D-34-like [Cucumis sativus] gi|449492634|ref|XP_004159055.1| PREDICTED: late embryogenesis abundant protein D-34-like [Cucumis sativus]

 Score =  276 bits (705), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 150/261 (57%), Positives = 189/261 (72%), Gaps = 11/261 (4%)

Query: 1   MSQEQPRR-----PIKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMM 55
           MSQEQPRR     PIKYGDVF++ G++A   + P DA +MQTAE  + G+ QKG  A+ M
Sbjct: 1   MSQEQPRRQETQDPIKYGDVFNITGDLASKVIPPVDADMMQTAETIVFGRTQKGGPAATM 60

Query: 56  QSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQS 115
           QSAA RNE  GFVGH+D++D A  QGV++ ET++PG RIITE + GQ+VGQ+ +P+S   
Sbjct: 61  QSAATRNELSGFVGHEDVSDAARDQGVAVKETDIPGSRIITETVAGQIVGQFVEPTSFFG 120

Query: 116 LAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVA 175
            A       V    +TIG+ALEATA TAG KPV+ SDAAAIQAAEVRATG   + PGG+A
Sbjct: 121 AAA------VMQNAVTIGQALEATAHTAGDKPVDQSDAAAIQAAEVRATGSNVVIPGGLA 174

Query: 176 AAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTT 235
           A+AQSAA+ NA  ++DEDK KL D L DA  +LPADK VT++DAEGV +AE+RN+P L  
Sbjct: 175 ASAQSAASFNAGVSKDEDKIKLNDTLMDAAMRLPADKVVTKQDAEGVMSAELRNNPRLAA 234

Query: 236 HPAGVAASVAAAARLNQSNKN 256
           HP GVA S+  AARLN++  N
Sbjct: 235 HPGGVADSITEAARLNENVNN 255

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388497436|gb|AFK36784.1| unknown [Medicago truncatula]

 Score =  275 bits (702), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 164/262 (62%), Positives = 190/262 (72%), Gaps = 27/262 (10%)

Query: 1   MSQEQPRRP---IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQS 57
           MSQEQPRR    IKYGDVF+VE +I    VAP DAA+MQ AE  M G+ QKG AA+ MQS
Sbjct: 1   MSQEQPRREEEGIKYGDVFNVEDDIGSRTVAPVDAAMMQKAETQMHGKTQKGGAAASMQS 60

Query: 58  AAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQPSSLQSLA 117
           AA +NE+ G VGH+DM++ AA  GV                     V Q SQ + + ++ 
Sbjct: 61  AAMKNERDGIVGHNDMSENAADGGV---------------------VEQLSQNAPMNTMT 99

Query: 118 PPSSHGEVKGG---GITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGV 174
           P S   ++  G   G+TIGEALEATALTAG+KPVEWSDAAAIQAAEVRATGR NI PGGV
Sbjct: 100 PASLVKDMSAGADGGVTIGEALEATALTAGQKPVEWSDAAAIQAAEVRATGRTNIVPGGV 159

Query: 175 AAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLT 234
           AAAAQSAAT+NARTT++EDKTKL D+L DAT KLPAD+  TR+DAEGV  AEMRNDP LT
Sbjct: 160 AAAAQSAATLNARTTKEEDKTKLGDVLADATTKLPADRAATRRDAEGVTGAEMRNDPYLT 219

Query: 235 THPAGVAASVAAAARLNQSNKN 256
           THP GV+AS+AAAARLNQ N N
Sbjct: 220 THPGGVSASMAAAARLNQKNNN 241

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|126078|sp|P09444.1|LEA34_GOSHI RecName: Full=Late embryogenesis abundant protein D-34; Short=LEA D-34 gi|18501|emb|CAA31594.1| D-34 Lea protein [Gossypium hirsutum] gi|167385|gb|AAA33075.1| storage protein [Gossypium hirsutum] gi|226556|prf||1601521F Lea D-34 gene

 Score =  274 bits (701), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/265 (61%), Positives = 196/265 (73%), Gaps = 16/265 (6%)

Query: 1   MSQEQPRRP------------IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQK 48
           MSQ QPRRP            IKYGDVF+V GE+A   +AP+DAA+MQTAE  +LGQ QK
Sbjct: 1   MSQGQPRRPQQPAGQGENQEPIKYGDVFNVSGELANKPIAPQDAAMMQTAETQVLGQTQK 60

Query: 49  GTAASMMQSAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYS 108
           G  A++MQ+AA RNE+ G VGH+D+ D+A  QGV++ ET++ GRRIITE + GQVVGQY 
Sbjct: 61  GGTAAVMQAAATRNEQVGVVGHNDITDIAGEQGVTLAETDVAGRRIITEAVAGQVVGQYV 120

Query: 109 QPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRIN 168
           Q + + +    S  G V    ITIGEALEATA TAG KPV+ SDAAA+QAAEVRATG   
Sbjct: 121 QATPVMT----SQVGVVLQNAITIGEALEATAKTAGDKPVDQSDAAAVQAAEVRATGSNV 176

Query: 169 ITPGGVAAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMR 228
           I PGG+AA AQSAA  NA   RDE+K KL  +LT ATAKLPADK VTR+DAEGV +AE+R
Sbjct: 177 IIPGGLAATAQSAAAHNATLDRDEEKIKLNQVLTGATAKLPADKAVTRQDAEGVVSAELR 236

Query: 229 NDPMLTTHPAGVAASVAAAARLNQS 253
           N+P + THP GVAAS+AAAARLN++
Sbjct: 237 NNPNVATHPGGVAASMAAAARLNEN 261

Source: Gossypium hirsutum

Species: Gossypium hirsutum

Genus: Gossypium

Family: Malvaceae

Order: Malvales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297835246|ref|XP_002885505.1| predicted protein [Arabidopsis lyrata subsp. lyrata] gi|297331345|gb|EFH61764.1| predicted protein [Arabidopsis lyrata subsp. lyrata]

 Score =  274 bits (700), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/258 (58%), Positives = 186/258 (72%), Gaps = 6/258 (2%)

Query: 1   MSQE-QPRRP---IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQ 56
           MSQE QP+RP   +KYGDVF V GE+A+  +AP DA +MQ AE  + G  QKG AA++MQ
Sbjct: 1   MSQEDQPKRPQEPVKYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVMQ 60

Query: 57  SAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYSQP--SSLQ 114
           SAA  N++GGFV   D  D+AA +GV++ +T++PG R+ TE +GGQVVGQY +P   +  
Sbjct: 61  SAATANKRGGFVQPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEPRPVATA 120

Query: 115 SLAPPSSHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGV 174
           +     + G      ITIGEALEAT  TAG KPV+ SDAAAIQAAEVRA+G   I PGG+
Sbjct: 121 AATEAEAVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRASGTNVIAPGGI 180

Query: 175 AAAAQSAATINARTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLT 234
           AA+AQSAA  NA   RDEDK KL D+L  AT KL ADK VTR+DAEGV  AE+RN+P L+
Sbjct: 181 AASAQSAANHNATVDRDEDKIKLIDVLAGATGKLTADKAVTRQDAEGVVGAELRNNPNLS 240

Query: 235 THPAGVAASVAAAARLNQ 252
           THP GV+AS+ AAARLN+
Sbjct: 241 THPGGVSASITAAARLNE 258

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	256
TAIR|locus:2077081	262	AT3G22490 "AT3G22490" [Arabido	0.976	0.954	0.515	2.4e-60
TAIR|locus:2076996	256	ATECP31 "AT3G22500" [Arabidops	0.972	0.972	0.490	3.7e-55
TAIR|locus:2143789	192	AT5G27980 "AT5G27980" [Arabido	0.492	0.656	0.626	1.5e-39
TAIR|locus:2007529	182	RAB28 "responsive to abscisic	0.480	0.675	0.495	2.9e-25
TAIR|locus:2154252	159	AT5G53270 "AT5G53270" [Arabido	0.488	0.786	0.336	3.3e-15
TAIR|locus:2154242	176	AT5G53260 "AT5G53260" [Arabido	0.488	0.710	0.328	6.9e-15

TAIR|locus:2077081 AT3G22490 "AT3G22490" [Arabidopsis thaliana (taxid:3702)]

 Score = 618 (222.6 bits), Expect = 2.4e-60, P = 2.4e-60
 Identities = 134/260 (51%), Positives = 163/260 (62%)

Query:     1 MSQE-QPRRP---IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQ 56
             MSQE QP+RP   + YGDVF V GE+A+  +AP DA +MQ AE  + G  QKG AA++MQ
Sbjct:     1 MSQEEQPKRPQEPVTYGDVFEVSGELADKPIAPEDANMMQAAETRVFGHTQKGGAAAVMQ 60

Query:    57 SAAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYXXXXXXXXX 116
             SAA  N++GGFV   D  D+AA +GV++ +T++PG R+ TE +GGQVVGQY         
Sbjct:    61 SAATANKRGGFVHPGDTTDLAAERGVTVAQTDVPGARVTTEFVGGQVVGQYVEPRPVATA 120

Query:   117 XXXXXHGEVKG----GGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPG 172
                    EV G      ITIGEALEAT  TAG KPV+ SDAAAIQAAEVRA G   I PG
Sbjct:   121 AAM--EAEVVGLSLQSAITIGEALEATVQTAGNKPVDQSDAAAIQAAEVRACGTNVIAPG 178

Query:   173 GVXXXXXXXXXXXXRTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPM 232
             G+               RDEDK KL D+L  AT KL ADK VTR+DAEGV +AE+RN+P 
Sbjct:   179 GIAASAQSAANHNATIDRDEDKIKLIDVLAGATGKLAADKAVTRQDAEGVVSAELRNNPN 238

Query:   233 LTTHPXXXXXXXXXXXRLNQ 252
             L+THP           RLN+
Sbjct:   239 LSTHPGGVAASITAAARLNE 258

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

TAIR|locus:2076996 ATECP31 "AT3G22500" [Arabidopsis thaliana (taxid:3702)]

 Score = 569 (205.4 bits), Expect = 3.7e-55, P = 3.7e-55
 Identities = 125/255 (49%), Positives = 154/255 (60%)

Query:     1 MSQEQPRRP---IKYGDVFSVEGEIAEMAVAPRDAALMQTAENAMLGQIQKGTAASMMQS 57
             MSQEQPRRP   +KYGDVF V GE+A+  +AP DA +MQ+AE  + G  QKG  A++MQS
Sbjct:     1 MSQEQPRRPREPVKYGDVFEVSGELADKPIAPEDAKMMQSAETHVFGHTQKGGPAAVMQS 60

Query:    58 AAERNEKGGFVGHDDMADVAAGQGVSITETNLPGRRIITEEIGGQVVGQYXXXXXXXXXX 117
             AA  N +GGFV  DD  ++ A +G ++ +T +P   + TE +GGQVVGQ+          
Sbjct:    61 AATTNIRGGFVHPDDKTELVAERGATVEQT-VPAATVTTEFVGGQVVGQHVEPRRVVAAA 119

Query:   118 XXXXHGEVKGGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVXXX 177
                   E     ITIGEALEAT  TAG KPV+ SDAAAIQAAE+RA+G   I   GV   
Sbjct:   120 RTDE--EALQSTITIGEALEATVKTAGNKPVDQSDAAAIQAAEMRASGTNVIALAGVAAS 177

Query:   178 XXXXXXXXXRTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHP 237
                         RDE K KL D+LT A  KL AD+ VTR+DAEGV +AEMRN+P L THP
Sbjct:   178 AQSAADHNATVDRDERKIKLRDVLTGAAGKLSADRAVTREDAEGVVSAEMRNNPKLCTHP 237

Query:   238 XXXXXXXXXXXRLNQ 252
                        RLN+
Sbjct:   238 GGVAASLTVAARLNE 252

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0009793 "embryo development ending in seed dormancy" evidence=ISS

GO:0016114 "terpenoid biosynthetic process" evidence=RCA

TAIR|locus:2143789 AT5G27980 "AT5G27980" [Arabidopsis thaliana (taxid:3702)]

 Score = 390 (142.3 bits), Expect = 1.5e-39, Sum P(2) = 1.5e-39
 Identities = 79/126 (62%), Positives = 86/126 (68%)

Query:   128 GGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVXXXXXXXXXXXXR 187
             G ITIGEALEA  LTAG KPVEWSDAAAIQAAEVRATGR NI PGGV            R
Sbjct:    66 GTITIGEALEAAVLTAGNKPVEWSDAAAIQAAEVRATGRTNIMPGGVAASAQSAATLNAR 125

Query:   188 TTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPXXXXXXXXXX 247
                D+ KT LAD+LT A++KLP+DK  TRKDAEGV  AEMRNDP LTT+P          
Sbjct:   126 IGSDDTKTTLADVLTGASSKLPSDKAATRKDAEGVTGAEMRNDPHLTTYPTGVAASVAAA 185

Query:   248 XRLNQS 253
              R+NQS
Sbjct:   186 ARINQS 191

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0009860 "pollen tube growth" evidence=RCA

TAIR|locus:2007529 RAB28 "responsive to abscisic acid 28" [Arabidopsis thaliana (taxid:3702)]

 Score = 287 (106.1 bits), Expect = 2.9e-25, P = 2.9e-25
 Identities = 61/123 (49%), Positives = 73/123 (59%)

Query:   130 ITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVXXXXXXXXXXXXRTT 189
             +TIGEALEATAL+ G KPV+  DAAAIQAAE RATG     PGG+            +T 
Sbjct:    58 VTIGEALEATALSLGDKPVDRRDAAAIQAAETRATGESKGRPGGLAVAAQAAATTNEQTV 117

Query:   190 RDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPXXXXXXXXXXXR 249
              +EDK  +ADILTDA  +LP DK VT +DAE V  AE+R+   + T P           R
Sbjct:   118 SEEDKVNIADILTDAAERLPGDKVVTSEDAEAVVGAELRSSSEMKTTPGGVADSMSAGAR 177

Query:   250 LNQ 252
             LNQ
Sbjct:   178 LNQ 180

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

GO:0005634 "nucleus" evidence=ISS;IDA

GO:0005730 "nucleolus" evidence=IDA

GO:0006873 "cellular ion homeostasis" evidence=IMP

GO:0009845 "seed germination" evidence=IMP

GO:0010226 "response to lithium ion" evidence=IMP

TAIR|locus:2154252 AT5G53270 "AT5G53270" [Arabidopsis thaliana (taxid:3702)]

 Score = 192 (72.6 bits), Expect = 3.3e-15, P = 3.3e-15
 Identities = 42/125 (33%), Positives = 61/125 (48%)

Query:   127 GGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVXXXXXXXXXXXX 186
             G   T+ EAL+A A+  G+KPVE +D AAI+  E RA G    + GGV            
Sbjct:    27 GRSTTLTEALKAAAINVGRKPVETTDLAAIKEVEARAIGGDIESDGGVTAVASKAVARNQ 86

Query:   187 RTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPXXXXXXXXX 246
             +   D +KT L D++ +   K+  D++VT +DAE V  AE+ + P     P         
Sbjct:    87 KIGEDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHSPFNNIIPGGVAESVTA 146

Query:   247 XXRLN 251
               +LN
Sbjct:   147 AYKLN 151

GO:0003674 "molecular_function" evidence=ND

GO:0005737 "cytoplasm" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

TAIR|locus:2154242 AT5G53260 "AT5G53260" [Arabidopsis thaliana (taxid:3702)]

 Score = 189 (71.6 bits), Expect = 6.9e-15, P = 6.9e-15
 Identities = 41/125 (32%), Positives = 61/125 (48%)

Query:   127 GGGITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVXXXXXXXXXXXX 186
             G   T+ EAL+A ++  G KPVE +D AAI+  E RA G    + GGV            
Sbjct:    46 GRSTTLTEALKAASMNVGHKPVETTDVAAIKEVETRAIGGDIESEGGVTAVASKAVARNQ 105

Query:   187 RTTRDEDKTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPXXXXXXXXX 246
             +  +D +KT L D++ +   K+  D++VT +DAE V  AE+ + P     P         
Sbjct:   106 KIGKDNEKTNLGDVIAEIDVKVTRDREVTSEDAEAVIRAELNHSPFNNIIPGGVAESVAA 165

Query:   247 XXRLN 251
               +LN
Sbjct:   166 AYKLN 170


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.127   0.348    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      256       219   0.00092  112 3  11 23  0.47    33
                                                     32  0.39    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  6
  No. of states in DFA:  547 (58 KB)
  Total size of DFA:  136 KB (2086 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  15.38u 0.14s 15.52t   Elapsed:  00:00:01
  Total cpu time:  15.38u 0.14s 15.52t   Elapsed:  00:00:01
  Start:  Fri May 10 14:32:27 2013   End:  Fri May 10 14:32:28 2013

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0007275 "multicellular organismal development" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
P09444	LEA34_GOSHI	No assigned EC number	0.6113	0.9726	0.9431	N/A	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	256
pfam04927	62	pfam04927, SMP, Seed maturation protein	2e-16
pfam04927	62	pfam04927, SMP, Seed maturation protein	2e-10
pfam04927	62	pfam04927, SMP, Seed maturation protein	2e-05

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 71.2 bits (175), Expect = 2e-16
 Identities = 38/58 (65%), Positives = 42/58 (72%)

Query: 130 ITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSAATINAR 187
           ITIG+ LEATA   G KPV   DAAA+Q+AE RATG     PGGVAAAAQSAA +N R
Sbjct: 2   ITIGDVLEATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNER 59

Plant seed maturation protein. Length = 62

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 28/59 (47%), Positives = 36/59 (61%), Gaps = 1/59 (1%)

Query: 194 KTKLADILTDATAKLPADKQVTRKDAEGVAAAEMRNDPMLTTHPAGVAASVAAAARLNQ 252
           K  + D+L +ATA L  DK VTR+DA  V +AE R      T P GVAA+  +AA LN+
Sbjct: 1   KITIGDVL-EATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNE 58

Plant seed maturation protein. Length = 62

>gnl|CDD|203123 pfam04927, SMP, Seed maturation protein

 Score = 40.8 bits (96), Expect = 2e-05
 Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 3/62 (4%)

Query: 9  PIKYGDVF-SVEGEIAEMAVAPRDAALMQTAENAMLG--QIQKGTAASMMQSAAERNEKG 65
           I  GDV  +  G + +  V   DAA +Q+AE    G    + G  A+  QSAA  NE+ 
Sbjct: 1  KITIGDVLEATAGLVGDKPVTREDAAAVQSAEARATGGNVTRPGGVAAAAQSAAALNERA 60

Query: 66 GF 67
          G 
Sbjct: 61 GS 62

Plant seed maturation protein. Length = 62

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	256
PF04927	62	SMP: Seed maturation protein; InterPro: IPR007011	99.8
PF04927	62	SMP: Seed maturation protein; InterPro: IPR007011	99.76

>PF04927 SMP: Seed maturation protein; InterPro: IPR007011 Late embryogenesis abundant (LEA) proteins accumulate to high levels during the last stage of seed formation (when a natural desiccation of the seed tissues takes place) and during periods of water deficit in vegetative organs

Probab=99.80  E-value=6.5e-20  Score=135.90  Aligned_cols=61  Identities=61%  Similarity=0.719  Sum_probs=58.2

Q ss_pred             ccchhHHHHHhhhhhCCCCCChhhHHHHHHHHHHhcCCCCCCCCcHHHHHHHHHHHccccc
Q 046001          129 GITIGEALEATALTAGKKPVEWSDAAAIQAAEVRATGRINITPGGVAAAAQSAATINARTT  189 (256)
Q Consensus       129 ~itiGealeaaa~~~g~kPV~~~DAAaiQaAE~ratG~~~~~~GG~AA~aQSAA~~N~r~~  189 (256)
                      +|||||+|++++..+++|||+++||++||+||+|++|.+.+.|||++++|||||++|++..
T Consensus         1 ~vt~gdvl~A~a~~~~~kpVt~eDAa~iqsAE~r~~g~~~~~~GGvAa~~qsAA~~N~~~~   61 (62)
T PF04927_consen    1 KVTIGDVLEAAAGLPGDKPVTPEDAAAIQSAEARATGGAQTQPGGVAAAAQSAADKNERAG   61 (62)
T ss_pred             CccHHHHHHHHhcccccCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhhcc
Confidence            5999999999989999999999999999999999999988999999999999999999863

LEA proteins have been grouped into at least six families on the basis of sequence similarity. Although significant similarity has not been detected between the members of the different classes, a unifying and outstanding feature of these proteins is their high hydrophilicity and high percentage of glycines. Amino acid sequence analysis allows one to predict that these proteins exist primarily as random coils. This property has been confirmed in few cases with purified proteins and is supported by the fact that proteins of this type do not coagulate upon heating. LEA protein families have been identified in a wide range of different plant species to the extent that they can be considered ubiquitous in plants. Moreover, it has been shown that members of at least one of the LEA protein families, the so-called dehydrins, are present in a range of photosynthetic organisms, including lower plants, algae, and cyanobacteria. In addition similar proteins, the hydrophilins are induced in a variety of different taxons, of non-photosynthetic organsims, in response to osmotic stress. All of these proteins have a high hydrophilicity index, generally greater than 1.0 []. This conserved region identifies a set of plant seed maturation proteins described as LEA D34.

>PF04927 SMP: Seed maturation protein; InterPro: IPR007011 Late embryogenesis abundant (LEA) proteins accumulate to high levels during the last stage of seed formation (when a natural desiccation of the seed tissues takes place) and during periods of water deficit in vegetative organs

Probab=99.76  E-value=2.6e-19  Score=132.71  Aligned_cols=58  Identities=41%  Similarity=0.593  Sum_probs=56.2

Q ss_pred             CCccCceee-cccccccCcCCchhHHHHHHHHHhhhc--cccCCchHHHHHHHHHHhhhcC
Q 046001            9 PIKYGDVFS-VEGEIAEMAVAPRDAALMQTAENAMLG--QIQKGTAASMMQSAAERNEKGG   66 (256)
Q Consensus         9 pi~Ygdvf~-v~g~la~~piap~dAa~MqsAE~~v~G--~tqkgg~Aa~MqsAA~~NeraG   66 (256)
                      ||||||||+ +.+.+++|||+|+||+.|||||.+.+|  +++|||.++.|||||.+|++.|
T Consensus         1 ~vt~gdvl~A~a~~~~~kpVt~eDAa~iqsAE~r~~g~~~~~~GGvAa~~qsAA~~N~~~~   61 (62)
T PF04927_consen    1 KVTIGDVLEAAAGLPGDKPVTPEDAAAIQSAEARATGGAQTQPGGVAAAAQSAADKNERAG   61 (62)
T ss_pred             CccHHHHHHHHhcccccCCCCHHHHHHHHHHHHhhCCCCCCCCCCHHHHHHHHHHHhhhcc
Confidence            799999999 999999999999999999999999999  7999999999999999999876

LEA proteins have been grouped into at least six families on the basis of sequence similarity. Although significant similarity has not been detected between the members of the different classes, a unifying and outstanding feature of these proteins is their high hydrophilicity and high percentage of glycines. Amino acid sequence analysis allows one to predict that these proteins exist primarily as random coils. This property has been confirmed in few cases with purified proteins and is supported by the fact that proteins of this type do not coagulate upon heating. LEA protein families have been identified in a wide range of different plant species to the extent that they can be considered ubiquitous in plants. Moreover, it has been shown that members of at least one of the LEA protein families, the so-called dehydrins, are present in a range of photosynthetic organisms, including lower plants, algae, and cyanobacteria. In addition similar proteins, the hydrophilins are induced in a variety of different taxons, of non-photosynthetic organsims, in response to osmotic stress. All of these proteins have a high hydrophilicity index, generally greater than 1.0 []. This conserved region identifies a set of plant seed maturation proteins described as LEA D34.

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	256
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-05
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 41/275 (14%), Positives = 83/275 (30%), Gaps = 78/275 (28%)

Query: 3   QEQPRRP-------IKYGD-VFSVEGEIAEMAVAPRD-------AALMQTAENA------ 41
           + + R+P       I+  D +++     A+  V  R         AL++           
Sbjct: 99  KTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV-SRLQPYLKLRQALLELRPAKNVLIDG 157

Query: 42  MLGQIQKGT-AASMMQSAA--ERNEKGGF---VGHDDMADVAAGQGVSITETNLPGRRII 95
           +LG   K   A  +  S     + +   F   + + +  +       ++ E        +
Sbjct: 158 VLG-SGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPE-------TVLE--------M 201

Query: 96  TEEIGGQVVGQYSQPSSLQSLAPPSSHGEVKGGGITIGEALEATALTAGKKPVE------ 149
            +++  Q+   ++  S   S         ++         L    L   K          
Sbjct: 202 LQKLLYQIDPNWTSRSD-HSSNIKLRIHSIQ-------AELRR--LLKSKPYENCLLVLL 251

Query: 150 --WSDAAAIQAAEVRATGRINIT--PGGVAAAAQSAATINART-------TRDEDKTKLA 198
               +A A  A  +    +I +T     V     +A T +          T DE K+ L 
Sbjct: 252 NVQ-NAKAWNAFNLSC--KILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLL 308

Query: 199 DILTDATAKLPADKQVTRKD--AEGVAAAEMRNDP 231
             L      LP  ++V   +     + A  +R+  
Sbjct: 309 KYLDCRPQDLP--REVLTTNPRRLSIIAESIRDGL 341

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 41.4 bits (96), Expect = 2e-04
 Identities = 45/293 (15%), Positives = 85/293 (29%), Gaps = 91/293 (31%)

Query: 3   QEQPRRPIKYGDVFSVEGEIAEMAVAPRDAALMQTAENA------MLGQIQKGTAASMMQ 56
           Q+ P+       + S E EI  + ++         A +        L   Q+      ++
Sbjct: 39  QDMPKS------ILSKE-EIDHIIMSK-------DAVSGTLRLFWTLLSKQEEMVQKFVE 84

Query: 57  SAAERNEKGGFVGHDDMADVAAGQGVSITETNLPG--RRIITEEI-----GGQVVGQYSQ 109
                N    F+    M+ +        TE   P    R+  E+        QV  +Y+ 
Sbjct: 85  EVLRINY--KFL----MSPIK-------TEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNV 131

Query: 110 P---------SSLQSLAPPSS---HGEVKGGGITI--GEALEATALTAGKKP--VEWSDA 153
                      +L  L P  +    G V G G T    +   +  +   K    + W   
Sbjct: 132 SRLQPYLKLRQALLELRPAKNVLIDG-VLGSGKTWVALDVCLSYKVQC-KMDFKIFW--- 186

Query: 154 AAIQAAEVRATGRI---------NITPGGVAAAAQSAATINARTTRDEDKTKLADILTDA 204
             +      +   +          I P   + +  S+   N +      + +L  +L   
Sbjct: 187 --LNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSS---NIKLRIHSIQAELRRLL--- 238

Query: 205 TAKLPADKQVTR--------KDAEGVAAAEMRNDPMLTTHPAGVAASVAAAAR 249
                  K            ++A+   A  +    +LTT    V   ++AA  
Sbjct: 239 -----KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATT 286

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00