Citrus Sinensis ID: 046038

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-----
Protein Sequence
RGNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPFSSAS
Secondary Structure (PSIPRED)
ccccccEEEccEEccccccccHHHHHHHHHHHHHHHHcccccHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccEEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccEEEEcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccEEEcHHHHHHEHcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccc
Coil and Loop (DISEMBL)
rgnhvttsltGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDtlrssppenkvmkraSFVGVSITTIFYMLCGTlgyaafgdkapgnfltgfgfyepfwlvdFANMCIVVHLVGAYQVFcqpifttvenwcchkwpesgfvtkrhpitfpscgvcyVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLgaiafwpltvyfpVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDlqtykpfssas
Flexible Loop (DISEMBL)
rgnhvttsltgvaigvDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLrssppenkvmkrASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPFSSAS
Low Complexity Region (SEG)
RGNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPFSSAS
Disordered region (IsUnstruct)
******TSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTL********VMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTY*******
Disordered Region (DISOPRED)
*****TT****VAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPFSS**
Disordered Region (DISEMBL)
********LTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPFSSAS
Disordered Region (DISPRO)
**NHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPF****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
RGNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYKPFSSAS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	265	2.2.26 [Sep-21-2011]
P92934	481	Amino acid permease 6 OS=	yes	no	0.988	0.544	0.657	1e-106
O80592	475	Amino acid permease 8 OS=	no	no	0.969	0.541	0.622	3e-99
Q42400	485	Amino acid permease 1 OS=	no	no	0.969	0.529	0.618	4e-99
Q38967	493	Amino acid permease 2 OS=	no	no	0.962	0.517	0.579	4e-88
Q9FN04	466	Amino acid permease 4 OS=	no	no	0.973	0.553	0.584	7e-88
Q39134	476	Amino acid permease 3 OS=	no	no	0.981	0.546	0.590	2e-85
Q8GUM3	480	Amino acid permease 5 OS=	no	no	0.992	0.547	0.548	1e-84
Q9FF99	467	Probable amino acid perme	no	no	0.871	0.494	0.545	5e-63
Q9LRB5	441	Lysine histidine transpor	no	no	0.830	0.498	0.334	2e-23
Q9C733	453	Lysine histidine transpor	no	no	0.833	0.487	0.296	2e-22

>sp|P92934|AAP6_ARATH Amino acid permease 6 OS=Arabidopsis thaliana GN=AAP6 PE=1 SV=1

 Score =  385 bits (989), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/263 (65%), Positives = 217/263 (82%), Gaps = 1/263 (0%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPP-ENKV 60
           G HV T+LTGV +G+DV+  EKIW + QAIG+IAFAYAYS VL+EIQDTL++ PP ENK 
Sbjct: 218 GEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKA 277

Query: 61  MKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLV 120
           MKRAS VGVS TT FYMLCG +GYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CI VHL+
Sbjct: 278 MKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLI 337

Query: 121 GAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTA 180
           GAYQVFCQPIF  VE+    +WP++ F+T  + I  P CG   +N  R++WRT YV++TA
Sbjct: 338 GAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTA 397

Query: 181 VIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT 240
           V+AM+FPFFN  +GL+GA +FWPLTVYFP+EM+I++ KI KFS TW WL++LSWTCFIV+
Sbjct: 398 VVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVS 457

Query: 241 LLAAAGSIQGLVKDLQTYKPFSS 263
           L+AAAGS+QGL++ L+ +KPF +
Sbjct: 458 LVAAAGSVQGLIQSLKDFKPFQA 480

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for tryptophan, proline, and neutral and acidic amino acids. Have an affinity for aspartate in a physiological range. Involved in the uptake of amino acids diffusing out of the xylem tracheids into the xylem parenchyma.
Arabidopsis thaliana (taxid: 3702)

>sp|O80592|AAP8_ARATH Amino acid permease 8 OS=Arabidopsis thaliana GN=AAP8 PE=1 SV=1

 Score =  361 bits (927), Expect = 3e-99,   Method: Compositional matrix adjust.
 Identities = 160/257 (62%), Positives = 206/257 (80%)

Query: 7   TSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASF 66
           T LTG  IGVDVT++EK+W   QAIG+IAF+YA++ +L+EIQDTLRSSPPENKVMKRAS 
Sbjct: 217 TELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASL 276

Query: 67  VGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVF 126
           VGVS TT+FY+LCG +GYAAFG++APG+FLT FGFYEP+WL+DFAN CI +HL+GAYQV+
Sbjct: 277 VGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVY 336

Query: 127 CQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLF 186
            QP F  VE  C  KWP+S F+ K +    P  G C VN+FR++WRT YV+LT  +AM+F
Sbjct: 337 AQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIF 396

Query: 187 PFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAG 246
           PFFN+++GLLGA AFWPLTVYFPV M+I++AK++K+S  W+ L +L   C IV+ LAA G
Sbjct: 397 PFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVG 456

Query: 247 SIQGLVKDLQTYKPFSS 263
           SI GL+  +++YKPF +
Sbjct: 457 SIIGLINSVKSYKPFKN 473

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate, aspartate and neutral and acidic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q42400|AAP1_ARATH Amino acid permease 1 OS=Arabidopsis thaliana GN=AAP1 PE=1 SV=1

 Score =  360 bits (925), Expect = 4e-99,   Method: Compositional matrix adjust.
 Identities = 159/257 (61%), Positives = 208/257 (80%)

Query: 7   TSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASF 66
           TS+TG A+GVDVT+ +KIW S QA+G+IAFAYAY+ VL+EIQDTLRSSP ENK MKRAS 
Sbjct: 226 TSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASL 285

Query: 67  VGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVF 126
           VGVS TT FY+LCG +GYAAFG+ APG+FLT FGF+EPFWL+DFAN CI VHL+GAYQVF
Sbjct: 286 VGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVF 345

Query: 127 CQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLF 186
            QPIF  VE  C   +P++ F+T  + +  P  G   +++FR++WRT YV++T V+AM+F
Sbjct: 346 AQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIF 405

Query: 187 PFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAG 246
           PFFN+++GL+GA +FWPLTVYFPVEM+I++ KI+K+S  W+ L+ + + C IV+LLAAAG
Sbjct: 406 PFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAG 465

Query: 247 SIQGLVKDLQTYKPFSS 263
           SI GL+  ++TYKPF +
Sbjct: 466 SIAGLISSVKTYKPFRT 482

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, glutamate and neutral amino acids. Reduced affinities for asparagine and valine. Involved in amino acid uptake from the apoplastic cavity into the embryo cells for storage protein accumulation and in root amino acid uptake.

Arabidopsis thaliana (taxid: 3702)

>sp|Q38967|AAP2_ARATH Amino acid permease 2 OS=Arabidopsis thaliana GN=AAP2 PE=1 SV=1

 Score =  324 bits (830), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 149/257 (57%), Positives = 200/257 (77%), Gaps = 2/257 (0%)

Query: 8   SLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFV 67
           SLTG++IG  VT T+KIW + QA+G+IAFAY+YS+VL+EIQDT+RS P E+K MK+A+ +
Sbjct: 236 SLTGISIGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKI 294

Query: 68  GVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFC 127
            +++TTIFYMLCG++GYAAFGD APGN LTGFGFY PFWL+D AN  IVVHLVGAYQVF 
Sbjct: 295 SIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFA 354

Query: 128 QPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCY-VNMFRVIWRTVYVILTAVIAMLF 186
           QPIF  +E     ++P++ F++K   I  P     Y VN+FR+++R+ +V+ T VI+ML 
Sbjct: 355 QPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLM 414

Query: 187 PFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAG 246
           PFFN V+G+LGA+ FWPLTVYFPVEMYI + K+ K+S  W+ LQ+LS  C +++++A  G
Sbjct: 415 PFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVG 474

Query: 247 SIQGLVKDLQTYKPFSS 263
           SI G++ DL+ YKPF S
Sbjct: 475 SIAGVMLDLKVYKPFKS 491

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for histidine, arginine, glutamate and neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine. Has a much higher affinity for basic amino acids as compared with AAP1. May function in xylem-to-phloem transfer and in uptake of amino acids assimilated in the green silique tissue.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FN04|AAP4_ARATH Amino acid permease 4 OS=Arabidopsis thaliana GN=AAP4 PE=1 SV=1

 Score =  323 bits (828), Expect = 7e-88,   Method: Compositional matrix adjust.
 Identities = 152/260 (58%), Positives = 200/260 (76%), Gaps = 2/260 (0%)

Query: 5   VTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRA 64
           V  SLTG++IG  VT T+KIW + QA+G+IAFAY+YS+VL+EIQDT+RS P E+K MK A
Sbjct: 206 VKGSLTGISIGA-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIA 264

Query: 65  SFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQ 124
           + + +++TT FYMLCG +GYAAFGDKAPGN LTGFGFY PFWL+D AN  IV+HLVGAYQ
Sbjct: 265 TRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQ 324

Query: 125 VFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCY-VNMFRVIWRTVYVILTAVIA 183
           VF QPIF  +E     ++P+S  VTK + I  P     Y VN+FR ++R+ +V+LT VI+
Sbjct: 325 VFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVIS 384

Query: 184 MLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLA 243
           ML PFFN V+G+LGA+ FWPLTVYFPVEMYI + K+ ++S+ W+ LQ+LS  C ++TL+A
Sbjct: 385 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVA 444

Query: 244 AAGSIQGLVKDLQTYKPFSS 263
             GSI G++ DL+ YKPF +
Sbjct: 445 GVGSIAGVMLDLKVYKPFKT 464

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids, favoring small amino acids such as alanine, asparagine and glutamine. Accepts also large aromatic residues such as in phenlalanine or tyrosine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q39134|AAP3_ARATH Amino acid permease 3 OS=Arabidopsis thaliana GN=AAP3 PE=1 SV=2

 Score =  315 bits (808), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 154/261 (59%), Positives = 202/261 (77%), Gaps = 1/261 (0%)

Query: 3   NHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMK 62
             V  SLTG++IG  VT T+KIW + QA+G+IAFAY+YSI+L+EIQDT++S P E K MK
Sbjct: 215 GKVKGSLTGISIGA-VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMK 273

Query: 63  RASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGA 122
           +A+ V VS+TT+FYMLCG +GYAAFGD +PGN LTGFGFY P+WL+D AN  IV+HL+GA
Sbjct: 274 KATLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGA 333

Query: 123 YQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVI 182
           YQV+CQP+F  +E     ++P+S F+ K   I  P      +N+FR+IWRTV+VI+T VI
Sbjct: 334 YQVYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVI 393

Query: 183 AMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLL 242
           +ML PFFN V+GLLGA+ FWPLTVYFPVEMYI++ KI ++S  W+ LQV S  C +V++ 
Sbjct: 394 SMLLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIA 453

Query: 243 AAAGSIQGLVKDLQTYKPFSS 263
           AAAGSI G++ DL++YKPF S
Sbjct: 454 AAAGSIAGVLLDLKSYKPFRS 474

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for GABA, tryptophan and both neutral and basic amino acids. High affinity transport of cationic amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8GUM3|AAP5_ARATH Amino acid permease 5 OS=Arabidopsis thaliana GN=AAP5 PE=1 SV=1

 Score =  313 bits (801), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 147/268 (54%), Positives = 195/268 (72%), Gaps = 5/268 (1%)

Query: 1   RGNHVTTSLTGVAIGV-----DVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSP 55
               +  SLTGV +G       VTS++KIW + Q++GNIAFAY+YS++L+EIQDT++S P
Sbjct: 211 ENKEIKGSLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPP 270

Query: 56  PENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCI 115
            E   M++A+FV V++TT+FYMLCG +GYAAFGD APGN L   GF  P+WL+D AN+ I
Sbjct: 271 AEVNTMRKATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAI 330

Query: 116 VVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVY 175
           V+HLVGAYQV+CQP+F  VE     ++PES FVTK   I         +N+FR++WRT +
Sbjct: 331 VIHLVGAYQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFPGKPFNLNLFRLVWRTFF 390

Query: 176 VILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWT 235
           V+ T +I+ML PFFN V+GLLGAI FWPLTVYFPVEMYI++  + ++   W+ LQVLS T
Sbjct: 391 VMTTTLISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVT 450

Query: 236 CFIVTLLAAAGSIQGLVKDLQTYKPFSS 263
           C  V++ AAAGS+ G+V DL+ YKPF S
Sbjct: 451 CLFVSVAAAAGSVIGIVSDLKVYKPFQS 478

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for glutamate and both neutral and basic amino acids. Reduced affinities for asparagine and valine. High affinity transport of the cationic amino acids arginine and lysine, but not of histidine.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FF99|AAP7_ARATH Probable amino acid permease 7 OS=Arabidopsis thaliana GN=AAP7 PE=1 SV=1

 Score =  241 bits (614), Expect = 5e-63,   Method: Compositional matrix adjust.
 Identities = 127/233 (54%), Positives = 164/233 (70%), Gaps = 2/233 (0%)

Query: 22  EKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT 81
           EK+W   QA+GNIAF+Y +SI+L+EIQDTLRS P E + MK+AS V V I T F+  CG 
Sbjct: 230 EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGC 289

Query: 82  LGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHK 141
            GYAAFGD  PGN LTGFGFYEPFWLVDFAN CIV+HLVG YQV+ QPIF   E     K
Sbjct: 290 FGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKK 349

Query: 142 WPESGFVTKRHPITFP--SCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAI 199
           +PE+ F+ + +    P        +N  R+  RT+YV++T  +A++FP+FN V+G++GA+
Sbjct: 350 YPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGAL 409

Query: 200 AFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLV 252
           AFWPL VYFPVEM I + KIR ++  W+ L+  S+ C +V LL+  GSI GLV
Sbjct: 410 AFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

Amino acid-proton symporter. Stereospecific transporter with a broad specificity for neutral amino acids.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9LRB5|LHT2_ARATH Lysine histidine transporter 2 OS=Arabidopsis thaliana GN=LHT2 PE=1 SV=1

 Score =  109 bits (273), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 84/251 (33%), Positives = 128/251 (50%), Gaps = 31/251 (12%)

Query: 19  TSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSP--PENKVMKRASFVGVSITTIFY 76
           T   K+++ L A+G++AFAYA   V++EIQ T+ S+P  P    M R   V   +  I Y
Sbjct: 215 TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICY 274

Query: 77  MLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVEN 136
                LGY  FG+    N L      +P WL+  ANM +V+H++G+YQ+F  P+F  +E 
Sbjct: 275 FPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLET 332

Query: 137 WCCHKWPESGFVTKRHPITF-PSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGL 195
               K            + F PS         R I R++YV  T ++A+  PFF  ++G 
Sbjct: 333 VLVKK------------MNFNPSFK------LRFITRSLYVAFTMIVAICVPFFGGLLGF 374

Query: 196 LGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIV----TLLAAAGSIQGL 251
            G  AF P T Y P  M++   K ++F ++W      +W C IV    T+LA  G ++ +
Sbjct: 375 FGGFAFAPTTYYLPCIMWLVLKKPKRFGLSW----TANWFCIIVGVLLTILAPIGGLRTI 430

Query: 252 VKDLQTYKPFS 262
           + + +TYK FS
Sbjct: 431 IINAKTYKFFS 441

Amino acid-proton symporter. Transporter with a broad specificity for neutral and acidic amino acids. Basic amino acids are only marginally transported. Involved in import of amino acids into the tapetum cells for synthesis of compounds important for microspore structure.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9C733|LHTL1_ARATH Lysine histidine transporter-like 1 OS=Arabidopsis thaliana GN=At1g48640 PE=3 SV=2

 Score =  106 bits (264), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 119/250 (47%), Gaps = 29/250 (11%)

Query: 19  TSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSP--PENKVMKRASFVGVSITTIFY 76
           T+   + S    +G IAFAYA   V++EIQ T+ S+P  P    M R   V   +  + Y
Sbjct: 227 TTASTVLSFFTGLGGIAFAYAGHNVVLEIQATIPSTPSNPSKGPMWRGVVVAYVVVALCY 286

Query: 77  MLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVEN 136
                +GY  FG+    N L       P W +  AN+ +V+H++G+YQ+F  P+F  VE 
Sbjct: 287 FPVALVGYGVFGNAVLDNVL--MSLETPVWAIATANLFVVMHVIGSYQIFAMPVFDMVET 344

Query: 137 WCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLL 196
           +   K            + F    V      R I R VYV LT  I ++ PFF  ++   
Sbjct: 345 FLVKK------------LNFKPSTV-----LRFIVRNVYVALTMFIGIMIPFFGGLLAFF 387

Query: 197 GAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCF----IVTLLAAAGSIQGLV 252
           G  AF P + + P  M++   K ++FS++W W    +W C     ++ +L++ G ++ ++
Sbjct: 388 GGFAFAPTSYFLPCIMWLLIYKPKRFSLSW-W---TNWVCIVLGVVLMILSSIGGLRQII 443

Query: 253 KDLQTYKPFS 262
              + Y  FS
Sbjct: 444 IQSKDYSFFS 453

Amino acid transporter.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
224105769	460	amino acid permease [Populus trichocarpa	0.996	0.573	0.693	1e-109
363814354	479	uncharacterized protein LOC100777963 [Gl	0.988	0.546	0.679	1e-109
225458966	483	PREDICTED: amino acid permease 6 [Vitis	0.988	0.542	0.664	1e-108
388517251	283	unknown [Lotus japonicus]	0.988	0.925	0.675	1e-108
356515653	479	PREDICTED: amino acid permease 6-like [G	0.988	0.546	0.679	1e-108
449436914	477	PREDICTED: amino acid permease 6-like [C	0.981	0.545	0.673	1e-107
357466761	482	Amino acid permease [Medicago truncatula	0.992	0.545	0.657	1e-106
284519840	483	amino acid permease 6 [Populus tremula x	0.988	0.542	0.652	1e-106
388508848	482	unknown [Medicago truncatula]	0.992	0.545	0.653	1e-105
357436349	472	Amino acid transporter [Medicago truncat	0.981	0.550	0.676	1e-105

>gi|224105769|ref|XP_002313926.1| amino acid permease [Populus trichocarpa] gi|222850334|gb|EEE87881.1| amino acid permease [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 183/264 (69%), Positives = 221/264 (83%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           GN V TSLTG  +GVDVTSTEK W+  QAIGNIAFAY YS +LVEIQDTL+SSPPEN+VM
Sbjct: 197 GNDVKTSLTGTVVGVDVTSTEKAWNCFQAIGNIAFAYTYSSILVEIQDTLKSSPPENQVM 256

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           K+AS VGV+ TT+FYMLCGTLGYAAFG+ APGNFLTGFGFYEP+WLVDFAN+CIV+HLVG
Sbjct: 257 KKASLVGVATTTVFYMLCGTLGYAAFGNVAPGNFLTGFGFYEPYWLVDFANLCIVIHLVG 316

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQV+ QPIF  VE+ C  KWPESGF+T  HP+  P CGV +VN FR++WRT YVI ++V
Sbjct: 317 AYQVYGQPIFKLVEDSCRKKWPESGFITNEHPVDIPFCGVFHVNSFRLLWRTAYVIASSV 376

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           IAM FPFFNSV+G +GAI+FWPLT+YFPV+MYIS+A+IR+F+ TW WL +L+  C IV+L
Sbjct: 377 IAMTFPFFNSVLGFIGAISFWPLTLYFPVQMYISQARIRRFTFTWTWLTILTVACLIVSL 436

Query: 242 LAAAGSIQGLVKDLQTYKPFSSAS 265
            AAA  +QGL+  L+ ++PF S S
Sbjct: 437 AAAAACVQGLIMQLRNFEPFKSVS 460

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|363814354|ref|NP_001242816.1| uncharacterized protein LOC100777963 [Glycine max] gi|255642183|gb|ACU21356.1| unknown [Glycine max]

 Score =  399 bits (1025), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 220/262 (83%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           G  V T+LTGV +GVDVT +EK+W + QAIG+IAFAYAYS VL+EIQDTL+SSPPENKVM
Sbjct: 216 GEPVRTTLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVM 275

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           KRAS +G+  TT+FY+LCG LGYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CI VHLVG
Sbjct: 276 KRASLIGILTTTLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVG 335

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQVFCQPIF  VENW   +WP S FV   H + FP CG   VN FRV+WRT YVI+TA+
Sbjct: 336 AYQVFCQPIFGFVENWGRERWPNSQFVNGEHALNFPLCGTFPVNFFRVVWRTTYVIITAL 395

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           IAM+FPFFN  +GL+G+++FWPLTVYFP+EMYI ++K+++FS TW WL++LSW C IV++
Sbjct: 396 IAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTWTWLKILSWACLIVSI 455

Query: 242 LAAAGSIQGLVKDLQTYKPFSS 263
           ++AAGSIQGL +DL+ Y+PF +
Sbjct: 456 ISAAGSIQGLAQDLKKYQPFKA 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225458966|ref|XP_002285557.1| PREDICTED: amino acid permease 6 [Vitis vinifera] gi|302142129|emb|CBI19332.3| unnamed protein product [Vitis vinifera]

 Score =  396 bits (1018), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 174/262 (66%), Positives = 223/262 (85%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           G H  T+LTG  +GVD++S+EK+W + ++IGNIAFAYAYS VLVEIQDTL+SSPPENKVM
Sbjct: 220 GAHARTTLTGRTVGVDLSSSEKVWRTFESIGNIAFAYAYSTVLVEIQDTLKSSPPENKVM 279

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           K+A+F G+S T++FY+LCG +GYAAFG+ APGNFLTGFGF+EPFWL+D AN+ I +HL+G
Sbjct: 280 KKATFAGISTTSLFYVLCGCVGYAAFGNDAPGNFLTGFGFFEPFWLIDLANVFIAIHLIG 339

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQVFCQP+F  VE WC  +WPES F+T  H I  P  G+ Y+N+FR++WRTVYVI+TAV
Sbjct: 340 AYQVFCQPVFGFVEKWCNKRWPESKFITTEHCIDVPLYGIYYLNLFRLVWRTVYVIVTAV 399

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           +AMLFPFFN V+G LGA +FWPLTVYFP+EM+I+R KI KFS TW WL++LSWTC +V++
Sbjct: 400 LAMLFPFFNEVMGFLGAASFWPLTVYFPIEMHIARTKIPKFSFTWTWLKILSWTCLMVSV 459

Query: 242 LAAAGSIQGLVKDLQTYKPFSS 263
           +AAAGSIQGL+K+++ YKPF +
Sbjct: 460 VAAAGSIQGLIKEIEKYKPFQT 481

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388517251|gb|AFK46687.1| unknown [Lotus japonicus]

 Score =  395 bits (1016), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 177/262 (67%), Positives = 216/262 (82%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           G HV TSLTGV  GVDVT  EK+W + QAIG+IAFAYAYS VL+EIQDTL+SSPPENKVM
Sbjct: 20  GGHVRTSLTGVEAGVDVTGPEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVM 79

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           KRAS +G+  TT+FYMLCG LGYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CI +HL+G
Sbjct: 80  KRASLIGILTTTMFYMLCGILGYAAFGNDAPGNFLTGFGFYEPFWLMDFANICIAIHLIG 139

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQVFCQPIF  VE W   KW  S F+   H +  P CG  YVN FRV+WRT YVI+TA+
Sbjct: 140 AYQVFCQPIFGFVEKWSQGKWTNSQFINGEHALNIPFCGTFYVNFFRVVWRTTYVIITAL 199

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           IAM+FPFFN  +GL+G+++FWPLTVYFP+EMYI ++K++K+S TW WL++LSW C IV++
Sbjct: 200 IAMVFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMKKYSFTWTWLKILSWACLIVSI 259

Query: 242 LAAAGSIQGLVKDLQTYKPFSS 263
           +AAAGSIQGL + L+ Y+PF +
Sbjct: 260 IAAAGSIQGLSQSLKKYQPFKA 281

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356515653|ref|XP_003526513.1| PREDICTED: amino acid permease 6-like [Glycine max]

 Score =  395 bits (1015), Expect = e-108,   Method: Compositional matrix adjust.
 Identities = 178/262 (67%), Positives = 219/262 (83%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           G  V T+LTGV +GVDVT +EK+W + QAIG+IAFAYAYS VL+EIQDTL+SSPPENKVM
Sbjct: 216 GEPVRTTLTGVQVGVDVTGSEKVWRTFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENKVM 275

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           KRAS +G+  TT+FY+LCG LGYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CI VHLVG
Sbjct: 276 KRASLIGILTTTLFYVLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANICIAVHLVG 335

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQVFCQPIF  VENW   +WP S FV   H + FP  G   VN FRV+WRT YVI+TA+
Sbjct: 336 AYQVFCQPIFGFVENWGKERWPNSHFVNGEHALKFPLFGTFPVNFFRVVWRTTYVIITAL 395

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           IAM+FPFFN  +GL+G+++FWPLTVYFP+EMYI ++K++KFS TW WL++LSW C IV++
Sbjct: 396 IAMMFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQKFSFTWTWLKILSWACLIVSI 455

Query: 242 LAAAGSIQGLVKDLQTYKPFSS 263
           ++AAGSIQGL +DL+ Y+PF +
Sbjct: 456 ISAAGSIQGLAQDLKKYQPFKA 477

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449436914|ref|XP_004136237.1| PREDICTED: amino acid permease 6-like [Cucumis sativus] gi|449522221|ref|XP_004168126.1| PREDICTED: amino acid permease 6-like [Cucumis sativus]

 Score =  393 bits (1010), Expect = e-107,   Method: Compositional matrix adjust.
 Identities = 175/260 (67%), Positives = 217/260 (83%)

Query: 4   HVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKR 63
           H  T+LTG  IGVDVT  EKI+ + QA+G+IAFAY+YS+VLVEIQDTLRSSP ENK MK+
Sbjct: 218 HARTTLTGATIGVDVTGQEKIFKAFQALGDIAFAYSYSMVLVEIQDTLRSSPAENKAMKK 277

Query: 64  ASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAY 123
           ASFVG++ T++FY+LCG +GYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CIVVHL+GAY
Sbjct: 278 ASFVGITTTSLFYILCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIVVHLIGAY 337

Query: 124 QVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIA 183
           QVFCQP +  VE WC  KWPES F+T  H I  P  G   +N FR+IWRT+YVILTAV+A
Sbjct: 338 QVFCQPFYGFVEKWCNKKWPESTFITTEHTINLPFNGEYQLNYFRLIWRTIYVILTAVVA 397

Query: 184 MLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLA 243
           M+FPFFN  +GL+GA +FWPLTVYFPVEMYI+R K+ +FS TW+WL+ LSW C +++L+A
Sbjct: 398 MIFPFFNDFLGLIGAASFWPLTVYFPVEMYIARTKLPRFSSTWIWLKTLSWACLVISLIA 457

Query: 244 AAGSIQGLVKDLQTYKPFSS 263
           A GS+QGL +D++TY+PF S
Sbjct: 458 AVGSLQGLAQDVKTYRPFKS 477

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357466761|ref|XP_003603665.1| Amino acid permease [Medicago truncatula] gi|355492713|gb|AES73916.1| Amino acid permease [Medicago truncatula]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 173/263 (65%), Positives = 215/263 (81%)

Query: 1   RGNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKV 60
           RG  V TSLTGV +GVDVT TEK+W   QAIG+IAFAYAYS VL+EIQDTL+SSPPEN+V
Sbjct: 218 RGPAVRTSLTGVQVGVDVTGTEKVWRMFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENQV 277

Query: 61  MKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLV 120
           MKRAS +G+  TT+FYMLCG LGYAAFG+ APGNFLTGFGFYEPFWL+D AN+ I VHL+
Sbjct: 278 MKRASLIGILTTTMFYMLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDLANIFIAVHLI 337

Query: 121 GAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTA 180
           GAYQVFCQPIF  VE+    KW  S FV   H +  P CG  +VN FRV+WRT YV++TA
Sbjct: 338 GAYQVFCQPIFGFVESKSKEKWSNSQFVNGEHAVNIPLCGTLHVNFFRVVWRTAYVVITA 397

Query: 181 VIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT 240
           +IAM+FPFFN  +GL+G+++FWPLTVYFP+EMYI ++K+++FS TW W+++LSW C IV+
Sbjct: 398 LIAMIFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTWTWMKILSWACLIVS 457

Query: 241 LLAAAGSIQGLVKDLQTYKPFSS 263
           +++AAGSIQGL  DL+ Y+PF +
Sbjct: 458 IISAAGSIQGLAHDLKKYQPFKA 480

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|284519840|gb|ADB92670.1| amino acid permease 6 [Populus tremula x Populus alba]

 Score =  389 bits (998), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 171/262 (65%), Positives = 219/262 (83%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           G H  TSLTGV +GVDV++ +K+W + QA+G+IAFAYAYS VL+EIQDTL+SSPPENK M
Sbjct: 220 GAHARTSLTGVTVGVDVSAEQKVWRTFQALGDIAFAYAYSTVLIEIQDTLKSSPPENKAM 279

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           KRASFVG+  TT FY+LCG LGYAAFG+ APGNFLTGFGFYEPFWL+D AN CI +HL+G
Sbjct: 280 KRASFVGILTTTTFYILCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDLANACIAIHLIG 339

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQVFCQPIF+ VE+ C  +WP+S F+T+ H I  P  GV Y+N+FR++WRT+YVI+TAV
Sbjct: 340 AYQVFCQPIFSFVESRCHRRWPDSKFMTREHAINIPFYGVYYLNLFRLVWRTLYVIVTAV 399

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           +AM+ PFFN  + LLGAI+FWPLTVYFP+EMY++R+K+ KFS  W  L++LSW C  V+L
Sbjct: 400 LAMILPFFNDFLALLGAISFWPLTVYFPIEMYMARSKMPKFSFRWTSLKMLSWACLAVSL 459

Query: 242 LAAAGSIQGLVKDLQTYKPFSS 263
           ++AAGS++GL++ L+TYKPF +
Sbjct: 460 VSAAGSVEGLIQALKTYKPFKA 481

Source: Populus tremula x Populus alba

Species: Populus tremula x Populus alba

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508848|gb|AFK42490.1| unknown [Medicago truncatula]

 Score =  387 bits (993), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 172/263 (65%), Positives = 214/263 (81%)

Query: 1   RGNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKV 60
           RG  V TSLTGV +GVDVT TEK+W   QAIG+IAFAYAYS VL+EIQDTL+SSPPEN+V
Sbjct: 218 RGPAVRTSLTGVQVGVDVTGTEKVWRMFQAIGDIAFAYAYSNVLIEIQDTLKSSPPENQV 277

Query: 61  MKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLV 120
           MKRAS +G+  TT+FYMLCG LGYAAFG+ APGNFLTGFGFYEPFWL+D AN+ I VHL+
Sbjct: 278 MKRASLIGILTTTMFYMLCGCLGYAAFGNDAPGNFLTGFGFYEPFWLIDLANIFIAVHLI 337

Query: 121 GAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTA 180
           GAYQVFCQPIF  VE+    KW  S FV   H +  P CG  +VN FR +WRT YV++TA
Sbjct: 338 GAYQVFCQPIFGFVESKSKEKWSNSQFVNGEHAVNIPLCGTLHVNFFRAVWRTAYVVITA 397

Query: 181 VIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT 240
           +IAM+FPFFN  +GL+G+++FWPLTVYFP+EMYI ++K+++FS TW W+++LSW C IV+
Sbjct: 398 LIAMIFPFFNDFLGLIGSLSFWPLTVYFPIEMYIKQSKMQRFSFTWTWMKILSWACLIVS 457

Query: 241 LLAAAGSIQGLVKDLQTYKPFSS 263
           +++AAGSIQGL  DL+ Y+PF +
Sbjct: 458 IISAAGSIQGLAHDLKKYQPFKA 480

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357436349|ref|XP_003588450.1| Amino acid transporter [Medicago truncatula] gi|355477498|gb|AES58701.1| Amino acid transporter [Medicago truncatula]

 Score =  386 bits (992), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 176/260 (67%), Positives = 215/260 (82%)

Query: 2   GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVM 61
           GNHVTTSLTGV IGVDVT+TEK+W   QAIG+IAFAYA+S VL+EIQDTL+SSPPEN+VM
Sbjct: 209 GNHVTTSLTGVQIGVDVTATEKVWRMFQAIGDIAFAYAFSNVLIEIQDTLKSSPPENRVM 268

Query: 62  KRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVG 121
           KRAS +G+  TT+FY+LCGTLGYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CI VHL+G
Sbjct: 269 KRASLIGILTTTLFYVLCGTLGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLIG 328

Query: 122 AYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV 181
           AYQVF QPIF  VE     KWP+S FV   H +  P  G   VN FRVIWR+ YVI+TA+
Sbjct: 329 AYQVFVQPIFGFVEGQSKQKWPDSKFVNGEHAMNIPLYGSYNVNYFRVIWRSCYVIITAI 388

Query: 182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTL 241
           IAMLFPFFN  +GL+G+++F+PLTVYFP+EMYI +  + K+S TW WL++LSW C ++++
Sbjct: 389 IAMLFPFFNDFLGLIGSLSFYPLTVYFPIEMYIKKTNMPKYSFTWTWLKILSWLCLVISI 448

Query: 242 LAAAGSIQGLVKDLQTYKPF 261
           ++AAGSIQGL   L+TYKPF
Sbjct: 449 ISAAGSIQGLATSLKTYKPF 468

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	265
TAIR|locus:2168912	481	AAP6 "amino acid permease 6" [	0.988	0.544	0.657	2.1e-100
TAIR|locus:2201871	475	AAP8 "amino acid permease 8" [	0.969	0.541	0.622	3e-92
TAIR|locus:2016600	485	AAP1 "amino acid permease 1" [	0.962	0.525	0.623	3.9e-92
TAIR|locus:2031402	476	AAP3 "amino acid permease 3" [	0.973	0.542	0.594	3e-85
TAIR|locus:2163981	466	AAP4 "amino acid permease 4" [	0.973	0.553	0.584	2.4e-83
TAIR|locus:2184707	493	AAP2 "amino acid permease 2" [	0.962	0.517	0.579	3.1e-83
TAIR|locus:2205876	480	AAP5 "amino acid permease 5" [	0.958	0.529	0.570	4.7e-80
TAIR|locus:2172868	467	AAP7 "amino acid permease 7" [	0.871	0.494	0.549	2.4e-67
UNIPROTKB|Q85V22	441	ht "Histidine amino acid trans	0.433	0.260	0.378	2.4e-33
TAIR|locus:2024071	441	LHT2 "lysine histidine transpo	0.433	0.260	0.378	1.7e-32

TAIR|locus:2168912 AAP6 "amino acid permease 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 996 (355.7 bits), Expect = 2.1e-100, P = 2.1e-100
 Identities = 173/263 (65%), Positives = 217/263 (82%)

Query:     2 GNHVTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPP-ENKV 60
             G HV T+LTGV +G+DV+  EKIW + QAIG+IAFAYAYS VL+EIQDTL++ PP ENK 
Sbjct:   218 GEHVRTTLTGVTVGIDVSGAEKIWRTFQAIGDIAFAYAYSTVLIEIQDTLKAGPPSENKA 277

Query:    61 MKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLV 120
             MKRAS VGVS TT FYMLCG +GYAAFG+ APGNFLTGFGFYEPFWL+DFAN+CI VHL+
Sbjct:   278 MKRASLVGVSTTTFFYMLCGCVGYAAFGNDAPGNFLTGFGFYEPFWLIDFANVCIAVHLI 337

Query:   121 GAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTA 180
             GAYQVFCQPIF  VE+    +WP++ F+T  + I  P CG   +N  R++WRT YV++TA
Sbjct:   338 GAYQVFCQPIFQFVESQSAKRWPDNKFITGEYKIHVPCCGDFSINFLRLVWRTSYVVVTA 397

Query:   181 VIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT 240
             V+AM+FPFFN  +GL+GA +FWPLTVYFP+EM+I++ KI KFS TW WL++LSWTCFIV+
Sbjct:   398 VVAMIFPFFNDFLGLIGAASFWPLTVYFPIEMHIAQKKIPKFSFTWTWLKILSWTCFIVS 457

Query:   241 LLAAAGSIQGLVKDLQTYKPFSS 263
             L+AAAGS+QGL++ L+ +KPF +
Sbjct:   458 LVAAAGSVQGLIQSLKDFKPFQA 480

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015810 "aspartate transport" evidence=IDA

GO:0015827 "tryptophan transport" evidence=IDA

TAIR|locus:2201871 AAP8 "amino acid permease 8" [Arabidopsis thaliana (taxid:3702)]

 Score = 919 (328.6 bits), Expect = 3.0e-92, P = 3.0e-92
 Identities = 160/257 (62%), Positives = 206/257 (80%)

Query:     7 TSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASF 66
             T LTG  IGVDVT++EK+W   QAIG+IAF+YA++ +L+EIQDTLRSSPPENKVMKRAS 
Sbjct:   217 TELTGTVIGVDVTASEKVWKLFQAIGDIAFSYAFTTILIEIQDTLRSSPPENKVMKRASL 276

Query:    67 VGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVF 126
             VGVS TT+FY+LCG +GYAAFG++APG+FLT FGFYEP+WL+DFAN CI +HL+GAYQV+
Sbjct:   277 VGVSTTTVFYILCGCIGYAAFGNQAPGDFLTDFGFYEPYWLIDFANACIALHLIGAYQVY 336

Query:   127 CQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLF 186
              QP F  VE  C  KWP+S F+ K +    P  G C VN+FR++WRT YV+LT  +AM+F
Sbjct:   337 AQPFFQFVEENCNKKWPQSNFINKEYSSKVPLLGKCRVNLFRLVWRTCYVVLTTFVAMIF 396

Query:   187 PFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAG 246
             PFFN+++GLLGA AFWPLTVYFPV M+I++AK++K+S  W+ L +L   C IV+ LAA G
Sbjct:   397 PFFNAILGLLGAFAFWPLTVYFPVAMHIAQAKVKKYSRRWLALNLLVLVCLIVSALAAVG 456

Query:   247 SIQGLVKDLQTYKPFSS 263
             SI GL+  +++YKPF +
Sbjct:   457 SIIGLINSVKSYKPFKN 473

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0006865 "amino acid transport" evidence=IGI

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2016600 AAP1 "amino acid permease 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 918 (328.2 bits), Expect = 3.9e-92, P = 3.9e-92
 Identities = 159/255 (62%), Positives = 207/255 (81%)

Query:     7 TSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASF 66
             TS+TG A+GVDVT+ +KIW S QA+G+IAFAYAY+ VL+EIQDTLRSSP ENK MKRAS 
Sbjct:   226 TSMTGTAVGVDVTAAQKIWRSFQAVGDIAFAYAYATVLIEIQDTLRSSPAENKAMKRASL 285

Query:    67 VGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVF 126
             VGVS TT FY+LCG +GYAAFG+ APG+FLT FGF+EPFWL+DFAN CI VHL+GAYQVF
Sbjct:   286 VGVSTTTFFYILCGCIGYAAFGNNAPGDFLTDFGFFEPFWLIDFANACIAVHLIGAYQVF 345

Query:   127 CQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLF 186
              QPIF  VE  C   +P++ F+T  + +  P  G   +++FR++WRT YV++T V+AM+F
Sbjct:   346 AQPIFQFVEKKCNRNYPDNKFITSEYSVNVPFLGKFNISLFRLVWRTAYVVITTVVAMIF 405

Query:   187 PFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAG 246
             PFFN+++GL+GA +FWPLTVYFPVEM+I++ KI+K+S  W+ L+ + + C IV+LLAAAG
Sbjct:   406 PFFNAILGLIGAASFWPLTVYFPVEMHIAQTKIKKYSARWIALKTMCYVCLIVSLLAAAG 465

Query:   247 SIQGLVKDLQTYKPF 261
             SI GL+  ++TYKPF
Sbjct:   466 SIAGLISSVKTYKPF 480

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IMP

GO:0009624 "response to nematode" evidence=IEP

GO:0043090 "amino acid import" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

GO:0015804 "neutral amino acid transport" evidence=IGI

TAIR|locus:2031402 AAP3 "amino acid permease 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 853 (305.3 bits), Expect = 3.0e-85, P = 3.0e-85
 Identities = 154/259 (59%), Positives = 202/259 (77%)

Query:     5 VTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRA 64
             V  SLTG++IG  VT T+KIW + QA+G+IAFAY+YSI+L+EIQDT++S P E K MK+A
Sbjct:   217 VKGSLTGISIGA-VTETQKIWRTFQALGDIAFAYSYSIILIEIQDTVKSPPSEEKTMKKA 275

Query:    65 SFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQ 124
             + V VS+TT+FYMLCG +GYAAFGD +PGN LTGFGFY P+WL+D AN  IV+HL+GAYQ
Sbjct:   276 TLVSVSVTTMFYMLCGCMGYAAFGDLSPGNLLTGFGFYNPYWLLDIANAAIVIHLIGAYQ 335

Query:   125 VFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAM 184
             V+CQP+F  +E     ++P+S F+ K   I  P      +N+FR+IWRTV+VI+T VI+M
Sbjct:   336 VYCQPLFAFIEKQASIQFPDSEFIAKDIKIPIPGFKPLRLNVFRLIWRTVFVIITTVISM 395

Query:   185 LFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAA 244
             L PFFN V+GLLGA+ FWPLTVYFPVEMYI++ KI ++S  W+ LQV S  C +V++ AA
Sbjct:   396 LLPFFNDVVGLLGALGFWPLTVYFPVEMYIAQKKIPRWSTRWVCLQVFSLGCLVVSIAAA 455

Query:   245 AGSIQGLVKDLQTYKPFSS 263
             AGSI G++ DL++YKPF S
Sbjct:   456 AGSIAGVLLDLKSYKPFRS 474

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015802 "basic amino acid transport" evidence=RCA;IDA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006865 "amino acid transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015696 "ammonium transport" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

TAIR|locus:2163981 AAP4 "amino acid permease 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 835 (299.0 bits), Expect = 2.4e-83, P = 2.4e-83
 Identities = 152/260 (58%), Positives = 200/260 (76%)

Query:     5 VTTSLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRA 64
             V  SLTG++IG  VT T+KIW + QA+G+IAFAY+YS+VL+EIQDT+RS P E+K MK A
Sbjct:   206 VKGSLTGISIGA-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKIA 264

Query:    65 SFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQ 124
             + + +++TT FYMLCG +GYAAFGDKAPGN LTGFGFY PFWL+D AN  IV+HLVGAYQ
Sbjct:   265 TRISIAVTTTFYMLCGCMGYAAFGDKAPGNLLTGFGFYNPFWLLDVANAAIVIHLVGAYQ 324

Query:   125 VFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCY-VNMFRVIWRTVYVILTAVIA 183
             VF QPIF  +E     ++P+S  VTK + I  P     Y VN+FR ++R+ +V+LT VI+
Sbjct:   325 VFAQPIFAFIEKQAAARFPDSDLVTKEYEIRIPGFRSPYKVNVFRAVYRSGFVVLTTVIS 384

Query:   184 MLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLA 243
             ML PFFN V+G+LGA+ FWPLTVYFPVEMYI + K+ ++S+ W+ LQ+LS  C ++TL+A
Sbjct:   385 MLMPFFNDVVGILGALGFWPLTVYFPVEMYIRQRKVERWSMKWVCLQMLSCGCLMITLVA 444

Query:   244 AAGSIQGLVKDLQTYKPFSS 263
               GSI G++ DL+ YKPF +
Sbjct:   445 GVGSIAGVMLDLKVYKPFKT 464

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0006865 "amino acid transport" evidence=RCA;TAS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IDA

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IDA

GO:0015399 "primary active transmembrane transporter activity" evidence=IDA

TAIR|locus:2184707 AAP2 "amino acid permease 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 834 (298.6 bits), Expect = 3.1e-83, P = 3.1e-83
 Identities = 149/257 (57%), Positives = 200/257 (77%)

Query:     8 SLTGVAIGVDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFV 67
             SLTG++IG  VT T+KIW + QA+G+IAFAY+YS+VL+EIQDT+RS P E+K MK+A+ +
Sbjct:   236 SLTGISIGT-VTQTQKIWRTFQALGDIAFAYSYSVVLIEIQDTVRSPPAESKTMKKATKI 294

Query:    68 GVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFC 127
              +++TTIFYMLCG++GYAAFGD APGN LTGFGFY PFWL+D AN  IVVHLVGAYQVF 
Sbjct:   295 SIAVTTIFYMLCGSMGYAAFGDAAPGNLLTGFGFYNPFWLLDIANAAIVVHLVGAYQVFA 354

Query:   128 QPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCY-VNMFRVIWRTVYVILTAVIAMLF 186
             QPIF  +E     ++P++ F++K   I  P     Y VN+FR+++R+ +V+ T VI+ML 
Sbjct:   355 QPIFAFIEKSVAERYPDNDFLSKEFEIRIPGFKSPYKVNVFRMVYRSGFVVTTTVISMLM 414

Query:   187 PFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAG 246
             PFFN V+G+LGA+ FWPLTVYFPVEMYI + K+ K+S  W+ LQ+LS  C +++++A  G
Sbjct:   415 PFFNDVVGILGALGFWPLTVYFPVEMYIKQRKVEKWSTRWVCLQMLSVACLVISVVAGVG 474

Query:   247 SIQGLVKDLQTYKPFSS 263
             SI G++ DL+ YKPF S
Sbjct:   475 SIAGVMLDLKVYKPFKS 491

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IGI;ISS

GO:0016020 "membrane" evidence=ISS

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006833 "water transport" evidence=RCA

GO:0009651 "response to salt stress" evidence=RCA

GO:0009750 "response to fructose stimulus" evidence=RCA

GO:0009963 "positive regulation of flavonoid biosynthetic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0030003 "cellular cation homeostasis" evidence=RCA

GO:0070838 "divalent metal ion transport" evidence=RCA

GO:0015800 "acidic amino acid transport" evidence=IDA

GO:0015804 "neutral amino acid transport" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=TAS

TAIR|locus:2205876 AAP5 "amino acid permease 5" [Arabidopsis thaliana (taxid:3702)]

 Score = 804 (288.1 bits), Expect = 4.7e-80, P = 4.7e-80
 Identities = 150/263 (57%), Positives = 198/263 (75%)

Query:     8 SLTGVAIGV-----DVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMK 62
             SLTGV +G       VTS++KIW + Q++GNIAFAY+YS++L+EIQDT++S P E   M+
Sbjct:   218 SLTGVTVGTVTLSGTVTSSQKIWRTFQSLGNIAFAYSYSMILIEIQDTVKSPPAEVNTMR 277

Query:    63 RASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGA 122
             +A+FV V++TT+FYMLCG +GYAAFGD APGN L   GF  P+WL+D AN+ IV+HLVGA
Sbjct:   278 KATFVSVAVTTVFYMLCGCVGYAAFGDNAPGNLLAHGGFRNPYWLLDIANLAIVIHLVGA 337

Query:   123 YQVFCQPIFTTVENWCCHKWPESGFVTKRHPIT-FPSCGVCY-VNMFRVIWRTVYVILTA 180
             YQV+CQP+F  VE     ++PES FVTK   I  FP  G  + +N+FR++WRT +V+ T 
Sbjct:   338 YQVYCQPLFAFVEKEASRRFPESEFVTKEIKIQLFP--GKPFNLNLFRLVWRTFFVMTTT 395

Query:   181 VIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT 240
             +I+ML PFFN V+GLLGAI FWPLTVYFPVEMYI++  + ++   W+ LQVLS TC  V+
Sbjct:   396 LISMLMPFFNDVVGLLGAIGFWPLTVYFPVEMYIAQKNVPRWGTKWVCLQVLSVTCLFVS 455

Query:   241 LLAAAGSIQGLVKDLQTYKPFSS 263
             + AAAGS+ G+V DL+ YKPF S
Sbjct:   456 VAAAAGSVIGIVSDLKVYKPFQS 478

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;TAS

GO:0016020 "membrane" evidence=ISS

GO:0015174 "basic amino acid transmembrane transporter activity" evidence=IDA

GO:0015802 "basic amino acid transport" evidence=TAS

GO:0015809 "arginine transport" evidence=IMP

GO:0006865 "amino acid transport" evidence=RCA

TAIR|locus:2172868 AAP7 "amino acid permease 7" [Arabidopsis thaliana (taxid:3702)]

 Score = 684 (245.8 bits), Expect = 2.4e-67, P = 2.4e-67
 Identities = 128/233 (54%), Positives = 165/233 (70%)

Query:    22 EKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT 81
             EK+W   QA+GNIAF+Y +SI+L+EIQDTLRS P E + MK+AS V V I T F+  CG 
Sbjct:   230 EKVWIVFQALGNIAFSYPFSIILLEIQDTLRSPPAEKQTMKKASTVAVFIQTFFFFCCGC 289

Query:    82 LGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHK 141
              GYAAFGD  PGN LTGFGFYEPFWLVDFAN CIV+HLVG YQV+ QPIF   E     K
Sbjct:   290 FGYAAFGDSTPGNLLTGFGFYEPFWLVDFANACIVLHLVGGYQVYSQPIFAAAERSLTKK 349

Query:   142 WPESGFVTKRHPITFPSC-G-VCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAI 199
             +PE+ F+ + +    P   G    +N  R+  RT+YV++T  +A++FP+FN V+G++GA+
Sbjct:   350 YPENKFIARFYGFKLPLLRGETVRLNPMRMCLRTMYVLITTGVAVMFPYFNEVLGVVGAL 409

Query:   200 AFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLV 252
             AFWPL VYFPVEM I + KIR ++  W+ L+  S+ C +V LL+  GSI GLV
Sbjct:   410 AFWPLAVYFPVEMCILQKKIRSWTRPWLLLRGFSFVCLLVCLLSLVGSIYGLV 462

GO:0005886 "plasma membrane" evidence=ISM

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS;IDA

GO:0006865 "amino acid transport" evidence=ISS

GO:0016020 "membrane" evidence=ISS

UNIPROTKB|Q85V22 ht "Histidine amino acid transporter" [Oryza sativa Indica Group (taxid:39946)]

 Score = 219 (82.2 bits), Expect = 2.4e-33, Sum P(2) = 2.4e-33
 Identities = 45/119 (37%), Positives = 68/119 (57%)

Query:    19 TSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSP--PENKVMKRASFVGVSITTIFY 76
             TST K++    A+G++AFAYA   V++EIQ T+ S+P  P  K M +   V   I  + Y
Sbjct:   215 TSTGKVFGFFSALGDVAFAYAGHNVVLEIQATIPSTPEKPSKKPMWKGVVVAYIIVALCY 274

Query:    77 MLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVE 135
                  +GY AFG+    N L       P WL+  ANM +V+H++G+YQ++  P+F  +E
Sbjct:   275 FPVALVGYWAFGNHVDDNILITLS--RPKWLIALANMMVVIHVIGSYQIYAMPVFDMIE 331

GO:0009536 "plastid" evidence=IC

TAIR|locus:2024071 LHT2 "lysine histidine transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 215 (80.7 bits), Expect = 1.7e-32, Sum P(2) = 1.7e-32
 Identities = 45/119 (37%), Positives = 67/119 (56%)

Query:    19 TSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSP--PENKVMKRASFVGVSITTIFY 76
             T   K+++ L A+G++AFAYA   V++EIQ T+ S+P  P    M R   V   +  I Y
Sbjct:   215 TDVGKVFNFLNALGDVAFAYAGHNVVLEIQATIPSTPEMPSKVPMWRGVIVAYIVVAICY 274

Query:    77 MLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVE 135
                  LGY  FG+    N L      +P WL+  ANM +V+H++G+YQ+F  P+F  +E
Sbjct:   275 FPVAFLGYYIFGNSVDDNIL--ITLEKPIWLIAMANMFVVIHVIGSYQIFAMPVFDMLE 331

GO:0005886 "plasma membrane" evidence=ISM

GO:0006865 "amino acid transport" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0015172 "acidic amino acid transmembrane transporter activity" evidence=IGI

GO:0015175 "neutral amino acid transmembrane transporter activity" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: PtrAAP1 amino acid permease (460 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	265
pfam01490	406	pfam01490, Aa_trans, Transmembrane amino acid tran	1e-52

>gnl|CDD|216528 pfam01490, Aa_trans, Transmembrane amino acid transporter protein

 Score =  175 bits (447), Expect = 1e-52
 Identities = 72/238 (30%), Positives = 113/238 (47%), Gaps = 17/238 (7%)

Query: 16  VDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIF 75
           +   +  K+     AIG I FA+    VL+ IQ+T++S P + K M +     + I T+ 
Sbjct: 184 LGAKTNIKLARLFLAIGIIVFAFEGHAVLLPIQNTMKS-PSKFKAMTKVLLTAIIIVTVL 242

Query: 76  YMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVE 135
           Y+L G +GY AFG+   GN L         WL+D AN+ +V+HL+ +Y +   PI   VE
Sbjct: 243 YILVGLVGYLAFGNNVKGNILLNLPK--SDWLIDIANLLLVLHLLLSYPLQAFPIRQIVE 300

Query: 136 NWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGL 195
           N    K        K               + RV+ R+  V++T +IA+  PF    + L
Sbjct: 301 NLLFRKGASGKHNPKS-------------KLLRVVIRSGLVVITYLIAISVPFLGDFLSL 347

Query: 196 LGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQV-LSWTCFIVTLLAAAGSIQGLV 252
           +GA +  PLT   P   ++   K +K S+  +W    L   C ++ LL  A  + GL+
Sbjct: 348 VGATSGAPLTFILPPLFHLKLKKTKKKSLEKLWKPDILDVICIVIGLLLMAYGVAGLI 405

This transmembrane region is found in many amino acid transporters including UNC-47 and MTR. UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT). UNC-47 is predicted to have 10 transmembrane domains. MTR is a N system amino acid transporter system protein involved in methyltryptophan resistance. Other members of this family include proline transporters and amino acid permeases. Length = 406

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	265
KOG1304	449	consensus Amino acid transporters [Amino acid tran	100.0
PTZ00206	467	amino acid transporter; Provisional	100.0
PLN03074	473	auxin influx permease; Provisional	100.0
KOG1303	437	consensus Amino acid transporters [Amino acid tran	100.0
PF01490	409	Aa_trans: Transmembrane amino acid transporter pro	99.97
KOG1305	411	consensus Amino acid transporter protein [Amino ac	99.95
KOG4303	524	consensus Vesicular inhibitory amino acid transpor	99.95
COG0814	415	SdaC Amino acid permeases [Amino acid transport an	99.57
TIGR00837	381	araaP aromatic amino acid transport protein. aroma	98.99
PF03222	394	Trp_Tyr_perm: Tryptophan/tyrosine permease family;	98.8
PRK15132	403	tyrosine transporter TyrP; Provisional	98.62
PRK10483	414	tryptophan permease; Provisional	98.48
PRK13629	443	threonine/serine transporter TdcC; Provisional	98.32
TIGR00814	397	stp serine transporter. The HAAAP family includes	98.32
PRK09664	415	tryptophan permease TnaB; Provisional	98.32
PRK11021	410	putative transporter; Provisional	97.88
TIGR03813	474	put_Glu_GABA_T putative glutamate/gamma-aminobutyr	97.67
PRK10655	438	potE putrescine transporter; Provisional	97.65
PRK10644	445	arginine:agmatin antiporter; Provisional	97.59
PRK10746	461	putative transport protein YifK; Provisional	97.54
PRK10435	435	cadB lysine/cadaverine antiporter; Provisional	97.5
PRK15049	499	L-asparagine permease; Provisional	97.48
PRK10249	458	phenylalanine transporter; Provisional	97.48
PRK10197	446	gamma-aminobutyrate transporter; Provisional	97.44
PRK11049	469	D-alanine/D-serine/glycine permease; Provisional	97.39
PRK10238	456	aromatic amino acid transporter; Provisional	97.31
PRK10580	457	proY putative proline-specific permease; Provision	97.25
TIGR03810	468	arg_ornith_anti arginine/ornithine antiporter. Mem	97.23
PRK11357	445	frlA putative fructoselysine transporter; Provisio	97.16
TIGR00909	429	2A0306 amino acid transporter.	97.15
PRK11387	471	S-methylmethionine transporter; Provisional	97.14
PF13520	426	AA_permease_2: Amino acid permease; PDB: 3NCY_A 3G	97.11
TIGR00913	478	2A0310 amino acid permease (yeast).	97.1
TIGR00907	482	2A0304 amino acid permease (GABA permease).	97.06
TIGR00906	557	2A0303 cationic amino acid transport permease.	97.02
TIGR00908	442	2A0305 ethanolamine permease. The three genes used	97.01
TIGR01773	452	GABAperm gamma-aminobutyrate permease. GabP is hig	96.91
PRK10836	489	lysine transporter; Provisional	96.88
TIGR00905	473	2A0302 transporter, basic amino acid/polyamine ant	96.82
PRK15238	496	inner membrane transporter YjeM; Provisional	96.81
KOG1287	479	consensus Amino acid transporters [Amino acid tran	96.73
TIGR00911	501	2A0308 L-type amino acid transporter.	96.63
COG0531	466	PotE Amino acid transporters [Amino acid transport	96.6
TIGR00930	953	2a30 K-Cl cotransporter.	96.6
TIGR03428	475	ureacarb_perm permease, urea carboxylase system. A	96.45
TIGR00910	507	2A0307_GadC glutamate:gamma-aminobutyrate antiport	96.32
PF00324	478	AA_permease: Amino acid permease; InterPro: IPR004	93.6
COG1113	462	AnsP Gamma-aminobutyrate permease and related perm	93.15
TIGR00912	359	2A0309 spore germination protein (amino acid perme	92.28
KOG1286	554	consensus Amino acid transporters [Amino acid tran	90.4
KOG4812	262	consensus Golgi-associated protein/Nedd4 WW domain	82.99

>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=5e-37  Score=282.42  Aligned_cols=203  Identities=19%  Similarity=0.253  Sum_probs=183.2

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhh---HHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCC
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMK---RASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGF  101 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~---~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~  101 (265)
                      -+.+..+|+.+|||+|++++.|++++||+|    ++|.   +++..+|.+++++|+.+|++||++|||++++.|+.|+|+
T Consensus       241 ~~~~lf~GtaifafEGig~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP~  316 (449)
T KOG1304|consen  241 SGLPLFFGTAIFAFEGIGMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLPQ  316 (449)
T ss_pred             hhhHHHHHHHHHHhccceEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCCc
Confidence            357899999999999999999999999999    8999   999999999999999999999999999999999999995


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHHHHH
Q 046038          102 YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAV  181 (265)
Q Consensus       102 ~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~  181 (265)
                         .|+.+.++++++++++++||+|.+|..+.+|+.+.++..+                 .++++..+.+|+.+|+++..
T Consensus       317 ---~~l~~~Vkl~~ai~I~ls~pLQ~yv~~eIi~~~i~~k~~~-----------------~~~~~~~~~~R~~lVllt~~  376 (449)
T KOG1304|consen  317 ---EILSQTVKLLLAIAIFLTYPLQFYVPIEIIEPGIRKKFSE-----------------NRKKLLEYALRVFLVLLTFL  376 (449)
T ss_pred             ---cHHHHHHHHHHHHHHHHcCchhhhhhHHHHHHhHHHhcCc-----------------chhHHHHHHHHHHHHHHHHH
Confidence               3899999999999999999999999999999986543221                 11357788999999999999


Q ss_pred             HHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccc---cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046038          182 IAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRK---FSVTWMWLQVLSWTCFIVTLLAAAGSIQGL  251 (265)
Q Consensus       182 iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~---~~~~~~~~~~ii~~g~~~~v~Gty~si~~i  251 (265)
                      +|.++|+++++++|+||++++.+.+++|++++++.++++.   ..++++.|..++++|++.++.|||+|+.++
T Consensus       377 iA~~iPnL~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i  449 (449)
T KOG1304|consen  377 IAVAVPNLALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI  449 (449)
T ss_pred             HHHHCCcHHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence            9999999999999999999999999999999999976543   244566778899999999999999998764

>PTZ00206 amino acid transporter; Provisional

Probab=100.00  E-value=6.3e-36  Score=282.89  Aligned_cols=205  Identities=17%  Similarity=0.256  Sum_probs=174.6

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccc-CCCCc
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGF-GFYEP  104 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl-~~~~~  104 (265)
                      +.+.++|+++|||.||.+.||+++|||+|++  +||.+++..++.+++++|..+|++||++||++++++++.|+ |.++ 
T Consensus       257 ~~~~algi~~faF~~h~~~~~i~~~M~~~t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~p~~~-  333 (467)
T PTZ00206        257 RAIEGLGVFIFAYVFQITAYEVYMDMTNRSV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYDPVNE-  333 (467)
T ss_pred             HHHhhhhHHHhhhhhhhhhHHHHHhhcccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCCCCCC-
Confidence            5789999999999999999999999999854  89999999999999999999999999999999999999999 5444 


Q ss_pred             hHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHHHHHHHH
Q 046038          105 FWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAM  184 (265)
Q Consensus       105 ~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi  184 (265)
                       ....++++++.++++.+||++.+|+|+.+++.+..  +.+         +.+       .+++...+..+++++.++|+
T Consensus       334 -~~~~v~~~~~~~~v~~sypL~~~p~r~~i~~~~~~--~~~---------~~~-------~~~~~~~~~~l~~~~l~iAi  394 (467)
T PTZ00206        334 -PAIMVGFVGVLVKLFVSYALLGMACRNALYDVIGW--DAR---------KVA-------FWKHCIAVVTLSVVMLLCGL  394 (467)
T ss_pred             -chhhHHHHHHHHHHHHhhhhhhhhHHHHHHHHhCC--Ccc---------cCc-------hhhHHHHHHHHHHHHHHHHh
Confidence             34567888899999999999999999999987532  111         111       24455566667778899999


Q ss_pred             hcCchHHHHHHhhhhhhhhHHHHHHHHHHHHH---hcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046038          185 LFPFFNSVIGLLGAIAFWPLTVYFPVEMYISR---AKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLV  252 (265)
Q Consensus       185 ~iP~~~~vlslvGs~~~~~l~filP~l~yl~~---~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~ii  252 (265)
                      .+|+++.+++|+||++++.++|++|+++|++.   ++++.++.+|+.+++++++|++.++.|||+|+.+.+
T Consensus       395 ~vP~l~~vl~lvGa~~~~~l~fi~P~lf~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~  465 (467)
T PTZ00206        395 FIPKINTVLGFAGSISGGLLGFILPALLFMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT  465 (467)
T ss_pred             ccCCHHHhhhhhhHHHHHHHHHHHHHHHHHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence            99999999999999999999999999999984   233344455667889999999999999999998876

>PLN03074 auxin influx permease; Provisional

Probab=100.00  E-value=2.4e-35  Score=278.70  Aligned_cols=218  Identities=17%  Similarity=0.211  Sum_probs=183.7

Q ss_pred             hhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc--ccccc
Q 046038           21 TEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG--NFLTG   98 (265)
Q Consensus        21 ~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~--~il~n   98 (265)
                      +.++...+.++++++|||++|.++|||++|||||    ++|++++..++.+++++|..+|+.||++|||++++  +.+.|
T Consensus       229 ~~~~~~~f~~~~~i~faf~g~~v~~~I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~  304 (473)
T PLN03074        229 PTKLVLYFTGATNILYTFGGHAVTVEIMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSL  304 (473)
T ss_pred             chhHHHHHHHHHHHHHHhcccccHHHHHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhc
Confidence            3456678888999999999999999999999999    78999999999999999999999999999999864  56777


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHH
Q 046038           99 FGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVIL  178 (265)
Q Consensus        99 l~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~  178 (265)
                      +|.+  .+ ..+++++++++++.+|+++.+|+.+.+|+.....  +                 .+....|+++|+.++++
T Consensus       305 lp~~--~~-~~~~~~~~~i~~~~sy~l~~~p~~~~~e~~~~~~--~-----------------~k~~~~r~~~R~~lv~~  362 (473)
T PLN03074        305 LPRS--GW-RDAAVILMLIHQFITFGFACTPLYFVWEKAIGVH--D-----------------TKSICLRALARLPVVVP  362 (473)
T ss_pred             CCCc--hH-HHHHHHHHHHHHHHHHHHHHhhHHHHHHHHhccc--c-----------------cccHHHHHHHHHHHHHH
Confidence            8843  24 6789999999999999999999999998864311  0                 01246789999999999


Q ss_pred             HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc-------------ccchh--HHHHHHHHHH-HHHHHHH
Q 046038          179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIR-------------KFSVT--WMWLQVLSWT-CFIVTLL  242 (265)
Q Consensus       179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~-------------~~~~~--~~~~~~ii~~-g~~~~v~  242 (265)
                      ++++|+.+|+|+++++|+||++++.++|++|+++|++.++++             .++++  .+.|++++++ +++.++.
T Consensus       363 ~~~iA~~IP~fg~llsLvGs~~~s~l~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~  442 (473)
T PLN03074        363 IWFLAIIFPFFGPINSAVGALLVSFTVYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGF  442 (473)
T ss_pred             HHHHHHHccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhcc
Confidence            999999999999999999999999999999999999876432             11222  2567777765 5555689


Q ss_pred             HHHHHHHHHHHhcccccCCCCC
Q 046038          243 AAAGSIQGLVKDLQTYKPFSSA  264 (265)
Q Consensus       243 Gty~si~~ii~~~~~~~~f~~~  264 (265)
                      |+|+|++++++++++|+.|++.
T Consensus       443 G~~asi~~ii~~~~~~~~f~~~  464 (473)
T PLN03074        443 GGWASMTNFVRQIDTFGLFAKC  464 (473)
T ss_pred             chHHHHHHHHHhhhhhhhhhhh
Confidence            9999999999999999999874

>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=100.00  E-value=2.3e-35  Score=274.38  Aligned_cols=206  Identities=39%  Similarity=0.730  Sum_probs=188.8

Q ss_pred             HHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCCCCchHH
Q 046038           28 LQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGFYEPFWL  107 (265)
Q Consensus        28 ~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~~~~~~~  107 (265)
                      ++++|+++|+|++|.++||||++||+|    ++|+|++..++.+++.+|+.+++.|||+|||+++++++.|++  +|.|.
T Consensus       231 f~a~g~iaFaf~gH~v~peIq~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~  304 (437)
T KOG1303|consen  231 FTALGIIAFAYGGHAVLPEIQHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWL  304 (437)
T ss_pred             hhhhhheeeeecCCeeeeehHhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhH
Confidence            899999999999999999999999999    679999999999999999999999999999999999999996  46799


Q ss_pred             HHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHHHHHHHHhcC
Q 046038          108 VDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVILTAVIAMLFP  187 (265)
Q Consensus       108 ~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~~~~iAi~iP  187 (265)
                      ...+++++.+|++.+++++.+|..+.+|++...++++  +            .+ +....|.+.|+.+++.+.++|+.+|
T Consensus       305 ~~~ani~i~~h~i~s~~i~a~pl~~~~E~~~~~~~~~--~------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~P  369 (437)
T KOG1303|consen  305 IALANILIVLHLIGSYQIYAQPLFDVVEKLIGVKHPD--F------------KK-RSLVLRLLVRTFFVAVTTFVALSFP  369 (437)
T ss_pred             HHHHHHHHHHHHhhhhhhhhcchHHHHHHHhccCCcc--c------------cc-cccceeeehhhHHHHHHHHHHHhcc
Confidence            9999999999999999999999999999987643221  0            01 2246899999999999999999999


Q ss_pred             chHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 046038          188 FFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVL-SWTCFIVTLLAAAGSIQGLVKD  254 (265)
Q Consensus       188 ~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~i-i~~g~~~~v~Gty~si~~ii~~  254 (265)
                      +|+++++++||+...++++++|+++|++.+|+++...+|+++|.+ +++|+++++....+++++++.+
T Consensus       370 fFg~l~~lvGa~~~~p~t~ilP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~  437 (437)
T KOG1303|consen  370 FFGDLLSLVGAFLFWPLTFILPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID  437 (437)
T ss_pred             ccHhHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence            999999999999999999999999999999988888999999988 7999999999999999988764

>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR)

Probab=99.97  E-value=1.5e-32  Score=254.67  Aligned_cols=216  Identities=25%  Similarity=0.366  Sum_probs=180.6

Q ss_pred             chhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccch-hhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccc
Q 046038           20 STEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPEN-KVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTG   98 (265)
Q Consensus        20 ~~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~-~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~n   98 (265)
                      ...+.++.+.++|+++|||.||.++||+++|||+|+  + +|+.+++..++.+++++|+.+|+.||++||+++++|++.|
T Consensus       187 ~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~~~~--~~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n  264 (409)
T PF01490_consen  187 PFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMKDPS--KFKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLN  264 (409)
T ss_pred             ccchhhHHHHhhhhhhhhhhcccccceeeeeccCCc--cccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhc
Confidence            345677899999999999999999999999999993  2 3566999999999999999999999999999999999999


Q ss_pred             cCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHH
Q 046038           99 FGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVIL  178 (265)
Q Consensus        99 l~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~  178 (265)
                      +|.++  +...++++++.++++.+||++.+|+++.+|+.+..+...++. +.    +    .+...+++|..+|+.+++.
T Consensus       265 ~~~~~--~~~~i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~~~~-~~----~----~~~~~~~~~~~~~~~~~~~  333 (409)
T PF01490_consen  265 LPNDD--VLIIIARILLVISLLLSYPLQLFPARNSLENLLFKRAASSRD-SP----K----NTPSSRWLRYLIRIILVLL  333 (409)
T ss_pred             CCCcc--cccccccccchhhhhhccccccchhHhhhhhheecccccccc-cc----c----cccccceeeeeeecchhhh
Confidence            98543  678899999999999999999999999999987532000000 00    0    0112357789999999999


Q ss_pred             HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHH-----HHHHHHHHHHHHHHHHHHHHH
Q 046038          179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWM-----WLQVLSWTCFIVTLLAAAGSI  248 (265)
Q Consensus       179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~-----~~~~ii~~g~~~~v~Gty~si  248 (265)
                      +.++|+.+|+++++++++||++++.++|++|+++|+|.+++++...+++     +++.++++|++.++.|+|+++
T Consensus       334 ~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i  408 (409)
T PF01490_consen  334 SFLIAIFVPNFGDIISLVGALFGSFISFILPALLYLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI  408 (409)
T ss_pred             hhhhhhhccchhhhhcccchHHHHhHHHHHHHHHHHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence            9999999999999999999999999999999999999987655333332     356678899999999999876

UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.

>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]

Probab=99.95  E-value=2.1e-27  Score=219.95  Aligned_cols=220  Identities=19%  Similarity=0.306  Sum_probs=182.7

Q ss_pred             cccCchhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccc
Q 046038           16 VDVTSTEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNF   95 (265)
Q Consensus        16 ~~~~~~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~i   95 (265)
                      ++..+...+++.+.++++++|||.||.++.++++|||||  +++++.++...+...+.++|..+|.+||+.|||++.+|+
T Consensus       185 ~~~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~El~~~--s~~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~  262 (411)
T KOG1305|consen  185 YLVPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNELKDR--SVKKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNL  262 (411)
T ss_pred             cccCCcchhhhhhhhhhhhheeeeccccceeeeeeeeCc--hHHHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHH
Confidence            334444455889999999999999999999999999999  568999999999999999999999999999999999999


Q ss_pred             ccccCCCCch----HHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHH
Q 046038           96 LTGFGFYEPF----WLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIW  171 (265)
Q Consensus        96 l~nl~~~~~~----~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~  171 (265)
                      +.++|.....    +....++..+.++++..+|+..+|+|..++..+....++.         +      +..+.++.++
T Consensus       263 l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~~fPlr~~l~~~~~~~~~~~---------~------~~s~~r~~~i  327 (411)
T KOG1305|consen  263 LHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIVLFPLRMNLDELLFPYQPGL---------T------SFSGKRHFVI  327 (411)
T ss_pred             HhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHHhchHHHHHHHHhcccCCCC---------C------CccceehhHH
Confidence            9999854322    2357899999999999999999999999888764322221         0      1123556788


Q ss_pred             HHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046038          172 RTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGL  251 (265)
Q Consensus       172 r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~i  251 (265)
                      +..++..+.+.|+.+|+++++++++||++++.++|++|+++|++..|+  ++......+...++++.+++.|+..-+.++
T Consensus       328 tl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~FI~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~  405 (411)
T KOG1305|consen  328 TLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISFILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDL  405 (411)
T ss_pred             HHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHHHHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            999999999999999999999999999999999999999999998775  223333456667888888888888888777


Q ss_pred             HHh
Q 046038          252 VKD  254 (265)
Q Consensus       252 i~~  254 (265)
                      ..+
T Consensus       406 ~~~  408 (411)
T KOG1305|consen  406 LAK  408 (411)
T ss_pred             Hhc
Confidence            654

>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]

Probab=99.95  E-value=4.9e-30  Score=225.97  Aligned_cols=223  Identities=18%  Similarity=0.259  Sum_probs=189.9

Q ss_pred             hHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCC
Q 046038           22 EKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGF  101 (265)
Q Consensus        22 ~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~  101 (265)
                      .++.+++.++|+++|+|..|..+|+++..|++|    ++|+..+.++-+.+.++-..+|..||++||+++|..|++|+|.
T Consensus       299 idi~~fPisvG~iVFsYTSqIFLP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp~  374 (524)
T KOG4303|consen  299 IDINTFPISVGMIVFSYTSQIFLPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLPN  374 (524)
T ss_pred             EEcccCceEEEEEEEeeeceeeccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCCc
Confidence            344467789999999999999999999999999    7899999999999999999999999999999999999999993


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCC-Cccc-cchhHHHHHHHHHHHH
Q 046038          102 YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSC-GVCY-VNMFRVIWRTVYVILT  179 (265)
Q Consensus       102 ~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~-~~~~-~~~~r~~~r~~~v~~~  179 (265)
                       .  ....++|+++++..+.|||+..+.+.+.+|+-+..-.|+.+         .|.+ +.+. .+.+-+.+|..+++.+
T Consensus       375 -q--sfk~~VN~fLV~KALLSYPLPfyAAvelLe~nlF~g~p~t~---------Fpscys~Dg~Lk~WgltlR~~lvvfT  442 (524)
T KOG4303|consen  375 -Q--SFKILVNLFLVVKALLSYPLPFYAAVELLENNLFLGYPQTP---------FPSCYSPDGSLKEWGLTLRIILVVFT  442 (524)
T ss_pred             -c--chhhhhhHHHHHHHHHcCCchHHHHHHHHHHhhhcCCCCCC---------CceeeCCCcchhhheeeeeeHHHHHH
Confidence             2  35778999999999999999999999999987654333322         2211 1121 1234457999999999


Q ss_pred             HHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc
Q 046038          180 AVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGSIQGLVKDLQTYK  259 (265)
Q Consensus       180 ~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~si~~ii~~~~~~~  259 (265)
                      .++|+.+|+|..+|+|+|++++++++|+.|++||++++++............|++.|..+++.|.|-|..++++++++.-
T Consensus       443 llmAi~vPhf~~LMGl~Gs~TGtmLsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~  522 (524)
T KOG4303|consen  443 LLMAISVPHFVELMGLVGSITGTMLSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSAD  522 (524)
T ss_pred             HHHHHHhHHHHHHHHhhcccccccHHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccC
Confidence            99999999999999999999999999999999999998766555555667788999999999999999999999998754


Q ss_pred             C
Q 046038          260 P  260 (265)
Q Consensus       260 ~  260 (265)
                      +
T Consensus       523 ~  523 (524)
T KOG4303|consen  523 S  523 (524)
T ss_pred             C
Confidence            3

>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]

Probab=99.57  E-value=5.7e-14  Score=131.35  Aligned_cols=219  Identities=14%  Similarity=0.132  Sum_probs=146.2

Q ss_pred             hHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCcccccccCC
Q 046038           22 EKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGFGF  101 (265)
Q Consensus        22 ~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl~~  101 (265)
                      ....+...++|+++|||+||+++|++++||++++  +++.+|+...+..+..++|..+++.+|..+|+++.++++++.++
T Consensus       190 ~~~~~~~~~ipv~vfsF~~h~~i~si~~~~~~~~--~~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~~  267 (415)
T COG0814         190 SFWKYLLLAIPVFVFSFGFHGNIPSLVNYMRKNS--KKAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKEQ  267 (415)
T ss_pred             hhHHHHHHHhhHHHhhhhCCccchHHHHHhccch--hHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccCc
Confidence            4455678999999999999999999999999984  34599999999999999999999999999999999999999974


Q ss_pred             CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCc--cccCCCCCcccc-chhHHHHHHHHHHH
Q 046038          102 YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRH--PITFPSCGVCYV-NMFRVIWRTVYVIL  178 (265)
Q Consensus       102 ~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~--~~~~p~~~~~~~-~~~r~~~r~~~v~~  178 (265)
                      ++ ..  ..+......+...+++.+.++.+......++.-..-.+.+++..  +...+  ++.+. .........+.+..
T Consensus       268 ~~-~~--l~~~~~~~~~~~~~~~~~~f~~~Ai~tSFlgv~lg~~~~~~~~~~~~~~~~--~r~~~~~~~~~~~~i~~l~~  342 (415)
T COG0814         268 NI-SL--LSALAGVINSPILSIALNIFALFAIATSFLGVYLGLFEGLADLFKKSNSKP--GRKKTGLLTFLPPLIFALLY  342 (415)
T ss_pred             hH-HH--HHHHHHhhcchHHHHHHHHHHHHHHHHHHhCchhhHHHhhhHHHHhccCcc--cchhhhhhhHHHHHHHHHHH
Confidence            32 21  12223333333455666655555443332221000000000000  00000  00111 12233455556778


Q ss_pred             HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHHHHHHHHH
Q 046038          179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVTLLAAAGS  247 (265)
Q Consensus       179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~v~Gty~s  247 (265)
                      ....+...|..+.+++.+|+..+..+.++.|...+.+....+....++....+++++|+..++.-.++.
T Consensus       343 ~~~~~~~~~~~~~~~~~iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~~~  411 (415)
T COG0814         343 PWGFAIALGYAGGLIATIGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFLAT  411 (415)
T ss_pred             HHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHHHH
Confidence            889999999999999999999999999999999998764322222111345677888888777655544

>TIGR00837 araaP aromatic amino acid transport protein

Probab=98.99  E-value=1.1e-08  Score=94.59  Aligned_cols=170  Identities=13%  Similarity=0.094  Sum_probs=121.7

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc-------c---
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG-------N---   94 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~-------~---   94 (265)
                      .+.+.++++..++|++|.+++++.+++++|   +|+.+|+...+..++.++|+.+........+.+.-.       +   
T Consensus       178 ~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~---~k~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~  254 (381)
T TIGR00837       178 PYILSALPVCLTSFGFHGNVPSLYKYYDGN---VKKVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDG  254 (381)
T ss_pred             HHHHHHHHHHHHHHHcccccHHHHHHhccC---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHH
Confidence            357788999999999999999999999876   379999999999999999998865555444333211       1   


Q ss_pred             cccccCC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHH
Q 046038           95 FLTGFGF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRT  173 (265)
Q Consensus        95 il~nl~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~  173 (265)
                      ....+.. -+..|...++.++-.++++.|+.-.....+|...+.++..  +     +           +   ..|.....
T Consensus       255 l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~--~-----~-----------~---~~~~~~~~  313 (381)
T TIGR00837       255 LVNALQGVLKSSAIELALELFSNFALASSFLGVTLGLFDYLADLFKFD--D-----S-----------K---KGRFKTGL  313 (381)
T ss_pred             HHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC--c-----c-----------c---CCCchhhh
Confidence            1111100 0123456667777788888888777777777766654321  1     0           0   11334455


Q ss_pred             HHHHHHHHHHHhcCchH-HHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038          174 VYVILTAVIAMLFPFFN-SVIGLLGAIAFWPLTVYFPVEMYISRAKI  219 (265)
Q Consensus       174 ~~v~~~~~iAi~iP~~~-~vlslvGs~~~~~l~filP~l~yl~~~~~  219 (265)
                      +..+...++|...|+.. ..++..| +.++.+.+++|++++++.+|+
T Consensus       314 ~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~~p~l~~~~~r~~  359 (381)
T TIGR00837       314 LTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVIIPALLAWKARKK  359 (381)
T ss_pred             hhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHhc
Confidence            66678889999999866 8999999 889999999999999998764

aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.

>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=98.80  E-value=3.9e-07  Score=84.90  Aligned_cols=173  Identities=17%  Similarity=0.259  Sum_probs=120.9

Q ss_pred             hhHHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh--hhh---------hhccCC
Q 046038           21 TEKIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCG--TLG---------YAAFGD   89 (265)
Q Consensus        21 ~~~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g--~~G---------Y~~fG~   89 (265)
                      ..+.-..+.++++.++||+.|.++|++.+.+++.   .||.+|++..+..+..++|++.-  +.|         -..-|+
T Consensus       180 ~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~d---~~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~  256 (394)
T PF03222_consen  180 PSDWSYILPALPVLVFSFGFHNIVPSLVKYLGGD---PKKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGG  256 (394)
T ss_pred             cccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCC
Confidence            3445557799999999999999999999999864   37899999999999999988762  233         112222


Q ss_pred             CCCc--ccccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchh
Q 046038           90 KAPG--NFLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMF  167 (265)
Q Consensus        90 ~~~~--~il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~  167 (265)
                      ++.+  ..+.+.. + ..+...++.++-.+++..||-=...-.+|.+++.++.  +++                   ...
T Consensus       257 ~~~~~~~~~~~~~-~-s~~i~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~k~--~~~-------------------~~~  313 (394)
T PF03222_consen  257 NVSALVSALANVS-G-SPWISILGSIFAFFAIATSFLGVYLGLFDFLADLFKL--KNN-------------------SSG  313 (394)
T ss_pred             ChHHHHHHHHhhc-C-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--Ccc-------------------ccc
Confidence            2221  1222222 1 2355667778888888888855555677777766532  110                   112


Q ss_pred             HHHHHHHHHHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc
Q 046038          168 RVIWRTVYVILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKIR  220 (265)
Q Consensus       168 r~~~r~~~v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~~  220 (265)
                      |...-.+..+...++|+..|+ |-..+++.| ...+.+..++|+++.+|.++++
T Consensus       314 r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~~~~il~~ilP~~m~~~~r~~~  366 (394)
T PF03222_consen  314 RLKTWLLTFLPPLIFALLFPNGFLIALGYAG-IGIAILLGILPALMVWKARKRK  366 (394)
T ss_pred             hHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-HHHHHHHHHHHHHHHHHHHccc
Confidence            333344456678889999996 889999999 9999999999999999987543

A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.

>PRK15132 tyrosine transporter TyrP; Provisional

Probab=98.62  E-value=1.5e-06  Score=81.13  Aligned_cols=189  Identities=12%  Similarity=0.135  Sum_probs=129.5

Q ss_pred             HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Cc-----ccc
Q 046038           27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKA-----PG-----NFL   96 (265)
Q Consensus        27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~-----~~-----~il   96 (265)
                      ++.+++++.+||+.|.++|++.+.+++.   .+|.+|++..+..+..++|+..=......-+.+.     ++     +++
T Consensus       183 ~~~~iPvl~~SFgfh~iIpsl~~y~~~~---~~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l  259 (403)
T PRK15132        183 ALSAIPVIFTSFGFHGSVPSIVSYMGGN---IRKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLL  259 (403)
T ss_pred             HHHHHHHHHHHhhCCcccHHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHH
Confidence            7789999999999999999999999764   3789999999999999999887544444333321     11     223


Q ss_pred             cccCC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHH
Q 046038           97 TGFGF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVY  175 (265)
Q Consensus        97 ~nl~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~  175 (265)
                      ..+.. -+..|...++.++..+++..||-=.....+|.+...+..  +++                   ...|...-.+.
T Consensus       260 ~~l~~~~~~~~~~~~~~~fa~~Ai~TSFlGv~lgl~d~l~d~~~~--~~~-------------------~~~r~~~~~l~  318 (403)
T PRK15132        260 QALREVVASPHVELAVHLFADLALATSFLGVALGLFDYLADLFQR--RNT-------------------VGGRLQTGLIT  318 (403)
T ss_pred             HHHHHHccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc--Ccc-------------------ccCCchhehhh
Confidence            32221 012366677777777888888855555667776665431  110                   11244455667


Q ss_pred             HHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhccc-ccch----hHHHHHHHHHHHHHHH
Q 046038          176 VILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKIR-KFSV----TWMWLQVLSWTCFIVT  240 (265)
Q Consensus       176 v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~~-~~~~----~~~~~~~ii~~g~~~~  240 (265)
                      .+..+++|+..|+ |...+++.|.. .+.+.+++|+++-+|.++.+ ....    ....+++++++|++..
T Consensus       319 flppli~a~~~P~~F~~al~~aG~~-~ail~~ilP~~m~~~~r~~~~~~~y~v~gg~~~~~~v~~~G~~~i  388 (403)
T PRK15132        319 FLPPLAFALFYPRGFVMALGYAGVA-LAVLALLLPSLLVWQSRKQNPQAGYRVKGGRPALALVFLCGIAVI  388 (403)
T ss_pred             HHHHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhhcCCCCCccCCCChHHHHHHHHHHHHHH
Confidence            7889999999996 88899998864 78999999999999887533 1111    2234455566665543

>PRK10483 tryptophan permease; Provisional

Probab=98.48  E-value=6.9e-06  Score=76.74  Aligned_cols=168  Identities=13%  Similarity=0.081  Sum_probs=117.0

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhc-----------cCCCCCcc
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAA-----------FGDKAPGN   94 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~-----------fG~~~~~~   94 (265)
                      ..+.++++++++|+.|.++|++.+.+++.   .+|.+|++..+..+..++|+..=...-..           -|++++ .
T Consensus       193 ~~~~alPvl~~SFgfh~iIPsl~~y~~~d---~~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni~-~  268 (414)
T PRK10483        193 YLLMTLPFCLASFGYHGNVPSLMKYYGKD---PKTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNID-V  268 (414)
T ss_pred             HHHHHHHHHHhhccCCCcchHHHHHhCcC---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCChH-H
Confidence            36689999999999999999999998863   37999999999999999999842222221           222221 1


Q ss_pred             cccccCC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHH
Q 046038           95 FLTGFGF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRT  173 (265)
Q Consensus        95 il~nl~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~  173 (265)
                      .+..+.. -+..+...++.++..+++..||-=.....+|.++..++.  +++                   ...|...-.
T Consensus       269 L~~~l~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~d~l~D~~k~--~~~-------------------~~~r~~~~~  327 (414)
T PRK10483        269 LVQALSGVLNSRSLDLLLVVFSNFAVASSFLGVTLGLFDYLADLFGF--DDS-------------------AMGRFKTAL  327 (414)
T ss_pred             HHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeeh
Confidence            1122211 012255566777777888888855555667777766532  110                   012233344


Q ss_pred             HHHHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038          174 VYVILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKI  219 (265)
Q Consensus       174 ~~v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~  219 (265)
                      +..+-..++|+..|+ |=.-++..|.. .+.+.-++|+++-.+.||+
T Consensus       328 ltflPPl~~al~~P~~Fl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  373 (414)
T PRK10483        328 LTFLPPVVGGLLFPNGFLYAIGYAGLA-ATIWAAIVPALLARASRKR  373 (414)
T ss_pred             hhHhhHHHHHHHhHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHhc
Confidence            567889999999996 88899999977 6788899999999998864

>PRK13629 threonine/serine transporter TdcC; Provisional

Probab=98.32  E-value=3.1e-05  Score=72.72  Aligned_cols=203  Identities=11%  Similarity=0.082  Sum_probs=135.1

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhh----c---CCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCC-----Cc
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTL----R---SSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKA-----PG   93 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~m----k---~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~-----~~   93 (265)
                      .+..++++++|+|+-|+++|+....+    +   +++...+|-+|++..+..+..++|+..-+..-..-+++.     ++
T Consensus       210 ~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~q  289 (443)
T PRK13629        210 TVWLGISIMVFSFNFSPIVSSFVVSKREEYEKDFGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQ  289 (443)
T ss_pred             HHHHHHHHHHHHHhccccchHHHHHHHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHh
Confidence            46789999999999999999998884    3   222124789999999999999999998776666655442     12


Q ss_pred             cc--ccc----cCCC-Cc-----hHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcc-cCCCCccCCCCccccCCCCC
Q 046038           94 NF--LTG----FGFY-EP-----FWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCH-KWPESGFVTKRHPITFPSCG  160 (265)
Q Consensus        94 ~i--l~n----l~~~-~~-----~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~-~~~~~~~i~~~~~~~~p~~~  160 (265)
                      |+  +..    ++.. +.     .++..+..++..+++..||-=....++|.++.+... ..+.    +++   +     
T Consensus       290 n~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~ifa~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~----~~~---~-----  357 (443)
T PRK13629        290 NIPVLSYLANHFASMTGTKSTFAITLEYAASIIALVAIFKSFFGHYLGTLEGLNGLILKFGYKG----DKT---K-----  357 (443)
T ss_pred             CCcHHHHHHHHhhhcccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc----ccc---c-----
Confidence            22  221    2210 00     234555666666777788855556778888877621 1111    000   1     


Q ss_pred             ccccchhHHHHHHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHHHH
Q 046038          161 VCYVNMFRVIWRTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRKFSVTWMWLQVLSWTCFIVT  240 (265)
Q Consensus       161 ~~~~~~~r~~~r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~~~~~~~~~~~ii~~g~~~~  240 (265)
                       .+.+..+.+...++++.+++.|+.=|++=.++.-+|+-....+.|++|...-+|.-.-++.+ .+..|+++++.|++..
T Consensus       358 -~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~~~~gPiia~il~l~P~y~i~kvp~l~~yr-~~~~n~fv~~~Gl~~i  435 (443)
T PRK13629        358 -VSLGKLNTISMIFIMGSTWVVAYANPNILDLIEAMGAPIIASLLCLLPMYAIRKAPSLAKYR-GRLDNVFVTVIGLLTI  435 (443)
T ss_pred             -cCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhhHHHHHHHHHHHHHHHHccHHHHHhC-CCchhHHHHHHHHHHH
Confidence             11234556677778899999999999999999988888888999999998887763211111 1224678888887754


Q ss_pred             HH
Q 046038          241 LL  242 (265)
Q Consensus       241 v~  242 (265)
                      ..
T Consensus       436 ~~  437 (443)
T PRK13629        436 LN  437 (443)
T ss_pred             HH
Confidence            33

>TIGR00814 stp serine transporter

Probab=98.32  E-value=6.4e-06  Score=76.87  Aligned_cols=180  Identities=11%  Similarity=0.086  Sum_probs=125.5

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhh----hhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCC-----cc
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQ----DTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAP-----GN   94 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~----~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~-----~~   94 (265)
                      ..++..++++..+||.+|.++++..    ++.++|+.+.+|-+|++..+..+..++|+..-+..-...+.+.-     +|
T Consensus       185 ~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~n  264 (397)
T TIGR00814       185 LKTLWLTIPVMVFSFNHSPIISSFAISYREEYGDKEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQN  264 (397)
T ss_pred             HHHHHHHHHHHHHHHHccccchHHHHHHHHHcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcC
Confidence            4568899999999999999999997    33443432357899999999999999999887777766665431     22


Q ss_pred             --cccccC-CCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHH
Q 046038           95 --FLTGFG-FYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIW  171 (265)
Q Consensus        95 --il~nl~-~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~  171 (265)
                        .+..+. ..+..+...+..++-.+.+..||-=....++|.++..+....+.    +++   +      .+++..+...
T Consensus       265 is~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG~~lg~~e~l~~l~~~~~~~----~~~---~------~~~~~~~~~~  331 (397)
T TIGR00814       265 ISILSYLANHFNAAWISYAGPIVAIVAISKSFFGHYLGAREGLNGIVLNSLKM----KGK---K------INIRKLNRAI  331 (397)
T ss_pred             cHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcc----ccc---c------cCHHHHHHHH
Confidence              111111 00112455566666677788888777778888888876211111    000   0      1123445566


Q ss_pred             HHHHHHHHHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHH
Q 046038          172 RTVYVILTAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISR  216 (265)
Q Consensus       172 r~~~v~~~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~  216 (265)
                      ..++++.++..|+.=|++=.+++-+|+-....+.|++|...-.|.
T Consensus       332 ~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~~~~p~~~~~~v  376 (397)
T TIGR00814       332 AIFIVLTTWIVAYINPSILSFIEALGGPIIAMILFLMPMYAIYKV  376 (397)
T ss_pred             HHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHHHHHHHHHHHcc
Confidence            677888999999999999999997788888899999999887776

The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.

>PRK09664 tryptophan permease TnaB; Provisional

Probab=98.32  E-value=2.7e-05  Score=72.81  Aligned_cols=169  Identities=12%  Similarity=0.090  Sum_probs=115.8

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhh--hhhh---------hhccCCCCCcc
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLC--GTLG---------YAAFGDKAPGN   94 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~--g~~G---------Y~~fG~~~~~~   94 (265)
                      .++.+++++.++|+.|+++|++.+.+++.   .+|.+|++.....+..++|...  .+.|         -.+-|++++.-
T Consensus       194 ~i~~alPVl~~SFgfh~iIPsl~~y~~~d---~~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l  270 (415)
T PRK09664        194 YIFMALPVCLASFGFHGNIPSLIICYGKR---KDKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSL  270 (415)
T ss_pred             HHHHHHHHHHHhhhCCCcchHHHHHhCcc---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHH
Confidence            36679999999999999999999998854   3678888888888888888654  2222         12233333331


Q ss_pred             cccccCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHH
Q 046038           95 FLTGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTV  174 (265)
Q Consensus        95 il~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~  174 (265)
                      +..-....+..+...++.++..+++..||-=.....+|.+...++.  +++                   ...|...-.+
T Consensus       271 ~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFlGv~LGL~D~l~D~~~~--~~~-------------------~~~r~~~~~l  329 (415)
T PRK09664        271 VKSFLGTKQHGIIEFCLLVFSNLAVASSFFGVTLGLFDYLADLFKI--DNS-------------------HGGRFKTVLL  329 (415)
T ss_pred             HHHHHhhccChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC--CCc-------------------cccceeeehh
Confidence            1111110112366777778888888888855555667777665532  111                   0123333445


Q ss_pred             HHHHHHHHHHhcCc-hHHHHHHhhhhhhhhHHHHHHHHHHHHHhcc
Q 046038          175 YVILTAVIAMLFPF-FNSVIGLLGAIAFWPLTVYFPVEMYISRAKI  219 (265)
Q Consensus       175 ~v~~~~~iAi~iP~-~~~vlslvGs~~~~~l~filP~l~yl~~~~~  219 (265)
                      ..+...++|+..|+ |=.-++..|.. .+.+.-++|+++-.|.||+
T Consensus       330 tflPPl~~al~~P~gFl~AL~yAG~~-~~il~~ilP~lM~~~~Rk~  374 (415)
T PRK09664        330 TFLPPALLYLIFPNGFIYGIGGAGLC-ATIWAVIIPAVLAIKARKK  374 (415)
T ss_pred             hHhhhHHHHHHhhHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhcc
Confidence            67888999999997 88899999996 6688899999999998864

>PRK11021 putative transporter; Provisional

Probab=97.88  E-value=0.0021  Score=59.97  Aligned_cols=57  Identities=12%  Similarity=0.339  Sum_probs=50.4

Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      .+.+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|......
T Consensus       175 ~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---k~iPrAi~~~~~~~~~lYil~~~~  231 (410)
T PRK11021        175 EWSGLFAALGVMFWCFVGIEAFAHLASEFKNPE---RDFPRALMIGLLLAGLVYWACTVV  231 (410)
T ss_pred             cHHHHHHHHHHHHHHHhcHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            344577889999999999999999999999993   689999999999999999998654

>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter

Probab=97.67  E-value=0.0027  Score=60.55  Aligned_cols=50  Identities=14%  Similarity=0.002  Sum_probs=42.4

Q ss_pred             HHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038           33 NIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA   85 (265)
Q Consensus        33 i~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~   85 (265)
                      .+.|+|.|-......-+|+|||.   |+.+|++..+..++.++|....+.-..
T Consensus       202 ~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~  251 (474)
T TIGR03813       202 SIFLFYAGMEMNAVHVKDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAF  251 (474)
T ss_pred             HHHHHHhchhHhHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999993   789999999999999999876554333

Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.

>PRK10655 potE putrescine transporter; Provisional

Probab=97.65  E-value=0.0039  Score=58.66  Aligned_cols=57  Identities=11%  Similarity=0.061  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY   84 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY   84 (265)
                      .....++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|++......
T Consensus       189 ~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~  245 (438)
T PRK10655        189 SAVGSSIAMTLWAFLGLESACANSDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIA  245 (438)
T ss_pred             HHHHHHHHHHHHHHhhhhhhhhhHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3466778889999999999999999999993   68999999999999999998765443

>PRK10644 arginine:agmatin antiporter; Provisional

Probab=97.59  E-value=0.0068  Score=57.23  Aligned_cols=55  Identities=13%  Similarity=0.153  Sum_probs=48.4

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG   83 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G   83 (265)
                      .+..++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|.++.+.-
T Consensus       192 ~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~  246 (445)
T PRK10644        192 AIQSTLNVTLWSFIGVESASVAAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTAI  246 (445)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHHH
Confidence            455678889999999999999999999993   6899999999999999999887653

>PRK10746 putative transport protein YifK; Provisional

Probab=97.54  E-value=0.0082  Score=57.14  Aligned_cols=56  Identities=13%  Similarity=0.005  Sum_probs=47.2

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      +..+..++....|+|.|--.....-.|+|||   +|+.+|+...++....++|+.....
T Consensus       199 ~~g~~~~~~~~~faf~G~e~v~~~a~E~knP---~k~iP~Ai~~~~~~i~~~yv~~~~~  254 (461)
T PRK10746        199 WKGFLTALCIVVASYQGVELIGITAGEAKNP---QVTLRSAVGKVLWRILIFYVGAIFV  254 (461)
T ss_pred             HHHHHHHHHHHHHHhcCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3446689999999999999999999999999   3789999998888888888876443

>PRK10435 cadB lysine/cadaverine antiporter; Provisional

Probab=97.50  E-value=0.0092  Score=56.26  Aligned_cols=62  Identities=11%  Similarity=0.165  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhcc
Q 046038           23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAF   87 (265)
Q Consensus        23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~f   87 (265)
                      ...++..++....|+|.|-......-+|+|||.   |+.+|++..+..++.++|+...+.-....
T Consensus       185 ~~~~~~~a~~~~~faf~G~E~~~~~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~  246 (435)
T PRK10435        185 DGHAIIKSILLCLWAFVGVESAAVSTGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISGMF  246 (435)
T ss_pred             hHHHHHHHHHHHHHHHhhHHHHHHHHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence            456788899999999999999999999999993   68999999999999999999876544333

>PRK15049 L-asparagine permease; Provisional

Probab=97.48  E-value=0.0074  Score=58.07  Aligned_cols=60  Identities=15%  Similarity=0.143  Sum_probs=48.3

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhc
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAA   86 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~   86 (265)
                      +...+.++...+|+|.|-......-+|+|||+   |+.+|++..++....++|+.....-...
T Consensus       219 ~~~~~~~~~~~~faf~G~e~i~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~  278 (499)
T PRK15049        219 LLPALVLIQGVVFAFASIEMVGTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVML  278 (499)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHhee
Confidence            33455667789999999999999999999993   6799999999998888888875544333

>PRK10249 phenylalanine transporter; Provisional

Probab=97.48  E-value=0.0095  Score=56.59  Aligned_cols=55  Identities=15%  Similarity=0.108  Sum_probs=47.6

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG   83 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G   83 (265)
                      .+..++....|+|.|-......-+|+|||.   |+.+|++..++....++|......-
T Consensus       210 ~~~~~~~~~~~af~G~e~~~~~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~  264 (458)
T PRK10249        210 GLILSLAVIMFSFGGLELIGITAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVL  264 (458)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999993   6899999999999999998754433

>PRK10197 gamma-aminobutyrate transporter; Provisional

Probab=97.44  E-value=0.0076  Score=57.05  Aligned_cols=56  Identities=16%  Similarity=0.136  Sum_probs=49.0

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      +.+...++....|+|.|-......-.|+|||   +|+.+|++..++..+.++|+...+.
T Consensus       180 ~~~~~~a~~~~~faf~G~e~~~~~a~E~knP---~r~iPrai~~~~~~i~i~Yil~~~~  235 (446)
T PRK10197        180 FGAVLSAMLITMFSFMGAEIVTIAAAESDTP---EKHIVRATNSVIWRISIFYLCSIFV  235 (446)
T ss_pred             HHHHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            3467899999999999999999999999999   2689999999999999999986554

>PRK11049 D-alanine/D-serine/glycine permease; Provisional

Probab=97.39  E-value=0.015  Score=55.38  Aligned_cols=57  Identities=12%  Similarity=0.046  Sum_probs=47.8

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY   84 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY   84 (265)
                      ...+.++....|+|.|-......-+|+|||+   |+.+|++..+...+.++|......-+
T Consensus       211 ~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~  267 (469)
T PRK11049        211 SGFFAGFQIAVFAFVGIELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIM  267 (469)
T ss_pred             HHHHHHHHHHHHHHhcHHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            3577899999999999999999999999992   68999998777777888887665544

>PRK10238 aromatic amino acid transporter; Provisional

Probab=97.31  E-value=0.016  Score=55.04  Aligned_cols=51  Identities=12%  Similarity=0.116  Sum_probs=43.1

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhh
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLC   79 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~   79 (265)
                      ....+++...|+|.|--.....-+|+|||+   |+.+|++..++....++|+..
T Consensus       201 ~~~~~~~~~~~af~G~e~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~  251 (456)
T PRK10238        201 GLVMMMAIIMFSFGGLELVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS  251 (456)
T ss_pred             HHHHHHHHHHHHhcCHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence            455778889999999999999999999993   689999988888888777654

>PRK10580 proY putative proline-specific permease; Provisional

Probab=97.25  E-value=0.02  Score=54.23  Aligned_cols=54  Identities=15%  Similarity=0.118  Sum_probs=45.9

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      ..+.++....|+|.|-......-+|+|||   +|+.+|+...+.....++|......
T Consensus       200 ~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~k~iPrAi~~~~~~~~~~y~~~~~~  253 (457)
T PRK10580        200 GMVMSLQMVMFAYGGIEIIGITAGEAKDP---EKSIPRAINSVPMRILVFYVGTLFV  253 (457)
T ss_pred             HHHHHHHHHHHHHhCHHHHHHHHHHhcCh---hhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56788899999999999999999999999   2679999998888788888777543

>TIGR03810 arg_ornith_anti arginine/ornithine antiporter

Probab=97.23  E-value=0.027  Score=53.59  Aligned_cols=59  Identities=10%  Similarity=0.120  Sum_probs=49.2

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG   88 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG   88 (265)
                      .+..++....|+|.|-.....+-+|+|++    |+.+|++..++..+.++|..+.+..+...+
T Consensus       196 ~~~~~~~~~~~~f~G~e~~~~~a~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~  254 (468)
T TIGR03810       196 QVKNMMLVTVWVFIGIEGASMLSARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMT  254 (468)
T ss_pred             HHHHHHHHHHHHHHhHhHHhhhHhhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcC
Confidence            35578889999999988888888888865    899999999999999999998876665444

Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.

>PRK11357 frlA putative fructoselysine transporter; Provisional

Probab=97.16  E-value=0.012  Score=55.64  Aligned_cols=57  Identities=16%  Similarity=0.249  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG   83 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G   83 (265)
                      +.+.+.++....|+|.|-......-+|+|||+   |+.+|++..++.++.++|+......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~  250 (445)
T PRK11357        194 FMALLAGISATSWSYTGMASICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALVI  250 (445)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHH
Confidence            44567888999999999999999999999993   6899999999999999998876543

>TIGR00909 2A0306 amino acid transporter

Probab=97.15  E-value=0.027  Score=52.78  Aligned_cols=58  Identities=12%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY   84 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY   84 (265)
                      ....+.++....|+|.|........+|+|||.   |+.+|++..++.++.++|+.......
T Consensus       194 ~~~~~~~~~~~~~af~G~e~~~~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~  251 (429)
T TIGR00909       194 FGGVGAATALVFFAFIGFEAISTAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVIL  251 (429)
T ss_pred             HHHHHHHHHHHHHHHhhHHHHHhhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHh
Confidence            34567888899999999999999999999992   68999999999999999999865544

>PRK11387 S-methylmethionine transporter; Provisional

Probab=97.14  E-value=0.023  Score=54.08  Aligned_cols=57  Identities=14%  Similarity=0.098  Sum_probs=49.1

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLG   83 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~G   83 (265)
                      ....+.++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|+...+..
T Consensus       205 ~~~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~  261 (471)
T PRK11387        205 GLPILMTMVAVNFAFSGTELIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVL  261 (471)
T ss_pred             HHHHHHHHHHHHHHHcCHHHHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788889999999999999999999993   6899999999999999999886543

>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A

Probab=97.11  E-value=0.034  Score=51.86  Aligned_cols=59  Identities=20%  Similarity=0.310  Sum_probs=50.6

Q ss_pred             HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038           27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK   90 (265)
Q Consensus        27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~   90 (265)
                      .+.+++...|+|.|-......-+|+||     |+.+|++..++.++.++|......-....+++
T Consensus       190 ~~~~~~~~~~~~~G~e~~~~~~~E~k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~  248 (426)
T PF13520_consen  190 FLAGFSVAFFAFSGFEAIASLAEENKN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDD  248 (426)
T ss_dssp             HHHHHHHHGGGGTTTTHHHHGGGGSSS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHC
T ss_pred             hhhHHHHHHhhcccccccccccccccc-----hhheeecccchhHHHHHHhhhhheeeecccch
Confidence            568889999999999999999999774     68999999999999999999976666555553

...

>TIGR00913 2A0310 amino acid permease (yeast)

Probab=97.10  E-value=0.059  Score=51.29  Aligned_cols=56  Identities=16%  Similarity=0.135  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      +.+...++....|+|.|-......-+|+|||+   |+.+|++..+..++.++|+...+.
T Consensus       196 ~~~~~~~~~~~~~af~G~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~Y~l~~~~  251 (478)
T TIGR00913       196 FKGVCSVFVTAAFSFGGTELVALTAGEAANPR---KSIPRAAKRTFWRILVFYILTLFL  251 (478)
T ss_pred             HHHHHHHHHHHHhhhccHHHHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence            55677889999999999999999999999993   789999999999999999987543

>TIGR00907 2A0304 amino acid permease (GABA permease)

Probab=97.06  E-value=0.028  Score=53.66  Aligned_cols=53  Identities=15%  Similarity=0.083  Sum_probs=42.1

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCG   80 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g   80 (265)
                      +..+.++-...|+|.|-......-+|+|||   +|+.+|++..+..++.+++....
T Consensus       217 ~~~~~~~~~~~fsf~G~e~~~~~a~E~knP---~r~iP~Ai~~s~~i~~~~~~~~~  269 (482)
T TIGR00907       217 FAFLLGLLNPAWSMTGYDGTAHMAEEIENP---EVVGPRAIIGAVAIGIVTGFCFN  269 (482)
T ss_pred             hhhhhhhhhhHHHhcCcchhhHHHHhcCCh---hhhcCHHHHHHHHHHHHHHHHHH
Confidence            345566666789999999999999999999   37899999999887776544433

>TIGR00906 2A0303 cationic amino acid transport permease

Probab=97.02  E-value=0.019  Score=56.05  Aligned_cols=56  Identities=9%  Similarity=0.155  Sum_probs=49.7

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      +.+++.+.....|+|.|-......-+|+|||.   |+.+|++..++.++.++|..+.+.
T Consensus       230 ~~g~l~g~~~~~faf~Gfd~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~  285 (557)
T TIGR00906       230 FTGVLSGAATCFFAFIGFDAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAA  285 (557)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHH
Confidence            34578889999999999999999999999993   689999999999999999988654

>TIGR00908 2A0305 ethanolamine permease

Probab=97.01  E-value=0.022  Score=53.64  Aligned_cols=55  Identities=5%  Similarity=-0.077  Sum_probs=47.3

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT   81 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~   81 (265)
                      +...+.++....|+|.|.......-+|+|||+   |+.+|++..+..++.++|...-+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~aeE~k~P~---r~iprai~~s~~~~~~~~~~~~~  244 (442)
T TIGR00908       190 YVGVFAAIPFAIWFFLAVEGVAMAAEETKNPK---RDIPRGLIGAILTLLALAAGILV  244 (442)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence            34677888889999999999999999999993   68999999999999888877644

The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.

>TIGR01773 GABAperm gamma-aminobutyrate permease

Probab=96.91  E-value=0.062  Score=50.82  Aligned_cols=57  Identities=16%  Similarity=0.071  Sum_probs=48.5

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY   84 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY   84 (265)
                      .+.+.++....|+|.|-......-+|+|||+   |+.+|++..+......+|+.......
T Consensus       201 ~~~~~a~~~~~~af~G~e~~~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~  257 (452)
T TIGR01773       201 GAVLLAILVTMFSFMGTEIVTIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVV  257 (452)
T ss_pred             HHHHHHHHHHHHHhccHHHHhHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHe
Confidence            3577899999999999999999999999993   68999998888888888888654433

GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.

>PRK10836 lysine transporter; Provisional

Probab=96.88  E-value=0.076  Score=50.88  Aligned_cols=57  Identities=11%  Similarity=0.047  Sum_probs=47.0

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA   85 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~   85 (265)
                      ..+.+.....|+|.|-......-+|+|||+   |+.+|++..++..+.++|+.....-..
T Consensus       206 ~~~~~~~~~~faf~G~e~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~  262 (489)
T PRK10836        206 AMIGVAMIVGFSFQGTELIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISL  262 (489)
T ss_pred             HHHHHHHHHHHHHccHHHHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHhe
Confidence            344556667799999999999999999993   789999999999999999988654333

>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family

Probab=96.82  E-value=0.092  Score=50.03  Aligned_cols=58  Identities=10%  Similarity=0.072  Sum_probs=49.4

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYA   85 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~   85 (265)
                      ...+..++....|+|.|-......-+|+|| +   |+.+|++..+..++.++|+........
T Consensus       198 ~~~~~~~~~~~~~af~G~e~~~~~a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~~  255 (473)
T TIGR00905       198 FSQVKNTMLVTLWVFIGIEGAVVSSGRAKN-K---SDVGKATVLGTLGALVIYILITLLSLG  255 (473)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            345667888999999999999999999998 3   899999999999999999988665443

This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.

>PRK15238 inner membrane transporter YjeM; Provisional

Probab=96.81  E-value=0.068  Score=51.27  Aligned_cols=53  Identities=17%  Similarity=0.149  Sum_probs=46.3

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT   81 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~   81 (265)
                      ..+.++....|+|.|-......-+|+|||+   |+.+|+...+...+.++|.+..+
T Consensus       212 ~~~~~~~~~~~~f~G~e~~~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~  264 (496)
T PRK15238        212 AVLSFVVFAIFAYGGIEAVGGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIF  264 (496)
T ss_pred             HHHHHHHHHHHHHHhHHHHHHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHH
Confidence            456677888999999999999999999993   68999999999999999998644

>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=96.73  E-value=0.022  Score=54.14  Aligned_cols=177  Identities=12%  Similarity=0.133  Sum_probs=99.5

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCccccccc------
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPGNFLTGF------   99 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~~il~nl------   99 (265)
                      +.-.++=.-.|||.|=..+=-+..|+|||   +|.+|+++..++.+++++|+++=+..+..--   .+.++.+-      
T Consensus       205 ~i~lafysglfa~~GWd~lN~vteEiknP---~ktLP~Ai~isi~lvt~iYil~NvAy~~vls---~~e~l~S~aVav~F  278 (479)
T KOG1287|consen  205 NIALAFYSGLFAFSGWDYLNYVTEEIKNP---RRTLPRAILISIPLVTVIYVLVNVAYFTVLS---PDEILSSDAVAVTF  278 (479)
T ss_pred             HHHHHHHHhhhcccCchhhccchHhhcCc---cccchHHHHHhhHHHHHHHHHhHhheeEecC---HHHhcccchHHHHH
Confidence            45567777889998888888899999999   3789999999999999999998766554431   12222211      


Q ss_pred             CC-CCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCCCccccchhHHHHHHHHHHH
Q 046038          100 GF-YEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVYVIL  178 (265)
Q Consensus       100 ~~-~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~v~~  178 (265)
                      .+ -.+.+. -++-++..++.+.+.--.++..-..+...-    ++ .|+.+-.+.+    .+++. ..+  ...++..+
T Consensus       279 a~~~~G~~~-~~ip~~ValS~~G~~n~~ifs~SR~~~~~a----re-G~LP~~~s~i----~~~~~-TP~--~allf~~~  345 (479)
T KOG1287|consen  279 ADRILGVFA-WAIPFSVALSLIGSLNSVIFSSSRLFYAGA----RE-GHLPAFFSMI----SVRRF-TPR--PALLFSGL  345 (479)
T ss_pred             HHHhccchH-HHHHHHHHHHhhhhhhhHHHHHHHHHHHHH----Hc-cCccHHHHhh----cCCCC-CCh--HHHHHHHH
Confidence            00 001121 122233333333333211111111111110    01 0111000000    00110 011  12333345


Q ss_pred             HHHHHHhcCchHHHHHHhhhhhhhhHHHHHHHHHHHHHhcccc
Q 046038          179 TAVIAMLFPFFNSVIGLLGAIAFWPLTVYFPVEMYISRAKIRK  221 (265)
Q Consensus       179 ~~~iAi~iP~~~~vlslvGs~~~~~l~filP~l~yl~~~~~~~  221 (265)
                      ..++...+.|++.+++.++=.......+.+=+++|+|.++++.
T Consensus       346 ~~i~~~~~~d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~  388 (479)
T KOG1287|consen  346 LSIVLSLIGDFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPL  388 (479)
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence            5555666679999999999888888899999999999887653

>TIGR00911 2A0308 L-type amino acid transporter

Probab=96.63  E-value=0.047  Score=52.42  Aligned_cols=58  Identities=16%  Similarity=0.169  Sum_probs=50.7

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhh
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGY   84 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY   84 (265)
                      ..+...++....|+|.|-......-.|+|||.   |+.+|++..+..++.++|++..+.-.
T Consensus       234 ~~~~~~a~~~~~~af~G~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~  291 (501)
T TIGR00911       234 AGGIVLAFYSGIWAYGGWNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYF  291 (501)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45677889999999999999999999999993   68999999999999999999865443

>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]

Probab=96.60  E-value=0.075  Score=49.90  Aligned_cols=61  Identities=18%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             HHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCC
Q 046038           26 SSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGD   89 (265)
Q Consensus        26 ~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~   89 (265)
                      ....+++...++|.|-......-+|+|||.   |+.+|++..++..+.++|+...+.-....++
T Consensus       202 ~~~~~~~~~~~~f~G~e~~~~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~  262 (466)
T COG0531         202 GILAAILLAFFAFTGFEAIATLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA  262 (466)
T ss_pred             HHHHHHHHHHHHhhcHHHHHHHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence            577889999999999999999999999992   6799999999999999999998877777765

>TIGR00930 2a30 K-Cl cotransporter

Probab=96.60  E-value=0.34  Score=50.40  Aligned_cols=53  Identities=15%  Similarity=0.214  Sum_probs=46.7

Q ss_pred             HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhh
Q 046038           27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTL   82 (265)
Q Consensus        27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~   82 (265)
                      ++..++++.+||.|-.....+-.|+|+|.   +..+++...++.+++++|+++.+.
T Consensus       282 f~~~~ai~F~A~tGi~agan~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~  334 (953)
T TIGR00930       282 FFSLFGIFFPSVTGILAGANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVL  334 (953)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHH
Confidence            55677888889999888888999999993   689999999999999999999763

>TIGR03428 ureacarb_perm permease, urea carboxylase system

Probab=96.45  E-value=0.53  Score=44.89  Aligned_cols=61  Identities=13%  Similarity=-0.057  Sum_probs=46.8

Q ss_pred             HHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038           25 WSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG   88 (265)
Q Consensus        25 ~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG   88 (265)
                      +..+.+.-...|+|.|-.....+-+|+|||+   |+.+|++..+..+..++|...-+......+
T Consensus       213 ~~~~~~~~~~~~~f~G~e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~  273 (475)
T TIGR03428       213 GAFLVSGLMAAYVMVGFGSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAP  273 (475)
T ss_pred             HHHHHHHHHHHHHhcCcchHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence            3455667778899999999999999999993   789999999999887766555444333333

A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.

>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter

Probab=96.32  E-value=0.27  Score=47.42  Aligned_cols=51  Identities=12%  Similarity=-0.006  Sum_probs=41.9

Q ss_pred             HHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhh
Q 046038           27 SLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCG   80 (265)
Q Consensus        27 ~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g   80 (265)
                      ....+..+.|+|.|--.....-+|||||+   |+++|++..+..++.++|....
T Consensus       196 ~~~~~~~~~faf~G~E~~a~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~  246 (507)
T TIGR00910       196 TLVVFVAFIGAYMGVEASASHINELENPG---RDYPLAMILLMIAAICLDAIGG  246 (507)
T ss_pred             HHHHHHHHHHHHhcHHHHHHHHHHccCCc---ccccHHHHHHHHHHHHHHHHHH
Confidence            33444556899999999999999999993   6899999999999898887644

Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009

>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell

Probab=93.60  E-value=0.097  Score=49.86  Aligned_cols=65  Identities=17%  Similarity=0.160  Sum_probs=54.6

Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038           23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK   90 (265)
Q Consensus        23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~   90 (265)
                      .+-+++.++....++|.|-......-+|.|||   +|+.+|+...++....++|+......=...|.+
T Consensus       198 ~~~~~~~~~~~~~~af~G~e~~a~~a~E~k~P---~k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~  262 (478)
T PF00324_consen  198 GFSGFFAALVFAFFAFVGFESIAILAEEAKNP---RKTIPRATLLSVLRIGVFYVLTSYALTLAVPYD  262 (478)
T ss_pred             chhHHHHhhhhhhcccccccccccccccCCCc---hhhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence            45678899999999999999999999999999   378999999999999999998866544444443

A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane

>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]

Probab=93.15  E-value=1.1  Score=42.37  Aligned_cols=177  Identities=14%  Similarity=0.164  Sum_probs=91.7

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHH-----HHhhhhhhhhccCCCCCcc--cc
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIF-----YMLCGTLGYAAFGDKAPGN--FL   96 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~-----y~~~g~~GY~~fG~~~~~~--il   96 (265)
                      +..++.++-+.+|||++.-.+=---+|-|||+   |..+|+.+.-..=..++     ..+..+.-|-.++++.++=  ++
T Consensus       202 ~~g~~~~~~~v~Faf~GiElvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~SPFV~~f  278 (462)
T COG1113         202 FLGFLSALQIVMFAFGGIELVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDGSPFVTVF  278 (462)
T ss_pred             hHHHHHHHHHHHHHHhhHHHHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCCCcHHHHH
Confidence            33578899999999999877776778999993   56888765544444444     4455777777777755542  22


Q ss_pred             cccCCCCchHHHHHHHHHHHHHHHhhhhhhcccHHHHHHHHhcc-cCCCCccCCCCccccCCCCCccccchhHHHHHHHH
Q 046038           97 TGFGFYEPFWLVDFANMCIVVHLVGAYQVFCQPIFTTVENWCCH-KWPESGFVTKRHPITFPSCGVCYVNMFRVIWRTVY  175 (265)
Q Consensus        97 ~nl~~~~~~~~~~i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~-~~~~~~~i~~~~~~~~p~~~~~~~~~~r~~~r~~~  175 (265)
                      ..+..  | +...+.|..+..+.+.+.==-.+..-+.+..+-.+ .-|+          ...+.++..-...-++...+.
T Consensus       279 ~~iGi--~-~Aa~i~N~VVLtAa~S~~NSglystsRmL~~la~~g~APk----------~~~klsk~gVP~~ai~~s~~~  345 (462)
T COG1113         279 SLIGI--P-FAAGIMNFVVLTAALSALNSGLYSTSRMLYSLAKQGDAPK----------AFAKLSKRGVPVNAILLSAVV  345 (462)
T ss_pred             HHcCC--c-ccccceeEEEeechhhcccccccccchHHHHHhhcCcccH----------hHhhccccCCCHHHHHHHHHH
Confidence            22211  1 22333333333333333211111222222222110 0011          000011111112334677777


Q ss_pred             HHHHHHHHHhcCc--hHHHHHHhhhhhhhhHHHHHHHHHHHHHhc
Q 046038          176 VILTAVIAMLFPF--FNSVIGLLGAIAFWPLTVYFPVEMYISRAK  218 (265)
Q Consensus       176 v~~~~~iAi~iP~--~~~vlslvGs~~~~~l~filP~l~yl~~~~  218 (265)
                      ..++.++....|.  |+.+.+..+...  .....+=.+.|+|++|
T Consensus       346 ~~~~V~Lny~~P~~vF~~v~s~s~~~~--l~vW~~I~~s~l~~rk  388 (462)
T COG1113         346 LLLGVVLNYILPEKVFELVTSSSGLGL--LFVWLMILLSQLKLRK  388 (462)
T ss_pred             HHHHHHHHhhcchhHHHHHHHHHHHHH--HHHHHHHHHHHHHHHh
Confidence            7888889999992  444444433322  3344445567888776

>TIGR00912 2A0309 spore germination protein (amino acid permease)

Probab=92.28  E-value=2.3  Score=38.72  Aligned_cols=58  Identities=17%  Similarity=0.330  Sum_probs=48.5

Q ss_pred             HHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCCCCc
Q 046038           32 GNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDKAPG   93 (265)
Q Consensus        32 gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~~~~   93 (265)
                      ....++|.+.....-...++|+|    ++.+|+...+..++.++|...-+..-..+|.+..+
T Consensus       186 ~~~~~~f~g~~i~~~~~~~~~~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~~~~  243 (359)
T TIGR00912       186 PVVTFAFGEIEIFFLLFPLLSKK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGNVTK  243 (359)
T ss_pred             HHhhhhhHHHHHHHHHHHHhCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHHHhh
Confidence            36788888877778888889887    78999999999999999999888888888865443

This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.

>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]

Probab=90.40  E-value=1.7  Score=42.43  Aligned_cols=176  Identities=12%  Similarity=0.049  Sum_probs=99.1

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhh-hhhhccCCC--CCcccccccC
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGT-LGYAAFGDK--APGNFLTGFG  100 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~-~GY~~fG~~--~~~~il~nl~  100 (265)
                      +.+++.++-+..|+|.|--.+-.--+|-|||   +|..|++...++..+.++|+...+ +|-..=-++  ..++....-|
T Consensus       231 f~Gv~s~~~~~~fsf~G~e~va~~a~E~kNP---~k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~sp  307 (554)
T KOG1286|consen  231 FKGVLSGAATAFFSFIGFELVATTAEEAKNP---RKAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASP  307 (554)
T ss_pred             cceeeHHHHHHHHHHhhHHHHHHHHHhccCC---cccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccH
Confidence            4557789999999999988888888999999   378999999999999999999875 343333333  3322211111


Q ss_pred             CC---CchHHHH---HHHHHHHHHHHhhhhhhcccHHHHHHHHhcccCCCCccCCCCccccCCCC-CccccchhHHHHHH
Q 046038          101 FY---EPFWLVD---FANMCIVVHLVGAYQVFCQPIFTTVENWCCHKWPESGFVTKRHPITFPSC-GVCYVNMFRVIWRT  173 (265)
Q Consensus       101 ~~---~~~~~~~---i~~i~~~l~~l~s~pl~~~p~~~~ie~~~~~~~~~~~~i~~~~~~~~p~~-~~~~~~~~r~~~r~  173 (265)
                      ..   +..+...   +.++..++.++.+---..++.-+.+..+-...+             .|++ ++-.++-.-+.-..
T Consensus       308 F~iai~~~~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~amA~~G~-------------~Pk~f~~v~~~g~P~~a~~  374 (554)
T KOG1286|consen  308 FVIAIGNAGAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLYALAKDGL-------------APKFFARVDRRGVPLVAVL  374 (554)
T ss_pred             HHHHHhccCccccchhhhHHHHHHHHHHHHHHhHHhHHHHHHHHhcCC-------------cchHHhhcCCCCCchhHHH
Confidence            00   0011222   556666666655554455555555555532110             1110 00000101122223


Q ss_pred             HHHHHHHHHHHhcCc-----hHHHHHHhhhhhhhhHHHHHHHHHHHHHh
Q 046038          174 VYVILTAVIAMLFPF-----FNSVIGLLGAIAFWPLTVYFPVEMYISRA  217 (265)
Q Consensus       174 ~~v~~~~~iAi~iP~-----~~~vlslvGs~~~~~l~filP~l~yl~~~  217 (265)
                      +.-++..+.++....     ++.++++.|--+  .+++.+=++.|+.++
T Consensus       375 v~~~~~~l~~~~~~~~~~~~f~~L~~~~si~t--l~~w~~i~~~~i~~R  421 (554)
T KOG1286|consen  375 VSGLFGALAALNFSLGAATVFNWLVNLSSIGT--LFAWTLVALSHLRFR  421 (554)
T ss_pred             HHHHHHHHHHHHhccccchHHHHHHHHHhHHH--HHHHHHHHHHHeeee
Confidence            333444455554443     688888876544  556666666666554

>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]

Probab=82.99  E-value=2.7  Score=36.36  Aligned_cols=78  Identities=13%  Similarity=0.220  Sum_probs=50.0

Q ss_pred             HHHHHHHHHHHhcCchHHHHHHh---------hhhhhhhHHHHHHHHHHHHHhccc-----ccchhHHHHHHHHHHHHHH
Q 046038          174 VYVILTAVIAMLFPFFNSVIGLL---------GAIAFWPLTVYFPVEMYISRAKIR-----KFSVTWMWLQVLSWTCFIV  239 (265)
Q Consensus       174 ~~v~~~~~iAi~iP~~~~vlslv---------Gs~~~~~l~filP~l~yl~~~~~~-----~~~~~~~~~~~ii~~g~~~  239 (265)
                      ...+..+++|..++.+|-++...         ||.++--|+++=    |..+-+.+     ....++|+-|+++++|+++
T Consensus       161 ~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~ll  236 (262)
T KOG4812|consen  161 GIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLLL  236 (262)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHHH
Confidence            34556777888888888877765         777777777665    55443321     1122455667888999999


Q ss_pred             HHHHHHH--HHHHHHHhc
Q 046038          240 TLLAAAG--SIQGLVKDL  255 (265)
Q Consensus       240 ~v~Gty~--si~~ii~~~  255 (265)
                      .+-|++.  .|+.+-+.+
T Consensus       237 ~lr~~i~YikVrrm~~~~  254 (262)
T KOG4812|consen  237 FLRGFINYIKVRRMEEKY  254 (262)
T ss_pred             HHHHHHhHHHHhhHHHHH
Confidence            8888765  344444443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	265
3l1l_A	445	Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC	98.25
4djk_A	511	Probable glutamate/gamma-aminobutyrate antiporter;	97.83
3gia_A	444	Uncharacterized protein MJ0609; membrane protein,	97.81

>3l1l_A Arginine/agmatine antiporter; TCDB 2.A.3.2.5, ADIC, Arg-bound, amino-acid transport, cell inner membrane, cell membrane, membrane; HET: ARG BNG; 3.00A {Escherichia coli} PDB: 3h5m_A* 3h6b_A 3lrb_A 3lrc_A 3ob6_A* 3hqk_A 3ncy_A

Probab=98.25  E-value=1.5e-05  Score=73.10  Aligned_cols=64  Identities=11%  Similarity=0.120  Sum_probs=54.0

Q ss_pred             HHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038           24 IWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK   90 (265)
Q Consensus        24 ~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~   90 (265)
                      ...++.++....|+|.|.......-+|+|||   +|+.+|++..+..++.++|+...+......+.+
T Consensus       190 ~~~~~~~~~~~~~af~G~e~~~~~~~e~k~p---~r~ip~a~~~~~~~~~~~y~~~~~~~~~~~~~~  253 (445)
T 3l1l_A          190 FGAIQSTLNVTLWSFIGVESASVAAGVVKNP---KRNVPIATIGGVLIAAVCYVLSTTAIMGMIPNA  253 (445)
T ss_dssp             ---HHHHHHHHHHTTTTTTHHHHGGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCTT
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHHHHHHhcCc---cccccHHHHHHHHHHHHHHHHHHHHHHhcCCHH
Confidence            4567788999999999999999999999999   378999999999999999999987766666543

>4djk_A Probable glutamate/gamma-aminobutyrate antiporter; LEUT, glutamate-GABA antiporter, transport protein; 3.10A {Escherichia coli} PDB: 4dji_A

Probab=97.83  E-value=0.001  Score=62.00  Aligned_cols=60  Identities=7%  Similarity=-0.042  Sum_probs=51.7

Q ss_pred             HHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccCCC
Q 046038           28 LQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFGDK   90 (265)
Q Consensus        28 ~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG~~   90 (265)
                      +.++...+|+|.|.......-+|+|||+   |+.+|++..++.++.++|+...+.-....+++
T Consensus       204 ~~~~~~~~~a~~G~e~~~~~a~E~k~P~---k~ip~ai~~~~~~~~~~y~~~~~~~~~~~~~~  263 (511)
T 4djk_A          204 LVVFVAFILSYMGVEASATHVNEMSNPG---RDYPLAMLLLMVAAICLSSVGGLSIAMVIPGN  263 (511)
T ss_dssp             TTTHHHHHHHHTTGGGGTGGGSSSSCCT---TTHHHHHHHHHHHHHHHHHHHHHHHHTTSCTT
T ss_pred             HHHHHHHHHHHhhHHHHHHHHHhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHeecCHh
Confidence            3457778999999999999999999993   68999999999999999999987766666554

>3gia_A Uncharacterized protein MJ0609; membrane protein, transporter, cell membrane, membrane, transmembrane, transport protein; HET: D10 BCN; 2.32A {Methanocaldococcus jannaschii} PDB: 3gi9_C* 3gi8_C

Probab=97.81  E-value=0.00048  Score=63.07  Aligned_cols=63  Identities=14%  Similarity=0.188  Sum_probs=53.3

Q ss_pred             HHHHHHHHHHHHHHHhcCccchhhhhhhhcCCccchhhhhHHHHHHHHHHHHHHHhhhhhhhhccC
Q 046038           23 KIWSSLQAIGNIAFAYAYSIVLVEIQDTLRSSPPENKVMKRASFVGVSITTIFYMLCGTLGYAAFG   88 (265)
Q Consensus        23 ~~~~~~~~~gi~~Faf~~h~~~~~I~~~mk~P~~~~~~~~~vl~~a~~i~~~~y~~~g~~GY~~fG   88 (265)
                      .+.+.+.++....|+|.|.......-+|+|||   +|+.+|++..+..++.++|....+......+
T Consensus       186 g~~~~~~~~~~~~~a~~G~e~~~~~~~e~k~P---~r~ip~ai~~~~~~~~~~y~~~~~~~~~~~~  248 (444)
T 3gia_A          186 AVSGMIFASAIFFLSYMGFGVITNASEHIENP---KKNVPRAIFISILIVMFVYVGVAISAIGNLP  248 (444)
T ss_dssp             HHHHHHHHHHHGGGGGTHHHHHHTTGGGBSSH---HHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred             chHHHHHHHHHHHHHHHhHHHHHHHHHHccCc---ccchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            34567788889999999999999999999999   2679999999999999999988766554444

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00