Citrus Sinensis ID: 046048

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410----

MSSVGNGEDKYVHGEDPYFDGLLRGDGTIKHQASNPIFRGSANSGKIYRSTSDIGKTRHKTLDLDVTEKPLDTTFEDSVSDINLEPFGPSSPGIFSKIAKRSSFSFPSGDLSNSIKEPIPRNLKALEQYGTSDLMLPAFSKSYSTKRTKPNLSKIPLPQSAASFYNGFSPQMEIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA

ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEccccccHHHHHHHHHHHHHHccccccccEEEccEEEcccHHHHHHHHHHHHHHHcccccccccccccHHHHccccccccEEEEEEcccccccHHHccccEEEEEcccccccHHHHHHHHHHHccccccccHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHcccccccHHHHHHccccccccc

ccccccccccccccccccccccccccccEEccccccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccEEEccccccEEEcccccccccccccccccEEEcccccccccccccccEEEEEEccccccccccccccHHHHcccccccccccccHHHHHHHHHHHHHHHHHHHccccccEEEEEccccccHHHHHHHHHHHHHHHcccccccEEEEEEEEccHHHcccHHHHHHHHHHccccHHHEEEEccccHHHccccccEEEEEEEcccccccHHHHHHHHEEEEcccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHEEccccccccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHccccccHHHHHHHHHHHHccc

mssvgngedkyvhgedpyfdgllrgdgtikhqasnpifrgsansgkiyrstsdigktrhktldldvtekpldttfedsvsdinlepfgpsspgifskiakrssfsfpsgdlsnsikepiPRNLKALEQygtsdlmlpafsksystkrtkpnlskiplpqsaasfyngfspqMEIVESCESINRLNSYLKARkdevsagvpgrLLHVVIgqdvcdvgslASTFMYAFYLNLVQEnelfctvpvinmkradlNTRAELKWLLGScqidlsslifvdeidlsYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNcrkdcscctvvaenfaltspqilagqGFSRILLAGILLdtgnltntrctskDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA

mssvgngedkyvhgeDPYFDGLLRGDGTIKHQasnpifrgsansgkiyrstsdigktrhktldldvtekpldttfedsvsdinlepfgpsSPGIFSKIAKRSSFsfpsgdlsnsikepipRNLKALEQYGTSDLMLPAFSKSYSTKRTKPNLSKIPLPQSAASFYNGFSPQMEIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA

****************PYFDGLLRGDGTI**************************************************************************************************************************************FYNGFSPQMEIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKW***

************HGEDPYFDGLLRGDGTIKHQA*********************************************************************************************************************************************************YLK*RKDE*S*GVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA

*********KYVHGEDPYFDGLLRGDGTIKHQASNPIFRG****************TRHKTLDLDVTEKPLDTTFEDSVSDINLEPFGPSSPGIFSKIAKRSSFSFPSGDLSNSIKEPIPRNLKALEQYGTSDLMLPAFSKSYSTKRTKPNLSKIPLPQSAASFYNGFSPQMEIVESCESINRLNSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDCSCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

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no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		414	2.2.26 [Sep-21-2011]
Q5E9Y6		453	Protein prune homolog OS=	yes	no	0.490	0.448	0.354	1e-22
Q86TP1		453	Protein prune homolog OS=	yes	no	0.497	0.454	0.359	9e-22
Q8BIW1		454	Protein prune homolog OS=	yes	no	0.497	0.453	0.350	2e-21
Q6AYG3		454	Protein prune homolog OS=	yes	no	0.497	0.453	0.346	2e-21
Q8WUY3		3088	Protein prune homolog 2 O	no	no	0.495	0.066	0.254	2e-14
Q52KR3		3084	Protein prune homolog 2 O	no	no	0.400	0.053	0.272	6e-13
O14094		384	Putative exopolyphosphata	yes	no	0.487	0.526	0.246	2e-06

>sp\|Q5E9Y6\|PRUNE_BOVIN Protein prune homolog OS=Bos taurus GN=PRUNE PE=2 SV=1	Back alignment and function desciption

 Score =  107 bits (268), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 82/231 (35%), Positives = 116/231 (50%), Gaps = 28/231 (12%)

Query: 201 GRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQE-NELFCTVPVINMKRADLNTRAELKWL 259
            R +HVV+G + CD+ S+ S    AFYL    E  E+F  VPV+N+KR++L  R +  + 
Sbjct: 15  SRPIHVVLGNEACDLDSMVSALALAFYLAKTTEAEEVF--VPVLNIKRSELPLRGDNVFF 72

Query: 260 LGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCR---- 315
           L    I  S LIF DEIDL      G L L+L++ H LP    AL++AV E+ + R    
Sbjct: 73  LQKIHIPESVLIFRDEIDLHALHQAGQLTLILVDHHVLPKSDAALEEAVAEVLDHRPIDQ 132

Query: 316 KDC-----------SCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGN--LTNTRCT 362
           + C           SC T+VAE     +P+IL  Q  + +L   ILLD  N  L   + T
Sbjct: 133 RHCPPCHVSVELVGSCATLVAERILQGAPEILDRQT-AALLHGTILLDCVNMDLKIGKAT 191

Query: 363 SKDKY----MATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFK 409
            KD +    +  L  +   R   N ++  L+   +DVS L    +LRKD K
Sbjct: 192 LKDSHYVEKLEALFPDLPSR---NDIFDSLQKAKFDVSGLTTEQMLRKDQK 239

Phosphodiesterase (PDE) that has higher activity toward cAMP than cGMP, as substrate. Plays a role in cell proliferation, is able to induce cell motility and acts as a negative regulator of NME1.
Bos taurus (taxid: 9913)
EC: 3EC: .EC: 6EC: .EC: 1EC: .EC: 1

>sp\|Q86TP1\|PRUNE_HUMAN Protein prune homolog OS=Homo sapiens GN=PRUNE PE=1 SV=2	Back alignment and function description

>sp\|Q8BIW1\|PRUNE_MOUSE Protein prune homolog OS=Mus musculus GN=Prune PE=2 SV=1	Back alignment and function description

>sp\|Q6AYG3\|PRUNE_RAT Protein prune homolog OS=Rattus norvegicus GN=Prune PE=2 SV=1	Back alignment and function description

>sp\|Q8WUY3\|PRUN2_HUMAN Protein prune homolog 2 OS=Homo sapiens GN=PRUNE2 PE=1 SV=3	Back alignment and function description

>sp\|Q52KR3\|PRUN2_MOUSE Protein prune homolog 2 OS=Mus musculus GN=Prune2 PE=2 SV=2	Back alignment and function description

>sp\|O14094\|PPX1_SCHPO Putative exopolyphosphatase OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=SPAC2F3.11 PE=3 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		414
255572069		576	conserved hypothetical protein [Ricinus	0.966	0.694	0.614	1e-134
224115550		604	predicted protein [Populus trichocarpa]	0.946	0.649	0.577	1e-133
449434196		576	PREDICTED: uncharacterized protein LOC10	0.888	0.638	0.544	1e-115
356544238		526	PREDICTED: protein prune homolog [Glycin	0.884	0.695	0.517	1e-102
296089245		238	unnamed protein product [Vitis vinifera]	0.487	0.848	0.777	3e-86
102139800		676	hypothetical protein MA4_106O17.36 [Musa	0.567	0.347	0.576	5e-79
359484000		1689	PREDICTED: uncharacterized protein LOC10	0.439	0.107	0.700	2e-69
357470713		405	Prune-like protein [Medicago truncatula]	0.690	0.706	0.408	8e-66
224061469		327	predicted protein [Populus trichocarpa]	0.644	0.816	0.401	5e-60
302770673		533	hypothetical protein SELMODRAFT_440571 [	0.608	0.472	0.439	3e-55

>gi\|255572069\|ref\|XP_002526975.1\| conserved hypothetical protein [Ricinus communis] gi\|223533666\|gb\|EEF35402.1\| conserved hypothetical protein [Ricinus communis]	Back alignment and taxonomy information

 Score =  486 bits (1251), Expect = e-134,   Method: Compositional matrix adjust.
 Identities = 261/425 (61%), Positives = 305/425 (71%), Gaps = 25/425 (5%)

Query: 15  EDPYFDGLLRGDGTIKHQASNPIFRGSANSGKIYRSTSDIGKTRHKTLDLDVTEKPLDTT 74
           E+PYF GL RGD   ++Q     F+G+  S  I R+TS+I   R K    D++EK  D+ 
Sbjct: 20  ENPYFTGLRRGDIASRNQTPTLDFQGNDASRNISRTTSEISHARSKDFIQDISEKSNDSL 79

Query: 75  FEDSVSDINLEPFGPSSPGIFSKIAKRSSF--------SFPSGDLS-NSIKEPIPRNLKA 125
            EDSVSDI L P   S+ G  SKI+  S          SF  GD + +S KE  P+  +A
Sbjct: 80  LEDSVSDIVLNPIRQSASGRLSKISSSSFAFSSFQSDTSFELGDDAYDSTKESSPKTSEA 139

Query: 126 LEQYG-TSDLMLPAFSKSYSTKRTKPNLSKIPLPQSAASFYNGFSPQMEIVESCESINRL 184
            E+    +    P   K +S   +K NLSK+PLPQSAASFYNGFSPQ+EIVES ESI RL
Sbjct: 140 AEECQIVASQTRPVTEKCFSMIHSKQNLSKVPLPQSAASFYNGFSPQVEIVESWESITRL 199

Query: 185 NSYLKARKDEVSAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVIN 244
             YLKAR+++V AGVPG+ LH VIGQDV DVGS+ ST MYAFYLN   E++  CT+PVIN
Sbjct: 200 ILYLKARRNDVRAGVPGKFLHAVIGQDVSDVGSIVSTIMYAFYLNNTLESDQLCTIPVIN 259

Query: 245 MKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEAL 304
           +KR DL++RAELKWLL SCQID SSLI VDEIDLSYY+LFGSLKLVL+NG KLPT+QEAL
Sbjct: 260 IKRTDLSSRAELKWLLDSCQIDGSSLICVDEIDLSYYNLFGSLKLVLLNGDKLPTKQEAL 319

Query: 305 KDAVVEIFNCRK---------------DCSCCTVVAENFALTSPQILAGQGFSRILLAGI 349
           K AVVEIFNCRK               D SCCT++AE FALTSP+ILA QGFSR+LLAGI
Sbjct: 320 KGAVVEIFNCRKDESVYPGVEKITVGEDSSCCTLIAEKFALTSPEILAEQGFSRLLLAGI 379

Query: 350 LLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFK 409
           LLD+GNL+   CT+KDKYMATLLINGAGRFG NG YQ+LRY MYDVSDLKVVDILRKDFK
Sbjct: 380 LLDSGNLSGPHCTTKDKYMATLLINGAGRFGSNGFYQLLRYKMYDVSDLKVVDILRKDFK 439

Query: 410 KWKTA 414
           KW  A
Sbjct: 440 KWARA 444

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|224115550\|ref\|XP_002317063.1\| predicted protein [Populus trichocarpa] gi\|222860128\|gb\|EEE97675.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|449434196\|ref\|XP_004134882.1\| PREDICTED: uncharacterized protein LOC101206974 [Cucumis sativus] gi\|449529443\|ref\|XP_004171709.1\| PREDICTED: uncharacterized protein LOC101231856 [Cucumis sativus]	Back alignment and taxonomy information

>gi\|356544238\|ref\|XP_003540561.1\| PREDICTED: protein prune homolog [Glycine max]	Back alignment and taxonomy information

>gi\|296089245\|emb\|CBI39017.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|102139800\|gb\|ABF69985.1\| hypothetical protein MA4_106O17.36 [Musa acuminata]	Back alignment and taxonomy information

>gi\|359484000\|ref\|XP_003633051.1\| PREDICTED: uncharacterized protein LOC100854333 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357470713\|ref\|XP_003605641.1\| Prune-like protein [Medicago truncatula] gi\|355506696\|gb\|AES87838.1\| Prune-like protein [Medicago truncatula]	Back alignment and taxonomy information

>gi\|224061469\|ref\|XP_002300495.1\| predicted protein [Populus trichocarpa] gi\|222847753\|gb\|EEE85300.1\| predicted protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|302770673\|ref\|XP_002968755.1\| hypothetical protein SELMODRAFT_440571 [Selaginella moellendorffii] gi\|300163260\|gb\|EFJ29871.1\| hypothetical protein SELMODRAFT_440571 [Selaginella moellendorffii]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		414
ZFIN\|ZDB-GENE-100609-1		447	prune "prune homolog (Drosophi	0.536	0.496	0.308	8.7e-18
UNIPROTKB\|Q5E9Y6		453	PRUNE "Protein prune homolog"	0.391	0.357	0.383	1e-16
RGD\|1359521		454	Prune "prune homolog (Drosophi	0.386	0.352	0.377	1.8e-16
UNIPROTKB\|F1SS99		453	PRUNE "Uncharacterized protein	0.388	0.355	0.379	2.3e-16
MGI\|MGI:1925152		454	Prune "prune homolog (Drosophi	0.386	0.352	0.377	3e-16
UNIPROTKB\|E2RTD5		453	PRUNE "Uncharacterized protein	0.388	0.355	0.373	6.6e-16
UNIPROTKB\|Q86TP1		453	PRUNE "Protein prune homolog"	0.386	0.353	0.382	1.9e-15
UNIPROTKB\|H9KZ13		168	LOC100857290 "Uncharacterized	0.359	0.886	0.339	4.2e-14
UNIPROTKB\|E2RN40		3068	PRUNE2 "Uncharacterized protei	0.543	0.073	0.241	7.3e-12
UNIPROTKB\|Q8WUY3		3088	PRUNE2 "Protein prune homolog	0.543	0.072	0.25	2e-11

ZFIN\|ZDB-GENE-100609-1 prune "prune homolog (Drosophila)" [Danio rerio (taxid:7955)]	Back alignment and assigned GO terms

 Score = 240 (89.5 bits), Expect = 8.7e-18, P = 8.7e-18
 Identities = 76/246 (30%), Positives = 121/246 (49%)

Query:   184 LNSYLKARKDEV---SAGVPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTV 240
             + +YL++ +D +   S   PG  LHVV+G + CD+ S+ S   +A++L+   + +    V
Sbjct:     1 MEAYLRSCRDVLKSCSRNSPG--LHVVMGNEACDMDSMVSALTFAYFLSKSLDCKRI-PV 57

Query:   241 PVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTR 300
             PV+N+ RA+   R++  +LL    +    L+F DE+DL        L L L++ + LP+ 
Sbjct:    58 PVLNIPRAEFPLRSDSIFLLRESGLSQDYLLFRDEVDLHGLHKNKQLTLTLVDHNVLPSA 117

Query:   301 QEALKDAVVEIFNCR------KDC--------SCCTVVAENFALTSPQILAGQGFSRILL 346
                L+DAVVE+ +          C        SC T+V E  A  SP +L  Q  +++L 
Sbjct:   118 DSELEDAVVEVIDHHLLQRPSSSCPITVEPVGSCTTLVTERIAQKSPAVL-DQQVAQLLY 176

Query:   347 AGILLDTGNLTNT--RCTSKDKYMATLLINGAGRFGCNG-LYQILRYLMYDVSDLKVVDI 403
               I+LD  N+     + T KD   A  L     +    G L+Q L+   +DVS L    +
Sbjct:   177 GTIILDCVNMAPEAGKVTPKDSQYAIFLEQRFPKLPPRGALFQSLQNAKFDVSGLSTEQM 236

Query:   404 LRKDFK 409
             L KD K
Sbjct:   237 LLKDMK 242

GO:0016787 "hydrolase activity" evidence=IEA

GO:0030145 "manganese ion binding" evidence=IEA

GO:0016462 "pyrophosphatase activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

UNIPROTKB\|Q5E9Y6 PRUNE "Protein prune homolog" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

RGD\|1359521 Prune "prune homolog (Drosophila)" [Rattus norvegicus (taxid:10116)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SS99 PRUNE "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

MGI\|MGI:1925152 Prune "prune homolog (Drosophila)" [Mus musculus (taxid:10090)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RTD5 PRUNE "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TP1 PRUNE "Protein prune homolog" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|H9KZ13 LOC100857290 "Uncharacterized protein" [Gallus gallus (taxid:9031)]	Back alignment and assigned GO terms

UNIPROTKB\|E2RN40 PRUNE2 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]	Back alignment and assigned GO terms

UNIPROTKB\|Q8WUY3 PRUNE2 "Protein prune homolog 2" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	fgenesh4_pg.C_LG_XI001323	hypothetical protein (604 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		414
COG1227		311	COG1227, PPX1, Inorganic pyrophosphatase/exopolyph	9e-05

>gnl\|CDD\|224148 COG1227, PPX1, Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]	Back alignment and domain information

 Score = 43.9 bits (104), Expect = 9e-05
 Identities = 49/211 (23%), Positives = 83/211 (39%), Gaps = 18/211 (8%)

Query: 207 VIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQID 266
           V+G +  D  S+AS  +YA+ LN   E E       + +   +L T   L +        
Sbjct: 6   VVGHENPDTDSIASAIVYAYLLNAYGEFE----AKAVRLGEPNLETAFVLDYFGVEAPKL 61

Query: 267 LSSL------IFVD--EIDLSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRKDC 318
           + S+      I VD  E   S  D+  +  L +I+ H+L     A  +    ++   +  
Sbjct: 62  VESVKGEKKVILVDHNEFQQSVDDIEDAEILGIIDHHRL-----ADFETAAPLYIRNEPV 116

Query: 319 SCCTVVAENFALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGAGR 378
            C + +          I   +  + +LL+ IL DT    +   T  D  +A  L + AG 
Sbjct: 117 GCTSTIVYRL-FKEDGIEIEKEIAGLLLSAILSDTLLFKSPTTTDTDVDIAKELADLAGV 175

Query: 379 FGCNGLYQILRYLMYDVSDLKVVDILRKDFK 409
                  + L     D+S   V ++L+KD K
Sbjct: 176 KDLEKFGKELLKAGTDLSGKSVEELLKKDLK 206

Length = 311

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		414
KOG4129		377	consensus Exopolyphosphatases and related proteins	100.0
PRK05427		308	putative manganese-dependent inorganic pyrophospha	100.0
COG1227		311	PPX1 Inorganic pyrophosphatase/exopolyphosphatase	100.0
PRK14869		546	putative manganese-dependent inorganic pyrophospha	99.9
PRK14538		838	putative bifunctional signaling protein/50S riboso	99.87
COG3887		655	Predicted signaling protein consisting of a modifi	99.86
COG0618		332	Exopolyphosphatase-related proteins [General funct	99.81
PF01368		145	DHH: DHH family; InterPro: IPR001667 This is a dom	99.61
TIGR00644		539	recJ single-stranded-DNA-specific exonuclease RecJ	98.16
cd04597		113	CBS_pair_DRTGG_assoc2 This cd contains two tandem	97.45
COG0608		491	RecJ Single-stranded DNA-specific exonuclease [DNA	96.44
PRK11070		575	ssDNA exonuclease RecJ; Provisional	96.25
COG2404		339	Predicted phosphohydrolase (DHH superfamily) [Gene	87.45
PF02724		622	CDC45: CDC45-like protein; InterPro: IPR003874 CDC	81.43

>KOG4129 consensus Exopolyphosphatases and related proteins [Energy production and conversion]	Back alignment and domain information

Probab=100.00  E-value=1.7e-43  Score=349.51  Aligned_cols=228  Identities=29%  Similarity=0.476  Sum_probs=195.3

Q ss_pred             HHHHHHhhhhhhcCC-CCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCCCCceEEEEeeecccccccCcHHHHHHHHHC
Q 046048          185 NSYLKARKDEVSAGV-PGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSC  263 (414)
Q Consensus       185 ~~fL~~~k~~~~a~~-~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~  263 (414)
                      .+||..++..+.... .+.++++|+||++||+||++|||+|||++.+..+ ....++|++||||.++.+++|+.++++++
T Consensus         2 lrfl~~~r~~l~ksl~~~~~lhiv~GNEScDLDS~iSaltyAy~l~~~~~-~e~~~vPilnIpR~el~lr~ei~~vl~kl   80 (377)
T KOG4129|consen    2 LRFLQKARFQLNKSLILHGKLHIVMGNESCDLDSFISALTYAYCLDKVHR-KEVFMVPILNIPRFELNLRTEIFYVLEKL   80 (377)
T ss_pred             hhHHHHHHHHHHHhhhcCCceEEEeCCccccHHHHHHHHHHHHHHHHhcc-CCceEEEEeccccccCCcchhHHHHHHHc
Confidence            356666655543322 2356999999999999999999999999988754 35689999999999999999999999999


Q ss_pred             CCCCCCcccccccccccccccCCceEEEEeCCCCCcchHhhh-cCceEEEccCC---------------cCCHHHHHHHH
Q 046048          264 QIDLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALK-DAVVEIFNCRK---------------DCSCCTVVAEN  327 (414)
Q Consensus       264 ~I~~~~LIF~dD~~l~~l~~~~~~~vILVDHh~l~~~~~~l~-~~Vv~IIDHH~---------------vGSc~TLVae~  327 (414)
                      +|.++.++|.||++...++..++++++|||||.++..+..+. ..+..|||||+               .|||||||+++
T Consensus        81 ~Ise~~l~FrdDI~~~~~~~~g~l~~~LVDhn~l~~~d~~~e~~~i~~IiDhhp~e~~~~~a~~~~Ie~~gScsTLV~~y  160 (377)
T KOG4129|consen   81 HISESALIFRDDIELLELNISGKLKLYLVDHNVLPSKDLVNEIAVIEGIIDHHPDEDKHLPACPRIIELSGSCSTLVSRY  160 (377)
T ss_pred             CCChHHeeehhhhhcccccccCCceEEEecCCCCccccccccccceeeeeccCcccccCCCccceeEEeecchHHHHHHH
Confidence            999999999999988777777889999999999996544443 45677889986               88999999999


Q ss_pred             HHhcCCCccccHH--HHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHhhcCCCCCHHHH
Q 046048          328 FALTSPQILAGQG--FSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGA--GRFGCNGLYQILRYLMYDVSDLKVVDI  403 (414)
Q Consensus       328 i~~~~~e~~i~~~--iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ga--~~~~~~~lf~~L~~AK~Dis~LS~~dl  403 (414)
                      |.+..++. .+..  +|.+|+++|++||+||+..++++.|.++...|+...  +.+.|+++|++|+.||+|++|||++|+
T Consensus       161 ~l~~~~~~-~~~~~n~A~LL~g~ILiDt~nm~~ek~s~kd~~~v~kLe~~~p~~l~~r~~~fd~Lk~ak~d~sgls~~~i  239 (377)
T KOG4129|consen  161 ILEELQEL-NTRQANLARLLLGPILIDTGNMRKEKTSPKDVEIVKKLEELFPVKLPERSEFFDELKSAKFDISGLSTDDI  239 (377)
T ss_pred             HHhhcchh-hhHHHHHHHHhhcceEEeccccccccCChhHHHHHHHHHHHcCCCchhHHHHHHHHHHhhcccccCcHHHH
Confidence            98876554 3343  999999999999999998899999999999997764  467899999999999999999999999


Q ss_pred             HHccccccccC
Q 046048          404 LRKDFKKWKTA  414 (414)
Q Consensus       404 LrkDYK~f~~g  414 (414)
                      ||||||+|..+
T Consensus       240 LrKD~K~~~~~  250 (377)
T KOG4129|consen  240 LRKDLKQFHYD  250 (377)
T ss_pred             HHHHHHHhccC
Confidence            99999999753

>PRK05427 putative manganese-dependent inorganic pyrophosphatase; Provisional	Back alignment and domain information

>COG1227 PPX1 Inorganic pyrophosphatase/exopolyphosphatase [Energy production and conversion]	Back alignment and domain information

>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional	Back alignment and domain information

>PRK14538 putative bifunctional signaling protein/50S ribosomal protein L9; Provisional	Back alignment and domain information

>COG3887 Predicted signaling protein consisting of a modified GGDEF domain and a DHH domain [Signal transduction mechanisms]	Back alignment and domain information

>COG0618 Exopolyphosphatase-related proteins [General function prediction only]	Back alignment and domain information

>PF01368 DHH: DHH family; InterPro: IPR001667 This is a domain of predicted phosphoesterases that includes Drosophila prune protein and bacterial RecJ exonuclease []	Back alignment and domain information

>TIGR00644 recJ single-stranded-DNA-specific exonuclease RecJ	Back alignment and domain information

>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream	Back alignment and domain information

>COG0608 RecJ Single-stranded DNA-specific exonuclease [DNA replication, recombination, and repair]	Back alignment and domain information

>PRK11070 ssDNA exonuclease RecJ; Provisional	Back alignment and domain information

>COG2404 Predicted phosphohydrolase (DHH superfamily) [General function prediction only]	Back alignment and domain information

>PF02724 CDC45: CDC45-like protein; InterPro: IPR003874 CDC45 is an essential gene required for initiation of DNA replication in Saccharomyces cerevisiae (cell division control protein 45), forming a complex with MCM5/CDC46	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		414
2qb6_A		397	Saccharomyces Cerevisiae Cytosolic Exopolyphosphata		4e-04

>pdb|2QB6|A Chain A, Saccharomyces Cerevisiae Cytosolic Exopolyphosphatase, Sulfate Complex Length = 397

Back alignment and structure

Iteration: 1

Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 50/244 (20%), Positives = 98/244 (40%), Gaps = 36/244 (14%) Query: 203 LLHVVIGQDVCDVGSLASTFMYAFYLNLVQENELF-------CTVPVINMKRADLNTRAE 255 +L + +G + D+ S+AS Y++ + E VP+I++ R DL+ R + Sbjct: 28 VLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRD 87 Query: 256 LKWLLGSCQIDLSSLIFVDEIDLSYYDLFGSLKL--VLINGHKLPTRQEALKDAVVEIFN 313 + ++L +I L F++++ ++ +L L++ + P + D VV I + Sbjct: 88 VMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIID 147 Query: 314 CRKDCS--------------CCTVVAENFALTSPQ--ILAGQGFSRILLAGILLDTGNLT 357 D C+ + N+ Q + +L+ IL+DT N+ Sbjct: 148 HHFDLQKHLDAEPRIVKVSGSCSSLVFNYWYEKLQGDREVVMNIAPLLMGAILIDTSNM- 206 Query: 358 NTRCTSKDKYM----ATLLINGAGRFGCNGL------YQILRYLMYDVSDLKVVDILRKD 407 + DK +L GL Y+ ++ D+ V DIL+KD Sbjct: 207 RRKVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKEIKSRKNDIKGFSVSDILKKD 266 Query: 408 FKKW 411 +K++ Sbjct: 267 YKQF 270

PyMOL of 2qb6

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		414
2qb7_A		397	Exopolyphosphatase; A/B/A structure, DHH family ph	6e-34
2eb0_A		307	Manganese-dependent inorganic pyrophosphatase; DHH	1e-14
2haw_A		309	Manganese-dependent inorganic pyrophosphatase; sub	7e-13
1k20_A		310	Manganese-dependent inorganic pyrophosphatase; fam	7e-11
1wpn_A		188	Manganese-dependent inorganic pyrophosphatase; met	4e-06
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	6e-05

>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A* Length = 397	Back alignment and structure

 Score =  129 bits (326), Expect = 6e-34
 Identities = 50/264 (18%), Positives = 103/264 (39%), Gaps = 37/264 (14%)

Query: 184 LNSYLKARKDEVSAGVP-GRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQENEL------ 236
           +  +L   K    + +    +L + +G +  D+ S+AS   Y++   +  E         
Sbjct: 8   VPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKK 67

Query: 237 -FCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYDL--FGSLKLVLIN 293
               VP+I++ R DL+ R ++ ++L   +I    L F++++     ++     L   L++
Sbjct: 68  GSFIVPIIDIPREDLSLRRDVMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVD 127

Query: 294 GHKLPTRQEALKDAVVEIFNCRKD---------------CSCCTVVAENFA-LTSPQILA 337
            +  P   +   D VV I +   D                SC ++V   +          
Sbjct: 128 NNDTPKNLKNYIDNVVGIIDHHFDLQKHLDAEPRIVKVSGSCSSLVFNYWYEKLQGDREV 187

Query: 338 GQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLL----------INGAGRFGCNGLYQI 387
               + +L+  IL+DT N+   +    DK                ++  G    +  Y+ 
Sbjct: 188 VMNIAPLLMGAILIDTSNMRR-KVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKE 246

Query: 388 LRYLMYDVSDLKVVDILRKDFKKW 411
           ++    D+    V DIL+KD+K++
Sbjct: 247 IKSRKNDIKGFSVSDILKKDYKQF 270

PyMOL of 2qb7

>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii} Length = 307	Back alignment and structure

>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A* Length = 309	Back alignment and structure

>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A Length = 310	Back alignment and structure

>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1 Length = 188	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		414
2qb7_A		397	Exopolyphosphatase; A/B/A structure, DHH family ph	100.0
2haw_A		309	Manganese-dependent inorganic pyrophosphatase; sub	100.0
1k20_A		310	Manganese-dependent inorganic pyrophosphatase; fam	100.0
2eb0_A		307	Manganese-dependent inorganic pyrophosphatase; DHH	100.0
1wpn_A		188	Manganese-dependent inorganic pyrophosphatase; met	99.97
3dev_A		320	SH1221; alpha-beta protein., structural genomics,	99.93
3dma_A		343	Exopolyphosphatase-related protein; structural gen	99.91
2zxr_A		666	Single-stranded DNA specific exonuclease RECJ; DNA	98.92

>2qb7_A Exopolyphosphatase; A/B/A structure, DHH family phosphatase, hydrolase; 1.60A {Saccharomyces cerevisiae} PDB: 2qb6_A 2qb8_A*	Back alignment and structure

Probab=100.00  E-value=4.7e-39  Score=327.23  Aligned_cols=228  Identities=21%  Similarity=0.364  Sum_probs=187.9

Q ss_pred             HHHHHHHhhhhhhcC-CCCcceEEEeCCCCCChhHHHHHHHHHHHHHhcCC-------CCceEEEEeeecccccccCcHH
Q 046048          184 LNSYLKARKDEVSAG-VPGRLLHVVIGQDVCDVGSLASTFMYAFYLNLVQE-------NELFCTVPVINMKRADLNTRAE  255 (414)
Q Consensus       184 L~~fL~~~k~~~~a~-~~~~~~ivViGHespDlDSIgSAIalA~~L~~~g~-------~~~~~~vPvinmpr~dl~lr~E  255 (414)
                      |++||+++|+++.+. .++...++|+||++||+|||||||||++++++.|+       .....++|++|+||.+..+++|
T Consensus         8 l~~fl~~~~~~l~~~~~~~~~~iiV~gH~~pD~DaigSalala~~l~~~gk~~~~~~~~~~~~~v~v~~~~r~~~~~~~e   87 (397)
T 2qb7_A            8 VPEFLAHLKSLPISKIASNDVLTICVGNESADMDSIASAITYSYCQYIYNEGTYSEEKKKGSFIVPIIDIPREDLSLRRD   87 (397)
T ss_dssp             HHHHHHHHHHSCHHHHSBTTEEEEEECCTTCCHHHHHHHHHHHHHHHHHHHSGGGSSSCCCCCCEEECSSCGGGGGGCHH
T ss_pred             HHHHHHHHHHHHhhhccCCCCeEEEeCCCCCCHHHHHHHHHHHHHHHhcCCccccccccCCccEEEEEcccccccccCHH
Confidence            899999999888755 25567899999999999999999999999988762       0022468999999988899999


Q ss_pred             HHHHHHHCCCCCCCcccccccc--cccccccCCceEEEEeCCCCCcchHhhhcCceEEEccCC---------------cC
Q 046048          256 LKWLLGSCQIDLSSLIFVDEID--LSYYDLFGSLKLVLINGHKLPTRQEALKDAVVEIFNCRK---------------DC  318 (414)
Q Consensus       256 ~~~lL~~~~I~~~~LIF~dD~~--l~~l~~~~~~~vILVDHh~l~~~~~~l~~~Vv~IIDHH~---------------vG  318 (414)
                      +.++|..++++.+.++|.+++.  +..+.......+||||||........+...++.|||||+               +|
T Consensus        88 ~~~~L~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~vilVD~~~~~r~~~~~~~~~~~iIDHH~~~~~~~~~~~~~i~p~g  167 (397)
T 2qb7_A           88 VMYVLEKLKIKEEELFFIEDLKSLKQNVSQGTELNSYLVDNNDTPKNLKNYIDNVVGIIDHHFDLQKHLDAEPRIVKVSG  167 (397)
T ss_dssp             HHHHHHHTTCCGGGSCCHHHHHHHHHHSCTTCEEEEEEESCSSCCGGGTTTCCEEEEEEECSCCCCCCTTCSSEEECCCS
T ss_pred             HHHHHHHcCCChhhcccHHHHHHHHHhhcccCCCeEEEecCCCcccCcccccccEEEEEcCCCCCCCCCCCCccEEeecc
Confidence            9999999999988888776652  001111123369999999998754445556889999996               79


Q ss_pred             CHHHHHHHHHHhc-CCCccccHHHHHHHHHHHHHhhCCCCCCCCCHHHHHHHHHHHhhc----------CCCCHHHHHHH
Q 046048          319 SCCTVVAENFALT-SPQILAGQGFSRILLAGILLDTGNLTNTRCTSKDKYMATLLINGA----------GRFGCNGLYQI  387 (414)
Q Consensus       319 Sc~TLVae~i~~~-~~e~~i~~~iAtLLLaGILtDT~NF~~~ktT~~D~~aA~~L~~ga----------~~~~~~~lf~~  387 (414)
                      ||||||++++++. .....+++++|+|||+||++||++|+ .+||++|++||++|.+.+          +..+++++|++
T Consensus       168 St~tlv~~~~~~~~~~~~~i~~~~A~~L~~gI~~DT~~F~-~~tt~~d~~aa~~L~~~~~~~~~~~~~~~g~d~~~~~~~  246 (397)
T 2qb7_A          168 SCSSLVFNYWYEKLQGDREVVMNIAPLLMGAILIDTSNMR-RKVEESDKLAIERCQAVLSGAVNEVSAQGLEDSSEFYKE  246 (397)
T ss_dssp             CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHTTTTT-SSCCHHHHHHHHHHHHHHHCSCSSCCSHHHHHHHHHHHH
T ss_pred             cHHHHHHHHHHHhhhccCCcCHHHHHHHHHHHHHhhcccC-CCCCHHHHHHHHHHHHHhccccccccccCcccHHHHHHH
Confidence            9999999999875 11223678999999999999999999 599999999999997764          13478999999


Q ss_pred             HHHHhhcCCCCCHHHHHHccccccc
Q 046048          388 LRYLMYDVSDLKVVDILRKDFKKWK  412 (414)
Q Consensus       388 L~~AK~Dis~LS~~dlLrkDYK~f~  412 (414)
                      |.++|.|+++++..++|++|||.|.
T Consensus       247 l~~a~~~~~~l~l~~~l~~d~K~~~  271 (397)
T 2qb7_A          247 IKSRKNDIKGFSVSDILKKDYKQFN  271 (397)
T ss_dssp             HHHHHTCCTTCCHHHHHHTTEEEEE
T ss_pred             HHHHhhccccCCHHHHHHHhhhhcc
Confidence            9999999999999999999999996

PyMOL of 2qb7

>2haw_A Manganese-dependent inorganic pyrophosphatase; substrate complex, hydrolase; HET: 1PE PG4; 1.75A {Bacillus subtilis} SCOP: c.107.1.1 PDB: 1k23_A* 1wpm_A* 2iw4_A*	Back alignment and structure

>1k20_A Manganese-dependent inorganic pyrophosphatase; family II ppase, binuclear metal centre, hydrolas; 1.50A {Streptococcus gordonii} SCOP: c.107.1.1 PDB: 1wpp_A 2enx_A* 1i74_A	Back alignment and structure

>2eb0_A Manganese-dependent inorganic pyrophosphatase; DHH domain, DHHA2 domain, structural genomics, NPPSFA; 2.20A {Methanocaldococcus jannaschii}	Back alignment and structure

>1wpn_A Manganese-dependent inorganic pyrophosphatase; metal binding, hydrolase; 1.30A {Bacillus subtilis} SCOP: c.107.1.1	Back alignment and structure

>3dev_A SH1221; alpha-beta protein., structural genomics, PSI-2, protein STR initiative, northeast structural genomics consortium, NESG; 3.10A {Staphylococcus haemolyticus}	Back alignment and structure

>3dma_A Exopolyphosphatase-related protein; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.25A {Bacteroides fragilis}	Back alignment and structure

>2zxr_A Single-stranded DNA specific exonuclease RECJ; DNA repair, hydrolase; 2.15A {Thermus thermophilus} PDB: 2zxo_A 2zxp_A 1ir6_A	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		414
d1k20a_		310	c.107.1.1 (A:) Manganese-dependent inorganic pyrop	2e-11
d1wpna_		187	c.107.1.1 (A:) Manganese-dependent inorganic pyrop	2e-09

>d1k20a_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Streptococcus gordonii [TaxId: 1302]} Length = 310	Back information, alignment and structure


class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Manganese-dependent inorganic pyrophosphatase (family II)
domain: Manganese-dependent inorganic pyrophosphatase (family II)
species: Streptococcus gordonii [TaxId: 1302]

 Score = 62.3 bits (151), Expect = 2e-11
 Identities = 30/226 (13%), Positives = 78/226 (34%), Gaps = 41/226 (18%)

Query: 206 VVIGQDVCDVGSLASTFMYAFYLNLVQENELFCTVPVINMKRADLNTRAELKWLLGSCQI 265
           +V G    D  ++ S++ +A+        +   T  V   +  +     E  ++L    +
Sbjct: 4   LVFGHQNPDSDAIGSSYAFAYLAREAYGLD---TEAVALGEPNE-----ETAFVLDYFGV 55

Query: 266 DLSSLIFVDEIDLSYYDLFGSLKLVLINGHKLPTRQEALKDA-VVEIFNCRKD------- 317
               +I       +     G+ +++L + ++       + +  V  + +  +        
Sbjct: 56  AAPRVI-------TSAKAEGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETAN 108

Query: 318 ---------CSCCTVVAENF---ALTSPQILAGQGFSRILLAGILLDTGNLTNTRCTSKD 365
                     S  ++V   F   ++   + +AG     ++L+G++ DT  L +      D
Sbjct: 109 PLYMRLEPVGSASSIVYRMFKEHSVAVSKEIAG-----LMLSGLISDTLLLKSPTTHPTD 163

Query: 366 KYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKW 411
           K +A  L   A           +     +++     +++  D K +
Sbjct: 164 KAIAPELAELA-GVNLEEYGLAMLKAGTNLASKSAEELIDIDAKTF 208

PyMOL of d1k20a_

>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Bacillus subtilis [TaxId: 1423]} Length = 187	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		414
d1k20a_		310	Manganese-dependent inorganic pyrophosphatase (fam	100.0
d1wpna_		187	Manganese-dependent inorganic pyrophosphatase (fam	99.97
d1ir6a_		385	Exonuclease RecJ {Thermus thermophilus [TaxId: 274	96.46

>d1k20a_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Streptococcus gordonii [TaxId: 1302]}	Back information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: DHH phosphoesterases
superfamily: DHH phosphoesterases
family: Manganese-dependent inorganic pyrophosphatase (family II)
domain: Manganese-dependent inorganic pyrophosphatase (family II)
species: Streptococcus gordonii [TaxId: 1302]

Probab=100.00  E-value=2.6e-39  Score=318.01  Aligned_cols=192  Identities=16%  Similarity=0.193  Sum_probs=162.6

Q ss_pred             eEEEeCCCCCChhHHHHHHHHHHHHHhc-CCCCceEEEEeeecccccccCcHHHHHHHHHCCCCCCCccccccccccccc
Q 046048          204 LHVVIGQDVCDVGSLASTFMYAFYLNLV-QENELFCTVPVINMKRADLNTRAELKWLLGSCQIDLSSLIFVDEIDLSYYD  282 (414)
Q Consensus       204 ~ivViGHespDlDSIgSAIalA~~L~~~-g~~~~~~~vPvinmpr~dl~lr~E~~~lL~~~~I~~~~LIF~dD~~l~~l~  282 (414)
                      .++|+||++||+||||||+||||++++. |..    +.++.     ...+++|..++++.++++.+.+++..+.      
T Consensus         2 kIlV~GH~~pD~DsigSalala~~l~~~~g~~----~~~~~-----~~~~~~e~~~~l~~~~i~~~~li~~~~~------   66 (310)
T d1k20a_           2 KILVFGHQNPDSDAIGSSYAFAYLAREAYGLD----TEAVA-----LGEPNEETAFVLDYFGVAAPRVITSAKA------   66 (310)
T ss_dssp             CEEEECCSSCCHHHHHHHHHHHHHHHHHHCCC----EEECB-----SSCCCHHHHHHHHHHTCCCCCBCSCTGG------
T ss_pred             cEEEECCCCCChHHHHHHHHHHHHHHHhCCCC----eEEEE-----CCCCChHHHHHHHhcCCcchhhhhhhcc------
Confidence            5899999999999999999999998754 432    22222     1246789999999999999888765443      


Q ss_pred             ccCCceEEEEeCCCCCcchHhh-hcCceEEEccCC----------------cCCHHHHHHHHHHhcCCCccccHHHHHHH
Q 046048          283 LFGSLKLVLINGHKLPTRQEAL-KDAVVEIFNCRK----------------DCSCCTVVAENFALTSPQILAGQGFSRIL  345 (414)
Q Consensus       283 ~~~~~~vILVDHh~l~~~~~~l-~~~Vv~IIDHH~----------------vGSc~TLVae~i~~~~~e~~i~~~iAtLL  345 (414)
                       .....++|||||.+.+....+ ..++++|||||+                +|||||||++++++.+.+  +++++|+||
T Consensus        67 -~~~~~vilVDhn~~~~~~~~~~~~~v~~iIDHH~~~~~~~~~~~~~~~~~~gSt~tlV~~~~~~~~~~--i~~~~A~lL  143 (310)
T d1k20a_          67 -EGAEQVILTDHNEFQQSVADIAEVEVYGVVDHHRVANFETANPLYMRLEPVGSASSIVYRMFKEHSVA--VSKEIAGLM  143 (310)
T ss_dssp             -GTCSEEEEESCCCGGGSCTTGGGSEEEEEEECSCCCSCCCSSCCEEEECSSSCHHHHHHHHHHHTTCC--CCHHHHHHH
T ss_pred             -ccCceEEEcCCCChhhhhhhHhhcceEEEEEecccCCccccCceEEEECCcCcHHHHHHHHHHHhCCC--CCHHHHHHH
Confidence             134679999999987654444 456899999994                899999999999887644  688999999


Q ss_pred             HHHHHHhhCCCCCCCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHhhcCCCCCHHHHHHccccccccC
Q 046048          346 LAGILLDTGNLTNTRCTSKDKYMATLLINGAGRFGCNGLYQILRYLMYDVSDLKVVDILRKDFKKWKTA  414 (414)
Q Consensus       346 LaGILtDT~NF~~~ktT~~D~~aA~~L~~ga~~~~~~~lf~~L~~AK~Dis~LS~~dlLrkDYK~f~~g  414 (414)
                      |+||++||+||++++||++|+++|++|.+.+|. ++++|+++|++||+|+++++++|||+||||+|+.|
T Consensus       144 l~gIl~DT~~f~~~~tt~~d~~~a~~L~~~~g~-d~~~~~~~l~~ak~~l~~~s~~~il~~D~K~f~~~  211 (310)
T d1k20a_         144 LSGLISDTLLLKSPTTHPTDKAIAPELAELAGV-NLEEYGLAMLKAGTNLASKSAEELIDIDAKTFELN  211 (310)
T ss_dssp             HHHHHHHHTTTTSTTCCHHHHHHHHHHHHHHTS-CHHHHHHHHHHTTCCCTTSCHHHHTTSSEEEEEET
T ss_pred             hhhHhHhhCcCCCCCCCHHHHHHHHHHHHhccC-CHHHHHHHHHHhcCccccCCHHHHHHHhhhhcccC
Confidence            999999999999999999999999999887765 89999999999999999999999999999999764

PyMOL of d1k20a_

>d1wpna_ c.107.1.1 (A:) Manganese-dependent inorganic pyrophosphatase (family II) {Bacillus subtilis [TaxId: 1423]}	Back information, alignment and structure

>d1ir6a_ c.107.1.2 (A:) Exonuclease RecJ {Thermus thermophilus [TaxId: 274]}	Back information, alignment and structure