Citrus Sinensis ID: 046052

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------32
Protein Sequence
VDDILPSPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKVETPAASEGGGDAKPDPPATA
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHcccccccccccEEEcccccccccccHHHHHHHHHHHccccccccccccccccccccccccccccHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHcHHHHHccccccccccccEEEEEcccccccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHcccccccccHccccHHHcccccccccccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
vddilpspqtydspfpsspppplssdfaspfdpdvdngvndsyndaghdnifvsndpilpppsemmpeegfaFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANiekkkgrkdhdkkpsivviqgpkpgkptdlSRMRQMYMKlknnppshmmppppppakrgkdakdgkdakeekdeknrktstpsaagntpttaakdaaaterspstpakdtaaaentppapakgaaaaenthvpnppkvetpaasegggdakpdppata
Flexible Loop (DISEMBL)
vddilpspqtydspfpsspPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHleekekrekemRNQIIDEAEEYKRafyekrklnvetnkaqnrerekLYMANKEKFHKEVDKHYWKAIAELIPREVANiekkkgrkdhdkkpsivviqgpkpgkptdlSRMRQMYMKLknnppshmmppppppakrgkDAKDGKDakeekdeknrktstpsaagntpttaakdaaaterspstpakdtaaaeNTPPAPAKGAAAAENTHVPNPPKVEtpaasegggdakpdppata
Low Complexity Region (SEG)
VDDILPSPQTYdspfpsspppplssdfaspfdpdVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLeekekrekeMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEkkkgrkdhdkkPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNppshmmppppppakrgkdakdgkdakeekdeknrkTSTPSAAGNtpttaakdaaatERSPSTPAKDtaaaentppapakgaaaaENTHVPNPPKVETPAASEGGGDAKPDPPATA
Disordered region (IsUnstruct)
***************************************************************************************************************************************EKFHKEVDKHYWKAIAELIPREVA***************************************************************************************************************************************************************
Disordered Region (DISOPRED)
**************************************************************************EWR*************************EEYKRAFYEKR*******************************HYWKAIAELI********************************************************************************************************************************************************************
Disordered Region (DISEMBL)
**********************LSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIE***********PSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPS**********************************************************************************NTHVPNPPKVE*******************
Disordered Region (DISPRO)
*********************************************AGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPS****************************************************************************************************************
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
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Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
VDDILPSPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHxxxxxxxxxxxxxxxxxxxxxYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKVETPAASEGGGDAKPDPPATA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	318	2.2.26 [Sep-21-2011]
Q9SKU1	338	Clathrin light chain 1 OS	yes	no	0.842	0.792	0.602	5e-66
Q5Z402	291	Clathrin light chain 2 OS	yes	no	0.581	0.635	0.664	1e-52
O04209	258	Clathrin light chain 2 OS	no	no	0.610	0.751	0.557	7e-52
F4J5M9	258	Clathrin light chain 3 OS	no	no	0.503	0.620	0.625	1e-48
Q7XKE9	301	Clathrin light chain 1 OS	no	no	0.512	0.541	0.606	6e-48
Q6Z3A8	363	Clathrin light chain 3 OS	no	no	0.556	0.487	0.582	2e-44

>sp|Q9SKU1|CLC1_ARATH Clathrin light chain 1 OS=Arabidopsis thaliana GN=At2g20760 PE=2 SV=1

 Score =  251 bits (641), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 168/279 (60%), Positives = 195/279 (69%), Gaps = 11/279 (3%)

Query: 7   SPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMM 66
           SP  Y   F +S P   + DF+SPF+  V++   +       D IF S+ PILP P+EM 
Sbjct: 52  SPNGYG--FGASSP---NHDFSSPFESSVNDANGNGGGSG-GDAIFASDGPILPDPNEMR 105

Query: 67  PEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNRE 126
            EEGF  REWRR N +HLEEKEK+EKEMRNQII EAE++K+AFYEKR   +ETNK  NRE
Sbjct: 106 -EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEDFKKAFYEKRDKTIETNKTDNRE 164

Query: 127 REKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGK 186
           +EKLY AN+EKFHKEVDKHYWKAIAELIPREV NIEKK+G+KD DKKPS+ VIQGPKPGK
Sbjct: 165 KEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGK 224

Query: 187 PTDLSRMRQMYMKLKNNPPSHMMPPPPPP--AKRGKDAKDGKDAKEEKDEKNRKTSTPSA 244
           PTDL RMRQ+++KLK NPP HMMPPPPP   AK GKDAKDGKDAK  KD K+ K      
Sbjct: 225 PTDLGRMRQIFLKLKTNPPPHMMPPPPPAKDAKDGKDAKDGKDAKTGKDGKDAKGGKD-- 282

Query: 245 AGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKG 283
           A +       D   TE    +PAKD +     P A A G
Sbjct: 283 AKDLKDGKPADPKVTEEKRPSPAKDASVETAKPDAAASG 321

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.
Arabidopsis thaliana (taxid: 3702)

>sp|Q5Z402|CLC2_ORYSJ Clathrin light chain 2 OS=Oryza sativa subsp. japonica GN=Os06g0731800 PE=2 SV=1

 Score =  206 bits (525), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/191 (66%), Positives = 151/191 (79%), Gaps = 6/191 (3%)

Query: 44  NDAGHDNIFVS----NDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQII 99
           N + HD+ F +    N P+LPPP++M  +EGF  REWRRQNA+ LEEKEK+EKEMRNQII
Sbjct: 61  NGSLHDDPFAAPDNDNGPVLPPPNQMGADEGFLLREWRRQNAILLEEKEKKEKEMRNQII 120

Query: 100 DEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVA 159
            +A+E+K+AF EKRKLNVET+K QNREREKLY+AN+EKFH   DK YWKAI+ELIP E+A
Sbjct: 121 LDAKEFKKAFVEKRKLNVETSKDQNREREKLYLANQEKFHAGADKQYWKAISELIPHEIA 180

Query: 160 NIEKKKG--RKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAK 217
           NIEK+     KD +KKP IVVIQGPKPGKPTD+SRMRQ+ +KLK+ PP HM PPPPP A 
Sbjct: 181 NIEKRGAKKDKDKEKKPGIVVIQGPKPGKPTDMSRMRQILLKLKHTPPPHMKPPPPPAAA 240

Query: 218 RGKDAKDGKDA 228
            GKD   GKD 
Sbjct: 241 TGKDGAAGKDG 251

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|O04209|CLC2_ARATH Clathrin light chain 2 OS=Arabidopsis thaliana GN=CLC2 PE=1 SV=1

 Score =  204 bits (519), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 117/210 (55%), Positives = 154/210 (73%), Gaps = 16/210 (7%)

Query: 24  SSDFASPFDP--DVDNGVNDSY----NDAG----HDNIFVSND----PILPPPSEMMPEE 69
           ++D  S FD    V++ V+D +    +D G     D IF SN     PILPPPSEM  +E
Sbjct: 28  ATDSFSAFDGSLQVEDSVDDVFAAPSSDYGAYSNGDGIFGSNGDHDGPILPPPSEMESDE 87

Query: 70  GFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREK 129
           GFA REWRRQNA+ LEEKEKREKE+  QII+EA++YK  F++K ++  E NKA NRE+EK
Sbjct: 88  GFALREWRRQNAIQLEEKEKREKELLKQIIEEADQYKEEFHKKIEVTCENNKAANREKEK 147

Query: 130 LYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHD--KKPSIVVIQGPKPGKP 187
           LY+ N+EKF+ E  K+YWKAIAEL+P+EV  IEK++G+K+    KKP++ VIQGPKPGKP
Sbjct: 148 LYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKRRGKKEQQDPKKPTVSVIQGPKPGKP 207

Query: 188 TDLSRMRQMYMKLKNNPPSHMMPPPPPPAK 217
           TDL+RMRQ+ +KLK+NPPSH+     PP++
Sbjct: 208 TDLTRMRQILVKLKHNPPSHLKLTSQPPSE 237

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|F4J5M9|CLC3_ARATH Clathrin light chain 3 OS=Arabidopsis thaliana GN=At3g51890 PE=2 SV=1

 Score =  193 bits (491), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 102/163 (62%), Positives = 122/163 (74%), Gaps = 3/163 (1%)

Query: 54  SNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKR 113
           +ND ILPPPS M  EEGFA REWRR NA+ LEEKEK EKEM  QI++ AE+YK  FY KR
Sbjct: 81  TNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKR 140

Query: 114 KLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKK 173
            + +E NK  NRE+EK ++ N+EKF+ E DK+ WKAIAELIPREV  IE +  +K   K 
Sbjct: 141 NVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKK---KT 197

Query: 174 PSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPA 216
            +I VIQGPKPGKPTDLSRMRQ+  KLK+NPP+HM P  P P+
Sbjct: 198 ATITVIQGPKPGKPTDLSRMRQVLTKLKHNPPTHMKPKLPSPS 240

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XKE9|CLC1_ORYSJ Clathrin light chain 1 OS=Oryza sativa subsp. japonica GN=Os04g0679100 PE=2 SV=1

 Score =  191 bits (485), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 111/183 (60%), Positives = 137/183 (74%), Gaps = 20/183 (10%)

Query: 23  LSSDFA-SPF--DPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQ 79
           +S  F+ SPF  DP++D G                + PILPPP++M  EEG   REWRRQ
Sbjct: 75  VSGGFSPSPFSPDPELDGG----------------DGPILPPPAQMGAEEGILLREWRRQ 118

Query: 80  NAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFH 139
           NA+ LEEKE++EKE+R QI+ EAEE+K+AFYEKR  N ETNK  NREREK+++A +EKFH
Sbjct: 119 NAIVLEEKERKEKELRAQILAEAEEFKKAFYEKRIQNCETNKVHNREREKIFVAGQEKFH 178

Query: 140 KEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMK 199
            E DK YWK+I+ELIP E+A IE K+G+KD DKKPSI VIQGPKPGKPTDLSRMRQ+ +K
Sbjct: 179 AEADKQYWKSISELIPHEIATIE-KRGKKDKDKKPSITVIQGPKPGKPTDLSRMRQILVK 237

Query: 200 LKN 202
           LK+
Sbjct: 238 LKH 240

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q6Z3A8|CLC3_ORYSJ Clathrin light chain 3 OS=Oryza sativa subsp. japonica GN=Os07g0461500 PE=3 SV=1

 Score =  179 bits (455), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 109/187 (58%), Positives = 138/187 (73%), Gaps = 10/187 (5%)

Query: 55  NDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRK 114
           + P+LPPP E M EEG   REWRRQNA+ LEEKE++E+E R +II EA+E+KR+F EKRK
Sbjct: 135 DGPVLPPP-EAMKEEGILRREWRRQNALMLEEKERKERERRGEIIAEADEFKRSFAEKRK 193

Query: 115 LNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHD--- 171
           LN +TN+AQNR+REKL++A +EKFH E +K YWKAIAE++P E+  +EK+  R++     
Sbjct: 194 LNGDTNRAQNRDREKLFLAKQEKFHGEAEKQYWKAIAEMVPHEIPGLEKRGKRREKQSAE 253

Query: 172 -----KKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAK-RGKDAKDG 225
                K+P +VV+QG KPGKPTDLSRMRQ+ MKLK  PP HM PPPP PAK  G D    
Sbjct: 254 ANAKAKQPGVVVVQGTKPGKPTDLSRMRQVLMKLKQTPPPHMAPPPPQPAKDTGGDTDAN 313

Query: 226 KDAKEEK 232
           KD + EK
Sbjct: 314 KDGEAEK 320

Clathrin is the major protein of the polyhedral coat of coated pits and vesicles.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
359496589	375	PREDICTED: clathrin light chain 1-like [	0.883	0.749	0.588	3e-71
388491146	313	unknown [Medicago truncatula]	0.691	0.702	0.663	3e-71
356547018	328	PREDICTED: uncharacterized protein LOC10	0.798	0.774	0.589	1e-69
297836840	331	hypothetical protein ARALYDRAFT_900444 [	0.798	0.767	0.623	3e-69
147832854	322	hypothetical protein VITISV_004099 [Viti	0.757	0.748	0.64	1e-67
224127158	385	predicted protein [Populus trichocarpa]	0.701	0.579	0.659	6e-67
357446521	313	hypothetical protein MTR_2g013220 [Medic	0.691	0.702	0.668	1e-65
255553799	383	conserved hypothetical protein [Ricinus	0.893	0.741	0.554	1e-65
356542145	323	PREDICTED: uncharacterized protein LOC10	0.811	0.798	0.588	8e-65
224125272	324	predicted protein [Populus trichocarpa]	0.830	0.814	0.590	9e-65

>gi|359496589|ref|XP_003635272.1| PREDICTED: clathrin light chain 1-like [Vitis vinifera]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 182/309 (58%), Positives = 213/309 (68%), Gaps = 28/309 (9%)

Query: 1   VDDILPSPQTY---DSPFPSSPPPPLSSD-FASPFDPDVDNGVNDSYN-DAGHDNIFVSN 55
           VD + P P  Y    S     P P  S D F+ P    + NG    Y+  A +++IF S+
Sbjct: 77  VDGVHPLPGMYGFEGSSMADDPNPNFSEDSFSVP----IANGNGKPYDISADNEDIFSSD 132

Query: 56  DPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKL 115
            P+LPPP+EM PEEGF  REWRRQNA+ LEEKEKREKEMRNQII+EAEEYKRAFYEKRK+
Sbjct: 133 GPVLPPPTEMQPEEGFILREWRRQNAIQLEEKEKREKEMRNQIIEEAEEYKRAFYEKRKV 192

Query: 116 NVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPS 175
           N+ETNK  NREREKLY+AN+EKFHKE DK YWKAIAELIP EV NIEKK+G+KD DKKPS
Sbjct: 193 NIETNKTNNREREKLYLANQEKFHKEADKQYWKAIAELIPHEVPNIEKKRGKKDPDKKPS 252

Query: 176 IVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPP---AKRGKDAKDGKDAKEEK 232
           I VIQGPKPGKPTDLSRMR + +KLK+ PP HM+PPPPPP   AK GKDAKDGK+AK+ K
Sbjct: 253 ITVIQGPKPGKPTDLSRMRHILVKLKHTPPPHMLPPPPPPAKDAKDGKDAKDGKNAKDGK 312

Query: 233 DE--------KNRKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGA 284
           D+        K+ K +TP+  G  PTT A   A +  SP TP       E   P  A+  
Sbjct: 313 DKDSKNAKDVKDGKDATPT-TGEAPTTPAAKDATSNGSPDTP-------EQAVPVAAEDQ 364

Query: 285 AAAENTHVP 293
            A E+   P
Sbjct: 365 TATESEAAP 373

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388491146|gb|AFK33639.1| unknown [Medicago truncatula]

 Score =  275 bits (702), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 152/229 (66%), Positives = 176/229 (76%), Gaps = 9/229 (3%)

Query: 51  IFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFY 110
           +FVS+ PILPPP EM  EEG+A REWRRQNA+ L EKEKREKEMR +II+EAEEYK AFY
Sbjct: 94  VFVSDGPILPPPGEMESEEGYALREWRRQNAIELVEKEKREKEMRLKIIEEAEEYKVAFY 153

Query: 111 EKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDH 170
           EKRKLNVETNK QNREREKL++AN+EKFHKE DK YWK IAELIPREVANIEK++G+KD 
Sbjct: 154 EKRKLNVETNKVQNREREKLFVANQEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQ 213

Query: 171 DKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKE 230
           DKKPSI V+QGPKPGKPTDLSRMRQ+ +KLK+ PP HM+PPPP PAK  KDAKDGK    
Sbjct: 214 DKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKDGK---- 269

Query: 231 EKDEKNRKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPA 279
           E   K   ++   A+G+ P   A +  A E     P K+ +A E  P A
Sbjct: 270 ETSSKATGSAAEGASGSQPKDVASNGPAEE-----PQKEASATEEQPAA 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356547018|ref|XP_003541915.1| PREDICTED: uncharacterized protein LOC100808804 [Glycine max]

 Score =  269 bits (688), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 168/285 (58%), Positives = 194/285 (68%), Gaps = 31/285 (10%)

Query: 7   SPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMM 66
           SP  Y   F  S P P   DF SPF+P            A  D  F S+ P+LP PS+M 
Sbjct: 64  SPPVYG--FGISTPNP---DFVSPFEP-----------AAADDTTFSSDGPMLPDPSQMQ 107

Query: 67  PEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNRE 126
            EEG A REWRR NA+HLEEKE REKEMRNQII EAEEYK AFYEKRK+N E NK  NRE
Sbjct: 108 -EEGRARREWRRLNAIHLEEKETREKEMRNQIIKEAEEYKEAFYEKRKVNCEKNKENNRE 166

Query: 127 REKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGK 186
           REK+++AN+EKFHKE   HYWKAIAE+IPREV NIEK++G+K+ + KPS+ VIQGPKPGK
Sbjct: 167 REKIHLANQEKFHKEAHNHYWKAIAEIIPREVPNIEKRRGKKEGENKPSVHVIQGPKPGK 226

Query: 187 PTDLSRMRQMYMKLKNNPPSHMMPPPPPP---AKRGKDAKDGKDAKEEKDEKNRKTSTPS 243
           PTDL+RMRQM +KLK NPPSHMMPPPP     AK GKD KD K+AKE KD+K+ K+STP+
Sbjct: 227 PTDLARMRQMILKLKQNPPSHMMPPPPKEEKDAKEGKDGKDNKNAKEGKDDKDVKSSTPT 286

Query: 244 AAGNTPTTAAKDAAATERSPSTPAKDTAA-AENTPPAPAKGAAAA 287
           A               E  PS+PAKD AA  E   PA  +G   A
Sbjct: 287 AT----------TGVVENKPSSPAKDVAANGEPQDPAIVEGEQVA 321

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297836840|ref|XP_002886302.1| hypothetical protein ARALYDRAFT_900444 [Arabidopsis lyrata subsp. lyrata] gi|297332142|gb|EFH62561.1| hypothetical protein ARALYDRAFT_900444 [Arabidopsis lyrata subsp. lyrata]

 Score =  268 bits (684), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 174/279 (62%), Positives = 202/279 (72%), Gaps = 25/279 (8%)

Query: 7   SPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMM 66
           SP  Y   F +S P   + DF+SPF+    + VND+ N +G D IF S+ PILP P+EM 
Sbjct: 59  SPNGYG--FGASSP---NHDFSSPFE----SSVNDA-NGSG-DAIFASDGPILPDPNEMR 107

Query: 67  PEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNRE 126
            EEGF  REWRR N +HLEEKEK+EKEMRNQII EAEEYK++FYEKR+  +ETNK  NRE
Sbjct: 108 -EEGFQRREWRRLNTIHLEEKEKKEKEMRNQIITEAEEYKKSFYEKREKTIETNKTDNRE 166

Query: 127 REKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGK 186
           +EKLY AN+EKFHKEVDKHYWKAIAELIPREV NIEKK+G+KD DKKPS+ VIQGPKPGK
Sbjct: 167 KEKLYWANQEKFHKEVDKHYWKAIAELIPREVPNIEKKRGKKDPDKKPSVNVIQGPKPGK 226

Query: 187 PTDLSRMRQMYMKLKNNPPSHMMPPPPPP--AKRGKDAKDGKDAKEEKDEKNRKTSTPSA 244
           PTDL RMRQ+++KLK NPP HMMPPPPP   AK GKDAKDGKDAK  KD K+ K   P+ 
Sbjct: 227 PTDLGRMRQIFLKLKTNPPPHMMPPPPPAKDAKDGKDAKDGKDAKAGKDAKDLKDGKPA- 285

Query: 245 AGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKG 283
                     D   TE  P++PAKD +     P A A G
Sbjct: 286 ----------DPKVTEEKPASPAKDASVETAKPDAAASG 314

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147832854|emb|CAN72815.1| hypothetical protein VITISV_004099 [Vitis vinifera]

 Score =  262 bits (670), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/250 (64%), Positives = 185/250 (74%), Gaps = 9/250 (3%)

Query: 1   VDDILPSPQTY---DSPFPSSPPPPLSSD-FASPFDPDVDNGVNDSYN-DAGHDNIFVSN 55
           VD + P P  Y    S     P P  S D F+ P    + NG    Y+  A +++IF S+
Sbjct: 77  VDGVHPLPGMYGFEGSSMADDPNPNFSEDSFSVP----IANGNGKPYDISADNEDIFSSD 132

Query: 56  DPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKL 115
            P+LPPP+EM PEEGF  REWRRQNA+ LEEKEKREKEMRNQII+EAEEYKRAFYEKRK+
Sbjct: 133 GPVLPPPTEMQPEEGFILREWRRQNAIQLEEKEKREKEMRNQIIEEAEEYKRAFYEKRKV 192

Query: 116 NVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPS 175
           N+ETNK  NREREKLY+AN+EKFHKE DK YWKAIAELIP EV NIEKK+G+KD DKKPS
Sbjct: 193 NIETNKTNNREREKLYLANQEKFHKEADKQYWKAIAELIPHEVPNIEKKRGKKDPDKKPS 252

Query: 176 IVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEK 235
           I VIQGPKPGKPTDLSRMR + +KLK+ PP HM+PPPPPPAK  KD KD KD K  KD K
Sbjct: 253 ITVIQGPKPGKPTDLSRMRHILVKLKHTPPPHMLPPPPPPAKDAKDGKDAKDGKNAKDGK 312

Query: 236 NRKTSTPSAA 245
           ++ +      
Sbjct: 313 DKDSKNAQGC 322

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224127158|ref|XP_002329414.1| predicted protein [Populus trichocarpa] gi|222870464|gb|EEF07595.1| predicted protein [Populus trichocarpa]

 Score =  260 bits (665), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 157/238 (65%), Positives = 184/238 (77%), Gaps = 15/238 (6%)

Query: 1   VDDILPSPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILP 60
            +D + S + Y    PS      S++F+SPF+         +    G D +F S+ PILP
Sbjct: 58  FNDNMHSSEGYGFGLPSP-----STEFSSPFE---------TDGGGGGDGVFASDGPILP 103

Query: 61  PPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETN 120
            P EM  E G  FREWRRQNA+HLEEKEKREKEMRNQII+EAEEY RAFYEKR+ N ETN
Sbjct: 104 EPGEMQ-ELGVKFREWRRQNALHLEEKEKREKEMRNQIINEAEEYIRAFYEKRQQNCETN 162

Query: 121 KAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQ 180
           KAQNREREKLY+AN+EKFHKE DKHYWKAIAE+IPREV NI+++ G+K+ DKKPSI+VIQ
Sbjct: 163 KAQNREREKLYLANQEKFHKEADKHYWKAIAEIIPREVPNIKRRGGKKEDDKKPSIMVIQ 222

Query: 181 GPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRK 238
           GPKPGKPTDLSR RQ+++KLK NPP HMMPPPP PAK GKDAKDGKDAK+ KD K+ K
Sbjct: 223 GPKPGKPTDLSRTRQLFLKLKQNPPPHMMPPPPTPAKDGKDAKDGKDAKDGKDAKDGK 280

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357446521|ref|XP_003593538.1| hypothetical protein MTR_2g013220 [Medicago truncatula] gi|355482586|gb|AES63789.1| hypothetical protein MTR_2g013220 [Medicago truncatula]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 153/229 (66%), Positives = 177/229 (77%), Gaps = 9/229 (3%)

Query: 51  IFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFY 110
           +FVS+ PILPPP EM  EEG+A REWRRQNA+ LEEKEKREKEMR +II+EAEEYK AFY
Sbjct: 94  VFVSDGPILPPPGEMESEEGYALREWRRQNAIELEEKEKREKEMRLKIIEEAEEYKVAFY 153

Query: 111 EKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDH 170
           EKRKLNVETNK QNREREKL++AN+EKFHKE DK YWK IAELIPREVANIEK++G+KD 
Sbjct: 154 EKRKLNVETNKVQNREREKLFVANQEKFHKEADKAYWKTIAELIPREVANIEKRRGKKDQ 213

Query: 171 DKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKE 230
           DKKPSI V+QGPKPGKPTDLSRMRQ+ +KLK+ PP HM+PPPP PAK  KDAKDGK    
Sbjct: 214 DKKPSITVVQGPKPGKPTDLSRMRQILLKLKHTPPPHMIPPPPAPAKDAKDAKDGK---- 269

Query: 231 EKDEKNRKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPA 279
           E   K   ++   A+G+ P   A +  A E     P K+ +A E  P A
Sbjct: 270 ETSSKATGSAAEGASGSQPKDVASNGPAEE-----PQKEASATEEQPAA 313

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255553799|ref|XP_002517940.1| conserved hypothetical protein [Ricinus communis] gi|223542922|gb|EEF44458.1| conserved hypothetical protein [Ricinus communis]

 Score =  256 bits (653), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 174/314 (55%), Positives = 205/314 (65%), Gaps = 30/314 (9%)

Query: 2   DDILPSPQTYDSPFPSS----PPPPLSSDFAS-PFDPDV-DNGV---NDSYNDAGHDN-- 50
           D   P+P   D  F S     P  P+  D  + P  PDV   G+   +  Y   G+D+  
Sbjct: 43  DSSFPAPTNQDDDFFSGDHQPPLSPIPDDITNNPHSPDVYGYGMPMQHQEYETNGNDDGA 102

Query: 51  -IFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAF 109
            IF S+ P+LP P+EM  EEG   REWRRQN +HLEEKEKREKEMRNQII EAEEYKRAF
Sbjct: 103 GIFASDGPLLPDPTEMQ-EEGLQRREWRRQNTLHLEEKEKREKEMRNQIISEAEEYKRAF 161

Query: 110 YEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKD 169
           YEKR+LN ETNKAQNREREK+Y+AN+EKFHKE  +HYWKAIAE+IPREV NIE K+G+KD
Sbjct: 162 YEKRQLNCETNKAQNREREKMYLANQEKFHKEAHQHYWKAIAEIIPREVPNIE-KRGKKD 220

Query: 170 HDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPP-------------PA 216
            D+KPSI+V+QGPKPGKPTDLSRMRQ++ KLK NPP HMMPP P               A
Sbjct: 221 PDRKPSILVVQGPKPGKPTDLSRMRQIFAKLKQNPPPHMMPPLPAKDGKDTKEGKDGKTA 280

Query: 217 KRGKDAKDGKDAKEEKDEKNRKTSTPSAAGNTPTTA--AKDAAATERSPSTP-AKDTAAA 273
           K GKD KDGKD K+ K+EK+ K +T             +KDA   + S  T   KD+  A
Sbjct: 281 KEGKDTKDGKDGKDTKEEKDAKDATEGKDSKDAIEGKDSKDATEGKDSKDTADGKDSKDA 340

Query: 274 ENTPPAPAKGAAAA 287
           E     PAK  AAA
Sbjct: 341 EGPTSTPAKDDAAA 354

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356542145|ref|XP_003539531.1| PREDICTED: uncharacterized protein LOC100817703 [Glycine max]

 Score =  253 bits (646), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 167/284 (58%), Positives = 195/284 (68%), Gaps = 26/284 (9%)

Query: 7   SPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMM 66
           SP  Y   F  S P P   D  SPF+P   +           D  F S+ P+LP PS+M 
Sbjct: 62  SPSVYG--FGVSTPNP---DHVSPFEPATAD-----------DTTFTSDGPMLPDPSQMQ 105

Query: 67  PEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNRE 126
            EEG A REWRR NA+HLEEKEKREKEMRNQII EAEEYK AFYEKRK+N E NK  NRE
Sbjct: 106 -EEGHARREWRRLNAIHLEEKEKREKEMRNQIIKEAEEYKEAFYEKRKVNCEKNKENNRE 164

Query: 127 REKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGK 186
           REK+Y+AN+EKFHKE   HYWKAIAE+IPREV NIEK++G+K+ + KPS+ VIQGPKPGK
Sbjct: 165 REKIYLANQEKFHKEAHNHYWKAIAEIIPREVPNIEKRRGKKEAENKPSVHVIQGPKPGK 224

Query: 187 PTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTSTPSA-- 244
           PTDL+RMRQM +KLK NPPSHMMPPPP   K  K+ KD K+AKE KD+K  K+STP+A  
Sbjct: 225 PTDLARMRQMILKLKQNPPSHMMPPPPKEEKDSKEGKDNKNAKEGKDDKGGKSSTPTATT 284

Query: 245 --AGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAA 286
              GN PT+ AKD A     P   A+D A  E    A ++  AA
Sbjct: 285 GVVGNKPTSPAKDVA-----PEGEAQDPAIVEGEQVASSEPKAA 323

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224125272|ref|XP_002329764.1| predicted protein [Populus trichocarpa] gi|222870826|gb|EEF07957.1| predicted protein [Populus trichocarpa]

 Score =  253 bits (645), Expect = 9e-65,   Method: Compositional matrix adjust.
 Identities = 167/283 (59%), Positives = 196/283 (69%), Gaps = 19/283 (6%)

Query: 1   VDDILPSPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILP 60
           VD +  SP  +     + P  P  S F S     V+NG   +  +   D  FVS+ PILP
Sbjct: 49  VDHVSASPDVFGFGSNADPGYPHQSPFGSV---HVENGNGSNGYNGADDGFFVSDGPILP 105

Query: 61  PPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETN 120
           PP+EM PEEGFA REWRRQNA+HLEEKEKREK+MR QII+E EEY R FYEKRKLN+ETN
Sbjct: 106 PPTEMEPEEGFALREWRRQNAMHLEEKEKREKDMRKQIIEEGEEYIRGFYEKRKLNIETN 165

Query: 121 KAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGR--KDHDKKPSIVV 178
            A NREREKLY+AN+EKFHKE DK YWKAIAELIPREV NIEKK+G+  KD DK PSI V
Sbjct: 166 IATNREREKLYLANQEKFHKEADKQYWKAIAELIPREVPNIEKKRGKKDKDQDKMPSITV 225

Query: 179 IQGPKPGKPTDLSRMRQMYMKLKNNPPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRK 238
           IQGPKPGKPTDLSR+R + +KLK+ PP HM+PPPPPP    KDAKDGK+ K+        
Sbjct: 226 IQGPKPGKPTDLSRLRHLLVKLKHTPPPHMIPPPPPP----KDAKDGKEGKD-------A 274

Query: 239 TSTPSAAGNTPTTA--AKDAAATERSPSTPAKDTAAAENTPPA 279
           T+  + +G     A  AK+A A   S +TP +D AAA   P A
Sbjct: 275 TAGATVSGTKGEAAPVAKEATAN-GSSNTPKEDVAAANAQPVA 316

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	318
TAIR|locus:2051472	338	AT2G20760 [Arabidopsis thalian	0.522	0.491	0.622	5.1e-51
TAIR|locus:2061196	258	CLC2 "clathrin light chain 2"	0.487	0.600	0.546	2.8e-41
TAIR|locus:2074378	258	CLC3 "clathrin light chain 3"	0.462	0.569	0.566	2.3e-39

TAIR|locus:2051472 AT2G20760 [Arabidopsis thaliana (taxid:3702)]

 Score = 530 (191.6 bits), Expect = 5.1e-51, P = 5.1e-51
 Identities = 104/167 (62%), Positives = 119/167 (71%)

Query:    37 NGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFREWRRQNAVHLXXXXXXXXXMRN 96
             N  N +   +G D IF S+ PILP P+EM  EEGF  REWRR N +HL         MRN
Sbjct:    76 NDANGNGGGSGGDAIFASDGPILPDPNEMR-EEGFQRREWRRLNTIHLEEKEKKEKEMRN 134

Query:    97 QIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPR 156
             QII EAE++K+AFYEKR   +ETNK  NRE+EKLY AN+EKFHKEVDKHYWKAIAELIPR
Sbjct:   135 QIITEAEDFKKAFYEKRDKTIETNKTDNREKEKLYWANQEKFHKEVDKHYWKAIAELIPR 194

Query:   157 EVANIEXXXXXXXXXXXPSIVVIQGPKPGKPTDLSRMRQMYMKLKNN 203
             EV NIE           PS+ VIQGPKPGKPTDL RMRQ+++KLK N
Sbjct:   195 EVPNIEKKRGKKDPDKKPSVNVIQGPKPGKPTDLGRMRQIFLKLKTN 241

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005622 "intracellular" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0005886 "plasma membrane" evidence=IDA

GO:0005829 "cytosol" evidence=IDA

GO:0006499 "N-terminal protein myristoylation" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0007030 "Golgi organization" evidence=RCA

GO:0007033 "vacuole organization" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

TAIR|locus:2061196 CLC2 "clathrin light chain 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 438 (159.2 bits), Expect = 2.8e-41, P = 2.8e-41
 Identities = 88/161 (54%), Positives = 111/161 (68%)

Query:    49 DNIFVSND----PILPPPSEMMPEEGFAFREWRRQNAVHLXXXXXXXXXMRNQIIDEAEE 104
             D IF SN     PILPPPSEM  +EGFA REWRRQNA+ L         +  QII+EA++
Sbjct:    63 DGIFGSNGDHDGPILPPPSEMESDEGFALREWRRQNAIQLEEKEKREKELLKQIIEEADQ 122

Query:   105 YKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEXX 164
             YK  F++K ++  E NKA NRE+EKLY+ N+EKF+ E  K+YWKAIAEL+P+EV  IE  
Sbjct:   123 YKEEFHKKIEVTCENNKAANREKEKLYLENQEKFYAESSKNYWKAIAELVPKEVPTIEKR 182

Query:   165 XXXXXXXX--XPSIVVIQGPKPGKPTDLSRMRQMYMKLKNN 203
                        P++ VIQGPKPGKPTDL+RMRQ+ +KLK+N
Sbjct:   183 RGKKEQQDPKKPTVSVIQGPKPGKPTDLTRMRQILVKLKHN 223

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005737 "cytoplasm" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

GO:0009504 "cell plate" evidence=IDA

TAIR|locus:2074378 CLC3 "clathrin light chain 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 420 (152.9 bits), Expect = 2.3e-39, P = 2.3e-39
 Identities = 85/150 (56%), Positives = 101/150 (67%)

Query:    54 SNDPILPPPSEMMPEEGFAFREWRRQNAVHLXXXXXXXXXMRNQIIDEAEEYKRAFYEKR 113
             +ND ILPPPS M  EEGFA REWRR NA+ L         M  QI++ AE+YK  FY KR
Sbjct:    81 TNDSILPPPSAMEKEEGFALREWRRLNALRLEEKEKEEKEMVQQILEAAEQYKAEFYSKR 140

Query:   114 KLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEXXXXXXXXXXX 173
              + +E NK  NRE+EK ++ N+EKF+ E DK+ WKAIAELIPREV  IE           
Sbjct:   141 NVTIENNKKLNREKEKFFLENQEKFYAEADKNNWKAIAELIPREVPVIENRGNKKKTA-- 198

Query:   174 PSIVVIQGPKPGKPTDLSRMRQMYMKLKNN 203
              +I VIQGPKPGKPTDLSRMRQ+  KLK+N
Sbjct:   199 -TITVIQGPKPGKPTDLSRMRQVLTKLKHN 227


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.310   0.129   0.379    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      318       210   0.00080  112 3  11 23  0.47    33
                                                     31  0.48    35


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  3
  No. of states in DFA:  572 (61 KB)
  Total size of DFA:  172 KB (2101 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  20.31u 0.13s 20.44t   Elapsed:  00:00:01
  Total cpu time:  20.31u 0.14s 20.45t   Elapsed:  00:00:01
  Start:  Fri May 10 17:42:50 2013   End:  Fri May 10 17:42:51 2013

GO:0005198 "structural molecule activity" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0006886 "intracellular protein transport" evidence=IEA

GO:0016192 "vesicle-mediated transport" evidence=IEA

GO:0030130 "clathrin coat of trans-Golgi network vesicle" evidence=IEA

GO:0030132 "clathrin coat of coated pit" evidence=IEA

GO:0030968 "endoplasmic reticulum unfolded protein response" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9SKU1	CLC1_ARATH	No assigned EC number	0.6021	0.8427	0.7928	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: scaffold_304414.1 annotation not avaliable (331 aa) (Arabidopsis lyrata)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	318
pfam01086	225	pfam01086, Clathrin_lg_ch, Clathrin light chain	7e-08
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	1e-05
PRK12270	1228	PRK12270, kgd, alpha-ketoglutarate decarboxylase;	3e-05
pfam10310	436	pfam10310, DUF2413, Protein of unknown function (D	1e-04
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.001
PRK12323	700	PRK12323, PRK12323, DNA polymerase III subunits ga	0.003
PLN03237	1465	PLN03237, PLN03237, DNA topoisomerase 2; Provision	0.003

>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain

 Score = 52.1 bits (125), Expect = 7e-08
 Identities = 42/189 (22%), Positives = 79/189 (41%), Gaps = 31/189 (16%)

Query: 15  FPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEMMPEEGFAFR 74
           F SS P   +++ A        NG      D         +         +  EE  + R
Sbjct: 62  FESSFPDVDTANEAVAPGG-TINGDGYQEPDDPTSGYASIS-----QADRVEGEEPESIR 115

Query: 75  EWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMAN 134
           +WR +  + +EE+++  ++ + ++I++A++    FYE      E  KAQNR+  + ++A 
Sbjct: 116 KWRERRDLRIEERDEASEKKKEELIEKAQKEIDDFYENYNEKKEKTKAQNRKEAEQFLAE 175

Query: 135 KEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMR 194
           ++ F        W+ +A+L               D + K S       K G+  D SR R
Sbjct: 176 RDDFSS--PGTEWERVAKLC--------------DFNPKGS-------KQGR--DKSRFR 210

Query: 195 QMYMKLKNN 203
           ++ + LK +
Sbjct: 211 EILLSLKGD 219

Length = 225

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 46.8 bits (112), Expect = 1e-05
 Identities = 22/71 (30%), Positives = 27/71 (38%)

Query: 239 TSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKV 298
           T+  +AA    +  A   AA   +   PA   AAA   PP PA  AAAA     P     
Sbjct: 45  TAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPAAAA 104

Query: 299 ETPAASEGGGD 309
               A+    D
Sbjct: 105 AAAPAAAAVED 115

Length = 1228

>gnl|CDD|237030 PRK12270, kgd, alpha-ketoglutarate decarboxylase; Reviewed

 Score = 45.3 bits (108), Expect = 3e-05
 Identities = 19/75 (25%), Positives = 25/75 (33%)

Query: 239 TSTPSAAGNTPTTAAKDAAATERSPSTPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKV 298
            +  +AA      A+  AAA              A   P AP K AAAA     P  P  
Sbjct: 42  AAPTAAAAAAAAAASAPAAAPAAKAPAAPAPAPPAAAAPAAPPKPAAAAAAAAAPAAPPA 101

Query: 299 ETPAASEGGGDAKPD 313
              AA+      + +
Sbjct: 102 AAAAAAPAAAAVEDE 116

Length = 1228

>gnl|CDD|220684 pfam10310, DUF2413, Protein of unknown function (DUF2413)

 Score = 43.2 bits (102), Expect = 1e-04
 Identities = 25/111 (22%), Positives = 40/111 (36%), Gaps = 9/111 (8%)

Query: 210 PPPPPPAKRGKDAKDGKDAKEEKDE--KNRKTSTPSAAGNTPTTAAK-DAAATERSPSTP 266
             P          +D +D  E  DE  ++ K   P      P  A++       +  S P
Sbjct: 16  KKPKKGDASKDSTEDDEDILEFLDELEQSEKAKPP----KKPKEASRPGTPRNPKKSSKP 71

Query: 267 AKDTAAAENTPPA-PAKGAAAAENTHVPNPPKVETPAASEGGGDAKPDPPA 316
            + +AA+    PA P K A +  ++H  +          E   +  PDP A
Sbjct: 72  TESSAASSEEKPAKPRKSAESTRSSHPKSKAPSTESEEEEEPEET-PDPIA 121

This is a family of proteins conserved in fungi. The function is not known. Length = 436

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 40.2 bits (94), Expect = 0.001
 Identities = 25/111 (22%), Positives = 32/111 (28%)

Query: 204 PPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTSTPSAAGNTPTTAAKDAAATERSP 263
           P +         A     A+     +     +      P  A       A   AA  R  
Sbjct: 406 PAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPAPAPAAAPAAAARPA 465

Query: 264 STPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKVETPAASEGGGDAKPDP 314
           +   +  AAA    PA A  AAA        PP  E P        A+PD 
Sbjct: 466 AAGPRPVAAAAAAAPARAAPAAAPAPADDDPPPWEELPPEFASPAPAQPDA 516

Length = 700

>gnl|CDD|237057 PRK12323, PRK12323, DNA polymerase III subunits gamma and tau; Provisional

 Score = 38.7 bits (90), Expect = 0.003
 Identities = 26/111 (23%), Positives = 34/111 (30%), Gaps = 4/111 (3%)

Query: 204 PPSHMMPPPPPPAKRGKDAKDGKDAKEEKDEKNRKTSTPSAAGNTPTTAAKDAAATERSP 263
           P +    P  PPA           A+       R++  P A       +A+         
Sbjct: 392 PAAAAPAPAAPPAAPAAAPAAAAAARAVAAAPARRSPAPEALAAARQASARGPGGAPAPA 451

Query: 264 STPAKDTAAAENTPPAPAKGAAAAENTHVPNPPKVETPAASEGGGDAKPDP 314
             PA   AAA     A  +  AAA        P    PAA+    D  P P
Sbjct: 452 PAPAAAPAAAARPAAAGPRPVAAAA----AAAPARAAPAAAPAPADDDPPP 498

Length = 700

>gnl|CDD|215641 PLN03237, PLN03237, DNA topoisomerase 2; Provisional

 Score = 39.1 bits (91), Expect = 0.003
 Identities = 44/240 (18%), Positives = 71/240 (29%), Gaps = 43/240 (17%)

Query: 111  EKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHYWKAIAELIPREVANIEKKKGRKDH 170
            ++ KLN+E    +    + L++ + +   KE+DK   +       RE       +G    
Sbjct: 1134 DRDKLNIEVEDLKKTTPKSLWLKDLDALEKELDKLDKEDAKAEEAREKLQRAAARGESGA 1193

Query: 171  DKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSHMM-----PPPPPPAKRGKDAKDG 225
             KK   V  Q PK   P   ++        +    S  M          P  R    K  
Sbjct: 1194 AKK---VSRQAPKKPAPKKTTKKASESETTEETYGSSAMETENVAEVVKPKGRAGAKKKA 1250

Query: 226  KDAKEEKDEKN------------RKTSTPSAAGNTPTTAAKDAAATERSPSTPAKDT--- 270
              A +EK+E++               S P+ +     T     A    +   P       
Sbjct: 1251 PAAAKEKEEEDEILDLKDRLAAYNLDSAPAQSAKMEETVKAVPARRAAARKKPLASVSVI 1310

Query: 271  --------------AAAENTPPAPAKGAAAAENTHVPNPPKVETPAASEGGGDAKPDPPA 316
                          + AE       +  AAA      N    + PAA++  G A      
Sbjct: 1311 SDSDDDDDDFAVEVSLAERLKKKGGRKPAAA------NKKAAKPPAAAKKRGPATVQSGQ 1364

Length = 1465

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	318
PF01086	225	Clathrin_lg_ch: Clathrin light chain; InterPro: IP	100.0
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	99.97
KOG4031	216	consensus Vesicle coat protein clathrin, light cha	93.59

>PF01086 Clathrin_lg_ch: Clathrin light chain; InterPro: IPR000996 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment

Probab=100.00  E-value=2.4e-34  Score=261.12  Aligned_cols=114  Identities=38%  Similarity=0.605  Sum_probs=56.4

Q ss_pred             CCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhcccccCC
Q 046052           65 MMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDK  144 (318)
Q Consensus        65 m~~EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~NRe~Ee~FLa~rE~f~~~a~g  144 (318)
                      +..|++++||+||++|+++|++||+++++++++|+++|+++|++||++|+.+|++++++||++|+.||++|+.|  ..+|
T Consensus       106 ~~~E~~e~ireWre~~~~~i~ekD~~e~~kk~e~~~~A~k~lddfY~~~~~k~e~~k~~nr~~ee~fl~~~~~~--~~~~  183 (225)
T PF01086_consen  106 VEEEEPEAIREWREERDKRIEEKDAEEEEKKEEIKEKAKKELDDFYENRNEKKEKNKKQNREEEEEFLAKREEF--LQPG  183 (225)
T ss_dssp             TTTS-TTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTT--------------------
T ss_pred             ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc--CCCC
Confidence            33344999999999999999999999999999999999999999999999999999999999999999999998  7889


Q ss_pred             ChHHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCCCchhHHHHHHHHHhhCC
Q 046052          145 HYWKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNN  203 (318)
Q Consensus       145 t~WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk~kDlSRMRqILLkLK~~  203 (318)
                      |+|+|||+|||+                +++.+     +.  .+|+||||+|||+||++
T Consensus       184 t~WerV~~Lid~----------------~~~~~-----~~--~kD~sRmR~iLl~LK~~  219 (225)
T PF01086_consen  184 TEWERVAKLIDF----------------NPKSS-----KS--GKDVSRMREILLKLKGD  219 (225)
T ss_dssp             -----------------------------------------------------------
T ss_pred             CcHHHHHHHhCC----------------CCCCC-----CC--CCcHHHHHHHHHHhhhh
Confidence            999999999984                11111     22  39999999999999943

These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents clathrin light chains, which are more divergent in sequence than the heavy chains []. In higher eukaryotes, two genes encode distinct but related light chains, each of which can yield two separate forms via alternative splicing. In yeast there is a single light chain whose sequence is only distantly related to that of higher eukaryotes. Clathrin light chains have a conserved acidic N-terminal domain, a central coiled-coil domain and a conserved C-terminal domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030130 clathrin coat of trans-Golgi network vesicle, 0030132 clathrin coat of coated pit; PDB: 3LVG_E 3LVH_D.

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.97  E-value=6.1e-31  Score=238.78  Aligned_cols=115  Identities=24%  Similarity=0.518  Sum_probs=102.0

Q ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhhhhhcccccCCCh
Q 046052           67 PEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYMANKEKFHKEVDKHY  146 (318)
Q Consensus        67 ~EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~NRe~Ee~FLa~rE~f~~~a~gt~  146 (318)
                      .+|||.||+||++|+.||+|||..+++++++++++|.+.||+||.+|++++++++.+||.+++.|+..-+.|   ..||.
T Consensus       102 ~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~nk~eee~~~~e~~~~---~~gTe  178 (216)
T KOG4031|consen  102 RDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANNKAEEEALVKENEEF---SPGTE  178 (216)
T ss_pred             ccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHhhccc---CCCch
Confidence            489999999999999999999999999999999999999999999999999999999988777777655553   46799


Q ss_pred             HHHHHhhchhhhhhhhhhccCCCCCCCCcceeecCCCCCCCchhHHHHHHHHHhhCCCCCC
Q 046052          147 WKAIAELIPREVANIEKKKGRKDHDKKPSIVVIQGPKPGKPTDLSRMRQMYMKLKNNPPSH  207 (318)
Q Consensus       147 WERVaeLID~elp~sekK~~kkD~Dkkp~~tv~qGpKpGk~kDlSRMRqILLkLK~~Pp~h  207 (318)
                      ||||++|||                +++++.     |.|  +|+||||+|||+|||.|.+|
T Consensus       179 WErv~kL~D----------------~n~k~s-----k~g--kD~SRlrslL~~LK~aP~a~  216 (216)
T KOG4031|consen  179 WERVAKLCD----------------FNPKSS-----KQG--KDVSRLRSLLISLKQAPGAA  216 (216)
T ss_pred             HHHHHHHHc----------------CCccch-----hcc--ccHHHHHHHHHHhhhCcCCC
Confidence            999999997                445444     457  99999999999999988764

>KOG4031 consensus Vesicle coat protein clathrin, light chain [Intracellular trafficking, secretion, and vesicular transport]

Probab=93.59  E-value=2.3  Score=40.16  Aligned_cols=64  Identities=20%  Similarity=0.214  Sum_probs=54.3

Q ss_pred             CCCCCchhhHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhH
Q 046052           62 PSEMMPEEGFAFREWRRQNAVHLEEKE-KREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNR  125 (318)
Q Consensus        62 P~em~~EEpEaIREWREeqa~rLeEKD-k~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~NR  125 (318)
                      ..+.++|--..-|+=++++-.++-+.+ +..+|++++.|+++++|.++|-+++...+..+++.-.
T Consensus       100 ~~~~epE~IRkWkeeQ~~rl~ekD~~sek~k~ElrekAkKelddwy~~~~ek~~k~~~~nk~eee  164 (216)
T KOG4031|consen  100 RLRDEPEKIRKWKEEQMKRLQEKDEASEKLKEELREKAKKELDDWYDQQNEKLEKTKANNKAEEE  164 (216)
T ss_pred             CcccChHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHH
Confidence            356677888899999999888887776 5578999999999999999999999999999865443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	318
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	2e-20
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	4e-15
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	5e-05

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} Length = 190

 Score = 86.4 bits (213), Expect = 2e-20
 Identities = 16/73 (21%), Positives = 36/73 (49%)

Query: 64  EMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQ 123
           + + +E  + R+WR +    L+E +   K M  +  ++A++    + +++   VE NK  
Sbjct: 78  DRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKIN 137

Query: 124 NREREKLYMANKE 136
           NR  +K +    +
Sbjct: 138 NRIADKAFYQQPD 150

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus} Length = 205

 Score = 71.9 bits (175), Expect = 4e-15
 Identities = 21/131 (16%), Positives = 47/131 (35%), Gaps = 7/131 (5%)

Query: 6   PSPQTYDSPFPSSPPPPLSSDFASPFDPDVDNGVNDSYNDAGHDNIFVSNDPILPPPSEM 65
                          P  +S  +      V+  V    N         ++       ++ 
Sbjct: 42  EGFGAPAGSQGGLAQPGPASGASEDMGATVNGDVFQEANGP-------ADGYAAIAQADR 94

Query: 66  MPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNR 125
           + +E  + R+WR +    L+E +   K M  +  ++A++    + +++   VE NK  NR
Sbjct: 95  LTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKNKINNR 154

Query: 126 EREKLYMANKE 136
             +K +    +
Sbjct: 155 IADKAFYQQPD 165

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J Length = 70

 Score = 40.1 bits (93), Expect = 5e-05
 Identities = 12/68 (17%), Positives = 32/68 (47%)

Query: 64  EMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQ 123
           + +  E  + R+WR +    LE  +   ++   +  ++A +    +Y ++   ++  KA 
Sbjct: 2   DRLQSEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKAN 61

Query: 124 NREREKLY 131
           NR  ++ +
Sbjct: 62  NRVADEAF 69

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	318
1xi4_J	70	LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-p	99.81
3lvg_D	190	LCB, clathrin light chain B; SELF assembly, coated	99.8
3lvh_D	205	LCB, clathrin light chain B; SELF assembly, coated	99.75
4efa_E	233	V-type proton ATPase subunit E; heterotrimer, peri	82.36

>1xi4_J LCA, clathrin light chain A; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 3iyv_J

Probab=99.81  E-value=6.3e-20  Score=141.60  Aligned_cols=65  Identities=18%  Similarity=0.381  Sum_probs=63.6

Q ss_pred             hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Q 046052           68 EEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQNREREKLYM  132 (318)
Q Consensus        68 EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEknka~NRe~Ee~FL  132 (318)
                      +||++||+||++|+++|++||+.+++++++++++|+++||+||.+||.++++++++||..++.||
T Consensus         6 ~EpE~Ir~WRE~~~~~i~erd~~~~~~k~e~~~~A~k~iddfY~~yn~k~ek~~~~nR~~~e~Fl   70 (70)
T 1xi4_J            6 SEPESIRKWREEQTERLEALDANSRKQEAEWKEKAIKELDEWYARQDEQLQKTKANNRVADEAFY   70 (70)
T ss_pred             cCcHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhC
Confidence            68999999999999999999999999999999999999999999999999999999999999997

>3lvg_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus}

Probab=99.80  E-value=2.6e-21  Score=171.38  Aligned_cols=105  Identities=15%  Similarity=0.249  Sum_probs=89.3

Q ss_pred             CCCCCCCC-CCCC----CCCCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052           46 AGHDNIFV-SNDP----ILPPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVETN  120 (318)
Q Consensus        46 ~~~dd~f~-s~gp----ilp~P~em~~EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEkn  120 (318)
                      ++++++|. ++||    +...+..+..+|||+||+|||+|+++|++||+.+++++++++++|++.||+||++|+++++++
T Consensus        55 ~~~Gd~~qEsNGpsD~yaAIaqad~LeEEPEsIRKWREEQkkRLEeRDA~SekkKeEwrEKAKKELDDWYenYNEQ~EKn  134 (190)
T 3lvg_D           55 XXXXXXXXXXXXXXXXXXXIAQADRLTQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEKN  134 (190)
T ss_dssp             HHCCCCCCCHHHHHHHHHHHCCCSTTTTSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             ccccccccccccccccccccCcccccccCchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46677775 4443    233334455699999999999999999999999999999999999999999999999999999


Q ss_pred             HHHhHHHHHHHHhhhhhcccccCCChHHHHHhh
Q 046052          121 KAQNREREKLYMANKEKFHKEVDKHYWKAIAEL  153 (318)
Q Consensus       121 ka~NRe~Ee~FLa~rE~f~~~a~gt~WERVaeL  153 (318)
                      |.+||+.|++||++|+.   ...|.+|+--...
T Consensus       135 Ka~NR~aEEeFLaqRdd---ttiGyV~~~~~~~  164 (190)
T 3lvg_D          135 KINNRIADKAFYQQPDA---DIIXXXXXXXXXX  164 (190)
T ss_dssp             HHTTCSSTTTSSHHHHH---HHCCTTTHHHHHH
T ss_pred             HHHhHHHHHHHHhCCcc---chhhhhccccccc
Confidence            99999999999999998   5679999854433

>3lvh_D LCB, clathrin light chain B; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 9.00A {Bos taurus}

Probab=99.75  E-value=2.2e-19  Score=161.59  Aligned_cols=92  Identities=21%  Similarity=0.361  Sum_probs=71.8

Q ss_pred             CCCCCCCC-CCCCCC-----CCCCCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052           46 AGHDNIFV-SNDPIL-----PPPSEMMPEEGFAFREWRRQNAVHLEEKEKREKEMRNQIIDEAEEYKRAFYEKRKLNVET  119 (318)
Q Consensus        46 ~~~dd~f~-s~gpil-----p~P~em~~EEpEaIREWREeqa~rLeEKDk~EkEkKeeiikEAee~iD~FYe~rn~kkEk  119 (318)
                      ..+.++|. ++||.-     ...... .+|||+||+|||+|++||++||+.+++++++++++|++.|++||++|+.++++
T Consensus        70 ~~ngd~~qesngp~d~yaai~qad~l-eeEPEsIRkWREEq~kRLeekDa~sekkk~E~rekAkKeLddwY~~yneqlEK  148 (205)
T 3lvh_D           70 TVNGDVFQEANGPADGYAAIAQADRL-TQEPESIRKWREEQRKRLQELDAASKVMEQEWREKAKKDLEEWNQRQSEQVEK  148 (205)
T ss_dssp             ---------------------CCSTT-TBSTTHHHHHHHHHTTTSTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhhhhcCCCccchhhhcccccc-ccCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666774 555532     223333 48999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHhHHHHHHHHhhhhhc
Q 046052          120 NKAQNREREKLYMANKEKF  138 (318)
Q Consensus       120 nka~NRe~Ee~FLa~rE~f  138 (318)
                      +|.+||..+++||++|+..
T Consensus       149 ~ka~NR~aeeeFlaqrd~~  167 (205)
T 3lvh_D          149 NKINNRIADKAFYQQPDAD  167 (205)
T ss_dssp             HHHTTCSSTTTSSHHHHHH
T ss_pred             HHHHhHHHHHHHHhCccch
Confidence            9999999999999999874

>4efa_E V-type proton ATPase subunit E; heterotrimer, peripheral stalk, vacuolar ATPase, hydrolase; 2.82A {Saccharomyces cerevisiae} PDB: 4dl0_J 2kz9_A

Probab=82.36  E-value=14  Score=32.41  Aligned_cols=51  Identities=10%  Similarity=0.145  Sum_probs=35.5

Q ss_pred             HHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046052           73 FREWRRQNAVHLEEKEKRE-KEMRNQIIDEAEEYKRAFYEKRKLNVETNKAQ  123 (318)
Q Consensus        73 IREWREeqa~rLeEKDk~E-kEkKeeiikEAee~iD~FYe~rn~kkEknka~  123 (318)
                      |++=-++.+.+|..+-+++ ...+.+++++++.-|+..|++...+.+..+..
T Consensus        24 I~qEA~eKA~EI~~kAeeE~~~ek~~~v~~~~~~i~~~~ek~~kq~e~~~~i   75 (233)
T 4efa_E           24 IRKEAEEKAKEIQLKADQEYEIEKTNIVRNETNNIDGNFKSKLKKAMLSQQI   75 (233)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4444555666666555443 34677889999999999999888777766544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00