Citrus Sinensis ID: 046085

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230
Protein Sequence
MCLELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWELESSDAESTS
Secondary Structure (PSIPRED)
ccHHHHHHHHHHHHHHHHHHHHHccccccccEEEcccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHcEEEEEcccccHHHHHHHHHHHHHHHHcccccEEEEEEccccHHHHHHHHHHccccEEEEEcccccHHHHHHHHccccccHHHHHHHHHccccccHHccccccccEEEEcccccccc
Secondary Structure Prediction (SSPRO)
ccccHHHHHHHHHHHHHHHHHHcccccccccEEccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHccccccccHHHHHHHcccEEEEcccccHHHHHHHHHHHHHHHHHccccEEEEEEcccHHHHHHHHHHHccccEEEEEccccccHHHHHcHHHHccHHHHHcccccccccHHHHcHcccccHHEEccccccccc
Coil and Loop (DISEMBL)
MCLELQESKEKKIKELFNQLEikgvirpaepYVLVIVEGDlrlynndkLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASkatltpkvGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDmmdkrrfgclvfvsddSDFVEVLQEATLRCLKTGvagymndgTLKRIADRLKWAYNSEVEKKRLIGMIdadciqkedKDAWWElessdaests
Flexible Loop (DISEMBL)
mclelqesKEKKIKELFNQleikgvirpaepYVLVIVEGDLRLYNNDKLVNHFKQihkreqkkrlnqiesakgkmrehlvGNYSMRMETYKMASKatltpkvgySLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLktgvagymndgtlKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWElessdaests
Low Complexity Region (SEG)
MCLELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLvfvsddsdfvEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWELESSDAESTS
Disordered region (IsUnstruct)
*************KELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH*********************LVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWE**********
Disordered Region (DISOPRED)
*C*ELQ*SKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR*************************MRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSD*******LLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLI*MIDA*CIQKEDKDAWWE**********
Disordered Region (DISEMBL)
MCLELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWE**********
Disordered Region (DISPRO)
MCLELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWELES*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MCLELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIADRLKWAYNSEVEKKRLIGMIDADCIQKEDKDAWWELESSDAESTS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
255537067	375	nucleic acid binding protein, putative [	0.926	0.568	0.485	2e-61
224074705	300	predicted protein [Populus trichocarpa]	0.952	0.73	0.471	6e-60
255537065	294	nucleic acid binding protein, putative [	0.817	0.639	0.495	2e-54
449494370	368	PREDICTED: uncharacterized LOC101211196	0.943	0.589	0.468	2e-53
357462889	411	hypothetical protein MTR_3g084750 [Medic	0.926	0.518	0.480	3e-52
356538069	393	PREDICTED: uncharacterized protein LOC10	0.926	0.541	0.444	1e-51
449460491	367	PREDICTED: uncharacterized protein LOC10	0.939	0.588	0.464	2e-51
356569166	356	PREDICTED: uncharacterized protein LOC10	0.756	0.488	0.568	2e-49
297809527	365	zinc finger family protein [Arabidopsis	0.791	0.498	0.521	6e-48
15234485	364	C2H2 type zinc finger protein [Arabidops	0.791	0.5	0.510	2e-46

>gi|255537067|ref|XP_002509600.1| nucleic acid binding protein, putative [Ricinus communis] gi|223549499|gb|EEF50987.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  241 bits (615), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 130/268 (48%), Positives = 165/268 (61%), Gaps = 55/268 (20%)

Query: 9   KEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQI 68
           +++K ++L N LE KGVI+P EPY+  +     R YNN+KL+NHFKQIH+REQ+KRLNQI
Sbjct: 104 EQRKERKLLNHLEKKGVIKPVEPYLCRVC--GRRFYNNEKLINHFKQIHEREQQKRLNQI 161

Query: 69  ESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAAD 128
           ESA+GK R +LV  Y+M+M+ YK A++  LTPKVGY L  +LKR  FWV T+SDK QAAD
Sbjct: 162 ESARGKRRVNLVAKYAMKMQKYKNAARDVLTPKVGYGLADELKRAGFWVTTVSDKPQAAD 221

Query: 129 VLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD-- 186
           V LR ++VDMMDKRR  CLV VSDDSDFV VL+EA LRC+KT V G +NDG LKR+AD  
Sbjct: 222 VALREHIVDMMDKRRAECLVLVSDDSDFVGVLKEAKLRCVKTVVVGDINDGALKRVADAE 281

Query: 187 -----------------------------RLKWAYNSEVEKKRLIGMID----------- 206
                                        +L+W YN E +KK ++   +           
Sbjct: 282 FSWQEILMGKAKKEAVSVVGKWKDRDILKKLEWTYNPEEQKKFVVNAFNDYNGDTDEIDN 341

Query: 207 -----------ADCIQKEDKDAWWELES 223
                      A+C+QKE   AWWEL S
Sbjct: 342 GDFDGFSDENGANCMQKEAVGAWWELNS 369

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224074705|ref|XP_002304433.1| predicted protein [Populus trichocarpa] gi|222841865|gb|EEE79412.1| predicted protein [Populus trichocarpa]

 Score =  236 bits (601), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 133/282 (47%), Positives = 167/282 (59%), Gaps = 63/282 (22%)

Query: 9   KEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQI 68
           +E+K ++  NQLE KGVI+P E Y+  +   +   YNN+K +NHFKQIH+REQ+KRLNQI
Sbjct: 19  EERKQRKSLNQLENKGVIKPVESYLCRVCGRNF--YNNEKFINHFKQIHEREQQKRLNQI 76

Query: 69  ESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAAD 128
           ESA+GK R  LVG Y+M+M+ YK A++  LTPKVGY L  +LKR  FWVRT+ DK QAAD
Sbjct: 77  ESARGKRRVMLVGKYAMKMQKYKNAARDILTPKVGYGLADELKRAGFWVRTVLDKPQAAD 136

Query: 129 VLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD-- 186
           V L+++MVDMMDKRR  C V VSDDSDFV VL+EA  RCLKT V G +NDG LKR+AD  
Sbjct: 137 VALKDHMVDMMDKRRAECFVLVSDDSDFVHVLKEAKSRCLKTVVVGDVNDGALKRVADAG 196

Query: 187 -----------------------------RLKWAYNSEVEKKRLIGMI------------ 205
                                        RL+W Y+ EVEK  L GM+            
Sbjct: 197 FSWQEILMGKAKKDAETVVGRWKDRDVLKRLEWTYDPEVEKN-LHGMVYEFDNHESKDEC 255

Query: 206 -----------------DADCIQKEDKDAWWELESSDAESTS 230
                            D  C+QKED   WWEL+S+   ++S
Sbjct: 256 DGNDSEDGDIDNILDGDDVGCLQKEDARGWWELDSNPEVTSS 297

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255537065|ref|XP_002509599.1| nucleic acid binding protein, putative [Ricinus communis] gi|223549498|gb|EEF50986.1| nucleic acid binding protein, putative [Ricinus communis]

 Score =  218 bits (555), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/242 (49%), Positives = 148/242 (61%), Gaps = 54/242 (22%)

Query: 42  RLYNNDKLVNHFKQIHKREQKKRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPK 101
           R YNN+KL+NHFKQIH+REQ+KRLNQIESA+GK R +LV  Y+M+M+ YK A++  LTPK
Sbjct: 54  RFYNNEKLINHFKQIHEREQQKRLNQIESARGKRRVNLVAKYAMKMQKYKNAARDVLTPK 113

Query: 102 VGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQ 161
           VGY L  +LKR  FWV T+SDK QAADV LR ++VDMMDKRR  CLV VSDDSDFV VL+
Sbjct: 114 VGYGLADELKRAGFWVTTVSDKPQAADVALREHIVDMMDKRRAECLVLVSDDSDFVGVLK 173

Query: 162 EATLRCLKTGVAGYMNDGTLKRIAD-------------------------------RLKW 190
           EA LRC+KT V G +NDG LKR+AD                               +L+W
Sbjct: 174 EAKLRCVKTVVVGDINDGALKRVADAEFSWQEILMGKAKKEAVSVVGKWKDRDILKKLEW 233

Query: 191 AYNSEVEKKRLIGMID----------------------ADCIQKEDKDAWWELESSDAES 228
            YN E +KK ++   +                      A+C+QKE   AWWEL +SD E 
Sbjct: 234 TYNPEEQKKFVVNAFNDYNSDNDEIENGDFDGFSDENGANCMQKEAVGAWWEL-NSDTEP 292

Query: 229 TS 230
            S
Sbjct: 293 IS 294

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449494370|ref|XP_004159528.1| PREDICTED: uncharacterized LOC101211196 [Cucumis sativus]

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 125/267 (46%), Positives = 162/267 (60%), Gaps = 50/267 (18%)

Query: 11  KKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIES 70
           K+ +++ NQLE KGVI+  EPY+  +   +   Y N+KLVNHFKQIH+ E KKRLNQIES
Sbjct: 98  KRERKMLNQLERKGVIKSIEPYLCRVCGRNF--YTNEKLVNHFKQIHESEHKKRLNQIES 155

Query: 71  AKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVL 130
           AKG  R  LV  YSM+++ YK A++  LTP+VGY L  +LKR  F+V+T+SDK +AADV 
Sbjct: 156 AKGSRRVKLVAKYSMKIQKYKNAARDVLTPEVGYGLADELKRAGFFVKTVSDKPEAADVE 215

Query: 131 LRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD---- 186
           LRN MV++MD+R+  CLV VSDDSDFV VL+EA LRCL+T V G +NDG LKR AD    
Sbjct: 216 LRNDMVEIMDRRKAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFS 275

Query: 187 ---------------------------RLKWAYNSEVEKKRL-------------IGMID 206
                                      RL+W YN  +EKK                G +D
Sbjct: 276 WQEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPPLEKKVSGLDDDIGEDDDVEGGSVD 335

Query: 207 A---DCIQKEDKDAWWELESSDAESTS 230
               + +Q  D+ AWW+L SSDAE+ +
Sbjct: 336 GGLCENMQNNDRGAWWDL-SSDAETDT 361

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357462889|ref|XP_003601726.1| hypothetical protein MTR_3g084750 [Medicago truncatula] gi|355490774|gb|AES71977.1| hypothetical protein MTR_3g084750 [Medicago truncatula]

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 123/256 (48%), Positives = 158/256 (61%), Gaps = 43/256 (16%)

Query: 11  KKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIES 70
           +K +EL  +LE KGVI+  EP+V  +     + Y N+KLVNHFKQ+H+RE  KRLN+IES
Sbjct: 152 RKERELLYRLEDKGVIKRNEPHVCRVC--GRKFYTNEKLVNHFKQLHEREHAKRLNRIES 209

Query: 71  AKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVL 130
           A+G  +  LVG Y+M+ME YK A+ A LTPKVGY L  +LKR  FWV+T+ D+ QAAD+ 
Sbjct: 210 ARGSRKVKLVGQYAMKMEKYKKAASAVLTPKVGYGLADELKRAGFWVQTVLDRPQAADIA 269

Query: 131 LRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAG-YMNDGTLKRIAD--- 186
           L+ +MVDMMD RR  CLV VSDDSDFV+V++EA LRCLKT V G + +DG LKR AD   
Sbjct: 270 LQKHMVDMMDHRRVECLVLVSDDSDFVDVIKEAKLRCLKTVVIGDFSSDGVLKRTADTAF 329

Query: 187 ----------------------------RLKWAYNSEVEKKRL---------IGMIDADC 209
                                       RL+W YN EV+KK+L          G  D D 
Sbjct: 330 SWEEILMGKAKKEAVSVVENWKDRDILKRLEWTYNPEVDKKKLNLDDVVPETSGDDDIDD 389

Query: 210 IQKEDKDAWWELESSD 225
             K+D+  WW+L+S D
Sbjct: 390 DYKDDRGPWWKLDSDD 405

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356538069|ref|XP_003537527.1| PREDICTED: uncharacterized protein LOC100785257 [Glycine max]

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 117/263 (44%), Positives = 153/263 (58%), Gaps = 50/263 (19%)

Query: 11  KKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIES 70
           +K KEL  +LE KGVI+P +PY   +     + Y NDKLVNHFKQ+H+ E  KR+NQIES
Sbjct: 116 RKEKELLYRLENKGVIKPNQPYRCKVC--GRKFYTNDKLVNHFKQLHESEHTKRMNQIES 173

Query: 71  AKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVL 130
           A+G  R  LV  YSM+ME YK A+   LTPKVGY L  +LKR  FWVRT+SDK QAAD  
Sbjct: 174 ARGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELKRAGFWVRTVSDKPQAADQA 233

Query: 131 LRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD---- 186
           L++++VD+MD RR  C+V VSDDSDFV+V+ EA +RCLKT V G +++G LKR AD    
Sbjct: 234 LQSHIVDIMDHRRVECVVLVSDDSDFVDVINEAKMRCLKTVVIGDIDEGFLKRTADTAFS 293

Query: 187 ---------------------------RLKWAYNSEVEKKRLI------------GMIDA 207
                                      +L+W YN + +K                 + D 
Sbjct: 294 WEEILMGKAKKQAVSVVKNWKDRDILKKLEWTYNPDEDKSNFNLDDTVTEASEDDNIEDT 353

Query: 208 DCIQ-----KEDKDAWWELESSD 225
            C +     K+D+ +WWEL+S D
Sbjct: 354 TCDEVDDAYKDDRGSWWELDSDD 376

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449460491|ref|XP_004147979.1| PREDICTED: uncharacterized protein LOC101211196 [Cucumis sativus]

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 124/267 (46%), Positives = 161/267 (60%), Gaps = 51/267 (19%)

Query: 11  KKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIES 70
           K+ +++ NQLE KGVI+  EPY+  +   +   Y N+KLVNHFKQIH+ E KKRLNQIES
Sbjct: 98  KRERKMLNQLERKGVIKSIEPYLCRVCGRNF--YTNEKLVNHFKQIHESEHKKRLNQIES 155

Query: 71  AKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVL 130
           AKG  R  LV  YSM+++ YK A++  L P+VGY L  +LKR  F+V+T+SDK +AADV 
Sbjct: 156 AKGSRRVKLVAKYSMKIQKYKNAARDVL-PEVGYGLADELKRAGFFVKTVSDKPEAADVE 214

Query: 131 LRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD---- 186
           LRN MV++MD+R+  CLV VSDDSDFV VL+EA LRCL+T V G +NDG LKR AD    
Sbjct: 215 LRNDMVEIMDRRKAECLVLVSDDSDFVNVLKEAKLRCLRTVVVGDLNDGPLKRNADTGFS 274

Query: 187 ---------------------------RLKWAYNSEVEKKRL-------------IGMID 206
                                      RL+W YN  +EKK                G +D
Sbjct: 275 WQEILMGKAKKEAVSVVGKWKDRDVLKRLEWTYNPPLEKKVSGLDDDIGEDDDVEGGSVD 334

Query: 207 A---DCIQKEDKDAWWELESSDAESTS 230
               + +Q  D+ AWW+L SSDAE+ +
Sbjct: 335 GGLCENMQNNDRGAWWDL-SSDAETDT 360

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356569166|ref|XP_003552776.1| PREDICTED: uncharacterized protein LOC100789840 [Glycine max]

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 100/176 (56%), Positives = 129/176 (73%), Gaps = 2/176 (1%)

Query: 11  KKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQIES 70
           +K KEL  +LE KGVI+P +PY   +     + + NDKLVNHFKQ+H+RE  KR+NQIES
Sbjct: 121 RKEKELLYRLENKGVIKPNQPYRCKVC--GRKFHTNDKLVNHFKQLHEREHAKRMNQIES 178

Query: 71  AKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAADVL 130
           ++G  R  LV  YSM+ME YK A+   LTPKVGY L  +L+R  FWV+T+SDK QAAD  
Sbjct: 179 SRGSRRVKLVAKYSMKMEKYKKAASDILTPKVGYGLADELRRAGFWVQTVSDKPQAADQA 238

Query: 131 LRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD 186
           L++++VD+MD RR  C+V VSDDSDFV+V+ EA +RCLKT V G ++DG LKR AD
Sbjct: 239 LQSHIVDIMDHRRVECVVLVSDDSDFVDVINEAKMRCLKTVVIGDIDDGFLKRTAD 294

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297809527|ref|XP_002872647.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata] gi|297318484|gb|EFH48906.1| zinc finger family protein [Arabidopsis lyrata subsp. lyrata]

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 96/184 (52%), Positives = 130/184 (70%), Gaps = 2/184 (1%)

Query: 3   LELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQK 62
           + L+  +++K ++L NQLE KG+++P EPY   +   D R Y N+KL+NHFKQIH+ E +
Sbjct: 86  VPLEVREQRKDRKLLNQLENKGLVKPPEPYFCGVC--DRRFYTNEKLINHFKQIHETENQ 143

Query: 63  KRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSD 122
           KR+ QIES+KG  R  LV  YSM++E YK A++  LTPK GY L  +LKR  FWV+ +SD
Sbjct: 144 KRMRQIESSKGHQRVRLVAKYSMKIEKYKRAARNILTPKEGYGLADELKRAGFWVKMVSD 203

Query: 123 KLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLK 182
           K +AAD  L+ ++VDMMDKR   C+V VSDDSD+  +L EA  RCL+T V G  N+G LK
Sbjct: 204 KPEAADKALKEHLVDMMDKREVECVVLVSDDSDYAGILWEAKERCLRTVVIGDSNEGALK 263

Query: 183 RIAD 186
           R+AD
Sbjct: 264 RVAD 267

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15234485|ref|NP_192961.1| C2H2 type zinc finger protein [Arabidopsis thaliana] gi|5281035|emb|CAB45971.1| hypothetical proteins [Arabidopsis thaliana] gi|7267925|emb|CAB78267.1| hypothetical proteins [Arabidopsis thaliana] gi|26452877|dbj|BAC43517.1| unknown protein [Arabidopsis thaliana] gi|28973009|gb|AAO63829.1| unknown protein [Arabidopsis thaliana] gi|332657707|gb|AEE83107.1| C2H2 type zinc finger protein [Arabidopsis thaliana]

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 94/184 (51%), Positives = 129/184 (70%), Gaps = 2/184 (1%)

Query: 3   LELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQK 62
           + L+  +++K ++L N+LE KG+++P EPY   +   D R Y N+KL+NHFKQIH+ E +
Sbjct: 88  VPLEVREQRKDRKLLNKLENKGLVKPPEPYFCGVC--DRRFYTNEKLINHFKQIHETENQ 145

Query: 63  KRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSD 122
           KR+ QIES+KG  R  LV  YSM++E YK A++  LTPK GY L  +LKR  FWV+ +SD
Sbjct: 146 KRMRQIESSKGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSD 205

Query: 123 KLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMNDGTLK 182
           K  AAD  L+ ++V++MDKR   C+V VSDDSDF  +L EA  RCL+T V G  N+G LK
Sbjct: 206 KPDAADKALKEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALK 265

Query: 183 RIAD 186
           R+AD
Sbjct: 266 RVAD 269

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	230
TAIR|locus:2139119	364	AT4G12240 "AT4G12240" [Arabido	0.895	0.565	0.435	2.9e-44
TAIR|locus:2173038	396	AT5G52010 "AT5G52010" [Arabido	0.8	0.464	0.342	2.1e-19

TAIR|locus:2139119 AT4G12240 "AT4G12240" [Arabidopsis thaliana (taxid:3702)]

 Score = 442 (160.7 bits), Expect = 2.9e-44, Sum P(2) = 2.9e-44
 Identities = 94/216 (43%), Positives = 136/216 (62%)

Query:     3 LELQESKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQK 62
             LE++E  ++K ++L N+LE KG+++P EPY   +   D R Y N+KL+NHFKQIH+ E +
Sbjct:    90 LEVRE--QRKDRKLLNKLENKGLVKPPEPYFCGVC--DRRFYTNEKLINHFKQIHETENQ 145

Query:    63 KRLNQIESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSD 122
             KR+ QIES+KG  R  LV  YSM++E YK A++  LTPK GY L  +LKR  FWV+ +SD
Sbjct:   146 KRMRQIESSKGHRRVRLVAKYSMKIEKYKRAARNVLTPKEGYGLADELKRAGFWVKMVSD 205

Query:   123 KLQAADVLLRNYMVDMMDKRRFGCLXXXXXXXXXXEVLQEATLRCLKTGVAGYMNDGTLK 182
             K  AAD  L+ ++V++MDKR   C+           +L EA  RCL+T V G  N+G LK
Sbjct:   206 KPDAADKALKEHLVEVMDKREVECVVLVSDDSDFAGILWEAKERCLRTVVIGDSNEGALK 265

Query:   183 RIAD-RLKWAY----NSEVEKKRLIGMI-DADCIQK 212
             R+AD    W       ++ E ++++G   D D ++K
Sbjct:   266 RVADVAYSWKEVTMGKAKKEVEKVVGKWKDRDVLKK 301

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

GO:0005739 "mitochondrion" evidence=IDA

TAIR|locus:2173038 AT5G52010 "AT5G52010" [Arabidopsis thaliana (taxid:3702)]

 Score = 235 (87.8 bits), Expect = 2.1e-19, P = 2.1e-19
 Identities = 65/190 (34%), Positives = 100/190 (52%)

Query:     9 KEKKIKELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKRLNQI 68
             +E++ +   + +E KG + P +PY+  +     +  N D L  HFKQ+H+RE++K++N++
Sbjct:   129 EERRERRNLDFMERKGEVTPIDPYICGVCGRKCKT-NLD-LKKHFKQLHERERQKKVNRM 186

Query:    69 ESAKGKMREHLVGNYSMRMETYKMASKATLTPKVGYSLVVKLKRVWFWVRTMSDKLQAAD 128
              S KGK R+     Y    E Y  A+++ LTPKVGY L  +L+R   +V+T+ DK QAAD
Sbjct:   187 RSLKGKKRQKFKERYVSGNEKYNEAARSLLTPKVGYGLEAELRRAGVYVKTVEDKPQAAD 246

Query:   129 VLLRNYMVDMMDKRRFGCLXXXXXXXXXXEVLQEATLRCLKTGVAGYMNDGTLKRIADRL 188
               ++  +   M  R    L          ++L++A    L T V   M D  L R AD  
Sbjct:   247 WAVKRQIQHSMT-RGIDWLVLVSDDKDFSDMLRKAREADLGTLVVSDM-DRALGRHADL- 303

Query:   189 KWAYNSEVEK 198
              W   S VEK
Sbjct:   304 -WVPWSGVEK 312


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.133   0.388    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      230       220   0.00094  112 3  11 22  0.38    33
                                                     32  0.40    36


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  610 (65 KB)
  Total size of DFA:  179 KB (2103 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  19.57u 0.09s 19.66t   Elapsed:  00:00:01
  Total cpu time:  19.57u 0.09s 19.66t   Elapsed:  00:00:01
  Start:  Mon May 20 15:33:14 2013   End:  Mon May 20 15:33:15 2013

GO:0003676 "nucleic acid binding" evidence=ISS

GO:0005622 "intracellular" evidence=IEA

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS

GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: fgenesh4_pg.C_LG_III000923 hypothetical protein (300 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	230
cd06167	151	cd06167, LabA_like, LabA_like proteins	1e-07

>gnl|CDD|199895 cd06167, LabA_like, LabA_like proteins

 Score = 49.4 bits (118), Expect = 1e-07
 Identities = 27/102 (26%), Positives = 40/102 (39%), Gaps = 7/102 (6%)

Query: 96  ATLTPKVGYSLVVKLKRVWFWVRTMSDKL-----QAADVLLRNYMVDMMDKRRFGCLVFV 150
           A   P         L+R+ F V  +         +  DV L    +++  +RR   +V V
Sbjct: 50  ARPDPSSPDRFQEALRRLGFEVIRVPRLRGKGEEKGVDVALALDALELAYERRIDTIVLV 109

Query: 151 SDDSDFVEVLQEATLRCLKTGVAGYMN--DGTLKRIADRLKW 190
           S DSDFV +L+    R  +  V G+       LK  AD    
Sbjct: 110 SGDSDFVPLLERLRERGKRVIVVGFRRSASSALKNAADEFID 151

A well conserved group of domains found in all three kingdoms of life, with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression. Another member is the N-terminal domain of limkain b1, a human autoantigen associated with cytoplasmic vesicles. Curiously, a gene labeled NicB from Pseudomonas putida S16, which is described as a putative NADH-dependent hydroxylase involved in the microbial degradation of nicotine also falls in the LabA_like family. LabA_like domains exhibit some similarity to the NYN domain, a distant relative of the PIN-domain nucleases. Length = 151

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	230
cd06167	149	LabA_like LabA_like proteins. A well conserved gro	99.38
TIGR00288	160	conserved hypothetical protein TIGR00288. This fam	99.36
PF01936	146	NYN: NYN domain; InterPro: IPR021139 This highly c	99.3
COG1432	181	Uncharacterized conserved protein [Function unknow	98.36
PF00096	23	zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR0070	96.25
PF13894	24	zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP	96.21
cd01545	270	PBP1_SalR Ligand-binding domain of DNA transcripti	95.37
cd06305	273	PBP1_methylthioribose_binding_like Methylthioribos	95.22
PF13913	25	zf-C2HC_2: zinc-finger of a C2HC-type	95.15
cd05013	139	SIS_RpiR RpiR-like protein. RpiR contains a SIS (S	94.54
cd06295	275	PBP1_CelR Ligand binding domain of a transcription	94.46
TIGR02634	302	xylF D-xylose ABC transporter, substrate-binding p	94.44
cd01542	259	PBP1_TreR_like Ligand-binding domain of DNA transc	94.4
cd06312	271	PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-bi	94.29
cd06318	282	PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-bi	94.14
cd06324	305	PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-b	93.98
cd06281	269	PBP1_LacI_like_5 Ligand-binding domain of uncharac	93.88
cd06282	266	PBP1_GntR_like_2 Ligand-binding domain of putative	93.87
PF13407	257	Peripla_BP_4: Periplasmic binding protein domain;	93.86
cd06270	268	PBP1_GalS_like Ligand binding domain of DNA transc	93.79
PF13912	27	zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9	93.77
cd05014	128	SIS_Kpsf KpsF-like protein. KpsF is an arabinose-5	93.49
cd01539	303	PBP1_GGBP Periplasmic glucose/galactose-binding pr	93.42
cd01541	273	PBP1_AraR Ligand-binding domain of DNA transcripti	93.38
cd06306	268	PBP1_TorT-like TorT-like proteins, a periplasmic b	93.38
cd06294	270	PBP1_ycjW_transcription_regulator_like Ligand-bind	93.34
cd06302	298	PBP1_LsrB_Quorum_Sensing Periplasmic binding domai	93.21
cd06313	272	PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-bi	93.21
smart00355	26	ZnF_C2H2 zinc finger.	93.19
cd01540	289	PBP1_arabinose_binding Periplasmic L-arabinose-bin	93.18
cd01538	288	PBP1_ABC_xylose_binding Periplasmic xylose-binding	93.08
cd06299	265	PBP1_LacI_like_13 Ligand-binding domain of DNA-bin	93.02
cd06316	294	PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-bi	92.93
cd06320	275	PBP1_allose_binding Periplasmic allose-binding dom	92.92
PF00532	279	Peripla_BP_1: Periplasmic binding proteins and sug	92.92
PRK10653	295	D-ribose transporter subunit RbsB; Provisional	92.87
cd06303	280	PBP1_LuxPQ_Quorum_Sensing Periplasmic binding prot	92.87
PRK15408	336	autoinducer 2-binding protein lsrB; Provisional	92.82
cd06323	268	PBP1_ribose_binding Periplasmic sugar-binding doma	92.81
cd06289	268	PBP1_MalI_like Ligand-binding domain of MalI, a tr	92.69
PHA00616	44	hypothetical protein	92.67
cd06314	271	PBP1_tmGBP Periplasmic sugar-binding domain of The	92.64
cd06322	267	PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-b	92.57
cd06321	271	PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-b	92.5
PRK15482	285	transcriptional regulator MurR; Provisional	92.42
cd06311	274	PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-bi	92.37
cd06317	275	PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-bi	92.37
cd06308	270	PBP1_sensor_kinase_like Periplasmic binding domain	92.31
PRK10014	342	DNA-binding transcriptional repressor MalI; Provis	92.27
cd06310	273	PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-bi	92.2
cd06285	265	PBP1_LacI_like_7 Ligand-binding domain of uncharac	92.13
cd06292	273	PBP1_LacI_like_10 Ligand-binding domain of unchara	92.05
cd06273	268	PBP1_GntR_like_1 This group includes the ligand-bi	92.04
TIGR02637	302	RhaS rhamnose ABC transporter, rhamnose-binding pr	92.02
cd06301	272	PBP1_rhizopine_binding_like Periplasmic binding pr	91.89
cd06315	280	PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-bi	91.86
cd06296	270	PBP1_CatR_like Ligand-binding domain of a LacI-lik	91.83
cd06277	268	PBP1_LacI_like_1 Ligand-binding domain of uncharac	91.77
cd01575	268	PBP1_GntR Ligand-binding domain of DNA transcripti	91.69
cd06309	273	PBP1_YtfQ_like Periplasmic binding domain of ABC-t	91.6
cd06319	277	PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-b	91.4
cd06298	268	PBP1_CcpA_like Ligand-binding domain of the catabo	91.36
TIGR02417	327	fruct_sucro_rep D-fructose-responsive transcriptio	91.22
PF09237	54	GAGA: GAGA factor; InterPro: IPR015318 Zinc finger	91.09
cd06278	266	PBP1_LacI_like_2 Ligand-binding domain of uncharac	91.06
PF01380	131	SIS: SIS domain SIS domain web page.; InterPro: IP	90.94
PRK12342	254	hypothetical protein; Provisional	90.93
PRK10355	330	xylF D-xylose transporter subunit XylF; Provisiona	90.9
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	90.77
cd06297	269	PBP1_LacI_like_12 Ligand-binding domain of unchara	90.59
cd06283	267	PBP1_RegR_EndR_KdgR_like Ligand-binding domain of	90.33
smart00451	35	ZnF_U1 U1-like zinc finger. Family of C2H2-type zi	90.32
cd06271	268	PBP1_AglR_RafR_like Ligand-binding domain of DNA t	90.29
PRK11557	278	putative DNA-binding transcriptional regulator; Pr	90.21
cd06274	264	PBP1_FruR Ligand binding domain of DNA transcripti	89.86
cd05008	126	SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repea	89.79
PRK09701	311	D-allose transporter subunit; Provisional	89.71
PHA00732	79	hypothetical protein	89.56
cd06293	269	PBP1_LacI_like_11 Ligand-binding domain of unchara	89.42
cd01536	267	PBP1_ABC_sugar_binding_like Periplasmic sugar-bind	89.26
PRK10936	343	TMAO reductase system periplasmic protein TorT; Pr	89.25
PRK11303	328	DNA-binding transcriptional regulator FruR; Provis	88.75
cd05005	179	SIS_PHI Hexulose-6-phosphate isomerase (PHI). PHI	88.75
PF05605	54	zf-Di19: Drought induced 19 protein (Di19), zinc-b	88.63
TIGR00147	293	lipid kinase, YegS/Rv2252/BmrU family. The E. coli	88.52
PRK14987	331	gluconate operon transcriptional regulator; Provis	88.45
cd06291	265	PBP1_Qymf_like Ligand binding domain of the lacI-l	88.43
cd06267	264	PBP1_LacI_sugar_binding_like Ligand binding domain	88.42
cd06300	272	PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-bi	88.19
cd06290	265	PBP1_LacI_like_9 Ligand-binding domain of uncharac	87.84
cd01574	264	PBP1_LacI Ligand-binding domain of DNA transcripti	87.42
TIGR00441	154	gmhA phosphoheptose isomerase. Involved in lipopol	87.36
PF12874	25	zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG	87.35
cd06307	275	PBP1_uncharacterized_sugar_binding Periplasmic sug	87.18
cd06284	267	PBP1_LacI_like_6 Ligand-binding domain of an uncha	86.83
cd05710	120	SIS_1 A subgroup of the SIS domain. SIS (Sugar ISo	86.62
PRK15395	330	methyl-galactoside ABC transporter galactose-bindi	86.6
TIGR02955	295	TMAO_TorT TMAO reductase system periplasmic protei	86.3
PRK11337	292	DNA-binding transcriptional repressor RpiR; Provis	86.2
TIGR03127	179	RuMP_HxlB 6-phospho 3-hexuloisomerase. Members of	86.14
cd01537	264	PBP1_Repressors_Sugar_Binding_like Ligand-binding	85.93
PF02310	121	B12-binding: B12 binding domain; InterPro: IPR0061	85.51
cd06361	403	PBP1_GPC6A_like Ligand-binding domain of the promi	85.23
PF13465	26	zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A	85.11
PRK07239	381	bifunctional uroporphyrinogen-III synthetase/respo	85.05
cd06275	269	PBP1_PurR Ligand-binding domain of purine represso	84.95
TIGR01481	329	ccpA catabolite control protein A. Catabolite cont	84.87
cd05006	177	SIS_GmhA Phosphoheptose isomerase is a member of t	84.74
PHA02768	55	hypothetical protein; Provisional	84.62
PF12171	27	zf-C2H2_jaz: Zinc-finger double-stranded RNA-bindi	84.56
PF00702	215	Hydrolase: haloacid dehalogenase-like hydrolase; I	84.22
TIGR03590	279	PseG pseudaminic acid biosynthesis-associated prot	84.18
cd06347	334	PBP1_ABC_ligand_binding_like_12 Type I periplasmic	83.91
cd06279	283	PBP1_LacI_like_3 Ligand-binding domain of uncharac	83.88
PRK13937	188	phosphoheptose isomerase; Provisional	83.84
PRK00414	192	gmhA phosphoheptose isomerase; Reviewed	83.76
COG1609	333	PurR Transcriptional regulators [Transcription]	83.39
cd06360	336	PBP1_alkylbenzenes_like Type I periplasmic binding	83.21
cd06280	263	PBP1_LacI_like_4 Ligand-binding domain of uncharac	83.02
PRK09552	219	mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosp	82.94
cd06342	334	PBP1_ABC_LIVBP_like Type I periplasmic ligand-bind	82.93
PRK13936	197	phosphoheptose isomerase; Provisional	82.74
cd01391	269	Periplasmic_Binding_Protein_Type_1 Type 1 periplas	82.54
PRK10423	327	transcriptional repressor RbsR; Provisional	82.38
PRK10703	341	DNA-binding transcriptional repressor PurR; Provis	81.95
cd06272	261	PBP1_hexuronate_repressor_like Ligand-binding doma	81.57
PF12756	100	zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB:	81.34
cd01464	176	vWA_subfamily VWA subfamily: Von Willebrand factor	80.69
TIGR02137	203	HSK-PSP phosphoserine phosphatase/homoserine phosp	80.5
cd06304	260	PBP1_BmpA_like Periplasmic binding component of a	80.27
PHA00733	128	hypothetical protein	80.08

>cd06167 LabA_like LabA_like proteins

Probab=99.38  E-value=1.6e-12  Score=101.63  Aligned_cols=84  Identities=27%  Similarity=0.335  Sum_probs=77.1

Q ss_pred             CchhhhhhhhcEEEEEccc-----cchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC--
Q 046085          104 YSLVVKLKRVWFWVRTMSD-----KLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM--  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~d-----KpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~--  176 (230)
                      -.+..+|++.||.|..++.     .++++|++|..+|++.+..++++++||||.|+||+++++.+|++|.+++|+|-.  
T Consensus        55 ~~~~~~L~~~g~~~~~~~~~~~~~~~~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~i~~lr~~G~~V~v~~~~~~  134 (149)
T cd06167          55 RGFLDALRRLGFEPIQKPLRTRGSGKKGVDVALAIDALELAYKRRIDTIVLVSGDSDFVPLVERLRELGKRVIVVGFEAK  134 (149)
T ss_pred             HHHHHHHHHCCcEEEEEcceecCCcccCccHHHHHHHHHHhhhcCCCEEEEEECCccHHHHHHHHHHcCCEEEEEccCcc
Confidence            4577899999999999884     568999999999999999889999999999999999999999999999999986  


Q ss_pred             CCchhhhhhhc
Q 046085          177 NDGTLKRIADR  187 (230)
Q Consensus       177 ~~~aL~r~AD~  187 (230)
                      +...|.+.||.
T Consensus       135 ~s~~L~~~~d~  145 (149)
T cd06167         135 TSRELRKAADR  145 (149)
T ss_pred             ChHHHHHhCCc
Confidence            77899999983

A well conserved group of bacterial proteins with no defined function. LabA, a member from Synechococcus elongatus PCC 7942, has been shown to play a role in cyanobacterial circadian timing. It is required for negative feedback regulation of the autokinase/autophosphatase KaiC, a central component of the circadian clock system. In particular, LabA seems necessary for KaiC-dependent repression of gene expression.

>TIGR00288 conserved hypothetical protein TIGR00288

Probab=99.36  E-value=1.8e-12  Score=109.44  Aligned_cols=79  Identities=20%  Similarity=0.233  Sum_probs=71.9

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC--CCchhh
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM--NDGTLK  182 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~--~~~aL~  182 (230)
                      +|...|++.||.+..+..   +.|++|.-++|+++.+..+|+|||||.|+||++++..+|++|.+++|||-.  ++.+|.
T Consensus        70 ~l~~~l~~~Gf~pv~~kG---~~Dv~laIDame~~~~~~iD~~vLvSgD~DF~~Lv~~lre~G~~V~v~g~~~~ts~~L~  146 (160)
T TIGR00288        70 KLIEAVVNQGFEPIIVAG---DVDVRMAVEAMELIYNPNIDAVALVTRDADFLPVINKAKENGKETIVIGAEPGFSTALQ  146 (160)
T ss_pred             HHHHHHHHCCceEEEecC---cccHHHHHHHHHHhccCCCCEEEEEeccHhHHHHHHHHHHCCCEEEEEeCCCCChHHHH
Confidence            467789999999775533   999999999999998889999999999999999999999999999999944  888999


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       147 ~acd  150 (160)
T TIGR00288       147 NSAD  150 (160)
T ss_pred             HhcC
Confidence            9999

This family of orthologs is restricted to but universal among the completed archaeal genomes so far. Eubacterial proteins showing at least local homology include slr1870 from Synechocystis PCC6803 and two proteins from Aquifex aeolicusr, none of which is characterized.

>PF01936 NYN: NYN domain; InterPro: IPR021139 This highly conserved domain has no known function

Probab=99.30  E-value=7.9e-12  Score=95.90  Aligned_cols=83  Identities=25%  Similarity=0.281  Sum_probs=58.9

Q ss_pred             chhhhhhhhcEEEEEccc------cchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecC--C
Q 046085          105 SLVVKLKRVWFWVRTMSD------KLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGY--M  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~d------KpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd--~  176 (230)
                      .+-..|++.||.|..++.      ..+++|++|..+|+..+.+...+.+||||.|+||+++++.+|++|.+++|+|.  .
T Consensus        51 ~~~~~L~~~g~~v~~~~~~~~~~~~k~~~D~~l~~d~~~~~~~~~~d~ivLvSgD~Df~~~v~~l~~~g~~V~v~~~~~~  130 (146)
T PF01936_consen   51 SFQEALQRAGIKVRHFPLRKRGGGGKKGVDVALAVDILELAYENPPDTIVLVSGDSDFAPLVRKLRERGKRVIVVGAEDS  130 (146)
T ss_dssp             HHHHHHHHHT-EEEE------S---S---HHHHHHHHHHHG--GG-SEEEEE---GGGHHHHHHHHHH--EEEEEE-GGG
T ss_pred             hHHHHHHhCeeeEEeeecccccccccCCcHHHHHHHHHHHhhccCCCEEEEEECcHHHHHHHHHHHHcCCEEEEEEeCCC
Confidence            345678999999987765      56899999999999999877789999999999999999999999999999993  3


Q ss_pred             CCchhhhhhhc
Q 046085          177 NDGTLKRIADR  187 (230)
Q Consensus       177 ~~~aL~r~AD~  187 (230)
                      ....|.+.||.
T Consensus       131 ~s~~L~~~ad~  141 (146)
T PF01936_consen  131 ASEALRSAADE  141 (146)
T ss_dssp             S-HHHHHHSSE
T ss_pred             CCHHHHHhcCE
Confidence            77899999993

However it contains many conserved aspartates, suggesting an enzymatic function such as an endonuclease or glycosyl hydrolase.; PDB: 2QIP_A.

>COG1432 Uncharacterized conserved protein [Function unknown]

Probab=98.36  E-value=1.2e-06  Score=73.91  Aligned_cols=81  Identities=26%  Similarity=0.292  Sum_probs=66.5

Q ss_pred             hhhhhhhcEEEEEccccch--------HHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC--
Q 046085          107 VVKLKRVWFWVRTMSDKLQ--------AADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM--  176 (230)
Q Consensus       107 a~eLrRAGv~VrtV~dKpq--------AAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~--  176 (230)
                      -.+++.-|+-|.+.+-+.-        .=|+-+.-+|+..+++-.+|+++|||.|.||.++++.|+++|.+|+|+|-+  
T Consensus        66 ~~~~~~~g~~v~~~~~~~~~~~~~~k~~vDv~la~D~~~l~~~~~~D~ivl~SgD~DF~p~v~~~~~~G~rv~v~~~~~~  145 (181)
T COG1432          66 EYELRSDGFTVVTSNLDGFTDLRITKGDVDVELAVDAMELADKKNVDTIVLFSGDGDFIPLVEAARDKGKRVEVAGIEPM  145 (181)
T ss_pred             HHHHhhcCcEEEeccccccCcccccccCcchhhHHHHHHhhcccCCCEEEEEcCCccHHHHHHHHHHcCCEEEEEecCCc
Confidence            3466777777765544221        337778889999998889999999999999999999999999999999987  


Q ss_pred             CCchhhhhhhc
Q 046085          177 NDGTLKRIADR  187 (230)
Q Consensus       177 ~~~aL~r~AD~  187 (230)
                      +..+|++.||.
T Consensus       146 ~s~~L~~~aD~  156 (181)
T COG1432         146 TSSDLRNAADY  156 (181)
T ss_pred             CHHHHHHhhcc
Confidence            66899999993

>PF00096 zf-C2H2: Zinc finger, C2H2 type; InterPro: IPR007087 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=96.25  E-value=0.0025  Score=36.62  Aligned_cols=23  Identities=17%  Similarity=0.322  Sum_probs=20.8

Q ss_pred             ccccccCCCcccCchHHHHHHHHHh
Q 046085           33 VLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        33 ~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      -.|+.|| ..|.+...|.+|-+. |
T Consensus         1 y~C~~C~-~~f~~~~~l~~H~~~-H   23 (23)
T PF00096_consen    1 YKCPICG-KSFSSKSNLKRHMRR-H   23 (23)
T ss_dssp             EEETTTT-EEESSHHHHHHHHHH-H
T ss_pred             CCCCCCC-CccCCHHHHHHHHhH-C
Confidence            0799999 999999999999987 6

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C2H2 zinc finger is the classical zinc finger domain. The two conserved cysteines and histidines co-ordinate a zinc ion. The following pattern describes the zinc finger: #-X-C-X(1-5)-C-X3-#-X5-#-X2-H-X(3-6)-[H/C], where X can be any amino acid, and numbers in brackets indicate the number of residues. The positions marked # are those that are important for the stable fold of the zinc finger. The final position can be either his or cys. The C2H2 zinc finger is composed of two short beta strands followed by an alpha helix. The amino terminal part of the helix binds the major groove in DNA binding zinc fingers. The accepted consensus binding sequence for Sp1 is usually defined by the asymmetric hexanucleotide core GGGCGG but this sequence does not include, among others, the GAG (=CTC) repeat that constitutes a high-affinity site for Sp1 binding to the wt1 promoter []. This entry represents the classical C2H2 zinc finger domain. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding, 0005622 intracellular; PDB: 2D9H_A 2EPC_A 1SP1_A 1VA3_A 2WBT_B 2ELR_A 2YTP_A 2YTT_A 1VA1_A 2ELO_A ....

>PF13894 zf-C2H2_4: C2H2-type zinc finger; PDB: 2ELX_A 2EPP_A 2DLK_A 1X6H_A 2EOU_A 2EMB_A 2GQJ_A 2CSH_A 2WBT_B 2ELM_A

Probab=96.21  E-value=0.0029  Score=35.42  Aligned_cols=23  Identities=17%  Similarity=0.300  Sum_probs=19.8

Q ss_pred             cccccCCCcccCchHHHHHHHHHh
Q 046085           34 LVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      .|++|| ..|.+...|..|.++-|
T Consensus         2 ~C~~C~-~~~~~~~~l~~H~~~~H   24 (24)
T PF13894_consen    2 QCPICG-KSFRSKSELRQHMRTHH   24 (24)
T ss_dssp             E-SSTS--EESSHHHHHHHHHHHS
T ss_pred             CCcCCC-CcCCcHHHHHHHHHhhC
Confidence            799999 99999999999999876

...

>cd01545 PBP1_SalR Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators

Probab=95.37  E-value=0.058  Score=44.12  Aligned_cols=71  Identities=8%  Similarity=-0.033  Sum_probs=54.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      +|+..+++..|+.+.++...-..+  .....+.+.+...+++.|++++.+.+...++..+.+.|+..|+||-.
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvv~i~~~   89 (270)
T cd01545          19 LGALDACRDTGYQLVIEPCDSGSP--DLAERVRALLQRSRVDGVILTPPLSDNPELLDLLDEAGVPYVRIAPG   89 (270)
T ss_pred             HHHHHHHHhCCCeEEEEeCCCCch--HHHHHHHHHHHHCCCCEEEEeCCCCCccHHHHHHHhcCCCEEEEecC
Confidence            578888999999988664332221  25566666666689999999987655678899999999999999854

Ligand-binding domain of DNA transcription repressor SalR, a member of the LacI-GalR family of bacterial transcription regulators. The SalR binds to glucose based compound Salicin which is chemically related to aspirin. The ligand-binding of SalR is structurally homologous to the periplasmic sugar-binding domain of ABC-transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand bind

>cd06305 PBP1_methylthioribose_binding_like Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=95.22  E-value=0.11  Score=42.63  Aligned_cols=70  Identities=4%  Similarity=-0.080  Sum_probs=52.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+....+.   ....+..+.+.+.++|.|++.+.+++ ..++++.+.++|+..|.++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~l~~~~~~~vdgii~~~~~~~~~~~~i~~~~~~~ipvV~~~~~   89 (273)
T cd06305          19 AGTKAEAEALGGDLRVYDAGGDD---AKQADQIDQAIAQKVDAIIIQHGRAEVLKPWVKRALDAGIPVVAFDVD   89 (273)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEEecCChhhhHHHHHHHHHcCCCEEEecCC
Confidence            46788899999998876543332   33444555444689999999876654 578899999999999999875

Methylthioribose-binding protein-like of ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. The sugar-binding domain of the periplasmic proteins in this group is also homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR), DNA-binding transcriptional repressors such as LacI and GalR.

>PF13913 zf-C2HC_2: zinc-finger of a C2HC-type

Probab=95.15  E-value=0.014  Score=35.69  Aligned_cols=22  Identities=32%  Similarity=0.369  Sum_probs=18.7

Q ss_pred             cccccccCCCcccCchHHHHHHHH
Q 046085           32 YVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        32 y~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      .+.|+.|| |+| +.+.|.+|.+.
T Consensus         2 l~~C~~Cg-R~F-~~~~l~~H~~~   23 (25)
T PF13913_consen    2 LVPCPICG-RKF-NPDRLEKHEKI   23 (25)
T ss_pred             CCcCCCCC-CEE-CHHHHHHHHHh
Confidence            45799999 999 88999999763

>cd05013 SIS_RpiR RpiR-like protein

Probab=94.54  E-value=0.26  Score=36.69  Aligned_cols=73  Identities=23%  Similarity=0.124  Sum_probs=52.0

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++.-|.+.|..+.++++--      ........+  ..-+|++++|-.   .+...+++.|+++|.++|+|.+.....+.
T Consensus        31 ~~~~l~~~~~~~~~~~~~~------~~~~~~~~~--~~~~~~i~iS~~g~~~~~~~~~~~a~~~g~~iv~iT~~~~~~l~  102 (139)
T cd05013          31 LAYKLLRLGKPVVLLSDPH------LQLMSAANL--TPGDVVIAISFSGETKETVEAAEIAKERGAKVIAITDSANSPLA  102 (139)
T ss_pred             HHHHHHHcCCceEEecCHH------HHHHHHHcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEcCCCCChhH
Confidence            4556788888888775521      111111123  234888888854   44777899999999999999998778899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       103 ~~~d  106 (139)
T cd05013         103 KLAD  106 (139)
T ss_pred             HhcC
Confidence            9999

RpiR contains a SIS (Sugar ISomerase) domain, which is found in many phosphosugar isomerases and phosphosugar binding proteins. In E. coli, rpiR negatively regulates the expression of rpiB gene. Both rpiB and rpiA are ribose phosphate isomerases that catalyze the reversible reactions of ribose 5-phosphate into ribulose 5-phosphate.

>cd06295 PBP1_CelR Ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators

Probab=94.46  E-value=0.18  Score=41.75  Aligned_cols=66  Identities=11%  Similarity=0.067  Sum_probs=49.3

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..+++..|+.+..+.-.++  +   ...+.+++...++|+|++++.+.+ ...++.+.+.|..+|++|-.
T Consensus        31 gi~~~~~~~g~~~~v~~~~~~--~---~~~~~~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   96 (275)
T cd06295          31 GIADALAERGYDLLLSFVSSP--D---RDWLARYLASGRADGVILIGQHDQ-DPLPERLAETGLPFVVWGRP   96 (275)
T ss_pred             HHHHHHHHcCCEEEEEeCCch--h---HHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEECCc
Confidence            567888899999886654444  1   234556665679999999886654 56789999999999999854

This group includes the ligand binding domain of a transcription regulator of cellulose genes, CelR, which is highly homologous to the LacI-GalR family of bacterial transcription regulators. The binding of CelR to the celE promoter is inhibited specifically by cellobiose. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn chang

>TIGR02634 xylF D-xylose ABC transporter, substrate-binding protein

Probab=94.44  E-value=0.23  Score=43.06  Aligned_cols=70  Identities=14%  Similarity=0.068  Sum_probs=54.6

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~~  177 (230)
                      |+..+++..|+.+...+.-.   |.+...++.+.|-+.++|.|++++.+++ ..+.++.+++.|...|+++...
T Consensus        19 ~i~~~a~~~g~~v~~~~~~~---~~~~q~~~i~~l~~~~vDgIIi~~~~~~~~~~~l~~~~~~~iPvV~~d~~~   89 (302)
T TIGR02634        19 IFVAAAESLGAKVFVQSANG---NEAKQISQIENLIARGVDVLVIIPQNGQVLSNAVQEAKDEGIKVVAYDRLI   89 (302)
T ss_pred             HHHHHHHhcCCEEEEEeCCC---CHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHHHCCCeEEEecCcC
Confidence            77888999999987654322   3355556666666899999999998765 5789999999999999998653

Members of this family are periplasmic (when in Gram-negative bacteria) binding proteins for D-xylose import by a high-affinity ATP-binding cassette (ABC) transporter.

>cd01542 PBP1_TreR_like Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=94.40  E-value=0.2  Score=40.89  Aligned_cols=69  Identities=7%  Similarity=0.072  Sum_probs=49.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.........   +-...+.+.|.+.++|.|++++.+.+ ..+++.+++.|..+|++|..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~~dgii~~~~~~~-~~~~~~~~~~~ipvv~~~~~   87 (259)
T cd01542          19 KGILAALYENGYQMLLMNTNFSI---EKEIEALELLARQKVDGIILLATTIT-DEHREAIKKLNVPVVVVGQD   87 (259)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHhcCCCCEEEEecc
Confidence            57788899999999866554433   22223333344689999999987643 57888889999999999865

Ligand-binding domain of DNA transcription repressor specific for trehalose (TreR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of TreR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding wh

>cd06312 PBP1_ABC_sugar_binding_like_4 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=94.29  E-value=0.19  Score=41.78  Aligned_cols=71  Identities=11%  Similarity=-0.055  Sum_probs=51.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+-.+++..|+.|.......  .|..-...+.+.|...+++.+++++.+.+ +...++.++++|..+|+++..
T Consensus        20 ~g~~~~~~~~g~~v~~~~~~~--~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~   91 (271)
T cd06312          20 NGAEDAAKDLGVDVEYRGPET--FDVADMARLIEAAIAAKPDGIVVTIPDPDALDPAIKRAVAAGIPVISFNAG   91 (271)
T ss_pred             HHHHHHHHHhCCEEEEECCCC--CCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCeEEEeCCC
Confidence            467778888999998764432  12233334444454689999999987765 678899999999999999864

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06318 PBP1_ABC_sugar_binding_like_9 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=94.14  E-value=0.27  Score=40.71  Aligned_cols=70  Identities=11%  Similarity=0.024  Sum_probs=51.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.|.......+.   +......+.|-..++|.|++.+.+++ +.++++.|.++|...|+++..
T Consensus        19 ~~i~~~~~~~g~~v~~~~~~~~~---~~~~~~i~~~~~~~~Dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (282)
T cd06318          19 EAAKAHAKALGYELISTDAQGDL---TKQIADVEDLLTRGVNVLIINPVDPEGLVPAVAAAKAAGVPVVVVDSS   89 (282)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCH---HHHHHHHHHHHHcCCCEEEEecCCccchHHHHHHHHHCCCCEEEecCC
Confidence            58888999999998765433232   33333444445789999999876654 357889999999999999864

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06324 PBP1_ABC_sugar_binding_like_13 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=93.98  E-value=0.22  Score=42.89  Aligned_cols=70  Identities=14%  Similarity=0.043  Sum_probs=52.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhc--CcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKR--RFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r--~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+....   |..-...+.+.|.+.  ++|.|++.+.++....+++.++++|+.+|+++..
T Consensus        20 ~gi~~~~~~~g~~v~~~~~~~---~~~~~~~~i~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~   91 (305)
T cd06324          20 RFMQAAADDLGIELEVLYAER---DRFLMLQQARTILQRPDKPDALIFTNEKSVAPELLRLAEGAGVKLFLVNSG   91 (305)
T ss_pred             HHHHHHHHhcCCeEEEEeCCC---CHHHHHHHHHHHHHhccCCCEEEEcCCccchHHHHHHHHhCCCeEEEEecC
Confidence            478888999999987664322   233344455555578  9999999876655678899999999999999865

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06281 PBP1_LacI_like_5 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=93.88  E-value=0.29  Score=40.55  Aligned_cols=71  Identities=8%  Similarity=0.008  Sum_probs=50.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.|-.....-+.   .....+.+.|...+++++++++.+.+-..+++.++++|...|+++...
T Consensus        19 ~~i~~~a~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~ipvV~i~~~~   89 (269)
T cd06281          19 SGAEDRLRAAGYSLLIANSLNDP---ERELEILRSFEQRRMDGIIIAPGDERDPELVDALASLDLPIVLLDRDM   89 (269)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCh---HHHHHHHHHHHHcCCCEEEEecCCCCcHHHHHHHHhCCCCEEEEeccc
Confidence            47788899999998755332222   222233333446799999999876665678889999999999998653

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06282 PBP1_GntR_like_2 Ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=93.87  E-value=0.3  Score=39.69  Aligned_cols=70  Identities=10%  Similarity=0.041  Sum_probs=50.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|.......+..+   ...+.+.|-..++|.+++.+.+.+...+++.++++|..+|+++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~   88 (266)
T cd06282          19 QGIQEEARAAGYSLLLATTDYDAER---EADAVETLLRQRVDGLILTVADAATSPALDLLDAERVPYVLAYND   88 (266)
T ss_pred             HHHHHHHHHCCCEEEEeeCCCCHHH---HHHHHHHHHhcCCCEEEEecCCCCchHHHHHHhhCCCCEEEEecc
Confidence            3677888899999987655433322   222333343579999999887766566889999999999999754

This group includes the ligand-binding domain of putative DNA transcription repressors highly similar to that of the repressor specific for gluconate (GntR) which is a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding

>PF13407 Peripla_BP_4: Periplasmic binding protein domain; PDB: 3BRS_B 3GBP_A 3GA5_A 1GCG_A 1GCA_A 3H75_A 3D02_A 3L49_B 3EJW_B 3T95_A

Probab=93.86  E-value=0.32  Score=39.96  Aligned_cols=70  Identities=7%  Similarity=0.017  Sum_probs=52.5

Q ss_pred             CchhhhhhhhcEEEEEc-cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTM-SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV-~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      -|+...++..|+.+.++ ....+.  ......+..++ +.++|.|++.+-|+ ....++++|.+.|+.+|.+...
T Consensus        18 ~g~~~~a~~~g~~~~~~~~~~~d~--~~q~~~i~~~i-~~~~d~Iiv~~~~~~~~~~~l~~~~~~gIpvv~~d~~   89 (257)
T PF13407_consen   18 KGAKAAAKELGYEVEIVFDAQNDP--EEQIEQIEQAI-SQGVDGIIVSPVDPDSLAPFLEKAKAAGIPVVTVDSD   89 (257)
T ss_dssp             HHHHHHHHHHTCEEEEEEESTTTH--HHHHHHHHHHH-HTTESEEEEESSSTTTTHHHHHHHHHTTSEEEEESST
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCCH--HHHHHHHHHHH-HhcCCEEEecCCCHHHHHHHHHHHhhcCceEEEEecc
Confidence            46778889999999987 333222  23345555556 58999999996665 6889999999999999998765

...

>cd06270 PBP1_GalS_like Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism

Probab=93.79  E-value=0.31  Score=40.20  Aligned_cols=69  Identities=9%  Similarity=0.003  Sum_probs=50.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+....   |.+...++.+.|.++++|.+++++.+.+. ..++.+.+.|...|+++..
T Consensus        19 ~g~~~~a~~~g~~~~~~~~~~---~~~~~~~~i~~~~~~~vdgii~~~~~~~~-~~~~~~~~~~ipvV~~~~~   87 (268)
T cd06270          19 SGVESVARKAGKHLIITAGHH---SAEKEREAIEFLLERRCDALILHSKALSD-DELIELAAQVPPLVLINRH   87 (268)
T ss_pred             HHHHHHHHHCCCEEEEEeCCC---chHHHHHHHHHHHHcCCCEEEEecCCCCH-HHHHHHhhCCCCEEEEecc
Confidence            477888999999998665433   23445566666657899999998864332 2388899999999999864

Ligand binding domain of DNA transcription iso-repressor GalS, which is one of two regulatory proteins involved in galactose transport and metabolism. Transcription of the galactose regulon genes is regulated by Gal iso-repressor (GalS) and Gal repressor (GalR) in different ways, but both repressors recognize the same DNA binding site in the absence of D-galactose. GalS is a dimeric protein like GalR,and its major role is in regulating expression of the high-affinity galactose transporter encoded by the mgl operon, whereas GalR is the exclusive regulator of galactose permease, the low-affinity galactose transporter. GalS and GalR are members of the LacI-GalR family of transcription regulators and both contain the type I periplasmic binding protein-like fold. Hence, they are homologous to the periplasmic sugar bindi

>PF13912 zf-C2H2_6: C2H2-type zinc finger; PDB: 1JN7_A 1FU9_A 2L1O_A 1NJQ_A 2EN8_A 2EMM_A 1FV5_A 1Y0J_B 2L6Z_B

Probab=93.77  E-value=0.03  Score=33.20  Aligned_cols=23  Identities=17%  Similarity=0.177  Sum_probs=20.9

Q ss_pred             CcccccccCCCcccCchHHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      || .|.+|+ ..|.+...|..|-+.
T Consensus         1 ~~-~C~~C~-~~F~~~~~l~~H~~~   23 (27)
T PF13912_consen    1 PF-ECDECG-KTFSSLSALREHKRS   23 (27)
T ss_dssp             SE-EETTTT-EEESSHHHHHHHHCT
T ss_pred             CC-CCCccC-CccCChhHHHHHhHH
Confidence            78 999999 999999999999743

>cd05014 SIS_Kpsf KpsF-like protein

Probab=93.49  E-value=0.15  Score=38.71  Aligned_cols=79  Identities=13%  Similarity=0.090  Sum_probs=55.2

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcC---CcchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSD---DSDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSD---DSDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|+.+..+.+. .    .+. +....+  ..-|+++++|-   ..+...+++.|+++|+++++|-+..+..|.
T Consensus        18 ~~~~l~~~g~~~~~~~~~-~----~~~-~~~~~~--~~~d~vi~iS~sG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la   89 (128)
T cd05014          18 IAATLSSTGTPAFFLHPT-E----ALH-GDLGMV--TPGDVVIAISNSGETDELLNLLPHLKRRGAPIIAITGNPNSTLA   89 (128)
T ss_pred             HHHHhhcCCCceEEcccc-h----hhc-cccCcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCchh
Confidence            455567778888866442 1    111 111112  23488888884   478999999999999999999998778999


Q ss_pred             hhhh-cccccc
Q 046085          183 RIAD-RLKWAY  192 (230)
Q Consensus       183 r~AD-~leW~~  192 (230)
                      +.|| .|....
T Consensus        90 ~~ad~~l~~~~  100 (128)
T cd05014          90 KLSDVVLDLPV  100 (128)
T ss_pred             hhCCEEEECCC
Confidence            9999 455443

KpsF is an arabinose-5-phosphate isomerase which contains SIS (Sugar ISomerase) domains. SIS domains are found in many phosphosugar isomerases and phosphosugar binding proteins. KpsF catalyzes the reversible reaction of ribulose 5-phosphate to arabinose 5-phosphate. This is the second step in the CMP-Kdo biosynthesis pathway.

>cd01539 PBP1_GGBP Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species

Probab=93.42  E-value=0.43  Score=41.16  Aligned_cols=70  Identities=13%  Similarity=-0.049  Sum_probs=52.2

Q ss_pred             Cchhhhhhh--hcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKR--VWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrR--AGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++..  .|+.+...+..   .|.+-...+++.|.+.+++.|++.+.|++ +.++++.|++.|..+|+++..
T Consensus        19 ~gi~~~a~~~~~g~~~~~~~~~---~~~~~q~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~   91 (303)
T cd01539          19 KNLEDIQKENGGKVEFTFYDAK---NNQSTQNEQIDTALAKGVDLLAVNLVDPTAAQTVINKAKQKNIPVIFFNRE   91 (303)
T ss_pred             HHHHHHHHhhCCCeeEEEecCC---CCHHHHHHHHHHHHHcCCCEEEEecCchhhHHHHHHHHHHCCCCEEEeCCC
Confidence            467788888  88888755432   23344555555555789999999887766 678999999999999999764

Periplasmic glucose/galactose-binding protein (GGBP) involved in chemotaxis towards, and active transport of, glucose and galactose in various bacterial species. GGBP is a member of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic GGBP is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>cd01541 PBP1_AraR Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators

Probab=93.38  E-value=0.41  Score=39.62  Aligned_cols=70  Identities=7%  Similarity=-0.046  Sum_probs=49.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc----hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD----FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD----F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-+....-+.   ....++.+.|...++|+|++.+.+++    ....++.+.+.|+.+|.+|..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~~~~ipvV~~~~~   92 (273)
T cd01541          19 RGIESVLSEKGYSLLLASTNNDP---ERERKCLENMLSQGIDGLIIEPTKSALPNPNIDLYLKLEKLGIPYVFINAS   92 (273)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEeccccccccccHHHHHHHHHCCCCEEEEecC
Confidence            47788999999999755432222   22233333344689999999876543    457889999999999999864

Ligand-binding domain of DNA transcription repressor specific for arabinose (AraR) which is a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of AraR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which i

>cd06306 PBP1_TorT-like TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria

Probab=93.38  E-value=0.41  Score=40.08  Aligned_cols=70  Identities=7%  Similarity=-0.010  Sum_probs=50.3

Q ss_pred             CchhhhhhhhcEEEEEcccc--chHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDK--LQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dK--pqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-.+...  +++   ....+..+.+.+.++|.|++++-+.+....+..++.+|..+|+++..
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~~~i~~~~~~~vdgiI~~~~~~~~~~~~~~~~~~giPvV~~~~~   90 (268)
T cd06306          19 YGMVEEAKRLGVSLKLLEAGGYPNL---AKQIAQLEDCAAWGADAILLGAVSPDGLNEILQQVAASIPVIALVND   90 (268)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCCCH---HHHHHHHHHHHHcCCCEEEEcCCChhhHHHHHHHHHCCCCEEEeccC
Confidence            47888999999999866432  222   22323344444689999999987776544678899999999999754

TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type I periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.

>cd06294 PBP1_ycjW_transcription_regulator_like Ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors

Probab=93.34  E-value=0.39  Score=39.27  Aligned_cols=69  Identities=9%  Similarity=0.069  Sum_probs=50.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+...++..|+.+..... ..  +......+...+...++|+|++++.+.+ ..+++.+.++|..+|.++..
T Consensus        24 ~~~~~~~~~~g~~~~~~~~-~~--~~~~~~~~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   92 (270)
T cd06294          24 RGISAVANENGYDISLATG-KN--EEELLEEVKKMIQQKRVDGFILLYSRED-DPIIDYLKEEKFPFVVIGKP   92 (270)
T ss_pred             HHHHHHHHHCCCEEEEecC-CC--cHHHHHHHHHHHHHcCcCEEEEecCcCC-cHHHHHHHhcCCCEEEECCC
Confidence            4778889999998874432 22  1234456666665567999999975544 57788999999999999864

This group includes the ligand-binding domain of uncharacterized transcription regulator ycjW which is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06302 PBP1_LsrB_Quorum_Sensing Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs

Probab=93.21  E-value=0.44  Score=40.91  Aligned_cols=70  Identities=13%  Similarity=0.036  Sum_probs=52.0

Q ss_pred             CchhhhhhhhcEEEEEc-cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTM-SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV-~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.|..+ +...+.   ....++.+.+...++|.|++++-+++ |..+++.+++.|+.+|.|+..
T Consensus        19 ~gi~~~a~~~g~~v~~~~~~~~d~---~~~~~~i~~~~~~~~DgiIi~~~~~~~~~~~~~~~~~~~iPvV~v~~~   90 (298)
T cd06302          19 EGAKEAAKELGVDAIYVGPTTADA---AGQVQIIEDLIAQGVDAIAVVPNDPDALEPVLKKAREAGIKVVTHDSD   90 (298)
T ss_pred             HHHHHHHHHhCCeEEEECCCCCCH---HHHHHHHHHHHhcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEEcCC
Confidence            47888899999999865 333333   23334444444689999999986655 778899999999999999864

Periplasmic binding domain of autoinducer-2 (AI-2) receptor LsrB from Salmonella typhimurium and its close homologs from other bacteria. The members of this group are homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transporters of many sugar based solutes in bacteria and archaea and that are a member of the type I periplasmic binding protein superfamily. LsrB binds a chemically distinct form of the AI-2 signal that lacks boron, in contrast to the Vibrio harveyi AI-2 signaling molecule that has an unusual furanosyl borate diester. Hence, many bacteria coordinate their gene expression according to the local density of their population by producing species specific AI-2. This process of quorum sensing allows LsrB to function as a periplasmic AI-2 binding p

>cd06313 PBP1_ABC_sugar_binding_like_5 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=93.21  E-value=0.43  Score=40.19  Aligned_cols=70  Identities=14%  Similarity=0.039  Sum_probs=51.6

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|.......+.   .-..+..+.|..+++|.|++.+.+++ ..++++.+.++|+.+|+++..
T Consensus        19 ~gi~~~~~~~G~~~~~~~~~~d~---~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (272)
T cd06313          19 QAADEAGKLLGVDVTWYGGALDA---VKQVAAIENMASQGWDFIAVDPLGIGTLTEAVQKAIARGIPVIDMGTL   89 (272)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCH---HHHHHHHHHHHHcCCCEEEEcCCChHHhHHHHHHHHHCCCcEEEeCCC
Confidence            57778888899999876544333   22233333344689999999987766 467889999999999999865

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>smart00355 ZnF_C2H2 zinc finger

Probab=93.19  E-value=0.071  Score=29.64  Aligned_cols=23  Identities=17%  Similarity=0.186  Sum_probs=20.7

Q ss_pred             cccccCCCcccCchHHHHHHHHHhH
Q 046085           34 LVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .|..|| ..|.+...|..|.+ +|.
T Consensus         2 ~C~~C~-~~f~~~~~l~~H~~-~H~   24 (26)
T smart00355        2 RCPECG-KVFKSKSALKEHMR-THX   24 (26)
T ss_pred             CCCCCc-chhCCHHHHHHHHH-Hhc
Confidence            799999 99999999999987 664

>cd01540 PBP1_arabinose_binding Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily

Probab=93.18  E-value=0.47  Score=39.61  Aligned_cols=68  Identities=10%  Similarity=0.006  Sum_probs=48.9

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcch-HHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF-VEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF-~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..+++..|+.+..+... +. + .....+..++ ..++|.|++.+.|+++ ..+++.+...|+.+|+++..
T Consensus        20 gi~~~~~~~g~~~~~~~~~-~~-~-~~~~~i~~~~-~~~~dgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~   88 (289)
T cd01540          20 FAKKAAKEKGFTVVKIDVP-DG-E-KVLSAIDNLG-AQGAKGFVICVPDVKLGPAIVAKAKAYNMKVVAVDDR   88 (289)
T ss_pred             HHHHHHHHcCCEEEEccCC-CH-H-HHHHHHHHHH-HcCCCEEEEccCchhhhHHHHHHHHhCCCeEEEecCC
Confidence            6778888899998866332 32 1 1222333344 5899999999988765 45789999999999999854

Periplasmic L-arabinose-binding protein (ABP), a member of a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. ABP is only involved in transport contrary to other related sugar-binding proteins such as the glucose/galactose-binding protein (GGBP) and the ribose-binding protein (RBP), both of which are involved in chemotaxis as well as transport. The periplasmic ABP consists of two alpha/beta globular domains connected by a three-stranded hinge, a Venus flytrap-like domain, which undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, ABP is homologous to the ligand-binding domain of eukaryotic receptors such as metabotropic glutamate receptor (mGluR) and DNA-binding transcriptional repressors such a

>cd01538 PBP1_ABC_xylose_binding Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily

Probab=93.08  E-value=0.55  Score=39.89  Aligned_cols=70  Identities=11%  Similarity=0.034  Sum_probs=51.6

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+....+.   .-...+.+.+...+++.|++++.+++ ...+++.+++.|..+|+++..
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~l~~l~~~~ipvV~~~~~   89 (288)
T cd01538          19 PNFEAALKELGAEVIVQNANGDP---AKQISQIENMIAKGVDVLVIAPVDGEALASAVEKAADAGIPVIAYDRL   89 (288)
T ss_pred             HHHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEEecCChhhHHHHHHHHHHCCCCEEEECCC
Confidence            57888999999999976553322   22233333344689999999987655 578999999999999999865

Periplasmic xylose-binding component of the ABC-type transport systems that belong to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes a transition from an open to a closed conformational state upon ligand binding. Moreover, the periplasmic xylose-binding protein is homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR.

>cd06299 PBP1_LacI_like_13 Ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia

Probab=93.02  E-value=0.5  Score=38.65  Aligned_cols=69  Identities=10%  Similarity=0.038  Sum_probs=49.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.|.+++..-   |..-...+.+.+.+.++|.|++.+.+.+- ..++.++++|..+|++|..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~l~~~~ipvV~~~~~   87 (265)
T cd06299          19 TAIQDAASAAGYSTIIGNSDE---NPETENRYLDNLLSQRVDGIIVVPHEQSA-EQLEDLLKRGIPVVFVDRE   87 (265)
T ss_pred             HHHHHHHHHcCCEEEEEeCCC---CHHHHHHHHHHHHhcCCCEEEEcCCCCCh-HHHHHHHhCCCCEEEEecc
Confidence            378888899999998775421   22223334444447899999998876553 5689999999999999875

This group includes the ligand-binding domain of DNA-binding regulatory protein from Corynebacterium glutamicum which has a unique ability to produce significant amounts of L-glutamate directly from cheap sugar and ammonia. This regulatory protein is a member of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial trans

>cd06316 PBP1_ABC_sugar_binding_like_7 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.93  E-value=0.35  Score=40.91  Aligned_cols=71  Identities=6%  Similarity=-0.045  Sum_probs=50.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+.....-+  ....++.+.+...++|.|++++.+.+ ..+++..++++|+..|+++..
T Consensus        19 ~gi~~~a~~~g~~~~~~~~~~~~~--~~~~~~l~~~~~~~~dgiii~~~~~~~~~~~i~~~~~~~iPvV~~~~~   90 (294)
T cd06316          19 RGAKDEFAKLGIEVVATTDAQFDP--AKQVADIETTISQKPDIIISIPVDPVSTAAAYKKVAEAGIKLVFMDNV   90 (294)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCCH--HHHHHHHHHHHHhCCCEEEEcCCCchhhhHHHHHHHHcCCcEEEecCC
Confidence            477888999999887554322212  22323333333689999999887765 478899999999999999875

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06320 PBP1_allose_binding Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis

Probab=92.92  E-value=0.3  Score=40.46  Aligned_cols=73  Identities=11%  Similarity=0.026  Sum_probs=50.2

Q ss_pred             CCchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          103 GYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       103 gygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      -.|+..+++..|+.+..+.- +...|......+.+.+-..+++++|+++.+++ ....+..++++|+.+|.+|..
T Consensus        18 ~~gi~~~~~~~g~~~~~~~~-~~~~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (275)
T cd06320          18 KEGYENEAKKLGVSVDIQAA-PSEGDQQGQLSIAENMINKGYKGLLFSPISDVNLVPAVERAKKKGIPVVNVNDK   91 (275)
T ss_pred             HHHHHHHHHHhCCeEEEEcc-CCCCCHHHHHHHHHHHHHhCCCEEEECCCChHHhHHHHHHHHHCCCeEEEECCC
Confidence            35888899999999885531 11112223334444444679999999876654 457789999999999999864

Periplasmic allose-binding domain of bacterial transport systems that function as a primary receptor of active transport and chemotaxis. The members of this group are belonging to a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Like other periplasmic receptors of the ABC-type transport systems, the allose-binding protein consists of two alpha/beta domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding.

>PF00532 Peripla_BP_1: Periplasmic binding proteins and sugar binding domain of LacI family; InterPro: IPR001761 This family includes the periplasmic binding proteins, and the LacI family transcriptional regulators

Probab=92.92  E-value=0.44  Score=41.69  Aligned_cols=68  Identities=7%  Similarity=0.070  Sum_probs=53.6

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+-.+....+. |  .. +..++|.+++||.|++.|...++..+.+.++. +.-.|+++..
T Consensus        21 ~gIe~~a~~~Gy~l~l~~t~~~~-~--~e-~~i~~l~~~~vDGiI~~s~~~~~~~l~~~~~~-~iPvV~~~~~   88 (279)
T PF00532_consen   21 RGIEQEAREHGYQLLLCNTGDDE-E--KE-EYIELLLQRRVDGIILASSENDDEELRRLIKS-GIPVVLIDRY   88 (279)
T ss_dssp             HHHHHHHHHTTCEEEEEEETTTH-H--HH-HHHHHHHHTTSSEEEEESSSCTCHHHHHHHHT-TSEEEEESS-
T ss_pred             HHHHHHHHHcCCEEEEecCCCch-H--HH-HHHHHHHhcCCCEEEEecccCChHHHHHHHHc-CCCEEEEEec
Confidence            58889999999999865544443 2  22 45556668999999999999998888888877 9999999987

The periplasmic binding proteins are the primary receptors for chemotaxis and transport of many sugar based solutes. The LacI family of proteins consist of transcriptional regulators related to the lac repressor. In this case, generally the sugar binding domain binds a sugar which changes the DNA binding activity of the repressor domain (lacI) [, ].; PDB: 1BAP_A 7ABP_A 6ABP_A 1ABF_A 5ABP_A 2WRZ_B 9ABP_A 1APB_A 1ABE_A 8ABP_A ....

>PRK10653 D-ribose transporter subunit RbsB; Provisional

Probab=92.87  E-value=0.45  Score=40.55  Aligned_cols=71  Identities=10%  Similarity=-0.032  Sum_probs=52.2

Q ss_pred             CCchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcch-HHHHHHHHHcCCeEEEecCC
Q 046085          103 GYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF-VEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       103 gygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF-~~lLr~ARer~l~TVVVGd~  176 (230)
                      -.|+..++++.|+.+-......+.   .-.....+.+...+++.+++.+.+++. ...+..+++.|+.+|+++..
T Consensus        45 ~~~i~~~~~~~G~~~~~~~~~~d~---~~~~~~~~~l~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~  116 (295)
T PRK10653         45 KDGAQKEADKLGYNLVVLDSQNNP---AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRG  116 (295)
T ss_pred             HHHHHHHHHHcCCeEEEecCCCCH---HHHHHHHHHHHHcCCCEEEEcCCChHHHHHHHHHHHHCCCCEEEEccC
Confidence            368899999999998865443322   223344444446899999999877655 57899999999999999864

>cd06303 PBP1_LuxPQ_Quorum_Sensing Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs

Probab=92.87  E-value=0.32  Score=40.97  Aligned_cols=71  Identities=11%  Similarity=0.067  Sum_probs=46.9

Q ss_pred             CchhhhhhhhcEEEEEc--cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecC
Q 046085          104 YSLVVKLKRVWFWVRTM--SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGY  175 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV--~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd  175 (230)
                      .|+..+|+..|+.+...  ...++ .|..-...+.+.|..+++|.|++.+++......++.+.+.+...|++++
T Consensus        20 ~~i~~~~~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vDgiIv~~~~~~~~~~~~~l~~~~~p~V~i~~   92 (280)
T cd06303          20 ASFTARLEELNIPYELTQFSSRPG-IDHRLQSQQLNEALQSKPDYLIFTLDSLRHRKLIERVLASGKTKIILQN   92 (280)
T ss_pred             HHHHHHHHHcCCcEEEEEeccCcc-cCHHHHHHHHHHHHHcCCCEEEEcCCchhhHHHHHHHHhCCCCeEEEeC
Confidence            47888999999777643  22221 1112222333334468999999987665567888888888887788855

Periplasmic binding protein (LuxP) of autoinducer-2 (AI-2) receptor LuxPQ from Vibrio harveyi and its close homologs from other bacteria. The members of this group are highly homologous to a family of periplasmic pentose/hexose sugar-binding proteins that function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea, and that are members of the type I periplasmic binding protein superfamily. The Vibrio harveyi AI-2 receptor consists of two polypeptides, LuxP and LuxQ: LuxP is a periplasmic binding protein that binds AI-2 by clamping it between two domains, LuxQ is an integral membrane protein belonging to the two-component sensor kinase family. Unlike AI-2 bound to the LsrB receptor in Salmonella typhimurium, the Vibrio harveyi AI-2 signaling molecule has an unusual furanosyl borate

>PRK15408 autoinducer 2-binding protein lsrB; Provisional

Probab=92.82  E-value=0.35  Score=43.82  Aligned_cols=71  Identities=11%  Similarity=0.006  Sum_probs=51.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+.+..|+.|....  |..+|.+-+..+.+.|-.++++.|++++-|++ +.+.++.|+++|+.+|.+...
T Consensus        43 ~Gi~~aa~~~G~~v~~~~--~~~~d~~~q~~~i~~li~~~vdgIiv~~~d~~al~~~l~~a~~~gIpVV~~d~~  114 (336)
T PRK15408         43 NGAKEAGKELGVDVTYDG--PTEPSVSGQVQLINNFVNQGYNAIIVSAVSPDGLCPALKRAMQRGVKVLTWDSD  114 (336)
T ss_pred             HHHHHHHHHhCCEEEEEC--CCCCCHHHHHHHHHHHHHcCCCEEEEecCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence            477788889999997522  33334444444444444799999999885544 689999999999999999765

>cd06323 PBP1_ribose_binding Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs

Probab=92.81  E-value=0.69  Score=37.67  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=50.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcch-HHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF-VEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF-~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|.......+..+  ....+..++ ..+++.+++++.+++. ..+++.+++.|+..|.++..
T Consensus        19 ~~i~~~~~~~g~~v~~~~~~~~~~~--~~~~~~~~~-~~~~dgii~~~~~~~~~~~~l~~l~~~~ipvv~~~~~   89 (268)
T cd06323          19 DGAQKEAKELGYELTVLDAQNDAAK--QLNDIEDLI-TRGVDAIIINPTDSDAVVPAVKAANEAGIPVFTIDRE   89 (268)
T ss_pred             HHHHHHHHHcCceEEecCCCCCHHH--HHHHHHHHH-HcCCCEEEEcCCChHHHHHHHHHHHHCCCcEEEEccC
Confidence            4788889999999987665433321  122333334 5789999999877665 36788999999999999875

Periplasmic sugar-binding domain of the thermophilic Thermoanaerobacter tengcongensis ribose binding protein (ttRBP) and its mesophilic homologs. Members of this group are belonging to the type I periplasmic binding protein superfamily, whose members are involved in chemotaxis, ATP-binding cassette transport, and intercellular communication in central nervous system. The thermophilic and mesophilic ribose-binding proteins are structurally very similar, but differ substantially in thermal stability.

>cd06289 PBP1_MalI_like Ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria

Probab=92.69  E-value=0.63  Score=37.89  Aligned_cols=70  Identities=9%  Similarity=0.030  Sum_probs=49.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+...+...+   ......+.+.+.+.++|.|++++.+++-...++.+...|+.+|.++..
T Consensus        19 ~g~~~~a~~~g~~~~~~~~~~~---~~~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~ipvV~~~~~   88 (268)
T cd06289          19 AGLEEVLEEAGYTVFLANSGED---VERQEQLLSTMLEHGVAGIILCPAAGTSPDLLKRLAESGIPVVLVARE   88 (268)
T ss_pred             HHHHHHHHHcCCeEEEecCCCC---hHHHHHHHHHHHHcCCCEEEEeCCCCccHHHHHHHHhcCCCEEEEecc
Confidence            4666778888988875543322   233444445555789999999986654345889999999999999754

This group includes the ligand-binding domain of MalI, a transcription regulator of the maltose system of Escherichia coli and its close homologs from other bacteria. They are members of the LacI-GalR family of repressor proteins which are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PHA00616 hypothetical protein

Probab=92.67  E-value=0.054  Score=37.87  Aligned_cols=27  Identities=19%  Similarity=0.379  Sum_probs=24.4

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      || .|+-|| ..|.....|.+|-+.-|-.
T Consensus         1 pY-qC~~CG-~~F~~~s~l~~H~r~~hg~   27 (44)
T PHA00616          1 MY-QCLRCG-GIFRKKKEVIEHLLSVHKQ   27 (44)
T ss_pred             CC-ccchhh-HHHhhHHHHHHHHHHhcCC
Confidence            88 999999 9999999999999887743

>cd06314 PBP1_tmGBP Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs

Probab=92.64  E-value=0.54  Score=39.08  Aligned_cols=72  Identities=11%  Similarity=-0.004  Sum_probs=52.1

Q ss_pred             cCCchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          102 VGYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       102 vgygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      +..|+..++++.|+.+..+.+..  .|........+.+.+.++|.|++.+.+.+ +.++++.+.+ +..+|++|..
T Consensus        16 ~~~gi~~~~~~~g~~~~~~~~~~--~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~-~ipvV~~~~~   88 (271)
T cd06314          16 AEAGVKAAGKELGVDVEFVVPQQ--GTVNAQLRMLEDLIAEGVDGIAISPIDPKAVIPALNKAAA-GIKLITTDSD   88 (271)
T ss_pred             HHHHHHHHHHHcCCeEEEeCCCC--CCHHHHHHHHHHHHhcCCCEEEEecCChhHhHHHHHHHhc-CCCEEEecCC
Confidence            45788899999999998764221  12233334444455789999999987654 5688999988 9999999864

Periplasmic sugar-binding domain of Thermotoga maritima glucose-binding protein (tmGBP) and its close homologs from other bacteria. They are a member of the type I periplasmic binding protein superfamily which consists of two domains connected by a three-stranded hinge. TmGBP is specific for glucose and its binding pocket is buried at the interface of the two domains. TmGBP also exhibits high thermostability and the highest structural similarity to E. coli glucose binding protein (ecGBP).

>cd06322 PBP1_ABC_sugar_binding_like_12 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.57  E-value=0.64  Score=38.20  Aligned_cols=70  Identities=10%  Similarity=0.016  Sum_probs=49.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......   |......+.+.+.++++|.|++.+.+++ +.+.++.+++.|..+|.++..
T Consensus        19 ~~i~~~~~~~g~~~~i~~~~~---~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~   89 (267)
T cd06322          19 NAMKEEAKKQKVNLIVSIANQ---DLNKQLSDVEDFITKKVDAIVLSPVDSKGIRAAIAKAKKAGIPVITVDIA   89 (267)
T ss_pred             HHHHHHHHhcCCEEEEecCCC---CHHHHHHHHHHHHHcCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEEccc
Confidence            577888889999887443222   2233334444444689999999876654 678899999999999999754

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06321 PBP1_ABC_sugar_binding_like_11 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.50  E-value=0.68  Score=38.24  Aligned_cols=71  Identities=10%  Similarity=0.009  Sum_probs=50.5

Q ss_pred             Cchhhhhhh--hcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKR--VWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrR--AGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++.  .|+.+.++....+.   .-...+.+.|...+++.|++.+.+++ ..++++.+.++|...|+++...
T Consensus        19 ~gi~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~dgiIi~~~~~~~~~~~i~~~~~~~ipvv~~~~~~   92 (271)
T cd06321          19 KGAEAAAKKLNPGVKVTVVSADYDL---NKQVSQIDNFIAAKVDLILLNAVDSKGIAPAVKRAQAAGIVVVAVDVAA   92 (271)
T ss_pred             HHHHHHHHHhCCCeEEEEccCCCCH---HHHHHHHHHHHHhCCCEEEEeCCChhHhHHHHHHHHHCCCeEEEecCCC
Confidence            577888888  88888765443222   22233444444689999999886654 5788899999999999998753

This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>PRK15482 transcriptional regulator MurR; Provisional

Probab=92.42  E-value=0.51  Score=41.42  Aligned_cols=92  Identities=15%  Similarity=0.178  Sum_probs=63.7

Q ss_pred             hHHHHHHHhhhcCCcc----CCc--------hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcC--
Q 046085           87 METYKMASKATLTPKV----GYS--------LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSD--  152 (230)
Q Consensus        87 ~~KY~~AAr~vl~pkv----gyg--------La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSD--  152 (230)
                      .+.+++|+..+...+.    |.|        ++--|.+.|..|....|..      +...+...+ +. =|+++++|-  
T Consensus       122 ~~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~------~~~~~~~~~-~~-~Dv~i~iS~sg  193 (285)
T PRK15482        122 YARLQKIIEVISKAPFIQITGLGGSALVGRDLSFKLMKIGYRVACEADTH------VQATVSQAL-KK-GDVQIAISYSG  193 (285)
T ss_pred             HHHHHHHHHHHHhCCeeEEEEeChhHHHHHHHHHHHHhCCCeeEEeccHh------HHHHHHhcC-CC-CCEEEEEeCCC
Confidence            4567777776655543    333        3445668899988765432      222222233 23 389999995  


Q ss_pred             -CcchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          153 -DSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       153 -DSDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                       ..+...+++.|+++|+++|.|-+.....|.+.||
T Consensus       194 ~t~~~~~~~~~a~~~g~~iI~IT~~~~s~la~~ad  228 (285)
T PRK15482        194 SKKEIVLCAEAARKQGATVIAITSLADSPLRRLAH  228 (285)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCCCCchHHhCC
Confidence             4677788999999999999999987778999999

>cd06311 PBP1_ABC_sugar_binding_like_3 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.37  E-value=0.91  Score=37.69  Aligned_cols=70  Identities=13%  Similarity=0.079  Sum_probs=49.0

Q ss_pred             Cchhhhhhhh-----cEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRV-----WFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRA-----Gv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+-.++++.     |+.+......-.+   .-..++.+.|-..++|.|++++.|++ +...+..|+++|+.+|.++..
T Consensus        19 ~gi~~~a~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vDgiii~~~~~~~~~~~i~~~~~~gIpvV~~d~~   94 (274)
T cd06311          19 WHAQAAAKKLEAAYPDVEFILVTASNDT---EQQNAQQDLLINRKIDALVILPFESAPLTQPVAKAKKAGIFVVVVDRG   94 (274)
T ss_pred             HHHHHHHHHhhhhCCCeEEEEEcCCCCH---HHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCeEEEEcCC
Confidence            3566666665     6777765443222   33445555454689999999986644 678899999999999999764

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06317 PBP1_ABC_sugar_binding_like_8 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.37  E-value=0.75  Score=37.73  Aligned_cols=70  Identities=7%  Similarity=0.008  Sum_probs=49.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcch-HHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF-VEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF-~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+.|+.+.......+.   .......+.+...+++.|++.+.+++. .+.+..++++|..+|.++..
T Consensus        20 ~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~l~~~~~~~iPvV~~~~~   90 (275)
T cd06317          20 KAFQAAAEEDGVEVIVLDANGDV---ARQAAQVEDLIAQKVDGIILWPTDGQAYIPGLRKAKQAGIPVVITNSN   90 (275)
T ss_pred             HHHHHHHHhcCCEEEEEcCCcCH---HHHHHHHHHHHHcCCCEEEEecCCccccHHHHHHHHHCCCcEEEeCCC
Confidence            36677788889999876543222   222333343446799999999877664 68889999999999999864

Pperiplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06308 PBP1_sensor_kinase_like Periplasmic binding domain of two-component sensor kinase signaling systems

Probab=92.31  E-value=0.65  Score=38.46  Aligned_cols=70  Identities=6%  Similarity=-0.017  Sum_probs=49.0

Q ss_pred             Cchhhhhhhh-cEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRV-WFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRA-Gv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+. |+.|-+... ....+  -...+.+.+.+.++|.|++++.+++ +.+.+..+.+.|+..|+++..
T Consensus        19 ~~i~~~~~~~~g~~~~~~~~-~~~~~--~~~~~i~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~   90 (270)
T cd06308          19 DEIQREASNYPDVELIIADA-ADDNS--KQVADIENFIRQGVDLLIISPNEAAPLTPVVEEAYRAGIPVILLDRK   90 (270)
T ss_pred             HHHHHHHHhcCCcEEEEEcC-CCCHH--HHHHHHHHHHHhCCCEEEEecCchhhchHHHHHHHHCCCCEEEeCCC
Confidence            5778888885 888875533 22221  1122333344689999999987754 578889999999999999864

Periplasmic binding domain of two-component sensor kinase signaling systems, some of which are fused with a C-terminal histidine kinase A domain (HisK) and/or a signal receiver domain (REC). Members of this group share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily and are predicted to be involved in sensing of environmental stimuli; their substrate specificities, however, are not known in detail.

>PRK10014 DNA-binding transcriptional repressor MalI; Provisional

Probab=92.27  E-value=0.64  Score=40.13  Aligned_cols=70  Identities=9%  Similarity=-0.065  Sum_probs=50.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-.+......   .......+.|.+.++|.|++++.+.....++..+++.|+.+|.++..
T Consensus        84 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~  153 (342)
T PRK10014         84 AGLTEALEAQGRMVFLLQGGKDG---EQLAQRFSTLLNQGVDGVVIAGAAGSSDDLREMAEEKGIPVVFASRA  153 (342)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEeCCCCCcHHHHHHHhhcCCCEEEEecC
Confidence            36778888999888765443332   22234444455689999999987666678899999999999999764

>cd06310 PBP1_ABC_sugar_binding_like_2 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=92.20  E-value=0.48  Score=39.08  Aligned_cols=72  Identities=14%  Similarity=0.033  Sum_probs=51.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+.... ..|.+....+.+.+-..+++.+++++.+.+ ..++++.+++.|...|+++..
T Consensus        19 ~g~~~~~~~~g~~~~~~~~~~-~~~~~~~~~~i~~l~~~~vdgvii~~~~~~~~~~~l~~~~~~~ipvV~~~~~   91 (273)
T cd06310          19 AGAEAAAKELGVKVTFQGPAS-ETDVAGQVNLLENAIARGPDAILLAPTDAKALVPPLKEAKDAGIPVVLIDSG   91 (273)
T ss_pred             HHHHHHHHHcCCEEEEecCcc-CCCHHHHHHHHHHHHHhCCCEEEEcCCChhhhHHHHHHHHHCCCCEEEecCC
Confidence            578888999999999763210 113334445555455679999999875543 357889999999999999764

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06285 PBP1_LacI_like_7 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=92.13  E-value=0.76  Score=37.84  Aligned_cols=69  Identities=14%  Similarity=0.044  Sum_probs=52.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      +|+..+++..|+.+......   .|......+.+++...++|.+++.+.+++ ...++.+.+.|..+|++|..
T Consensus        19 ~gi~~~~~~~~~~~~~~~~~---~~~~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~iPvv~~~~~   87 (265)
T cd06285          19 EGIEEAAAERGYSTFVANTG---DNPDAQRRAIEMLLDRRVDGLILGDARSD-DHFLDELTRRGVPFVLVLRH   87 (265)
T ss_pred             HHHHHHHHHCCCEEEEEeCC---CCHHHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHHHcCCCEEEEccC
Confidence            58899999999998754332   23345556666666899999999875544 35689999999999999875

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06292 PBP1_LacI_like_10 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=92.05  E-value=0.75  Score=37.94  Aligned_cols=70  Identities=13%  Similarity=-0.025  Sum_probs=50.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc----chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS----DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS----DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+   ......+.+.+...++|++++.+...    .....+..+..+|..+|+||-.
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~i~~~~~~~ipvV~i~~~   92 (273)
T cd06292          19 EAIEAALAQYGYTVLLCNTYRG---GVSEADYVEDLLARGVRGVVFISSLHADTHADHSHYERLAERGLPVVLVNGR   92 (273)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCC---hHHHHHHHHHHHHcCCCEEEEeCCCCCcccchhHHHHHHHhCCCCEEEEcCC
Confidence            5888899999999875543322   23444555666678999999986332    2445678889999999999864

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06273 PBP1_GntR_like_1 This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators

Probab=92.04  E-value=0.81  Score=37.50  Aligned_cols=69  Identities=10%  Similarity=-0.059  Sum_probs=50.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-...+.-+.   .....+.+.+.+.++|++++++.++ -..+++.++++|+..|.+|..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~-~~~~~~~l~~~~iPvv~~~~~   87 (268)
T cd06273          19 QAFQETLAAHGYTLLVASSGYDL---DREYAQARKLLERGVDGLALIGLDH-SPALLDLLARRGVPYVATWNY   87 (268)
T ss_pred             HHHHHHHHHCCCEEEEecCCCCH---HHHHHHHHHHHhcCCCEEEEeCCCC-CHHHHHHHHhCCCCEEEEcCC
Confidence            58899999999998865443322   3333444445567899999987664 357788999999999999864

This group includes the ligand-binding domain of putative DNA transcription repressors which are highly similar to that of the repressor specific for gluconate (GntR), a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational

>TIGR02637 RhaS rhamnose ABC transporter, rhamnose-binding protein

Probab=92.02  E-value=0.48  Score=40.39  Aligned_cols=71  Identities=13%  Similarity=0.018  Sum_probs=48.1

Q ss_pred             CchhhhhhhhcEE-EEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFW-VRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~-VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|++ +........  |.+-...+.+.|-..++|.|++++-|++ +...++.|+++|+.+|+++..
T Consensus        18 ~gi~~~a~~~g~~~~i~~~~~~~--d~~~q~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~   90 (302)
T TIGR02637        18 KGAEEAAKELGSVYIIYTGPTGT--TAEGQIEVVNSLIAQKVDAIAISANDPDALVPALKKAMKRGIKVVTWDSG   90 (302)
T ss_pred             HHHHHHHHHhCCeeEEEECCCCC--CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCEEEEeCCC
Confidence            4778888999954 332211111  1233334455555689999999987654 567899999999999999854

This sugar-binding component of ABC transporter complexes is found in rhamnose catabolism operon contexts. Mutation of this gene in Rhizobium leguminosarum abolishes rhamnose transport and prevents growth on rhamnose as a carbon source.

>cd06301 PBP1_rhizopine_binding_like Periplasmic binding proteins specific to rhizopines

Probab=91.89  E-value=1  Score=37.08  Aligned_cols=70  Identities=9%  Similarity=-0.030  Sum_probs=51.2

Q ss_pred             Cchhhhhhh-hcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcch-HHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKR-VWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF-VEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrR-AGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF-~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++. .|+.+......-+.   +-..++.+.+.+.++|.|++.+.+++. ..+++.+.++|+.+|.++..
T Consensus        19 ~gi~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~l~~~~iPvv~~~~~   90 (272)
T cd06301          19 NAMKEHAKVLGGVELQFEDAKNDV---ATQLSQVENFIAQGVDAIIVVPVDTAATAPIVKAANAAGIPLVYVNRR   90 (272)
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHHHHHcCCCEEEEecCchhhhHHHHHHHHHCCCeEEEecCC
Confidence            578888888 89998865432222   333334444446899999999887764 57889999999999999875

Periplasmic binding proteins specific to rhizopines, which are simple sugar-like compounds produced in the nodules induced by the symbiotic root nodule bacteria, such as Rhizobium and Sinorhizobium. Rhizopine-binding-like proteins from other bacteria are also included. Two inositol based rhizopine compounds are known to date: L-3-O-methly-scyllo-inosamine (3-O-MSI) and scyllo-inosamine. Bacterial strains that can metabolize rhizopine have a greater competitive advantage in nodulation and rhizopine synthesis is regulated by NifA/NtrA regulatory transcription activators which are maximally expressed at the onset of nitrogen fixation in bacteroids. The members of this group belong to the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily.

>cd06315 PBP1_ABC_sugar_binding_like_6 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=91.86  E-value=0.8  Score=38.74  Aligned_cols=70  Identities=10%  Similarity=-0.049  Sum_probs=50.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-......+.+.   ...+.+.|..+++|+|+|++.+.+ ....+..+++.+...|+++..
T Consensus        20 ~gi~~~a~~~gy~~~~~~~~~~~~~---~~~~i~~l~~~~vdgiil~~~~~~~~~~~~~~~~~~~iPvV~~d~~   90 (280)
T cd06315          20 EGVREAAKAIGWNLRILDGRGSEAG---QAAALNQAIALKPDGIVLGGVDAAELQAELELAQKAGIPVVGWHAG   90 (280)
T ss_pred             HHHHHHHHHcCcEEEEECCCCCHHH---HHHHHHHHHHcCCCEEEEcCCCHHHHHHHHHHHHHCCCCEEEecCC
Confidence            5777889999999876544333322   223444455789999999987755 356778888899999999864

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06296 PBP1_CatR_like Ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation

Probab=91.83  E-value=0.74  Score=37.79  Aligned_cols=69  Identities=9%  Similarity=-0.036  Sum_probs=50.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+......-+.   .....+.+.|-..++|.|++++.+.+ ...++.+.++++.+|.|+-.
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~i~~~   87 (270)
T cd06296          19 RGVEEAAAAAGYDVVLSESGRRT---SPERQWVERLSARRTDGVILVTPELT-SAQRAALRRTGIPFVVVDPA   87 (270)
T ss_pred             HHHHHHHHHcCCeEEEecCCCch---HHHHHHHHHHHHcCCCEEEEecCCCC-hHHHHHHhcCCCCEEEEecc
Confidence            57888999999998866544333   22333334444688999999887654 36689999999999999864

This group includes the ligand-binding domain of a LacI-like transcriptional regulator, CatR which is involved in catechol degradation. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd06277 PBP1_LacI_like_1 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=91.77  E-value=0.78  Score=37.85  Aligned_cols=68  Identities=6%  Similarity=-0.023  Sum_probs=49.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.....-.+.   .....+.+.|...++|.|++.+.+++  .+++.++++|..+|+++..
T Consensus        22 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~--~~~~~l~~~~ipvV~~~~~   89 (268)
T cd06277          22 RAIEEEAKKYGYNLILKFVSDED---EEEFELPSFLEDGKVDGIILLGGIST--EYIKEIKELGIPFVLVDHY   89 (268)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCh---HHHHHHHHHHHHCCCCEEEEeCCCCh--HHHHHHhhcCCCEEEEccC
Confidence            36778888999988765443443   22334444454689999999987654  4589999999999999864

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd01575 PBP1_GntR Ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators

Probab=91.69  E-value=0.96  Score=36.83  Aligned_cols=69  Identities=7%  Similarity=-0.064  Sum_probs=48.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++...|+.|......-+.   +-...+.+.+...++|.+++++.+.+ ...+..+.+.|+..|++++.
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvv~~~~~   87 (268)
T cd01575          19 QGISDVLEAAGYQLLLGNTGYSP---EREEELLRTLLSRRPAGLILTGLEHT-ERTRQLLRAAGIPVVEIMDL   87 (268)
T ss_pred             HHHHHHHHHcCCEEEEecCCCCc---hhHHHHHHHHHHcCCCEEEEeCCCCC-HHHHHHHHhcCCCEEEEecC
Confidence            47788899999988765443222   22233444444689999999987655 56778888899999999874

This group represents the ligand-binding domain of DNA transcription repressor GntR specific for gluconate, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of GntR is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding,

>cd06309 PBP1_YtfQ_like Periplasmic binding domain of ABC-type YtfQ-like transport systems

Probab=91.60  E-value=0.91  Score=37.67  Aligned_cols=70  Identities=9%  Similarity=-0.008  Sum_probs=50.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|......-+.   .....+.+.|-..++|.|++.+.+++ +...++.+.+.|+..|+++..
T Consensus        19 ~~~~~~a~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~i~~~~~~~iPvV~~~~~   89 (273)
T cd06309          19 KSIKDAAEKRGFDLKFADAQQKQ---ENQISAIRSFIAQGVDVIILAPVVETGWDPVLKEAKAAGIPVILVDRG   89 (273)
T ss_pred             HHHHHHHHhcCCEEEEeCCCCCH---HHHHHHHHHHHHcCCCEEEEcCCccccchHHHHHHHHCCCCEEEEecC
Confidence            47788889999999865443332   23333333334578999999887765 578899999999999999864

Periplasmic binding domain of ABC-type YtfQ-like transport systems. The YtfQ protein from Escherichia coli is up-regulated under glucose-limited conditions and shares homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their ligand specificity is not determined experimentally.

>cd06319 PBP1_ABC_sugar_binding_like_10 Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems

Probab=91.40  E-value=0.99  Score=37.18  Aligned_cols=70  Identities=13%  Similarity=0.021  Sum_probs=49.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+..+...-+.   .-...+.+.+.+.++|.+++.+.+++ ...+++.+.+.|+.+|+++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~~~~~~~dgiii~~~~~~~~~~~l~~~~~~~ipvV~~~~~   89 (277)
T cd06319          19 RGVKSKAKALGYDAVELSAENSA---KKELENLRTAIDKGVSGIIISPTNSSAAVTLLKLAAQAKIPVVIADIG   89 (277)
T ss_pred             HHHHHHHHhcCCeEEEecCCCCH---HHHHHHHHHHHhcCCCEEEEcCCchhhhHHHHHHHHHCCCCEEEEecC
Confidence            57778888999998866543222   11122333233579999999888876 457899999999999999854

Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.

>cd06298 PBP1_CcpA_like Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation

Probab=91.36  E-value=1  Score=36.84  Aligned_cols=68  Identities=7%  Similarity=-0.017  Sum_probs=46.1

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..++++.|+.+..++...+.   .-...+.+.+...++|.+++++.+.+ .++++.+...|...|+++..
T Consensus        20 ~~~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiii~~~~~~-~~~~~~l~~~~ipvV~~~~~   87 (268)
T cd06298          20 GIDDIATMYKYNIILSNSDNDK---EKELKVLNNLLAKQVDGIIFMGGKIS-EEHREEFKRSPTPVVLAGSV   87 (268)
T ss_pred             HHHHHHHHcCCeEEEEeCCCCH---HHHHHHHHHHHHhcCCEEEEeCCCCc-HHHHHHHhcCCCCEEEEccc
Confidence            5667788889988866543222   22223333344689999999875433 46788888889999999864

Ligand-binding domain of the catabolite control protein A (CcpA), which functions as the major transcriptional regulator of carbon catabolite repression/regulation (CCR), a process in which enzymes necessary for the metabolism of alternative sugars are inhibited in the presence of glucose. In gram-positive bacteria, CCR is controlled by HPr, a phosphoenolpyruvate:sugar phsophotrasnferase system (PTS) and a transcriptional regulator CcpA. Moreover, CcpA can regulate sporulation and antibiotic resistance as well as play a role in virulence development of certain pathogens such as the group A streptococcus. The ligand binding domain of CcpA is a member of the LacI-GalR family of bacterial transcription regulators.

>TIGR02417 fruct_sucro_rep D-fructose-responsive transcription factor

Probab=91.22  E-value=1  Score=38.81  Aligned_cols=70  Identities=9%  Similarity=-0.041  Sum_probs=48.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++...|+.+-......+.   .-..++.+.|..+++|.|++.+.+.+..+.+..+...|+.+|+++..
T Consensus        80 ~~i~~~~~~~gy~~~i~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~~~~~  149 (327)
T TIGR02417        80 KELEQQCREAGYQLLIACSDDNP---DQEKVVIENLLARQVDALIVASCMPPEDAYYQKLQNEGLPVVALDRS  149 (327)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEeCCCCCChHHHHHHHhcCCCEEEEccc
Confidence            37888889999998755432222   22233444455689999999876653456778888899999999864

Members of this family belong the lacI helix-turn-helix family (pfam00356) of DNA-binding transcriptional regulators. All members are from the proteobacteria. Characterized members act as positive and negative transcriptional regulators of fructose and sucrose transport and metabolism. Sucrose is a disaccharide composed of fructose and glucose; D-fructose-1-phosphate rather than an intact sucrose moiety has been shown to act as the inducer.

>PF09237 GAGA: GAGA factor; InterPro: IPR015318 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=91.09  E-value=0.14  Score=37.48  Aligned_cols=34  Identities=18%  Similarity=0.215  Sum_probs=24.1

Q ss_pred             cCccCCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           23 KGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        23 ~g~i~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      +---+-..|- .|++|| +-++...+|.+|.+--|.
T Consensus        16 k~~~~S~~Pa-tCP~C~-a~~~~srnLrRHle~~H~   49 (54)
T PF09237_consen   16 KSKSQSEQPA-TCPICG-AVIRQSRNLRRHLEIRHF   49 (54)
T ss_dssp             CCCCTTS--E-E-TTT---EESSHHHHHHHHHHHTT
T ss_pred             HHhhccCCCC-CCCcch-hhccchhhHHHHHHHHhc
Confidence            3445567788 999999 999999999999988875

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. Members of this entry bind to a 5'-GAGAG-3' DNA consensus binding site, and contain a Cys2-His2 zinc finger core as well as an N-terminal extension containing two highly basic regions. The zinc finger core binds in the DNA major groove and recognises the first three GAG bases of the consensus in a manner similar to that seen in other classical zinc finger-DNA complexes. The second basic region forms a helix that interacts in the major groove recognising the last G of the consensus, while the first basic region wraps around the DNA in the minor groove and recognises the A in the fourth position of the consensus sequence []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1YUI_A 1YUJ_A.

>cd06278 PBP1_LacI_like_2 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=91.06  E-value=1.2  Score=36.23  Aligned_cols=68  Identities=10%  Similarity=0.092  Sum_probs=49.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+....+. +.  ...+..++ ..+++.|++++.+.+ ..+++.+.+.|+..|.++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~-~~--~~~i~~~~-~~~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   86 (266)
T cd06278          19 EALSRALQARGYQPLLINTDDDE-DL--DAALRQLL-QYRVDGVIVTSGTLS-SELAEECRRNGIPVVLINRY   86 (266)
T ss_pred             HHHHHHHHHCCCeEEEEcCCCCH-HH--HHHHHHHH-HcCCCEEEEecCCCC-HHHHHHHhhcCCCEEEECCc
Confidence            46788899999999876544333 32  23333334 689999999976644 25588899999999999865

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PF01380 SIS: SIS domain SIS domain web page

Probab=90.94  E-value=0.54  Score=35.24  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=37.4

Q ss_pred             CcceEEEEcC---CcchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          143 RFGCLVFVSD---DSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       143 ~vdclvLVSD---DSDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      .-++++++|-   ..+...+++.|+++|.++|+|-+..+..+.+.||
T Consensus        53 ~~d~vi~is~sg~~~~~~~~~~~ak~~g~~vi~iT~~~~~~l~~~ad   99 (131)
T PF01380_consen   53 PDDLVIIISYSGETRELIELLRFAKERGAPVILITSNSESPLARLAD   99 (131)
T ss_dssp             TTEEEEEEESSSTTHHHHHHHHHHHHTTSEEEEEESSTTSHHHHHSS
T ss_pred             ccceeEeeeccccchhhhhhhHHHHhcCCeEEEEeCCCCCchhhhCC
Confidence            4588888884   3466778899999999999999887789999999

; InterPro: IPR001347 The SIS (Sugar ISomerase) domain is a phosphosugar-binding domain [] found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars possibly by binding to the end-product of the pathway.; GO: 0005529 sugar binding, 0005975 carbohydrate metabolic process; PDB: 3TBF_C 2V4M_A 2ZJ4_A 2ZJ3_A 3FKJ_A 3ODP_A 3EUA_H 1VIV_A 1M3S_B 1TZB_A ....

>PRK12342 hypothetical protein; Provisional

Probab=90.93  E-value=1.2  Score=40.32  Aligned_cols=83  Identities=12%  Similarity=-0.045  Sum_probs=59.2

Q ss_pred             hhhhhhhcEEEEEccccchHHHHH-HHHHHHHHHhhcCcceEEEEcCC----cch---HHHHHHHHH-cCCeEEEecCCC
Q 046085          107 VVKLKRVWFWVRTMSDKLQAADVL-LRNYMVDMMDKRRFGCLVFVSDD----SDF---VEVLQEATL-RCLKTGVAGYMN  177 (230)
Q Consensus       107 a~eLrRAGv~VrtV~dKpqAAD~A-L~~~m~~~m~~r~vdclvLVSDD----SDF---~~lLr~ARe-r~l~TVVVGd~~  177 (230)
                      |..||+.|-.|..++..|..|+.+ |++++   | ..|+|-.+||||+    +|-   +.+|..|-+ .+..-|+.|..+
T Consensus        44 AlrLk~~g~~Vtvls~Gp~~a~~~~l~r~a---l-amGaD~avli~d~~~~g~D~~ata~~La~~i~~~~~DLVl~G~~s  119 (254)
T PRK12342         44 ASQLATDGDEIAALTVGGSLLQNSKVRKDV---L-SRGPHSLYLVQDAQLEHALPLDTAKALAAAIEKIGFDLLLFGEGS  119 (254)
T ss_pred             HHHHhhcCCEEEEEEeCCChHhHHHHHHHH---H-HcCCCEEEEEecCccCCCCHHHHHHHHHHHHHHhCCCEEEEcCCc
Confidence            556776788999999999876665 76666   5 4799999999988    566   566666555 478889999774


Q ss_pred             Cch-----hhhhhhccccccc
Q 046085          178 DGT-----LKRIADRLKWAYN  193 (230)
Q Consensus       178 ~~a-----L~r~AD~leW~~~  193 (230)
                      -+.     -...|-+|.|-+-
T Consensus       120 ~D~~tgqvg~~lA~~Lg~P~v  140 (254)
T PRK12342        120 GDLYAQQVGLLLGELLQLPVI  140 (254)
T ss_pred             ccCCCCCHHHHHHHHhCCCcE
Confidence            222     5556666655543

>PRK10355 xylF D-xylose transporter subunit XylF; Provisional

Probab=90.90  E-value=1.2  Score=39.81  Aligned_cols=69  Identities=19%  Similarity=0.115  Sum_probs=52.0

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+-.+++..|+.+..+....+.   ....++.+.|.++++|.|++++.+++ +.+.+..+.++|+.+|+++..
T Consensus        46 gi~~~a~~~g~~l~i~~~~~~~---~~~~~~i~~l~~~~vDGiIi~~~~~~~~~~~l~~~~~~~iPvV~id~~  115 (330)
T PRK10355         46 IFVKKAESLGAKVFVQSANGNE---ETQMSQIENMINRGVDVLVIIPYNGQVLSNVIKEAKQEGIKVLAYDRM  115 (330)
T ss_pred             HHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCeEEEECCC
Confidence            6677888899999876543333   33444444455789999999987654 678899999999999999864

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=90.77  E-value=0.13  Score=35.69  Aligned_cols=25  Identities=24%  Similarity=0.329  Sum_probs=14.2

Q ss_pred             cccccCCCcccCchHHHHHHHHHhHHH
Q 046085           34 LVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .||+|| . -.+...|..|+.+-|..+
T Consensus         4 ~CP~C~-~-~~~~~~L~~H~~~~H~~~   28 (54)
T PF05605_consen    4 TCPYCG-K-GFSESSLVEHCEDEHRSE   28 (54)
T ss_pred             CCCCCC-C-ccCHHHHHHHHHhHCcCC
Confidence            566666 3 344556666666666544

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>cd06297 PBP1_LacI_like_12 Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs

Probab=90.59  E-value=1.2  Score=37.18  Aligned_cols=69  Identities=10%  Similarity=-0.073  Sum_probs=48.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+-+.......   .....+...|...++|++++.+.+.+ ..++..+++.|+.+|++|..
T Consensus        19 ~~i~~~~~~~gy~~~~~~~~~~~---~~~~~~~~~l~~~~vdgvi~~~~~~~-~~~~~~l~~~~iPvv~~~~~   87 (269)
T cd06297          19 EGIEGALLEQRYDLALFPLLSLA---RLKRYLESTTLAYLTDGLLLASYDLT-ERLAERRLPTERPVVLVDAE   87 (269)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCcH---HHHHHHHHHHHhcCCCEEEEecCccC-hHHHHHHhhcCCCEEEEccC
Confidence            48888999999888865332211   12222323354678999999997766 46778889999999999864

Ligand-binding domain of uncharacterized transcription regulators from Thermus thermophilus and close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>cd06283 PBP1_RegR_EndR_KdgR_like Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR

Probab=90.33  E-value=1.5  Score=35.61  Aligned_cols=69  Identities=6%  Similarity=-0.060  Sum_probs=47.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .......+.|.+.++|.|++.+.+.+- ..++.+.+.|...|+++..
T Consensus        19 ~~i~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~~dgiii~~~~~~~-~~l~~~~~~~ipvV~~~~~   87 (267)
T cd06283          19 KGIEDVCRAHGYQVLVCNSDNDP---EKEKEYLESLLAYQVDGLIVNPTGNNK-ELYQRLAKNGKPVVLVDRK   87 (267)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCH---HHHHHHHHHHHHcCcCEEEEeCCCCCh-HHHHHHhcCCCCEEEEcCC
Confidence            36667777888888655443322   222333444446899999998866554 3578889999999999875

Ligand-binding domain of DNA transcription repressor RegR and other putative regulators such as KdgR and EndR, all of which are members of the LacI-GalR family of bacterial transcription regulators. RegR regulates bacterial competence and the expression of virulence factors, including hyaluronidase. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>smart00451 ZnF_U1 U1-like zinc finger

Probab=90.32  E-value=0.26  Score=30.41  Aligned_cols=33  Identities=9%  Similarity=0.190  Sum_probs=27.0

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKKR   64 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr~Kr   64 (230)
                      .|| .|.+|+ .-|.+...+..|++.-.-+++.++
T Consensus         2 ~~~-~C~~C~-~~~~~~~~~~~H~~gk~H~~~~~~   34 (35)
T smart00451        2 GGF-YCKLCN-VTFTDEISVEAHLKGKKHKKNVKK   34 (35)
T ss_pred             cCe-EccccC-CccCCHHHHHHHHChHHHHHHHHc
Confidence            368 999999 999999999999988766655543

Family of C2H2-type zinc fingers, present in matrin, U1 small nuclear ribonucleoprotein C and other RNA-binding proteins.

>cd06271 PBP1_AglR_RafR_like Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators

Probab=90.29  E-value=1.3  Score=36.06  Aligned_cols=69  Identities=7%  Similarity=-0.067  Sum_probs=47.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .....+..++...+++++++.+.+.+ ...+..+.+.+..+|+++..
T Consensus        23 ~~i~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~vdgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   91 (268)
T cd06271          23 SGLSEALAEHGYDLVLLPVDPDE---DPLEVYRRLVESGLVDGVIISRTRPD-DPRVALLLERGFPFVTHGRT   91 (268)
T ss_pred             HHHHHHHHHCCceEEEecCCCcH---HHHHHHHHHHHcCCCCEEEEecCCCC-ChHHHHHHhcCCCEEEECCc
Confidence            47788899999888755433221   22244455565567999999876543 34567888899999999764

Ligand-binding domain of DNA transcription repressors specific for raffinose (RafR) and alpha-glucosides (AglR) which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the represso

>PRK11557 putative DNA-binding transcriptional regulator; Provisional

Probab=90.21  E-value=1.2  Score=38.70  Aligned_cols=93  Identities=14%  Similarity=0.013  Sum_probs=63.1

Q ss_pred             hhHHHHHHHhhhcCCcc----CCc--------hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC
Q 046085           86 RMETYKMASKATLTPKV----GYS--------LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD  153 (230)
Q Consensus        86 k~~KY~~AAr~vl~pkv----gyg--------La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD  153 (230)
                      ..++.+.++..+...+-    |.|        ++-.|.+.|+.|...+|.      .....+...|  ..=|+++.+|-.
T Consensus       114 ~~~~l~~~~~~i~~a~~I~i~G~G~s~~~A~~~~~~l~~~g~~~~~~~d~------~~~~~~~~~~--~~~Dv~I~iS~s  185 (278)
T PRK11557        114 SEEKLHECVTMLRSARRIILTGIGASGLVAQNFAWKLMKIGINAVAERDM------HALLATVQAL--SPDDLLLAISYS  185 (278)
T ss_pred             CHHHHHHHHHHHhcCCeEEEEecChhHHHHHHHHHHHhhCCCeEEEcCCh------HHHHHHHHhC--CCCCEEEEEcCC
Confidence            34667777776665554    444        344578899998865442      1112222234  234777777743


Q ss_pred             ---cchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          154 ---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       154 ---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                         .+...+++.|+++|+++|+|-+.....+.+.||
T Consensus       186 g~~~~~~~~~~~ak~~ga~iI~IT~~~~s~la~~ad  221 (278)
T PRK11557        186 GERRELNLAADEALRVGAKVLAITGFTPNALQQRAS  221 (278)
T ss_pred             CCCHHHHHHHHHHHHcCCCEEEEcCCCCCchHHhCC
Confidence               455678999999999999999987789999999

>cd06274 PBP1_FruR Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs

Probab=89.86  E-value=1.4  Score=36.23  Aligned_cols=69  Identities=7%  Similarity=-0.098  Sum_probs=46.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|....-..+.   .-...+.+.+.+.++|.+++++.+.+-.. ++.+++.|..+|+++-.
T Consensus        19 ~~~~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvV~~~~~   87 (264)
T cd06274          19 KRLEALARERGYQLLIACSDDDP---ETERETVETLIARQVDALIVAGSLPPDDP-YYLCQKAGLPVVALDRP   87 (264)
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEcCCCCchHH-HHHHHhcCCCEEEecCc
Confidence            46677788899887644322221   22234444455789999999987654333 77889999999999775

Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type I periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor

>cd05008 SIS_GlmS_GlmD_1 SIS (Sugar ISomerase) domain repeat 1 found in Glucosamine 6-phosphate synthase (GlmS) and Glucosamine-6-phosphate deaminase (GlmD)

Probab=89.79  E-value=0.74  Score=34.82  Aligned_cols=72  Identities=19%  Similarity=0.122  Sum_probs=48.8

Q ss_pred             hhhhhhhhc-EEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchh
Q 046085          106 LVVKLKRVW-FWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTL  181 (230)
Q Consensus       106 La~eLrRAG-v~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL  181 (230)
                      ++..|.+.| +.+...+  |.  +...  .+ ..+  ..-|.++.+|-.   .+-..+++.|+++|.++|.|-+..+..|
T Consensus        17 ~~~~l~~~~~~~~~~~~--~~--~~~~--~~-~~~--~~~d~~I~iS~sG~t~e~~~~~~~a~~~g~~vi~iT~~~~s~l   87 (126)
T cd05008          17 AKYLLERLAGIPVEVEA--AS--EFRY--RR-PLL--DEDTLVIAISQSGETADTLAALRLAKEKGAKTVAITNVVGSTL   87 (126)
T ss_pred             HHHHHHHhcCCceEEEe--hh--Hhhh--cC-CCC--CCCcEEEEEeCCcCCHHHHHHHHHHHHcCCeEEEEECCCCChH
Confidence            555677776 7777554  22  1111  11 112  245778888754   4566778899999999999999866799


Q ss_pred             hhhhh
Q 046085          182 KRIAD  186 (230)
Q Consensus       182 ~r~AD  186 (230)
                      .+.||
T Consensus        88 a~~ad   92 (126)
T cd05008          88 AREAD   92 (126)
T ss_pred             HHhCC
Confidence            99999

The SIS domain is found in many phosphosugar isomerases and phosphosugar binding proteins. GlmS contains a N-terminal glutaminase domain and two C-terminal SIS domains and catalyzes the first step in hexosamine metabolism, converting fructose 6-phosphate into glucosamine 6-phosphate using glutamine as nitrogen source. The glutaminase domain hydrolyzes glutamine to glutamate and ammonia. Ammonia is transferred through a channel to the isomerase domain for glucosamine 6-phosphate synthesis. The end product of the pathway is N-acetylglucosamine, which plays multiple roles in eukaryotic cells including being a building block of bacterial and fungal cell walls. In the absence of glutamine, GlmS catalyzes the isomerization of fructose 6-phosphate into glucose 6- phosphate (PGI-like activity). Glucosamine-6-phosphate deaminase (GlmD) cont

>PRK09701 D-allose transporter subunit; Provisional

Probab=89.71  E-value=1.1  Score=38.95  Aligned_cols=72  Identities=10%  Similarity=0.017  Sum_probs=50.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|..+. .|...|..-.....+.+...++|.|++.+.+++ -...+..+.+.|+.+|+++..
T Consensus        44 ~gi~~~a~~~g~~v~~~~-~~~~~~~~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~~~~giPvV~~~~~  116 (311)
T PRK09701         44 KGIEDEAKTLGVSVDIFA-SPSEGDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK  116 (311)
T ss_pred             HHHHHHHHHcCCeEEEec-CCCCCCHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEeCCC
Confidence            678889999999998652 111122233344444455689999999886654 235577888999999999865

>PHA00732 hypothetical protein

Probab=89.56  E-value=0.19  Score=38.20  Aligned_cols=26  Identities=15%  Similarity=0.142  Sum_probs=22.9

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|..|| ..|.+...|.+|-+..|.
T Consensus         1 py-~C~~Cg-k~F~s~s~Lk~H~r~~H~   26 (79)
T PHA00732          1 MF-KCPICG-FTTVTLFALKQHARRNHT   26 (79)
T ss_pred             Cc-cCCCCC-CccCCHHHHHHHhhcccC
Confidence            78 999999 999999999999775554

>cd06293 PBP1_LacI_like_11 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=89.42  E-value=2  Score=35.42  Aligned_cols=69  Identities=9%  Similarity=-0.049  Sum_probs=48.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.|.......   |..-...+.+.|-..++|.|++++.+.+.. .++.+...+..+|+||..
T Consensus        19 ~gi~~~~~~~gy~v~~~~~~~---~~~~~~~~i~~~~~~~~dgiii~~~~~~~~-~~~~~~~~~~pvV~i~~~   87 (269)
T cd06293          19 DAVEEEADARGLSLVLCATRN---RPERELTYLRWLDTNHVDGLIFVTNRPDDG-ALAKLINSYGNIVLVDED   87 (269)
T ss_pred             HHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHHHHCCCCEEEEeCCCCCHH-HHHHHHhcCCCEEEECCC
Confidence            578889999999887553322   223444555556678999999998665544 345556779999999964

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd01536 PBP1_ABC_sugar_binding_like Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily

Probab=89.26  E-value=2.9  Score=33.68  Aligned_cols=69  Identities=9%  Similarity=0.048  Sum_probs=47.5

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchH-HHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFV-EVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~-~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..++...|+.+.++....+... + ...+.+++ ..+++.+++++.+++.. .++..+++.+...|.++..
T Consensus        20 ~~~~~a~~~g~~~~~~~~~~~~~~-~-~~~~~~l~-~~~vdgvi~~~~~~~~~~~~~~~l~~~~ip~V~~~~~   89 (267)
T cd01536          20 GAEAAAKELGVELIVLDAQNDVSK-Q-IQQIEDLI-AQGVDGIIISPVDSAALTPALKKANAAGIPVVTVDSD   89 (267)
T ss_pred             HHHHHHHhcCceEEEECCCCCHHH-H-HHHHHHHH-HcCCCEEEEeCCCchhHHHHHHHHHHCCCcEEEecCC
Confidence            455666667888887665433211 1 12333335 57999999998776654 5889999999999999875

Periplasmic sugar-binding domain of active transport systems that are members of the type I periplasmic binding protein (PBP1) superfamily. The members of this family function as the primary receptors for chemotaxis and transport of many sugar based solutes in bacteria and archaea. The sugar binding domain is also homologous to the ligand-binding domain of eukaryotic receptors such as glutamate receptor (GluR) and DNA-binding transcriptional repressors such as LacI and GalR. Moreover, this periplasmic binding domain, also known as Venus flytrap domain, undergoes transition from an open to a closed conformational state upon the binding of ligands such as lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. This family also includes the periplasmic binding domain of autoinducer-2 (AI-2

>PRK10936 TMAO reductase system periplasmic protein TorT; Provisional

Probab=89.25  E-value=1.1  Score=39.95  Aligned_cols=69  Identities=10%  Similarity=0.022  Sum_probs=48.5

Q ss_pred             CchhhhhhhhcEEEEEcccc--chHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDK--LQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dK--pqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+......  +++   .-...+.+.+-++++|.|+|++.+++ +...+ .+++.|+.+|.+++.
T Consensus        66 ~gi~~aa~~~G~~l~i~~~~~~~~~---~~q~~~i~~l~~~~vdgIIl~~~~~~~~~~~l-~~~~~giPvV~~~~~  137 (343)
T PRK10936         66 YGMVEEAKRLGVDLKVLEAGGYYNL---AKQQQQLEQCVAWGADAILLGAVTPDGLNPDL-ELQAANIPVIALVNG  137 (343)
T ss_pred             HHHHHHHHHhCCEEEEEcCCCCCCH---HHHHHHHHHHHHhCCCEEEEeCCChHHhHHHH-HHHHCCCCEEEecCC
Confidence            47888899999998865432  222   22334444455789999999987655 44667 889999999988654

>PRK11303 DNA-binding transcriptional regulator FruR; Provisional

Probab=88.75  E-value=2  Score=36.89  Aligned_cols=70  Identities=9%  Similarity=-0.085  Sum_probs=47.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-.....-..   .-...+.+.+...++|.|++.+.+..-...++.+.+.|..+|+||..
T Consensus        81 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~l~~~~iPvV~v~~~  150 (328)
T PRK11303         81 KYLERQARQRGYQLLIACSDDQP---DNEMRCAEHLLQRQVDALIVSTSLPPEHPFYQRLQNDGLPIIALDRA  150 (328)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEcCCCCCChHHHHHHHhcCCCEEEECCC
Confidence            37788889999888754322111   12223444455689999999876544456778888899999999864

>cd05005 SIS_PHI Hexulose-6-phosphate isomerase (PHI)

Probab=88.75  E-value=0.81  Score=37.46  Aligned_cols=68  Identities=18%  Similarity=0.187  Sum_probs=51.9

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|..|..+++- .+          ..+  ..=|+++.+|-.   .+...+++.|+++|+++|+|-+.....|.
T Consensus        51 ~~~~l~~~g~~~~~~~~~-~~----------~~~--~~~D~vI~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~la  117 (179)
T cd05005          51 FAMRLMHLGLNVYVVGET-TT----------PAI--GPGDLLIAISGSGETSSVVNAAEKAKKAGAKVVLITSNPDSPLA  117 (179)
T ss_pred             HHHHHHhCCCeEEEeCCC-CC----------CCC--CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchH
Confidence            344677889888877652 10          112  345888888854   67788999999999999999998677899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       118 ~~ad  121 (179)
T cd05005         118 KLAD  121 (179)
T ss_pred             HhCC
Confidence            9999

PHI is a member of the SIS (Sugar ISomerase domain) superfamily. In the ribulose monophosphate pathway of formaldehyde fixation, hexulose-6-phosphate synthase catalyzes the condensation of ribulose-5-phosphate with formadelhyde to become hexulose-6-phosphate, which is then isomerized to fructose-6-phosphate by PHI.

>PF05605 zf-Di19: Drought induced 19 protein (Di19), zinc-binding; InterPro: IPR008598 This entry consists of several drought induced 19 (Di19) like and RING finger 114 proteins

Probab=88.63  E-value=0.64  Score=32.18  Aligned_cols=39  Identities=18%  Similarity=0.236  Sum_probs=29.3

Q ss_pred             HHHHHHHHhcCccCCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           14 KELFNQLEIKGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        14 r~~l~~le~~g~i~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ..++..++..+.-.+. .+ +||+|. .++.  .+|..|+...|
T Consensus        15 ~~L~~H~~~~H~~~~~-~v-~CPiC~-~~~~--~~l~~Hl~~~H   53 (54)
T PF05605_consen   15 SSLVEHCEDEHRSESK-NV-VCPICS-SRVT--DNLIRHLNSQH   53 (54)
T ss_pred             HHHHHHHHhHCcCCCC-Cc-cCCCch-hhhh--hHHHHHHHHhc
Confidence            3566777777766544 56 999999 6655  49999999888

Di19 has been found to be strongly expressed in both the roots and leaves of Arabidopsis thaliana during progressive drought [], whilst RING finger proteins are thought to play a role in spermatogenesis. The precise function is unknown.

>TIGR00147 lipid kinase, YegS/Rv2252/BmrU family

Probab=88.52  E-value=2.1  Score=37.45  Aligned_cols=21  Identities=14%  Similarity=0.172  Sum_probs=10.5

Q ss_pred             CcceEEEEcCCcchHHHHHHH
Q 046085          143 RFGCLVFVSDDSDFVEVLQEA  163 (230)
Q Consensus       143 ~vdclvLVSDDSDF~~lLr~A  163 (230)
                      +.++|+.+..|=-+..+++.+
T Consensus        57 ~~d~ivv~GGDGTl~~v~~~l   77 (293)
T TIGR00147        57 GVDTVIAGGGDGTINEVVNAL   77 (293)
T ss_pred             CCCEEEEECCCChHHHHHHHH
Confidence            445555555555555554444

The E. coli member of this family, YegS has been purified and shown to have phosphatidylglycerol kinase activity. The member from M. tuberculosis, Rv2252, has diacylglycerol kinase activity. BmrU from B. subtilis is in an operon with multidrug efflux transporter Bmr, but is uncharacterized.

>PRK14987 gluconate operon transcriptional regulator; Provisional

Probab=88.45  E-value=2.4  Score=36.69  Aligned_cols=69  Identities=4%  Similarity=-0.088  Sum_probs=46.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++...|+.+-......+.   .....+.+.+...++|.|++++.+.+ .+.++.+.+.|..+|++++.
T Consensus        83 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~  151 (331)
T PRK14987         83 RGIESVTDAHGYQTMLAHYGYKP---EMEQERLESMLSWNIDGLILTERTHT-PRTLKMIEVAGIPVVELMDS  151 (331)
T ss_pred             HHHHHHHHHCCCEEEEecCCCCH---HHHHHHHHHHHhcCCCEEEEcCCCCC-HHHHHHHHhCCCCEEEEecC
Confidence            47888999999887654332221   11223344444689999999864432 46788888999999988764

>cd06291 PBP1_Qymf_like Ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs

Probab=88.43  E-value=1.8  Score=35.52  Aligned_cols=66  Identities=6%  Similarity=-0.026  Sum_probs=45.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+........+   .-...+.+.|-+.+++++++.+.|++.    +.+++.|..+|.++..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~~~~~~~dgiii~~~~~~~----~~~~~~gipvv~~~~~   84 (265)
T cd06291          19 RAVEKELYKKGYKLILCNSDNDP---EKEREYLEMLRQNQVDGIIAGTHNLGI----EEYENIDLPIVSFDRY   84 (265)
T ss_pred             HHHHHHHHHCCCeEEEecCCccH---HHHHHHHHHHHHcCCCEEEEecCCcCH----HHHhcCCCCEEEEeCC
Confidence            47788899999888754332222   122233344557899999999887663    4677889999999865

This group includes the ligand binding domain of the lacI-like transcription regulator from a novel metal-reducing bacterium Alkaliphilus Metalliredigens (strain Qymf) and its close homologs. Qymf is a strict anaerobe that could be grown in the presence of borax and its cells are straight rods that produce endospores. This group is a member of the LacI-GalR family repressors that are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription

>cd06267 PBP1_LacI_sugar_binding_like Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily

Probab=88.42  E-value=2.8  Score=33.47  Aligned_cols=70  Identities=9%  Similarity=0.010  Sum_probs=48.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+.......+.   +-...+.+.+-+.+++.+++...++.=.. ++.+.++|+..|.++...
T Consensus        19 ~g~~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~d~iii~~~~~~~~~-~~~~~~~~ipvv~~~~~~   88 (264)
T cd06267          19 RGIEEAAREAGYSVLLCNSDEDP---EKEREALELLLSRRVDGIILAPSRLDDEL-LEELAALGIPVVLVDRPL   88 (264)
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCH---HHHHHHHHHHHHcCcCEEEEecCCcchHH-HHHHHHcCCCEEEecccc
Confidence            46667777788888876655432   22222333333689999999888765544 888999999999998763

Ligand binding domain of the LacI tanscriptional regulator family belonging to the type I periplasmic-binding fold protein superfamily. In most cases, ligands are monosaccharide including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor. In this case, the domain sugar binding changes the DNA binding activity of the repressor domain.

>cd06300 PBP1_ABC_sugar_binding_like_1 Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily

Probab=88.19  E-value=3  Score=34.48  Aligned_cols=70  Identities=7%  Similarity=-0.053  Sum_probs=46.1

Q ss_pred             Cchhhhhhhh---cE--EEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRV---WF--WVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRA---Gv--~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.   |+  .+..+...-+.   .......+.|...++|.|++.+.++ .+.+++..+.++|+..|+++..
T Consensus        19 ~~i~~~~~~~~~~g~~~~l~i~~~~~~~---~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~l~~~~~~~iPvv~~~~~   94 (272)
T cd06300          19 DEFKAQAKELKKAGLISEFIVTSADGDV---AQQIADIRNLIAQGVDAIIINPASPTALNPVIEEACEAGIPVVSFDGT   94 (272)
T ss_pred             HHHHHHHHhhhccCCeeEEEEecCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEEecC
Confidence            3566677777   87  34444333222   2222333334467999999988664 4778899999999999998754

Periplasmic sugar-binding component of uncharacterized ABC-type transport systems that are members of the pentose/hexose sugar-binding protein family of the type I periplasmic binding protein superfamily, which consists of two alpha/beta globular domains connected by a three-stranded hinge. This Venus flytrap-like domain undergoes transition from an open to a closed conformational state upon ligand binding. Members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes; however their substrate specificity is not known in detail.

>cd06290 PBP1_LacI_like_9 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=87.84  E-value=2.3  Score=34.86  Aligned_cols=68  Identities=10%  Similarity=0.071  Sum_probs=47.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-..+...   |......+.+.|.+.++|.+++++.+.+- +.+...+ .+...|++|..
T Consensus        19 ~gi~~~~~~~gy~~~~~~~~~---~~~~~~~~i~~l~~~~~dgiii~~~~~~~-~~~~~~~-~~iPvV~i~~~   86 (265)
T cd06290          19 KGMERGLNGSGYSPIIATGHW---NQSRELEALELLKSRRVDALILLGGDLPE-EEILALA-EEIPVLAVGRR   86 (265)
T ss_pred             HHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHHHHCCCCEEEEeCCCCCh-HHHHHHh-cCCCEEEECCC
Confidence            578888999998887654432   33455666666778899999999865443 3344444 58999999864

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>cd01574 PBP1_LacI Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators

Probab=87.42  E-value=2.7  Score=34.41  Aligned_cols=71  Identities=8%  Similarity=-0.140  Sum_probs=48.4

Q ss_pred             CCchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          103 GYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       103 gygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      -.|+..++++.|+.+..+.....  |........+.|.+.++|.+++++.+.+=.. +..+.++|..+|++|..
T Consensus        18 ~~gi~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~l~~~~vdgiii~~~~~~~~~-~~~~~~~~ipvv~~~~~   88 (264)
T cd01574          18 LAAIESAAREAGYAVTLSMLAEA--DEEALRAAVRRLLAQRVDGVIVNAPLDDADA-ALAAAPADVPVVFVDGS   88 (264)
T ss_pred             HHHHHHHHHHCCCeEEEEeCCCC--chHHHHHHHHHHHhcCCCEEEEeCCCCChHH-HHHHHhcCCCEEEEecc
Confidence            46888899999999875543322  2234445555565788999998865433233 45567899999999875

Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type I periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type I periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA b

>TIGR00441 gmhA phosphoheptose isomerase

Probab=87.36  E-value=1.7  Score=35.33  Aligned_cols=86  Identities=15%  Similarity=0.211  Sum_probs=55.5

Q ss_pred             hhhhcEEEEEccccchHHHHHH------H---HHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCC
Q 046085          110 LKRVWFWVRTMSDKLQAADVLL------R---NYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       110 LrRAGv~VrtV~dKpqAAD~AL------~---~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      +.|.|..+..+++-|... .++      .   ..+...+- ..=|.++++|-.   .+-..+++.|+++|+++++|-+..
T Consensus        39 ~~~~g~~~~~~~~~~~~~-~~~~~d~~~~~~~~~~~~~~~-~~~D~~i~iS~sG~t~~~~~~~~~a~~~g~~ii~iT~~~  116 (154)
T TIGR00441        39 ENRPGLPAIALSADVSHL-TCVSNDYGYEDVFSRQVEALG-QKGDVLLGISTSGNSKNVLKAIEAAKDKGMKTITLAGKD  116 (154)
T ss_pred             cCCCCceEEecCCcHHHH-HHhhccCCHHHHHHHHHHHhC-CCCCEEEEEcCCCCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            467788887766333211 111      1   11222221 344888999854   556678899999999999999876


Q ss_pred             Cchhhhhhh---ccccccchHHH
Q 046085          178 DGTLKRIAD---RLKWAYNSEVE  197 (230)
Q Consensus       178 ~~aL~r~AD---~leW~~~~e~e  197 (230)
                      ...|.+.||   .++-...+-.|
T Consensus       117 ~s~l~~~ad~~l~~~~~~~~~~~  139 (154)
T TIGR00441       117 GGKMAGLADIELRVPHFYTPRIQ  139 (154)
T ss_pred             CCchhhhCCEEEEeCCCCcHHHH
Confidence            778999999   34555445444

Involved in lipopolysaccharide biosynthesis it may have a role in virulence in Haemophilus ducreyi.

>PF12874 zf-met: Zinc-finger of C2H2 type; PDB: 1ZU1_A 2KVG_A

Probab=87.35  E-value=0.26  Score=28.64  Aligned_cols=20  Identities=10%  Similarity=0.202  Sum_probs=18.8

Q ss_pred             cccccCCCcccCchHHHHHHH
Q 046085           34 LVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      .|.+|+ ..|.+...|..|++
T Consensus         2 ~C~~C~-~~f~s~~~~~~H~~   21 (25)
T PF12874_consen    2 YCDICN-KSFSSENSLRQHLR   21 (25)
T ss_dssp             EETTTT-EEESSHHHHHHHHT
T ss_pred             CCCCCC-CCcCCHHHHHHHHC
Confidence            699999 99999999999986

>cd06307 PBP1_uncharacterized_sugar_binding Periplasmic sugar-binding domain of uncharacterized transport systems

Probab=87.18  E-value=1.5  Score=36.40  Aligned_cols=72  Identities=7%  Similarity=-0.130  Sum_probs=47.6

Q ss_pred             CchhhhhhhhcEEEEEcc-ccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMS-DKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~-dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-.+. .-+...|.....+..+.|.. ++|.+++++.+++ +..+++.+.+.|+..|+++..
T Consensus        19 ~~i~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~i~~~~~-~vdgiii~~~~~~~~~~~i~~~~~~~ipvV~~~~~   92 (275)
T cd06307          19 AALEAAAAAFPDARIRVRIHFVESFDPAALAAALLRLGA-RSDGVALVAPDHPQVRAAVARLAAAGVPVVTLVSD   92 (275)
T ss_pred             HHHHHHHhhhhccCceEEEEEccCCCHHHHHHHHHHHHh-cCCEEEEeCCCcHHHHHHHHHHHHCCCcEEEEeCC
Confidence            467788888876544321 11111222334445555556 9999999987754 468899999999999999754

Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.

>cd06284 PBP1_LacI_like_6 Ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria

Probab=86.83  E-value=3.7  Score=33.43  Aligned_cols=69  Identities=9%  Similarity=-0.003  Sum_probs=47.1

Q ss_pred             CCchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          103 GYSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       103 gygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .+|+...++..|+.+.++...-   |.+....+.+.+...+++.|++.+.+.+-. +++ +.+.|...|++++.
T Consensus        18 ~~~i~~~~~~~g~~~~~~~~~~---~~~~~~~~~~~~~~~~vdgiii~~~~~~~~-~~~-~~~~~ipvv~~~~~   86 (267)
T cd06284          18 LKGIEDEAREAGYGVLLGDTRS---DPEREQEYLDLLRRKQADGIILLDGSLPPT-ALT-ALAKLPPIVQACEY   86 (267)
T ss_pred             HHHHHHHHHHcCCeEEEecCCC---ChHHHHHHHHHHHHcCCCEEEEecCCCCHH-HHH-HHhcCCCEEEEecc
Confidence            3688888999999987655432   223344455556578999999987665533 333 44679999999865

This group includes the ligand-binding domain of an uncharacterized transcription regulator from Actinobacillus succinogenes and its close homologs from other bacteria. This group belongs to the the LacI-GalR family repressors and are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding.

>cd05710 SIS_1 A subgroup of the SIS domain

Probab=86.62  E-value=1.5  Score=34.02  Aligned_cols=43  Identities=16%  Similarity=0.106  Sum_probs=36.8

Q ss_pred             cceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          144 FGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       144 vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      -|.++.+|-.   .+-..+++.|+++|++++.|-+..+..|.+.||
T Consensus        48 ~dl~I~iS~SG~t~~~~~~~~~a~~~g~~vi~iT~~~~s~la~~ad   93 (120)
T cd05710          48 KSVVILASHSGNTKETVAAAKFAKEKGATVIGLTDDEDSPLAKLAD   93 (120)
T ss_pred             CcEEEEEeCCCCChHHHHHHHHHHHcCCeEEEEECCCCCcHHHhCC
Confidence            3788888854   577788899999999999999886778999999

SIS (Sugar ISomerase) domains are found in many phosphosugar isomerases and phosphosugar binding proteins. SIS domains are also found in proteins that regulate the expression of genes involved in synthesis of phosphosugars.

>PRK15395 methyl-galactoside ABC transporter galactose-binding periplasmic protein MglB; Provisional

Probab=86.60  E-value=3.6  Score=36.48  Aligned_cols=70  Identities=10%  Similarity=-0.037  Sum_probs=46.1

Q ss_pred             Cchhhhhhhhc-EEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcch-HHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVW-FWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDF-VEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAG-v~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF-~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++...| +.+..+....+ +  .......+.|..+++|.|+|+.-++.+ ...++.+++.|..+|+|+..
T Consensus        44 ~gi~~~a~~~g~~~~~~~~~~~~-~--~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~l~~l~~~giPvV~vd~~  115 (330)
T PRK15395         44 KAIEKDAKAAPDVQLLMNDSQND-Q--SKQNDQIDVLLAKGVKALAINLVDPAAAPTVIEKARGQDVPVVFFNKE  115 (330)
T ss_pred             HHHHHHHHhcCCeEEEEecCCCC-H--HHHHHHHHHHHHcCCCEEEEeccCHHHHHHHHHHHHHCCCcEEEEcCC
Confidence            36677888885 56654332212 1  222233344546899999998755553 44789999999999999874

>TIGR02955 TMAO_TorT TMAO reductase system periplasmic protein TorT

Probab=86.30  E-value=2.1  Score=36.76  Aligned_cols=69  Identities=6%  Similarity=-0.005  Sum_probs=45.1

Q ss_pred             CchhhhhhhhcEEEEEcccc--chHHHHHHHHHHHHHHhhcCcceEEEEcCC-cchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDK--LQAADVLLRNYMVDMMDKRRFGCLVFVSDD-SDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dK--pqAAD~AL~~~m~~~m~~r~vdclvLVSDD-SDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|...+..  .+.   .-.....+.|-++++|.|++++.+ +.+...+..+ +.|...|++++.
T Consensus        19 ~gi~~~a~~~g~~v~~~~~~~~~~~---~~~~~~i~~l~~~~vDgiIi~~~~~~~~~~~l~~~-~~~iPvV~~~~~   90 (295)
T TIGR02955        19 YGMVEQAKHLGVELKVLEAGGYPNL---DKQLAQIEQCKSWGADAILLGTVSPEALNHDLAQL-TKSIPVFALVNQ   90 (295)
T ss_pred             HHHHHHHHHhCCEEEEEcCCCCCCH---HHHHHHHHHHHHcCCCEEEEecCChhhhhHHHHHH-hcCCCEEEEecC
Confidence            46778888999998865321  222   112234444447999999999754 4446777766 469998888543

Members of this family are the periplasmic protein TorT which, together with the the TorS/TorR histidine kinase/response regulator system, regulates expression of the torCAD operon for trimethylamine N-oxide reductase (TMAO reductase). It appears to bind an inducer for TMAO reductase, and shows homology to a periplasmic D-ribose binding protein.

>PRK11337 DNA-binding transcriptional repressor RpiR; Provisional

Probab=86.20  E-value=3.3  Score=36.29  Aligned_cols=91  Identities=15%  Similarity=0.177  Sum_probs=61.9

Q ss_pred             HHHHHHHhhhcCCcc----CCc--------hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcC---
Q 046085           88 ETYKMASKATLTPKV----GYS--------LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSD---  152 (230)
Q Consensus        88 ~KY~~AAr~vl~pkv----gyg--------La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSD---  152 (230)
                      +...+++..+...+.    |.|        ++..|.|.|+.+..+.|.-..      ......+  ..=|+++++|-   
T Consensus       128 ~~l~~~~~~i~~A~~I~i~G~G~S~~~A~~l~~~l~~~g~~~~~~~d~~~~------~~~~~~~--~~~Dl~I~iS~sG~  199 (292)
T PRK11337        128 DEFHRAARFFYQARQRDLYGAGGSAAIARDVQHKFLRIGVRCQAYDDAHIM------LMSAALL--QEGDVVLVVSHSGR  199 (292)
T ss_pred             HHHHHHHHHHHcCCeEEEEEecHHHHHHHHHHHHHhhCCCeEEEcCCHHHH------HHHHhcC--CCCCEEEEEeCCCC
Confidence            556666666655442    433        345577899998876543211      1111112  24577888875   


Q ss_pred             CcchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          153 DSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       153 DSDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      ..+...+++.|+++|+++|+|-+.....|.+.||
T Consensus       200 t~~~~~~~~~ak~~g~~ii~IT~~~~s~la~~ad  233 (292)
T PRK11337        200 TSDVIEAVELAKKNGAKIICITNSYHSPIAKLAD  233 (292)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCC
Confidence            3678889999999999999999987789999999

>TIGR03127 RuMP_HxlB 6-phospho 3-hexuloisomerase

Probab=86.14  E-value=1.5  Score=35.76  Aligned_cols=66  Identities=18%  Similarity=0.222  Sum_probs=50.2

Q ss_pred             hhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhh
Q 046085          108 VKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRI  184 (230)
Q Consensus       108 ~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~  184 (230)
                      ..|.+.|..+..+.+--           ...+  ..=|+++++|-.   .+-..+++.|+++|+++++|-+.....|.+.
T Consensus        50 ~~l~~~g~~~~~~~~~~-----------~~~~--~~~Dv~I~iS~sG~t~~~i~~~~~ak~~g~~ii~IT~~~~s~la~~  116 (179)
T TIGR03127        50 MRLMHLGFNVYVVGETT-----------TPSI--KKGDLLIAISGSGETESLVTVAKKAKEIGATVAAITTNPESTLGKL  116 (179)
T ss_pred             HHHHhCCCeEEEeCCcc-----------cCCC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCCchHHh
Confidence            34778899998876621           0122  234888888854   6677889999999999999988766789999


Q ss_pred             hh
Q 046085          185 AD  186 (230)
Q Consensus       185 AD  186 (230)
                      ||
T Consensus       117 ad  118 (179)
T TIGR03127       117 AD  118 (179)
T ss_pred             CC
Confidence            99

Members of this protein family are 6-phospho 3-hexuloisomerase (PHI), or the PHI domain of a fusion protein. This enzyme is part of the ribulose monophosphate (RuMP) pathway, which in one direction removes the toxic metabolite formaldehyde by assimilation into fructose-6-phosphate. In the other direction, in species lacking a complete pentose phosphate pathway, the RuMP pathway yields ribulose-5-phosphate, necessary for nucleotide biosynthesis, at the cost of also yielding formaldehyde. These latter species tend usually have a formaldehyde-activating enzyme to attach formaldehyde to the C1 carrier tetrahydromethanopterin.

>cd01537 PBP1_Repressors_Sugar_Binding_like Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems

Probab=85.93  E-value=4.9  Score=31.97  Aligned_cols=71  Identities=8%  Similarity=0.027  Sum_probs=48.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+...++..|+.+......... | .....+..++ +.+++.+|+.+.+.....++..+.+.++.+|.++...
T Consensus        19 ~g~~~~~~~~g~~l~~~~~~~~~-~-~~~~~~~~~~-~~~~d~ii~~~~~~~~~~~~~~l~~~~ip~v~~~~~~   89 (264)
T cd01537          19 KGIEEAAKAAGYQVLLANSQNDA-E-KQLSALENLI-ARGVDGIIIAPSDLTAPTIVKLARKAGIPVVLVDRDI   89 (264)
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCH-H-HHHHHHHHHH-HcCCCEEEEecCCCcchhHHHHhhhcCCCEEEeccCC
Confidence            35556666678777766554332 1 2233333445 5799999998877665557899999999999998764

Ligand-binding domain of the LacI-GalR family of transcription regulators and the sugar-binding domain of ABC-type transport systems, all of which contain the type I periplasmic binding protein-like fold. Their specific ligands include lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars. The LacI family of proteins consists of transcriptional regulators related to the lac repressor; in general the sugar binding domain in this family binds a sugar, which in turn changes the DNA binding activity of the repressor domain. The core structure of the periplasmic binding proteins is classified into two types and they differ in number and order of beta strands in each domain: type I, which has six beta strands, and type II, which has five beta strands. These two distinct structural arrangem

>PF02310 B12-binding: B12 binding domain; InterPro: IPR006158 The cobalamin (vitamin B12) binding domain can bind two different forms of the cobalamin cofactor, with cobalt bonded either to a methyl group (methylcobalamin) or to 5'-deoxyadenosine (adenosylcobalamin)

Probab=85.51  E-value=4  Score=30.62  Aligned_cols=67  Identities=15%  Similarity=0.087  Sum_probs=41.9

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEc-CCcchHHHHHHHH---HcCCe-EEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVS-DDSDFVEVLQEAT---LRCLK-TGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVS-DDSDF~~lLr~AR---er~l~-TVVVGd~  176 (230)
                      .-+|+.|+++|+.|..+..-...      ..+.+.+...+.+.+++-+ ..+.+..+.+.++   +.+-. .+|+|..
T Consensus        18 ~~la~~l~~~G~~v~~~d~~~~~------~~l~~~~~~~~pd~V~iS~~~~~~~~~~~~l~~~~k~~~p~~~iv~GG~   89 (121)
T PF02310_consen   18 LYLAAYLRKAGHEVDILDANVPP------EELVEALRAERPDVVGISVSMTPNLPEAKRLARAIKERNPNIPIVVGGP   89 (121)
T ss_dssp             HHHHHHHHHTTBEEEEEESSB-H------HHHHHHHHHTTCSEEEEEESSSTHHHHHHHHHHHHHTTCTTSEEEEEES
T ss_pred             HHHHHHHHHCCCeEEEECCCCCH------HHHHHHHhcCCCcEEEEEccCcCcHHHHHHHHHHHHhcCCCCEEEEECC
Confidence            44789999999999977332212      4455555566788877765 5666655555554   44333 5666665

Cobalamin-binding domains are mainly found in two families of enzymes present in animals and prokaryotes, which perform distinct kinds of reactions at the cobalt-carbon bond. Enzymes that require methylcobalamin carry out methyl transfer reactions. Enzymes that require adenosylcobalamin catalyse reactions in which the first step is the cleavage of adenosylcobalamin to form cob(II)alamin and the 5'-deoxyadenosyl radical, and thus act as radical generators. In both types of enzymes the B12-binding domain uses a histidine to bind the cobalt atom of cobalamin cofactors. This histidine is embedded in a DXHXXG sequence, the most conserved primary sequence motif of the domain [, , ]. Proteins containing the cobalamin-binding domain include: Animal and prokaryotic methionine synthase (2.1.1.13 from EC), which catalyse the transfer of a methyl group from methyl-cobalamin to homocysteine, yielding enzyme-bound cob(I)alamin and methionine. Animal and prokaryotic methylmalonyl-CoA mutase (5.4.99.2 from EC), which are involved in the degradation of several amino acids, odd-chain fatty acids and cholesterol via propionyl-CoA to the tricarboxylic acid cycle. Prokaryotic lysine 5,6-aminomutase (5.4.3.4 from EC). Prokaryotic glutamate mutase (5.4.99.1 from EC) []. Prokaryotic methyleneglutarate mutase (5.4.99.4 from EC). Prokaryotic isobutyryl-CoA mutase (5.4.99.13 from EC). The core structure of the cobalamin-binding domain is characterised by a five-stranded alpha/beta (Rossmann) fold, which consists of 5 parallel beta-sheets surrounded by 4-5 alpha helices in three layers (alpha/beta/alpha) []. Upon binding cobalamin, important elements of the binding site appear to become structured, including an alpha-helix that forms on one side of the cleft accommodating the nucleotide 'tail' of the cofactor. In cobalamin, the cobalt atom can be either free (dmb-off) or bound to dimethylbenzimidazole (dmb-on) according to the pH. When bound to the cobalamin-binding domain, the dimethylbenzimidazole ligand is replaced by the active histidine (His-on) of the DXHXXG motif. The replacement of dimethylbenzimidazole by histidine allows switching between the catalytic and activation cycles []. In methionine synthase the cobalamin cofactor is sandwiched between the cobalamin-binding domain and an approximately 90 residues N-terminal domain forming a helical bundle comprising two pairs of antiparallel helices []. In methionine synthase, there is a second, adjacent domain involved in cobalamin binding that forms a 4-helical bundle cap (IPR003759 from INTERPRO); in the conversion to the active conformation of this enzyme, the 4-helical cap rotates to allow the cobalamin cofactor to bind the activation domain (IPR004223 from INTERPRO) [].; GO: 0031419 cobalamin binding, 0046872 metal ion binding; PDB: 1Y80_A 3BUL_A 1K7Y_A 1BMT_A 3IV9_A 1K98_A 3IVA_A 3KP1_A 3KOW_A 3KOZ_A ....

>cd06361 PBP1_GPC6A_like Ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor

Probab=85.23  E-value=4.2  Score=37.66  Aligned_cols=71  Identities=6%  Similarity=0.077  Sum_probs=50.2

Q ss_pred             hhhhhhhhcEEEE---Eccccc--hHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          106 LVVKLKRVWFWVR---TMSDKL--QAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       106 La~eLrRAGv~Vr---tV~dKp--qAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      +..+|++.|+-|-   +++...  +.........+...+...+++.|++.+...+-..+++.|++.|++.+.||..
T Consensus       192 f~~~~~~~GicIa~~e~~~~~~~~~~~~~~~~~~~~~~ik~~~a~vVvv~~~~~~~~~l~~~a~~~g~~~~wigs~  267 (403)
T cd06361         192 FIIQAEANGVCIAFKEILPASLSDNTKLNRIIRTTEKIIEENKVNVIVVFARQFHVFLLFNKAIERNINKVWIASD  267 (403)
T ss_pred             HHHHHHHCCeEEEEEEEecCccCcchhHHHHHHHHHHHHhcCCCeEEEEEeChHHHHHHHHHHHHhCCCeEEEEEC
Confidence            5567888898774   343322  1111123333334344578999999999999999999999999998888865

This family includes the ligand-binding domain of the promiscuous L-alpha-amino acid receptor GPRC6A which is a broad-spectrum amino acid-sensing receptor, and its fish homolog, the 5.24 chemoreceptor. GPRC6A is a member of the family C of G-protein-coupled receptors that transduce extracellular signals into G-protein activation and ultimately into cellular responses.

>PF13465 zf-H2C2_2: Zinc-finger double domain; PDB: 2EN7_A 1TF6_A 1TF3_A 2ELT_A 2EOS_A 2EN2_A 2DMD_A 2WBS_A 2WBU_A 2EM5_A

Probab=85.11  E-value=0.39  Score=29.12  Aligned_cols=17  Identities=24%  Similarity=0.280  Sum_probs=13.6

Q ss_pred             CCCCCcccccccCCCcccC
Q 046085           27 RPAEPYVLVIVEGDLRLYN   45 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t   45 (230)
                      +.+.|| .|+.|| .+|.+
T Consensus        10 ~~~k~~-~C~~C~-k~F~~   26 (26)
T PF13465_consen   10 TGEKPY-KCPYCG-KSFSN   26 (26)
T ss_dssp             SSSSSE-EESSSS-EEESS
T ss_pred             CCCCCC-CCCCCc-CeeCc
Confidence            356789 999999 88764

...

>PRK07239 bifunctional uroporphyrinogen-III synthetase/response regulator domain protein; Validated

Probab=85.05  E-value=1.8  Score=39.68  Aligned_cols=83  Identities=17%  Similarity=0.082  Sum_probs=52.1

Q ss_pred             CccCCchhhhhhhhcEEEEEccc---cchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHH-----------H
Q 046085          100 PKVGYSLVVKLKRVWFWVRTMSD---KLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEAT-----------L  165 (230)
Q Consensus       100 pkvgygLa~eLrRAGv~VrtV~d---KpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~AR-----------e  165 (230)
                      |.-+..|+..|+..|..|-.+|-   .|-..+-++...+.+.. ...++|||+.|-+. ...++..++           -
T Consensus        19 ~~~a~~la~~L~~~G~~~~~~P~i~i~~~~~~~~~~~~~~~l~-~~~~d~vvfTS~ng-v~~~~~~l~~~~~~~~~~~~l   96 (381)
T PRK07239         19 ARRAEELAALLERRGARVVHAPALRIVPLADDDELRAATRALI-AAPPDIVVATTGIG-FRGWVEAADGWGLADELLEAL   96 (381)
T ss_pred             cCCHHHHHHHHHHcCCeEEEecCEEEecCCCcHHHHHHHHHHH-cCCCCEEEEeChHH-HHHHHHHHHHcCChHHHHHHH
Confidence            44457789999999999885422   22221223333232323 35799999999776 333333222           2


Q ss_pred             cCCeEEEecCCCCchhhhh
Q 046085          166 RCLKTGVAGYMNDGTLKRI  184 (230)
Q Consensus       166 r~l~TVVVGd~~~~aL~r~  184 (230)
                      .+++.+.||..|..+|..+
T Consensus        97 ~~~~i~aVG~~Ta~aL~~~  115 (381)
T PRK07239         97 SSARLLARGPKATGAIRAA  115 (381)
T ss_pred             cCCeEEEECccHHHHHHHc
Confidence            5788999999987887753

>cd06275 PBP1_PurR Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli

Probab=84.95  E-value=4.7  Score=33.07  Aligned_cols=70  Identities=10%  Similarity=0.022  Sum_probs=43.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+...-+   .+....+.+.+..+++|.+++.+-+.+-..+.......|..+|+||..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~l~~~~~ipvV~i~~~   88 (269)
T cd06275          19 RGVEQYCYRQGYNLILCNTEGD---PERQRSYLRMLAQKRVDGLLVMCSEYDQPLLAMLERYRHIPMVVMDWG   88 (269)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCC---hHHHHHHHHHHHHcCCCEEEEecCCCChHHHHHHHhcCCCCEEEEecc
Confidence            4667778888888875432222   233334444455689999999886655332222233468999999865

Ligand-binding domain of purine repressor, PurR, which functions as the master regulatory protein of de novo purine nucleotide biosynthesis in Escherichia coli. This dimeric PurR belongs to the LacI-GalR family of transcription regulators and is activated to bind to DNA operator sites by initially binding either of high affinity corepressors, hypoxanthine or guanine. PurR is composed of two functional domains: aan N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the purine transcription repressor undergoes a

>TIGR01481 ccpA catabolite control protein A

Probab=84.87  E-value=4.7  Score=34.65  Aligned_cols=69  Identities=6%  Similarity=0.023  Sum_probs=45.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .......+.+...++|.|++++.+.+ ..++..+.+.|+.+|++|..
T Consensus        79 ~~i~~~~~~~g~~~~i~~~~~~~---~~~~~~~~~l~~~~vdGiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~  147 (329)
T TIGR01481        79 RGIEDIATMYKYNIILSNSDEDP---EKEVQVLNTLLSKQVDGIIFMGGTIT-EKLREEFSRSPVPVVLAGTV  147 (329)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhcCCCEEEEecC
Confidence            46777788889888754332222   22233344444689999999875433 34567777889999999854

Catabolite control protein A is a LacI family global transcriptional regulator found in Gram-positive bacteria. CcpA is involved in repressing carbohydrate utilization genes [ex: alpha-amylase (amyE), acetyl-coenzyme A synthase (acsA)] and in activating genes involved in transporting excess carbon from the cell [ex: acetate kinase (ackA), alpha-acetolactate synthase (alsS)]. Additionally, disruption of CcpA in Bacillus megaterium, Staphylococcus xylosus, Lactobacillus casei and Lactocacillus pentosus also decreases growth rate, which suggests CcpA is involved in the regulation of other metabolic pathways.

>cd05006 SIS_GmhA Phosphoheptose isomerase is a member of the SIS (Sugar ISomerase) superfamily

Probab=84.74  E-value=1.8  Score=35.39  Aligned_cols=43  Identities=26%  Similarity=0.264  Sum_probs=36.0

Q ss_pred             cceEEEEcC---CcchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          144 FGCLVFVSD---DSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       144 vdclvLVSD---DSDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      =|+++++|-   ..+-..+++.|+++|++||.|-+.....|.+.||
T Consensus       102 ~Dv~I~iS~SG~t~~~i~~~~~ak~~Ga~vI~IT~~~~s~La~~aD  147 (177)
T cd05006         102 GDVLIGISTSGNSPNVLKALEAAKERGMKTIALTGRDGGKLLELAD  147 (177)
T ss_pred             CCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCCchhhhCC
Confidence            477788874   3467788999999999999998876678999999

Phosphoheptose isomerase catalyzes the isomerization of sedoheptulose 7-phosphate into D-glycero-D-mannoheptose 7-phosphate. This is the first step of the biosynthesis of gram-negative bacteria inner core lipopolysaccharide precursor, L-glycero-D-mannoheptose (Gmh).

>PHA02768 hypothetical protein; Provisional

Probab=84.62  E-value=0.6  Score=34.00  Aligned_cols=25  Identities=16%  Similarity=0.384  Sum_probs=21.6

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .| .|+.|| .+|.....|..|-+. |.
T Consensus         5 ~y-~C~~CG-K~Fs~~~~L~~H~r~-H~   29 (55)
T PHA02768          5 GY-ECPICG-EIYIKRKSMITHLRK-HN   29 (55)
T ss_pred             cc-CcchhC-CeeccHHHHHHHHHh-cC
Confidence            47 899999 999999999988776 44

>PF12171 zf-C2H2_jaz: Zinc-finger double-stranded RNA-binding; InterPro: IPR022755 This zinc finger is found in archaea and eukaryotes, and is approximately 30 amino acids in length

Probab=84.56  E-value=0.31  Score=29.33  Aligned_cols=21  Identities=14%  Similarity=0.146  Sum_probs=19.1

Q ss_pred             cccccCCCcccCchHHHHHHHH
Q 046085           34 LVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      .|.+|+ +.|.+...|..|.+.
T Consensus         3 ~C~~C~-k~f~~~~~~~~H~~s   23 (27)
T PF12171_consen    3 YCDACD-KYFSSENQLKQHMKS   23 (27)
T ss_dssp             BBTTTT-BBBSSHHHHHCCTTS
T ss_pred             CcccCC-CCcCCHHHHHHHHcc
Confidence            699999 999999999999764

The mammalian members of this group occur multiple times along the protein, joined by flexible linkers, and are referred to as JAZ - dsRNA-binding ZF protein - zinc-fingers. The JAZ proteins are expressed in all tissues tested and localise in the nucleus, particularly the nucleolus []. JAZ preferentially binds to double-stranded (ds) RNA or RNA/DNA hybrids rather than DNA. In addition to binding double-stranded RNA, these zinc-fingers are required for nucleolar localisation. This entry represents the multiple-adjacent-C2H2 zinc finger, JAZ. ; PDB: 4DGW_A 1ZR9_A.

>PF00702 Hydrolase: haloacid dehalogenase-like hydrolase; InterPro: IPR005834 This group of hydrolase enzymes is structurally different from the alpha/beta hydrolase family (abhydrolase)

Probab=84.22  E-value=2.4  Score=33.78  Aligned_cols=75  Identities=12%  Similarity=0.116  Sum_probs=43.1

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC------cchHHHHHHHHHcCCeEEEecCC-C
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD------SDFVEVLQEATLRCLKTGVAGYM-N  177 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD------SDF~~lLr~ARer~l~TVVVGd~-~  177 (230)
                      .+-.+|+.+|+.+..++.-....       +...+...|++..+..+..      .-|..+++.....+-.++.|||+ |
T Consensus       134 ~~l~~L~~~Gi~~~i~TGD~~~~-------a~~~~~~lgi~~~~v~a~~~~kP~~k~~~~~i~~l~~~~~~v~~vGDg~n  206 (215)
T PF00702_consen  134 EALQELKEAGIKVAILTGDNEST-------ASAIAKQLGIFDSIVFARVIGKPEPKIFLRIIKELQVKPGEVAMVGDGVN  206 (215)
T ss_dssp             HHHHHHHHTTEEEEEEESSEHHH-------HHHHHHHTTSCSEEEEESHETTTHHHHHHHHHHHHTCTGGGEEEEESSGG
T ss_pred             hhhhhhhccCcceeeeecccccc-------ccccccccccccccccccccccccchhHHHHHHHHhcCCCEEEEEccCHH
Confidence            34467888898888777443321       1112233577443333333      14677777777444589999999 5


Q ss_pred             Cchhhhhhh
Q 046085          178 DGTLKRIAD  186 (230)
Q Consensus       178 ~~aL~r~AD  186 (230)
                      |-.-.+.||
T Consensus       207 D~~al~~Ag  215 (215)
T PF00702_consen  207 DAPALKAAG  215 (215)
T ss_dssp             HHHHHHHSS
T ss_pred             HHHHHHhCc
Confidence            544444443

This group includes L-2-haloacid dehalogenase, epoxide hydrolases and phosphatases. The structure consists of two domains. One is an inserted four helix bundle, which is the least well conserved region of the alignment, between residues 16 and 96 of HAD1_PSESP. The rest of the fold is composed of the core alpha/beta domain.; GO: 0003824 catalytic activity, 0008152 metabolic process; PDB: 1TE2_A 3NAL_A 3NAM_A 3NAN_A 3A1D_B 3J09_A 3J08_A 2B8E_C 3A1E_A 2VOY_J ....

>TIGR03590 PseG pseudaminic acid biosynthesis-associated protein PseG

Probab=84.18  E-value=4.1  Score=35.98  Aligned_cols=73  Identities=18%  Similarity=0.159  Sum_probs=42.6

Q ss_pred             hhhhhhhcEEEEEccccch-HHHHHHHHHHHHHHhhcCcceEEEEcCCcchH-HHHHHHHHcCCeEEEecCCCCchhhhh
Q 046085          107 VVKLKRVWFWVRTMSDKLQ-AADVLLRNYMVDMMDKRRFGCLVFVSDDSDFV-EVLQEATLRCLKTGVAGYMNDGTLKRI  184 (230)
Q Consensus       107 a~eLrRAGv~VrtV~dKpq-AAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~-~lLr~ARer~l~TVVVGd~~~~aL~r~  184 (230)
                      ...|+.+|+.|.++++... +.|.+   .+.+.+.+.+.+.+  |.|.-.|. ...+..++.+.++++|-|..++..  .
T Consensus        46 ~~~i~~~g~~v~~~~~~~~~~~d~~---~~~~~l~~~~~d~v--V~D~y~~~~~~~~~~k~~~~~l~~iDD~~~~~~--~  118 (279)
T TIGR03590        46 IDLLLSAGFPVYELPDESSRYDDAL---ELINLLEEEKFDIL--IVDHYGLDADWEKLIKEFGRKILVIDDLADRPH--D  118 (279)
T ss_pred             HHHHHHcCCeEEEecCCCchhhhHH---HHHHHHHhcCCCEE--EEcCCCCCHHHHHHHHHhCCeEEEEecCCCCCc--C
Confidence            4456666666666655432 11222   24445544456644  55655544 344556678999999999865544  7


Q ss_pred             hh
Q 046085          185 AD  186 (230)
Q Consensus       185 AD  186 (230)
                      ||
T Consensus       119 ~D  120 (279)
T TIGR03590       119 CD  120 (279)
T ss_pred             CC
Confidence            88

This protein is found in association with enzymes involved in the biosynthesis of pseudaminic acid, a component of polysaccharide in certain Pseudomonas strains as well as a modification of flagellin in Campylobacter and Hellicobacter. The role of this protein is unclear, although it may participate in N-acetylation in conjunction with, or in the absence of PseH (TIGR03585) as it often scores above the trusted cutoff to pfam00583 representing a family of acetyltransferases.

>cd06347 PBP1_ABC_ligand_binding_like_12 Type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions

Probab=83.91  E-value=2.2  Score=36.22  Aligned_cols=67  Identities=7%  Similarity=0.017  Sum_probs=47.3

Q ss_pred             hhhhhhhhcEEEEEc-cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecC
Q 046085          106 LVVKLKRVWFWVRTM-SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGY  175 (230)
Q Consensus       106 La~eLrRAGv~VrtV-~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd  175 (230)
                      +...|+.+|+.|-.. .-.+...|  ....+.+++ ..+.+.+++.+...+...+++.|++.|++..++|.
T Consensus       156 ~~~~~~~~g~~v~~~~~~~~~~~d--~~~~~~~~~-~~~~d~i~~~~~~~~~~~~~~~~~~~g~~~~i~~~  223 (334)
T cd06347         156 FKEAFKKLGGEIVAEETFNAGDTD--FSAQLTKIK-AKNPDVIFLPGYYTEVGLIAKQARELGIKVPILGG  223 (334)
T ss_pred             HHHHHHHcCCEEEEEEEecCCCCc--HHHHHHHHH-hcCCCEEEEcCchhhHHHHHHHHHHcCCCCcEEec
Confidence            344566678766433 22333444  444555556 47899999999999999999999999998888864

This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine/isoleucine/valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.

>cd06279 PBP1_LacI_like_3 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=83.88  E-value=4.7  Score=33.97  Aligned_cols=65  Identities=8%  Similarity=-0.071  Sum_probs=47.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|..++...   +..    +.+.+...++|.+++.+.+.. ...++.++..|+..|.+|..
T Consensus        24 ~gi~~~a~~~g~~~~~~~~~~---~~~----~~~~~~~~~~dgiii~~~~~~-~~~~~~~~~~~ipvV~~~~~   88 (283)
T cd06279          24 AGVAEVLDAAGVNLLLLPASS---EDS----DSALVVSALVDGFIVYGVPRD-DPLVAALLRRGLPVVVVDQP   88 (283)
T ss_pred             HHHHHHHHHCCCEEEEecCcc---HHH----HHHHHHhcCCCEEEEeCCCCC-hHHHHHHHHcCCCEEEEecC
Confidence            477889999999998665433   212    222334689999999886533 36789999999999999765

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK13937 phosphoheptose isomerase; Provisional

Probab=83.84  E-value=2.1  Score=35.96  Aligned_cols=44  Identities=20%  Similarity=0.204  Sum_probs=37.2

Q ss_pred             CcceEEEEc---CCcchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          143 RFGCLVFVS---DDSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       143 ~vdclvLVS---DDSDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      .=|.++++|   ...+-..+++.|+++|++||+|-+..+..|.+.||
T Consensus       106 ~~Dl~i~iS~sG~t~~~~~~~~~ak~~g~~~I~iT~~~~s~L~~~ad  152 (188)
T PRK13937        106 PGDVLIGISTSGNSPNVLAALEKARELGMKTIGLTGRDGGKMKELCD  152 (188)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEeCCCCChhHHhCC
Confidence            348888888   45677889999999999999997766678999999

>PRK00414 gmhA phosphoheptose isomerase; Reviewed

Probab=83.76  E-value=6  Score=33.61  Aligned_cols=75  Identities=17%  Similarity=0.192  Sum_probs=50.6

Q ss_pred             hhhcEEEEEccccchHH----HHHHHHH---HHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCch
Q 046085          111 KRVWFWVRTMSDKLQAA----DVLLRNY---MVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGT  180 (230)
Q Consensus       111 rRAGv~VrtV~dKpqAA----D~AL~~~---m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~a  180 (230)
                      -|-|+.+...+|..--.    |......   +...+ ...=|+++.+|..   .+-..+++.|+++|++||.|-...+..
T Consensus        73 ~r~g~~~~~~~d~~~~~~~~~d~~~~~~~~~~~~~~-~~~~Dv~I~iS~SG~t~~~i~~~~~ak~~g~~iI~iT~~~~s~  151 (192)
T PRK00414         73 NRPGYPAIAISDVSHLSCVSNDFGYDYVFSRYVEAV-GREGDVLLGISTSGNSGNIIKAIEAARAKGMKVITLTGKDGGK  151 (192)
T ss_pred             CCCCceEEecCcHHHHhhhhccCCHHHHHHHHHHHh-CCCCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEeCCCCCh
Confidence            37788887665431111    1111112   22233 2445888888854   677788999999999999998877789


Q ss_pred             hhhhhh
Q 046085          181 LKRIAD  186 (230)
Q Consensus       181 L~r~AD  186 (230)
                      |.+.||
T Consensus       152 l~~~ad  157 (192)
T PRK00414        152 MAGLAD  157 (192)
T ss_pred             hHHhCC
Confidence            999999

>COG1609 PurR Transcriptional regulators [Transcription]

Probab=83.39  E-value=4.5  Score=36.66  Aligned_cols=69  Identities=7%  Similarity=0.024  Sum_probs=48.9

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      |+..++...|+.+-...-..   |....+++.+.|..+++|.|++.+ -..=......+.+.++.+|+||...
T Consensus        79 gi~~~~~~~gy~~~l~~~~~---~~~~e~~~~~~l~~~~vdGiIi~~-~~~~~~~~~~l~~~~~P~V~i~~~~  147 (333)
T COG1609          79 GIEEAAREAGYSLLLANTDD---DPEKEREYLETLLQKRVDGLILLG-ERPNDSLLELLAAAGIPVVVIDRSP  147 (333)
T ss_pred             HHHHHHHHcCCEEEEECCCC---CHHHHHHHHHHHHHcCCCEEEEec-CCCCHHHHHHHHhcCCCEEEEeCCC
Confidence            78899999999998554443   234445555666689999999998 2222234455566699999999863

>cd06360 PBP1_alkylbenzenes_like Type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene

Probab=83.21  E-value=3.6  Score=35.23  Aligned_cols=69  Identities=9%  Similarity=0.037  Sum_probs=49.2

Q ss_pred             chhhhhhhhcEEEEEc-cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCC--eEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTM-SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCL--KTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV-~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l--~TVVVGd~  176 (230)
                      ++...|+.+|+.|... .-.+.+.|.+  ..+..+. +.+.|.|++++..++...+++.+++.|+  +..++|..
T Consensus       153 ~~~~~~~~~G~~v~~~~~~~~~~~d~~--~~v~~~~-~~~pd~v~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  224 (336)
T cd06360         153 GFKEAFTEAGGKIVKELWVPFGTSDFA--SYLAQIP-DDVPDAVFVFFAGGDAIKFVKQYDAAGLKAKIPLIGSG  224 (336)
T ss_pred             HHHHHHHHcCCEEEEEEecCCCCcchH--HHHHHHH-hcCCCEEEEecccccHHHHHHHHHHcCCccCCeEEecc
Confidence            3456677888887532 2234456644  3444445 4789999999999999999999999999  66677643

This group includes the type I periplasmic binding component of active transport systems that are predicted be involved in anaerobic biodegradation of alkylbenzenes such as toluene and ethylbenzene; their substrate specificity is not well characterized, however.

>cd06280 PBP1_LacI_like_4 Ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors

Probab=83.02  E-value=6.3  Score=32.53  Aligned_cols=67  Identities=9%  Similarity=0.066  Sum_probs=44.7

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..+++..|+.+.......+.   .....+.+.+-..++|.|++++.+.+.. .. .+...|..+|.|+..
T Consensus        20 ~i~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~~dgiii~~~~~~~~-~~-~~~~~~iPvV~~~~~   86 (263)
T cd06280          20 AVEDAAYRAGLRVILCNTDEDP---EKEAMYLELMEEERVTGVIFAPTRATLR-RL-AELRLSFPVVLIDRA   86 (263)
T ss_pred             HHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEeCCCCCch-HH-HHHhcCCCEEEECCC
Confidence            6778888899888765443333   2233344444467899999998765543 33 456679999999865

This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.

>PRK09552 mtnX 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase; Reviewed

Probab=82.94  E-value=15  Score=30.75  Aligned_cols=95  Identities=17%  Similarity=0.019  Sum_probs=55.1

Q ss_pred             HHHHHHHhhhcCCccC-CchhhhhhhhcEEEEEccccchH-HHHHHHHHHHHHHhhcCcceEE-EEcCC--------c--
Q 046085           88 ETYKMASKATLTPKVG-YSLVVKLKRVWFWVRTMSDKLQA-ADVLLRNYMVDMMDKRRFGCLV-FVSDD--------S--  154 (230)
Q Consensus        88 ~KY~~AAr~vl~pkvg-ygLa~eLrRAGv~VrtV~dKpqA-AD~AL~~~m~~~m~~r~vdclv-LVSDD--------S--  154 (230)
                      +.+.++..+.+.|.-| -.+-..|++.|+.+-.||+++.. +...|...    +..-.+-|.- .++++        +  
T Consensus        63 ~~~~~~~~~~~~l~pG~~e~l~~l~~~g~~~~IvS~~~~~~i~~il~~~----~~~~~i~~n~~~~~~~~~~~~kp~p~~  138 (219)
T PRK09552         63 EEIIQFLLETAEIREGFHEFVQFVKENNIPFYVVSGGMDFFVYPLLQGL----IPKEQIYCNGSDFSGEYITITWPHPCD  138 (219)
T ss_pred             HHHHHHHHhCCCcCcCHHHHHHHHHHcCCeEEEECCCcHHHHHHHHHHh----CCcCcEEEeEEEecCCeeEEeccCCcc
Confidence            4444444444555555 46778899999999999999974 22222221    1110111101 12221        1  


Q ss_pred             ---------chHHHHHHHHHcCCeEEEecCC-CCchhhhhhh
Q 046085          155 ---------DFVEVLQEATLRCLKTGVAGYM-NDGTLKRIAD  186 (230)
Q Consensus       155 ---------DF~~lLr~ARer~l~TVVVGd~-~~~aL~r~AD  186 (230)
                               ....+++......-.++.|||+ +|-...+.||
T Consensus       139 ~~~~~~~~~~K~~~l~~~~~~~~~~i~iGDs~~Di~aa~~Ag  180 (219)
T PRK09552        139 EHCQNHCGCCKPSLIRKLSDTNDFHIVIGDSITDLEAAKQAD  180 (219)
T ss_pred             ccccccCCCchHHHHHHhccCCCCEEEEeCCHHHHHHHHHCC
Confidence                     1356666655555689999999 6666777888

>cd06342 PBP1_ABC_LIVBP_like Type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine)

Probab=82.93  E-value=3.2  Score=35.42  Aligned_cols=67  Identities=13%  Similarity=-0.029  Sum_probs=47.1

Q ss_pred             hhhhhhhcEEEEEcc-ccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          107 VVKLKRVWFWVRTMS-DKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       107 a~eLrRAGv~VrtV~-dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      ...|++.|+.|-... -.|.+.|+.  ..+..+. +.+.+.|++.+...++..+++.|++.|+...++|..
T Consensus       156 ~~~~~~~g~~v~~~~~~~~~~~d~~--~~l~~i~-~~~~~~vi~~~~~~~~~~~~~~~~~~g~~~~~~~~~  223 (334)
T cd06342         156 KKALKAAGGKVVAREGTTDGATDFS--AILTKIK-AANPDAVFFGGYYPEAGPLVRQMRQLGLKAPFMGGD  223 (334)
T ss_pred             HHHHHHcCCEEEEEecCCCCCccHH--HHHHHHH-hcCCCEEEEcCcchhHHHHHHHHHHcCCCCcEEecC
Confidence            355666787665332 223455542  2233333 578999999999999999999999999998888764

This subgroup includes the type I periplasmic ligand-binding domain of ABC (Atpase Binding Cassette)-type active transport systems that are involved in the transport of all three branched chain aliphatic amino acids (leucine, isoleucine and valine). This subgroup also includes a leucine-specific binding protein (or LivK), which is very similar in sequence and structure to leucine-isoleucine-valine binding protein (LIVBP). ABC-type active transport systems are transmembrane proteins that function in the transport of diverse sets of substrates across extra- and intracellular membranes, including carbohydrates, amino acids, inorganic ions, dipeptides and oligopeptides, metabolic products, lipids and sterols, and heme, to name a few.

>PRK13936 phosphoheptose isomerase; Provisional

Probab=82.74  E-value=8.4  Score=32.71  Aligned_cols=44  Identities=16%  Similarity=0.222  Sum_probs=37.2

Q ss_pred             CcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhh---hh
Q 046085          143 RFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRI---AD  186 (230)
Q Consensus       143 ~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~---AD  186 (230)
                      .=|+++++|-.   .+-..+++.|+++|+++|.|.+.....|.+.   ||
T Consensus       111 ~~Dv~i~iS~sG~t~~~~~~~~~ak~~g~~iI~IT~~~~s~l~~l~~~ad  160 (197)
T PRK13936        111 PGDVLLAISTSGNSANVIQAIQAAHEREMHVVALTGRDGGKMASLLLPED  160 (197)
T ss_pred             CCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChhhhhhccCC
Confidence            44999999954   6678899999999999999998766788885   88

>cd01391 Periplasmic_Binding_Protein_Type_1 Type 1 periplasmic binding fold superfamily

Probab=82.54  E-value=11  Score=29.36  Aligned_cols=71  Identities=7%  Similarity=-0.003  Sum_probs=47.8

Q ss_pred             Cchhhhhhh--hcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKR--VWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrR--AGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+...+..  .|+.+.++.......+  ....+..++ ..+++.+++.+.+..-..++..+.+.|+.+|.++...
T Consensus        20 ~~~~~~~~~~g~~~~~~~~~~~~~~~~--~~~~~~~~~-~~~~d~ii~~~~~~~~~~~~~~~~~~~ip~v~~~~~~   92 (269)
T cd01391          20 AGIELAAEEIGRGLEVILADSQSDPER--ALEALRDLI-QQGVDGIIGPPSSSSALAVVELAAAAGIPVVSLDATA   92 (269)
T ss_pred             HHHHHHHHHhCCceEEEEecCCCCHHH--HHHHHHHHH-HcCCCEEEecCCCHHHHHHHHHHHHcCCcEEEecCCC
Confidence            345555666  6777776655443322  222222334 4689999999888776668999999999999998763

Type 1 periplasmic binding fold superfamily. This model and hierarchy represent the ligand binding domains of the LacI family of transcriptional regulators, periplasmic binding proteins of the ABC-type transport systems, the family C G-protein couples receptors (GPCRs), membrane bound guanylyl cyclases including the family of natriuretic peptide receptors (NPRs), and the N-terminal leucine/isoleucine/valine- binding protein (LIVBP)-like domains of the ionotropic glutamate receptors (iGluRs). In LacI-like transcriptional regulator and the bacterial periplasmic binding proteins the ligands are monosaccharides including lactose, ribose, fructose, xylose, arabinose, galactose/glucose, and other sugars, with a few exceptions. Periplasmic sugar binding proteins are one of the components of ABC transporters and are involved in the active transport of water-soluble ligands. The LacI family of proteins con

>PRK10423 transcriptional repressor RbsR; Provisional

Probab=82.38  E-value=6.3  Score=33.74  Aligned_cols=69  Identities=6%  Similarity=-0.022  Sum_probs=42.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGY  175 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd  175 (230)
                      .|+..++.+.|+.+.......+.   .-..++.+.|...++|.|++.+.+.+....--..+..++.+|+||.
T Consensus        76 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdGiI~~~~~~~~~~~~~l~~~~~iPvV~i~~  144 (327)
T PRK10423         76 RGVERSCFERGYSLVLCNTEGDE---QRMNRNLETLMQKRVDGLLLLCTETHQPSREIMQRYPSVPTVMMDW  144 (327)
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEeCCCcchhhHHHHHhcCCCCEEEECC
Confidence            47788899999887754332222   2222344445568999999998665443221111235889999975

>PRK10703 DNA-binding transcriptional repressor PurR; Provisional

Probab=81.95  E-value=7.1  Score=33.81  Aligned_cols=69  Identities=9%  Similarity=0.024  Sum_probs=48.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHH-cCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATL-RCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARe-r~l~TVVVGd~  176 (230)
                      .|+..++...|+.+......-   |..-...+.+.+-+.++|.|++++.+. ....++.+.+ .|+.+|+|+..
T Consensus        79 ~gi~~~~~~~g~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiii~~~~~-~~~~~~~l~~~~~iPvV~~d~~  148 (341)
T PRK10703         79 EAVEKNCYQKGYTLILCNAWN---NLEKQRAYLSMLAQKRVDGLLVMCSEY-PEPLLAMLEEYRHIPMVVMDWG  148 (341)
T ss_pred             HHHHHHHHHCCCEEEEEeCCC---CHHHHHHHHHHHHHcCCCEEEEecCCC-CHHHHHHHHhcCCCCEEEEecc
Confidence            578888999999887664332   222333444555578999999887543 3467788888 89999999754

>cd06272 PBP1_hexuronate_repressor_like Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators

Probab=81.57  E-value=6.7  Score=32.20  Aligned_cols=65  Identities=8%  Similarity=0.024  Sum_probs=44.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+.|+.+.......+.       ...+.|...++|++++++.+.+ ...++.+++.|..+|++|..
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~-------~~~~~l~~~~vdgii~~~~~~~-~~~~~~~~~~~ipvV~~~~~   83 (261)
T cd06272          19 TGINQAISKNGYNMNVSITPSLA-------EAEDLFKENRFDGVIIFGESAS-DVEYLYKIKLAIPVVSYGVD   83 (261)
T ss_pred             HHHHHHHHHcCCEEEEEecccHH-------HHHHHHHHcCcCEEEEeCCCCC-hHHHHHHHHcCCCEEEEccc
Confidence            47778888899887754322111       1223344679999999976543 33568888999999999875

Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are a member of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type I periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor

>PF12756 zf-C2H2_2: C2H2 type zinc-finger (2 copies); PDB: 2DMI_A

Probab=81.34  E-value=1  Score=32.32  Aligned_cols=25  Identities=12%  Similarity=0.218  Sum_probs=21.7

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHh
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ++ .|.+|| ..|.+...|..|++.-|
T Consensus        50 ~~-~C~~C~-~~f~s~~~l~~Hm~~~~   74 (100)
T PF12756_consen   50 SF-RCPYCN-KTFRSREALQEHMRSKH   74 (100)
T ss_dssp             SE-EBSSSS--EESSHHHHHHHHHHTT
T ss_pred             CC-CCCccC-CCCcCHHHHHHHHcCcc
Confidence            67 999999 99999999999998753

>cd01464 vWA_subfamily VWA subfamily: Von Willebrand factor type A (vWA) domain was originally found in the blood coagulation protein von Willebrand factor (vWF)

Probab=80.69  E-value=4.1  Score=32.93  Aligned_cols=42  Identities=21%  Similarity=0.232  Sum_probs=26.4

Q ss_pred             ceEEEEcCCc---chHH---HHHHHHHcCC--eEEEecCC-CCchhhhhhh
Q 046085          145 GCLVFVSDDS---DFVE---VLQEATLRCL--KTGVAGYM-NDGTLKRIAD  186 (230)
Q Consensus       145 dclvLVSDDS---DF~~---lLr~ARer~l--~TVVVGd~-~~~aL~r~AD  186 (230)
                      ..++|+||=.   +...   .++.+++.++  .++.||.. +...|+..|+
T Consensus       109 ~~iillTDG~~~~~~~~~~~~~~~~~~~~~~i~~igiG~~~~~~~L~~ia~  159 (176)
T cd01464         109 PWVFLLTDGEPTDDLTAAIERIKEARDSKGRIVACAVGPKADLDTLKQITE  159 (176)
T ss_pred             cEEEEEcCCCCCchHHHHHHHHHhhcccCCcEEEEEeccccCHHHHHHHHC
Confidence            4799999833   3443   3455554434  45666643 6667889888

Typically, the vWA domain is made up of approximately 200 amino acid residues folded into a classic a/b para-rossmann type of fold. The vWA domain, since its discovery, has drawn great interest because of its widespread occurrence and its involvement in a wide variety of important cellular functions. These include basal membrane formation, cell migration, cell differentiation, adhesion, haemostasis, signaling, chromosomal stability, malignant transformation and in immune defenses In integrins these domains form heterodimers while in vWF it forms multimers. There are different interaction surfaces of this domain as seen by the various molecules it complexes with. Ligand binding in most cases is mediated by the presence of a metal ion dependent adhesion site termed as the MIDAS motif that is a characteristic feature of most, if

>TIGR02137 HSK-PSP phosphoserine phosphatase/homoserine phosphotransferase bifunctional protein

Probab=80.50  E-value=9  Score=32.76  Aligned_cols=74  Identities=22%  Similarity=0.173  Sum_probs=46.4

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcc-eEE--EEcCC------------cchHHHHHHHHHcCCe
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFG-CLV--FVSDD------------SDFVEVLQEATLRCLK  169 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vd-clv--LVSDD------------SDF~~lLr~ARer~l~  169 (230)
                      .+-..|++.| .+-.||.+++.    +...+   +...|++ .++  |..++            .+=..+++...+.|..
T Consensus        75 ell~~lk~~~-~~~IVS~~~~~----~~~~i---l~~lgi~~~~an~l~~~~~g~~tG~~~~~~~~K~~~l~~l~~~~~~  146 (203)
T TIGR02137        75 EFVDWLRERF-QVVILSDTFYE----FSQPL---MRQLGFPTLLCHKLEIDDSDRVVGYQLRQKDPKRQSVIAFKSLYYR  146 (203)
T ss_pred             HHHHHHHhCC-eEEEEeCChHH----HHHHH---HHHcCCchhhceeeEEecCCeeECeeecCcchHHHHHHHHHhhCCC
Confidence            4666777776 77789999884    11222   2222443 121  33333            2233457777788889


Q ss_pred             EEEecCC-CCchhhhhhh
Q 046085          170 TGVAGYM-NDGTLKRIAD  186 (230)
Q Consensus       170 TVVVGd~-~~~aL~r~AD  186 (230)
                      ++.|||+ ||-.+-+.||
T Consensus       147 ~v~vGDs~nDl~ml~~Ag  164 (203)
T TIGR02137       147 VIAAGDSYNDTTMLSEAH  164 (203)
T ss_pred             EEEEeCCHHHHHHHHhCC
Confidence            9999999 8777777777

This enzyme is a member of the haloacid dehalogenase (HAD) superfamily, specifically part of subfamily IB by virtue of the presence of an alpha helical domain in between motifs I and II of the HAD domain . The closest homologs to this family are monofunctional phosphoserine phosphatases (TIGR00338).

>cd06304 PBP1_BmpA_like Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria

Probab=80.27  E-value=9  Score=32.04  Aligned_cols=68  Identities=10%  Similarity=-0.094  Sum_probs=43.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHc-CCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLR-CLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer-~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+...... ..   .-..++.+.|..+++|.|++++.+.+ ..++..+.+. +...|+++..
T Consensus        21 ~gi~~~~~~~gy~~~~~~~~-~~---~~~~~~~~~l~~~~vdgiii~~~~~~-~~~~~~~~~~~~ipvv~~~~~   89 (260)
T cd06304          21 EGLEKAEKELGVEVKYVESV-ED---ADYEPNLRQLAAQGYDLIFGVGFGFM-DAVEKVAKEYPDVKFAIIDGV   89 (260)
T ss_pred             HHHHHHHHhcCceEEEEecC-CH---HHHHHHHHHHHHcCCCEEEECCcchh-HHHHHHHHHCCCCEEEEecCc
Confidence            36777888899998854322 22   22335555565789999999875533 2233444443 7888998865

Periplasmic binding component of a family of basic membrane lipoproteins from Borrelia and various putative lipoproteins from other bacteria. These outer membrane proteins include Med, a cell-surface localized protein regulating the competence transcription factor gene comK in Bacillus subtilis, and PnrA, a periplasmic purine nucleoside binding protein of an ATP-binding cassette (ABC) transport system in Treponema pallidum. All contain the type I periplasmic sugar-binding protein-like fold.

>PHA00733 hypothetical protein

Probab=80.08  E-value=1.3  Score=36.05  Aligned_cols=24  Identities=17%  Similarity=0.321  Sum_probs=13.6

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|..|| ..|.+...|..|-.
T Consensus        71 ~kPy-~C~~Cg-k~Fss~s~L~~H~r   94 (128)
T PHA00733         71 VSPY-VCPLCL-MPFSSSVSLKQHIR   94 (128)
T ss_pred             CCCc-cCCCCC-CcCCCHHHHHHHHh
Confidence            4455 566666 55555555555544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	230
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 39.5 bits (91), Expect = 7e-04
 Identities = 44/298 (14%), Positives = 84/298 (28%), Gaps = 102/298 (34%)

Query: 8   SKEKKIKELFNQLEIKGVIRPAEPYVLVIVEGD---------LRLYNNDKLVNHFK-QIH 57
           S+ +   +L   L     +RP    V  +++G          L +  + K+      +I 
Sbjct: 132 SRLQPYLKLRQALLE---LRP-AKNV--LIDGVLGSGKTWVALDVCLSYKVQCKMDFKIF 185

Query: 58  ------KREQKKRLNQIES------AKGKMREHLVGNYSMRMETYKMASKATLTPKVGY- 104
                     +  L  ++            R     N  +R+ + +   +  L  K  Y 
Sbjct: 186 WLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKP-YE 244

Query: 105 -SLVVKLKRVW-------FWVR-----TMSDKLQAADVLLRNYMVDM-MDKRRFGCLVFV 150
             L+V L  V        F +      T   K Q  D L       + +D          
Sbjct: 245 NCLLV-LLNVQNAKAWNAFNLSCKILLTTRFK-QVTDFLSAATTTHISLDHHSMT---LT 299

Query: 151 SDDSDFVEVLQEATLRCLKTGVAGYMNDGTLKR------------IADRLK-----WAYN 193
            D+     +L    L+ L            L R            IA+ ++     W   
Sbjct: 300 PDEV--KSLL----LKYLD------CRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNW 347

Query: 194 SEVEKKRLIGMIDA--DCIQKED------------KDA----------WWELESSDAE 227
             V   +L  +I++  + ++  +              A          W+++  SD  
Sbjct: 348 KHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIKSDVM 405

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	230
2qip_A	165	Protein of unknown function VPA0982; APC85975, vib	99.25
1paa_A	30	Yeast transcription factor ADR1; transcription reg	97.01
2elr_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.87
2epx_A	47	Zinc finger protein 28 homolog; C2H2, zinc finger	96.75
1rim_A	33	E6APC2 peptide; E6-binding domain, zinc finger, hu	96.73
1znf_A	27	31ST zinc finger from XFIN; zinc finger DNA bindin	96.71
2els_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.67
2m0f_A	29	Zinc finger and BTB domain-containing protein 17;	96.63
2elq_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.63
2m0e_A	29	Zinc finger and BTB domain-containing protein 17;	96.63
1njq_A	39	Superman protein; zinc-finger, peptide-zinc comple	96.61
3iuf_A	48	Zinc finger protein UBI-D4; structural genomics co	96.6
1ard_A	29	Yeast transcription factor ADR1; transcription reg	96.6
2en3_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.59
2lvt_A	29	Zinc finger and BTB domain-containing protein 17;	95.6
2elt_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.56
1rik_A	29	E6APC1 peptide; E6-binding domain, zinc finger, hu	96.56
1srk_A	35	Zinc finger protein ZFPM1; classical zinc finger,	96.55
1p7a_A	37	BF3, BKLF, kruppel-like factor 3; classical zinc f	96.49
2eps_A	54	POZ-, at HOOK-, and zinc finger-containing protein	96.49
2elv_A	36	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.47
2lvr_A	30	Zinc finger and BTB domain-containing protein 17;	95.46
2elx_A	35	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.45
2elp_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.44
2m0d_A	30	Zinc finger and BTB domain-containing protein 17;	96.42
2kvh_A	27	Zinc finger and BTB domain-containing protein 32;	96.42
2enf_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.41
2emz_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.4
2eoz_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.38
2yte_A	42	Zinc finger protein 473; ZF-C2H2, structural genom	96.37
2en2_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	96.37
2lvu_A	26	Zinc finger and BTB domain-containing protein 17;	95.37
2ytt_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	96.36
2eov_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.35
2eoo_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.34
2en9_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.33
2eor_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.29
1klr_A	30	Zinc finger Y-chromosomal protein; transcription;	96.29
2eom_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.27
2en7_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.26
2eou_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	96.23
2yti_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.23
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	96.22
2emj_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.22
2eoh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.22
2ytm_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.22
2elm_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.21
2emh_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.21
2kvg_A	27	Zinc finger and BTB domain-containing protein 32;	96.2
2eoq_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.2
2ytn_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.2
2emg_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.19
2ytr_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.19
2epc_A	42	Zinc finger protein 32; zinc finger domain, C2H2,	96.19
2kvf_A	28	Zinc finger and BTB domain-containing protein 32;	96.18
2yth_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.18
2emi_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.18
2em6_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.17
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	96.14
2em4_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.14
2eq4_A	46	Zinc finger protein 224; C2H2, zinc finger domain,	96.13
2ep1_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.13
2epv_A	44	Zinc finger protein 268; C2H2, zinc finger domain,	96.13
2ytk_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.13
2elo_A	37	Zinc finger protein 406; ZFAT zinc finger 1, struc	96.12
1yui_A	54	GAGA-factor; complex (DNA-binding protein/DNA), ch	96.12
2epz_A	46	Zinc finger protein 28 homolog; C2H2, zinc finger	96.12
2yrm_A	43	B-cell lymphoma 6 protein; ZF-C2H2, zinc binding,	96.12
2yu8_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.11
2epu_A	45	Zinc finger protein 32; C2H2, zinc finger domain,	96.11
2enh_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.09
2elz_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	96.09
2eq1_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	96.07
2yto_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.06
2emm_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.06
2emk_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.06
2eow_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	96.05
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	96.04
2ytj_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	96.02
2eon_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	96.02
2em7_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	96.01
2ely_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	96.01
2eoj_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.01
2em3_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	96.0
2emx_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	96.0
2eq0_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.99
2el6_A	46	Zinc finger protein 268; alternative splicing, DNA	95.98
2eoe_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.96
2em5_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.95
2ytd_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.95
2eme_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.95
2emy_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.95
2em8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.95
2eof_A	44	Zinc finger protein 268; ZF-C2H2, structural genom	95.95
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.94
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	95.94
2ept_A	41	Zinc finger protein 32; C2H2, zinc finger domain,	95.93
2eop_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.93
2ep2_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.93
2ep0_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.92
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	95.91
2enc_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.91
2eq2_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.91
2emp_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.91
2yso_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.89
2ep3_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.88
2em9_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.88
2ema_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.88
2ytq_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.86
2eox_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	95.86
2ytp_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.85
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	95.83
2em0_A	46	Zinc finger protein 224; DNA-binding, metal-bindin	95.82
2em2_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.82
2ene_A	46	Zinc finger protein 347; ZF-C2H2, structural genom	95.81
2eml_A	46	Zinc finger protein 28 homolog; ZF-C2H2, structura	95.79
2yts_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.79
2emb_A	44	Zinc finger protein 473; ZF-C2H2, structural genom	95.78
2emf_A	46	Zinc finger protein 484; ZF-C2H2, structural genom	95.78
2el5_A	42	Zinc finger protein 268; alternative splicing, DNA	95.77
2yrj_A	46	Zinc finger protein 473; C2H2-type zinc finger, st	95.72
2ytf_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.7
2yu5_A	44	Zinc finger protein 473; ZF-C2H2 domain, structura	95.69
2en6_A	46	Zinc finger protein 268; ZF-C2H2, structural genom	95.64
1zfd_A	32	SWI5; DNA binding motif, zinc finger DNA binding d	95.63
2kfq_A	32	FP1; protein, de novo protein; NMR {Synthetic}	95.6
2en8_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.59
1va1_A	37	Transcription factor SP1; C2H2 type zinc finger, D	95.55
2eos_A	42	B-cell lymphoma 6 protein; ZF-C2H2, structural gen	95.53
1fv5_A	36	First zinc finger of U-shaped; CCHC, protein inter	95.5
2eoy_A	46	Zinc finger protein 473; ZF-C2H2, structural genom	95.49
2epr_A	48	POZ-, at HOOK-, and zinc finger-containing protein	95.42
2epq_A	45	POZ-, at HOOK-, and zinc finger-containing protein	95.41
2ytg_A	46	ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, s	95.38
2epw_A	46	Zinc finger protein 268; C2H2, zinc finger domain,	95.37
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	95.35
1x3c_A	73	Zinc finger protein 292; DNA binding, nuclear prot	95.35
2drp_A	66	Protein (tramtrack DNA-binding domain); protein-DN	95.34
2el4_A	46	Zinc finger protein 268; alternative splicing, DNA	95.33
2ct1_A	77	Transcriptional repressor CTCF; CCCTC-BINDING fact	95.29
2en1_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	95.26
3uk3_C	57	Zinc finger protein 217; transcription factor, DNA	95.2
2eq3_A	46	Zinc finger protein 347; C2H2, zinc finger domain,	95.19
2ytb_A	42	Zinc finger protein 32; zinc-finger domain, C2H2,	95.18
1bhi_A	38	CRE-BP1, ATF-2; CRE binding protein, transcription	95.14
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	95.11
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	95.07
2lv2_A	85	Insulinoma-associated protein 1; structural genomi	94.99
2epp_A	66	POZ-, at HOOK-, and zinc finger-containing protein	94.96
2ysp_A	46	Zinc finger protein 224; ZF-C2H2, structural genom	94.9
4gzn_C	60	ZFP-57, zinc finger protein 57; transcription-DNA	94.89
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	94.87
3jy6_A	276	Transcriptional regulator, LACI family; NYSGXRC, P	94.86
1x5w_A	70	Zinc finger protein 64, isoforms 1; ZNF338, nuclea	94.73
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	94.72
1sp2_A	31	SP1F2; zinc finger, transcription activation; NMR	94.72
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	94.7
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	94.69
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	94.54
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	94.49
2eln_A	38	Zinc finger protein 406; ZFAT zinc finger 1, struc	94.46
2adr_A	60	ADR1; transcription regulation, zinc finger,; NMR	94.37
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	94.34
3l6u_A	293	ABC-type sugar transport system periplasmic compo;	94.3
3o74_A	272	Fructose transport system repressor FRUR; dual tra	94.28
3gbv_A	304	Putative LACI-family transcriptional regulator; NY	94.24
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	94.17
1bbo_A	57	Human enhancer-binding protein MBP-1; DNA-binding	94.15
3m9w_A	313	D-xylose-binding periplasmic protein; xylose bindi	94.08
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	94.07
2ab3_A	29	ZNF29; zinc finger protein, beta BETA alpha, RREII	93.99
3tb6_A	298	Arabinose metabolism transcriptional repressor; tr	93.98
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	93.95
3l49_A	291	ABC sugar (ribose) transporter, periplasmic substr	93.86
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	93.83
3ksm_A	276	ABC-type sugar transport system, periplasmic COMP;	93.8
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	93.79
2gqj_A	98	Zinc finger protein KIAA1196; ZF-C2H2 like domain,	93.78
3h75_A	350	Periplasmic sugar-binding domain protein; protein	93.75
1x6f_A	88	Zinc finger protein 462; zinc finger domain, KIAA1	93.72
2d9h_A	78	Zinc finger protein 692; ZF-C2H2 domain, structura	93.67
2lce_A	74	B-cell lymphoma 6 protein; structural genomics, no	93.64
3k4h_A	292	Putative transcriptional regulator; structural gen	93.63
2fn9_A	290	Ribose ABC transporter, periplasmic ribose-bindin;	93.63
8abp_A	306	L-arabinose-binding protein; binding proteins; HET	93.62
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	93.6
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	93.59
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	93.57
1x6e_A	72	Zinc finger protein 24; ZNF24, KOX17, ZNF191, zsca	93.55
3huu_A	305	Transcription regulator like protein; PSI-II, NYSG	93.53
1gud_A	288	ALBP, D-allose-binding periplasmic protein; peripl	93.52
3g1w_A	305	Sugar ABC transporter; sugar-binding protein, baci	93.51
1x6h_A	86	Transcriptional repressor CTCF; zinc finger protei	93.51
3uug_A	330	Multiple sugar-binding periplasmic receptor CHVE;	93.46
2ghf_A	102	ZHX1, zinc fingers and homeoboxes protein 1; C2H2	93.42
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	93.41
2dri_A	271	D-ribose-binding protein; sugar transport; HET: RI	93.39
3hcw_A	295	Maltose operon transcriptional repressor; RNA-bind	93.26
3dbi_A	338	Sugar-binding transcriptional regulator, LACI FAM;	93.24
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	93.23
3sho_A	187	Transcriptional regulator, RPIR family; structural	92.96
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	92.95
1llm_C	88	Chimera of ZIF23-GCN4; dimerization, DNA recogniti	92.88
2fep_A	289	Catabolite control protein A; CCPA, transcriptiona	92.84
2vk2_A	306	YTFQ, ABC transporter periplasmic-binding protein	92.81
1wjp_A	107	Zinc finger protein 295; ZF-C2H2 domain, zinc bind	92.79
1tjy_A	316	Sugar transport protein; protein-ligand complex, s	92.67
1ncs_A	47	Peptide M30F, transcriptional factor SWI5; DNA bin	92.61
3d8u_A	275	PURR transcriptional regulator; APC91343.1, vibrio	92.56
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	92.55
2rgy_A	290	Transcriptional regulator, LACI family; 11011J, NY	92.54
2h3h_A	313	Sugar ABC transporter, periplasmic sugar-binding p	92.46
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	92.44
2ioy_A	283	Periplasmic sugar-binding protein; ribose binding	92.37
2lt7_A	133	Transcriptional regulator kaiso; zinc finger, doub	92.37
3egc_A	291	Putative ribose operon repressor; structural genom	92.28
2fvy_A	309	D-galactose-binding periplasmic protein; periplasm	92.2
1f2i_G	73	Fusion of N-terminal 17-MER peptide extension to Z	92.15
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	92.14
2yt9_A	95	Zinc finger-containing protein 1; C2H2, structural	92.06
2kmk_A	82	Zinc finger protein GFI-1; tandem repeat zinc fing	92.06
3e3m_A	355	Transcriptional regulator, LACI family; structural	92.02
2cot_A	77	Zinc finger protein 435; ADK_LID domain, zinc fing	92.01
2dlk_A	79	Novel protein; ZF-C2H2 domain, zinc finger protein	91.94
3brq_A	296	HTH-type transcriptional regulator ASCG; transcrip	91.87
3rot_A	297	ABC sugar transporter, periplasmic sugar binding;	91.8
2dmi_A	115	Teashirt homolog 3; zinc finger protein 537, struc	91.79
3kke_A	303	LACI family transcriptional regulator; structural	91.66
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	91.63
1zr9_A	124	Zinc finger protein 593; DNA binding, structural g	91.59
3gv0_A	288	Transcriptional regulator, LACI family; transcript	91.52
3kjx_A	344	Transcriptional regulator, LACI family; LACL famil	91.39
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	91.37
2rjo_A	332	Twin-arginine translocation pathway signal protei;	91.3
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	91.3
2ee8_A	106	Protein ODD-skipped-related 2; zinc binding, ZF-C2	91.29
3h5o_A	339	Transcriptional regulator GNTR; transcription regu	91.1
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	90.86
2dlq_A	124	GLI-kruppel family member HKR3; ZF-C2H2 domain, st	90.86
1a1h_A	90	QGSR zinc finger peptide; complex (zinc finger/DNA	90.81
2dmd_A	96	Zinc finger protein 64, isoforms 1 and 2; ZNF338,	90.62
3mjh_B	34	Early endosome antigen 1; protein-zinc finger comp	90.61
3e61_A	277	Putative transcriptional repressor of ribose OPER;	90.6
3d02_A	303	Putative LACI-type transcriptional regulator; peri	90.59
2eod_A	66	TNF receptor-associated factor 4; zinc binding, NF	90.45
3c3k_A	285	Alanine racemase; structural genomics, protein str	90.24
2o20_A	332	Catabolite control protein A; CCPA, transcriptiona	90.23
2x7x_A	325	Sensor protein; transferase, sensor histidine kina	90.2
3o1i_D	304	Periplasmic protein TORT; ligand free, two compone	90.2
3bbl_A	287	Regulatory protein of LACI family; protein structu	90.17
2ctd_A	96	Zinc finger protein 512; zinc binding, two ZF-C2H2	90.15
1jx6_A	342	LUXP protein; protein-ligand complex, signaling pr	90.14
2iks_A	293	DNA-binding transcriptional dual regulator; escher	90.06
2wbt_A	129	B-129; zinc finger; 2.70A {Sulfolobus virus 1}	90.01
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	89.85
3bil_A	348	Probable LACI-family transcriptional regulator; st	89.67
3brs_A	289	Periplasmic binding protein/LACI transcriptional;	89.58
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	89.5
3qk7_A	294	Transcriptional regulators; structural genomics, N	89.49
2l69_A	134	Rossmann 2X3 fold protein; structural genomics, no	89.44
2l82_A	162	Designed protein OR32; structural genomics, northe	89.41
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	89.34
3clk_A	290	Transcription regulator; 11017J, PSI-II, NYSGXRC,	89.33
2gli_A	155	Protein (five-finger GLI); protein/DNA complex, tr	89.32
2hsg_A	332	Glucose-resistance amylase regulator; CCPA, transc	89.11
3k9c_A	289	Transcriptional regulator, LACI family protein; PS	89.09
2ent_A	48	Krueppel-like factor 15; zinc binding, transcripti	88.89
2csh_A	110	Zinc finger protein 297B; ZF-C2H2 domain, zinc fin	88.85
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	88.67
1dbq_A	289	Purine repressor; transcription regulation, DNA-bi	88.57
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	88.21
2epa_A	72	Krueppel-like factor 10; transforming growth facto	88.19
1tk9_A	188	Phosphoheptose isomerase 1; lipopolysaccharide bio	87.79
2j7j_A	85	Transcription factor IIIA; zinc finger module, alt	87.79
2epa_A	72	Krueppel-like factor 10; transforming growth facto	87.49
2xbl_A	198	Phosphoheptose isomerase; capsule; HET: M7P PGE PG	87.47
2ej4_A	95	Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc bi	86.96
2jp9_A	119	Wilms tumor 1; DNA binding, nucleic acid recogniti	86.86
3l8h_A	179	Putative haloacid dehalogenase-like hydrolase; HAD	86.75
2rpc_A	155	Zinc finger protein ZIC 3; ZF-C2H2, zinc finger pr	86.41
1m3s_A	186	Hypothetical protein YCKF; structural genomics, PS	85.96
1vd4_A	62	Transcription initiation factor IIE, alpha subunit	85.94
3miz_A	301	Putative transcriptional regulator protein, LACI f	85.86
2i13_A	190	AART; DNA binding, zinc finger, DNA binding protei	85.49
2h0a_A	276	TTHA0807, transcriptional regulator; repressor, st	85.3
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	84.6
2i2w_A	212	Phosphoheptose isomerase; lipopolysaccharide biosy	84.35
3hs3_A	277	Ribose operon repressor; PSI-II, NYSGXRC, periplas	84.32
2wbs_A	89	Krueppel-like factor 4; transcription-DNA complex,	84.03
2e72_A	49	POGO transposable element with ZNF domain; zinc fi	83.91
1jeo_A	180	MJ1247, hypothetical protein MJ1247; RUMP pathway,	83.9
3mmz_A	176	Putative HAD family hydrolase; structural genomics	83.64
2qv7_A	337	Diacylglycerol kinase DGKB; alpha-beta domain 1, b	83.26
1x92_A	199	APC5045, phosphoheptose isomerase; midwest centre	82.83
1ubd_C	124	Protein (YY1 zinc finger domain); transcription in	82.64
1tf6_A	190	Protein (transcription factor IIIA); complex (tran	82.59
1vim_A	200	Hypothetical protein AF1796; structural genomics,	82.58
1qpz_A	340	PURA, protein (purine nucleotide synthesis repress	82.19
1zw8_A	64	Zinc-responsive transcriptional regulator ZAP1; in	82.17
2xhz_A	183	KDSD, YRBH, arabinose 5-phosphate isomerase; lipop	82.17
2ctu_A	73	Zinc finger protein 483; zinc finger domain, struc	82.15
3trj_A	201	Phosphoheptose isomerase; lipopolysaccharide biosy	82.1
3fxa_A	201	SIS domain protein; structural genomics, joint cen	81.49
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	81.39
2yva_A	196	DNAA initiator-associating protein DIAA; intermole	81.22
1pea_A	385	Amidase operon; gene regulator, receptor, binding	80.72
2ebt_A	100	Krueppel-like factor 5; C2H2-type zinc-finger, met	80.25
2wm8_A	187	MDP-1, magnesium-dependent phosphatase 1; haloacid	80.06

>2qip_A Protein of unknown function VPA0982; APC85975, vibrio parahaemolyticus RIMD 2210633, STR genomics, PSI-2, protein structure initiative; 1.48A {Vibrio parahaemolyticus}

Probab=99.25  E-value=1.2e-11  Score=99.39  Aligned_cols=81  Identities=23%  Similarity=0.190  Sum_probs=69.4

Q ss_pred             hhhhhhhhcEEEEEccc-------cchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHc-CCeEEEecCC-
Q 046085          106 LVVKLKRVWFWVRTMSD-------KLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLR-CLKTGVAGYM-  176 (230)
Q Consensus       106 La~eLrRAGv~VrtV~d-------KpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer-~l~TVVVGd~-  176 (230)
                      +...|++.||.|.+.|-       ..+++|++|.-+|++..  ..+|++||||.|+||+++++.+|++ |.+++|+|-. 
T Consensus        66 ~~~~L~~~g~~v~~~p~~~~~~~~~k~~~Dv~laiD~~~~a--~~~d~~vLvSgD~DF~plv~~lr~~~G~~V~v~g~~~  143 (165)
T 2qip_A           66 FHHILRGVGFEVMLKPYIQRRDGSAKGDWDVGITLDAIEIA--PDVDRVILVSGDGDFSLLVERIQQRYNKKVTVYGVPR  143 (165)
T ss_dssp             HHHHHHHHTCEEEECCCCCCSSCCCSCCCHHHHHHHHHHHG--GGCSEEEEECCCGGGHHHHHHHHHHHCCEEEEEECGG
T ss_pred             HHHHHHHCCcEEEEEeeeeccCCccCCCccHHHHHHHHHhh--ccCCEEEEEECChhHHHHHHHHHHHcCcEEEEEeCCC
Confidence            44678888999886543       34699999999999986  5899999999999999999999998 9999999964 


Q ss_pred             -CCchhhhhhhcc
Q 046085          177 -NDGTLKRIADRL  188 (230)
Q Consensus       177 -~~~aL~r~AD~l  188 (230)
                       +..+|.+.||.|
T Consensus       144 ~~s~~L~~~ad~f  156 (165)
T 2qip_A          144 LTSQTLIDCADNF  156 (165)
T ss_dssp             GSCHHHHHHSSEE
T ss_pred             cChHHHHHhCCEE
Confidence             678899999943

>1paa_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=97.01  E-value=0.00011  Score=40.60  Aligned_cols=27  Identities=22%  Similarity=0.314  Sum_probs=23.9

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      || .|..|| ..|.+...|..|...+|..
T Consensus         2 ~~-~C~~C~-k~f~~~~~l~~H~~~~H~~   28 (30)
T 1paa_A            2 AY-ACGLCN-RAFTRRDLLIRHAQKIHSG   28 (30)
T ss_dssp             CS-BCTTTC-CBCSSSHHHHHHHTTTSCC
T ss_pred             Cc-CCcccC-cccCChHHHHHHHHHHccC
Confidence            79 999999 9999999999997667754

>2elr_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.87  E-value=0.00042  Score=39.94  Aligned_cols=28  Identities=18%  Similarity=0.246  Sum_probs=23.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+|| ..|.+...|..|.+ +|.
T Consensus         6 ~~~~~-~C~~C~-k~f~~~~~l~~H~~-~H~   33 (36)
T 2elr_A            6 SGKTH-LCDMCG-KKFKSKGTLKSHKL-LHT   33 (36)
T ss_dssp             CCSSC-BCTTTC-CBCSSHHHHHHHHH-HHS
T ss_pred             CCCCe-ecCcCC-CCcCchHHHHHHHH-Hhc
Confidence            45789 999999 99999999999964 564

>2epx_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.75  E-value=0.00039  Score=42.47  Aligned_cols=32  Identities=28%  Similarity=0.485  Sum_probs=27.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+.+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~~~H~~~   39 (47)
T 2epx_A            8 TGKKPY-ECIECG-KAFIQNTSLIRHWRYYHTGE   39 (47)
T ss_dssp             CCCCSB-CCSSSC-CCBSSHHHHHHHHTTTTTTS
T ss_pred             CCCCCE-ECCccC-chhCChHHHHHHhHhhcCCC
Confidence            346799 999999 99999999999987677544

>1rim_A E6APC2 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1

Probab=96.73  E-value=0.00057  Score=39.70  Aligned_cols=28  Identities=18%  Similarity=0.240  Sum_probs=24.1

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      || .|.+|| ..|.+...|..|.+ +|..|+
T Consensus         2 p~-~C~~C~-k~F~~~~~L~~H~~-~H~~~~   29 (33)
T 1rim_A            2 KF-ACPECP-KRFMRSDHLSKHIT-LHELLG   29 (33)
T ss_dssp             CC-CCSSSC-CCCSSHHHHHHHHH-HHTTTC
T ss_pred             cc-cCCCCC-chhCCHHHHHHHHH-HhCCCC
Confidence            89 999999 99999999999964 676553

>1znf_A 31ST zinc finger from XFIN; zinc finger DNA binding domain; NMR {Xenopus laevis} SCOP: g.37.1.1

Probab=96.71  E-value=0.00041  Score=37.42  Aligned_cols=22  Identities=14%  Similarity=0.153  Sum_probs=19.5

Q ss_pred             CcccccccCCCcccCchHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      || .|..|| ..|.....|..|.+
T Consensus         1 ~~-~C~~C~-k~f~~~~~l~~H~~   22 (27)
T 1znf_A            1 XY-KCGLCE-RSFVEKSALSRHQR   22 (27)
T ss_dssp             -C-BCSSSC-CBCSSHHHHHHHGG
T ss_pred             Cc-cCCCCC-CcCCCHHHHHHHHH
Confidence            78 999999 99999999999964

>2els_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.67  E-value=0.00047  Score=39.99  Aligned_cols=29  Identities=14%  Similarity=0.159  Sum_probs=24.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .+..|| .|.+|| ..|.....|..|.+ +|.
T Consensus         5 ~~~k~~-~C~~C~-k~f~~~~~l~~H~~-~H~   33 (36)
T 2els_A            5 SSGKIF-TCEYCN-KVFKFKHSLQAHLR-IHT   33 (36)
T ss_dssp             SCCCCE-ECTTTC-CEESSHHHHHHHHH-HHC
T ss_pred             CCCCCE-ECCCCC-ceeCCHHHHHHHHH-HhC
Confidence            356799 999999 99999999999965 564

>2m0f_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.63  E-value=0.0006  Score=36.90  Aligned_cols=26  Identities=23%  Similarity=0.373  Sum_probs=22.5

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      || .|..|| ..|.+...|..|.+ +|..
T Consensus         2 ~~-~C~~C~-k~f~~~~~l~~H~~-~H~~   27 (29)
T 2m0f_A            2 PL-KCRECG-KQFTTSGNLKRHLR-IHSG   27 (29)
T ss_dssp             CE-ECTTTS-CEESCHHHHHHHHH-HHHT
T ss_pred             Cc-cCCCCC-CccCChhHHHHHHH-HhcC
Confidence            89 999999 99999999999964 5654

>2elq_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.63  E-value=0.00059  Score=39.57  Aligned_cols=30  Identities=13%  Similarity=0.244  Sum_probs=24.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.....|..|. .+|..
T Consensus         5 ~~~k~~-~C~~C~-k~f~~~~~l~~H~-~~H~~   34 (36)
T 2elq_A            5 SSGKPF-KCSLCE-YATRSKSNLKAHM-NRHST   34 (36)
T ss_dssp             CCCCSE-ECSSSS-CEESCHHHHHHHH-HHSST
T ss_pred             CCCCCc-cCCCCC-chhCCHHHHHHHH-HHhcc
Confidence            346799 999999 9999999999996 45643

>2m0e_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.63  E-value=0.00072  Score=36.43  Aligned_cols=27  Identities=19%  Similarity=0.126  Sum_probs=23.0

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      .|| .|..|| ..|.....|..|-+ +|..
T Consensus         1 k~~-~C~~C~-~~f~~~~~l~~H~~-~h~~   27 (29)
T 2m0e_A            1 KEH-KCPHCD-KKFNQVGNLKAHLK-IHIA   27 (29)
T ss_dssp             CCC-CCSSCC-CCCCTTTHHHHHHH-HHHS
T ss_pred             CCC-cCCCCC-cccCCHHHHHHHHH-Hhcc
Confidence            389 999999 99999999999974 5654

>1njq_A Superman protein; zinc-finger, peptide-zinc complex, beta-BETA-ALFA motif, metal binding protein; NMR {Synthetic} SCOP: g.37.1.3 PDB: 2l1o_A

Probab=96.61  E-value=0.00047  Score=40.94  Aligned_cols=30  Identities=20%  Similarity=0.419  Sum_probs=25.1

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      +..|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         3 ~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   32 (39)
T 1njq_A            3 PPRSY-TCSFCK-REFRSAQALGGHMN-VHRRD   32 (39)
T ss_dssp             CSSSE-ECTTTC-CEESSHHHHHHHHH-TTCCS
T ss_pred             CCCce-ECCCCC-cccCCHHHHHHHHH-HcCCC
Confidence            46799 999999 99999999999954 56543

>3iuf_A Zinc finger protein UBI-D4; structural genomics consortium (SGC), C2H2, APO metal-binding, nucleus, phosphoprotein, transcription, TRAN regulation; 1.80A {Homo sapiens}

Probab=96.60  E-value=0.00058  Score=43.20  Aligned_cols=34  Identities=26%  Similarity=0.396  Sum_probs=26.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKK   63 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr~K   63 (230)
                      ...|| .|.+|| ..|.....|.+|.+.+|..|...
T Consensus         4 ~~kp~-~C~~C~-k~F~~~~~L~~H~~~~H~~e~~~   37 (48)
T 3iuf_A            4 RDKPY-ACDICG-KRYKNRPGLSYHYAHSHLAEEEG   37 (48)
T ss_dssp             TTSCE-ECTTTC-CEESSHHHHHHHHHHSSCC----
T ss_pred             CCcCE-ECCCcC-cccCCHHHHHHHhhhhcCCCCCC
Confidence            35699 999999 99999999999998788766543

>1ard_A Yeast transcription factor ADR1; transcription regulation; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 PDB: 1arf_A 1are_A

Probab=96.60  E-value=0.00065  Score=36.89  Aligned_cols=26  Identities=15%  Similarity=0.339  Sum_probs=22.4

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .|| .|.+|| ..|.....|..|.+ +|.
T Consensus         1 k~~-~C~~C~-~~f~~~~~l~~H~~-~h~   26 (29)
T 1ard_A            1 RSF-VCEVCT-RAFARQEHLKRHYR-SHT   26 (29)
T ss_dssp             CCC-BCTTTC-CBCSSHHHHHHHHH-HHS
T ss_pred             CCe-ECCCCC-cccCCHHHHHHHHH-Hhc
Confidence            389 999999 99999999999965 454

>2en3_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.59  E-value=0.001  Score=40.64  Aligned_cols=31  Identities=19%  Similarity=0.344  Sum_probs=26.3

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~-~~H~~~   38 (46)
T 2en3_A            8 TGEKPF-QCKECG-MNFSWSCSLFKHL-RSHERT   38 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSSHHHHHHH-HHHHHS
T ss_pred             CCCCCe-eCcccC-hhhCCHHHHHHHH-HHhCCC
Confidence            356799 999999 9999999999997 467654

>2lvt_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.60  E-value=0.00034  Score=38.48  Aligned_cols=27  Identities=22%  Similarity=0.428  Sum_probs=23.2

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      || .|..|| ..|.....|..|-+ +|..|
T Consensus         2 ~~-~C~~C~-k~f~~~~~l~~H~~-~H~~~   28 (29)
T 2lvt_A            2 PC-QCVMCG-KAFTQASSLIAHVR-QHTGE   28 (29)
Confidence            79 999999 99999999999964 66544

>2elt_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.56  E-value=0.00069  Score=38.98  Aligned_cols=29  Identities=17%  Similarity=0.181  Sum_probs=24.4

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ...|| .|..|| ..|.....|..|.+ +|..
T Consensus         6 ~~k~~-~C~~C~-k~f~~~~~l~~H~~-~H~~   34 (36)
T 2elt_A            6 SGKPY-KCPQCS-YASAIKANLNVHLR-KHTG   34 (36)
T ss_dssp             CCCSE-ECSSSS-CEESSHHHHHHHHH-HHTC
T ss_pred             CCCCC-CCCCCC-cccCCHHHHHHHHH-HccC
Confidence            35699 999999 99999999999964 5643

>1rik_A E6APC1 peptide; E6-binding domain, zinc finger, human papillomavirus, HPV E6 protein, de novo protein; NMR {Synthetic} SCOP: k.12.1.1 PDB: 1sp1_A 1va3_A

Probab=96.56  E-value=0.00047  Score=37.65  Aligned_cols=25  Identities=20%  Similarity=0.282  Sum_probs=22.0

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|..|| ..|.+...|..|.+ +|.
T Consensus         2 ~~-~C~~C~-k~f~~~~~l~~H~~-~H~   26 (29)
T 1rik_A            2 KF-ACPECP-KRFMRSDHLTLHIL-LHE   26 (29)
T ss_dssp             CE-ECSSSS-CEESCSHHHHHHHT-GGG
T ss_pred             Cc-cCCCCC-chhCCHHHHHHHHH-Hhc
Confidence            79 999999 99999999999964 464

>1srk_A Zinc finger protein ZFPM1; classical zinc finger, transcription; NMR {Mus musculus} SCOP: g.37.1.1

Probab=96.55  E-value=0.00066  Score=38.99  Aligned_cols=28  Identities=14%  Similarity=0.295  Sum_probs=23.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+|| ..|.+...|..|.+ +|.
T Consensus         4 ~~k~~-~C~~C~-k~f~~~~~l~~H~~-~H~   31 (35)
T 1srk_A            4 GKRPF-VCRICL-SAFTTKANCARHLK-VHT   31 (35)
T ss_dssp             CCSCE-ECSSSC-CEESSHHHHHHHHG-GGT
T ss_pred             CCcCe-eCCCCC-cccCCHHHHHHHHH-HcC
Confidence            45789 999999 99999999999964 464

>1p7a_A BF3, BKLF, kruppel-like factor 3; classical zinc finger, transcription factor, DNA binding protein; NMR {Mus musculus} SCOP: g.37.1.1 PDB: 1u85_A 1u86_A

Probab=96.49  E-value=0.0018  Score=37.53  Aligned_cols=27  Identities=22%  Similarity=0.204  Sum_probs=23.1

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ...|| .|.+|| ..|.+...|..|.+ +|
T Consensus         8 ~~k~~-~C~~C~-k~f~~~~~l~~H~~-~H   34 (37)
T 1p7a_A            8 GIKPF-QCPDCD-RSFSRSDHLALHRK-RH   34 (37)
T ss_dssp             CSSSB-CCTTTC-CCBSSHHHHHHHHG-GG
T ss_pred             CCCCc-cCCCCC-cccCcHHHHHHHHH-Hh
Confidence            45699 999999 99999999999954 34

>2eps_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=96.49  E-value=0.0006  Score=43.75  Aligned_cols=31  Identities=32%  Similarity=0.519  Sum_probs=27.5

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.+|| ..|.+...|..|.+++|..|
T Consensus         9 ~~k~~-~C~~C~-k~f~~~~~L~~H~~~~H~~~   39 (54)
T 2eps_A            9 VGKPY-ICQSCG-KGFSRPDHLNGHIKQVHTSE   39 (54)
T ss_dssp             SSCCE-ECSSSC-CEESSHHHHHHHHHHTSCCC
T ss_pred             CCCCe-ECCCCC-cccCCHHHHHHHHHHhcCCC
Confidence            45789 999999 99999999999999888654

>2elv_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.47  E-value=0.00068  Score=39.30  Aligned_cols=28  Identities=14%  Similarity=0.086  Sum_probs=23.8

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+|| ..|.....|..|.+ +|.
T Consensus         6 ~~k~~-~C~~C~-k~f~~~~~l~~H~~-~H~   33 (36)
T 2elv_A            6 SGLLY-DCHICE-RKFKNELDRDRHML-VHG   33 (36)
T ss_dssp             CCCCE-ECSSSC-CEESSHHHHHHHHT-TTS
T ss_pred             CCCCe-ECCCCC-CccCCHHHHHHHHH-Hhc
Confidence            45689 999999 99999999999964 454

>2lvr_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, classical zinc finger, transcription; NMR {Homo sapiens}

Probab=95.46  E-value=0.00047  Score=37.78  Aligned_cols=28  Identities=29%  Similarity=0.487  Sum_probs=23.3

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .|| .|..|| ..|.+...|..|.+ +|..|
T Consensus         2 k~~-~C~~C~-k~f~~~~~l~~H~~-~h~~~   29 (30)
T 2lvr_A            2 KPY-VCIHCQ-RQFADPGALQRHVR-IHTGE   29 (30)
Confidence            489 999999 99999999999965 46443

>2elx_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=96.45  E-value=0.00097  Score=37.97  Aligned_cols=29  Identities=10%  Similarity=0.128  Sum_probs=24.3

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ...|| .|..|| ..|.....|..|.+ +|..
T Consensus         4 ~~k~~-~C~~C~-k~f~~~~~L~~H~~-~h~~   32 (35)
T 2elx_A            4 GSSGY-VCALCL-KKFVSSIRLRSHIR-EVHG   32 (35)
T ss_dssp             CCCSE-ECSSSC-CEESSHHHHHHHHH-HTSC
T ss_pred             CCCCe-ECCCCc-chhCCHHHHHHHHH-HHcC
Confidence            45689 999999 99999999999965 4543

>2elp_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.44  E-value=0.0012  Score=38.40  Aligned_cols=29  Identities=14%  Similarity=0.140  Sum_probs=24.4

Q ss_pred             CCCCcccccccCCCcccCc-hHHHHHHHHHhHH
Q 046085           28 PAEPYVLVIVEGDLRLYNN-DKLVNHFKQIHKR   59 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~-~kL~kHFkqlHeR   59 (230)
                      ...|| .|.+|| ..|... ..|..|.+ +|..
T Consensus         6 ~~k~~-~C~~C~-k~f~~~~~~L~~H~~-~H~~   35 (37)
T 2elp_A            6 SGRAM-KCPYCD-FYFMKNGSDLQRHIW-AHEG   35 (37)
T ss_dssp             CCCCE-ECSSSS-CEECSSCHHHHHHHH-HHHT
T ss_pred             CCCCe-ECCCCC-hhhccCHHHHHHHHH-hcCC
Confidence            45789 999999 999999 99999974 5653

>2m0d_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc fingers, transcription; NMR {Homo sapiens}

Probab=96.42  E-value=0.0014  Score=35.47  Aligned_cols=26  Identities=19%  Similarity=0.356  Sum_probs=22.6

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .|| .|..|| ..|.+...|..|.+ +|.
T Consensus         2 k~~-~C~~C~-~~f~~~~~l~~H~~-~h~   27 (30)
T 2m0d_A            2 KPY-QCDYCG-RSFSDPTSKMRHLE-THD   27 (30)
T ss_dssp             CCE-ECTTTC-CEESCHHHHHHHHH-TTC
T ss_pred             cCc-cCCCCC-cccCCHHHHHHHHH-Hhc
Confidence            589 999999 99999999999975 453

>2kvh_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.42  E-value=0.0016  Score=35.40  Aligned_cols=23  Identities=13%  Similarity=0.290  Sum_probs=21.0

Q ss_pred             CCcccccccCCCcccCchHHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      .|| .|..|| ..|.+...|..|.+
T Consensus         2 k~~-~C~~C~-k~f~~~~~l~~H~~   24 (27)
T 2kvh_A            2 KPF-SCSLCP-QRSRDFSAMTKHLR   24 (27)
T ss_dssp             CCE-ECSSSS-CEESSHHHHHHHHH
T ss_pred             cCc-cCCCcC-hhhCCHHHHHHHHH
Confidence            589 999999 99999999999964

>2enf_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.41  E-value=0.0011  Score=40.52  Aligned_cols=31  Identities=32%  Similarity=0.382  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~-~~H~~~   38 (46)
T 2enf_A            8 TGEKPY-KCNECG-KVFTQNSHLVRHR-GIHTGE   38 (46)
T ss_dssp             CCCCSC-BCSSSC-CBCSSHHHHHHHH-TTTTTS
T ss_pred             CCCcCe-ECCCCC-cccCCHHHHHHHH-HhhCCC
Confidence            456799 999999 9999999999996 467544

>2emz_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.40  E-value=0.0024  Score=39.09  Aligned_cols=31  Identities=23%  Similarity=0.400  Sum_probs=26.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2emz_A            8 SGERPF-KCNECG-KGFGRRSHLAGHLR-LHSRE   38 (46)
T ss_dssp             SCCCSC-CCSSSC-CCCSSHHHHHHHHH-HHHHT
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999965 67655

>2eoz_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.38  E-value=0.00085  Score=41.13  Aligned_cols=31  Identities=26%  Similarity=0.440  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eoz_A            8 TGEKPY-SCNVCG-KAFVLSAHLNQHLR-VHTQE   38 (46)
T ss_dssp             SSCCSE-EETTTT-EEESSHHHHHHHHH-HHSSC
T ss_pred             CCCCCe-ECcccC-hhhCCHHHHHHHHH-HhCCC
Confidence            456799 999999 99999999999964 56543

>2yte_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.37  E-value=0.0013  Score=39.15  Aligned_cols=30  Identities=27%  Similarity=0.392  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         6 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   35 (42)
T 2yte_A            6 SGEKPY-SCAECK-ETFSDNNRLVQHQK-MHTV   35 (42)
T ss_dssp             CSCCSC-BCTTTC-CBCSSHHHHHHHHH-HTSC
T ss_pred             CCCCCe-ECCCCC-CccCCHHHHHHHHH-HhCC
Confidence            346799 999999 99999999999965 4643

>2en2_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.37  E-value=0.00097  Score=39.87  Aligned_cols=31  Identities=26%  Similarity=0.335  Sum_probs=26.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         7 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   37 (42)
T 2en2_A            7 GGEKPY-KCETCG-ARFVQVAHLRAHVL-IHTGS   37 (42)
T ss_dssp             CSSCSE-ECTTTC-CEESSHHHHHHHTH-HHHSC
T ss_pred             CCCCCE-eCCCcC-hhhCCHHHHHHHHH-HcCCC
Confidence            356799 999999 99999999999975 67544

>2lvu_A Zinc finger and BTB domain-containing protein 17; C2H2 zinc finger, transcription; NMR {Homo sapiens}

Probab=95.37  E-value=0.00057  Score=36.94  Aligned_cols=22  Identities=32%  Similarity=0.619  Sum_probs=20.3

Q ss_pred             CcccccccCCCcccCchHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      || .|..|| ..|.+...|..|-+
T Consensus         2 p~-~C~~C~-k~f~~~~~l~~H~~   23 (26)
T 2lvu_A            2 PY-VCERCG-KRFVQSSQLANHIR   23 (26)
Confidence            89 999999 99999999999954

>2ytt_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.36  E-value=0.0018  Score=39.65  Aligned_cols=31  Identities=26%  Similarity=0.417  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ytt_A            8 EGEKPY-QCSECG-KSFSGSYRLTQHWI-THTRE   38 (46)
T ss_dssp             SCCCTT-CCSSSC-CCCSSHHHHHHHHT-HHHHC
T ss_pred             CCCCCe-eCCCCC-cccCCHHHHHHHHH-HcCCC
Confidence            456789 999999 99999999999964 57654

>2eov_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.35  E-value=0.0014  Score=39.86  Aligned_cols=30  Identities=23%  Similarity=0.220  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2eov_A            8 TGEKPY-KCSDCG-KSFTWKSRLRIHQK-CHTG   37 (46)
T ss_dssp             SSCCSC-BCSSSC-CBCSSHHHHHHHHH-HHSC
T ss_pred             CCCCCc-cCCccC-hhhCCHHHHHHHHH-hcCC
Confidence            346799 999999 99999999999964 6753

>2eoo_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.34  E-value=0.0016  Score=39.90  Aligned_cols=31  Identities=29%  Similarity=0.379  Sum_probs=26.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2eoo_A            8 SGERPY-GCNECG-KNFGRHSHLIEHLK-RHFRE   38 (46)
T ss_dssp             SCCCCE-ECSSSC-CEESSHHHHHHHHH-HHHST
T ss_pred             CCCCCE-EccccC-cccCCHHHHHHHHH-HHcCC
Confidence            456799 999999 99999999999964 47654

>2en9_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.33  E-value=0.0016  Score=39.90  Aligned_cols=31  Identities=16%  Similarity=0.121  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2en9_A            8 AGKKLF-KCNECK-KTFTQSSSLTVHQR-IHTGE   38 (46)
T ss_dssp             CSSCCC-BCTTTC-CBCSSHHHHHHHHH-HHTSS
T ss_pred             CCCCCE-ECCccC-cccCCHHHHHHHHH-HcCCC
Confidence            346799 999999 99999999999965 57543

>2eor_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.29  E-value=0.0015  Score=39.75  Aligned_cols=31  Identities=26%  Similarity=0.399  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eor_A            8 TGEKPY-NCEECG-KAFIHDSQLQEHQR-IHTGE   38 (46)
T ss_dssp             SCCCSE-ECTTTC-CEESSHHHHHHHHH-HHHSC
T ss_pred             CCCcCc-cCCCCC-CCcCCHHHHHHHHH-hcCCC
Confidence            356799 999999 99999999999964 57543

>1klr_A Zinc finger Y-chromosomal protein; transcription; NMR {Synthetic} SCOP: g.37.1.1 PDB: 5znf_A 1kls_A 1xrz_A* 7znf_A

Probab=96.29  E-value=0.0027  Score=34.31  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=21.0

Q ss_pred             CcccccccCCCcccCchHHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      || .|..|| ..|.+...|..|-+.
T Consensus         2 ~~-~C~~C~-k~f~~~~~l~~H~~~   24 (30)
T 1klr_A            2 TY-QCQYCE-FRSADSSNLKTHIKT   24 (30)
T ss_dssp             CC-CCSSSS-CCCSCSHHHHHHHHH
T ss_pred             Cc-cCCCCC-CccCCHHHHHHHHHH
Confidence            79 999999 999999999999653

>2eom_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.27  E-value=0.0016  Score=40.02  Aligned_cols=31  Identities=16%  Similarity=0.160  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2eom_A            8 HGERGH-RCSDCG-KFFLQASNFIQHRR-IHTGE   38 (46)
T ss_dssp             CCCSSC-CCSSSC-CCCSSHHHHHHHHH-HHSSC
T ss_pred             CCCCCc-CCCCCC-CeeCChHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999965 56543

>2en7_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.26  E-value=0.0012  Score=39.72  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (44)
T 2en7_A            8 TGMKPY-VCNECG-KAFRSKSYLIIHT-RTHTGE   38 (44)
T ss_dssp             SSSSSS-CCTTTC-CCCSSHHHHHHHH-TTTCCS
T ss_pred             CCCcCe-ECCCCC-CccCCHHHHHHHh-hhcCCC
Confidence            356799 999999 9999999999997 456443

>2eou_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.23  E-value=0.002  Score=39.05  Aligned_cols=31  Identities=16%  Similarity=0.138  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (44)
T 2eou_A            8 AAKTTS-ECQECG-KIFRHSSLLIEHQA-LHAGE   38 (44)
T ss_dssp             SSSCCC-CCTTTC-CCCSSHHHHHHHHH-HHTTS
T ss_pred             CCCcCe-ECCCCC-cccCCHHHHHHHHH-HHCCC
Confidence            346789 999999 99999999999964 56543

>2yti_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.23  E-value=0.0012  Score=40.24  Aligned_cols=31  Identities=29%  Similarity=0.347  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~-~~H~~~   38 (46)
T 2yti_A            8 TGEKPY-KCNECG-KVFTQNSHLARHR-GIHTGE   38 (46)
T ss_dssp             SCCCTT-CCSSSC-CCCSSHHHHHHHH-TTTSCS
T ss_pred             CCCcCe-ECCCCC-cccCChhHHHHHh-HhcCCC
Confidence            456799 999999 9999999999995 456543

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=96.22  E-value=0.00095  Score=48.73  Aligned_cols=32  Identities=19%  Similarity=0.292  Sum_probs=21.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+.+|..|
T Consensus        52 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~~~H~~E   83 (85)
T 2lv2_A           52 HAAQVF-PCKYCP-ATFYSSPGLTRHINKCHPSE   83 (85)
T ss_dssp             SCSSSE-ECTTSS-CEESSHHHHHHHHHTTCTTC
T ss_pred             cCCCcc-CCCCCC-CEeCCHHHHHHhCcccCcCC
Confidence            345567 777777 77777777777776666554

>2emj_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eoi_A

Probab=96.22  E-value=0.0016  Score=39.89  Aligned_cols=31  Identities=23%  Similarity=0.340  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emj_A            8 TGEKPF-ECAECG-KSFSISSQLATHQR-IHTGE   38 (46)
T ss_dssp             CCCCSE-ECSSSS-CEESSHHHHHHHHH-HHTTS
T ss_pred             CCCCCE-ECCCCC-cccCCHHHHHHHHH-HhCCC
Confidence            356799 999999 99999999999965 57543

>2eoh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.22  E-value=0.0015  Score=40.01  Aligned_cols=31  Identities=19%  Similarity=0.226  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eoh_A            8 SGKKPY-ECKECR-KTFIQIGHLNQHKR-VHTGE   38 (46)
T ss_dssp             CCSCSC-CCSSSC-CCCSSHHHHHHHHH-HCSSC
T ss_pred             CCCCCc-CCCCcC-chhCCHHHHHHHHH-HhCCC
Confidence            345799 999999 99999999999964 56543

>2ytm_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.22  E-value=0.0024  Score=39.22  Aligned_cols=31  Identities=19%  Similarity=0.364  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ytm_A            8 TGEKPY-KCMECG-KAFGDNSSCTQHQR-LHTGQ   38 (46)
T ss_dssp             SSCCSS-SBTTTT-BCCSSHHHHHHHHH-HHHSC
T ss_pred             CCCCCc-CCCCCC-chhCCHHHHHHHHH-HcCCC
Confidence            456799 999999 99999999999975 46543

>2elm_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.21  E-value=0.0019  Score=38.04  Aligned_cols=29  Identities=17%  Similarity=0.118  Sum_probs=24.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|..|| ..|.+...|..|-.++|.
T Consensus         6 ~~k~~-~C~~C~-k~f~~~~~L~~H~~~~H~   34 (37)
T 2elm_A            6 SGHLY-YCSQCH-YSSITKNCLKRHVIQKHS   34 (37)
T ss_dssp             SSCEE-ECSSSS-CEEECHHHHHHHHHHHTC
T ss_pred             CCcCe-ECCCCC-cccCCHHHHHHHHHHHcc
Confidence            35689 999999 999999999999656774

>2emh_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.21  E-value=0.0018  Score=39.54  Aligned_cols=31  Identities=32%  Similarity=0.555  Sum_probs=26.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emh_A            8 TGERPY-ICTVCG-KAFTDRSNLIKHQK-IHTGE   38 (46)
T ss_dssp             SCCCSE-ECTTTC-CEESSHHHHHHHHH-HHHCS
T ss_pred             CCCCCc-CCCCCC-chhCCHHHHHHHHH-hcCCC
Confidence            456799 999999 99999999999975 67544

>2kvg_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.20  E-value=0.0014  Score=36.00  Aligned_cols=23  Identities=13%  Similarity=0.156  Sum_probs=20.8

Q ss_pred             CCcccccccCCCcccCchHHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      .|| .|..|| ..|.....|..|.+
T Consensus         2 k~~-~C~~C~-k~f~~~~~l~~H~~   24 (27)
T 2kvg_A            2 APY-RCPLCR-AGCPSLASMQAHMR   24 (27)
T ss_dssp             CTE-EETTTT-EEESCHHHHHHHHT
T ss_pred             cCc-CCCCCC-cccCCHHHHHHHHH
Confidence            589 999999 99999999999953

>2eoq_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.20  E-value=0.0018  Score=39.52  Aligned_cols=31  Identities=19%  Similarity=0.346  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eoq_A            8 TGEKPF-KCDICG-KSFCGRSRLNRHSM-VHTAE   38 (46)
T ss_dssp             SSSCSC-CCSSSC-CCCSSHHHHHHHHH-HTTCC
T ss_pred             CCCCCc-CCCcCC-chhCCHHHHHHHHH-HcCCC
Confidence            356799 999999 99999999999954 57543

>2ytn_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.20  E-value=0.0013  Score=40.13  Aligned_cols=31  Identities=29%  Similarity=0.342  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~-~~H~~~   38 (46)
T 2ytn_A            8 TGKKPY-KCNECG-KVFTQNSHLARHR-GIHTGE   38 (46)
T ss_dssp             SCCSSC-BCTTTC-CBCSSHHHHHHHG-GGTSCC
T ss_pred             CCCcCe-ECCCCC-CeeCCHHHHHHHh-hhcCCC
Confidence            457799 999999 9999999999995 456543

>2emg_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.19  E-value=0.0014  Score=40.06  Aligned_cols=30  Identities=23%  Similarity=0.371  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2emg_A            8 TGENPF-ICSECG-KVFTHKTNLIIHQK-IHTG   37 (46)
T ss_dssp             CSCCSC-BCTTTC-CBCSSHHHHHHHHT-TTSC
T ss_pred             CCCCCE-ECCccC-cccCCHHHHHHHHH-HhCC
Confidence            346799 999999 99999999999964 5653

>2ytr_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.19  E-value=0.0016  Score=39.62  Aligned_cols=31  Identities=29%  Similarity=0.400  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..+
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ytr_A            8 TGEKPY-KCNECG-KAFSQTSKLARHQR-IHTGE   38 (46)
T ss_dssp             SSCCTT-CCTTTC-CCCSSHHHHHHHHT-TTTTC
T ss_pred             CCCcCc-CCCCCC-CccCCHHHHHHHHH-hcCCC
Confidence            456799 999999 99999999999964 56543

>2epc_A Zinc finger protein 32; zinc finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yta_A

Probab=96.19  E-value=0.0014  Score=39.05  Aligned_cols=30  Identities=20%  Similarity=0.222  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         7 ~~~~~~-~C~~C~-k~f~~~~~l~~H~~-~H~~   36 (42)
T 2epc_A            7 GGETPY-LCGQCG-KSFTQRGSLAVHQR-SCSQ   36 (42)
T ss_dssp             CSSCCE-ECSSSC-CEESSHHHHHHHHH-HTTC
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHhh-hcCC
Confidence            456799 999999 99999999999964 5643

>2kvf_A Zinc finger and BTB domain-containing protein 32; protein/DNA, metal-binding, transcription; NMR {Mus musculus}

Probab=96.18  E-value=0.0017  Score=35.27  Aligned_cols=23  Identities=26%  Similarity=0.530  Sum_probs=20.9

Q ss_pred             CCcccccccCCCcccCchHHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      .|| .|.+|| ..|.+...|..|.+
T Consensus         2 k~~-~C~~C~-k~f~~~~~l~~H~~   24 (28)
T 2kvf_A            2 RPY-SCSVCG-KRFSLKHQMETHYR   24 (28)
T ss_dssp             CSE-ECSSSC-CEESCHHHHHHHHT
T ss_pred             cCc-cCCCCC-cccCCHHHHHHHHH
Confidence            589 999999 99999999999964

>2yth_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.18  E-value=0.0016  Score=39.89  Aligned_cols=31  Identities=26%  Similarity=0.403  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2yth_A            8 SGEKPF-QCEECG-KRFTQNSHLHSHQ-RVHTGE   38 (46)
T ss_dssp             CCSSSB-CCSSSC-CCBSSHHHHHHHG-GGGTTC
T ss_pred             CCCcCC-CCCCCC-cccCCHHHHHHHH-HhcCCC
Confidence            356799 999999 9999999999995 457544

>2emi_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.18  E-value=0.0013  Score=40.21  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emi_A            8 TGERHY-ECSECG-KAFIQKSTLSMHQR-IHRGE   38 (46)
T ss_dssp             SSCCCE-ECSSSC-CEESSHHHHHHHHG-GGCSC
T ss_pred             CCCCCC-CCCCCC-cccCCHHHHHHHHh-HhCCC
Confidence            346789 999999 99999999999954 56543

>2em6_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.17  E-value=0.0015  Score=40.06  Aligned_cols=31  Identities=23%  Similarity=0.265  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2em6_A            8 MGEKCY-KCDVCG-KEFSQSSHLQTHQ-RVHTGE   38 (46)
T ss_dssp             CCCCCC-BCSSSC-CBCSSHHHHHHHH-TTTSSS
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHH-HHcCCC
Confidence            456799 999999 9999999999995 467543

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=96.14  E-value=0.0016  Score=41.61  Aligned_cols=31  Identities=23%  Similarity=0.341  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|.+.+|..
T Consensus        26 ~~~~~~-~C~~C~-~~f~~~~~l~~H~~~~H~~   56 (60)
T 2adr_A           26 TNEKPY-PCGLCN-RAFTRRDLLIRHAQKIHSG   56 (60)
T ss_dssp             TSSCSE-ECTTTC-CEESSHHHHHHHHTTTSCC
T ss_pred             CCCCCc-cCCCCC-CccCCHHHHHHHHHHHcCC
Confidence            345689 999999 9999999999998888854

>2em4_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.14  E-value=0.0016  Score=39.91  Aligned_cols=31  Identities=26%  Similarity=0.361  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2em4_A            8 TGQRPY-ECIECG-KAFKTKSSLICHRR-SHTGE   38 (46)
T ss_dssp             CCSSSE-ECSSSC-CEESSHHHHHHHHH-HHSSS
T ss_pred             CCCcCc-CCCCCC-CccCCHHHHHHHHH-hcCCC
Confidence            346799 999999 99999999999964 56543

>2eq4_A Zinc finger protein 224; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.13  E-value=0.0019  Score=39.29  Aligned_cols=31  Identities=19%  Similarity=0.203  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eq4_A            8 TGEKLY-NCKECG-KSFSRAPCLLKHER-LHSGE   38 (46)
T ss_dssp             SCCCCC-CBTTTT-BCCSCHHHHHHHHH-HCCSS
T ss_pred             CCCCCe-ECCCCC-CccCchHHHHHHHH-hcCCC
Confidence            456799 999999 99999999999964 56543

>2ep1_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.13  E-value=0.0017  Score=39.50  Aligned_cols=31  Identities=26%  Similarity=0.346  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ep1_A            8 TGEKPY-ECSDCG-KSFIKKSQLHVHQR-IHTGE   38 (46)
T ss_dssp             SSCCSS-CCSSSC-CCCSSHHHHHHHHG-GGSSS
T ss_pred             CCCCCc-CCCCCC-chhCCHHHHHHHHH-HhCCC
Confidence            356799 999999 99999999999975 57544

>2epv_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.13  E-value=0.0014  Score=39.87  Aligned_cols=31  Identities=19%  Similarity=0.184  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.....|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (44)
T 2epv_A            8 SGEKPY-ECNECG-KAFIWKSLLIVHER-THAGV   38 (44)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHHG-GGSSC
T ss_pred             CCCcCe-ECCCCC-cccCchHHHHHHHh-HhcCC
Confidence            346799 999999 99999999999964 56543

>2ytk_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.13  E-value=0.0017  Score=39.68  Aligned_cols=31  Identities=32%  Similarity=0.495  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ytk_A            8 SGEKPY-KCNECG-KVFTQNSHLTNHWR-IHTGE   38 (46)
T ss_dssp             SSSCSE-ECSSSC-CEESSHHHHHHHHH-HHSSS
T ss_pred             CCCCCE-eCCcCC-CccCCHHHHHHHHH-HHCCC
Confidence            456799 999999 99999999999975 56543

>2elo_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.12  E-value=0.003  Score=36.53  Aligned_cols=29  Identities=14%  Similarity=0.179  Sum_probs=24.4

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ...|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         6 ~~k~~-~C~~C~-k~f~~~~~l~~H~~-~h~~   34 (37)
T 2elo_A            6 SGRSY-SCPVCE-KSFSEDRLIKSHIK-TNHP   34 (37)
T ss_dssp             CCCCC-EETTTT-EECSSHHHHHHHHH-HHCS
T ss_pred             CCCCc-CCCCCC-CccCCHHHHHHHHH-HHcC
Confidence            45789 999999 99999999999975 4543

>1yui_A GAGA-factor; complex (DNA-binding protein/DNA), chromatin remodeling, DNA binding protein/DNA complex; HET: DNA; NMR {Drosophila melanogaster} SCOP: g.37.1.1 PDB: 1yuj_A*

Probab=96.12  E-value=0.002  Score=41.14  Aligned_cols=30  Identities=10%  Similarity=0.134  Sum_probs=25.4

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus        21 ~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   50 (54)
T 1yui_A           21 SEQPA-TCPICY-AVIRQSRNLRRHLE-LRHFA   50 (54)
T ss_dssp             SSCCE-ECTTTC-CEESSHHHHHHHHH-HHTTT
T ss_pred             CCCCc-cCCCCC-cccCCHHHHHHHHH-HhccC
Confidence            45789 999999 99999999999975 57544

>2epz_A Zinc finger protein 28 homolog; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.12  E-value=0.0016  Score=39.70  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2epz_A            8 TGEKPF-DCIDCG-KAFSDHIGLNQHRR-IHTGE   38 (46)
T ss_dssp             CCCCSB-CCTTTC-CCBSSHHHHHHHHT-TTTTC
T ss_pred             CCCCCe-ECCCCC-ceeCCHHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999975 56543

>2yrm_A B-cell lymphoma 6 protein; ZF-C2H2, zinc binding, DNA binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.12  E-value=0.0027  Score=38.58  Aligned_cols=31  Identities=10%  Similarity=0.077  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|..|| ..|.+...|..|.+ +|..|
T Consensus         6 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   36 (43)
T 2yrm_A            6 SGNGAF-FCNECD-CRFSEEASLKRHTL-QTHSD   36 (43)
T ss_dssp             SSSCCB-CCSSSC-CCBSSHHHHHHHHH-HHTCT
T ss_pred             CCCCCE-ECCCCC-CeeCChHHHHHHHH-hhCCC
Confidence            346799 999999 99999999999965 46543

>2yu8_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.11  E-value=0.0017  Score=39.67  Aligned_cols=31  Identities=23%  Similarity=0.329  Sum_probs=26.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2yu8_A            8 TGEKPY-KCNECG-KVFTQNSHLARHRR-VHTGG   38 (46)
T ss_dssp             CCCSSE-ECSSSC-CEESSSHHHHHHTH-HHHSC
T ss_pred             CCCCCe-ECCcCC-chhCCHHHHHHHHH-hcCCC
Confidence            457799 999999 99999999999964 67544

>2epu_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.11  E-value=0.001  Score=40.57  Aligned_cols=31  Identities=26%  Similarity=0.377  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~-~~H~~~   38 (45)
T 2epu_A            8 TGQKPF-ECTHCG-KSFRAKGNLVTHQ-RIHTGE   38 (45)
T ss_dssp             CSCCSE-EETTTT-EEESSHHHHHHHH-TTTSSC
T ss_pred             CCCcCc-cCCCCC-CccCChHHHHHHH-HHhCCC
Confidence            346799 999999 9999999999995 467543

>2enh_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.09  E-value=0.0015  Score=40.01  Aligned_cols=31  Identities=23%  Similarity=0.322  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2enh_A            8 TGEKPY-ECDVCR-KAFSHHASLTQHQR-VHSGE   38 (46)
T ss_dssp             CCSSSC-BCTTTC-CBCSSSHHHHHHGG-GSCCS
T ss_pred             CCCCCc-CCCCcC-chhCCHHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999964 56443

>2elz_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.09  E-value=0.0018  Score=39.67  Aligned_cols=30  Identities=20%  Similarity=0.170  Sum_probs=25.3

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~   37 (46)
T 2elz_A            8 SVEKPY-KCEDCG-KGYNRRLNLDMHQR-VHMG   37 (46)
T ss_dssp             CCCSSC-BCSSSC-CBCSSHHHHHHHGG-GGGS
T ss_pred             CCCCCe-eCcccC-chhCCHHHHHHHHH-hcCC
Confidence            456799 999999 99999999999965 5653

>2eq1_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.07  E-value=0.0014  Score=39.98  Aligned_cols=31  Identities=26%  Similarity=0.326  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.....|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eq1_A            8 TGEKPY-KCNECG-KAFRAHSNLTTHQV-IHTGE   38 (46)
T ss_dssp             CCSCCC-CCTTTT-CCCSSHHHHHHHHT-TTCCS
T ss_pred             CCCCCe-ECCcCC-hhhCCHHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999965 56543

>2yto_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.06  E-value=0.0018  Score=39.60  Aligned_cols=31  Identities=23%  Similarity=0.222  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2yto_A            8 TGEKPY-KCSDCG-KAFTRKSGLHIHQQ-SHTGE   38 (46)
T ss_dssp             CSCCCE-ECSSSC-CEESSHHHHHHHHH-HHTCC
T ss_pred             CCCCCE-ECcccC-CccCCHhHHHHHHH-HcCCC
Confidence            456799 999999 99999999999964 46543

>2emm_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.06  E-value=0.0017  Score=39.44  Aligned_cols=30  Identities=20%  Similarity=0.276  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2emm_A            8 TGERPH-KCNECG-KSFIQSAHLIQHQR-IHTG   37 (46)
T ss_dssp             SCCCSE-ECSSSC-CEESSHHHHHHHHH-HHSC
T ss_pred             CCCCCe-eCCCCC-hhhCCHHHHHHHHH-HhCC
Confidence            356799 999999 99999999999964 5653

>2emk_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ysv_A

Probab=96.06  E-value=0.0024  Score=39.06  Aligned_cols=31  Identities=23%  Similarity=0.394  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emk_A            8 TGEKPY-ECKECG-KAFSQTTHLIQHQR-VHTGE   38 (46)
T ss_dssp             SSSCSC-BCSSSC-CBCSCHHHHHHHHH-HHSSC
T ss_pred             CCCCce-ECCCCC-chhCCHHHHHHHHH-HcCCC
Confidence            456799 999999 99999999999975 56543

>2eow_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.05  E-value=0.0017  Score=39.45  Aligned_cols=31  Identities=23%  Similarity=0.239  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eow_A            8 TGEKPY-KCNECG-KAFRARSSLAIHQA-THSGE   38 (46)
T ss_dssp             CCCCCE-ECTTSC-CEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCCe-eccccC-ChhcCHHHHHHHHH-HcCCC
Confidence            356799 999999 99999999999975 56543

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.04  E-value=0.0019  Score=43.42  Aligned_cols=31  Identities=19%  Similarity=0.149  Sum_probs=23.6

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      ..|| .|.+|| ..|.+...|.+|.+..|..++
T Consensus        36 ~~~~-~C~~C~-k~f~~~~~L~~H~~~~H~~~~   66 (78)
T 2d9h_A           36 ALRF-PCEFCG-KRFEKPDSVAAHRSKSHPALL   66 (78)
T ss_dssp             TCCE-ECTTTC-CEESSHHHHHHHHHHTSTTTS
T ss_pred             Cccc-CCCCCC-chhCCHHHHHHHHHHhCCCCC
Confidence            4677 888888 888888888888877776553

>2ytj_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.02  E-value=0.0018  Score=39.53  Aligned_cols=31  Identities=26%  Similarity=0.471  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ytj_A            8 TGEKPY-ICAECG-KAFTIRSNLIKHQK-IHTKQ   38 (46)
T ss_dssp             SSCCSE-ECSSSC-CEESSHHHHHHHHH-HTSCC
T ss_pred             CCCcCe-ECCCCC-hhhCCHHHHHHHHH-HcCCC
Confidence            456799 999999 99999999999974 56543

>2eon_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.02  E-value=0.0016  Score=40.02  Aligned_cols=31  Identities=29%  Similarity=0.442  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eon_A            8 TGEKPY-KCQVCG-KAFRVSSHLVQHHS-VHSGE   38 (46)
T ss_dssp             SSCCSC-BCSSSC-CBCSSHHHHHHHTT-TTTSC
T ss_pred             CCCccc-CCCCCC-cccCcHHHHHHHHH-hcCCC
Confidence            456799 999999 99999999999964 57543

>2em7_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.01  E-value=0.0016  Score=39.71  Aligned_cols=31  Identities=23%  Similarity=0.310  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2em7_A            8 TGEKPY-KCEECG-KGFICRRDLYTHH-MVHTGE   38 (46)
T ss_dssp             SCCCSE-ECSSSC-CEESCHHHHHHHG-GGGTTC
T ss_pred             CCCcCc-cCCCcc-chhCCHHHHHHHH-HHhCCC
Confidence            346799 999999 9999999999995 457543

>2ely_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2ena_A 2en4_A

Probab=96.01  E-value=0.0025  Score=38.99  Aligned_cols=31  Identities=23%  Similarity=0.353  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ely_A            8 TGEKPF-KCVECG-KGFSRRSALNVHHK-LHTGE   38 (46)
T ss_dssp             CCCCSB-CCSSSC-CCBSSTTHHHHHHH-HHSCC
T ss_pred             CCCCCc-ccCccC-cccCCHHHHHHHHH-HcCCC
Confidence            346799 999999 99999999999975 57543

>2eoj_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.01  E-value=0.0014  Score=39.51  Aligned_cols=30  Identities=30%  Similarity=0.390  Sum_probs=24.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (44)
T 2eoj_A            8 TGENPY-ECCECG-KVFSRKDQLVSHQK-THSG   37 (44)
T ss_dssp             SSCCSC-EETTTT-EECSSHHHHHHHHT-TSSS
T ss_pred             CCCcCe-eCCCCC-CccCCHHHHHHHHH-HcCC
Confidence            346799 999999 99999999999964 5653

>2em3_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=96.00  E-value=0.0019  Score=39.41  Aligned_cols=31  Identities=26%  Similarity=0.318  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2em3_A            8 TGEKPY-ECKVCS-KAFTQKAHLAQHQK-THTGE   38 (46)
T ss_dssp             SSCCSE-ECSSSC-CEESSHHHHHHHHH-HHCCC
T ss_pred             CCCcCe-ECCCCC-cccCCHHHHHHHHH-HhCCC
Confidence            456799 999999 99999999999975 46543

>2emx_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.00  E-value=0.0022  Score=38.72  Aligned_cols=31  Identities=16%  Similarity=0.186  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         6 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   36 (44)
T 2emx_A            6 SGEKPF-GCSCCE-KAFSSKSYLLVHQQ-THAEE   36 (44)
T ss_dssp             SSCCCE-ECSSSS-CEESSHHHHHHHHH-HHTSS
T ss_pred             CCCcCc-cCCCCC-cccCCHHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999965 46543

>2eq0_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.99  E-value=0.0013  Score=40.09  Aligned_cols=31  Identities=29%  Similarity=0.344  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2eq0_A            8 TGEKPY-KCHECG-KVFRRNSHLARHQL-IHTGE   38 (46)
T ss_dssp             TCCCCE-ECTTTC-CEESSHHHHHHHHT-TTCCC
T ss_pred             CCCCCe-ECCCCC-chhCCHHHHHHHHH-HcCCC
Confidence            457899 999999 99999999999964 56543

>2el6_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens}

Probab=95.98  E-value=0.0018  Score=39.63  Aligned_cols=31  Identities=23%  Similarity=0.304  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2el6_A            8 AGVNPY-KCSQCE-KSFSGKLRLLVHQ-RMHTRE   38 (46)
T ss_dssp             CCCCSE-ECSSSS-CEESSHHHHHHHH-GGGCCS
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHH-HHcCCC
Confidence            346789 999999 9999999999995 457543

>2eoe_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.96  E-value=0.0019  Score=39.27  Aligned_cols=31  Identities=29%  Similarity=0.358  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|. ++|..|
T Consensus         8 ~~~~~~-~C~~C~-k~F~~~~~L~~H~-~~H~~~   38 (46)
T 2eoe_A            8 TGEKPY-KCNECG-KVFTQNSHLANHQ-RIHTGV   38 (46)
T ss_dssp             CCCCSS-EETTTT-EECSSHHHHHHHH-GGGSCC
T ss_pred             CCCCCe-ECCCcC-hhhCCHHHHHHHH-HHcCCC
Confidence            456799 999999 9999999999996 466543

>2em5_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.95  E-value=0.0015  Score=40.01  Aligned_cols=31  Identities=19%  Similarity=0.153  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|. ++|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2em5_A            8 SSTKSH-QCHECG-RGFTLKSHLNQHQ-RIHTGE   38 (46)
T ss_dssp             CCSCSE-ECSSSC-CEESSHHHHHHHH-TTTSCS
T ss_pred             CCCCCe-ECCcCC-CccCCHHHHHHHH-HHhCCC
Confidence            456799 999999 9999999999996 557543

>2ytd_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.95  E-value=0.0022  Score=39.09  Aligned_cols=31  Identities=23%  Similarity=0.273  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2ytd_A            8 SGEKPY-KCSECG-KAFHRHTHLNEHR-RIHTGY   38 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHH-HHHTCC
T ss_pred             CCCcCe-ECCCCC-CeeCChHHHHHHH-HHcCCC
Confidence            346799 999999 9999999999995 457543

>2eme_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.95  E-value=0.0018  Score=39.33  Aligned_cols=30  Identities=27%  Similarity=0.347  Sum_probs=25.3

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~   37 (46)
T 2eme_A            8 SGEKPY-VCDYCG-KAFGLSAELVRHQ-RIHTG   37 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHH-GGGCC
T ss_pred             CCCCCe-ECCCCC-hhhCCHHHHHHHH-HhcCC
Confidence            356799 999999 9999999999997 46643

>2emy_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.95  E-value=0.0025  Score=38.84  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2emy_A            8 TGENPY-ECHECG-KAFSRKYQLISHQR-THAGE   38 (46)
T ss_dssp             CSSCCE-ECSSSC-CEESSHHHHHHHHH-HHTTS
T ss_pred             CCCcCc-CCCCCC-cccCcHHHHHHHHH-HcCCC
Confidence            356799 999999 99999999999965 46543

>2em8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.95  E-value=0.0027  Score=38.86  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2em8_A            8 SGEKPY-KCVECG-KGYKRRLDLDFHQR-VHTGE   38 (46)
T ss_dssp             CSCCSE-ECSSSC-CEESSHHHHHHHHH-HHHCC
T ss_pred             CCCCCe-ECcccC-chhCCHHHHHHHHH-HHcCC
Confidence            456799 999999 99999999999975 57543

>2eof_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.95  E-value=0.0025  Score=38.25  Aligned_cols=31  Identities=19%  Similarity=0.232  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (44)
T 2eof_A            8 TGEKPY-ECNECQ-KAFNTKSNLMVHQR-THTGE   38 (44)
T ss_dssp             SCCCSE-ECTTTC-CEESCHHHHHHHHH-HTTTS
T ss_pred             CCCCCe-ECCCCC-cccCCHhHHHHHHH-HhCCC
Confidence            346799 999999 99999999999975 56543

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.94  E-value=0.0039  Score=40.43  Aligned_cols=28  Identities=21%  Similarity=0.220  Sum_probs=21.2

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ...|| .|..|| ..|.+...|.+|.+..|
T Consensus        37 ~~~~~-~C~~C~-k~f~~~~~L~~H~~~~H   64 (66)
T 2drp_A           37 NVKVY-PCPFCF-KEFTRKDNMTAHVKIIH   64 (66)
T ss_dssp             SCCCE-ECTTTC-CEESCHHHHHHHHHHHT
T ss_pred             CCcCe-ECCCCC-CccCCHHHHHHHHHHHc
Confidence            45677 888888 78888888888877666

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.94  E-value=0.0036  Score=42.08  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=23.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.++.|..
T Consensus        11 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~~~h~~   41 (77)
T 2ct1_A           11 SGEKPY-ECYICH-ARFTQSGTMKMHILQKHTE   41 (77)
T ss_dssp             SCCCSE-ECTTTC-CEESCHHHHHHHHHHHSSS
T ss_pred             CCCCCe-ECCCcC-chhCCHHHHHHHHHHhcCC
Confidence            345678 888888 8888888888887777753

>2ept_A Zinc finger protein 32; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.93  E-value=0.0013  Score=39.21  Aligned_cols=30  Identities=20%  Similarity=0.165  Sum_probs=24.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..
T Consensus         6 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~   35 (41)
T 2ept_A            6 SGQRVY-ECQECG-KSFRQKGSLTLHE-RIHTG   35 (41)
T ss_dssp             CCCCCE-ECSSSC-CEESSHHHHHHHG-GGCCC
T ss_pred             CCCCCe-ECCCCC-CCcCCHHHHHHHH-HHhCC
Confidence            346799 999999 9999999999995 45643

>2eop_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.93  E-value=0.0026  Score=38.60  Aligned_cols=31  Identities=26%  Similarity=0.276  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eop_A            8 TGEKPH-ECRECG-KSFSFNSQLIVHQR-IHTGE   38 (46)
T ss_dssp             CCCCSC-BCTTTC-CBCSSHHHHHHHHT-TTTTS
T ss_pred             CCCCCe-eCCCCC-chhCCHHHHHHHHH-HcCCC
Confidence            356799 999999 99999999999964 46543

>2ep2_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.93  E-value=0.0019  Score=39.38  Aligned_cols=31  Identities=26%  Similarity=0.385  Sum_probs=25.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ep2_A            8 TGEKPY-ECSICG-KSFTKKSQLHVHQQ-IHTGE   38 (46)
T ss_dssp             SCCCSE-ECSSSC-CEESSHHHHHHHHH-TTSSC
T ss_pred             CCCcCc-CCCCCC-cccCCHHHHHHHHH-HhCCC
Confidence            456799 999999 99999999999975 56543

>2ep0_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.92  E-value=0.0017  Score=39.66  Aligned_cols=31  Identities=26%  Similarity=0.268  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2ep0_A            8 TGEKPY-KCDVCH-KSFRYGSSLTVHQ-RIHTGE   38 (46)
T ss_dssp             TTCCSE-ECSSSC-CEESSHHHHHHHH-TTTSSS
T ss_pred             CCCCCe-eCcccC-cccCChHHHHHHH-HHhCCC
Confidence            456799 999999 9999999999995 467544

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=95.91  E-value=0.0037  Score=39.31  Aligned_cols=27  Identities=19%  Similarity=0.258  Sum_probs=20.0

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ..|| .|.+|| ..|.+...|..|.+.-|
T Consensus        30 ~~~~-~C~~C~-~~f~~~~~l~~H~~~hh   56 (57)
T 3uk3_C           30 EKPY-KCEFCE-YAAAQKTSLRYHLERHH   56 (57)
T ss_dssp             CCCE-ECSSSS-CEESSHHHHHHHHHHHC
T ss_pred             CCCc-CCCCCc-chhCCHHHHHHHHHHhc
Confidence            4577 788887 77777777777776655

>2enc_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.91  E-value=0.002  Score=39.31  Aligned_cols=31  Identities=23%  Similarity=0.359  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2enc_A            8 SGEKPF-KCEECG-KGFYTNSQCYSHQR-SHSGE   38 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHHH-HSCCS
T ss_pred             CCCCCc-CCCCCC-CcCCChHHHHHHHH-HhCCC
Confidence            346799 999999 99999999999964 56543

>2eq2_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.91  E-value=0.0021  Score=39.23  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eq2_A            8 TGGKPY-QCNECG-KAFSQTSKLARHQR-VHTGE   38 (46)
T ss_dssp             SSSCSS-SCCSSC-CCCSSHHHHHHHGG-GGCCC
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHHH-HcCCC
Confidence            456799 999999 99999999999964 56543

>2emp_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.91  E-value=0.0028  Score=38.62  Aligned_cols=31  Identities=26%  Similarity=0.323  Sum_probs=25.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2emp_A            8 TGVKPY-MCNECG-KAFSVYSSLTTHQV-IHTGE   38 (46)
T ss_dssp             SCCCSE-ECSSSC-CEESCHHHHHHHHH-HHHCC
T ss_pred             CCCcCe-ECCCCC-chhCCHHHHHHHHH-HcCCC
Confidence            456799 999999 99999999999975 56543

>2yso_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.89  E-value=0.0023  Score=39.00  Aligned_cols=29  Identities=14%  Similarity=0.134  Sum_probs=24.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|.
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~   36 (46)
T 2yso_A            8 SREKSH-QCRECG-EIFFQYVSLIEHQV-LHM   36 (46)
T ss_dssp             SCCCCE-ECTTTC-CEESSHHHHHHHHH-HHS
T ss_pred             CCCCCE-EccccC-hhhCCHHHHHHHHH-HhC
Confidence            456799 999999 99999999999964 464

>2ep3_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.88  E-value=0.0021  Score=39.23  Aligned_cols=31  Identities=29%  Similarity=0.416  Sum_probs=25.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ep3_A            8 TGEKPY-RCAECG-KAFTDRSNLFTHQK-IHTGE   38 (46)
T ss_dssp             SCCCSE-ECSSSC-CEESSHHHHHHHHT-TTTTS
T ss_pred             CCCCCe-ECCCCC-chhCCHHHHHHHHH-HcCCC
Confidence            346799 999999 99999999999974 56543

>2em9_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2yrh_A

Probab=95.88  E-value=0.0019  Score=39.29  Aligned_cols=31  Identities=23%  Similarity=0.285  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2em9_A            8 TGEKPY-NCKECG-KSFRWASCLLKHQ-RVHSGE   38 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHG-GGGTSC
T ss_pred             CCCcCe-ECCccc-cccCChHHHHHHH-HHhCCC
Confidence            346799 999999 9999999999995 456543

>2ema_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2emc_A

Probab=95.88  E-value=0.0022  Score=39.15  Aligned_cols=31  Identities=29%  Similarity=0.305  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ema_A            8 TGEKRY-KCNECG-KVFSRNSQLSQHQK-IHTGE   38 (46)
T ss_dssp             TTSCCE-ECSSSC-CEESSHHHHHHHHT-GGGCC
T ss_pred             CCCcCc-CCCCCc-chhCCHHHHHHHHH-hcCCC
Confidence            346799 999999 99999999999964 56543

>2ytq_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.86  E-value=0.0024  Score=39.10  Aligned_cols=31  Identities=23%  Similarity=0.325  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2ytq_A            8 AGEKPY-GCSECG-KAFSSKSYLIIHMR-THSGE   38 (46)
T ss_dssp             SCCCSC-BCSSSC-CBCSCHHHHHHHHT-TTCCS
T ss_pred             CCCCCc-CCCccC-hhhCChHHHHHHHH-HhCCC
Confidence            456799 999999 99999999999964 46543

>2eox_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.86  E-value=0.0015  Score=39.51  Aligned_cols=30  Identities=27%  Similarity=0.248  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..
T Consensus         8 ~~~~~~-~C~~C~-k~F~~~~~L~~H~~-~H~~   37 (44)
T 2eox_A            8 TDSKSY-NCNECG-KAFTRIFHLTRHQK-IHTR   37 (44)
T ss_dssp             CCCCCE-EETTTT-EEESSSHHHHTTHH-HHCC
T ss_pred             CCCCCe-ECcccC-cccCCHHHHHHHHH-HhCC
Confidence            356799 999999 99999999999975 4643

>2ytp_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.85  E-value=0.0017  Score=39.72  Aligned_cols=31  Identities=23%  Similarity=0.269  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2ytp_A            8 TGERHY-ECSECG-KAFARKSTLIMHQR-IHTGE   38 (46)
T ss_dssp             CCCCCE-ECSSSC-CEESSHHHHHHHHT-TTSCC
T ss_pred             CCCCCe-ECCcCC-cccCCHHHHHHHHH-HhCCC
Confidence            356799 999999 99999999999964 56543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.83  E-value=0.0047  Score=42.35  Aligned_cols=29  Identities=31%  Similarity=0.525  Sum_probs=25.4

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ..|| .|.+|| ..|.+...|..|.+.+|..
T Consensus        63 ~~~~-~C~~C~-~~f~~~~~L~~H~~~~H~~   91 (95)
T 2yt9_A           63 GKPY-ICQSCG-KGFSRPDHLNGHIKQVHSG   91 (95)
T ss_dssp             CSSB-CCSSSC-CCBSSHHHHHHHHHHTSCC
T ss_pred             CCce-ECCCcc-chhCCHHHHHHHHHHhcCC
Confidence            3689 999999 9999999999999988853

>2em0_A Zinc finger protein 224; DNA-binding, metal-binding, nuclear protein, phosphorylation, polymorphism, repeat, repressor, transcription; NMR {Homo sapiens}

Probab=95.82  E-value=0.0022  Score=39.09  Aligned_cols=31  Identities=13%  Similarity=0.085  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2em0_A            8 MGEKTW-KCRECD-MCFSQASSLRLHQN-VHVGE   38 (46)
T ss_dssp             CCCCCC-CCSSSC-CCCSSHHHHHHHGG-GGSSS
T ss_pred             CCCcCe-ECCCCC-cccCCHHHHHHHHH-HcCCC
Confidence            356799 999999 99999999999964 46543

>2em2_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.82  E-value=0.0025  Score=39.02  Aligned_cols=31  Identities=26%  Similarity=0.397  Sum_probs=25.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2em2_A            8 SGEKPF-KCKECG-KAFRQNIHLASHLR-IHTGE   38 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHHH-HHCCC
T ss_pred             CCCCCE-ECCcCC-chhCCHHHHHHHHH-HhCCC
Confidence            356799 999999 99999999999965 56433

>2ene_A Zinc finger protein 347; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.81  E-value=0.0018  Score=39.54  Aligned_cols=30  Identities=27%  Similarity=0.330  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2ene_A            8 TGEKPY-KCNECG-KVFRHNSYLSRHQR-IHTG   37 (46)
T ss_dssp             CCSSSE-ECSSSC-CEESSHHHHHHHHT-TTCC
T ss_pred             CCCCCe-ECCCCC-chhCChHHHHHHHh-hcCC
Confidence            456799 999999 99999999999964 5653

>2eml_A Zinc finger protein 28 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.79  E-value=0.0025  Score=38.84  Aligned_cols=31  Identities=26%  Similarity=0.370  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2eml_A            8 TGEKPY-ECSVCG-KAFSHRQSLSVHQR-IHSGK   38 (46)
T ss_dssp             SSCCSE-ECSSSC-CEESSHHHHHHHHG-GGSSC
T ss_pred             CCCCCe-eCCCcC-CccCCHHHHHHHHH-HhcCC
Confidence            356799 999999 99999999999964 56543

>2yts_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.79  E-value=0.0019  Score=39.25  Aligned_cols=31  Identities=26%  Similarity=0.401  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..|
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2yts_A            8 TGEKPY-ICNECG-KSFIQKSHLNRHR-RIHTGE   38 (46)
T ss_dssp             CSCCSE-ECSSSC-CEESSHHHHHHHG-GGTSSC
T ss_pred             CCCcCE-ECCCCC-hhhCChHHHHHHH-HhcCCC
Confidence            356799 999999 9999999999996 466543

>2emb_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.78  E-value=0.0017  Score=39.28  Aligned_cols=30  Identities=17%  Similarity=0.161  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (44)
T 2emb_A            8 HTRKRY-ECSKCQ-ATFNLRKHLIQHQK-THAA   37 (44)
T ss_dssp             CCCSSE-ECTTTC-CEESCHHHHHHHGG-GGCC
T ss_pred             CCCCCe-ECCCCC-CccCCHHHHHHHHH-HcCC
Confidence            456799 999999 99999999999964 5643

>2emf_A Zinc finger protein 484; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.78  E-value=0.0017  Score=39.79  Aligned_cols=30  Identities=20%  Similarity=0.200  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~   37 (46)
T 2emf_A            8 TGGKHF-ECTECG-KAFTRKSTLSMHQK-IHTG   37 (46)
T ss_dssp             SSSCCE-ECSSSC-CEESCHHHHHHHGG-GTSC
T ss_pred             CCCCCe-ECCCCC-chhCCHHHHHHHHH-HhCC
Confidence            456799 999999 99999999999975 5643

>2el5_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eol_A 2emv_A 2eqw_A 2en0_A 2epy_A

Probab=95.77  E-value=0.0025  Score=38.04  Aligned_cols=30  Identities=23%  Similarity=0.389  Sum_probs=24.8

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         6 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   35 (42)
T 2el5_A            6 SGENPY-ECSECG-KAFNRKDQLISHQR-THAG   35 (42)
T ss_dssp             SSCCSE-ECSSSC-CEESSHHHHHHHHG-GGCC
T ss_pred             CCCCCc-cCCCcC-hhhCCHHHHHHHHH-hcCC
Confidence            346799 999999 99999999999964 5643

>2yrj_A Zinc finger protein 473; C2H2-type zinc finger, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.72  E-value=0.0022  Score=39.00  Aligned_cols=31  Identities=26%  Similarity=0.350  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   38 (46)
T 2yrj_A            8 TGEKPY-RCGECG-KAFAQKANLTQHQR-IHTGE   38 (46)
T ss_dssp             CCCCCE-ECSSSC-CEESSHHHHHHHHT-TTSSC
T ss_pred             CCCCCe-ECCCCC-CccCCHHHHHHHHH-HcCCC
Confidence            346789 999999 99999999999964 56543

>2ytf_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.70  E-value=0.0025  Score=38.71  Aligned_cols=30  Identities=13%  Similarity=0.197  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|..|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2ytf_A            8 TGEKPF-ECSECQ-KAFNTKSNLIVHQR-THTG   37 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSHHHHHHHHH-TSCS
T ss_pred             CCCCCc-CCCCCC-cccCCHHHHHHHHH-HhCC
Confidence            456799 999999 99999999999964 5643

>2yu5_A Zinc finger protein 473; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.69  E-value=0.0061  Score=36.73  Aligned_cols=30  Identities=20%  Similarity=0.252  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (44)
T 2yu5_A            8 AGENPF-KCSKCD-RVFTQRNYLVQHER-THAR   37 (44)
T ss_dssp             SCCCSE-ECSSSS-CEESSSHHHHHHHH-HCCC
T ss_pred             CCCCCe-ECCCCC-chhCCHHHHHHHhH-hcCC
Confidence            356799 999999 99999999999965 5643

>2en6_A Zinc finger protein 268; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.64  E-value=0.0029  Score=38.55  Aligned_cols=30  Identities=20%  Similarity=0.227  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2en6_A            8 SGEKPY-GCNECG-KTFSQKSILSAHQR-THTG   37 (46)
T ss_dssp             CSSCCE-EETTTT-EEESSHHHHHHHHH-HHSS
T ss_pred             CCCcCe-ECCCCC-cccCchHHHHHHHH-HcCC
Confidence            456799 999999 99999999999976 4643

>1zfd_A SWI5; DNA binding motif, zinc finger DNA binding domain; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=95.63  E-value=0.0043  Score=34.76  Aligned_cols=26  Identities=27%  Similarity=0.333  Sum_probs=22.4

Q ss_pred             CCccccc--ccCCCcccCchHHHHHHHHHhH
Q 046085           30 EPYVLVI--VEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        30 epy~~C~--VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .|| .|.  .|| ..|.+...|..|.+ +|.
T Consensus         2 k~~-~C~~~~C~-k~f~~~~~L~~H~~-~H~   29 (32)
T 1zfd_A            2 RPY-SCDHPGCD-KAFVRNHDLIRHKK-SHQ   29 (32)
T ss_dssp             CSB-CCCCTTCC-CCBSSSHHHHHHHG-GGT
T ss_pred             CCC-cCcCCCCC-CccCCHHHHHHHHH-Hcc
Confidence            489 999  899 99999999999964 464

>2kfq_A FP1; protein, de novo protein; NMR {Synthetic}

Probab=95.60  E-value=0.00028  Score=40.64  Aligned_cols=27  Identities=15%  Similarity=0.129  Sum_probs=22.7

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      || .|..|| ..|.....|.+|. .+|..|
T Consensus         2 p~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   28 (32)
T 2kfq_A            2 AF-ACPACP-KRFMRSDALSKHI-KTAFIV   28 (32)
T ss_dssp             CS-SSSSSC-TTHHHHHTTSSST-TSSSSS
T ss_pred             CC-CCCCCC-cccCCHHHHHHHH-HHHccC
Confidence            89 999999 9999999999995 456543

>2en8_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.59  E-value=0.0026  Score=38.63  Aligned_cols=31  Identities=16%  Similarity=0.048  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..|
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~-~~H~~~   38 (46)
T 2en8_A            8 SGEKSH-TCDECG-KNFCYISALRIHQ-RVHMGE   38 (46)
T ss_dssp             CCCSSE-ECTTTC-CEESSHHHHHHHH-TTTCCS
T ss_pred             CCCCCe-ECCCcC-cccCCHHHHHHHH-HHhCCC
Confidence            456799 999999 9999999999996 456433

>1va1_A Transcription factor SP1; C2H2 type zinc finger, DNA-binding protein; NMR {Homo sapiens}

Probab=95.55  E-value=0.006  Score=35.84  Aligned_cols=30  Identities=17%  Similarity=0.210  Sum_probs=24.5

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.+  || ..|.....|..|.+ +|.-|
T Consensus         5 ~~k~~-~C~~~~C~-k~f~~~~~L~~H~~-~H~~e   36 (37)
T 1va1_A            5 KKKQH-ICHIQGCG-KVYGKTSHLRAHLR-WHTGE   36 (37)
T ss_dssp             SCCCE-ECCSTTCC-CEESCHHHHHHHHH-HHHTT
T ss_pred             CCCCC-CCCCCCCC-CccCCHHHHHHHHH-hcCCC
Confidence            45689 9996  99 99999999999965 56543

>2eos_A B-cell lymphoma 6 protein; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.53  E-value=0.0074  Score=36.02  Aligned_cols=29  Identities=28%  Similarity=0.489  Sum_probs=24.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|.
T Consensus         7 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~   35 (42)
T 2eos_A            7 GGEKPY-PCEICG-TRFRHLQTLKSHLR-IHT   35 (42)
T ss_dssp             SSSCCB-CCSSSC-CCBSSHHHHHHHTT-TTS
T ss_pred             CCCCCE-ECCCCC-CccCCHHHHHHHHH-hcC
Confidence            346799 999999 99999999999964 564

>1fv5_A First zinc finger of U-shaped; CCHC, protein interaction, transcription; NMR {Drosophila melanogaster} SCOP: g.37.1.2 PDB: 1y0j_B 2l6z_B

Probab=95.50  E-value=0.0066  Score=38.26  Aligned_cols=28  Identities=14%  Similarity=0.306  Sum_probs=24.5

Q ss_pred             CccCCCCCcccccccCCCcccCchHHHHHH
Q 046085           24 GVIRPAEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        24 g~i~p~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      |-...+.|| .|..|| ..|.....|.+|-
T Consensus         1 ~~~~gekp~-~C~~Cg-K~F~~~s~L~~H~   28 (36)
T 1fv5_A            1 GSLLKPARF-MCLPCG-IAFSSPSTLEAHQ   28 (36)
T ss_dssp             CCSSSCCCC-EETTTT-EECSCHHHHHHHH
T ss_pred             CCCCCccCe-ECCCCC-CccCCHhHccCcC
Confidence            335667899 999999 9999999999996

>2eoy_A Zinc finger protein 473; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.49  E-value=0.0029  Score=38.66  Aligned_cols=30  Identities=17%  Similarity=0.136  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~   37 (46)
T 2eoy_A            8 QKEKCF-KCNKCE-KTFSCSKYLTQHE-RIHTR   37 (46)
T ss_dssp             CCSCCE-ECSSSC-CEESSSHHHHHHH-TTCCS
T ss_pred             CCCCCE-ECcCCC-CcCCCHHHHHHHH-HHcCC
Confidence            346799 999999 9999999999996 46643

>2epr_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.42  E-value=0.0025  Score=39.59  Aligned_cols=30  Identities=17%  Similarity=0.073  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      .+..|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (48)
T 2epr_A            8 RTRKQV-ACEICG-KIFRDVYHLNRHKL-SHSG   37 (48)
T ss_dssp             CCCCSE-EETTTT-EEESSHHHHHHHGG-GSCS
T ss_pred             CCCcCe-eCCCCC-cccCCHHHHHHHHH-hcCC
Confidence            466799 999999 99999999999954 5643

>2epq_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.41  E-value=0.0047  Score=37.57  Aligned_cols=30  Identities=30%  Similarity=0.529  Sum_probs=24.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.+|| ..|.....|..|.+ +|..|
T Consensus         7 ~~k~~-~C~~C~-k~f~~~~~l~~H~~-~H~~~   36 (45)
T 2epq_A            7 GEKPY-SCPVCG-LRFKRKDRMSYHVR-SHDGS   36 (45)
T ss_dssp             SCCSS-EETTTT-EECSCHHHHHHHHH-HHSCC
T ss_pred             CCCCC-cCCCCC-cccCCHHHHHHHHH-HccCC
Confidence            45699 999999 99999999999975 46543

>2ytg_A ZFP-95, zinc finger protein 95 homolog; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.38  E-value=0.0027  Score=38.68  Aligned_cols=30  Identities=17%  Similarity=0.224  Sum_probs=25.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|. ++|..
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~-~~H~~   37 (46)
T 2ytg_A            8 TGEKPF-KCGECG-KSYNQRVHLTQHQ-RVHTG   37 (46)
T ss_dssp             SSCCSE-ECTTTC-CEESSSHHHHTTG-GGGSS
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHH-HHcCC
Confidence            456799 999999 9999999999995 45653

>2epw_A Zinc finger protein 268; C2H2, zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.37  E-value=0.009  Score=36.15  Aligned_cols=31  Identities=16%  Similarity=0.223  Sum_probs=25.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus         8 ~~~k~~-~C~~C~-k~F~~~~~L~~H~~-~H~~~   38 (46)
T 2epw_A            8 TGEKPC-KCTECG-KAFCWKSQLIMHQR-THVDD   38 (46)
T ss_dssp             CCCCSE-ECSSSC-CEESSSHHHHHHHH-HCCSC
T ss_pred             CCCCCe-eCCCCC-CccCCHHHHHHHHH-HhCCC
Confidence            356799 999999 99999999999975 46543

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=95.35  E-value=0.007  Score=43.01  Aligned_cols=27  Identities=19%  Similarity=0.364  Sum_probs=13.7

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .|| .|.+|| ..|.+...|.+|.+..|.
T Consensus        93 ~~~-~C~~C~-~~f~~~~~l~~H~~~~H~  119 (124)
T 2dlq_A           93 MPY-KCSSCS-QQFMQKKDLQSHMIKLHS  119 (124)
T ss_dssp             CSE-ECSSSC-CEESSHHHHHHHHHHTSS
T ss_pred             CCc-cCCCcc-chhCCHHHHHHHHHHHCC
Confidence            445 555555 555555555555554443

>1x3c_A Zinc finger protein 292; DNA binding, nuclear protein, C2H2-type zinc finger, KIAA0530, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.35  E-value=0.0063  Score=45.43  Aligned_cols=34  Identities=21%  Similarity=0.380  Sum_probs=29.6

Q ss_pred             cCCCCCcccccc--cCCCcccCchHHHHHHHHHhHHHH
Q 046085           26 IRPAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        26 i~p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      .+..-|| .|..  || ..|.....|.+|.+.+|.-|+
T Consensus        22 ~sGEKPY-kC~~~~Cg-KaFsr~s~L~~H~rriHTgEK   57 (73)
T 1x3c_A           22 YSPYRPY-RCVHQGCF-AAFTIQQNLILHYQAVHKSDL   57 (73)
T ss_dssp             SCSSCSC-BCCSTTCC-CBCSSHHHHHHHHHHHSSSCC
T ss_pred             ccCCCCe-ECCCCCcC-hhHcCHHHHHHHhhhhCCCCC
Confidence            4567899 9975  99 999999999999999998654

>2drp_A Protein (tramtrack DNA-binding domain); protein-DNA complex, double helix, transcription/DNA complex; HET: DNA; 2.80A {Drosophila melanogaster} SCOP: g.37.1.1 g.37.1.1

Probab=95.34  E-value=0.0051  Score=39.87  Aligned_cols=28  Identities=14%  Similarity=0.153  Sum_probs=25.5

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ...|| .|.+|| ..|.+...|..|.+..|
T Consensus         7 ~~k~~-~C~~C~-k~f~~~~~l~~H~~~~H   34 (66)
T 2drp_A            7 GEHTY-RCKVCS-RVYTHISNFCRHYVTSH   34 (66)
T ss_dssp             ETTEE-ECTTTC-CEESSHHHHHHHHHHHS
T ss_pred             CCcce-ECCCCc-chhCCHHHHHHHHHHHc
Confidence            45799 999999 99999999999998877

>2el4_A Zinc finger protein 268; alternative splicing, DNA-binding, metal-binding, nuclear protein, repeat, transcription, transcription regulation; NMR {Homo sapiens} SCOP: k.12.1.1 PDB: 2eog_A 2em1_A 2emw_A 2eok_A

Probab=95.33  E-value=0.0033  Score=38.16  Aligned_cols=30  Identities=17%  Similarity=0.173  Sum_probs=25.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|. .+|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~-~~H~~   37 (46)
T 2el4_A            8 TGVKPY-GCSQCA-KTFSLKSQLIVHQ-RSHTG   37 (46)
T ss_dssp             CCCCSE-ECSSSS-CEESSHHHHHHHG-GGSSS
T ss_pred             CCCCce-ECCCCC-chhCCHHHHHHHH-HHhCC
Confidence            346789 999999 9999999999996 45643

>2ct1_A Transcriptional repressor CTCF; CCCTC-BINDING factor, zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=95.29  E-value=0.0072  Score=40.56  Aligned_cols=28  Identities=11%  Similarity=0.093  Sum_probs=25.6

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      .|| .|.+|| ..|.+...|.+|.+..|.-
T Consensus        44 ~~~-~C~~C~-~~f~~~~~L~~H~~~~H~~   71 (77)
T 2ct1_A           44 AKF-HCPHCD-TVIARKSDLGVHLRKQHSY   71 (77)
T ss_dssp             SSE-ECSSSS-CEESSHHHHHHHHHHTSCC
T ss_pred             Ccc-CCCCCC-CccCCHHHHHHHHHHhCCC
Confidence            689 999999 9999999999999988854

>2en1_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.26  E-value=0.0034  Score=38.26  Aligned_cols=30  Identities=23%  Similarity=0.381  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|. .+|..
T Consensus         8 ~~~~~~-~C~~C~-k~f~~~~~L~~H~-~~H~~   37 (46)
T 2en1_A            8 SGEKPF-KCEECG-KRFTQNSQLHSHQ-RVHTG   37 (46)
T ss_dssp             CCCCSE-EETTTT-EEESSHHHHHHHG-GGGSC
T ss_pred             CCCCCe-eCCCCC-cccCCHHHHHHHH-HHcCC
Confidence            456789 999999 9999999999996 45643

>3uk3_C Zinc finger protein 217; transcription factor, DNA binding, DNA-metal BI protein complex; 2.10A {Homo sapiens}

Probab=95.20  E-value=0.007  Score=37.98  Aligned_cols=28  Identities=18%  Similarity=0.082  Sum_probs=22.0

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ..|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         2 ~~~~-~C~~C~-~~f~~~~~l~~H~~-~h~~   29 (57)
T 3uk3_C            2 SSSR-ECSYCG-KFFRSNYYLNIHLR-THTG   29 (57)
T ss_dssp             ---C-BCTTTC-CBCSCHHHHHHHHH-HHHC
T ss_pred             CCCc-cCCCCc-chhCChHHHHHHHH-HcCC
Confidence            3589 999999 99999999999976 4643

>2eq3_A Zinc finger protein 347; C2H2, zinc finger domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.19  E-value=0.0077  Score=36.47  Aligned_cols=30  Identities=23%  Similarity=0.268  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2eq3_A            8 TGEKPY-ECNQCG-KAFSVRSSLTTHQA-IHTG   37 (46)
T ss_dssp             CCCCSS-EETTTT-EECSSHHHHHHHHT-TSCC
T ss_pred             CCCCCe-ECCCCC-hhhCCHHHHHHHHH-HhCC
Confidence            346799 999999 99999999999964 5643

>2ytb_A Zinc finger protein 32; zinc-finger domain, C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=95.18  E-value=0.0085  Score=35.49  Aligned_cols=29  Identities=21%  Similarity=0.381  Sum_probs=24.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|.
T Consensus         7 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~   35 (42)
T 2ytb_A            7 GGEKPY-RCDQCG-KAFSQKGSLIVHIR-VHT   35 (42)
T ss_dssp             CSCCSB-CCTTTT-CCBSSHHHHHTTGG-GTS
T ss_pred             CCCCCe-eCCCcc-chhCCHHHHHHHHH-HhC
Confidence            346799 999999 99999999999964 554

>1bhi_A CRE-BP1, ATF-2; CRE binding protein, transcriptional activation domain, Zn finger, DNA-binding regulatory protein; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=95.14  E-value=0.011  Score=34.45  Aligned_cols=29  Identities=31%  Similarity=0.449  Sum_probs=24.2

Q ss_pred             CCCccccc--ccCCCcccCchHHHHHHHHHhHHH
Q 046085           29 AEPYVLVI--VEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        29 ~epy~~C~--VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ..|| .|.  .|| ..|.....|..|.+ +|..|
T Consensus         4 ~k~~-~C~~~~C~-k~f~~~~~L~~H~~-~H~~~   34 (38)
T 1bhi_A            4 DKPF-LCTAPGCG-QRFTNEDHLAVHKH-KHEMT   34 (38)
T ss_dssp             CCCE-ECCCTTTC-CEESSHHHHHHHHH-HHHTT
T ss_pred             Ccce-ECCCCCCC-cccCCHHHHHHHHH-HhCCC
Confidence            5689 999  599 99999999999974 57544

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=95.11  E-value=0.007  Score=40.94  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=11.6

Q ss_pred             CCcccccccCCCcccCchHHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      .|| .|.+|| ..|.+...|..|.+
T Consensus        33 ~~~-~C~~C~-~~f~~~~~l~~H~~   55 (90)
T 1a1h_A           33 KPF-QCRICM-RNFSRSDHLTTHIR   55 (90)
T ss_dssp             CCE-ECTTTC-CEESCHHHHHHHHH
T ss_pred             CCc-cCCCCC-cccCCHHHHHHHHH
Confidence            345 555555 55555555555543

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=95.07  E-value=0.0076  Score=41.26  Aligned_cols=22  Identities=14%  Similarity=0.178  Sum_probs=11.5

Q ss_pred             CCcccccccCCCcccCchHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      .|| .|.+|| ..|.+...|.+|.
T Consensus        31 kp~-~C~~C~-k~F~~~~~L~~H~   52 (60)
T 4gzn_C           31 RPR-SCPECG-KCFRDQSEVNRHL   52 (60)
T ss_dssp             CCE-ECTTTC-CEESSHHHHHHHG
T ss_pred             cCe-ECCCCC-CCcCCHHHHHHHh
Confidence            455 555555 5555555555553

>2lv2_A Insulinoma-associated protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.99  E-value=0.01  Score=43.19  Aligned_cols=32  Identities=22%  Similarity=0.238  Sum_probs=27.4

Q ss_pred             CccCCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           24 GVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        24 g~i~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ++-.|.+|| .|.+|| ..|.+...|.+|.+ +|.
T Consensus        21 ~~~~~~~~h-~C~~Cg-k~F~~~~~L~~H~~-~H~   52 (85)
T 2lv2_A           21 GLSASAECH-LCPVCG-ESFASKGAQERHLR-LLH   52 (85)
T ss_dssp             SSCCCCTTE-ECTTSC-CEESSHHHHHHHHH-TTS
T ss_pred             CCCCCCCCE-ECCCCC-CCcCcHHHHhhhhh-hcc
Confidence            455688999 999999 99999999999976 454

>2epp_A POZ-, at HOOK-, and zinc finger-containing protein 1; C2H2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=94.96  E-value=0.018  Score=40.56  Aligned_cols=35  Identities=17%  Similarity=0.097  Sum_probs=28.9

Q ss_pred             cCccCCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           23 KGVIRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        23 ~g~i~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .|-.+...|| .|..|| ..|.....|.+|.+ +|..+
T Consensus         5 ~~~~~~ekpy-~C~~Cg-K~F~~~s~L~~H~r-~Htg~   39 (66)
T 2epp_A            5 SSGLREAGIL-PCGLCG-KVFTDANRLRQHEA-QHGVT   39 (66)
T ss_dssp             SCSCCCCCCC-CCTTTC-CCCSCHHHHHHHHH-HHTTT
T ss_pred             CCCCCCccCc-CCCCCC-CccCCHHHHHhhhh-hhCCC
Confidence            3556778999 999999 99999999999975 46543

>2ysp_A Zinc finger protein 224; ZF-C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=94.90  E-value=0.009  Score=36.30  Aligned_cols=30  Identities=23%  Similarity=0.214  Sum_probs=25.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         8 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~   37 (46)
T 2ysp_A            8 TGEKPY-KCEKCG-KGYNSKFNLDMHQK-VHTG   37 (46)
T ss_dssp             SSCCSE-EETTTT-EEESCHHHHHHHHT-TSCS
T ss_pred             CCCCCe-ECCCCC-CccCCHHHHHHHHH-hhCC
Confidence            356799 999999 99999999999964 4643

>4gzn_C ZFP-57, zinc finger protein 57; transcription-DNA complex; HET: DNA 5CM; 0.99A {Mus musculus}

Probab=94.89  E-value=0.0045  Score=42.40  Aligned_cols=30  Identities=17%  Similarity=0.256  Sum_probs=26.3

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      +-|| .|.+|| ..|.+...|..|-+ +|..|+
T Consensus         2 EKpy-~C~~C~-k~F~~~~~L~~H~~-~Ht~ek   31 (60)
T 4gzn_C            2 ERPF-FCNFCG-KTYRDASGLSRHRR-AHLGYR   31 (60)
T ss_dssp             CCCE-ECTTTC-CEESSHHHHHHHHH-HHHTCC
T ss_pred             CCCc-cCCCCC-CEeCCHHHHHHHHH-HhCCCc
Confidence            4599 999999 99999999999974 687765

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.87  E-value=0.015  Score=38.26  Aligned_cols=28  Identities=18%  Similarity=0.320  Sum_probs=19.7

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ...|| .|.+|| ..|.+...|..|.+.-|
T Consensus        34 ~~~~~-~C~~C~-~~f~~~~~L~~H~~~h~   61 (70)
T 1x5w_A           34 TDRPF-KCNYCS-FDTKQPSNLSKHMKKFH   61 (70)
T ss_dssp             CSCSE-ECSSSS-CEESSHHHHHHHHHHHH
T ss_pred             CCCCE-eCCCCC-CccCCHHHHHHHHHHHh
Confidence            44567 788887 77777777877765433

>3jy6_A Transcriptional regulator, LACI family; NYSGXRC, PSI-II, protein S initiative, structural genomics; 1.97A {Lactobacillus brevis}

Probab=94.86  E-value=0.12  Score=41.58  Aligned_cols=68  Identities=10%  Similarity=0.040  Sum_probs=53.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .....+.+.+..+++|.|++.+.+.  ...+..+.+.|+.+|+||..
T Consensus        27 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~--~~~~~~l~~~~iPvV~i~~~   94 (276)
T 3jy6_A           27 KGISSILESRGYIGVLFDANADI---EREKTLLRAIGSRGFDGLILQSFSN--PQTVQEILHQQMPVVSVDRE   94 (276)
T ss_dssp             HHHHHHHHTTTCEEEEEECTTCH---HHHHHHHHHHHTTTCSEEEEESSCC--HHHHHHHHTTSSCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEecCCc--HHHHHHHHHCCCCEEEEecc
Confidence            46778889999998866554443   2334445555578999999999888  88999999999999999876

>1x5w_A Zinc finger protein 64, isoforms 1; ZNF338, nuclear protein, DNA binding, transcription, C2H2 type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.73  E-value=0.013  Score=38.63  Aligned_cols=30  Identities=13%  Similarity=0.004  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      .+..|| .|.+|| ..|.+...|..|.+. |..
T Consensus         5 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~~-H~~   34 (70)
T 1x5w_A            5 SSGHPE-KCSECS-YSCSSKAALRIHERI-HCT   34 (70)
T ss_dssp             CCCCSE-ECSSSS-CEESSHHHHHHHHGG-GCC
T ss_pred             CCCCCe-ECCCCC-cccCCHHHHHHHHHH-cCC
Confidence            356799 999999 999999999999864 643

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=94.72  E-value=0.0088  Score=39.84  Aligned_cols=23  Identities=17%  Similarity=0.164  Sum_probs=12.8

Q ss_pred             CCCcccccccCCCcccCchHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      ..|| .|..|| ..|.+...|..|.
T Consensus        15 ~~~~-~C~~C~-k~f~~~~~l~~H~   37 (74)
T 2lce_A           15 DKPY-KCDRCQ-ASFRYKGNLASHK   37 (74)
T ss_dssp             CCSB-CCTTSS-CCBSCHHHHHHHH
T ss_pred             CCCe-ECCCCC-ceeCCHHHHHHHH
Confidence            3455 555555 5555555555554

>1sp2_A SP1F2; zinc finger, transcription activation; NMR {Homo sapiens} SCOP: g.37.1.1 PDB: 1va2_A

Probab=94.72  E-value=0.014  Score=32.46  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             Cccccc--ccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVI--VEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~--VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|.  .|| ..|.+...|..|.+ +|.
T Consensus         2 p~-~C~~~~C~-k~f~~~~~L~~H~~-~H~   28 (31)
T 1sp2_A            2 PF-MCTWSYCG-KRFTRSDELQRHKR-THT   28 (31)
T ss_dssp             CC-BCCSTTCC-CBCSSHHHHHHHHT-TTS
T ss_pred             Cc-CCcCCCCC-cccCCHhHHHHHHH-Hhc
Confidence            89 998  999 99999999999964 454

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=94.70  E-value=0.018  Score=36.06  Aligned_cols=25  Identities=24%  Similarity=0.426  Sum_probs=20.8

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|.+|| ..|.+...|..|.+. |.
T Consensus         1 p~-~C~~C~-~~f~~~~~l~~H~~~-h~   25 (57)
T 1bbo_A            1 KY-ICEECG-IRXKKPSMLKKHIRT-HT   25 (57)
T ss_dssp             CC-BCTTTC-CBCSSHHHHHHHHHH-TS
T ss_pred             CC-cCCCCc-CcCCCHHHHHHHHHh-cC
Confidence            78 899999 999999999999754 54

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.69  E-value=0.015  Score=38.91  Aligned_cols=30  Identities=23%  Similarity=0.307  Sum_probs=24.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ....|| .|.+|| ..|.+...|..|.+..|.
T Consensus        11 ~~~k~~-~C~~C~-~~f~~~~~l~~H~~~~~~   40 (86)
T 1x6h_A           11 TGEKPY-ACSHCD-KTFRQKQLLDMHFKRYHD   40 (86)
T ss_dssp             CCCCCE-ECSSSS-CEESSHHHHHHHHHHTTC
T ss_pred             cCCCCC-cCCCCC-CccCCHHHHHHHHHHhcC
Confidence            345788 899998 888888889888877664

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=94.54  E-value=0.015  Score=41.20  Aligned_cols=28  Identities=7%  Similarity=0.005  Sum_probs=15.3

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ..|| .|.+|| ..|.+...|.+|.+.+|.
T Consensus        67 ~~~~-~C~~C~-~~f~~~~~L~~H~~~~H~   94 (107)
T 1wjp_A           67 YKKL-TCLECM-RTFKSSFSIWRHQVEVHN   94 (107)
T ss_dssp             TGGG-EEGGGT-EECSSHHHHHHHHHHTSC
T ss_pred             CCCc-cCcccc-chhCCHHHHHHHHHHHcC
Confidence            3455 555555 555555555555555553

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.49  E-value=0.023  Score=40.43  Aligned_cols=29  Identities=10%  Similarity=0.086  Sum_probs=25.5

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+|| ..|.+...|.+|.+..|.
T Consensus        77 ~~~~~-~C~~C~-k~f~~~~~L~~H~~~hh~  105 (115)
T 2dmi_A           77 AQKVL-KCMYCG-HSFESLQDLSVHMIKTKH  105 (115)
T ss_dssp             CCSSC-BCSSSC-CBCSSHHHHHHHHHHTTT
T ss_pred             CCcce-ECCCCC-CccCCHHHHHHHHHHhCC
Confidence            45799 999999 999999999999887664

>2eln_A Zinc finger protein 406; ZFAT zinc finger 1, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.46  E-value=0.025  Score=35.63  Aligned_cols=29  Identities=17%  Similarity=0.111  Sum_probs=24.3

Q ss_pred             CCCCCcccccc--cCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHe   58 (230)
                      +..-|| .|..  || ..|.+...|.+|.+ +|.
T Consensus         5 ~gekp~-~C~~~~C~-k~F~~~~~L~~H~r-~Ht   35 (38)
T 2eln_A            5 SSGILL-KCPTDGCD-YSTPDKYKLQAHLK-VHT   35 (38)
T ss_dssp             SCCCCE-ECSSSSCC-CEESCHHHHHHHHH-HHS
T ss_pred             CCCCCC-CCCCCCCC-CccCCHHHHHHHHH-hcC
Confidence            456799 9987  99 99999999999964 564

>2adr_A ADR1; transcription regulation, zinc finger,; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1 g.37.1.1

Probab=94.37  E-value=0.019  Score=36.39  Aligned_cols=26  Identities=15%  Similarity=0.363  Sum_probs=22.8

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      || .|..|| ..|.+...|..|.+. |..
T Consensus         2 ~~-~C~~C~-~~f~~~~~l~~H~~~-h~~   27 (60)
T 2adr_A            2 SF-VCEVCT-RAFARQEHLKRHYRS-HTN   27 (60)
T ss_dssp             CB-CCTTTC-CCBSCHHHHHHHHHT-TTS
T ss_pred             cC-cCCCCc-cccCCHHHHHHHHHH-hCC
Confidence            89 999999 999999999999764 643

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.34  E-value=0.024  Score=41.02  Aligned_cols=28  Identities=18%  Similarity=0.127  Sum_probs=20.6

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ..|| .|.+|| ..|.+...|.+|...+|.
T Consensus        60 ~k~~-~C~~Cg-k~F~~~~~L~~H~~~~H~   87 (96)
T 2ctd_A           60 QEMF-TCHHCG-KQLRSLAGMKYHVMANHN   87 (96)
T ss_dssp             CCCC-CCSSSC-CCCSSHHHHHHHHHHHTC
T ss_pred             CCCe-ECCCCC-CeeCCHHHHHHHhHHhcC
Confidence            4677 788888 777777788877666664

>3l6u_A ABC-type sugar transport system periplasmic compo; structural genomics, nysgrc, target 11006S, PSI-2, protein S initiative; 1.90A {Exiguobacterium sibiricum}

Probab=94.30  E-value=0.17  Score=40.55  Aligned_cols=71  Identities=7%  Similarity=-0.032  Sum_probs=51.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC-cchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD-SDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD-SDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+..+....+.   .-.....+.|-.+++|.|++.+.+ +++..+++.+.+.|+.+|++|...
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   99 (293)
T 3l6u_A           28 NAFKAEAKANKYEALVATSQNSR---ISEREQILEFVHLKVDAIFITTLDDVYIGSAIEEAKKAGIPVFAIDRMI   99 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEECSSCH---HHHHHHHHHHHHTTCSEEEEECSCTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHcCCCEEEecCCC
Confidence            46778888899988866544333   222333333446899999998754 455689999999999999998764

>3o74_A Fructose transport system repressor FRUR; dual transcriptional regulator, DNA, transcription; 2.00A {Pseudomonas putida} PDB: 3o75_A*

Probab=94.28  E-value=0.1  Score=41.36  Aligned_cols=71  Identities=13%  Similarity=-0.046  Sum_probs=52.6

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+.......+.   .-...+.+.+.++++|.|++.+.++.-...++.+++.|+.+|+++...
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~~   92 (272)
T 3o74_A           22 KQLEQGARARGYQLLIASSDDQP---DSERQLQQLFRARRCDALFVASCLPPEDDSYRELQDKGLPVIAIDRRL   92 (272)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCCCCSSCCHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHHcCCCEEEEecCccccHHHHHHHHHcCCCEEEEccCC
Confidence            46777888899988866544333   333444455557899999999877545778889999999999999763

>3gbv_A Putative LACI-family transcriptional regulator; NYSGXRC, PSI-II, 11231J, structur genomics, protein structure initiative; 2.20A {Bacteroides fragilis}

Probab=94.24  E-value=0.082  Score=42.40  Aligned_cols=74  Identities=4%  Similarity=-0.158  Sum_probs=51.5

Q ss_pred             Cchhhhhhhh-cEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRV-WFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRA-Gv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++.. |+.|....-.....|..-...+.+.+..+++|.|++++-+++ +..+++.+.+.|+.+|+|+...
T Consensus        29 ~gi~~~a~~~~g~~~~~~~~~~~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~~  104 (304)
T 3gbv_A           29 KGIREAVTTYSDFNISANITHYDPYDYNSFVATSQAVIEEQPDGVMFAPTVPQYTKGFTDALNELGIPYIYIDSQI  104 (304)
T ss_dssp             HHHHHHHHHTGGGCEEEEEEEECSSCHHHHHHHHHHHHTTCCSEEEECCSSGGGTHHHHHHHHHHTCCEEEESSCC
T ss_pred             HHHHHHHHHHHhCCeEEEEEcCCCCCHHHHHHHHHHHHhcCCCEEEECCCChHHHHHHHHHHHHCCCeEEEEeCCC
Confidence            4677777877 777775432111122233334444455789999999988774 7889999999999999999763

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=94.17  E-value=0.04  Score=38.89  Aligned_cols=30  Identities=20%  Similarity=0.262  Sum_probs=17.7

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ...|| .|.+|| ..|.+...|.+|.+.-|..
T Consensus        62 ~~~~~-~C~~C~-~~f~~~~~l~~H~~~~~~~   91 (110)
T 2csh_A           62 GIKPY-ECNICA-KRFMWRDSFHRHVTSCTKS   91 (110)
T ss_dssp             CCCCE-ECSSSC-CEESCHHHHHHHHHHHHHH
T ss_pred             CCCCe-eCCCCc-chhcCHHHHHHHHHHcccc
Confidence            34456 666666 6666666666666555443

>1bbo_A Human enhancer-binding protein MBP-1; DNA-binding protein; HET: ABA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 PDB: 3znf_A 4znf_A

Probab=94.15  E-value=0.018  Score=36.04  Aligned_cols=26  Identities=19%  Similarity=0.364  Sum_probs=22.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ....|| .|.+|| ..|.+...|..|.+
T Consensus        25 ~~~~~~-~C~~C~-~~f~~~~~l~~H~~   50 (57)
T 1bbo_A           25 TDVRPY-HCTYCN-FSFKTKGNLTKHMK   50 (57)
T ss_dssp             SSCCCE-ECSSSS-CEESSHHHHHHHHH
T ss_pred             CCCCCc-cCCCCC-chhcCHHHHHHHHH
Confidence            345789 999999 99999999999965

>3m9w_A D-xylose-binding periplasmic protein; xylose binding protein, conformational changes, SUGA protein; 2.15A {Escherichia coli} PDB: 3m9x_A* 3ma0_A*

Probab=94.08  E-value=0.21  Score=40.81  Aligned_cols=71  Identities=18%  Similarity=0.081  Sum_probs=52.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+.......+.   .....+.+.|-.+++|.|++.+.+++ +..+++.+++.|+.+|+++...
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   93 (313)
T 3m9w_A           22 DIFVKKAESLGAKVFVQSANGNE---ETQMSQIENMINRGVDVLVIIPYNGQVLSNVVKEAKQEGIKVLAYDRMI   93 (313)
T ss_dssp             HHHHHHHHHTSCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEEECSSTTSCHHHHHHHHTTTCEEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCeEEEECCcC
Confidence            46788889999988865443222   33344444454689999999987654 5889999999999999998763

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.07  E-value=0.018  Score=40.96  Aligned_cols=26  Identities=12%  Similarity=-0.017  Sum_probs=17.9

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHh
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      .|| .|.+|| ..|.+...|.+|.+.-|
T Consensus        53 ~~~-~C~~C~-k~F~~~~~L~~H~~~h~   78 (98)
T 2gqj_A           53 DAL-KCQHCR-KQFKSKAGLNYHTMAEH   78 (98)
T ss_dssp             HHH-SCSSSC-CCCSCHHHHHHHHHHHS
T ss_pred             CCE-ECCCCC-CccCCHHHHHHHHHHHc
Confidence            367 777777 77777777777765444

>2ab3_A ZNF29; zinc finger protein, beta BETA alpha, RREIIB-TR, RNA binding protein; NMR {Escherichia coli} SCOP: k.12.1.1 PDB: 2ab7_A

Probab=93.99  E-value=0.016  Score=31.10  Aligned_cols=22  Identities=27%  Similarity=0.283  Sum_probs=20.1

Q ss_pred             Cccccc--ccCCCcccCchHHHHHHH
Q 046085           31 PYVLVI--VEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        31 py~~C~--VCGdrkf~t~~kL~kHFk   54 (230)
                      || .|.  .|| ..|.+...|..|.+
T Consensus         2 ~~-~C~~~~C~-k~f~~~~~l~~H~~   25 (29)
T 2ab3_A            2 VY-VCHFENCG-RSFNDRRKLNRHKK   25 (29)
T ss_dssp             CE-EECSTTTC-EEESSHHHHHHHHG
T ss_pred             CC-CCcCCcCc-CccCCHHHHHHHHH
Confidence            78 999  999 99999999999954

>3tb6_A Arabinose metabolism transcriptional repressor; transcription regulation, arabinose binding, DNA binding Pro; HET: ARB; 2.21A {Bacillus subtilis}

Probab=93.98  E-value=0.23  Score=39.63  Aligned_cols=70  Identities=6%  Similarity=-0.071  Sum_probs=52.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc----chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS----DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS----DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.........   .-.....+.|..+++|.|++.+.++    .-..+++.+++.|..+|+++..
T Consensus        35 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~~~~iPvV~~~~~  108 (298)
T 3tb6_A           35 RGIESYLSEQGYSMLLTSTNNNP---DNERRGLENLLSQHIDGLIVEPTKSALQTPNIGYYLNLEKNGIPFAMINAS  108 (298)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTCCSEEEECCSSTTSCCTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHHCCCCEEEEecccccccCCcHHHHHHHHhcCCCEEEEecC
Confidence            37888899999999866544332   3334444445478999999998765    3457889999999999999876

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.95  E-value=0.029  Score=37.15  Aligned_cols=24  Identities=29%  Similarity=0.519  Sum_probs=15.9

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|.+|| ..|.+...|.+|.+
T Consensus        40 ~~~~-~C~~C~-~~f~~~~~L~~H~~   63 (72)
T 1x6e_A           40 EKPY-KCLECG-KAFSQNSGLINHQR   63 (72)
T ss_dssp             SCCE-ECSSSC-CEESSHHHHHHHHH
T ss_pred             CCCe-ECCCCC-cccCCHHHHHHHHH
Confidence            4566 677777 66777777776654

>3l49_A ABC sugar (ribose) transporter, periplasmic substrate-binding subunit; sugar binding/transporter, structural genomics, PSI; HET: UNL; 2.30A {Rhodobacter sphaeroides}

Probab=93.86  E-value=0.17  Score=40.49  Aligned_cols=71  Identities=4%  Similarity=-0.081  Sum_probs=52.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+.......+.   .-...+.+.+-.+++|.|++.+.++ .....++.+.+.|+.+|+++...
T Consensus        25 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   96 (291)
T 3l49_A           25 QAQIAEIERLGGTAIALDAGRND---QTQVSQIQTLIAQKPDAIIEQLGNLDVLNPWLQKINDAGIPLFTVDTAT   96 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHHCCSEEEEESSCHHHHHHHHHHHHHTTCCEEEESCCC
T ss_pred             HHHHHHHHHcCCEEEEEcCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChhhhHHHHHHHHHCCCcEEEecCCC
Confidence            46778888999999866443333   2233344444468999999998774 57789999999999999998764

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.83  E-value=0.011  Score=39.59  Aligned_cols=23  Identities=22%  Similarity=0.385  Sum_probs=13.5

Q ss_pred             CCCcccccccCCCcccCchHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      ..|| .|.+|| ..|.+...|.+|.
T Consensus        44 ~~~~-~C~~C~-~~f~~~~~L~~H~   66 (77)
T 2cot_A           44 EKPY-KCDECG-KAFIQRSHLIGHH   66 (77)
T ss_dssp             SCSE-ECSSSC-CEESSHHHHHHHG
T ss_pred             CcCe-eCCCCC-CccCCHHHHHHHH
Confidence            3455 666666 6666666666664

>3ksm_A ABC-type sugar transport system, periplasmic COMP; periplasmic component, PSI- 11023L, structural genomics, protein structure initiative; HET: BDR; 1.90A {Hahella chejuensis}

Probab=93.80  E-value=0.18  Score=39.86  Aligned_cols=73  Identities=10%  Similarity=0.017  Sum_probs=51.6

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcC-cceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRR-FGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~-vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      -|+..+++..|+.+..+... ...|.+-...+.+.+-.++ +|.|++.+-++ .....++.+.+.|+.+|+++...
T Consensus        20 ~gi~~~~~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~~vdgii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~~   94 (276)
T 3ksm_A           20 LGAQKAADEAGVTLLHRSTK-DDGDIAGQIQILSYHLSQAPPDALILAPNSAEDLTPSVAQYRARNIPVLVVDSDL   94 (276)
T ss_dssp             HHHHHHHHHHTCEEEECCCS-STTCHHHHHHHHHHHHHHSCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEECCC-CCCCHHHHHHHHHHHHHhCCCCEEEEeCCCHHHHHHHHHHHHHCCCcEEEEecCC
Confidence            36778888899999866421 1122233333444444678 99999998654 57789999999999999998763

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=93.79  E-value=0.042  Score=37.75  Aligned_cols=25  Identities=28%  Similarity=0.341  Sum_probs=21.6

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ...|| .|.+|| ..|.+...|.+|.+
T Consensus        72 ~~~~~-~C~~C~-~~f~~~~~l~~H~~   96 (100)
T 2ebt_A           72 GAKPF-QCGVCN-RSFSRSDHLALHMK   96 (100)
T ss_dssp             SCCSC-BCSSSC-CBCSSHHHHHHHHH
T ss_pred             CCCCe-ECCCCc-CccCCHHHHHHHHH
Confidence            45689 999999 99999999999965

>2gqj_A Zinc finger protein KIAA1196; ZF-C2H2 like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.78  E-value=0.061  Score=38.09  Aligned_cols=30  Identities=7%  Similarity=-0.041  Sum_probs=25.4

Q ss_pred             CCCCCcccccccCCCccc-CchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLY-NNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~-t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|. +...|..|.+. |..
T Consensus        20 ~~~~~~-~C~~C~-k~f~~~~~~L~~H~~~-h~~   50 (98)
T 2gqj_A           20 HERGEA-VCPTCN-VVTRKTLVGLKKHMEV-CQK   50 (98)
T ss_dssp             TTTSCC-CCTTTC-CCCSSCSHHHHHHHHH-HHH
T ss_pred             ccCCCc-CCCCCC-CChhhhHHHHHHHHHH-HcC
Confidence            456899 999999 9999 99999999865 543

>3h75_A Periplasmic sugar-binding domain protein; protein structure initiative II (PSI II), sugar binding PROT alpha/beta fold; 1.60A {Pseudomonas fluorescens pf-5}

Probab=93.75  E-value=0.21  Score=41.75  Aligned_cols=72  Identities=7%  Similarity=0.018  Sum_probs=52.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhh-cCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDK-RRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~-r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+..+....+.+.  -...+.+++.. .++|.|+++++++....+++.+.+.|+.+|+|+...
T Consensus        24 ~g~~~~a~~~g~~~~~~~~~~~~~~--~~~~i~~~i~~~~~vDgiIi~~~~~~~~~~~~~~~~~giPvV~~~~~~   96 (350)
T 3h75_A           24 QFMQAAARDLGLDLRILYAERDPQN--TLQQARELFQGRDKPDYLMLVNEQYVAPQILRLSQGSGIKLFIVNSPL   96 (350)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCHHH--HHHHHHHHHHSSSCCSEEEEECCSSHHHHHHHHHTTSCCEEEEEESCC
T ss_pred             HHHHHHHHHcCCeEEEEECCCCHHH--HHHHHHHHHhcCCCCCEEEEeCchhhHHHHHHHHHhCCCcEEEEcCCC
Confidence            3677888888999886644333321  12334444532 599999999877778889999999999999999873

>1x6f_A Zinc finger protein 462; zinc finger domain, KIAA1803, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1

Probab=93.72  E-value=0.042  Score=39.75  Aligned_cols=33  Identities=21%  Similarity=0.298  Sum_probs=28.3

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQK   62 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr~   62 (230)
                      ....|| .|.+|| ..|.....|..|.+ +|..|+.
T Consensus        21 ~~~kpy-~C~~C~-k~F~~~~~L~~H~~-~Ht~ekp   53 (88)
T 1x6f_A           21 LQNSTY-QCKHCD-SKLQSTAELTSHLN-IHNEEFQ   53 (88)
T ss_dssp             CCCSCE-ECSSSC-CEESSHHHHHHHHH-HHHHHHH
T ss_pred             CCCCCC-cCCCCC-CEeCCHHHHHHHHH-HhCCCCC
Confidence            456799 999999 99999999999975 6877754

>2d9h_A Zinc finger protein 692; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=93.67  E-value=0.039  Score=36.87  Aligned_cols=30  Identities=13%  Similarity=0.094  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|..
T Consensus         3 ~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~h~~   32 (78)
T 2d9h_A            3 SGSSGL-QCEICG-FTCRQKASLNWHQR-KHAE   32 (78)
T ss_dssp             CSCCCE-ECSSSC-CEESSHHHHHHHHH-HHHH
T ss_pred             CCCcCe-ECCCCC-CeeCCHHHHHHHHH-Hhhc
Confidence            356799 999999 99999999999975 4543

>2lce_A B-cell lymphoma 6 protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens}

Probab=93.64  E-value=0.051  Score=36.03  Aligned_cols=32  Identities=25%  Similarity=0.388  Sum_probs=26.4

Q ss_pred             cCCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           26 IRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        26 i~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      -....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus        40 H~~~~~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   71 (74)
T 2lce_A           40 HTGEKPY-RCNICG-AQFNRPANLKTHTR-IHSGE   71 (74)
T ss_dssp             HCCCCSE-ECTTTC-CEESCHHHHHHHHH-HHCCS
T ss_pred             cCCCCCE-ECCCCC-chhCCHHHHHHHHH-hcCCC
Confidence            4567899 999999 99999999999975 56433

>3k4h_A Putative transcriptional regulator; structural genomics, protein structure INI NEW YORK structural genomix research consortium; HET: MAL; 2.80A {Bacillus cytotoxicus nvh 391-98}

Probab=93.63  E-value=0.18  Score=40.41  Aligned_cols=69  Identities=10%  Similarity=0.090  Sum_probs=52.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+.|+.+.........   .....+.+.+..+++|.|++++.+.+ ...++.+.+.|+.+|+|+..
T Consensus        33 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~  101 (292)
T 3k4h_A           33 RGISSFAHVEGYALYMSTGETEE---EIFNGVVKMVQGRQIGGIILLYSREN-DRIIQYLHEQNFPFVLIGKP  101 (292)
T ss_dssp             HHHHHHHHHTTCEEEECCCCSHH---HHHHHHHHHHHTTCCCEEEESCCBTT-CHHHHHHHHTTCCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHHHHHCCCCEEEECCC
Confidence            47788899999999866544333   34455566666789999999875543 37888999999999999876

>2fn9_A Ribose ABC transporter, periplasmic ribose-bindin; RBP, ribose binding protein, periplasmic binding protein, thermophilic proteins; 1.40A {Thermotoga maritima} PDB: 2fn8_A*

Probab=93.63  E-value=0.3  Score=39.23  Aligned_cols=70  Identities=6%  Similarity=0.037  Sum_probs=48.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+......-+   ......+.+.+...++|.|++.+.++ ++..+++.+++.|+.+|+++..
T Consensus        22 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~~~~~~~iPvV~~~~~   92 (290)
T 2fn9_A           22 ETAKQRAEQLGYEATIFDSQND---TAKESAHFDAIIAAGYDAIIFNPTDADGSIANVKRAKEAGIPVFCVDRG   92 (290)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTC---HHHHHHHHHHHHHTTCSEEEECCSCTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCC---HHHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecC
Confidence            3666777888888775443222   22233333444468999999987654 4667899999999999999875

>8abp_A L-arabinose-binding protein; binding proteins; HET: GLA GAL; 1.49A {Escherichia coli} SCOP: c.93.1.1 PDB: 7abp_A* 6abp_A* 1abe_A* 1abf_A* 5abp_A* 1bap_A* 1apb_A* 9abp_A* 2wrz_A

Probab=93.62  E-value=0.28  Score=39.59  Aligned_cols=68  Identities=13%  Similarity=-0.072  Sum_probs=49.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGY  175 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd  175 (230)
                      .|+..+++..|+.+..+.. .   |..-.....+.|-.+++|.|++.+.+++ ...+++.+.+.|+.+|+++.
T Consensus        22 ~gi~~~a~~~g~~~~~~~~-~---~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~   90 (306)
T 8abp_A           22 KFADKAGKDLGFEVIKIAV-P---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD   90 (306)
T ss_dssp             HHHHHHHHHHTEEEEEEEC-C---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHHHcCCEEEEeCC-C---CHHHHHHHHHHHHHcCCCEEEEeCCCchhhHHHHHHHHHCCCcEEEeCC
Confidence            3677788888999876544 2   2233334444444689999999987765 45679999999999999994

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=93.60  E-value=0.025  Score=37.22  Aligned_cols=24  Identities=17%  Similarity=0.351  Sum_probs=19.3

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|.+|| ..|.+...|..|.+
T Consensus        47 ~~~~-~C~~C~-~~f~~~~~l~~H~~   70 (73)
T 1f2i_G           47 QKPF-QCRICM-RNFSRSDHLTTHIR   70 (73)
T ss_dssp             CCCE-ECTTTC-CEESCHHHHHHHHT
T ss_pred             CCCe-ECCCCC-chhCCHHHHHHHHH
Confidence            4678 888888 88888888888854

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=93.59  E-value=0.027  Score=39.42  Aligned_cols=23  Identities=17%  Similarity=0.234  Sum_probs=12.7

Q ss_pred             CCCcccccccCCCcccCchHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      ..|| .|.+|| ..|.+...|.+|.
T Consensus        71 ~~~~-~C~~C~-~~f~~~~~L~~H~   93 (106)
T 2ee8_A           71 EKPF-KCQECG-KGFCQSRTLAVHK   93 (106)
T ss_dssp             CCTT-SCSSSC-CCCSSHHHHHHHH
T ss_pred             CCCe-ECCCcC-CcccCHHHHHHHH
Confidence            3455 555555 5555555555554

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.57  E-value=0.033  Score=41.70  Aligned_cols=29  Identities=10%  Similarity=0.052  Sum_probs=20.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      +...|| .|..|| ..|.+...|..|.+.+|
T Consensus        14 ~gekpy-~C~~Cg-k~F~~~~~L~~H~r~~H   42 (102)
T 2ghf_A           14 KVEGGY-ECKYCT-FQTPDLNMFTFHVDSEH   42 (102)
T ss_dssp             CCCSSE-ECSSCS-CEESCHHHHHHHHHHHC
T ss_pred             CCCcCc-CCCCCC-CccCCHHHHHHHHHhhC
Confidence            345677 777777 77777777777776666

>1x6e_A Zinc finger protein 24; ZNF24, KOX17, ZNF191, zscan3, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.55  E-value=0.038  Score=36.63  Aligned_cols=30  Identities=23%  Similarity=0.372  Sum_probs=25.5

Q ss_pred             cCCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           26 IRPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        26 i~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      -....|| .|.+|| ..|.+...|..|.+ +|.
T Consensus         9 H~~~k~~-~C~~C~-k~f~~~~~L~~H~~-~h~   38 (72)
T 1x6e_A            9 HSGEKPY-GCVECG-KAFSRSSILVQHQR-VHT   38 (72)
T ss_dssp             TTTCCCE-ECSSSC-CEESSHHHHHHHHH-GGG
T ss_pred             cCCCCCc-cCCCCC-CccCCHHHHHHHHH-hcC
Confidence            3567899 999999 99999999999976 454

>3huu_A Transcription regulator like protein; PSI-II, NYSGXRC, LAC I, STR genomics, protein structure initiative; 1.95A {Staphylococcus haemolyticus}

Probab=93.53  E-value=0.18  Score=41.21  Aligned_cols=69  Identities=7%  Similarity=-0.031  Sum_probs=52.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .....+.+.|..+++|.|++++.+.+ ...+..+.+.|+.+|+||..
T Consensus        47 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~  115 (305)
T 3huu_A           47 NGINQACNVRGYSTRMTVSENSG---DLYHEVKTMIQSKSVDGFILLYSLKD-DPIEHLLNEFKVPYLIVGKS  115 (305)
T ss_dssp             HHHHHHHHHHTCEEEECCCSSHH---HHHHHHHHHHHTTCCSEEEESSCBTT-CHHHHHHHHTTCCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHhCCCCEEEEeCCcCC-cHHHHHHHHcCCCEEEECCC
Confidence            47888999999999866544332   34455666666799999999875543 27788899999999999976

>1gud_A ALBP, D-allose-binding periplasmic protein; periplasmic binding protein, X-RAY crystallography, hinge bending, conformational change; 1.7A {Escherichia coli} SCOP: c.93.1.1 PDB: 1gub_A 1rpj_A*

Probab=93.52  E-value=0.2  Score=40.72  Aligned_cols=70  Identities=10%  Similarity=0.012  Sum_probs=49.4

Q ss_pred             CchhhhhhhhcEEEEEcc--ccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMS--DKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~--dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+....  ..-   |......+.+.|..+++|.|++++.+++ +...++.+++.|+.+|+++..
T Consensus        21 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   93 (288)
T 1gud_A           21 KGIEDEAKTLGVSVDIFASPSEG---DFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK   93 (288)
T ss_dssp             HHHHHHHHHHTCCEEEEECSSTT---CHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCC---CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEECCC
Confidence            477888999998887543  211   2223333444444689999999876654 567889999999999999865

>3g1w_A Sugar ABC transporter; sugar-binding protein, bacillus halod target 11229F, transport protein, structural genomics; 2.02A {Bacillus halodurans c-125}

Probab=93.51  E-value=0.29  Score=39.59  Aligned_cols=72  Identities=6%  Similarity=-0.047  Sum_probs=51.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+..+.+..  .|..-...+.+.+-.+++|.|++.+-++ .+...++.+.+.|+.+|+++...
T Consensus        24 ~gi~~~a~~~g~~~~~~~~~~--~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~~   96 (305)
T 3g1w_A           24 KGFEDAAQALNVTVEYRGAAQ--YDIQEQITVLEQAIAKNPAGIAISAIDPVELTDTINKAVDAGIPIVLFDSGA   96 (305)
T ss_dssp             HHHHHHHHHHTCEEEEEECSS--SCHHHHHHHHHHHHHHCCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEeCCCc--CCHHHHHHHHHHHHHhCCCEEEEcCCCHHHHHHHHHHHHHCCCcEEEECCCC
Confidence            477888899999998633211  1223333444444468999999987655 47889999999999999999763

>1x6h_A Transcriptional repressor CTCF; zinc finger protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.51  E-value=0.029  Score=37.50  Aligned_cols=26  Identities=8%  Similarity=0.198  Sum_probs=23.0

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQI   56 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkql   56 (230)
                      +.|| .|.+|| ..|.+...|..|.+.-
T Consensus        45 ~~~~-~C~~C~-~~f~~~~~L~~H~~~h   70 (86)
T 1x6h_A           45 PAAF-VCSKCG-KTFTRRNTMARHADNC   70 (86)
T ss_dssp             CCCE-ECSSSC-CEESCHHHHHHHHHHC
T ss_pred             Ccce-ECCCCC-ChhCCHHHHHHHHHHc
Confidence            4689 999999 9999999999998643

>3uug_A Multiple sugar-binding periplasmic receptor CHVE; periplasmic binding protein, sugar-binding protein, sugar binding protein; HET: BDP; 1.75A {Agrobacterium tumefaciens} PDB: 3urm_A*

Probab=93.46  E-value=0.3  Score=40.01  Aligned_cols=71  Identities=15%  Similarity=0.091  Sum_probs=52.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+.......+.   .-.....+.|-.+++|.|++.+-++ .+...++.+.+.|+.+|+|+...
T Consensus        23 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~i~~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~giPvV~~~~~~   94 (330)
T 3uug_A           23 NNIVKQLQEAGYKTDLQYADDDI---PNQLSQIENMVTKGVKVLVIASIDGTTLSDVLKQAGEQGIKVIAYDRLI   94 (330)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHHTCSEEEECCSSGGGGHHHHHHHHHTTCEEEEESSCC
T ss_pred             HHHHHHHHHcCCEEEEeeCCCCH---HHHHHHHHHHHHcCCCEEEEEcCCchhHHHHHHHHHHCCCCEEEECCCC
Confidence            46778888899988865533222   3333334444468999999998776 57899999999999999998764

>2ghf_A ZHX1, zinc fingers and homeoboxes protein 1; C2H2 zinc fingers, 4-stranded parallel/anti-parallel beta- sheet, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=93.42  E-value=0.018  Score=43.14  Aligned_cols=32  Identities=19%  Similarity=0.221  Sum_probs=27.6

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      ...|| .|..|| ..|.+...|..|-..+|..|+
T Consensus        47 ~ekpf-~C~~Cg-k~F~~~~~L~~H~~r~Htgek   78 (102)
T 2ghf_A           47 LNSSY-VCVECN-FLTKRYDALSEHNLKYHPGEE   78 (102)
T ss_dssp             CSCCE-EETTTT-EEESSTHHHHTHHHHTSTTCC
T ss_pred             CCCCc-CCCCCC-cccCCHHHHHHHHHHhcCCCC
Confidence            45689 999999 999999999999767887654

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=93.41  E-value=0.039  Score=36.41  Aligned_cols=25  Identities=20%  Similarity=0.292  Sum_probs=18.5

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ...|| .|.+|| ..|.+...|.+|.+
T Consensus        54 ~~~~~-~C~~C~-~~f~~~~~l~~H~~   78 (82)
T 2kmk_A           54 GEKPH-KCQVCG-KAFSQSSNLITHSR   78 (82)
T ss_dssp             TCCCE-ECTTTS-CEESSHHHHHHHHH
T ss_pred             CCCCC-cCCCcc-hhhCChHHHHHHHH
Confidence            34577 788888 78888888887764

>2dri_A D-ribose-binding protein; sugar transport; HET: RIP; 1.60A {Escherichia coli} SCOP: c.93.1.1 PDB: 1urp_A* 1ba2_A 1dbp_A* 1drj_A* 1drk_A* 2gx6_A*

Probab=93.39  E-value=0.29  Score=39.24  Aligned_cols=70  Identities=10%  Similarity=-0.004  Sum_probs=49.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .-...+.+.+..+++|.|++.+.+++ ....++.+++.|+.+|+++..
T Consensus        21 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~i~~~   91 (271)
T 2dri_A           21 DGAQKEADKLGYNLVVLDSQNNP---AKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ   91 (271)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCH---HHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCcEEEEeCCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCcEEEecCC
Confidence            47778888999888754322222   22333444454689999999876544 457889999999999999875

>3hcw_A Maltose operon transcriptional repressor; RNA-binding, PSI-2, NYSGXRC, STRU genomics, protein structure initiative; 2.20A {Staphylococcus aureus subsp}

Probab=93.26  E-value=0.29  Score=39.90  Aligned_cols=70  Identities=10%  Similarity=0.037  Sum_probs=51.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+.......   |......+.+.+..+++|.|++++.+.+ ..+++.+.+.|+.+|+||...
T Consensus        32 ~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~~  101 (295)
T 3hcw_A           32 LGISETCNQHGYGTQTTVSNN---MNDLMDEVYKMIKQRMVDAFILLYSKEN-DPIKQMLIDESMPFIVIGKPT  101 (295)
T ss_dssp             HHHHHHHHTTTCEEEECCCCS---HHHHHHHHHHHHHTTCCSEEEESCCCTT-CHHHHHHHHTTCCEEEESCCC
T ss_pred             HHHHHHHHHCCCEEEEEcCCC---ChHHHHHHHHHHHhCCcCEEEEcCcccC-hHHHHHHHhCCCCEEEECCCC
Confidence            467888999999988655433   2344455666666799999999865543 367888899999999999763

>3dbi_A Sugar-binding transcriptional regulator, LACI FAM; structural genomics, sugar-binding transcriptional regulator structure initiative, PSI-2; HET: MSE; 2.45A {Escherichia coli K12}

Probab=93.24  E-value=0.37  Score=40.09  Aligned_cols=70  Identities=7%  Similarity=-0.105  Sum_probs=52.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .....+.+.|..+++|.|++.+.+.+-..+...+.+.++.+|+++..
T Consensus        83 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~  152 (338)
T 3dbi_A           83 FHAARMAEEKGRQLLLADGKHSA---EEERQAIQYLLDLRCDAIMIYPRFLSVDEIDDIIDAHSQPIMVLNRR  152 (338)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTSH---HHHHHHHHHHHHTTCSEEEECCSSSCHHHHHHHHHHCSSCEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHhCCCCEEEEeCCCCChHHHHHHHHcCCCCEEEEcCC
Confidence            47788999999998866543332   22333445555789999999998877777888999999999999876

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=93.23  E-value=0.051  Score=37.21  Aligned_cols=29  Identities=17%  Similarity=0.245  Sum_probs=24.6

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+|| ..|.+...|..|.+.-|.
T Consensus        28 ~~~~~-~C~~C~-k~f~~~~~L~~H~~~h~~   56 (88)
T 1llm_C           28 GEKPF-ACDICG-RKFARSDERKRHRDIQHI   56 (88)
T ss_dssp             CCCCE-ECTTTC-CEESSHHHHHHHHHHHTH
T ss_pred             CCCCc-cCCCCC-CccCCHHHHHHHHHHhCC
Confidence            35689 999999 999999999999887774

>3sho_A Transcriptional regulator, RPIR family; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 1.80A {Sphaerobacter thermophilus}

Probab=92.96  E-value=0.43  Score=37.05  Aligned_cols=74  Identities=20%  Similarity=0.090  Sum_probs=50.9

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|..|..+++.+..  .  . .....+  ..=|+++++|-.   .+...+++.|+++|+++|+|-+.....|.
T Consensus        57 ~~~~l~~~g~~~~~~~~~~~~--~--~-~~~~~~--~~~d~~i~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~  129 (187)
T 3sho_A           57 LGHGLNSLGIRTTVLTEGGST--L--T-ITLANL--RPTDLMIGVSVWRYLRDTVAALAGAAERGVPTMALTDSSVSPPA  129 (187)
T ss_dssp             HHHHHHHTTCCEEEECCCTHH--H--H-HHHHTC--CTTEEEEEECCSSCCHHHHHHHHHHHHTTCCEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCCEEEecCCchh--H--H-HHHhcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEeCCCCCcch
Confidence            456678999999988732221  1  1 111122  123677777653   35567789999999999999998667899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       130 ~~ad  133 (187)
T 3sho_A          130 RIAD  133 (187)
T ss_dssp             HHCS
T ss_pred             hhCc
Confidence            9999

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.95  E-value=0.04  Score=36.50  Aligned_cols=28  Identities=18%  Similarity=0.268  Sum_probs=21.2

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+  || ..|.+...|..|.+ +|.
T Consensus        35 ~~~~~-~C~~~~C~-k~f~~~~~L~~H~~-~H~   64 (79)
T 2dlk_A           35 HQKSF-SCPEPACG-KSFNFKKHLKEHMK-LHS   64 (79)
T ss_dssp             SCCCE-ECSCTTTC-CEESSHHHHHHHHH-HHH
T ss_pred             CCCCe-ECCCCCCc-CccCCHHHHHHHHH-HhC
Confidence            35678 8887  88 88888888888875 564

>1llm_C Chimera of ZIF23-GCN4; dimerization, DNA recognition, leucine zipper, X-RAY crystallography, structure-based design, zinc fingers; 1.50A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 PDB: 1xf7_A

Probab=92.88  E-value=0.034  Score=38.10  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=24.0

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .|| .|.+|| ..|.+...|..|.+ +|..+
T Consensus         2 k~~-~C~~C~-k~f~~~~~L~~H~~-~H~~~   29 (88)
T 1llm_C            2 KPF-QCRICM-RNFSRSDHLTTHIR-THTGE   29 (88)
T ss_dssp             CCE-ECTTTC-CEESCHHHHHHHHH-HHHCC
T ss_pred             CCC-cCCCCC-CccCCHHHHHHHHH-HcCCC
Confidence            589 999999 99999999999976 46543

>2fep_A Catabolite control protein A; CCPA, transcriptional regulator; HET: SEP; 2.45A {Bacillus subtilis} PDB: 2nzu_G* 1sxh_A 1sxi_A 1sxg_A* 2nzv_G* 2oen_G*

Probab=92.84  E-value=0.37  Score=39.14  Aligned_cols=69  Identities=9%  Similarity=-0.004  Sum_probs=47.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .-...+.+.|..+++|.|++.+.+.+ ...++.+.+.|+.+|+++..
T Consensus        36 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~  104 (289)
T 2fep_A           36 RGIEDIATMYKYNIILSNSDQNM---EKELHLLNTMLGKQVDGIVFMGGNIT-DEHVAEFKRSPVPIVLAASV  104 (289)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHHHSSSCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHHhcCCCEEEEccc
Confidence            46777888888887754332222   22333444444689999999886544 56788888999999999875

>2vk2_A YTFQ, ABC transporter periplasmic-binding protein YTFQ; transport protein, galactofuranose; HET: GZL; 1.20A {Escherichia coli}

Probab=92.81  E-value=0.29  Score=40.02  Aligned_cols=70  Identities=7%  Similarity=-0.053  Sum_probs=49.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .-...+.+.|..+++|.|++.+.+.+ +..+++.+.+.|+.+|+++..
T Consensus        22 ~gi~~~a~~~g~~l~~~~~~~~~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   92 (306)
T 2vk2_A           22 NVAKSEAEKRGITLKIADGQQKQ---ENQIKAVRSFVAQGVDAIFIAPVVATGWEPVLKEAKDAEIPVFLLDRS   92 (306)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCH---HHHHHHHHHHHHHTCSEEEECCSSSSSCHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEeCCCCCH---HHHHHHHHHHHHcCCCEEEEeCCChhhHHHHHHHHHHCCCCEEEecCC
Confidence            46677888889888755432222   22233334444689999999887654 568899999999999999875

>1wjp_A Zinc finger protein 295; ZF-C2H2 domain, zinc binding, nucleic acid binding, KIAA1227 protein, structural genomics; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.79  E-value=0.085  Score=37.20  Aligned_cols=28  Identities=14%  Similarity=0.008  Sum_probs=22.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ....|| .|.+|| ..|.+...|..|.+. |
T Consensus        12 ~~~~~~-~C~~C~-~~f~~~~~l~~H~~~-H   39 (107)
T 1wjp_A           12 ENKEVY-QCRLCN-AKLSSLLEQGSHERL-C   39 (107)
T ss_dssp             CCCCCC-BCTTTC-CBCSSHHHHHHHHHH-H
T ss_pred             CCCcCe-ECCCCC-CccCCHHHHHHHHHH-C
Confidence            456788 899999 888888889888764 6

>1tjy_A Sugar transport protein; protein-ligand complex, signaling protein; HET: PAV; 1.30A {Salmonella typhimurium} SCOP: c.93.1.1 PDB: 1tm2_A 3t95_A* 3ejw_A*

Probab=92.67  E-value=0.43  Score=39.65  Aligned_cols=70  Identities=13%  Similarity=0.008  Sum_probs=49.5

Q ss_pred             CchhhhhhhhcEEEEEcc-ccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMS-DKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~-dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      -|+..+++..|+.+.... ...   |.+......+.|-.++++.|++++-|++ ...+++.|+++|+.+|.++..
T Consensus        23 ~g~~~~~~~~g~~~~~~~~~~~---d~~~q~~~i~~li~~~vdgiii~~~~~~~~~~~~~~a~~~gipvV~~d~~   94 (316)
T 1tjy_A           23 NGAQEAGKALGIDVTYDGPTEP---SVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSD   94 (316)
T ss_dssp             HHHHHHHHHHTCEEEECCCSSC---CHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC
T ss_pred             HHHHHHHHHhCCEEEEECCCCC---CHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCcCEEEEecCC
Confidence            466677888898887542 222   2233333344444689999999887765 578999999999999999754

>1ncs_A Peptide M30F, transcriptional factor SWI5; DNA binding motif, transcription regulation, zinc-finger; NMR {Saccharomyces cerevisiae} SCOP: g.37.1.1

Probab=92.61  E-value=0.025  Score=35.13  Aligned_cols=30  Identities=10%  Similarity=0.214  Sum_probs=24.3

Q ss_pred             CCCCccccc--ccCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVI--VEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~--VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.  .|| ..|.....|..|.+ +|..|
T Consensus        15 ~~k~~-~C~~~~C~-k~F~~~~~L~~H~~-~H~~e   46 (47)
T 1ncs_A           15 PDKTF-ECLFPGCT-KTFKRRYNIRSHIQ-THLED   46 (47)
T ss_dssp             TTTEE-ECCCTTCC-CEECSSSSHHHHHH-HHTTT
T ss_pred             CCCCe-ECCCCCCC-CccCCHHHHHHHHH-HccCC
Confidence            46789 995  799 99999999999965 46543

>3d8u_A PURR transcriptional regulator; APC91343.1, vibrio parahaem RIMD 2210633, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.88A {Vibrio parahaemolyticus}

Probab=92.56  E-value=0.37  Score=38.26  Aligned_cols=69  Identities=7%  Similarity=-0.048  Sum_probs=47.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .....+.+.+..+++|.|++.+.+.+ ..+++.+.+.|+.+|+++..
T Consensus        23 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~~~iPvV~~~~~   91 (275)
T 3d8u_A           23 PSFQQALNKAGYQLLLGYSDYSI---EQEEKLLSTFLESRPAGVVLFGSEHS-QRTHQLLEASNTPVLEIAEL   91 (275)
T ss_dssp             HHHHHHHHHTSCEECCEECTTCH---HHHHHHHHHHHTSCCCCEEEESSCCC-HHHHHHHHHHTCCEEEESSS
T ss_pred             HHHHHHHHHCCCEEEEEcCCCCH---HHHHHHHHHHHhcCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEEeec
Confidence            46777888889887644322222   22333444444689999999886654 46788888899999999865

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=92.55  E-value=0.068  Score=38.84  Aligned_cols=24  Identities=8%  Similarity=0.163  Sum_probs=16.2

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|.+|| ..|.+...|..|.+
T Consensus        72 ~~~~-~C~~C~-k~f~~~~~l~~H~~   95 (129)
T 2wbt_A           72 ISQF-VCPLCL-MPFSSSVSLKQHIR   95 (129)
T ss_dssp             HCSE-ECTTTC-CEESSHHHHHHHHH
T ss_pred             CCCe-ECCCCC-cccCCHhHHHHHHH
Confidence            4566 777777 77777777777764

>2rgy_A Transcriptional regulator, LACI family; 11011J, NYSGXRC, transctiptional regulator, SUG binding protein, structural genomics, PSI-2; 2.05A {Burkholderia phymatum}

Probab=92.54  E-value=0.33  Score=39.31  Aligned_cols=69  Identities=19%  Similarity=0.055  Sum_probs=47.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHH---HHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNY---MVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~---m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .-...   +.+.+..+++|.|++.+.+.+ ...+..+++.|+.+|+++..
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~   99 (290)
T 2rgy_A           28 KQTDLELRAVHRHVVVATGCGES---TPREQALEAVRFLIGRDCDGVVVISHDLH-DEDLDELHRMHPKMVFLNRA   99 (290)
T ss_dssp             HHHHHHHHHTTCEEEEECCCSSS---CHHHHHHHHHHHHHHTTCSEEEECCSSSC-HHHHHHHHHHCSSEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCch---hhhhhHHHHHHHHHhcCccEEEEecCCCC-HHHHHHHhhcCCCEEEEccc
Confidence            46777888889887754332221   11122   333344689999999887665 56788888899999999875

>2h3h_A Sugar ABC transporter, periplasmic sugar-binding protein; glucose binding protein, periplasmic binding protein, GBP; HET: BGC; 1.70A {Thermotoga maritima} PDB: 2qvc_A* 3c6q_B*

Probab=92.46  E-value=0.35  Score=39.67  Aligned_cols=70  Identities=9%  Similarity=0.004  Sum_probs=48.0

Q ss_pred             CchhhhhhhhcEEEEEcc-ccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMS-DKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~-dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+. +..   |.+-...+.+.|-.+++|.|++.+.++ .+...++.+.+.|+.+|+++..
T Consensus        20 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (313)
T 2h3h_A           20 QGVKAAGKALGVDTKFFVPQKE---DINAQLQMLESFIAEGVNGIAIAPSDPTAVIPTIKKALEMGIPVVTLDTD   91 (313)
T ss_dssp             HHHHHHHHHHTCEEEEECCSSS---CHHHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEECCCCC---CHHHHHHHHHHHHHcCCCEEEEeCCChHHHHHHHHHHHHCCCeEEEeCCC
Confidence            366677778898887543 222   222223333333368999999987655 4678899999999999999875

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=92.44  E-value=0.051  Score=41.67  Aligned_cols=28  Identities=21%  Similarity=0.400  Sum_probs=19.2

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ..|| .|.+|| ..|.+...|..|.+..|.
T Consensus        76 ~k~~-~C~~C~-k~F~~~~~L~~H~~~hh~  103 (133)
T 2lt7_A           76 ERRY-QCLACG-KSFINYQFMSSHIKSVHS  103 (133)
T ss_dssp             CCCE-EESSSC-CEESSHHHHHHHHHHHTC
T ss_pred             Cccc-cCCCCC-CCcCCHHHHHHHhHHhcC
Confidence            3466 777777 777777777777766664

>2ioy_A Periplasmic sugar-binding protein; ribose binding protein, thermophilic proteins; HET: RIP; 1.90A {Thermoanaerobacter tengcongensis}

Probab=92.37  E-value=0.44  Score=38.47  Aligned_cols=70  Identities=13%  Similarity=0.059  Sum_probs=47.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+-......+.   .-.....+.|-.+++|.|++.+.++ +....++.+++.|+.+|+++..
T Consensus        21 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   91 (283)
T 2ioy_A           21 NGAEEKAKELGYKIIVEDSQNDS---SKELSNVEDLIQQKVDVLLINPVDSDAVVTAIKEANSKNIPVITIDRS   91 (283)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHhcCcEEEEecCCCCH---HHHHHHHHHHHHcCCCEEEEeCCchhhhHHHHHHHHHCCCeEEEecCC
Confidence            46777888889888755432222   2222223333368999999987654 4567889999999999999864

>2lt7_A Transcriptional regulator kaiso; zinc finger, double helix, metal binding protein-DNA complex; HET: DNA; NMR {Homo sapiens} PDB: 4f6m_A* 4f6n_A*

Probab=92.37  E-value=0.032  Score=42.87  Aligned_cols=31  Identities=29%  Similarity=0.285  Sum_probs=22.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...-|| .|.+|| ..|.+...|..|.+ +|..|
T Consensus        18 ~Gek~y-~C~~C~-k~F~~~~~L~~H~~-~H~~~   48 (133)
T 2lt7_A           18 DGRVYY-ICIVCK-RSYVCLTSLRRHFN-IHSWE   48 (133)
T ss_dssp             TTEEEE-EETTTC-CEESCHHHHHHHHH-HHHCC
T ss_pred             CCCcCe-ECCCCC-CCcCCHHHHHHHHH-HcCCC
Confidence            345678 888888 88888888888864 57543

>3egc_A Putative ribose operon repressor; structural genomics, unknown function, DNA-binding, transcri transcription regulation, PSI-2; 2.35A {Burkholderia thailandensis}

Probab=92.28  E-value=0.17  Score=40.78  Aligned_cols=70  Identities=9%  Similarity=0.018  Sum_probs=52.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+..+....+.   .-...+.+.|..+++|.|++.+.+. ...+++.+.+.|+.+|+++...
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~-~~~~~~~~~~~~iPvV~~~~~~   97 (291)
T 3egc_A           28 SGVESEARHKGYSVLLANTAEDI---VREREAVGQFFERRVDGLILAPSEG-EHDYLRTELPKTFPIVAVNREL   97 (291)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCCSS-CCHHHHHSSCTTSCEEEESSCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHHCCCCEEEEeCCCC-ChHHHHHhhccCCCEEEEeccc
Confidence            46778889999998866543322   2334445555578999999998776 5678888999999999999873

>2fvy_A D-galactose-binding periplasmic protein; periplasmic binding protien, hinge, chemotaxis, transport,; HET: BGC; 0.92A {Escherichia coli} SCOP: c.93.1.1 PDB: 1glg_A* 2fw0_A* 2gbp_A* 2qw1_A* 2hph_A* 2ipn_A* 2ipm_A* 2ipl_A* 1gca_A* 1gcg_A 3ga5_A* 3gbp_A*

Probab=92.20  E-value=0.4  Score=38.62  Aligned_cols=70  Identities=11%  Similarity=-0.047  Sum_probs=48.5

Q ss_pred             CchhhhhhhhcE-EEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWF-WVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv-~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+ .+.......   |......+.+.|..+++|.|++.+.+.+ ...+++.+++.|+.+|+++..
T Consensus        22 ~gi~~~a~~~g~~~~~~~~~~~---~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~~~~iPvV~~~~~   93 (309)
T 2fvy_A           22 KAIEQDAKAAPDVQLLMNDSQN---DQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE   93 (309)
T ss_dssp             HHHHHHHHTCTTEEEEEEECTT---CHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred             HHHHHHHHhcCCeEEEEecCCC---CHHHHHHHHHHHHHcCCCEEEEeCCCcchhHHHHHHHHHCCCcEEEecCC
Confidence            466777888885 666443221   2233334444444689999999887665 467899999999999999875

>1f2i_G Fusion of N-terminal 17-MER peptide extension to ZIF12; zinc finger, dimer, protein-DNA complex, cooperativity, transcription/DNA complex; 2.35A {Mus musculus} SCOP: g.37.1.1 g.37.1.1

Probab=92.15  E-value=0.065  Score=35.19  Aligned_cols=34  Identities=29%  Similarity=0.456  Sum_probs=26.7

Q ss_pred             cCccCCCCCcccccc--cCCCcccCchHHHHHHHHHhHH
Q 046085           23 KGVIRPAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        23 ~g~i~p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      +.+.....|| .|++  || ..|.+...|..|.+ +|..
T Consensus        11 ~~~~~~~~~~-~C~~~~C~-k~f~~~~~l~~H~~-~h~~   46 (73)
T 1f2i_G           11 NYVVPKMRPY-ACPVESCD-RRFSRSDELTRHIR-IHTG   46 (73)
T ss_dssp             SCCCCCCCCE-ECSSTTBC-CEESSHHHHHHHHH-HHHC
T ss_pred             hccCCCCCcc-CCcCCCCC-CccCCHHHHHHHHH-hhCC
Confidence            3445567889 9985  99 99999999999964 5653

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.14  E-value=0.043  Score=37.54  Aligned_cols=25  Identities=16%  Similarity=0.278  Sum_probs=15.2

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      ..|| .|.+|| ..|.+...|.+|.+.
T Consensus        34 ~~~~-~C~~C~-~~f~~~~~l~~H~~~   58 (96)
T 2dmd_A           34 VKPY-KCKTCD-YAAADSSSLNKHLRI   58 (96)
T ss_dssp             CCSE-ECSSSC-CEESSHHHHHHHHHH
T ss_pred             CCCE-eCCCCC-CccCCHHHHHHHHHH
Confidence            4556 666666 666666666666543

>2yt9_A Zinc finger-containing protein 1; C2H2, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=92.06  E-value=0.076  Score=36.20  Aligned_cols=26  Identities=31%  Similarity=0.562  Sum_probs=18.7

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      ...|| .|.+|| ..|.+...|..|.+.
T Consensus        32 ~~~~~-~C~~C~-~~f~~~~~l~~H~~~   57 (95)
T 2yt9_A           32 GEKPY-SCPVCG-LRFKRKDRMSYHVRS   57 (95)
T ss_dssp             SSCSE-ECSSSC-CEESCHHHHHHHHHH
T ss_pred             CCCCC-cCCCCC-CccCCHHHHHHHHHH
Confidence            44577 777777 777777777777643

>2kmk_A Zinc finger protein GFI-1; tandem repeat zinc finger domain, protein-DNA complex, DNA-B metal-binding, nucleus; HET: DNA; NMR {Rattus norvegicus}

Probab=92.06  E-value=0.085  Score=34.73  Aligned_cols=26  Identities=19%  Similarity=0.250  Sum_probs=22.7

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      ...|| .|.+|| ..|.+...|..|.+.
T Consensus        26 ~~~~~-~C~~C~-~~f~~~~~l~~H~~~   51 (82)
T 2kmk_A           26 DTRPY-PCQYCG-KRFHQKSDMKKHTFI   51 (82)
T ss_dssp             TCCCE-ECSSSC-CEESSHHHHHHHHHH
T ss_pred             CCCCe-eCCcCC-hhhCCHHHHHHHHHH
Confidence            45789 999999 999999999999763

>3e3m_A Transcriptional regulator, LACI family; structural genomics, DNA-binding, plasmid, transcription regulation, PSI-2; 1.60A {Silicibacter pomeroyi}

Probab=92.02  E-value=0.61  Score=39.26  Aligned_cols=69  Identities=13%  Similarity=-0.009  Sum_probs=50.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+.|+.+.......+.   .-...+.+.|..+++|.|++++.+.+ ...+..+.+.|+.+|+|++.
T Consensus        90 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdGiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~  158 (355)
T 3e3m_A           90 QSLTDVLEQGGLQLLLGYTAYSP---EREEQLVETMLRRRPEAMVLSYDGHT-EQTIRLLQRASIPIVEIWEK  158 (355)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTCCSEEEEECSCCC-HHHHHHHHHCCSCEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEECCc
Confidence            47888999999998755432222   22234444455789999999987655 36788899999999999865

>2cot_A Zinc finger protein 435; ADK_LID domain, zinc finger and SCAN domain containing protein 16, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=92.01  E-value=0.077  Score=35.39  Aligned_cols=29  Identities=21%  Similarity=0.259  Sum_probs=24.5

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ....|| .|.+|| ..|.+...|..|.+ +|.
T Consensus        14 ~~~~~~-~C~~C~-~~f~~~~~l~~H~~-~h~   42 (77)
T 2cot_A           14 RERRRY-KCDECG-KSFSHSSDLSKHRR-THT   42 (77)
T ss_dssp             CCSCSS-BCSSSC-CBCSCHHHHHHHHT-TTC
T ss_pred             CCCCCE-ECCCCC-cccCCHHHHHHHHH-HcC
Confidence            446799 999999 99999999999975 453

>2dlk_A Novel protein; ZF-C2H2 domain, zinc finger protein 692, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=91.94  E-value=0.061  Score=35.58  Aligned_cols=31  Identities=19%  Similarity=0.060  Sum_probs=26.1

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|..  || ..|.+...|..|.+..|..+
T Consensus         4 ~~~~~-~C~~~~C~-~~f~~~~~L~~H~~~~H~~~   36 (79)
T 2dlk_A            4 GSSGM-PCDFPGCG-RIFSNRQYLNHHKKYQHIHQ   36 (79)
T ss_dssp             CCSSE-ECSSTTTC-CEESSHHHHHHHHHHGGGSC
T ss_pred             CCCCc-cCCCCCCc-CccCCHHHHHHHHHHHhCCC
Confidence            35688 8887  99 99999999999998888643

>3brq_A HTH-type transcriptional regulator ASCG; transcriptional repressor structure escherichia coli, struct genomics, PSI-2; HET: FRU; 2.00A {Escherichia coli}

Probab=91.87  E-value=0.76  Score=36.59  Aligned_cols=69  Identities=7%  Similarity=-0.063  Sum_probs=47.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHH-cCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATL-RCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARe-r~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .-...+.+.+..++++.|++.+.+.+ ...+..+.+ .|+.+|+++..
T Consensus        41 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~  110 (296)
T 3brq_A           41 FHAARMAEEKGRQLLLADGKHSA---EEERQAIQYLLDLRCDAIMIYPRFLS-VDEIDDIIDAHSQPIMVLNRR  110 (296)
T ss_dssp             HHHHHHHHHTTCEEEEECCTTSH---HHHHHHHHHHHHTTCSEEEEECSSSC-HHHHHHHHHTCSSCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHhcCCCEEEEecCCCC-hHHHHHHHhcCCCCEEEEccc
Confidence            46677788889888765443332   22233333344689999999876644 366788888 89999999865

>3rot_A ABC sugar transporter, periplasmic sugar binding; nysgrc, PSI-biology, structural genomics; 1.91A {Legionella pneumophila subsp}

Probab=91.80  E-value=0.38  Score=39.13  Aligned_cols=73  Identities=10%  Similarity=-0.038  Sum_probs=51.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+...... +..|..-.....+.|-.+++|.|++.+.++ .+...++.+++.|+.+|.++...
T Consensus        23 ~gi~~~a~~~g~~~~~~~~~-~~~~~~~~~~~i~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~giPvV~~~~~~   96 (297)
T 3rot_A           23 QGAKKAAEELKVDLQILAPP-GANDVPKQVQFIESALATYPSGIATTIPSDTAFSKSLQRANKLNIPVIAVDTRP   96 (297)
T ss_dssp             HHHHHHHHHHTCEEEEECCS-SSCCHHHHHHHHHHHHHTCCSEEEECCCCSSTTHHHHHHHHHHTCCEEEESCCC
T ss_pred             HHHHHHHHHhCcEEEEECCC-CcCCHHHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCCEEEEcCCC
Confidence            56778888899999865522 001222233334444468999999987554 46889999999999999998763

>2dmi_A Teashirt homolog 3; zinc finger protein 537, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.79  E-value=0.089  Score=37.33  Aligned_cols=27  Identities=11%  Similarity=-0.015  Sum_probs=24.2

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      ....|| .|.+|| ..|.+...|..|.+.
T Consensus        15 ~~~~~~-~C~~C~-k~f~~~~~L~~H~~~   41 (115)
T 2dmi_A           15 TGASKF-RCKDCS-AAYDTLVELTVHMNE   41 (115)
T ss_dssp             CCCCSE-EBSSSS-CEESSHHHHHHHHHH
T ss_pred             CCCCCE-ECCccC-chhcCHHHHHHHHHH
Confidence            456799 999999 999999999999874

>3kke_A LACI family transcriptional regulator; structural genomics, DNA-binding, transcription regulation, PSI-2; 2.20A {Mycobacterium smegmatis str}

Probab=91.66  E-value=0.4  Score=39.20  Aligned_cols=70  Identities=4%  Similarity=-0.147  Sum_probs=50.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+.......+.   .-...+.+.|..+++|.|++++.+.+-...+..+.+ |+.+|+||...
T Consensus        35 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiI~~~~~~~~~~~~~~l~~-~iPvV~i~~~~  104 (303)
T 3kke_A           35 SGVQMAASGHSTDVLLGQIDAPP---RGTQQLSRLVSEGRVDGVLLQRREDFDDDMLAAVLE-GVPAVTINSRV  104 (303)
T ss_dssp             HHHHHHHHHTTCCEEEEECCSTT---HHHHHHHHHHHSCSSSEEEECCCTTCCHHHHHHHHT-TSCEEEESCCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHhCCCcEEEEecCCCCcHHHHHHHhC-CCCEEEECCcC
Confidence            47788889999988865544333   223445555657999999999876653327778888 99999998764

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.63  E-value=0.064  Score=35.12  Aligned_cols=26  Identities=12%  Similarity=-0.054  Sum_probs=17.7

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      -|..|| .|..|| ..|. ...|.+|-+.
T Consensus         6 C~~~~~-~C~~C~-k~f~-~~~L~~H~~~   31 (66)
T 2eod_A            6 SGKRTQ-PCTYCT-KEFV-FDTIQSHQYQ   31 (66)
T ss_dssp             CCCCEE-ECSSSC-CEEE-HHHHHHHHHH
T ss_pred             CCCCCe-eccccC-CccC-HHHHHHHHHH
Confidence            355677 777777 7777 7777777543

>1zr9_A Zinc finger protein 593; DNA binding, structural genomics, PSI, protein structure initiative, center for eukaryotic structural genomics, CESG; NMR {Homo sapiens} SCOP: g.37.1.4

Probab=91.59  E-value=0.064  Score=43.02  Aligned_cols=32  Identities=9%  Similarity=0.163  Sum_probs=25.7

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQK   62 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr~   62 (230)
                      .-|| .|..|| +.|.+...|..|++.-.-+.+.
T Consensus        48 ekpf-yC~~C~-K~F~~~~~L~~H~rsK~HKrrv   79 (124)
T 1zr9_A           48 GGLH-RCLACA-RYFIDSTNLKTHFRSKDHKKRL   79 (124)
T ss_dssp             GGCS-EETTTT-EECSSHHHHHHHTTCHHHHHHH
T ss_pred             Ccce-EcccCc-chhCCHHHHHHHHhhhhhhHHH
Confidence            3588 999999 9999999999999865433333

>3gv0_A Transcriptional regulator, LACI family; transcription regulator, PSI-II, structural genomics structure initiative; 2.35A {Agrobacterium tumefaciens str}

Probab=91.52  E-value=0.51  Score=38.20  Aligned_cols=69  Identities=6%  Similarity=0.007  Sum_probs=49.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+...........   ...+.+++..+++|.|++++.+.+ ...++.+.+.|+.+|+||..
T Consensus        30 ~gi~~~a~~~g~~~~~~~~~~~~~~---~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~i~~~   98 (288)
T 3gv0_A           30 FGITEVLSTTQYHLVVTPHIHAKDS---MVPIRYILETGSADGVIISKIEPN-DPRVRFMTERNMPFVTHGRS   98 (288)
T ss_dssp             HHHHHHHTTSSCEEEECCBSSGGGT---THHHHHHHHHTCCSEEEEESCCTT-CHHHHHHHHTTCCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEecCCcchhH---HHHHHHHHHcCCccEEEEecCCCC-cHHHHHHhhCCCCEEEECCc
Confidence            3778889999999886654333211   223444455689999999875533 26788899999999999975

>3kjx_A Transcriptional regulator, LACI family; LACL family, protein structure initiative II(PSI II), NYSGXRC, structural genomics; 2.33A {Silicibacter pomeroyi}

Probab=91.39  E-value=0.56  Score=39.17  Aligned_cols=68  Identities=4%  Similarity=-0.191  Sum_probs=48.5

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..++...|+.+.......+.   .....+.+.|..+++|.|++++.+.+- ..+..+.+.|+.+|+||+.
T Consensus        89 gi~~~a~~~g~~~~~~~~~~~~---~~~~~~i~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~i~~~  156 (344)
T 3kjx_A           89 GINQVLEDTELQPVVGVTDYLP---EKEEKVLYEMLSWRPSGVIIAGLEHSE-AARAMLDAAGIPVVEIMDS  156 (344)
T ss_dssp             HHHHHHTSSSSEEEEEECTTCH---HHHHHHHHHHHTTCCSEEEEECSCCCH-HHHHHHHHCSSCEEEEEEC
T ss_pred             HHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHHhCCCCEEEEeCC
Confidence            7888899999988754332222   222344444557899999999766443 6788899999999999765

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=91.37  E-value=0.2  Score=34.11  Aligned_cols=25  Identities=32%  Similarity=0.371  Sum_probs=18.7

Q ss_pred             cccccccCCCcccCchHHHHHHHHHhHH
Q 046085           32 YVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        32 y~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      | .|.+|| ..|.+...|..|.+ +|..
T Consensus        63 ~-~C~~C~-k~f~~~~~L~~H~~-~H~~   87 (95)
T 2ej4_A           63 E-ECPREG-KSFKAKYKLVNHIR-VHTG   87 (95)
T ss_dssp             T-TCSSTT-CCCSSHHHHHHHHH-HHHT
T ss_pred             c-CCCCCC-cccCCHHHHHHHHH-hcCC
Confidence            6 788888 88888888888865 4643

>2rjo_A Twin-arginine translocation pathway signal protei; PSI-2, NYSGXRC, twin arginine translocation pathway signal P structural genomics; HET: GAL; 2.05A {Burkholderia phytofirmans}

Probab=91.30  E-value=0.47  Score=39.35  Aligned_cols=70  Identities=7%  Similarity=-0.157  Sum_probs=48.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcC--cceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRR--FGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~--vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .....+.+.|...+  +|.|++.+.+++ +..+++.+.+.|+.+|+++..
T Consensus        25 ~gi~~~a~~~g~~l~~~~~~~~~---~~~~~~i~~l~~~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   97 (332)
T 2rjo_A           25 KGAQSFAKSVGLPYVPLTTEGSS---EKGIADIRALLQKTGGNLVLNVDPNDSADARVIVEACSKAGAYVTTIWNK   97 (332)
T ss_dssp             HHHHHHHHHHTCCEEEEECTTCH---HHHHHHHHHHHHHTTTCEEEEECCSSHHHHHHHHHHHHHHTCEEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEecCCCCH---HHHHHHHHHHHHCCCCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEECCC
Confidence            46777788888888755432222   22333334444578  999999887654 457889999999999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=91.30  E-value=0.065  Score=35.98  Aligned_cols=23  Identities=17%  Similarity=0.244  Sum_probs=15.5

Q ss_pred             CCCcccccccCCCcccCchHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      ..|| .|.+|| ..|.+...|..|.
T Consensus        63 ~~~~-~C~~C~-~~f~~~~~l~~H~   85 (89)
T 2wbs_A           63 HRPF-QCQKCD-RAFSRSDHLALHM   85 (89)
T ss_dssp             CCCE-ECSSSS-CEESSHHHHHHHG
T ss_pred             CCCc-cCCCCC-cccCCHHHHHHHH
Confidence            3566 777777 7777777777664

>2ee8_A Protein ODD-skipped-related 2; zinc binding, ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: k.12.1.1

Probab=91.29  E-value=0.13  Score=35.74  Aligned_cols=25  Identities=12%  Similarity=0.214  Sum_probs=19.2

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      +..|| .|.+|| ..|.+...|..|.+
T Consensus        14 ~~~~~-~C~~C~-~~f~~~~~l~~H~~   38 (106)
T 2ee8_A           14 TKKEF-ICKFCG-RHFTKSYNLLIHER   38 (106)
T ss_dssp             CCCCC-BCSSSC-CBCSSHHHHHHHHH
T ss_pred             CCcCe-ECCCCC-CccCCHHHHHHHHH
Confidence            45577 888888 88888888888865

>3h5o_A Transcriptional regulator GNTR; transcription regulator, GNTR,chromobacterium violaceum, PSI, SGX, DNA-binding; 2.30A {Chromobacterium violaceum}

Probab=91.10  E-value=0.63  Score=38.79  Aligned_cols=69  Identities=6%  Similarity=-0.102  Sum_probs=49.6

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+.|+.+.......+.   .-...+.+.+..+++|.|++++.+.+- .++..+.+.|+.+|++++.
T Consensus        82 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~  150 (339)
T 3h5o_A           82 TGIETVLDAAGYQMLIGNSHYDA---GQELQLLRAYLQHRPDGVLITGLSHAE-PFERILSQHALPVVYMMDL  150 (339)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHTTCCSEEEEECSCCCT-THHHHHHHTTCCEEEEESC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHcCCCCEEEEeCCCCCH-HHHHHHhcCCCCEEEEeec
Confidence            37888999999998855433222   223344445557899999999855443 6788889999999999875

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=90.86  E-value=0.085  Score=34.83  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=15.9

Q ss_pred             CCCcccccc--cCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|.+  || ..|.+...|..|.+
T Consensus        29 ~~~~-~C~~~~C~-~~f~~~~~l~~H~~   54 (85)
T 2j7j_A           29 QLPY-ECPHEGCD-KRFSLPSRLKRHEK   54 (85)
T ss_dssp             TCCE-ECCSTTCC-CEESSHHHHHHHHH
T ss_pred             CCCe-eCCCCCCc-CccCCHHHHHHHHH
Confidence            4566 6766  77 66777777776653

>2dlq_A GLI-kruppel family member HKR3; ZF-C2H2 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=90.86  E-value=0.28  Score=34.59  Aligned_cols=23  Identities=13%  Similarity=0.059  Sum_probs=11.2

Q ss_pred             CCCcccccccCCCcccCchHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      ..|| .|.+|| ..|.+...|..|.
T Consensus        64 ~~~~-~C~~C~-~~f~~~~~l~~H~   86 (124)
T 2dlq_A           64 EQVF-TCSVCQ-ETFRRRMELRLHM   86 (124)
T ss_dssp             CCCE-ECSSSC-CEESSHHHHHHHH
T ss_pred             CCCe-ECCCCC-CccCCHHHHHHHH
Confidence            3444 455555 4555555555444

>1a1h_A QGSR zinc finger peptide; complex (zinc finger/DNA), DNA-binding protein, transcription/DNA complex; HET: DNA; 1.60A {Mus musculus} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1jk2_A 1jk1_A 1a1g_A* 1a1f_A* 1a1i_A* 1a1j_A* 1a1k_A* 1aay_A* 1a1l_A* 1p47_A 1zaa_C* 1g2f_C 1g2d_C

Probab=90.81  E-value=0.13  Score=34.48  Aligned_cols=31  Identities=26%  Similarity=0.419  Sum_probs=21.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.+...|.+|.+ +|..|
T Consensus        58 ~~~~~~-~C~~C~-~~f~~~~~l~~H~~-~H~~~   88 (90)
T 1a1h_A           58 TGEKPF-ACDICG-RKFARSDERKRHTK-IHLRQ   88 (90)
T ss_dssp             HCCCCE-ECTTTC-CEESSHHHHHHHHG-GGGC-
T ss_pred             CCCCCc-cCCCCC-chhCCHHHHHHHHH-Hhccc
Confidence            356677 788888 77888888888864 45544

>2dmd_A Zinc finger protein 64, isoforms 1 and 2; ZNF338, nuclear protein, DNA- binding, transcription, C2H2-type zinc finger, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1

Probab=90.62  E-value=0.11  Score=35.54  Aligned_cols=26  Identities=27%  Similarity=0.324  Sum_probs=23.3

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ....|| .|.+|| ..|.+...|..|.+
T Consensus         4 ~~~~~~-~C~~C~-~~f~~~~~l~~H~~   29 (96)
T 2dmd_A            4 GSSGPH-KCEVCG-KCFSRKDKLKTHMR   29 (96)
T ss_dssp             CCCCCC-CBTTTT-BCCCCHHHHHHHGG
T ss_pred             CCCcCe-ECCCCC-CccCCHHHHHHHHH
Confidence            456799 999999 99999999999976

>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}

Probab=90.61  E-value=0.094  Score=33.86  Aligned_cols=30  Identities=20%  Similarity=0.332  Sum_probs=26.1

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .|+. +||.|. ..|.+-..|..||...|..+
T Consensus         3 ~EGF-iCP~C~-~~l~s~~~L~~Hye~~H~~~   32 (34)
T 3mjh_B            3 SEGF-ICPQCM-KSLGSADELFKHYEAVHDAG   32 (34)
T ss_dssp             SEEE-ECTTTC-CEESSHHHHHHHHHHHTSSS
T ss_pred             Cccc-CCcHHH-HHcCCHHHHHHHHHhccccC
Confidence            3566 999999 99999999999999999643

>3e61_A Putative transcriptional repressor of ribose OPER; structural genomics, DNA-binding, transcripti regulation, PSI-2; 2.00A {Staphylococcus saprophyticus subsp}

Probab=90.60  E-value=0.6  Score=37.20  Aligned_cols=68  Identities=4%  Similarity=-0.112  Sum_probs=48.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHH-HHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQ-EATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr-~ARer~l~TVVVGd~~  177 (230)
                      .|+..+++..|+.+.......+.   .....+.+.+..+++|.|++.+.+   .+.++ .+.+.|+.+|+||...
T Consensus        28 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~~dgiIi~~~~---~~~~~~~l~~~~iPvV~~~~~~   96 (277)
T 3e61_A           28 RGVEDVALAHGYQVLIGNSDNDI---KKAQGYLATFVSHNCTGMISTAFN---ENIIENTLTDHHIPFVFIDRIN   96 (277)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECGGG---HHHHHHHHHHC-CCEEEGGGCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEecCC---hHHHHHHHHcCCCCEEEEeccC
Confidence            46778888999988865444333   333445555557899999999843   45678 8899999999998863

>3d02_A Putative LACI-type transcriptional regulator; periplasmic sugar-binding protein, structura genomics; HET: MSE GOL; 1.30A {Klebsiella pneumoniae subsp}

Probab=90.59  E-value=0.66  Score=37.33  Aligned_cols=70  Identities=11%  Similarity=0.085  Sum_probs=47.3

Q ss_pred             CchhhhhhhhcEEEEEcc-ccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMS-DKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~-dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+. ...+.   .-...+.+.+-.++++.|++.+.+++ +..+++.+.+.|+.+|.++..
T Consensus        24 ~g~~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiii~~~~~~~~~~~~~~~~~~~ipvV~~~~~   95 (303)
T 3d02_A           24 EGVVQAGKEFNLNASQVGPSSTDA---PQQVKIIEDLIARKVDAITIVPNDANVLEPVFKKARDAGIVVLTNESP   95 (303)
T ss_dssp             HHHHHHHHHTTEEEEEECCSSSCH---HHHHHHHHHHHHTTCSEEEECCSCHHHHHHHHHHHHHTTCEEEEESCT
T ss_pred             HHHHHHHHHcCCEEEEECCCCCCH---HHHHHHHHHHHHcCCCEEEEecCChHHHHHHHHHHHHCCCeEEEEecC
Confidence            466777888899887443 22222   22223333333689999999887654 457889999999999999864

>2eod_A TNF receptor-associated factor 4; zinc binding, NF-KB, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=90.45  E-value=0.15  Score=33.28  Aligned_cols=28  Identities=21%  Similarity=0.218  Sum_probs=24.4

Q ss_pred             CCCCCccccc-ccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVI-VEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~-VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      .+..|| .|. .|| ..|.....|.+|.+ +|
T Consensus        32 ~~~~p~-~C~~~C~-k~f~~~~~L~~H~~-~h   60 (66)
T 2eod_A           32 CPRLPV-ACPNQCG-VGTVAREDLPGHLK-DS   60 (66)
T ss_dssp             CSSSEE-ECTTCCS-CCEEETTTHHHHHH-TT
T ss_pred             cCCcCc-cCCcccC-cccccHHHHHHHHH-hh
Confidence            677899 999 999 99999999999964 45

>3c3k_A Alanine racemase; structural genomics, protein structure initiative, NEW YORK research center for structural genomics, nysgxrc; 1.99A {Actinobacillus succinogenes}

Probab=90.24  E-value=0.69  Score=37.34  Aligned_cols=68  Identities=4%  Similarity=0.005  Sum_probs=45.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+   ..-...+.+.+..+++|.|++++.+.+ ...+..+. .|+.+|+++..
T Consensus        28 ~gi~~~~~~~g~~~~~~~~~~~---~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~-~~iPvV~~~~~   95 (285)
T 3c3k_A           28 KGIEKTAEKNGYRILLCNTESD---LARSRSCLTLLSGKMVDGVITMDALSE-LPELQNII-GAFPWVQCAEY   95 (285)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTC---HHHHHHHTHHHHTTCCSEEEECCCGGG-HHHHHHHH-TTSSEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCC---HHHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHh-cCCCEEEEccc
Confidence            4667778888988875543222   222333444454689999999875543 35677777 99999999865

>2o20_A Catabolite control protein A; CCPA, transcriptional regulator, helix-turn-helix, transcrip; 1.90A {Lactococcus lactis}

Probab=90.23  E-value=0.88  Score=37.80  Aligned_cols=69  Identities=4%  Similarity=-0.006  Sum_probs=47.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .....+.+.|..+++|.|++++.+.+ ...+..+.+.|+.+|+++..
T Consensus        83 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~  151 (332)
T 2o20_A           83 RGVDDIASMYKYNMILANSDNDV---EKEEKVLETFLSKQVDGIVYMGSSLD-EKIRTSLKNSRTPVVLVGTI  151 (332)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECSSCCC-HHHHHHHHHHCCCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEECCCCh---HHHHHHHHHHHhCCCCEEEEeCCCCC-HHHHHHHHhCCCCEEEEccc
Confidence            47778888999988755433222   22233344444689999999885443 35677788899999999875

>2x7x_A Sensor protein; transferase, sensor histidine kinase; HET: FRU; 2.64A {Bacteroides thetaiotaomicron}

Probab=90.20  E-value=0.94  Score=37.51  Aligned_cols=70  Identities=9%  Similarity=-0.000  Sum_probs=46.5

Q ss_pred             Cchhhhhhhh-cEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRV-WFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRA-Gv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++... |+.+.......+.   .....+.+.+-.+++|.|++.+.+.+ +...++.+.+.|+.+|+++..
T Consensus        25 ~gi~~~a~~~~g~~l~i~~~~~~~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~~iPvV~~~~~   96 (325)
T 2x7x_A           25 DEILREAMFYNGVSVEIRSAGDDN---SKQAEDVHYFMDEGVDLLIISANEAAPMTPIVEEAYQKGIPVILVDRK   96 (325)
T ss_dssp             HHHHHHHTTSSSCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCSSHHHHHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCcEEEEeCCCCCH---HHHHHHHHHHHHcCCCEEEEeCCCHHHHHHHHHHHHHCCCeEEEeCCC
Confidence            3566667777 8877654322221   22233333333689999999876654 467888899999999999875

>3o1i_D Periplasmic protein TORT; ligand free, two component sensor, periplasmic binding prote signaling protein; HET: PE4; 2.80A {Vibrio parahaemolyticus} PDB: 3o1h_B* 3o1j_C

Probab=90.20  E-value=0.24  Score=39.83  Aligned_cols=71  Identities=7%  Similarity=0.022  Sum_probs=48.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+....... ..|..-.....+.|-.+++|.|++.+-+++ +...++.+. .|+.+|+++..
T Consensus        25 ~g~~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~~~~~~vdgiii~~~~~~~~~~~~~~~~-~~iPvV~~~~~   96 (304)
T 3o1i_D           25 YGMVSEAEKQGVNLRVLEAGG-YPNKSRQEQQLALCTQWGANAIILGTVDPHAYEHNLKSWV-GNTPVFATVNQ   96 (304)
T ss_dssp             HHHHHHHHHHTCEEEEEECSS-TTCHHHHHHHHHHHHHHTCSEEEECCSSTTSSTTTHHHHT-TTSCEEECSSC
T ss_pred             HHHHHHHHHcCCeEEEEcCCC-CCCHHHHHHHHHHHHHcCCCEEEEeCCChhHHHHHHHHHc-CCCCEEEecCC
Confidence            467778888899888654432 112233334444444689999999876654 456788888 99999999765

>3bbl_A Regulatory protein of LACI family; protein structure initiative II, PSI-II, NYSGXRC, transcript regulator, periplasmic binding protein; 2.35A {Chloroflexus aggregans}

Probab=90.17  E-value=0.37  Score=39.00  Aligned_cols=69  Identities=13%  Similarity=0.012  Sum_probs=46.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .-...+.+.+..+++|.|++.+.+.+ ...++.+.+.|+.+|+++..
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~~~~~-~~~~~~l~~~~iPvV~~~~~   96 (287)
T 3bbl_A           28 SSMVREAGAVNYFVLPFPFSEDR---SQIDIYRDLIRSGNVDGFVLSSINYN-DPRVQFLLKQKFPFVAFGRS   96 (287)
T ss_dssp             HHHHHHHHHTTCEEEECCCCSST---TCCHHHHHHHHTTCCSEEEECSCCTT-CHHHHHHHHTTCCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCch---HHHHHHHHHHHcCCCCEEEEeecCCC-cHHHHHHHhcCCCEEEECCc
Confidence            46777888889888755422111   11122333444689999999876543 26788888899999999865

>2ctd_A Zinc finger protein 512; zinc binding, two ZF-C2H2 domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=90.15  E-value=0.15  Score=36.79  Aligned_cols=27  Identities=7%  Similarity=-0.168  Sum_probs=23.5

Q ss_pred             CCCCcccccccCCCcc-cCchHHHHHHHHHh
Q 046085           28 PAEPYVLVIVEGDLRL-YNNDKLVNHFKQIH   57 (230)
Q Consensus        28 p~epy~~C~VCGdrkf-~t~~kL~kHFkqlH   57 (230)
                      ...|| .|.+|| ..| .+...|..|.+ +|
T Consensus        31 ~~~~~-~C~~C~-k~F~~~~~~L~~H~~-~h   58 (96)
T 2ctd_A           31 DKGSV-SCPTCQ-AVGRKTIEGLKKHME-NC   58 (96)
T ss_dssp             HTSCE-ECTTTC-SCEESSHHHHHHHHH-HH
T ss_pred             CCCCc-CCCCCC-CCcccCHHHHHHHHH-HH
Confidence            45799 999999 999 89999999965 46

>1jx6_A LUXP protein; protein-ligand complex, signaling protein; HET: AI2; 1.50A {Vibrio harveyi} SCOP: c.93.1.1 PDB: 1zhh_A* 2hj9_A*

Probab=90.14  E-value=0.5  Score=39.11  Aligned_cols=71  Identities=11%  Similarity=0.053  Sum_probs=45.4

Q ss_pred             chhhhhhhhcEEEEEc--cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          105 SLVVKLKRVWFWVRTM--SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV--~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      |+..++++.|+.+...  ...++ .|..-.....+.|..+++|.|++.++.......++.+.+.|..+|++.|.
T Consensus        65 gi~~~a~~~g~~~~~~~~~~~~~-~~~~~~~~~i~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~ip~V~~~~~  137 (342)
T 1jx6_A           65 SFEKRLYKLNINYQLNQVFTRPN-ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI  137 (342)
T ss_dssp             HHHHHHHHTTCCEEEEEEECCTT-CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETC
T ss_pred             HHHHHHHHcCCeEEEEecCCCCc-cCHHHHHHHHHHHHhcCCCEEEEeCChHhHHHHHHHHHHcCCCEEEEecC
Confidence            7788889999766643  11110 11122223333344689999999444444578899999999999988543

>2iks_A DNA-binding transcriptional dual regulator; escherichia coli structural genomics, PSI-2, protein structure initiative; 1.85A {Escherichia coli}

Probab=90.06  E-value=0.41  Score=38.74  Aligned_cols=70  Identities=6%  Similarity=-0.087  Sum_probs=47.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.......+.   .-...+.+.+..+++|.|++++.+++-..++..+.+.|+.+|+++..
T Consensus        40 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~iPvV~~~~~  109 (293)
T 2iks_A           40 NYLERQARQRGYQLLIACSEDQP---DNEMRCIEHLLQRQVDAIIVSTSLPPEHPFYQRWANDPFPIVALDRA  109 (293)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCSSCTTCHHHHTTTTSSSCEEEEESC
T ss_pred             HHHHHHHHHCCCEEEEEcCCCCH---HHHHHHHHHHHHcCCCEEEEeCCCCCcHHHHHHHHhCCCCEEEECCc
Confidence            46777888889888754432222   22233344444689999999876543245778888899999999865

>2wbt_A B-129; zinc finger; 2.70A {Sulfolobus virus 1}

Probab=90.01  E-value=0.12  Score=37.41  Aligned_cols=26  Identities=15%  Similarity=0.169  Sum_probs=22.0

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHh
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      .|| .|.+|| ..|.+...|.+|.+.-|
T Consensus        99 ~~~-~C~~C~-k~f~~~~~l~~H~~~h~  124 (129)
T 2wbt_A           99 HTK-VCPVCK-KEFTSTDSALDHVCKKH  124 (129)
T ss_dssp             CCC-BCTTTC-CBCSSHHHHHHHHHHTT
T ss_pred             CCC-CCCCCC-cccCCHHHHHHHHHHHC
Confidence            046 899999 99999999999987655

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=89.85  E-value=0.097  Score=40.34  Aligned_cols=28  Identities=25%  Similarity=0.373  Sum_probs=22.2

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ...|| .|.+|| ..|.+...|..|.+. |.
T Consensus       130 ~~~~~-~C~~C~-~~f~~~~~L~~H~~~-H~  157 (190)
T 2i13_A          130 GEKPY-KCPECG-KSFSREDNLHTHQRT-HT  157 (190)
T ss_dssp             CCCCE-ECTTTC-CEESCHHHHHHHHHH-HH
T ss_pred             CCCCe-ECCCCC-cccCCHHHHHHHHHh-cC
Confidence            45688 888898 888888888888764 54

>3bil_A Probable LACI-family transcriptional regulator; structural genomics, unknown function, PSI-2, protein structure initiative; 2.50A {Corynebacterium glutamicum atcc 13032}

Probab=89.67  E-value=0.86  Score=38.46  Aligned_cols=69  Identities=4%  Similarity=0.021  Sum_probs=47.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++...|+.+.......+.   .-...+.+.|..+++|.|++.+.+.+ ...+..+.+.|+.+|+|+..
T Consensus        86 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~i~~~  154 (348)
T 3bil_A           86 TEIQSTASKAGLATIITNSNEDA---TTMSGSLEFLTSHGVDGIICVPNEEC-ANQLEDLQKQGMPVVLVDRE  154 (348)
T ss_dssp             HHHHHHHHHTTCCEEEEECTTCH---HHHHHHHHHHHHTTCSCEEECCCGGG-HHHHHHHHHC-CCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHhCCCCEEEEeCCCCC-hHHHHHHHhCCCCEEEEccc
Confidence            46777888899888754432222   22333444454689999999876554 46788888899999999875

>3brs_A Periplasmic binding protein/LACI transcriptional; structural genomics, protein structure initiative; 2.00A {Clostridium phytofermentans}

Probab=89.58  E-value=0.77  Score=36.65  Aligned_cols=72  Identities=15%  Similarity=0.094  Sum_probs=48.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+..+.... ..|..-...+.+.+-..++|.|++.+.++ ++..+++.+.+.|+.+|+++..
T Consensus        27 ~gi~~~a~~~g~~~~~~~~~~-~~~~~~~~~~~~~l~~~~vdgii~~~~~~~~~~~~~~~~~~~~iPvV~~~~~   99 (289)
T 3brs_A           27 EGAQMAAKEYEIKLEFMAPEK-EEDYLVQNELIEEAIKRKPDVILLAAADYEKTYDAAKEIKDAGIKLIVIDSG   99 (289)
T ss_dssp             HHHHHHHHHHTCEEEECCCSS-TTCHHHHHHHHHHHHHTCCSEEEECCSCTTTTHHHHTTTGGGTCEEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEecCCC-CCCHHHHHHHHHHHHHhCCCEEEEeCCChHHhHHHHHHHHHCCCcEEEECCC
Confidence            377788888999888654210 11112222333334468999999987554 4567888899999999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=89.50  E-value=0.15  Score=37.66  Aligned_cols=31  Identities=19%  Similarity=0.283  Sum_probs=24.6

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.+  || ..|.+...|.+|.+.+|..+
T Consensus        94 ~~~~~-~C~~~~C~-~~f~~~~~L~~H~~~~H~~~  126 (155)
T 2gli_A           94 GEKPY-MCEHEGCS-KAFSNASDRAKHQNRTHSNE  126 (155)
T ss_dssp             TCCCE-ECCSTTCC-CEESSSSTTHHHHHHTTCSC
T ss_pred             CCCCe-eCCCCCCC-CccCCHHHHHHHHHHhcCCC
Confidence            45678 8887  88 88888888888888888754

>3qk7_A Transcriptional regulators; structural genomics, NEW YORK structural genomix research CO NYSGXRC, PSI-2, protein structur initiative; 2.70A {Yersinia pestis}

Probab=89.49  E-value=0.38  Score=39.15  Aligned_cols=68  Identities=12%  Similarity=0.065  Sum_probs=48.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++.+.|+.+........    .-...+.+.+..+++|.|++++.+.+- ..+..+.+.|+.+|+||..
T Consensus        30 ~gi~~~a~~~g~~~~~~~~~~~----~~~~~~~~~l~~~~vdGiIi~~~~~~~-~~~~~l~~~~iPvV~~~~~   97 (294)
T 3qk7_A           30 SWIGIELGKRGLDLLLIPDEPG----EKYQSLIHLVETRRVDALIVAHTQPED-FRLQYLQKQNFPFLALGRS   97 (294)
T ss_dssp             HHHHHHHHHTTCEEEEEEECTT----CCCHHHHHHHHHTCCSEEEECSCCSSC-HHHHHHHHTTCCEEEESCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCh----hhHHHHHHHHHcCCCCEEEEeCCCCCh-HHHHHHHhCCCCEEEECCC
Confidence            4677888888988875543221    112334455556899999999876543 7888999999999999975

>2l69_A Rossmann 2X3 fold protein; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Artificial gene}

Probab=89.44  E-value=0.8  Score=36.78  Aligned_cols=65  Identities=22%  Similarity=0.231  Sum_probs=53.0

Q ss_pred             hhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHH-HHHHHHHcCCeEEEecCC
Q 046085          107 VVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVE-VLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       107 a~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~-lLr~ARer~l~TVVVGd~  176 (230)
                      -+.++..||.|+||.. ||.    |+..+.+...+.+..-+|.|-||.+++. .+|+.+.-|..+.+|=..
T Consensus        19 kdiikkngfkvrtvrs-pqe----lkdsieelvkkynativvvvvddkewaekairfvkslgaqvliiiyd   84 (134)
T 2l69_A           19 KDIIKKNGFKVRTVRS-PQE----LKDSIEELVKKYNATIVVVVVDDKEWAEKAIRFVKSLGAQVLIIIYD   84 (134)
T ss_dssp             HHHHHHTTCEEEEECS-HHH----HHHHHHHHTTCCCCEEEEEECSSHHHHHHHHHHHHHHCCCCEEEEEC
T ss_pred             HHHHHhcCceEEEecC-HHH----HHHHHHHHHHHhCCeEEEEEEccHHHHHHHHHHHHhcCCeEEEEEEe
Confidence            4668899999999975 664    7888888888888888999999999975 688889999988766443

>2l82_A Designed protein OR32; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, de novo protein; NMR {Artificial gene}

Probab=89.41  E-value=1.4  Score=36.33  Aligned_cols=69  Identities=19%  Similarity=0.163  Sum_probs=47.8

Q ss_pred             hhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC-cc-hHHHHHHHHHcCCeEEEecCCCCch
Q 046085          108 VKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD-SD-FVEVLQEATLRCLKTGVAGYMNDGT  180 (230)
Q Consensus       108 ~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD-SD-F~~lLr~ARer~l~TVVVGd~~~~a  180 (230)
                      .|....||-|+||.||..--  --++.+++-.  -..+.+|+|+-| .. ..+++..|+++|+.+.||=+..+..
T Consensus        46 eefekqgvdvrtvedkedfr--enireiwery--pqldvvvivttddkewikdfieeakergvevfvvynnkddd  116 (162)
T 2l82_A           46 EEFEKQGVDVRTVEDKEDFR--ENIREIWERY--PQLDVVVIVTTDDKEWIKDFIEEAKERGVEVFVVYNNKDDD  116 (162)
T ss_dssp             HHHHTTTCEEEECCSHHHHH--HHHHHHHHHC--TTCCEEEEEECCCHHHHHHHHHHHHHTTCEEEEEEECSCHH
T ss_pred             HHHHHcCCceeeeccHHHHH--HHHHHHHHhC--CCCcEEEEEecCcHHHHHHHHHHHHhcCcEEEEEecCCCch
Confidence            35667899999999997631  1233444433  246888887654 44 4578999999999999998764333

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=89.34  E-value=0.2  Score=35.20  Aligned_cols=24  Identities=17%  Similarity=0.317  Sum_probs=16.5

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|.+|| ..|.+...|..|.+
T Consensus        64 ~~~~-~C~~C~-~~f~~~~~l~~H~~   87 (119)
T 2jp9_A           64 VKPF-QCKTCQ-RKFSRSDHLKTHTR   87 (119)
T ss_dssp             CCCE-ECTTTC-CEESCHHHHHHHHH
T ss_pred             CCCc-cCCccC-chhCCHHHHHHHHH
Confidence            4567 777777 77777777777764

>3clk_A Transcription regulator; 11017J, PSI-II, NYSGXRC, dimer, structural genomics, protein structure initiative; 2.08A {Lactobacillus plantarum WCFS1}

Probab=89.33  E-value=0.38  Score=38.87  Aligned_cols=69  Identities=7%  Similarity=-0.110  Sum_probs=40.6

Q ss_pred             CchhhhhhhhcEEEEEc-cccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTM-SDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV-~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+... ....+.   .-...+.+.+..+++|.|++.+.+.+ ...++.+.+.|+.+|+++..
T Consensus        28 ~gi~~~a~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~   97 (290)
T 3clk_A           28 DGIQEEAHKNGYNLIIVYSGSADP---EEQKHALLTAIERPVMGILLLSIALT-DDNLQLLQSSDVPYCFLSMG   97 (290)
T ss_dssp             HHHHHHHHTTTCEEEEEC-------------CHHHHHHSSCCSEEEEESCC-----CHHHHHCC--CEEEESCC
T ss_pred             HHHHHHHHHcCCeEEEEeCCCCCH---HHHHHHHHHHHhcCCCEEEEecccCC-HHHHHHHHhCCCCEEEEcCC
Confidence            46777888889888765 332221   22233344444689999999876543 35677788899999999875

>2gli_A Protein (five-finger GLI); protein/DNA complex, transcription/DNA complex; HET: DNA; 2.60A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1

Probab=89.32  E-value=0.11  Score=38.31  Aligned_cols=30  Identities=17%  Similarity=0.195  Sum_probs=23.7

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...|| .|.+  || ..|.+...|..|.+. |.-+
T Consensus        64 ~~~~~-~C~~~~C~-~~f~~~~~l~~H~~~-h~~~   95 (155)
T 2gli_A           64 GEKPH-KCTFEGCR-KSYSRLENLKTHLRS-HTGE   95 (155)
T ss_dssp             CCCCC-CCCSTTCC-CCCSSHHHHHHHHHH-TTTC
T ss_pred             CCCCc-cCCCCCCC-CcccCHHHHHHHHHH-cCCC
Confidence            45688 8986  99 999999999999875 6544

>2hsg_A Glucose-resistance amylase regulator; CCPA, transcriptional regulator, transcription regulator; 2.50A {Bacillus megaterium} SCOP: a.35.1.5 c.93.1.1 PDB: 1rzr_G 2jcg_A 1zvv_A 3oqo_A* 3oqm_A* 3oqn_A*

Probab=89.11  E-value=0.83  Score=37.83  Aligned_cols=69  Identities=9%  Similarity=0.024  Sum_probs=49.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++...|+.+.......   |......+.+.+..+++|.|++.+.+.+ ...+..+.+.|+.+|+++..
T Consensus        80 ~gi~~~a~~~g~~~~~~~~~~---~~~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~iPvV~~~~~  148 (332)
T 2hsg_A           80 RGIEDIATMYKYNIILSNSDQ---NQDKELHLLNNMLGKQVDGIIFMSGNVT-EEHVEELKKSPVPVVLAASI  148 (332)
T ss_dssp             HHHHHHHHHHTCEEEEEECCS---HHHHHHHHHHHTSCCSSCCEEECCSSCC-HHHHHHHTTSSSCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEeCCC---ChHHHHHHHHHHHhCCCcEEEEecCCCC-HHHHHHHHhCCCCEEEEccc
Confidence            467788889999887554322   2233344555555789999999876544 36788888899999999875

>3k9c_A Transcriptional regulator, LACI family protein; PSI-II, 11026W, structural genomics, PR structure initiative; 2.14A {Rhodococcus jostii}

Probab=89.09  E-value=0.75  Score=37.32  Aligned_cols=67  Identities=12%  Similarity=0.021  Sum_probs=46.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+..........    .....+.|..+++|.|++.+.+.+- ..++.+.+ |+.+|+||..
T Consensus        31 ~gi~~~a~~~g~~~~~~~~~~~~~----~~~~~~~l~~~~vdgiIi~~~~~~~-~~~~~~~~-~iPvV~i~~~   97 (289)
T 3k9c_A           31 EQIYAAATRRGYDVMLSAVAPSRA----EKVAVQALMRERCEAAILLGTRFDT-DELGALAD-RVPALVVARA   97 (289)
T ss_dssp             HHHHHHHHHTTCEEEEEEEBTTBC----HHHHHHHHTTTTEEEEEEETCCCCH-HHHHHHHT-TSCEEEESSC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCHH----HHHHHHHHHhCCCCEEEEECCCCCH-HHHHHHHc-CCCEEEEcCC
Confidence            467788889998887554333221    2223333446899999999876654 67777776 9999999976

>2ent_A Krueppel-like factor 15; zinc binding, transcription factor, adipogenesis, CLCNKA, chloride channel Ka, rhodopsin, IRBP; NMR {Homo sapiens} SCOP: k.12.1.1

Probab=88.89  E-value=0.18  Score=30.40  Aligned_cols=29  Identities=24%  Similarity=0.402  Sum_probs=24.1

Q ss_pred             CCCCCccccc--ccCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVI--VEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~--VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ....|| .|.  .|| ..|.....|..|.+ +|.
T Consensus         8 ~~~k~~-~C~~~~C~-k~f~~~~~L~~H~~-~H~   38 (48)
T 2ent_A            8 TGEKPF-ACTWPGCG-WRFSRSDELSRHRR-SHS   38 (48)
T ss_dssp             CCCCCE-ECCSSSCC-CEESSHHHHHHHHT-TSC
T ss_pred             CCCCCe-ECCCCCCC-CccCCHHHHHHHHH-HhC
Confidence            456799 998  899 99999999999964 464

>2csh_A Zinc finger protein 297B; ZF-C2H2 domain, zinc finger and BTB domain containing protein 22B, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.37.1.1 g.37.1.1

Probab=88.85  E-value=0.14  Score=35.95  Aligned_cols=27  Identities=37%  Similarity=0.492  Sum_probs=21.2

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ...|| .|.+|| ..|.+...|..|.+ +|
T Consensus        34 ~~~~~-~C~~C~-~~f~~~~~l~~H~~-~h   60 (110)
T 2csh_A           34 GLRPY-GCGVCG-KKFKMKHHLVGHMK-IH   60 (110)
T ss_dssp             CCCSE-ECTTTS-CEESSSHHHHHHHT-TT
T ss_pred             CCcCc-cCCCCC-cccCCHHHHHHHHH-Hc
Confidence            45678 888888 88888888888864 44

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=88.67  E-value=0.23  Score=36.86  Aligned_cols=31  Identities=13%  Similarity=-0.036  Sum_probs=25.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ...+| .|..|| ..|.+...|..|.+..|..+
T Consensus        22 ~~~~~-~C~~C~-~~f~~~~~L~~H~~~~H~~~   52 (155)
T 2rpc_A           22 AQLSR-PKKSCD-RTFSTMHELVTHVTMEHVGG   52 (155)
T ss_dssp             TCCSS-SCCCCC-CCBSSHHHHHHHHHTTTSCC
T ss_pred             hhccc-ccccCC-cccCCHHHHHHHHHhhcCCC
Confidence            34567 899999 99999999999998888654

>1dbq_A Purine repressor; transcription regulation, DNA-binding regulatory protein; 2.20A {Escherichia coli} SCOP: c.93.1.1 PDB: 1jhz_A

Probab=88.57  E-value=1.8  Score=34.49  Aligned_cols=69  Identities=10%  Similarity=0.006  Sum_probs=44.2

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHH-cCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATL-RCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARe-r~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .-...+.+.+-..++|.|++.+.+.+ ..++..+.+ .|+.+|+++..
T Consensus        27 ~gi~~~~~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgii~~~~~~~-~~~~~~l~~~~~iPvV~~~~~   96 (289)
T 1dbq_A           27 EAVEKNCFQKGYTLILGNAWNNL---EKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG   96 (289)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEEECSCCC-HHHHHHHHHTTTSCEEEEECS
T ss_pred             HHHHHHHHHcCCeEEEEcCCCCh---HHHHHHHHHHHhCCCCEEEEEeccCC-HHHHHHHHhccCCCEEEEccC
Confidence            36677778888888754433222   33333444444689999999876643 234455545 79999999875

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=88.21  E-value=0.18  Score=35.90  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=11.9

Q ss_pred             CCCcccccc--cCCCcccCchHHHHHH
Q 046085           29 AEPYVLVIV--EGDLRLYNNDKLVNHF   53 (230)
Q Consensus        29 ~epy~~C~V--CGdrkf~t~~kL~kHF   53 (230)
                      ..|| .|.+  || ..|.+...|..|.
T Consensus        60 ~~~~-~C~~~~C~-~~f~~~~~l~~H~   84 (124)
T 1ubd_C           60 EKPF-QCTFEGCG-KRFSLDFNLRTHV   84 (124)
T ss_dssp             CCCE-ECCSTTCC-CEESCHHHHHHHH
T ss_pred             CCCe-eCCCCCCc-CccCCHHHHHHHH
Confidence            3445 5544  55 5555555555554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=88.19  E-value=0.22  Score=32.63  Aligned_cols=26  Identities=19%  Similarity=0.258  Sum_probs=21.7

Q ss_pred             CCCCCcccccc--cCCCcccCchHHHHHHH
Q 046085           27 RPAEPYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        27 ~p~epy~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      ....|| .|.+  || ..|.+...|.+|.+
T Consensus        43 ~~~~~~-~C~~~~C~-k~f~~~~~l~~H~~   70 (72)
T 2epa_A           43 TGEKPF-SCSWKGCE-RRFARSDELSRHRR   70 (72)
T ss_dssp             SSSCSE-ECCCTTCC-CEESSHHHHHHHTT
T ss_pred             CCCCCc-cCCCCCCC-cccCCHHHHHhHhh
Confidence            346789 9976  99 99999999999953

>1tk9_A Phosphoheptose isomerase 1; lipopolysaccharide biosynthesis, structural genomics, NYSGXRC, LPC1_camje, PSI, protein structure initiative; 2.10A {Campylobacter jejuni} SCOP: c.80.1.3

Probab=87.79  E-value=0.5  Score=36.60  Aligned_cols=44  Identities=16%  Similarity=0.173  Sum_probs=36.6

Q ss_pred             CcceEEEEcC---CcchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          143 RFGCLVFVSD---DSDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       143 ~vdclvLVSD---DSDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      .=|+++++|-   ..+-..+++.|+++|++||.|-+.....|.+.||
T Consensus       110 ~~Dvvi~iS~sG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~L~~~ad  156 (188)
T 1tk9_A          110 EKDVLIGISTSGKSPNVLEALKKAKELNMLCLGLSGKGGGMMNKLCD  156 (188)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEEGGGTTHHHHCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCcchHHcCC
Confidence            4488888886   4567788899999999999998875678999999

>2j7j_A Transcription factor IIIA; zinc finger module, alternative initiation, nuclear protein, phosphorylation, hydrophobic core, zinc, RNA-binding; 1.65A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1un6_B 2hgh_A

Probab=87.79  E-value=0.31  Score=32.05  Aligned_cols=26  Identities=15%  Similarity=0.107  Sum_probs=19.6

Q ss_pred             Ccccc--cccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLV--IVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C--~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|  ..|| ..|.+...|..|.+.-+.
T Consensus         1 p~-~C~~~~C~-~~f~~~~~l~~H~~~h~~   28 (85)
T 2j7j_A            1 MY-VCHFENCG-KAFKKHNQLKVHQFSHTQ   28 (85)
T ss_dssp             CE-ECCSTTCC-CEESSHHHHHHHHHHHHT
T ss_pred             Cc-cCCCCCCC-cccCCHHHHHHHHHHhCC
Confidence            67 78  7788 888888888888765554

>2epa_A Krueppel-like factor 10; transforming growth factor-beta-inducible early growth response protein 1, TGFB-inducible early growth response protein 1; NMR {Homo sapiens}

Probab=87.49  E-value=0.19  Score=32.94  Aligned_cols=29  Identities=14%  Similarity=0.210  Sum_probs=24.1

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHHHHhHH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      ...|| .|..  || ..|.+...|..|.+ +|..
T Consensus        14 ~~~~~-~C~~~~C~-k~f~~~~~L~~H~~-~H~~   44 (72)
T 2epa_A           14 RIRSH-ICSHPGCG-KTYFKSSHLKAHTR-THTG   44 (72)
T ss_dssp             CCCCE-ECSSTTTC-CEESSHHHHHHHHH-HHSS
T ss_pred             ccCce-eCCCCCCc-cccCCHHHHHHHHH-hcCC
Confidence            45688 9998  99 99999999999985 5643

>2xbl_A Phosphoheptose isomerase; capsule; HET: M7P PGE PG4; 1.62A {Burkholderia pseudomallei} PDB: 2x3y_A

Probab=87.47  E-value=0.88  Score=35.45  Aligned_cols=44  Identities=14%  Similarity=0.157  Sum_probs=36.6

Q ss_pred             CcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          143 RFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       143 ~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      .=|+++++|-.   .+...+++.|+++|++||.|-+.....|.+.||
T Consensus       116 ~~d~vI~iS~SG~t~~~~~~~~~ak~~g~~vI~IT~~~~s~L~~~ad  162 (198)
T 2xbl_A          116 EGDVLIGYSTSGKSPNILAAFREAKAKGMTCVGFTGNRGGEMRELCD  162 (198)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECSCCCTHHHHCS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCeEEEEECCCCCcHHHhCC
Confidence            45788888754   456778899999999999999876678999999

>2ej4_A Zinc finger protein ZIC 3; ZF-C2H2 domain, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=86.96  E-value=0.46  Score=32.32  Aligned_cols=28  Identities=14%  Similarity=-0.008  Sum_probs=24.0

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .| .|..|| ..|.+...|..|.+..|.-+
T Consensus        25 ~~-~C~~C~-k~f~~~~~L~~H~~~~H~~~   52 (95)
T 2ej4_A           25 SR-PKKSCD-RTFSTMHELVTHVTMEHVGG   52 (95)
T ss_dssp             SS-SCCCCC-CCCSSHHHHHHHHHHTTTCC
T ss_pred             CC-cccccc-cccCCHHHHHHHHHHhccCC
Confidence            35 799999 99999999999988778654

>2jp9_A Wilms tumor 1; DNA binding, nucleic acid recognition, X-RAY; HET: DNA; NMR {Homo sapiens} PDB: 2jpa_A* 2prt_A*

Probab=86.86  E-value=0.37  Score=33.82  Aligned_cols=24  Identities=17%  Similarity=0.332  Sum_probs=14.7

Q ss_pred             CCCcccccc--cCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|.+  || ..|.+...|..|.+
T Consensus         4 ~~~~-~C~~~~C~-~~f~~~~~l~~H~~   29 (119)
T 2jp9_A            4 KRPF-MCAYPGCN-KRYFKLSHLQMHSR   29 (119)
T ss_dssp             SCCB-CCCSTTSC-CCBSCHHHHHHHHH
T ss_pred             Ceee-eCCCCCCc-chhCCHHHHHHHHH
Confidence            3456 6665  66 66666666666654

>3l8h_A Putative haloacid dehalogenase-like hydrolase; HAD superfamily, GMHB, D-glycero-D-manno-heptose-1, 7-bispho phosphatase; HET: FX1; 1.68A {Bordetella bronchiseptica}

Probab=86.75  E-value=3.2  Score=31.10  Aligned_cols=94  Identities=10%  Similarity=0.001  Sum_probs=58.2

Q ss_pred             chhhhhhhhcEEEEEccccch-------HHH-HHHHHHHHHHHhhcC--cceEEEE----cCCcc-----hHHHHHHHHH
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQ-------AAD-VLLRNYMVDMMDKRR--FGCLVFV----SDDSD-----FVEVLQEATL  165 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpq-------AAD-~AL~~~m~~~m~~r~--vdclvLV----SDDSD-----F~~lLr~ARe  165 (230)
                      .+-.+|++.|+.+-.+|..|.       ..+ .++...+...+...|  ++.++..    |++..     -..+...+++
T Consensus        34 ~~l~~L~~~g~~~~i~Tn~~~~~~~~~~~~~~~~~~~~~~~~l~~~g~~~~~~~~~~~~~~~~~~~~KP~~~~~~~~~~~  113 (179)
T 3l8h_A           34 QAIARLTQADWTVVLATNQSGLARGLFDTATLNAIHDKMHRALAQMGGVVDAIFMCPHGPDDGCACRKPLPGMYRDIARR  113 (179)
T ss_dssp             HHHHHHHHTTCEEEEEEECTTTTTTSSCHHHHHHHHHHHHHHHHHTTCCCCEEEEECCCTTSCCSSSTTSSHHHHHHHHH
T ss_pred             HHHHHHHHCCCEEEEEECCCccccCcCCHHHHHHHHHHHHHHHHhCCCceeEEEEcCCCCCCCCCCCCCCHHHHHHHHHH
Confidence            455789999999999999885       111 123345556666667  7776543    34432     2233344444


Q ss_pred             cCC---eEEEecCC-CCchhhhhhh----ccccccchHHHH
Q 046085          166 RCL---KTGVAGYM-NDGTLKRIAD----RLKWAYNSEVEK  198 (230)
Q Consensus       166 r~l---~TVVVGd~-~~~aL~r~AD----~leW~~~~e~e~  198 (230)
                      -|+   .+++|||+ +|-.-.+.|-    ++.|.+.++.+.
T Consensus       114 ~~~~~~~~~~vGD~~~Di~~a~~aG~~~i~v~~g~~~~~~~  154 (179)
T 3l8h_A          114 YDVDLAGVPAVGDSLRDLQAAAQAGCAPWLVQTGNGRKTLA  154 (179)
T ss_dssp             HTCCCTTCEEEESSHHHHHHHHHHTCEEEEESTTTHHHHHH
T ss_pred             cCCCHHHEEEECCCHHHHHHHHHCCCcEEEECCCCcchhhh
Confidence            555   59999998 5444555555    778887766544

>2rpc_A Zinc finger protein ZIC 3; ZF-C2H2, zinc finger protein of the cerebellum 3, disease mutation, DNA-binding, metal-binding, nucleus, polymorphism; NMR {Homo sapiens}

Probab=86.41  E-value=0.13  Score=38.29  Aligned_cols=22  Identities=18%  Similarity=0.227  Sum_probs=10.6

Q ss_pred             CCcccccc--cCCCcccCchHHHHHH
Q 046085           30 EPYVLVIV--EGDLRLYNNDKLVNHF   53 (230)
Q Consensus        30 epy~~C~V--CGdrkf~t~~kL~kHF   53 (230)
                      .|| .|.+  || ..|.+...|..|.
T Consensus        89 ~~~-~C~~~~C~-~~f~~~~~L~~H~  112 (155)
T 2rpc_A           89 KPF-PCPFPGCG-KIFARSENLKIHK  112 (155)
T ss_dssp             CSE-ECSCTTTC-CEESCHHHHHHHH
T ss_pred             Ccc-cCCcCCCC-CccCCHHHHHHHH
Confidence            344 4444  54 4444444454444

>1m3s_A Hypothetical protein YCKF; structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; 1.95A {Bacillus subtilis} SCOP: c.80.1.3 PDB: 1viv_A

Probab=85.96  E-value=1.6  Score=33.77  Aligned_cols=68  Identities=9%  Similarity=0.074  Sum_probs=49.0

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc---chHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS---DFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS---DF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|+.|..+++- .         + ..+  ..=|+++++|-.-   +...+++.|+++|+++|.|-+.....|.
T Consensus        55 ~~~~l~~~g~~~~~~~~~-~---------~-~~~--~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~  121 (186)
T 1m3s_A           55 FAMRLMHMGFNAHIVGEI-L---------T-PPL--AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIG  121 (186)
T ss_dssp             HHHHHHHTTCCEEETTST-T---------C-CCC--CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCeEEEeCcc-c---------c-cCC--CCCCEEEEEcCCCCcHHHHHHHHHHHHCCCEEEEEECCCCCchH
Confidence            445678899999887653 1         1 112  2336777777543   4566788999999999999997667899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       122 ~~ad  125 (186)
T 1m3s_A          122 KQAD  125 (186)
T ss_dssp             HHCS
T ss_pred             HhCC
Confidence            9999

>1vd4_A Transcription initiation factor IIE, alpha subunit; zinc finger; NMR {Homo sapiens} SCOP: g.41.3.1

Probab=85.94  E-value=0.11  Score=34.07  Aligned_cols=28  Identities=4%  Similarity=-0.091  Sum_probs=19.6

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      ....|| .|.+|| ..|.....|.    .+|.-|
T Consensus        10 ~~~k~~-~C~~C~-k~F~~~~~l~----~~H~~~   37 (62)
T 1vd4_A           10 TNRASF-KCPVCS-STFTDLEANQ----LFDPMT   37 (62)
T ss_dssp             CSSSEE-ECSSSC-CEEEHHHHHH----HEETTT
T ss_pred             CCCCCc-cCCCCC-chhccHHHhH----hhcCCC
Confidence            346789 999999 8887766664    556433

>3miz_A Putative transcriptional regulator protein, LACI family; LACL family, protein structure initiative II (PSI II), NYSGXRC, structural genomics; 1.91A {Rhizobium etli}

Probab=85.86  E-value=0.27  Score=39.91  Aligned_cols=68  Identities=9%  Similarity=-0.078  Sum_probs=49.0

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+.+.........   .....+.+.|..+++|.|++++.+.+-  .+..+.+.|+.+|+||..
T Consensus        34 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdGiIi~~~~~~~--~~~~~~~~~iPvV~~~~~  101 (301)
T 3miz_A           34 RGIQDWANANGKTILIANTGGSS---EREVEIWKMFQSHRIDGVLYVTMYRRI--VDPESGDVSIPTVMINCR  101 (301)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEEEEEEEEE--CCCCCTTCCCCEEEEEEE
T ss_pred             HHHHHHHHHCCCEEEEEeCCCCh---HHHHHHHHHHHhCCCCEEEEecCCccH--HHHHHHhCCCCEEEECCC
Confidence            35788899999999865433222   233445555557899999998865443  677788899999999865

>2i13_A AART; DNA binding, zinc finger, DNA binding protein-DNA complex; 1.96A {Mus musculus} SCOP: k.12.1.1 PDB: 1mey_C*

Probab=85.49  E-value=0.42  Score=36.71  Aligned_cols=28  Identities=18%  Similarity=0.175  Sum_probs=18.2

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ..|| .|.+|| ..|.+...|..|.+.-|.
T Consensus       103 ~~~~-~C~~C~-~~f~~~~~l~~H~~~h~~  130 (190)
T 2i13_A          103 EKPY-ACPECG-KSFSQLAHLRAHQRTHTG  130 (190)
T ss_dssp             CCCE-ECTTTC-CEESSHHHHHHHHHHHHC
T ss_pred             CCCC-cCCCCC-CccCCHHHHHHHHHHhCC
Confidence            4566 777777 677777777777665443

>2h0a_A TTHA0807, transcriptional regulator; repressor, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=85.30  E-value=0.33  Score=38.52  Aligned_cols=70  Identities=11%  Similarity=-0.054  Sum_probs=39.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMN  177 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~  177 (230)
                      .|+..++++.|+.+.......+..   -...+.+.+..+++|.|++.+.+.+ ...++.+++.|+.+|+++...
T Consensus        19 ~gi~~~~~~~g~~~~~~~~~~~~~---~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~~~~~~iPvV~~~~~~   88 (276)
T 2h0a_A           19 EGIEGVLLEQRYDLALFPILSLAR---LKRYLENTTLAYLTDGLILASYDLT-ERFEEGRLPTERPVVLVDAQN   88 (276)
T ss_dssp             HHHHHHHGGGTCEEEECCCCSCCC---CC---------CCCSEEEEESCCCC-------CCSCSSCEEEESSCC
T ss_pred             HHHHHHHHHCCCEEEEEeCCCchh---hHHHHHHHHHhCCCCEEEEecCCCC-HHHHHHHhhcCCCEEEEeccC
Confidence            467788888898887654332211   1112233333689999999876644 367778888999999998753

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=84.60  E-value=0.4  Score=36.83  Aligned_cols=24  Identities=25%  Similarity=0.169  Sum_probs=13.9

Q ss_pred             CCCcccccc--cCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      ..|| .|++  || ..|.+...|.+|.+
T Consensus       132 ~~~~-~C~~~~C~-k~F~~~~~L~~H~~  157 (190)
T 1tf6_A          132 QLPY-ECPHEGCD-KRFSLPSRLKRHEK  157 (190)
T ss_dssp             SCSS-BCCSSSCC-CBCSSHHHHHHHHT
T ss_pred             CCCc-cCCCCCCC-chhcCHHHHHHHHH
Confidence            4456 6655  66 66666666666653

>2i2w_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 1.95A {Escherichia coli} PDB: 2i22_A 1x94_A

Probab=84.35  E-value=0.98  Score=36.38  Aligned_cols=75  Identities=17%  Similarity=0.182  Sum_probs=49.2

Q ss_pred             hhhhcEEEEEccccchH----HH----HHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCC
Q 046085          110 LKRVWFWVRTMSDKLQA----AD----VLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMND  178 (230)
Q Consensus       110 LrRAGv~VrtV~dKpqA----AD----~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~  178 (230)
                      +.|.|+.+..++|....    .|    ..++......+  ..=|+++++|-.   .+-..+++.|+++|++||.|-+...
T Consensus        92 ~~~~g~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~~--~~~DvvI~iS~SG~t~~~i~~~~~ak~~G~~vIaIT~~~~  169 (212)
T 2i2w_A           92 ENRPGYPAIAISDVSHISCVGNDFGFNDIFSRYVEAVG--REGDVLLGISTSGNSANVIKAIAAAREKGMKVITLTGKDG  169 (212)
T ss_dssp             TTSSSCSEEECCCTTCGGGGSCCCSCSSHHHHHHHHHC--CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEEETTC
T ss_pred             ccCCCCeEEecCChHHhhHhhccCCHHHHHHHHHHhcC--CCCCEEEEEECCCCCHHHHHHHHHHHHCCCeEEEEECCCC
Confidence            45688888877633211    00    01122222223  245778888753   4567788999999999999998766


Q ss_pred             chhhhhhh
Q 046085          179 GTLKRIAD  186 (230)
Q Consensus       179 ~aL~r~AD  186 (230)
                      ..|.+.||
T Consensus       170 s~La~~aD  177 (212)
T 2i2w_A          170 GKMAGTAD  177 (212)
T ss_dssp             GGGTTCSS
T ss_pred             CchHHhCC
Confidence            78999999

>3hs3_A Ribose operon repressor; PSI-II, NYSGXRC, periplasmic binding protein, structural genomics, protein structure initiative; 1.60A {Lactobacillus acidophilus}

Probab=84.32  E-value=0.53  Score=37.99  Aligned_cols=64  Identities=2%  Similarity=-0.101  Sum_probs=45.5

Q ss_pred             CchhhhhhhhcEE-EEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFW-VRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~-VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..++++.|+. +.......+.   .....+.+.+..+++|.|++++      ..+..+.+.|+.+|+++..
T Consensus        30 ~gi~~~a~~~g~~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiIi~~------~~~~~~~~~~iPvV~~~~~   94 (277)
T 3hs3_A           30 DGIQEVIQKEGYTALISFSTNSDV---KKYQNAIINFENNNVDGIITSA------FTIPPNFHLNTPLVMYDSA   94 (277)
T ss_dssp             HHHHHHHHHTTCEEEEEECSSCCH---HHHHHHHHHHHHTTCSEEEEEC------CCCCTTCCCSSCEEEESCC
T ss_pred             HHHHHHHHHCCCCEEEEEeCCCCh---HHHHHHHHHHHhCCCCEEEEcc------hHHHHHHhCCCCEEEEccc
Confidence            4677889999999 7655444333   3334445555578999999998      2355677889999999876

>2wbs_A Krueppel-like factor 4; transcription-DNA complex, DNA-binding, transcription, metal-binding, DNA, protein, nucleus, activator; 1.70A {Mus musculus} PDB: 2wbu_A

Probab=84.03  E-value=0.38  Score=32.10  Aligned_cols=25  Identities=12%  Similarity=0.086  Sum_probs=15.2

Q ss_pred             CCCCcccccc--cCCCcccCchHHHHHHH
Q 046085           28 PAEPYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        28 p~epy~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      .+.|| .|.+  || ..|.+...|..|.+
T Consensus         2 ~~~~~-~C~~~~C~-~~f~~~~~l~~H~~   28 (89)
T 2wbs_A            2 RTATH-TCDYAGCG-KTYTKSSHLKAHLR   28 (89)
T ss_dssp             -CCCE-ECCSTTTC-CEESSHHHHHHHHT
T ss_pred             CCCCe-eCCCCCCC-CcCCCHHHHHHHHH
Confidence            34556 6666  66 66666666666654

>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=83.91  E-value=0.57  Score=32.75  Aligned_cols=24  Identities=8%  Similarity=0.011  Sum_probs=22.2

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      ..+| .|+-|| ..|.--+.|.+|.|
T Consensus        10 ~~~~-~CPrCn-~~f~~~~sLr~Hmk   33 (49)
T 2e72_A           10 GGRK-ICPRCN-AQFRVTEALRGHMC   33 (49)
T ss_dssp             SSCC-CCTTTC-CCCSSHHHHHHHHH
T ss_pred             CCce-eCCccc-ccccchHHHHhhhh
Confidence            3688 999999 99999999999988

>1jeo_A MJ1247, hypothetical protein MJ1247; RUMP pathway, phosphosugar, 3-hexulose-6-phosphate isomerase structural genomics; HET: CME CIT; 2.00A {Methanocaldococcus jannaschii} SCOP: c.80.1.3

Probab=83.90  E-value=1.4  Score=34.00  Aligned_cols=67  Identities=12%  Similarity=0.084  Sum_probs=48.3

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc---chHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS---DFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS---DF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|+.|..+++- .         + ..+  ..=|+++++|-.-   +...+++.|+++|+++|.|-+.... |.
T Consensus        58 ~~~~l~~~g~~~~~~~~~-~---------~-~~~--~~~d~vi~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s-l~  123 (180)
T 1jeo_A           58 FAMRLMHLGFKSYFVGET-T---------T-PSY--EKDDLLILISGSGRTESVLTVAKKAKNINNNIIAIVCECGN-VV  123 (180)
T ss_dssp             HHHHHHHTTCCEEETTST-T---------C-CCC--CTTCEEEEEESSSCCHHHHHHHHHHHTTCSCEEEEESSCCG-GG
T ss_pred             HHHHHHHcCCeEEEeCCC-c---------c-ccC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCcEEEEeCCCCh-HH
Confidence            345677899999887653 1         0 112  2347788887543   4567788999999999999987556 99


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       124 ~~ad  127 (180)
T 1jeo_A          124 EFAD  127 (180)
T ss_dssp             GGCS
T ss_pred             HhCC
Confidence            9999

>3mmz_A Putative HAD family hydrolase; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 1.84A {Streptomyces avermitilis}

Probab=83.64  E-value=2.6  Score=32.66  Aligned_cols=72  Identities=13%  Similarity=-0.008  Sum_probs=46.9

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcC---CeEEEecCC-CCchh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRC---LKTGVAGYM-NDGTL  181 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~---l~TVVVGd~-~~~aL  181 (230)
                      +-..|+.+|+.+-.+|.++...    ...+   +...|++  ++-+.-+.-..+.+.+.+-|   -.+++|||+ +|-..
T Consensus        47 ~l~~L~~~g~~~~i~T~~~~~~----~~~~---~~~lgi~--~~~~~~~k~~~l~~~~~~~~~~~~~~~~vGD~~nD~~~  117 (176)
T 3mmz_A           47 GIAALRKSGLTMLILSTEQNPV----VAAR---ARKLKIP--VLHGIDRKDLALKQWCEEQGIAPERVLYVGNDVNDLPC  117 (176)
T ss_dssp             HHHHHHHTTCEEEEEESSCCHH----HHHH---HHHHTCC--EEESCSCHHHHHHHHHHHHTCCGGGEEEEECSGGGHHH
T ss_pred             HHHHHHHCCCeEEEEECcChHH----HHHH---HHHcCCe--eEeCCCChHHHHHHHHHHcCCCHHHEEEEcCCHHHHHH
Confidence            5678999999999999888751    1222   3344777  33444444444444444455   468999999 77777


Q ss_pred             hhhhh
Q 046085          182 KRIAD  186 (230)
Q Consensus       182 ~r~AD  186 (230)
                      .+.|+
T Consensus       118 ~~~ag  122 (176)
T 3mmz_A          118 FALVG  122 (176)
T ss_dssp             HHHSS
T ss_pred             HHHCC
Confidence            77777

>2qv7_A Diacylglycerol kinase DGKB; alpha-beta domain 1, beta sandwich domain 2, protein-ADP COM transferase; HET: ADP; 2.30A {Staphylococcus aureus} SCOP: e.52.1.2 PDB: 2qvl_A

Probab=83.26  E-value=1.6  Score=37.87  Aligned_cols=73  Identities=18%  Similarity=0.125  Sum_probs=32.2

Q ss_pred             hhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          111 KRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       111 rRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      ++.+|.+++.+.+-++..  +..++...+...++++.+..+... +...+.+.+-..+...||+..+ ||++..+++
T Consensus        25 ~~i~vI~NP~sg~~~~~~--~~~~i~~~L~~~g~~~~~~~t~~~~~a~~~~~~~~~~~~d~vvv~GG-DGTv~~v~~   98 (337)
T 2qv7_A           25 KRARIIYNPTSGKEQFKR--ELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGTLNEVVN   98 (337)
T ss_dssp             EEEEEEECTTSTTSCHHH--HHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHHHHHHHH
T ss_pred             ceEEEEECCCCCCCchHH--HHHHHHHHHHHcCCeEEEEEecCcchHHHHHHHHhhcCCCEEEEEcC-chHHHHHHH
Confidence            445555554444333321  224444445445555555444432 3334444444444444444333 344555444

>1x92_A APC5045, phosphoheptose isomerase; midwest centre for structural genomics, SIS domain, A/B protein, lipopolysaccharide biosynthesis, PSI; HET: M7P; 2.30A {Pseudomonas aeruginosa} SCOP: c.80.1.3 PDB: 3bjz_A

Probab=82.83  E-value=1.7  Score=34.20  Aligned_cols=44  Identities=16%  Similarity=0.183  Sum_probs=36.2

Q ss_pred             CcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhh---hh
Q 046085          143 RFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRI---AD  186 (230)
Q Consensus       143 ~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~---AD  186 (230)
                      .=|+++++|-.   .+...+++.|+++|++||.|-+.....|.+.   ||
T Consensus       113 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La~~~~~ad  162 (199)
T 1x92_A          113 PGDVLLAISTSGNSANVIQAIQAAHDREMLVVALTGRDGGGMASLLLPED  162 (199)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHHHCCTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEECCCCCcHHhccccCC
Confidence            34777777753   4567789999999999999998867789999   99

>1ubd_C Protein (YY1 zinc finger domain); transcription initiation, initiator element, zinc finger protein, DNA- protein recognition; HET: DNA; 2.50A {Homo sapiens} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1znm_A*

Probab=82.64  E-value=0.46  Score=33.77  Aligned_cols=21  Identities=10%  Similarity=0.007  Sum_probs=10.5

Q ss_pred             Cccccc--ccCCCcccCchHHHHHH
Q 046085           31 PYVLVI--VEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        31 py~~C~--VCGdrkf~t~~kL~kHF   53 (230)
                      || .|+  .|| ..|.+...|.+|.
T Consensus         5 ~~-~C~~~~C~-~~f~~~~~l~~H~   27 (124)
T 1ubd_C            5 TI-ACPHKGCT-KMFRDNSAMRKHL   27 (124)
T ss_dssp             CE-ECCSTTCC-CEESSHHHHHHHH
T ss_pred             cc-cCCCCCCc-CccCCHHHHHHHH
Confidence            44 454  455 5555555555553

>1tf6_A Protein (transcription factor IIIA); complex (transcription regulation/DNA), RNA polymerase III, transcription initiation, zinc finger protein; HET: DNA; 3.10A {Xenopus laevis} SCOP: g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 g.37.1.1 PDB: 1tf3_A

Probab=82.59  E-value=0.51  Score=36.25  Aligned_cols=27  Identities=19%  Similarity=0.358  Sum_probs=15.0

Q ss_pred             CCCccccc--ccCCCcccCchHHHHHHHHHh
Q 046085           29 AEPYVLVI--VEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        29 ~epy~~C~--VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ..|| .|.  .|| ..|.+...|.+|.+..|
T Consensus        70 ~~~~-~C~~~~C~-~~f~~~~~l~~H~~~~h   98 (190)
T 1tf6_A           70 EKNF-TCDSDGCD-LRFTTKANMKKHFNRFH   98 (190)
T ss_dssp             CCCE-ECCSSSCC-CEESCHHHHHHHHHTTS
T ss_pred             CCce-eCCCCCCC-CccCCHHHHHHHHHHhc
Confidence            3455 555  555 55555555555555555

>1vim_A Hypothetical protein AF1796; structural genomics, unknown function; 1.36A {Archaeoglobus fulgidus} SCOP: c.80.1.3

Probab=82.58  E-value=1.6  Score=34.87  Aligned_cols=68  Identities=18%  Similarity=0.183  Sum_probs=50.1

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|+.|..++|- .+          ..+  ..=|+++++|-.   .+...+++.|+++|+++|.|-+.....|.
T Consensus        65 ~~~~l~~~g~~~~~~~~~-~~----------~~~--~~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~La  131 (200)
T 1vim_A           65 FAMRLMHLGYTVYVVGET-VT----------PRI--TDQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLA  131 (200)
T ss_dssp             HHHHHHHTTCCEEETTST-TC----------CCC--CTTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCeEEEeCCc-cc----------cCC--CCCCEEEEEeCCCCcHHHHHHHHHHHHCCCeEEEEECCCCChHH
Confidence            445677889999887652 11          012  234778888754   45677889999999999999998667899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       132 ~~ad  135 (200)
T 1vim_A          132 KMAD  135 (200)
T ss_dssp             HHCS
T ss_pred             HhCC
Confidence            9999

>1qpz_A PURA, protein (purine nucleotide synthesis repressor); transcription regulation, DNA-binding, purine biosynthesis; HET: DNA HPA; 2.50A {Escherichia coli} SCOP: a.35.1.5 c.93.1.1 PDB: 1bdi_A* 1qp0_A* 1qp4_A* 1pnr_A* 1wet_A* 1zay_A* 1vpw_A* 2pue_A* 2puf_A* 2pug_A* 1bdh_A* 1qp7_A* 1qqa_A* 1qqb_A* 2puc_A* 2pua_A* 2pub_A* 2pud_A* 1jfs_A* 1jh9_A* ...

Probab=82.19  E-value=4.2  Score=33.80  Aligned_cols=69  Identities=10%  Similarity=0.006  Sum_probs=43.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHH-cCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATL-RCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARe-r~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+.......+.   .-...+.+.|..+++|.|++++.+.+ ..++..+.+ .|+.+|+++..
T Consensus        78 ~gi~~~a~~~g~~~~~~~~~~~~---~~~~~~~~~l~~~~vdgiI~~~~~~~-~~~~~~l~~~~~iPvV~~~~~  147 (340)
T 1qpz_A           78 EAVEKNCFQKGYTLILGNAWNNL---EKQRAYLSMMAQKRVDGLLVMCSEYP-EPLLAMLEEYRHIPMVVMDWG  147 (340)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEECCSCCC-HHHHHHHHTTTTSCEEEEEES
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHcCCCCEEEEeCCCCC-hHHHHHHHhhCCCCEEEEecc
Confidence            47778888899988754332222   22333344444689999999876543 123444444 79999999865

>1zw8_A Zinc-responsive transcriptional regulator ZAP1; interacting C2H2 zinc fingers, beta-BETA-alpha, solution structure; NMR {Saccharomyces cerevisiae}

Probab=82.17  E-value=1.4  Score=30.34  Aligned_cols=40  Identities=23%  Similarity=0.185  Sum_probs=30.0

Q ss_pred             HHHHHHhcCccCC---C-CCccccc--ccCCCcccCchHHHHHHHHHh
Q 046085           16 LFNQLEIKGVIRP---A-EPYVLVI--VEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        16 ~l~~le~~g~i~p---~-epy~~C~--VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      +...+++..+-.+   + +|| .|.  -|+ +.++...+|++|.+.-|
T Consensus        19 l~~Hv~~~Hv~~~~~~~~~~~-~C~W~~C~-~~~~~~~~L~~Hir~~H   64 (64)
T 1zw8_A           19 LQRHLLKDHVSQDFKHPMEPL-ACNWEDCD-FLGDDTASIVNHINAQH   64 (64)
T ss_dssp             HHHHHHHHSCCCCCCCSSCCE-ECCCSSCC-CEESSHHHHHHHHHHHC
T ss_pred             HHHHHHhhccCcccCCCCCCC-EeeCCCCc-CCCCChHHHHhhccccC
Confidence            3445666665554   3 488 997  999 99999999999998765

>2xhz_A KDSD, YRBH, arabinose 5-phosphate isomerase; lipopolysaccharide biogenesis; 2.60A {Escherichia coli}

Probab=82.17  E-value=1.7  Score=33.42  Aligned_cols=73  Identities=7%  Similarity=0.007  Sum_probs=49.6

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc---chHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS---DFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS---DF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|..+..+.+--.     +...+ ..+  ..=|+++++|-.-   +...+++.|+++|+++|.|-+.....|.
T Consensus        67 ~~~~l~~~g~~~~~~~~~~~-----~~~~~-~~~--~~~d~vI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~la  138 (183)
T 2xhz_A           67 MAATFASTGTPSFFVHPGEA-----AHGDL-GMV--TPQDVVIAISNSGESSEITALIPVLKRLHVPLICITGRPESSMA  138 (183)
T ss_dssp             HHHHHHTTTCCEEECCTTHH-----HHHTS-TTC--CTTCEEEEECSSSCCHHHHHHHHHHHTTTCCEEEEESCTTSHHH
T ss_pred             HHHHHHhcCceEEEeCchHH-----hhhhh-ccC--CCCCEEEEEeCCCCCHHHHHHHHHHHHCCCCEEEEECCCCChhH
Confidence            45567788999987764211     11100 111  2347788887543   4566788899999999999987667899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       139 ~~ad  142 (183)
T 2xhz_A          139 RAAD  142 (183)
T ss_dssp             HHSS
T ss_pred             HhCC
Confidence            9999

>2ctu_A Zinc finger protein 483; zinc finger domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=82.15  E-value=0.087  Score=33.94  Aligned_cols=27  Identities=4%  Similarity=-0.199  Sum_probs=21.7

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      ..|| .|.+|| ..|.+...|..|.+ +|.
T Consensus        37 ~~~~-~C~~C~-~~f~~~~~l~~H~~-~H~   63 (73)
T 2ctu_A           37 RKTP-MCEKCR-KDSCQEAALNKDEG-NES   63 (73)
T ss_dssp             SSSC-CCHHHH-HTCSCCCSSCCCSS-CCC
T ss_pred             CCCC-CCCCCC-hhhcCHHHHHHHHH-hhc
Confidence            5688 999999 99999999998853 353

>3trj_A Phosphoheptose isomerase; lipopolysaccharide biosynthesis; 2.80A {Francisella tularensis subsp}

Probab=82.10  E-value=1.6  Score=35.34  Aligned_cols=44  Identities=16%  Similarity=0.170  Sum_probs=37.2

Q ss_pred             CcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhhh---h
Q 046085          143 RFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRIA---D  186 (230)
Q Consensus       143 ~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~A---D  186 (230)
                      .=|+++.+|-.   .+-..+++.|+++|++||.|-+.....|.+.|   |
T Consensus       114 ~~Dvvi~iS~SG~t~~~~~~~~~ak~~g~~vi~iT~~~~s~la~~a~~~d  163 (201)
T 3trj_A          114 EDDILLVITTSGDSENILSAVEEAHDLEMKVIALTGGSGGALQNMYNTDD  163 (201)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEEETTCCGGGGTCCTTC
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCcEEEEECCCCCHHHHhhccCC
Confidence            45888888864   56778899999999999999887667999999   9

>3fxa_A SIS domain protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.60A {Listeria monocytogenes str}

Probab=81.49  E-value=1.3  Score=35.07  Aligned_cols=73  Identities=11%  Similarity=0.111  Sum_probs=49.2

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc---chHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS---DFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS---DF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|+.|..+++.    +  ........+  ..=|+++++|-.-   +...+++.|+++|+++|.|-+.....|.
T Consensus        63 ~~~~l~~~g~~~~~~~~~----~--~~~~~~~~~--~~~dvvI~iS~sG~t~~~~~~~~~ak~~g~~vi~IT~~~~s~l~  134 (201)
T 3fxa_A           63 LVHSFNCIERPAVFLTPS----D--AVHGTLGVL--QKEDILILISKGGNTGELLNLIPACKTKGSTLIGVTENPDSVIA  134 (201)
T ss_dssp             HHHHHHHTTCCEEECCHH----H--HTTTGGGGC--CTTCEEEEECSSSCCHHHHTTHHHHHHHTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhcCCcEEEeCch----H--HHhhhhhcC--CCCCEEEEEeCCCCCHHHHHHHHHHHHcCCeEEEEECCCCChhH
Confidence            344678889999877531    1  000000112  1237777777643   4556779999999999999998667899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       135 ~~ad  138 (201)
T 3fxa_A          135 KEAD  138 (201)
T ss_dssp             HHCS
T ss_pred             HhCC
Confidence            9999

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=81.39  E-value=4.5  Score=27.92  Aligned_cols=72  Identities=14%  Similarity=-0.010  Sum_probs=48.8

Q ss_pred             CCchhhhhhhhc-EEEEEccccchHHHHHH-------------HHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCC
Q 046085          103 GYSLVVKLKRVW-FWVRTMSDKLQAADVLL-------------RNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCL  168 (230)
Q Consensus       103 gygLa~eLrRAG-v~VrtV~dKpqAAD~AL-------------~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l  168 (230)
                      |..++..|.+.| +.|..+...|+.++...             ...+.+.+  .++|.++..........++..+.+.|+
T Consensus        17 G~~~~~~l~~~g~~~v~~~~r~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~--~~~d~vi~~~~~~~~~~~~~~~~~~g~   94 (118)
T 3ic5_A           17 GQMIAALLKTSSNYSVTVADHDLAALAVLNRMGVATKQVDAKDEAGLAKAL--GGFDAVISAAPFFLTPIIAKAAKAAGA   94 (118)
T ss_dssp             HHHHHHHHHHCSSEEEEEEESCHHHHHHHHTTTCEEEECCTTCHHHHHHHT--TTCSEEEECSCGGGHHHHHHHHHHTTC
T ss_pred             HHHHHHHHHhCCCceEEEEeCCHHHHHHHHhCCCcEEEecCCCHHHHHHHH--cCCCEEEECCCchhhHHHHHHHHHhCC
Confidence            356788888889 77776665555443322             12333444  378888887766667788888888999


Q ss_pred             eEEEecCC
Q 046085          169 KTGVAGYM  176 (230)
Q Consensus       169 ~TVVVGd~  176 (230)
                      +.+.++..
T Consensus        95 ~~~~~~~~  102 (118)
T 3ic5_A           95 HYFDLTED  102 (118)
T ss_dssp             EEECCCSC
T ss_pred             CEEEecCc
Confidence            88877764

>2yva_A DNAA initiator-associating protein DIAA; intermolecular disulfide bonding, putative phosphosugar BIND protein, DNAA binding protein; 1.85A {Escherichia coli}

Probab=81.22  E-value=2  Score=33.50  Aligned_cols=44  Identities=20%  Similarity=0.232  Sum_probs=35.6

Q ss_pred             CcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhhhh---hh
Q 046085          143 RFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLKRI---AD  186 (230)
Q Consensus       143 ~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~r~---AD  186 (230)
                      .=|+++++|-.   .+-..+++.|+++|++||.|-+.....|.+.   ||
T Consensus       109 ~~DvvI~iS~SG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~la~~~~~ad  158 (196)
T 2yva_A          109 AGDVLLAISTRGNSRDIVKAVEAAVTRDMTIVALTGYDGGELAGLLGPQD  158 (196)
T ss_dssp             TTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEECTTCHHHHTTCCTTS
T ss_pred             CCCEEEEEeCCCCCHHHHHHHHHHHHCCCEEEEEeCCCCchhhhcccCCC
Confidence            44777777754   4567788999999999999998866789999   88

>1pea_A Amidase operon; gene regulator, receptor, binding protein; 2.10A {Pseudomonas aeruginosa} SCOP: c.93.1.1 PDB: 1qo0_A 1qnl_A

Probab=80.72  E-value=2.3  Score=35.81  Aligned_cols=68  Identities=9%  Similarity=-0.041  Sum_probs=44.0

Q ss_pred             hhhhhhhhcEEEE---EccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCe---EEEecCC
Q 046085          106 LVVKLKRVWFWVR---TMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLK---TGVAGYM  176 (230)
Q Consensus       106 La~eLrRAGv~Vr---tV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~---TVVVGd~  176 (230)
                      +...|+++|+.|.   .++..+...|..  ..+.+++ +.+.+.|++.+++.+...+++.+++.|++   ..++|..
T Consensus       160 ~~~~l~~~G~~v~~~~~~~~~~~~~d~~--~~~~~l~-~~~pdaI~~~~~~~~a~~~~~~~~~~G~~~~~~~~~~~~  233 (385)
T 1pea_A          160 MRHLYRQHGGTVLEEIYIPLYPSDDDLQ--RAVERIY-QARADVVFSTVVGTGTAELYRAIARRYGDGRRPPIASLT  233 (385)
T ss_dssp             HHHHHHHTTCEEEEEEEECSSCCHHHHH--HHHHHHH-HHTCSEEEEECCTHHHHHHHHHHHHHHCSSCCCCEEESS
T ss_pred             HHHHHHHcCCEEEEEEeecCCCCcchHH--HHHHHHH-HCCCCEEEEecccccHHHHHHHHHHcCCCcCCceEEecc
Confidence            3455666676543   233222344432  3344444 35899999988888999999999999998   4456654

>2ebt_A Krueppel-like factor 5; C2H2-type zinc-finger, metal BIND, transcription factor, kruppel-like factor, GC-box promoter elements, structural genomics; NMR {Homo sapiens}

Probab=80.25  E-value=1  Score=30.65  Aligned_cols=26  Identities=8%  Similarity=-0.058  Sum_probs=17.8

Q ss_pred             CCCCCcccccc--cCCCcccCchHHHHHHH
Q 046085           27 RPAEPYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        27 ~p~epy~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      .+..|| .|.+  || ..|.+...|.+|.+
T Consensus        11 ~~~~~~-~C~~~~C~-~~f~~~~~l~~H~~   38 (100)
T 2ebt_A           11 EKRRIH-YCDYPGCT-KVYTKSSHLKAHLR   38 (100)
T ss_dssp             CSCCCE-ECCSSSCC-CEESCHHHHHHHHH
T ss_pred             ccCcce-EcCCCCCC-CcccCHHHHHHHHH
Confidence            344566 7776  77 77777777777765

>2wm8_A MDP-1, magnesium-dependent phosphatase 1; haloacid dehalogenase, protein phosphatase, hydrolase, magne metal-binding; 1.75A {Homo sapiens} PDB: 1u7o_A 1u7p_A

Probab=80.06  E-value=8.4  Score=29.44  Aligned_cols=83  Identities=10%  Similarity=-0.058  Sum_probs=48.9

Q ss_pred             hhhhhhhhcEEEEEccccch--HHHHHHHHHHHHHHhhcC----cceEEEEcCCcchHHHHHHHHHcCC---eEEEecCC
Q 046085          106 LVVKLKRVWFWVRTMSDKLQ--AADVLLRNYMVDMMDKRR----FGCLVFVSDDSDFVEVLQEATLRCL---KTGVAGYM  176 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpq--AAD~AL~~~m~~~m~~r~----vdclvLVSDDSDF~~lLr~ARer~l---~TVVVGd~  176 (230)
                      +-..|+..|+.+-.+|..+.  .+...|        ...+    ++.++. +..++-..+...+++-|+   .+++|||.
T Consensus        76 ~L~~L~~~G~~v~ivT~~~~~~~~~~~l--------~~~gl~~~f~~~~~-~~~~k~~~~~~~~~~~~~~~~~~~~igD~  146 (187)
T 2wm8_A           76 VLKRLQSLGVPGAAASRTSEIEGANQLL--------ELFDLFRYFVHREI-YPGSKITHFERLQQKTGIPFSQMIFFDDE  146 (187)
T ss_dssp             HHHHHHHHTCCEEEEECCSCHHHHHHHH--------HHTTCTTTEEEEEE-SSSCHHHHHHHHHHHHCCCGGGEEEEESC
T ss_pred             HHHHHHHCCceEEEEeCCCChHHHHHHH--------HHcCcHhhcceeEE-EeCchHHHHHHHHHHcCCChHHEEEEeCC
Confidence            45678888999988998872  322222        2223    344433 344454445555566676   48999998


Q ss_pred             -CCchhhhhhh----ccccccchHHH
Q 046085          177 -NDGTLKRIAD----RLKWAYNSEVE  197 (230)
Q Consensus       177 -~~~aL~r~AD----~leW~~~~e~e  197 (230)
                       ++-.-.+.|.    ++.|.+.++.-
T Consensus       147 ~~Di~~a~~aG~~~i~v~~g~~~~~~  172 (187)
T 2wm8_A          147 RRNIVDVSKLGVTCIHIQNGMNLQTL  172 (187)
T ss_dssp             HHHHHHHHTTTCEEEECSSSCCHHHH
T ss_pred             ccChHHHHHcCCEEEEECCCCChHHH
Confidence             3223344444    67888876553

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	230
d2ct1a2	36	Transcriptional repressor CTCF {Human (Homo sapien	97.39
d2epsa1	39	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	97.25
d1srka_	35	Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musc	96.92
d2adra1	29	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.79
d1a1ia2	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	96.72
d1x6ea1	33	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	96.67
d1p7aa_	37	Kruppel-like factor 3, Bklf {Mouse (Mus musculus)	96.44
d1sp1a_	29	Transcription factor sp1 {Human (Homo sapiens) [Ta	96.38
d1x6ha2	36	Transcriptional repressor CTCF {Human (Homo sapien	96.18
d2adra2	31	ADR1 {Synthetic, based on Saccharomyces cerevisiae	96.18
d1zfda_	32	SWI5 zinc-finger domains {Baker's yeast (Saccharom	95.98
d1ubdc3	30	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	95.95
d2cota2	38	Zinc finger and SCAN domain-containing protein 16,	95.7
d1a1ia3	28	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	95.6
d2glia3	30	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	95.59
d1a1ia1	29	ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}	95.2
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	95.18
d1x6ea2	26	Zinc finger protein 24 {Human (Homo sapiens) [TaxI	95.15
d1dbqa_	282	Purine repressor (PurR), C-terminal domain {Escher	95.03
d1klra_	30	ZFY {Human (Homo sapiens) [TaxId: 9606]}	94.92
d1sp2a_	31	Transcription factor sp1 {Human (Homo sapiens) [Ta	94.91
d2glia5	29	Five-finger GLI1 {Human (Homo sapiens) [TaxId: 960	94.81
d1ubdc4	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	94.79
d1bboa1	28	Enhancer binding protein {Human (Homo sapiens) [Ta	94.63
d2csha1	53	Zinc finger protein 297b {Human (Homo sapiens) [Ta	94.01
d2dria_	271	D-ribose-binding protein {Escherichia coli, strain	93.88
d2epqa1	32	PATZ1 {Human (Homo sapiens) [TaxId: 9606]}	93.47
d1ncsa_	47	SWI5 zinc-finger domains {Baker's yeast (Saccharom	92.89
d1jyea_	271	Lac-repressor (lacR) core (C-terminal domain) {Esc	92.77
d1zr9a1	67	Zinc finger protein 593, ZNF593 {Human (Homo sapie	92.52
d8abpa_	305	L-arabinose-binding protein {Escherichia coli [Tax	92.41
d1njqa_	37	SUPERMAN zinc finger domain {Thale cress (Arabidop	91.82
d1tjya_	316	AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370	90.8
d1bboa2	29	Enhancer binding protein {Human (Homo sapiens) [Ta	90.43
d1guda_	288	D-allose-binding protein {Escherichia coli [TaxId:	89.52
d1ubdc2	28	Ying-yang 1 (yy1, zinc finger domain) {Human (Homo	88.99
d2fvya1	305	Galactose/glucose-binding protein {Escherichia col	88.06
d2feaa1	226	2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate	87.75
d2csha2	44	Zinc finger protein 297b {Human (Homo sapiens) [Ta	87.37
d2dmda2	26	Zinc finger protein 64, ZFP68 {Human (Homo sapiens	87.07
d2bona1	295	Lipid kinase YegS {Escherichia coli [TaxId: 562]}	86.46
d1yuja_	54	GAGA factor {Drosophila melanogaster [TaxId: 7227]	85.49
d2dlka2	36	Zinc finger protein 692, ZNF692 {Human (Homo sapie	84.94
d1jx6a_	338	Quorum-sensing signal (autoinducer-2) binding prot	83.29
d1m3sa_	186	Hypothetical protein YckF {Bacillus subtilis [TaxI	82.83
d2nzug1	275	Glucose-resistance amylase regulator CcpA, C-termi	82.6
d2dlqa1	26	GLI-Krueppel family member HKR3 {Mouse (Mus muscul	82.08
d2qv7a1	312	Diacylglycerol kinase DgkB {Staphylococcus aureus	81.17
d1vima_	192	Hypothetical protein AF1796 {Archaeon Archaeoglobu	80.97
d1r8ja2	135	N-terminal domain of the circadian clock protein K	80.9
d1byka_	255	Trehalose repressor, C-terminal domain {Escherichi	80.5
d1u7pa_	164	Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mu	80.49

>d2ct1a2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=2.2e-05  Score=49.28  Aligned_cols=31  Identities=19%  Similarity=0.284  Sum_probs=27.9

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      +.+-|| .|.+|| ..|....+|++|.+..|..
T Consensus         4 TgekP~-~C~~C~-k~F~~~~~L~~H~~~~H~~   34 (36)
T d2ct1a2           4 SGEKPY-ECYICH-ARFTQSGTMKMHILQKHTE   34 (36)
T ss_dssp             SCCCSE-ECTTTC-CEESCHHHHHHHHHHHSSS
T ss_pred             CCCCCE-eCCCCc-ccccchHHHHHHcccccCC
Confidence            346799 999999 9999999999999999864

>d2epsa1 g.37.1.1 (A:408-446) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.25  E-value=2.2e-05  Score=50.33  Aligned_cols=31  Identities=32%  Similarity=0.554  Sum_probs=28.7

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHhHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      .-|| .|..|| ..|.....|.+|-+.+|..|+
T Consensus         3 ~Kpy-~C~~Cg-k~F~~~~~L~~H~r~~Ht~ek   33 (39)
T d2epsa1           3 GKPY-ICQSCG-KGFSRPDHLNGHIKQVHTSER   33 (39)
T ss_dssp             SCCE-ECSSSC-CEESSHHHHHHHHHHTSCCCC
T ss_pred             CCCc-cCCCCC-CCcCChHHhhccCcCccCCCc
Confidence            4699 999999 999999999999999998775

>d1srka_ g.37.1.1 (A:) Zinc finger protein ZFPM1 (FOG-1) {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein ZFPM1 (FOG-1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.92  E-value=0.00016  Score=45.24  Aligned_cols=28  Identities=14%  Similarity=0.295  Sum_probs=24.7

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      -+-|| .|.+|| ..|.....|.+|.+ +|.
T Consensus         4 GekPy-~C~~C~-k~F~~~~~L~~H~r-~Ht   31 (35)
T d1srka_           4 GKRPF-VCRICL-SAFTTKANCARHLK-VHT   31 (35)
T ss_dssp             CCSCE-ECSSSC-CEESSHHHHHHHHG-GGT
T ss_pred             CCccc-cCCCCC-CcccChHHHHHHcc-ccC
Confidence            46799 999999 99999999999975 674

>d2adra1 g.37.1.1 (A:102-130) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.79  E-value=0.00016  Score=43.46  Aligned_cols=27  Identities=19%  Similarity=0.369  Sum_probs=23.2

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      || .|.+|| ..|.....|++|.+ +|.-|
T Consensus         2 p~-~C~~C~-k~F~~~~~L~~H~r-~HTgE   28 (29)
T d2adra1           2 SF-VCEVCT-RAFARQEHLKRHYR-SHTNE   28 (29)
T ss_dssp             CB-CCTTTC-CCBSCHHHHHHHHH-TTTSS
T ss_pred             cC-CCCCCC-CCCCCchHcccccC-cccCC
Confidence            89 999999 99999999999974 55443

>d1a1ia2 g.37.1.1 (A:132-159) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.72  E-value=0.00032  Score=42.02  Aligned_cols=23  Identities=17%  Similarity=0.369  Sum_probs=21.4

Q ss_pred             CCcccccccCCCcccCchHHHHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      -|| .|.+|| ..|.....|.+|.+
T Consensus         2 KPy-~C~~C~-k~F~~~~~L~~H~r   24 (28)
T d1a1ia2           2 KPF-QCRICM-RNFSRSDHLTTHIR   24 (28)
T ss_dssp             CCE-ECTTTC-CEESCHHHHHHHHH
T ss_pred             cCc-cCCCCc-CEecccccccccCC
Confidence            599 999999 99999999999965

>d1x6ea1 g.37.1.1 (A:8-40) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.67  E-value=0.00029  Score=43.54  Aligned_cols=30  Identities=23%  Similarity=0.418  Sum_probs=25.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      +-..|| .|.+|| ..|.....|.+| ..+|-.
T Consensus         3 Tgekpy-~C~~Cg-k~F~~~~~L~~H-~r~Htg   32 (33)
T d1x6ea1           3 SGEKPY-GCVECG-KAFSRSSILVQH-QRVHTG   32 (33)
T ss_dssp             TTCCCE-ECSSSC-CEESSHHHHHHH-HHGGGC
T ss_pred             CCCCCe-eCCCCC-CEeCchHHhHhh-ccccCC
Confidence            346799 999999 999999999999 446643

>d1p7aa_ g.37.1.1 (A:) Kruppel-like factor 3, Bklf {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Kruppel-like factor 3, Bklf
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.44  E-value=0.00085  Score=41.77  Aligned_cols=28  Identities=21%  Similarity=0.195  Sum_probs=24.4

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      +-+-|| .|..|| ..|.....|.+|.+ +|
T Consensus         7 TgeKPy-~C~~C~-k~F~~~~~L~~H~r-~H   34 (37)
T d1p7aa_           7 TGIKPF-QCPDCD-RSFSRSDHLALHRK-RH   34 (37)
T ss_dssp             CCSSSB-CCTTTC-CCBSSHHHHHHHHG-GG
T ss_pred             CCccCe-EeCCCC-CEecCHHHHHHHHh-cC
Confidence            456899 999999 99999999999964 55

>d1sp1a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.38  E-value=0.00052  Score=41.25  Aligned_cols=26  Identities=23%  Similarity=0.346  Sum_probs=22.7

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHKR   59 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHeR   59 (230)
                      || .|.+|| ..|.....|.+|-+. |.-
T Consensus         2 py-~C~~C~-k~F~~~s~L~~H~r~-Htg   27 (29)
T d1sp1a_           2 KF-ACPECP-KRFMRSDHLSKHIKT-HQN   27 (29)
T ss_dssp             CS-CCTTTT-CCCSCSHHHHHHHHG-GGC
T ss_pred             CE-ECCcCC-CeecchHHhhhhcCc-cCC
Confidence            89 999999 999999999999763 543

>d1x6ha2 g.37.1.1 (A:8-43) Transcriptional repressor CTCF {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcriptional repressor CTCF
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.18  E-value=0.0011  Score=41.05  Aligned_cols=29  Identities=24%  Similarity=0.312  Sum_probs=25.1

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      +.+-|| .|..|| ..|.....|++|.+.-|
T Consensus         4 TgekPy-~C~~C~-k~F~~~~~L~~H~r~H~   32 (36)
T d1x6ha2           4 TGEKPY-ACSHCD-KTFRQKQLLDMHFKRYH   32 (36)
T ss_dssp             CCCCCE-ECSSSS-CEESSHHHHHHHHHHTT
T ss_pred             CCCCCE-ECCCCC-CCcCCHhHHHHhCcccC
Confidence            456799 999999 99999999999986543

>d2adra2 g.37.1.1 (A:131-161) ADR1 {Synthetic, based on Saccharomyces cerevisiae sequence}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ADR1
species: Synthetic, based on Saccharomyces cerevisiae sequence

Probab=96.18  E-value=0.00056  Score=42.39  Aligned_cols=26  Identities=27%  Similarity=0.418  Sum_probs=23.9

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|++|| |+|.-.+-|.+|-..||.
T Consensus         1 Pf-~C~~C~-R~FaRrDLlLRH~qKlH~   26 (31)
T d2adra2           1 PY-PCGLCN-RAFTRRDLLIRHAQKIHS   26 (31)
T ss_dssp             SE-ECTTTC-CEESSHHHHHHHHTTTSC
T ss_pred             Cc-cccccc-chhhHHHHHHHHHHHHhc
Confidence            89 999999 999999999999888884

>d1zfda_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=95.98  E-value=0.0013  Score=40.41  Aligned_cols=26  Identities=23%  Similarity=0.328  Sum_probs=22.4

Q ss_pred             CCcccccc--cCCCcccCchHHHHHHHHHhH
Q 046085           30 EPYVLVIV--EGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        30 epy~~C~V--CGdrkf~t~~kL~kHFkqlHe   58 (230)
                      -|| .|.+  || .+|...+.|.+|. .+|.
T Consensus         2 rP~-~C~~pgC~-k~F~r~~~L~~H~-r~Ht   29 (32)
T d1zfda_           2 RPY-SCDHPGCD-KAFVRNHDLIRHK-KSHQ   29 (32)
T ss_dssp             CSB-CCCCTTCC-CCBSSSHHHHHHH-GGGT
T ss_pred             cCe-ECcCCCCC-CeeCCHHHHHHHh-hhcc
Confidence            599 9988  99 9999999999994 4554

>d1ubdc3 g.37.1.1 (C:351-380) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.95  E-value=0.0014  Score=39.51  Aligned_cols=25  Identities=28%  Similarity=0.452  Sum_probs=22.5

Q ss_pred             Ccccccc--cCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVIV--EGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~V--CGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|.+  || ++|.+...|..|.+ +|.
T Consensus         2 p~-~C~~~gCg-k~F~~~~~L~~H~r-~HT   28 (30)
T d1ubdc3           2 PF-QCTFEGCG-KRFSLDFNLRTHVR-IHT   28 (30)
T ss_dssp             CE-ECCSTTCC-CEESCHHHHHHHHH-HHH
T ss_pred             Cc-cCCCCCCC-ceECcHHHcCcccc-ccC
Confidence            89 9988  99 99999999999986 574

>d2cota2 g.37.1.1 (A:7-44) Zinc finger and SCAN domain-containing protein 16, ZSCAN16 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger and SCAN domain-containing protein 16, ZSCAN16
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.70  E-value=0.0024  Score=39.76  Aligned_cols=28  Identities=21%  Similarity=0.267  Sum_probs=24.3

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      +..-|| .|.+|| ..|.....|.+|-+ +|
T Consensus         8 t~ekpy-~C~~Cg-K~F~~~s~L~~H~r-~H   35 (38)
T d2cota2           8 RERRRY-KCDECG-KSFSHSSDLSKHRR-TH   35 (38)
T ss_dssp             CCSCSS-BCSSSC-CBCSCHHHHHHHHT-TT
T ss_pred             CCCCCE-ecCCCC-ceeeCHHHHHHhCc-cC
Confidence            457899 999999 99999999999954 55

>d1a1ia3 g.37.1.1 (A:160-187) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.60  E-value=0.002  Score=39.01  Aligned_cols=24  Identities=21%  Similarity=0.368  Sum_probs=21.1

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      +-|| .|-+|| |||-..+..++|-|
T Consensus         1 EkPf-~C~~Cg-rkFArsderkRH~k   24 (28)
T d1a1ia3           1 EKPF-ACDICG-RKFARSDERKRHTK   24 (28)
T ss_dssp             CCCE-ECTTTC-CEESSHHHHHHHHG
T ss_pred             CCCc-ccchhh-hhhhcchhhhhhhh
Confidence            3599 999999 99999999988865

>d2glia3 g.37.1.1 (A:168-197) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.59  E-value=0.0032  Score=38.06  Aligned_cols=24  Identities=17%  Similarity=0.184  Sum_probs=21.6

Q ss_pred             Ccccccc--cCCCcccCchHHHHHHHHHh
Q 046085           31 PYVLVIV--EGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        31 py~~C~V--CGdrkf~t~~kL~kHFkqlH   57 (230)
                      || .|.+  || ..|.....|.+|.+ +|
T Consensus         2 p~-~C~~~gCg-k~F~~~~~L~~H~r-~H   27 (30)
T d2glia3           2 PH-KCTFEGCR-KSYSRLENLKTHLR-SH   27 (30)
T ss_dssp             CC-CCCSTTCC-CCCSSHHHHHHHHH-HT
T ss_pred             Ce-eCCCCCCC-ceECChhHhhhhcC-cC
Confidence            89 9999  99 99999999999974 44

>d1a1ia1 g.37.1.1 (A:103-131) ZIF268 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZIF268
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.20  E-value=0.003  Score=37.98  Aligned_cols=24  Identities=33%  Similarity=0.558  Sum_probs=21.4

Q ss_pred             Ccccccc--cCCCcccCchHHHHHHHHHh
Q 046085           31 PYVLVIV--EGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        31 py~~C~V--CGdrkf~t~~kL~kHFkqlH   57 (230)
                      || .|.+  || .+|.+...|.+|.+ +|
T Consensus         2 p~-~C~~~gC~-k~F~~~~~L~~H~r-~H   27 (29)
T d1a1ia1           2 PY-ACPVESCD-RRFSRSADLTRHIR-IH   27 (29)
T ss_dssp             CE-ECCSTTCC-CEESSHHHHHHHTH-HH
T ss_pred             Ce-ECCCCCCC-cEECchhHhhhhcC-cc
Confidence            89 9988  99 99999999999975 44

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.18  E-value=0.0038  Score=40.06  Aligned_cols=24  Identities=29%  Similarity=0.371  Sum_probs=16.9

Q ss_pred             CCCCcccccccCCCcccCchHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHF   53 (230)
                      ...|| .|..|| ..|.+...|..|-
T Consensus        27 ~ekpy-~C~~C~-k~F~~~~~L~~H~   50 (53)
T d2csha1          27 GLRPY-GCGVCG-KKFKMKHHLVGHM   50 (53)
T ss_dssp             CCCSE-ECTTTS-CEESSSHHHHHHH
T ss_pred             cccCC-cCCCcC-CEecCHHHHHHHH
Confidence            45677 777777 7777777777773

>d1x6ea2 g.37.1.1 (A:41-66) Zinc finger protein 24 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 24
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.15  E-value=0.0038  Score=36.92  Aligned_cols=22  Identities=32%  Similarity=0.548  Sum_probs=20.4

Q ss_pred             CcccccccCCCcccCchHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      || .|..|| .-|..+..|.+|-+
T Consensus         2 Py-~C~eCg-K~F~~~s~L~~Hqr   23 (26)
T d1x6ea2           2 PY-KCLECG-KAFSQNSGLINHQR   23 (26)
T ss_dssp             CE-ECSSSC-CEESSHHHHHHHHH
T ss_pred             Cc-cCCCCc-CeeccCcccccCcc
Confidence            99 999999 99999999999854

>d1dbqa_ c.93.1.1 (A:) Purine repressor (PurR), C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Purine repressor (PurR), C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=95.03  E-value=0.048  Score=41.51  Aligned_cols=70  Identities=9%  Similarity=-0.036  Sum_probs=53.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      -|+..++++.|+.|...+...+.   .....+.+.+..++++.+++++.+.+-..+...+..+++..|++|..
T Consensus        20 ~gi~~~~~~~gy~~~~~~~~~d~---~~~~~~~~~l~~~~vdgiIi~~~~~~~~~~~~~~~~~~iPvV~~~~~   89 (282)
T d1dbqa_          20 EAVEKNCFQKGYTLILGNAWNNL---EKQRAYLSMMAQKRVDGLLVMCSEYPEPLLAMLEEYRHIPMVVMDWG   89 (282)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCH---HHHHHHHHHHHHTTCSEEEEECSCCCHHHHHHHHHTTTSCEEEEECS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHhcCCCEEeeecccccchhhhhHHhhcCCCceEEEec
Confidence            47788999999999876655444   45566667677899999999887776555566666789999999865

>d1klra_ g.37.1.1 (A:) ZFY {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: ZFY
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.92  E-value=0.0046  Score=37.74  Aligned_cols=29  Identities=24%  Similarity=0.355  Sum_probs=26.4

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .|| .|.+|. -|+-...+|+-|.|+.|-.|
T Consensus         1 kpy-~cqyc~-yrsadssnlkthiktkhske   29 (30)
T d1klra_           1 KTY-QCQYCE-FRSADSSNLKTHIKTKHSKE   29 (30)
T ss_dssp             CCC-CCSSSS-CCCSCSHHHHHHHHHHTSSC
T ss_pred             CCc-cccccc-cccccchhhhhhhhcccccC
Confidence            399 999999 99999999999999999765

>d1sp2a_ g.37.1.1 (A:) Transcription factor sp1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Transcription factor sp1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.91  E-value=0.0025  Score=38.59  Aligned_cols=25  Identities=28%  Similarity=0.546  Sum_probs=21.6

Q ss_pred             Cccccc--ccCCCcccCchHHHHHHHHHhH
Q 046085           31 PYVLVI--VEGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        31 py~~C~--VCGdrkf~t~~kL~kHFkqlHe   58 (230)
                      || .|+  -|| .+|.....|..|.+ +|.
T Consensus         2 pf-~C~~~~C~-k~F~~~~~L~~H~r-~Ht   28 (31)
T d1sp2a_           2 PF-MCTWSYCG-KRFTRSDELQRHKR-THT   28 (31)
T ss_dssp             CC-BCCSTTCC-CBCSSHHHHHHHHT-TTS
T ss_pred             cC-CCcCCCCC-cCcCChhHhhhhcC-ccc
Confidence            89 996  599 99999999999986 464

>d2glia5 g.37.1.1 (A:229-257) Five-finger GLI1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Five-finger GLI1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.81  E-value=0.0047  Score=37.69  Aligned_cols=27  Identities=30%  Similarity=0.610  Sum_probs=21.5

Q ss_pred             CCcccccccCCCcccC-chHHHHHHHHHh
Q 046085           30 EPYVLVIVEGDLRLYN-NDKLVNHFKQIH   57 (230)
Q Consensus        30 epy~~C~VCGdrkf~t-~~kL~kHFkqlH   57 (230)
                      -|| .|.+.|-.|-|| -.+|.||.|..|
T Consensus         1 KPY-~Ck~~gC~K~YtdPSSLRKH~k~~H   28 (29)
T d2glia5           1 KPY-VCKLPGCTKRYTDPSSLRKHVKTVH   28 (29)
T ss_dssp             CCE-ECCSTTTCCEESSHHHHHHHHHHSC
T ss_pred             CCe-ecccCCCCcccCCHHHHHHHHHhhC
Confidence            399 999966556665 467999999988

>d1ubdc4 g.37.1.1 (C:381-408) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.79  E-value=0.005  Score=36.82  Aligned_cols=22  Identities=18%  Similarity=0.350  Sum_probs=20.6

Q ss_pred             Ccccccc--cCCCcccCchHHHHHHH
Q 046085           31 PYVLVIV--EGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        31 py~~C~V--CGdrkf~t~~kL~kHFk   54 (230)
                      || .|..  || ..|.+...|++|.+
T Consensus         2 Pf-~C~~~gC~-K~F~~~~~L~~H~r   25 (28)
T d1ubdc4           2 PY-VCPFDGCN-KKFAQSTNLKSHIL   25 (28)
T ss_dssp             CC-CCCSTTCC-CCCSSTTTTHHHHH
T ss_pred             Cc-CCCCCCcC-CcCCCHHHHHHHHh
Confidence            89 9988  99 99999999999975

>d1bboa1 g.37.1.1 (A:1-28) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.63  E-value=0.0089  Score=36.10  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=20.1

Q ss_pred             cccccccCCCcccCchHHHHHHHH
Q 046085           32 YVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        32 y~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      | +|+.|| ++|.--.-|+||.+.
T Consensus         2 Y-vC~~Cg-~~C~KPSvL~KHIRs   23 (28)
T d1bboa1           2 Y-ICEECG-IRAKKPSMLKKHIRT   23 (28)
T ss_dssp             C-BCTTTC-CBCSSHHHHHHHHHH
T ss_pred             c-cccccC-cccCCHHHHHHHHHH
Confidence            7 999999 999999999999764

>d2csha1 g.37.1.1 (A:8-60) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.01  E-value=0.0058  Score=39.17  Aligned_cols=28  Identities=14%  Similarity=0.180  Sum_probs=24.2

Q ss_pred             CCcccccccCCCcccCchHHHHHHHHHhHHHH
Q 046085           30 EPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQ   61 (230)
Q Consensus        30 epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr   61 (230)
                      -|| .|. || ..|.+...|..|- .+|..|+
T Consensus         2 K~y-~C~-Cg-k~F~~~~~l~~H~-~~Ht~ek   29 (53)
T d2csha1           2 KLY-PCQ-CG-KSFTHKSQRDRHM-SMHLGLR   29 (53)
T ss_dssp             CCE-ECT-TS-CEESSHHHHHHHH-HHHSCCC
T ss_pred             cCC-CCC-CC-CeECCHHHhHHHh-hcccccc
Confidence            599 996 99 9999999999995 5887664

>d2dria_ c.93.1.1 (A:) D-ribose-binding protein {Escherichia coli, strain k-12 [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-ribose-binding protein
species: Escherichia coli, strain k-12 [TaxId: 562]

Probab=93.88  E-value=0.073  Score=40.06  Aligned_cols=70  Identities=7%  Similarity=-0.026  Sum_probs=53.8

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC-cchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD-SDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD-SDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+-.++++.|+.|.+....   .|.+...+..+.|-++|++.+++...+ ..+..+++.+++.|...|+++..
T Consensus        21 ~gi~~~a~~~g~~~~i~~~~---~~~~~~~~~i~~~~~~~~d~ii~~~~~~~~~~~~~~~~~~~~ipvV~~~~~   91 (271)
T d2dria_          21 DGAQKEADKLGYNLVVLDSQ---NNPAKELANVQDLTVRGTKILLINPTDSDAVGNAVKMANQANIPVITLDRQ   91 (271)
T ss_dssp             HHHHHHHHHHTCEEEEEECT---TCHHHHHHHHHHHTTTTEEEEEECCSSTTTTHHHHHHHHHTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEeCC---CCHHHHHHHHHHHHhcCCcccccccccccchHHHHHHHhhcceeEEEeccc
Confidence            58889999999999865432   244554455454557999999999765 55789999999999999999864

>d2epqa1 g.37.1.1 (A:380-411) PATZ1 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: PATZ1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.47  E-value=0.017  Score=35.59  Aligned_cols=24  Identities=33%  Similarity=0.628  Sum_probs=20.1

Q ss_pred             CCCcccccccCCCcccCchHHHHHHH
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      +.|| .|++|+ .||+..+-+.-|-+
T Consensus         1 ekp~-~cpic~-qrfkrkdrmsyhvr   24 (32)
T d2epqa1           1 EKPY-SCPVCG-LRFKRKDRMSYHVR   24 (32)
T ss_dssp             CCSS-EETTTT-EECSCHHHHHHHHH
T ss_pred             CCCc-ccchHH-HHhhccccceEeee
Confidence            3699 999999 99999888876654

>d1ncsa_ g.37.1.1 (A:) SWI5 zinc-finger domains {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: SWI5 zinc-finger domains
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=92.89  E-value=0.0098  Score=38.67  Aligned_cols=29  Identities=14%  Similarity=0.219  Sum_probs=24.4

Q ss_pred             CCCCCcccccc--cCCCcccCchHHHHHHHHHhH
Q 046085           27 RPAEPYVLVIV--EGDLRLYNNDKLVNHFKQIHK   58 (230)
Q Consensus        27 ~p~epy~~C~V--CGdrkf~t~~kL~kHFkqlHe   58 (230)
                      .+.-|| .|.+  || .+|.....|.+|- .+|.
T Consensus        14 ~gekpy-~C~~~~C~-k~F~~~~~L~~H~-r~Ht   44 (47)
T d1ncsa_          14 MPDKTF-ECLFPGCT-KTFKRRYNIRSHI-QTHL   44 (47)
T ss_dssp             ETTTEE-ECCCTTCC-CEECSSSSHHHHH-HHHT
T ss_pred             cCCCCe-ECCcCCCC-ccccCchHHHhhc-cccc
Confidence            567899 9988  99 9999999999994 4453

>d1jyea_ c.93.1.1 (A:) Lac-repressor (lacR) core (C-terminal domain) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Lac-repressor (lacR) core (C-terminal domain)
species: Escherichia coli [TaxId: 562]

Probab=92.77  E-value=0.098  Score=40.74  Aligned_cols=71  Identities=8%  Similarity=-0.006  Sum_probs=50.5

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++.+|+.|-.....-..+ ......+..++ .+++|.|+|-++..+...++..+.+.++.+|.+|-.
T Consensus        20 ~~i~~~a~~~Gy~v~v~~~~~~~~-~~~~~~l~~l~-~~~vdgiIl~~~~~~~~~~~~~~~~~~iPvV~~d~~   90 (271)
T d1jyea_          20 AAILSRADQLGASVVVSMVERSGV-EACKTAVHNLL-AQRVSGLIINYPLDDQDAIAVEAACTNVPALFLDVS   90 (271)
T ss_dssp             HHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHHH-TTTCSCEEEESCCCHHHHHHHHHHTTTSCEEESSSC
T ss_pred             HHHHHHHHHcCCEEEEEECCCCCH-HHHHHHHHHHH-hcCCCEEEeccccCchhHHHHHHHhcCCCeeeeecc
Confidence            578889999999986432211110 12333444445 689999998877777788889999999999999764

>d1zr9a1 g.37.1.4 (A:28-94) Zinc finger protein 593, ZNF593 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: HkH motif-containing C2H2 finger
domain: Zinc finger protein 593, ZNF593
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.52  E-value=0.02  Score=40.06  Aligned_cols=31  Identities=16%  Similarity=0.313  Sum_probs=25.6

Q ss_pred             cccccCCCcccCchHHHHHHHHHhHHHHHHHh
Q 046085           34 LVIVEGDLRLYNNDKLVNHFKQIHKREQKKRL   65 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHFkqlHeREr~Krl   65 (230)
                      -|.+|+ +.|.|...|.+||++---+.|-|+|
T Consensus        17 YCv~C~-K~F~se~~l~~H~ksKkHKrrvk~L   47 (67)
T d1zr9a1          17 RCLACA-RYFIDSTNLKTHFRSKDHKKRLKQL   47 (67)
T ss_dssp             EETTTT-EECSSHHHHHHHTTCHHHHHHHHHH
T ss_pred             eccccc-CccCCHHHHHHHHcccHHHHHHHHh
Confidence            699999 9999999999999987544455544

>d8abpa_ c.93.1.1 (A:) L-arabinose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: L-arabinose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=92.41  E-value=0.26  Score=38.10  Aligned_cols=67  Identities=13%  Similarity=-0.056  Sum_probs=49.1

Q ss_pred             chhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcc-hHHHHHHHHHcCCeEEEecC
Q 046085          105 SLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSD-FVEVLQEATLRCLKTGVAGY  175 (230)
Q Consensus       105 gLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSD-F~~lLr~ARer~l~TVVVGd  175 (230)
                      |.-.+.+..|+.+..++ -.   |.+-...+++.|-..++|.|++++-+++ +..+++.|+++|+.+|.++.
T Consensus        22 g~~~aa~~~G~~~i~~~-~~---d~~~q~~~i~~li~~~vDgiIi~~~~~~~~~~~~~~a~~~giPVV~~d~   89 (305)
T d8abpa_          22 FADKAGKDLGFEVIKIA-VP---DGEKTLNAIDSLAASGAKGFVICTPDPKLGSAIVAKARGYDMKVIAVDD   89 (305)
T ss_dssp             HHHHHHHHHTEEEEEEE-CC---SHHHHHHHHHHHHHTTCCEEEEECSCGGGHHHHHHHHHHTTCEEEEESS
T ss_pred             HHHHHHHHcCCEEEEEc-CC---CHHHHHHHHHHHHHcCCCEEEEccccccccHHHHHHHHhcCCCEEEEcC
Confidence            44556677899885443 22   3344455555555799999999987665 67899999999999999964

>d1njqa_ g.37.1.3 (A:) SUPERMAN zinc finger domain {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Plant C2H2 finger (QALGGH zinc finger)
domain: SUPERMAN zinc finger domain
species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=91.82  E-value=0.018  Score=36.62  Aligned_cols=33  Identities=18%  Similarity=0.388  Sum_probs=28.8

Q ss_pred             CCCCcccccccCCCcccCchHHHHHHHHHhHHHHHH
Q 046085           28 PAEPYVLVIVEGDLRLYNNDKLVNHFKQIHKREQKK   63 (230)
Q Consensus        28 p~epy~~C~VCGdrkf~t~~kL~kHFkqlHeREr~K   63 (230)
                      |+..| .|.+|+ +.|.+---|==| ...|-++|.+
T Consensus         2 p~r~~-~C~~C~-k~F~s~qALGGH-~~~Hr~~r~~   34 (37)
T d1njqa_           2 PPRSY-TCSFCK-REFRSAQALGGH-MNVHRRDRAR   34 (37)
T ss_dssp             CSSSE-ECTTTC-CEESSHHHHHHH-HHTTCCSCTT
T ss_pred             CCCcc-CCCCCC-CccCCcccccch-HhhhcchHHH
Confidence            77889 999999 999999999999 5888777654

>d1tjya_ c.93.1.1 (A:) AI-2 receptor LsrB {Salmonella typhi [TaxId: 90370]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: AI-2 receptor LsrB
species: Salmonella typhi [TaxId: 90370]

Probab=90.80  E-value=0.29  Score=37.10  Aligned_cols=71  Identities=11%  Similarity=-0.011  Sum_probs=52.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.|..+..  .-.|.+-.....+.|-..++|.|+++..++ .+...++.|.+.|..+|++...
T Consensus        23 ~g~~~~a~~~G~~v~~~~~--~~~d~~~q~~~i~~~i~~~~dgIIi~~~~~~~~~~~~~~a~~~gi~vv~~d~~   94 (316)
T d1tjya_          23 NGAQEAGKALGIDVTYDGP--TEPSVSGQVQLVNNFVNQGYDAIIVSAVSPDGLCPALKRAMQRGVKILTWDSD   94 (316)
T ss_dssp             HHHHHHHHHHTCEEEECCC--SSCCHHHHHHHHHHHHHTTCSEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEEC--CCCCHHHHHHHHHHHHhcCCCeeeecccccchhhhhhhhhhcccccceecccc
Confidence            5788889999998875421  112344444444444468999999987665 5788999999999999998765

>d1bboa2 g.37.1.1 (A:29-57) Enhancer binding protein {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Enhancer binding protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.43  E-value=0.055  Score=32.66  Aligned_cols=23  Identities=22%  Similarity=0.420  Sum_probs=21.6

Q ss_pred             CcccccccCCCcccCchHHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQ   55 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkq   55 (230)
                      || .|..|. --|+|.-+|.+|.|.
T Consensus         1 py-~C~~Cn-F~FKTKGNLTKHmkS   23 (29)
T d1bboa2           1 PY-HCTYCN-FSFKTKGNLTKHMKS   23 (29)
T ss_dssp             CE-ECSSSS-CEESSHHHHHHHHHS
T ss_pred             Cc-ccceee-eeEeeccchhHhhhh
Confidence            89 999999 999999999999874

>d1guda_ c.93.1.1 (A:) D-allose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: D-allose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=89.52  E-value=0.34  Score=36.95  Aligned_cols=72  Identities=8%  Similarity=0.033  Sum_probs=52.4

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC-cchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD-SDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD-SDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      -|+-.+++..|+.|..+....+ .|.+...+..+.|-++++|.|++.+-+ .+....++.|.+.|...|.+...
T Consensus        21 ~g~~~~a~~~g~~~~i~~~~~~-~d~~~q~~~i~~~i~~~~DgIi~~~~~~~~~~~~l~~~~~~gipvv~~d~~   93 (288)
T d1guda_          21 KGIEDEAKTLGVSVDIFASPSE-GDFQSQLQLFEDLSNKNYKGIAFAPLSSVNLVMPVARAWKKGIYLVNLDEK   93 (288)
T ss_dssp             HHHHHHHHHHTCCEEEEECSST-TCHHHHHHHHHHHHTSSEEEEEECCSSSSTTHHHHHHHHHTTCEEEEESSC
T ss_pred             HHHHHHHHHcCCEEEEEecCCC-CCHHHHHHHHHHHHhcCCCEEEEecCCcchhhHHHHHHHhCCCeEEEeCCC
Confidence            4778888999999986532222 344544444444447999999998654 56788999999999999988764

>d1ubdc2 g.37.1.1 (C:323-350) Ying-yang 1 (yy1, zinc finger domain) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Ying-yang 1 (yy1, zinc finger domain)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=88.99  E-value=0.058  Score=32.27  Aligned_cols=19  Identities=21%  Similarity=0.219  Sum_probs=18.1

Q ss_pred             cccccCCCcccCchHHHHHH
Q 046085           34 LVIVEGDLRLYNNDKLVNHF   53 (230)
Q Consensus        34 ~C~VCGdrkf~t~~kL~kHF   53 (230)
                      +|..|| .-|-...+|++||
T Consensus         4 vc~ecg-kaf~essklkrh~   22 (28)
T d1ubdc2           4 VCAECG-KAFVESSKLKRHQ   22 (28)
T ss_dssp             ECTTTC-CEESSHHHHHHHG
T ss_pred             hHHHHh-HHHHHHHHHHHHh
Confidence            799999 9999999999998

>d2fvya1 c.93.1.1 (A:2-306) Galactose/glucose-binding protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Galactose/glucose-binding protein
species: Escherichia coli [TaxId: 562]

Probab=88.06  E-value=0.82  Score=34.50  Aligned_cols=70  Identities=11%  Similarity=0.001  Sum_probs=50.0

Q ss_pred             Cchhhhhhhh-cEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEc-CCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRV-WFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVS-DDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRA-Gv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVS-DDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++.. |+-+......   .|.+...+..+.|-++++|.|++.. +...+...+.++++.|..+|++...
T Consensus        21 ~gi~~~a~~~~~~~l~~~~~~---~~~~~q~~~i~~li~~~vDgiii~~~~~~~~~~~~~~~~~~~ipvv~~~~~   92 (305)
T d2fvya1          21 KAIEQDAKAAPDVQLLMNDSQ---NDQSKQNDQIDVLLAKGVKALAINLVDPAAAGTVIEKARGQNVPVVFFNKE   92 (305)
T ss_dssp             HHHHHHHHTCTTEEEEEEECT---TCHHHHHHHHHHHHHTTCSEEEECCSSGGGHHHHHHHHHTTTCCEEEESSC
T ss_pred             HHHHHHHHHcCCcEEEEEcCC---CCHHHHHHHHHHHHHcCCCEEEeecccccccHHHHHHHHhcCCceeeeeec
Confidence            3666677765 7777644322   2445555554444468999999885 5578899999999999999999765

>d2feaa1 c.108.1.20 (A:2-227) 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: MtnX-like
domain: 2-hydroxy-3-keto-5-methylthiopentenyl-1-phosphate phosphatase MtnX
species: Bacillus subtilis [TaxId: 1423]

Probab=87.75  E-value=0.47  Score=34.99  Aligned_cols=96  Identities=14%  Similarity=0.076  Sum_probs=60.8

Q ss_pred             hHHHHHHHhhhcCCccC-CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHH-hhcCcceEEEEcCCcch--------
Q 046085           87 METYKMASKATLTPKVG-YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMM-DKRRFGCLVFVSDDSDF--------  156 (230)
Q Consensus        87 ~~KY~~AAr~vl~pkvg-ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m-~~r~vdclvLVSDDSDF--------  156 (230)
                      .+.|.......+++.-| ..+-..|+..|+.+-.+|.++..    ..+.+.+-+ ..--+-|--++.++.++        
T Consensus        63 ~~~~~~~~~~~~~l~pg~~~~l~~L~~~g~~~~ivS~~~~~----~i~~~l~~l~~~~~~~an~~~~~~~~~~~~~~~~~  138 (226)
T d2feaa1          63 KEEITSFVLEDAKIREGFREFVAFINEHEIPFYVISGGMDF----FVYPLLEGIVEKDRIYCNHASFDNDYIHIDWPHSC  138 (226)
T ss_dssp             HHHHHHHHHHHCCBCTTHHHHHHHHHHHTCCEEEEEEEEHH----HHHHHHTTTSCGGGEEEEEEECSSSBCEEECTTCC
T ss_pred             HHHHHHHHHhccchhHHHHHHHHHHHhcccccccCCcchhh----hHHHHHHHcCCccceeeeeEEEeCCcceecccccc
Confidence            34455555555555545 55777899999999999998875    223332111 01123343455444433        


Q ss_pred             ------------HHHHHHHHHcCCeEEEecCC-CCchhhhhhh
Q 046085          157 ------------VEVLQEATLRCLKTGVAGYM-NDGTLKRIAD  186 (230)
Q Consensus       157 ------------~~lLr~ARer~l~TVVVGd~-~~~aL~r~AD  186 (230)
                                  ..+++......-.++.|||+ +|-...+.||
T Consensus       139 ~~~~~~~k~~~~~~~~~~~~~~~~~~i~iGDs~~Dl~~a~~A~  181 (226)
T d2feaa1         139 KGTCSNQCGCCKPSVIHELSEPNQYIIMIGDSVTDVEAAKLSD  181 (226)
T ss_dssp             CTTCCSCCSSCHHHHHHHHCCTTCEEEEEECCGGGHHHHHTCS
T ss_pred             ccccccCCHHHHHHHHHHhcCCCceEEEEeCchhhHHHHHHCC
Confidence                        46677777777799999999 7777778889

>d2csha2 g.37.1.1 (A:61-104) Zinc finger protein 297b {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 297b
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.37  E-value=0.094  Score=34.20  Aligned_cols=27  Identities=19%  Similarity=0.273  Sum_probs=22.7

Q ss_pred             CCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           29 AEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        29 ~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ..|| -|.+|| .||--++++.+|--.--
T Consensus         3 iKPY-eC~~C~-KrFMWRDSF~RH~~~C~   29 (44)
T d2csha2           3 IKPY-ECNICA-KRFMWRDSFHRHVTSCT   29 (44)
T ss_dssp             CCCE-ECSSSC-CEESCHHHHHHHHHHHH
T ss_pred             CCce-eccchh-hhhhhHHHHHHhhhhhh
Confidence            3699 999999 99999999999865443

>d2dmda2 g.37.1.1 (A:8-33) Zinc finger protein 64, ZFP68 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 64, ZFP68
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.07  E-value=0.11  Score=30.46  Aligned_cols=22  Identities=32%  Similarity=0.387  Sum_probs=18.9

Q ss_pred             CcccccccCCCcccCchHHHHHHH
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFK   54 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFk   54 (230)
                      |. .|.||| .-|...++|+-|.+
T Consensus         1 ph-kc~~c~-kcfsrkdklk~hmr   22 (26)
T d2dmda2           1 PH-KCEVCG-KCFSRKDKLKTHMR   22 (26)
T ss_dssp             CC-CBTTTT-BCCCCHHHHHHHGG
T ss_pred             CC-ccchhh-hHhcchhHHHHHhh
Confidence            66 899999 88899999988854

>d2bona1 e.52.1.2 (A:5-299) Lipid kinase YegS {Escherichia coli [TaxId: 562]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Lipid kinase YegS
species: Escherichia coli [TaxId: 562]

Probab=86.46  E-value=0.34  Score=38.72  Aligned_cols=53  Identities=21%  Similarity=0.216  Sum_probs=38.6

Q ss_pred             HHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          133 NYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       133 ~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      +++...+...|+++-+.+|... +-..+++.|.+.+..+|||+.+ ||++..+++
T Consensus        18 ~~~~~~l~~~g~~~~v~~T~~~g~a~~~~~~~~~~~~d~Ivv~GG-DGTv~ev~~   71 (295)
T d2bona1          18 REAIMLLREEGMTIHVRVTWEKGDAARYVEEARKFGVATVIAGGG-DGTINEVST   71 (295)
T ss_dssp             HHHHHHHHTTTCCEEEEECCSTTHHHHHHHHHHHHTCSEEEEEES-HHHHHHHHH
T ss_pred             HHHHHHHHHCCCEEEEEEcCCcchHHHHHHHHHhcCCCEEEEECC-CcHHHHHHH
Confidence            4666777777788877776554 7777778887788887777776 677777766

>d1yuja_ g.37.1.1 (A:) GAGA factor {Drosophila melanogaster [TaxId: 7227]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GAGA factor
species: Drosophila melanogaster [TaxId: 7227]

Probab=85.49  E-value=0.25  Score=33.13  Aligned_cols=29  Identities=14%  Similarity=0.170  Sum_probs=26.0

Q ss_pred             CCCCCcccccccCCCcccCchHHHHHHHHHh
Q 046085           27 RPAEPYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        27 ~p~epy~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      ...+|- .|+.|| .-.+...+|.+|...+|
T Consensus        20 ~s~qpa-tcpic~-avirqsrnlrrhlel~h   48 (54)
T d1yuja_          20 QSEQPA-TCPICY-AVIRQSRNLRRHLELRH   48 (54)
T ss_dssp             TTSCCE-ECTTTC-CEESSHHHHHHHHHHHT
T ss_pred             cccCCC-CCchHH-HHHHHHHHHHHHHHHHh
Confidence            346888 999999 99999999999999988

>d2dlka2 g.37.1.1 (A:38-73) Zinc finger protein 692, ZNF692 {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: Zinc finger protein 692, ZNF692
species: Human (Homo sapiens) [TaxId: 9606]

Probab=84.94  E-value=0.15  Score=31.31  Aligned_cols=25  Identities=20%  Similarity=0.223  Sum_probs=20.6

Q ss_pred             cccc--cCCCcccCchHHHHHHHHHhHHH
Q 046085           34 LVIV--EGDLRLYNNDKLVNHFKQIHKRE   60 (230)
Q Consensus        34 ~C~V--CGdrkf~t~~kL~kHFkqlHeRE   60 (230)
                      .|.+  || ..|.....|++|.+ +|.-|
T Consensus         3 ~C~~~~C~-k~F~~~~~L~~H~r-~Htge   29 (36)
T d2dlka2           3 SCPEPACG-KSFNFKKHLKEHMK-LHSDT   29 (36)
T ss_dssp             ECSCTTTC-CEESSHHHHHHHHH-HHHTS
T ss_pred             ECCCCCCC-CeeCChhHhccccC-eeCCC
Confidence            6776  99 99999999999965 47644

>d1jx6a_ c.93.1.1 (A:) Quorum-sensing signal (autoinducer-2) binding protein LuxP {Vibrio harveyi [TaxId: 669]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Quorum-sensing signal (autoinducer-2) binding protein LuxP
species: Vibrio harveyi [TaxId: 669]

Probab=83.29  E-value=1.5  Score=34.65  Aligned_cols=71  Identities=13%  Similarity=0.099  Sum_probs=46.9

Q ss_pred             CchhhhhhhhcE--EEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHH-HHcCCeEEEecC
Q 046085          104 YSLVVKLKRVWF--WVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEA-TLRCLKTGVAGY  175 (230)
Q Consensus       104 ygLa~eLrRAGv--~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~A-Rer~l~TVVVGd  175 (230)
                      .|+..++...|+  .+.++...++ .|.+......+.|-+.++|.||+.+++++....+..+ .+.+..+|+++-
T Consensus        61 ~~~~~~~~~~g~~~~i~~~~~~s~-~d~~~q~~~i~~~i~~~vDgIIi~~~~~~~~~~i~~~~~~~~ipvv~~~~  134 (338)
T d1jx6a_          61 ASFEKRLYKLNINYQLNQVFTRPN-ADIKQQSLSLMEALKSKSDYLIFTLDTTRHRKFVEHVLDSTNTKLILQNI  134 (338)
T ss_dssp             HHHHHHHHHTTCCEEEEEEECCTT-CCHHHHHHHHHHHHHTTCSEEEECCSSSTTHHHHHHHHHHCSCEEEEETC
T ss_pred             HHHHHHHHHcCCcEEEEEEecCCC-CCHHHHHHHHHHHHhcCCCEEEEecCcccchHHHHHHHHhCCCeEEEEcc
Confidence            467788888884  4444433333 3445555544444479999999999888888766554 456677777654

>d1m3sa_ c.80.1.3 (A:) Hypothetical protein YckF {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein YckF
species: Bacillus subtilis [TaxId: 1423]

Probab=82.83  E-value=0.79  Score=34.75  Aligned_cols=68  Identities=10%  Similarity=0.106  Sum_probs=49.4

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+.|+.+-.++|-- +          ..+  ..=|+++.+|-.   .+-..+++.|+++|+++|.|-+.....|.
T Consensus        55 ~~~~l~~lg~~~~~~~d~~-~----------~~~--~~~Dl~I~iS~sG~t~~~i~~~~~ak~~g~~iI~IT~~~~s~La  121 (186)
T d1m3sa_          55 FAMRLMHMGFNAHIVGEIL-T----------PPL--AEGDLVIIGSGSGETKSLIHTAAKAKSLHGIVAALTINPESSIG  121 (186)
T ss_dssp             HHHHHHHTTCCEEETTSTT-C----------CCC--CTTCEEEEECSSSCCHHHHHHHHHHHHTTCEEEEEESCTTSHHH
T ss_pred             HHHHHHhccCCCCcCChhh-c----------ccC--CCCCEEEEecCccchhhhHHHHHHHHHCCCCEEEEecCCCchhh
Confidence            3445788999888776521 1          012  233788888755   35567889999999999999776567999


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       122 ~~ad  125 (186)
T d1m3sa_         122 KQAD  125 (186)
T ss_dssp             HHCS
T ss_pred             HhCC
Confidence            9999

>d2nzug1 c.93.1.1 (G:58-332) Glucose-resistance amylase regulator CcpA, C-terminal domain {Bacillus megaterium [TaxId: 1404]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Glucose-resistance amylase regulator CcpA, C-terminal domain
species: Bacillus megaterium [TaxId: 1404]

Probab=82.60  E-value=3  Score=31.13  Aligned_cols=69  Identities=9%  Similarity=0.023  Sum_probs=48.3

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYM  176 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~  176 (230)
                      .|+..+++..|+.+....-.-..   +....+.+.+..++++.+++++...+ ......+++.+...|.++..
T Consensus        23 ~gi~~~~~~~g~~~~~~~~~~~~---~~e~~~i~~~~~~~vdgii~~~~~~~-~~~~~~l~~~~~pvv~~~~~   91 (275)
T d2nzug1          23 RGIEDIATMYKYNIILSNSDQNQ---DKELHLLNNMLGKQVDGIIFMSGNVT-EEHVEELKKSPVPVVLAASI   91 (275)
T ss_dssp             HHHHHHHHHTTCEEEEEECTTCH---HHHHHHHHHHHTTCCSEEEECCSCCC-HHHHHHHHHCSSCEEEESCC
T ss_pred             HHHHHHHHHcCCEEEEEECCCCH---HHHHHHHHHHHhcCCceeeccccchh-hHHHHHHhhccccccccccc
Confidence            57889999999998755433222   33344444444689999998875544 34456788899999999865

>d2dlqa1 g.37.1.1 (A:93-118) GLI-Krueppel family member HKR3 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: beta-beta-alpha zinc fingers
superfamily: beta-beta-alpha zinc fingers
family: Classic zinc finger, C2H2
domain: GLI-Krueppel family member HKR3
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=82.08  E-value=0.29  Score=28.50  Aligned_cols=25  Identities=20%  Similarity=0.418  Sum_probs=23.2

Q ss_pred             CcccccccCCCcccCchHHHHHHHHHh
Q 046085           31 PYVLVIVEGDLRLYNNDKLVNHFKQIH   57 (230)
Q Consensus        31 py~~C~VCGdrkf~t~~kL~kHFkqlH   57 (230)
                      || .|..|. ..|-...+|+.|.-.||
T Consensus         2 py-kcsscs-qqfmqkkdlqshmiklh   26 (26)
T d2dlqa1           2 PY-KCSSCS-QQFMQKKDLQSHMIKLH   26 (26)
T ss_dssp             SE-ECSSSC-CEESSHHHHHHHHHHTS
T ss_pred             CC-cccHHH-HHHHHHHHHHHHHHhcC
Confidence            89 999999 99999999999987776

>d2qv7a1 e.52.1.2 (A:1-312) Diacylglycerol kinase DgkB {Staphylococcus aureus [TaxId: 1280]}

class: Multi-domain proteins (alpha and beta)
fold: NAD kinase/diacylglycerol kinase-like
superfamily: NAD kinase/diacylglycerol kinase-like
family: Diacylglycerol kinase-like
domain: Diacylglycerol kinase DgkB
species: Staphylococcus aureus [TaxId: 1280]

Probab=81.17  E-value=1  Score=36.00  Aligned_cols=73  Identities=18%  Similarity=0.117  Sum_probs=41.6

Q ss_pred             hhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCc-chHHHHHHHHHcCCeEEEecCCCCchhhhhhh
Q 046085          111 KRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDS-DFVEVLQEATLRCLKTGVAGYMNDGTLKRIAD  186 (230)
Q Consensus       111 rRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDS-DF~~lLr~ARer~l~TVVVGd~~~~aL~r~AD  186 (230)
                      ||+-|.+++.|.+-++.  .....+...+.+.+++.-+..|+.. +...+++.+...+..++||..+ ||++..+++
T Consensus         3 kr~~vi~NP~SG~~~~~--~~~~~~~~~l~~~~~~~~~~~t~~~~~~~~~~~~~~~~~~d~ivv~GG-DGTv~~v~~   76 (312)
T d2qv7a1           3 KRARIIYNPTSGKEQFK--RELPDALIKLEKAGYETSAYATEKIGDATLEAERAMHENYDVLIAAGG-DGTLNEVVN   76 (312)
T ss_dssp             EEEEEEECTTSTTSCHH--HHHHHHHHHHHHTTEEEEEEECCSTTHHHHHHHHHTTTTCSEEEEEEC-HHHHHHHHH
T ss_pred             ceEEEEECcCCCCCcHH--HHHHHHHHHHHHCCCeEEEEEcCCccHHHHHHHHHHHcCCCEEEEEcC-CcHHHHHHH
Confidence            45556666666554432  1223445555555666666666543 5556666666666666666555 566666666

>d1vima_ c.80.1.3 (A:) Hypothetical protein AF1796 {Archaeon Archaeoglobus fulgidus [TaxId: 2234]}

class: Alpha and beta proteins (a/b)
fold: SIS domain
superfamily: SIS domain
family: mono-SIS domain
domain: Hypothetical protein AF1796
species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]

Probab=80.97  E-value=0.93  Score=34.50  Aligned_cols=68  Identities=18%  Similarity=0.202  Sum_probs=48.9

Q ss_pred             hhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCC---cchHHHHHHHHHcCCeEEEecCCCCchhh
Q 046085          106 LVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDD---SDFVEVLQEATLRCLKTGVAGYMNDGTLK  182 (230)
Q Consensus       106 La~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDD---SDF~~lLr~ARer~l~TVVVGd~~~~aL~  182 (230)
                      ++..|.+-|..|..+++--..           .+ + .=|+++++|-.   .+-..+++.|+++|.++|.|=+.....|.
T Consensus        58 ~~~~l~~lg~~~~~~~~~~~~-----------~i-~-~~Dl~i~iS~sG~t~~~i~~~~~ak~~g~~vI~IT~~~~s~l~  124 (192)
T d1vima_          58 FAMRLMHLGYTVYVVGETVTP-----------RI-T-DQDVLVGISGSGETTSVVNISKKAKDIGSKLVAVTGKRDSSLA  124 (192)
T ss_dssp             HHHHHHHTTCCEEETTSTTCC-----------CC-C-TTCEEEEECSSSCCHHHHHHHHHHHHHTCEEEEEESCTTSHHH
T ss_pred             hhhhhcccccccccccccccc-----------cc-c-ccccceeccccccchhhHHHHHHHHhhcccceeeeeccccccc
Confidence            345677889988877663211           12 1 23778888743   55677888999999999999666567899


Q ss_pred             hhhh
Q 046085          183 RIAD  186 (230)
Q Consensus       183 r~AD  186 (230)
                      +.||
T Consensus       125 ~~ad  128 (192)
T d1vima_         125 KMAD  128 (192)
T ss_dssp             HHCS
T ss_pred             cccc
Confidence            9999

>d1r8ja2 c.23.1.5 (A:1-135) N-terminal domain of the circadian clock protein KaiA {Synechococcus elongatus [TaxId: 32046]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: CheY-like
family: N-terminal domain of the circadian clock protein KaiA
domain: N-terminal domain of the circadian clock protein KaiA
species: Synechococcus elongatus [TaxId: 32046]

Probab=80.90  E-value=1  Score=34.67  Aligned_cols=36  Identities=22%  Similarity=0.451  Sum_probs=31.8

Q ss_pred             cCcceEEEEcCCcchHHHHHHHHHcC--CeEEEecCCC
Q 046085          142 RRFGCLVFVSDDSDFVEVLQEATLRC--LKTGVAGYMN  177 (230)
Q Consensus       142 r~vdclvLVSDDSDF~~lLr~ARer~--l~TVVVGd~~  177 (230)
                      ..|||||||.++.+...+.....++|  +-+||||+.+
T Consensus        49 e~iDcLVl~~~~~~l~~l~~qL~~~GlLlPaViv~~~~   86 (135)
T d1r8ja2          49 DQIDCLILVAANPSFRAVVQQLCFEGVVVPAIVVGDRD   86 (135)
T ss_dssp             TSCSEEEEETTSTTHHHHHHHHHHTTCCCCEEEESCCC
T ss_pred             ccCCEEEEEecCCccHHHHHHHHhcCccccEEEEecCC
Confidence            45999999999999999999999988  5799999763

>d1byka_ c.93.1.1 (A:) Trehalose repressor, C-terminal domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like I
superfamily: Periplasmic binding protein-like I
family: L-arabinose binding protein-like
domain: Trehalose repressor, C-terminal domain
species: Escherichia coli [TaxId: 562]

Probab=80.50  E-value=1.2  Score=33.85  Aligned_cols=69  Identities=7%  Similarity=-0.038  Sum_probs=49.1

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCCeEEEecCCCC
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCLKTGVAGYMND  178 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l~TVVVGd~~~  178 (230)
                      .|+..+|+..|+.+-++....+.   .......+.|-.+++|.|++.+.+.+-..   .+...+...|+||...+
T Consensus        22 ~~i~~~~~~~Gy~~~~~~s~~d~---~~~~~~i~~l~~~~vdgiIi~~~~~~~~~---~~~~~~~p~v~i~~~~~   90 (255)
T d1byka_          22 QTMLPAFYEQGYDPIMMESQFSP---QLVAEHLGVLKRRNIDGVVLFGFTGITEE---MLAHWQSSLVLLARDAK   90 (255)
T ss_dssp             HHHHHHHHHHTCEEEEEECTTCH---HHHHHHHHHHHTTTCCEEEEECCTTCCTT---TSGGGSSSEEEESSCCS
T ss_pred             HHHHHHHHHcCCEEEEEeCCCCH---HHHHHHHHHHHhccccceeeccccchHHH---HHHHcCCCEEEeccCCC
Confidence            57899999999999876554433   33344455566789999999877665543   44567888999986643

>d1u7pa_ c.108.1.17 (A:) Magnesium-dependent phosphatase-1, Mdp1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Alpha and beta proteins (a/b)
fold: HAD-like
superfamily: HAD-like
family: Magnesium-dependent phosphatase-1, Mdp1
domain: Magnesium-dependent phosphatase-1, Mdp1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=80.49  E-value=3.2  Score=29.86  Aligned_cols=90  Identities=7%  Similarity=-0.070  Sum_probs=53.7

Q ss_pred             CchhhhhhhhcEEEEEccccchHHHHHHHHHHHHHHhhcCcceEEEEcCCcchHHHHHHHHHcCC---eEEEecCC-CCc
Q 046085          104 YSLVVKLKRVWFWVRTMSDKLQAADVLLRNYMVDMMDKRRFGCLVFVSDDSDFVEVLQEATLRCL---KTGVAGYM-NDG  179 (230)
Q Consensus       104 ygLa~eLrRAGv~VrtV~dKpqAAD~AL~~~m~~~m~~r~vdclvLVSDDSDF~~lLr~ARer~l---~TVVVGd~-~~~  179 (230)
                      ..+-..|+..|+.+-.+|.++..   ...+.+.+.+.-....-.+..+..++-..+...++.-|+   .+++|||. .+-
T Consensus        52 ~e~L~~L~~~G~~~~v~S~~~~~---~~~~~~l~~~~~~~~~~~~~~~~kp~~~~~~~~~~~~~~~~~~~l~igD~~~di  128 (164)
T d1u7pa_          52 PEVLGRLQSLGVPVAAASRTSEI---QGANQLLELFDLGKYFIQREIYPGSKVTHFERLHHKTGVPFSQMVFFDDENRNI  128 (164)
T ss_dssp             HHHHHHHHHTTCCEEEEECCSCH---HHHHHHHHHTTCGGGCSEEEESSSCHHHHHHHHHHHHCCCGGGEEEEESCHHHH
T ss_pred             HHHHHHHHHCCCcEEEEeccccc---hhhccchhcccccccceeeecccCCChHHHHHHHHHhCCChHHEEEEcCCHHHH
Confidence            35668899999999988887764   222333333321222233345666666666667777777   68999997 211


Q ss_pred             hhhhhhh----ccccccchHH
Q 046085          180 TLKRIAD----RLKWAYNSEV  196 (230)
Q Consensus       180 aL~r~AD----~leW~~~~e~  196 (230)
                      .-.+.|-    .++|-++.++
T Consensus       129 ~aA~~aG~~~i~v~~G~~~~~  149 (164)
T d1u7pa_         129 IDVGRLGVTCIHIRDGMSLQT  149 (164)
T ss_dssp             HHHHTTTCEEEECSSCCCHHH
T ss_pred             HHHHHcCCEEEEECCCCChHH
Confidence            2222222    6788876655