Citrus Sinensis ID: 046132

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-
Protein Sequence
MGNISSSSGNGRRRHGSRRSHPPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE
Secondary Structure (PSIPRED)
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEcEEEEcccEEEEEccccccEEEEEEEEEccccEEEEEEEEEcccccccccEEEEEccccccEEEcccccccccccHHHHHHccccccccEEEEEEEEEccccccccccccccccccccEEEEEEEEccccEEEEEEEEEEEEccEEEEEHHHHcccccccccccccccccccEEEEcccccEEEEccccccccHHHHHHHHHcccccccccHHHHHEEEEEcccccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccccccccccccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEEccEEEccccEEEEEcccccccEEEEEEEEccccEEEEEEEEEEccccccccEEEEccccccEEEEccccccccHccccHHHHccccccccEEEEEEEEEEccccccccccccccccccEEEEEEEEcccccEEEEEEEEEEEEccEEEEEEEEEEEcccccccccccccccEEEEEEcccccEEEEccccHEccHHHHHHHHHHHccccccccHHHHHHHEEEccccc
Coil and Loop (DISEMBL)
mgnissssgngrrrhgsrrshpppppptppqqeitanryvfaavtpyptqypnsnnpnnnnnnnnpppqyyqyppggyypppppampvplpapfdhhhrgggggepgqwrypcgpmmappppyvehqkavtirndvnlkkeslkleadeenpgkllVSFTFdatvagrrrrlqpgtnkenlfaPVTVQFQRglgqkfrqpsgtgidfsmFEETELlkegnmdvyplavkadaspvnqngsdgnsipgpansqiTQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYgignsvdgdvdandpgkecviclseprdttvlpcrhmcmcsgcakvlrfqtnrcpicrqPVERLLEIKVNGPEE
Flexible Loop (DISEMBL)
mgnissssgngrrrhgsrrshpppppptppqqEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKleadeenpgkllvsftfdatvAGRRrrlqpgtnkenlfapVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNgsdgnsipgpaNSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRfqtnrcpicrqpverlleikvngpee
Low Complexity Region (SEG)
MGNIssssgngrrrhgsrrshpppppptppQQEITANRYVFAAVTpyptqypnsnnpnnnnnnnnpppqyyqyppggyypppppAMPVPLPAPFDHHHRgggggEPGQWRYpcgpmmappppYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE
Disordered region (IsUnstruct)
************************************NRYVFAAVTPY**********************************************************************************************************KLLVSFTFDATVAGRR*********ENLFAPVTVQFQRGLGQKFR***GTGIDFSMFEETELLKEGNMDVYPLA****************************AVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK******
Disordered Region (DISOPRED)
***************************************VFAAVTPY************************************************HHHRGGGGGEPGQWRYPCGP********VEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASP**************ANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGI***********DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN****
Disordered Region (DISEMBL)
******************************QQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE
Disordered Region (DISPRO)
*********************PPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVN******NSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNS*********PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNG***
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGNISSSSGNGRRRHGSRRSHPPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	361	2.2.26 [Sep-21-2011]
Q9S752	388	Probable E3 ubiquitin-pro	yes	no	0.681	0.634	0.678	2e-95
Q9LYW5	337	Probable E3 ubiquitin-pro	no	no	0.889	0.952	0.524	4e-88
Q9LFH6	299	Probable E3 ubiquitin-pro	no	no	0.670	0.809	0.617	2e-82
Q8LA32	359	Probable E3 ubiquitin-pro	no	no	0.692	0.696	0.441	7e-60
Q84ME1	378	Probable E3 ubiquitin-pro	no	no	0.869	0.830	0.416	8e-60
O60291	552	E3 ubiquitin-protein liga	yes	no	0.656	0.429	0.336	1e-33
Q5XIQ4	533	E3 ubiquitin-protein liga	no	no	0.653	0.442	0.334	2e-33
Q3TEL6	685	RING finger protein 157 O	yes	no	0.631	0.332	0.365	3e-33
Q96PX1	679	RING finger protein 157 O	no	no	0.631	0.335	0.372	3e-33
Q9D074	532	E3 ubiquitin-protein liga	no	no	0.653	0.443	0.334	4e-33

>sp|Q9S752|LOFG2_ARATH Probable E3 ubiquitin-protein ligase LOG2 OS=Arabidopsis thaliana GN=LOG2 PE=1 SV=1

 Score =  349 bits (896), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/264 (67%), Positives = 211/264 (79%), Gaps = 18/264 (6%)

Query: 110 RYP-CGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGR 168
           RYP  G MMA P PYVEHQKAVTIRNDVNLKKESL+LE D +NPG+ LVSFTFDATV+GR
Sbjct: 109 RYPYAGHMMAQPTPYVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVSGR 168

Query: 169 RRRL---------QPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEG 219
              +         +    KE++  P+T+ F++GLGQKF+Q SG+GIDFS+FE+ EL K  
Sbjct: 169 ISVIFFAKESEDCKLTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFKAA 228

Query: 220 -NMDVYPLAVKADASPVN-QNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVN 277
            + ++YPLAVKA+A+P   +N  +  S  G  N+QITQAV+EK+KGE ++RVVKQILWVN
Sbjct: 229 ADTEIYPLAVKAEAAPSGGENEEEERS--GSKNAQITQAVYEKDKGEIKIRVVKQILWVN 286

Query: 278 GMRYELQEIYGIGNSVDGDVDAND----PGKECVICLSEPRDTTVLPCRHMCMCSGCAKV 333
           G RYELQEIYGIGN+V+GD D+ D    PGKECVICLSEPRDTTVLPCRHMCMCSGCAKV
Sbjct: 287 GTRYELQEIYGIGNTVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKV 346

Query: 334 LRFQTNRCPICRQPVERLLEIKVN 357
           LRFQTNRCPICRQPVERLLEIKV+
Sbjct: 347 LRFQTNRCPICRQPVERLLEIKVH 370

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro). Required for GLUTAMINE DUMPER 1(GDU1)-induced amino acid secretion and for amino acid homeostasis. Ubiquitinates GDU1 (in vitro).
Arabidopsis thaliana (taxid: 3702)
EC: 6EC: .EC: 3EC: .EC: 2EC: .EC: -

>sp|Q9LYW5|LUL1_ARATH Probable E3 ubiquitin-protein ligase LUL1 OS=Arabidopsis thaliana GN=LUL1 PE=1 SV=1

 Score =  325 bits (832), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 196/374 (52%), Positives = 231/374 (61%), Gaps = 53/374 (14%)

Query: 1   MGNISSSSGNGRRRHGSRRSHPPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNN 60
           MGN+ S      RR   +RS+ PP   T P  E+  NR+VFAAV PY             
Sbjct: 1   MGNLISLIFCCGRR---QRSNIPPAMETAPL-ELPPNRFVFAAVPPY------------- 43

Query: 61  NNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPM---- 116
               NP P Y    PG   PPP    P+ LP  F+H H       P  ++ P  P+    
Sbjct: 44  ---LNPNPNYVDQYPGNCLPPPVTEPPM-LPYNFNHLHHY----PPNSYQLP-HPLFHGG 94

Query: 117 ---MAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQ 173
              + PPP YV HQKAVTIRNDVNLKK++L L  D ENP +LLVSFTFDA++ GR   + 
Sbjct: 95  RYPILPPPTYV-HQKAVTIRNDVNLKKKTLTLIPDPENPNRLLVSFTFDASMPGRITVVF 153

Query: 174 PGT---------NKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVY 224
             T          KE+   P+T  F  GLGQKF Q SGTGID + F+++EL KE + DV+
Sbjct: 154 FATEDAECNLRATKEDTLPPITFDFGEGLGQKFIQSSGTGIDLTAFKDSELFKEVDTDVF 213

Query: 225 PLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQ 284
           PLAVKA+A+P  +  S      G  N QITQ V+ KEKGE ++ VVKQILWVN  RYEL 
Sbjct: 214 PLAVKAEATPAEEGKS------GSTNVQITQVVYTKEKGEIKIEVVKQILWVNKRRYELL 267

Query: 285 EIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 344
           EIYGI N+VDG    +D GKECV+CLSEPRDTTVLPCRHMCMCSGCAK LRFQTN CP+C
Sbjct: 268 EIYGIENTVDG----SDEGKECVVCLSEPRDTTVLPCRHMCMCSGCAKALRFQTNLCPVC 323

Query: 345 RQPVERLLEIKVNG 358
           RQPVE LLEI  NG
Sbjct: 324 RQPVEMLLEINKNG 337

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q9LFH6|LUL2_ARATH Probable E3 ubiquitin-protein ligase LUL2 OS=Arabidopsis thaliana GN=LUL2 PE=2 SV=1

 Score =  306 bits (783), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 160/259 (61%), Positives = 185/259 (71%), Gaps = 17/259 (6%)

Query: 110 RYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATV---- 165
           RYP G M A P  YVEHQ+AVTIRND+NLKKE+L+LE DE+NPGK L+SFTFDA+V    
Sbjct: 42  RYPYGEM-ASPVQYVEHQEAVTIRNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSI 100

Query: 166 -----AGRRRRLQPGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGN 220
                A   +       KE+LF    V F +GL Q+F+Q  GTGIDFS   E +L++   
Sbjct: 101 TVMFFAKEGKDCNLIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANE 160

Query: 221 MDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKE-KGEYQVRVVKQILWVNGM 279
            DVY +AVKA+         D +   G  N QIT  V EK+ KGEY+ RVVKQILWVNG 
Sbjct: 161 TDVYHVAVKAEVV-----SEDDHPESGTPNRQITHVVLEKDHKGEYKARVVKQILWVNGN 215

Query: 280 RYELQEIYGIGNSVDGD-VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT 338
           RY LQEIYGIGN+VD +  DAN+ GKECVICLSEPRDTTVLPCRHMCMCSGCAK+LRFQT
Sbjct: 216 RYVLQEIYGIGNTVDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQT 275

Query: 339 NRCPICRQPVERLLEIKVN 357
           N CPICRQPV+RLLEI VN
Sbjct: 276 NLCPICRQPVDRLLEITVN 294

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q8LA32|LUL4_ARATH Probable E3 ubiquitin-protein ligase LUL4 OS=Arabidopsis thaliana GN=LUL4 PE=2 SV=1

 Score =  231 bits (589), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 124/281 (44%), Positives = 167/281 (59%), Gaps = 31/281 (11%)

Query: 104 GEPGQWRYPCGPMMAPP------------PPYVEHQKAVTIRNDVNLKKESLKLEADEEN 151
            +P  W    GPMM P              PY+E Q A  +RNDVN+ +++++LE D+  
Sbjct: 85  AQPNWW----GPMMRPAYYCPPQPQTQPPKPYLEQQNAKKVRNDVNVHRDTVRLEVDDLV 140

Query: 152 PGKLLVSFTFDATVAGRRRRLQPGTNKEN---------LFAPVTVQFQRGLGQKFRQPSG 202
           PG  LVSF FDA   G          + N         +++P    FQ+G GQKF QPSG
Sbjct: 141 PGHHLVSFVFDALFDGSFTITFFAKEEPNCTIIPQFPEVYSPTRFHFQKGPGQKFLQPSG 200

Query: 203 TGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKE- 261
           TG D S F   +L K    DVYPL + A+      + S+ +S+    + Q+TQAV EK+ 
Sbjct: 201 TGTDLSFFVLDDLSKPLEEDVYPLVISAETIISPNSISEQSSV----HKQVTQAVLEKDN 256

Query: 262 KGEYQVRVVKQILWVNGMRYELQEIYG-IGNSVDGDVDANDPGKECVICLSEPRDTTVLP 320
            G ++V+VVKQILW+ G+RYEL+E+YG         +D +  G ECVIC++E +DT VLP
Sbjct: 257 DGSFKVKVVKQILWIEGVRYELRELYGSTTQGAASGLDESGSGTECVICMTEAKDTAVLP 316

Query: 321 CRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE 361
           CRH+CMCS CAK LR Q+N+CPICRQP+E LLEIK+N  +E
Sbjct: 317 CRHLCMCSDCAKELRLQSNKCPICRQPIEELLEIKMNSSDE 357

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q84ME1|LUL3_ARATH Probable E3 ubiquitin-protein ligase LUL3 OS=Arabidopsis thaliana GN=LUL3 PE=1 SV=1

 Score =  231 bits (588), Expect = 8e-60,   Method: Compositional matrix adjust.
 Identities = 147/353 (41%), Positives = 192/353 (54%), Gaps = 39/353 (11%)

Query: 35  TANRYVFAAVTPYPT-QYPNSNNPNNNNNNNNPPPQYYQYPPGG-------YYPPPPPAM 86
             N Y ++   P  T Q      P    +++ PPP    Y P G       YYP   P  
Sbjct: 37  PQNGYSYSHNYPVSTPQLSLPPPPAQPPSSSQPPPSQISYRPYGQNYHQNQYYPQQAP-- 94

Query: 87  PVPLPAPFDHHHRGGGGGEPGQWRYPCGP----MMAPPPPYVEHQKAVTIRNDVNLKKES 142
               P    +HH G     P       GP    +M PP PYVEHQ A  ++NDVN+ K +
Sbjct: 95  ----PYFTGYHHNGFN---PMMRPVYFGPTPVAVMEPPAPYVEHQTAKKVKNDVNVNKAT 147

Query: 143 LKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENL---------FAPVTVQFQRGL 193
           ++L AD+ NPG  LVSF FDA   G    +  G  +            F P+ V FQ+G 
Sbjct: 148 VRLVADDLNPGHYLVSFVFDALFDGSFTIIFFGEEESKCTIVPHLPEAFPPIKVPFQKGA 207

Query: 194 GQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQI 253
           GQKF Q  GTGID   F   +L K    +VYPL + A+      + S+   +    + QI
Sbjct: 208 GQKFLQAPGTGIDLGFFSLDDLSKPSPEEVYPLVISAETVISPSSVSEEPLV----HKQI 263

Query: 254 TQAVFEKE-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDA----NDPGKECVI 308
           TQAV EK   G ++V+V+KQILW+ G RYELQE+YGI NS+     A    +  GKECVI
Sbjct: 264 TQAVLEKTNDGSFKVKVMKQILWIEGERYELQELYGIDNSITQGTAASGLEDTGGKECVI 323

Query: 309 CLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE 361
           CL+EP+DT V+PCRH+C+CS CA+ LRFQTN+CPICRQP+  L++IKV   +E
Sbjct: 324 CLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPIHELVKIKVESSDE 376

Acts as an E3 ubiquitin-protein ligase, or as part of E3 complex, which accepts ubiquitin from specific E2 ubiquitin-conjugating enzymes and then transfers it to substrates (in vitro).

Arabidopsis thaliana (taxid: 3702)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|O60291|MGRN1_HUMAN E3 ubiquitin-protein ligase MGRN1 OS=Homo sapiens GN=MGRN1 PE=1 SV=2

 Score =  144 bits (363), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 95/282 (33%), Positives = 149/282 (52%), Gaps = 45/282 (15%)

Query: 103 GGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKL---EADEENPG------ 153
           G  P Q+     P + P P    H+   T+R+ VN++K+SL+L   + D ++P       
Sbjct: 64  GSRPVQF-----PYVTPAP----HEPVKTLRSLVNIRKDSLRLVRYKDDADSPTEDGDKP 114

Query: 154 KLLVS--FTFDA----TVAGRRRRLQPGTNKENLFAPV-------TVQFQRGLGQKFRQP 200
           ++L S  FTFDA     +    +  +   N   +++P        TV ++RG+ Q+F  P
Sbjct: 115 RVLYSLEFTFDADARVAITIYCQASEEFLNGRAVYSPKSPSLQSETVHYKRGVSQQFSLP 174

Query: 201 SGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEK 260
           S   IDFS +++ EL  + +  V+P+ ++A     +     G       ++ +  A FEK
Sbjct: 175 S-FKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTG-------HAHVLLAAFEK 226

Query: 261 E-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVD-----GDVDANDPGKECVICLSEPR 314
              G + V+ +KQ   V+ + Y LQEIYGI N  +      D + +D   ECV+CLS+ R
Sbjct: 227 HMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSNECVVCLSDLR 286

Query: 315 DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356
           DT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+ 
Sbjct: 287 DTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIRA 328

E3 ubiquitin-protein ligase. Mediates monoubiquitination at multiple sites of TSG101 in the presence of UBE2D1, but not of UBE2G1, nor UBE2H. Plays a role in the regulation of endosome-to-lysosome trafficking. Impairs MC1R- and MC4R-signaling by competing with GNAS-binding to MCRs and inhibiting agonist-induced cAMP production. Does not inhibit ADRB2-signaling. Does not promote MC1R ubiquitination.

Homo sapiens (taxid: 9606)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q5XIQ4|MGRN1_RAT E3 ubiquitin-protein ligase MGRN1 OS=Rattus norvegicus GN=Mgrn1 PE=2 SV=1

 Score =  143 bits (360), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 145/281 (51%), Gaps = 45/281 (16%)

Query: 103 GGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKL----------EADEENP 152
           G  P Q+     P + P P    H+   T+R+ VN++K+SL+L            D E P
Sbjct: 65  GSRPVQF-----PYVTPAP----HEPVKTLRSLVNIRKDSLRLVRYKDDTDSPTEDGEKP 115

Query: 153 GKLL-VSFTFDA----TVAGRRRRLQPGTNKENLFA-------PVTVQFQRGLGQKFRQP 200
             L  + FTFDA     +    + ++   N   +++         TV ++RG+ Q+F  P
Sbjct: 116 RVLYSLEFTFDADARVAITIYCQAVEEFVNGMTVYSCKNPSLQSETVHYKRGVSQQFSLP 175

Query: 201 SGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEK 260
           S   IDFS +++ EL  + +  V+P+ ++A     +     G       ++ +  A FEK
Sbjct: 176 S-FKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTG-------HAHVLLAAFEK 227

Query: 261 E-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVD-----GDVDANDPGKECVICLSEPR 314
              G + V+ +KQ   V+ + Y LQEIYGI N  +      D + +D   ECV+CLS+ R
Sbjct: 228 HVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLR 287

Query: 315 DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 355
           DT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct: 288 DTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 328

E3 ubiquitin-protein ligase. Mediates TSG101 monoubiquitination at multiple sites. Plays a role in the regulation of endosome-to-lysosome trafficking. Impairs MC1R- and MC4R-signaling by competing with GNAS-binding to MCRs and inhibiting agonist-induced cAMP production. Does not inhibit ADRB2-signaling. Does not promote MC1R ubiquitination.

Rattus norvegicus (taxid: 10116)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

>sp|Q3TEL6|RN157_MOUSE RING finger protein 157 OS=Mus musculus GN=Rnf157 PE=2 SV=2

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 99/271 (36%), Positives = 141/271 (52%), Gaps = 43/271 (15%)

Query: 115 PMMAPPPPYVEHQKAVTIRNDVNLKKESLKL-------EADEENPGKLLV----SFTFD- 162
           P  APPP     +   T+R+ +N++K++L+L       ++  E  GK  V     FTFD 
Sbjct: 71  PYAAPPP----QEPVKTLRSLINIRKDTLRLVKCAEEVKSHGEEAGKAKVHYNVEFTFDT 126

Query: 163 -ATVA-----GRRRRLQPGTN----KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEE 212
            A VA           Q G      K+N     TV ++RG+ Q+F  PS T +D S + E
Sbjct: 127 DARVAITIYYQATEEFQNGIASYIPKDNSLQSETVHYKRGVFQQFCLPSHT-VDPSEWAE 185

Query: 213 TELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKE-KGEYQVRVVK 271
            EL  + + +VYPL V A          +G+   G  +  +    FEK   G + V+ +K
Sbjct: 186 EELGFDLDREVYPLVVHAVVD-------EGDEYFG--HCHVLLGTFEKHPDGTFCVKPLK 236

Query: 272 QILWVNGMRYELQEIYGIGNSVD------GDVDANDPGKECVICLSEPRDTTVLPCRHMC 325
           Q   V+G+ Y LQEIYGI N  +       + D +D   ECV+CLS+ RDT +LPCRH+C
Sbjct: 237 QKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLC 296

Query: 326 MCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356
           +C+ CA  LR+Q N CPICR P   LL+I+ 
Sbjct: 297 LCNTCADTLRYQANNCPICRLPFRALLQIRA 327

Mus musculus (taxid: 10090)

>sp|Q96PX1|RN157_HUMAN RING finger protein 157 OS=Homo sapiens GN=RNF157 PE=1 SV=3

 Score =  142 bits (359), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/271 (37%), Positives = 145/271 (53%), Gaps = 43/271 (15%)

Query: 115 PMMAPPPPYVEHQKAVTIRNDVNLKKESLKLE--ADE-ENPGKLL--------VSFTF-- 161
           P  APPP     +   T+R+ VN++K++L+L   A+E ++PG+          V FTF  
Sbjct: 71  PYAAPPP----QEPVKTLRSLVNIRKDTLRLVKCAEEVKSPGEEASKAKVHYNVEFTFDT 126

Query: 162 DATVA-----GRRRRLQPGTN----KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEE 212
           DA VA           Q G      K+N     TVQ++RG+ Q+F  PS T +D S + E
Sbjct: 127 DARVAITIYYQATEEFQNGIASYIPKDNSLQSETVQYKRGVCQQFCLPSHT-VDPSEWAE 185

Query: 213 TELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKE-KGEYQVRVVK 271
            EL  + + +VYPL V A          +G+   G  +  +    FEK   G + V+ +K
Sbjct: 186 EELGFDLDREVYPLVVHAVV-------DEGDEYFG--HCHVLLGTFEKHTDGTFCVKPLK 236

Query: 272 QILWVNGMRYELQEIYGIGNSVD------GDVDANDPGKECVICLSEPRDTTVLPCRHMC 325
           Q   V+G+ Y LQEIYGI N  +       + + +D   ECV+CLS+ RDT +LPCRH+C
Sbjct: 237 QKQVVDGVSYLLQEIYGIENKYNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLC 296

Query: 326 MCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356
           +C+ CA  LR+Q N CPICR P   LL+I+ 
Sbjct: 297 LCNTCADTLRYQANNCPICRLPFRALLQIRA 327

Homo sapiens (taxid: 9606)

>sp|Q9D074|MGRN1_MOUSE E3 ubiquitin-protein ligase MGRN1 OS=Mus musculus GN=Mgrn1 PE=1 SV=2

 Score =  142 bits (358), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 94/281 (33%), Positives = 145/281 (51%), Gaps = 45/281 (16%)

Query: 103 GGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKL----------EADEENP 152
           G  P Q+     P + P P    H+   T+R+ VN++K+SL+L            D E P
Sbjct: 64  GSRPVQF-----PYVTPAP----HEPVKTLRSLVNIRKDSLRLVRYKEDADSPTEDGEKP 114

Query: 153 GKLL-VSFTFDA----TVAGRRRRLQPGTNKENLFA-------PVTVQFQRGLGQKFRQP 200
             L  + FTFDA     +    + ++   N   +++         TV ++RG+ Q+F  P
Sbjct: 115 RVLYSLEFTFDADARVAITIYCQAVEELVNGVAVYSCKNPSLQSETVHYKRGVSQQFSLP 174

Query: 201 SGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEK 260
           S   IDFS +++ EL  + +  V+P+ ++A     +     G       ++ +  A FEK
Sbjct: 175 S-FKIDFSEWKDDELNFDLDRGVFPVVIQAVVDEGDVVEVTG-------HAHVLLAAFEK 226

Query: 261 E-KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVD-----GDVDANDPGKECVICLSEPR 314
              G + V+ +KQ   V+ + Y LQEIYGI N  +      D + +D   ECV+CLS+ R
Sbjct: 227 HVDGSFSVKPLKQKQIVDRVSYLLQEIYGIENKNNQETKPSDDENSDNSSECVVCLSDLR 286

Query: 315 DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 355
           DT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct: 287 DTLILPCRHLCLCTSCADTLRYQANNCPICRLPFRALLQIR 327

E3 ubiquitin-protein ligase. Mediates TSG101 monoubiquitination at multiple sites. Plays a role in the regulation of endosome-to-lysosome trafficking. Impairs MC1R- and MC4R-signaling by competing with GNAS-binding to MCRs and inhibiting agonist-induced cAMP production. Does not inhibit ADRB2-signaling. Does not promote MC1R ubiquitination.

Mus musculus (taxid: 10090)

EC: 6

EC: .

EC: 3

EC: .

EC: 2

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
449440089	368	PREDICTED: probable E3 ubiquitin-protein	0.977	0.959	0.701	1e-126
225439970	362	PREDICTED: E3 ubiquitin-protein ligase M	0.955	0.953	0.743	1e-126
147770085	292	hypothetical protein VITISV_005072 [Viti	0.761	0.941	0.750	1e-119
224069424	284	predicted protein [Populus trichocarpa]	0.759	0.964	0.744	1e-117
356537549	349	PREDICTED: E3 ubiquitin-protein ligase M	0.828	0.856	0.660	1e-113
255557020	306	mahogunin, putative [Ricinus communis] g	0.833	0.983	0.677	1e-112
356548246	349	PREDICTED: E3 ubiquitin-protein ligase M	0.828	0.856	0.648	1e-111
108707230	430	zinc finger family protein, putative, ex	0.853	0.716	0.618	1e-110
224140185	283	predicted protein [Populus trichocarpa]	0.759	0.968	0.712	1e-109
297746246	383	unnamed protein product [Vitis vinifera]	0.869	0.819	0.629	1e-106

>gi|449440089|ref|XP_004137817.1| PREDICTED: probable E3 ubiquitin-protein ligase LOG2-like [Cucumis sativus] gi|449513666|ref|XP_004164388.1| PREDICTED: probable E3 ubiquitin-protein ligase LOG2-like [Cucumis sativus]

 Score =  459 bits (1180), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 263/375 (70%), Positives = 289/375 (77%), Gaps = 22/375 (5%)

Query: 1   MGNISSSSGNGRRRHGSRRSHPPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNN 60
           MGNI SS  N RRRHG+RR+HP PPPP PPQ EIT+NRYVFAA TPYPTQYPN  N    
Sbjct: 1   MGNIGSSGSNARRRHGTRRNHPTPPPPPPPQPEITSNRYVFAAATPYPTQYPNHPNHPPP 60

Query: 61  NNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGG-GGEPGQW---RYPCGPM 116
                                PPP+MP+PLPAP+DHHHRGG    +P  W   RYP GP 
Sbjct: 61  YYQYPGYFPPPP--------GPPPSMPMPLPAPYDHHHRGGHPQMDPAHWVGGRYPYGPP 112

Query: 117 MAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRL---Q 173
           M P  PYVEHQKAVTIRNDVNLKKE+LK+E DEENPG+ LVSFTFDATVAG        +
Sbjct: 113 MPPQTPYVEHQKAVTIRNDVNLKKETLKVEPDEENPGQFLVSFTFDATVAGSITIFFFAK 172

Query: 174 PGTN------KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLA 227
            G +      KE++F P+TV F++GLGQKFRQPSGTGIDFS FEE+E LK  + DVYPL 
Sbjct: 173 EGEDCNLTPVKEDIFQPITVHFEQGLGQKFRQPSGTGIDFSKFEESEFLKVNDTDVYPLV 232

Query: 228 VKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIY 287
           VKA+AS   Q G DG  +P P NSQITQAVFEK+KGEYQVRV+KQILWVNGMRYELQEIY
Sbjct: 233 VKAEASTDTQTGPDGTPVPDPMNSQITQAVFEKDKGEYQVRVLKQILWVNGMRYELQEIY 292

Query: 288 GIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
           GIGNSV+GDVD NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP
Sbjct: 293 GIGNSVEGDVDGNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 352

Query: 348 VERLLEIKV-NGPEE 361
           V+RLLEI+V NGPEE
Sbjct: 353 VDRLLEIRVSNGPEE 367

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225439970|ref|XP_002280999.1| PREDICTED: E3 ubiquitin-protein ligase MGRN1-like [Vitis vinifera]

 Score =  458 bits (1178), Expect = e-126,   Method: Compositional matrix adjust.
 Identities = 281/378 (74%), Positives = 306/378 (80%), Gaps = 33/378 (8%)

Query: 1   MGNISSSSGNGRRRHGSRRSHPPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNN 60
           MGNI SSS NGRRRHGSRRSHPPPPPP PPQ EIT N+YVFAA  PYPTQYPN N     
Sbjct: 1   MGNIGSSSVNGRRRHGSRRSHPPPPPPQPPQPEITPNQYVFAA--PYPTQYPNPN----- 53

Query: 61  NNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGG-------GGGEPGQWRYPC 113
                 PPQYYQYP  G+YPPPP AMPVPLPAP+DHHHRGG               RY C
Sbjct: 54  ------PPQYYQYP--GFYPPPPAAMPVPLPAPYDHHHRGGPPPHMDPAHANFVAGRYSC 105

Query: 114 GPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRL- 172
           GP++ P  PYVEHQKAVTIRNDVNLKKE+L+LE DEE+PG+ LV+FTFDATV G    + 
Sbjct: 106 GPVVPPHAPYVEHQKAVTIRNDVNLKKETLRLEPDEEHPGRFLVAFTFDATVPGSITIIF 165

Query: 173 --QPGTN------KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVY 224
             + G +      KENL  PVTV FQ+GLGQKFRQP+GTGIDFS FEE+ELLKEG+MDVY
Sbjct: 166 FAKEGEDCSLSPMKENL-EPVTVHFQQGLGQKFRQPTGTGIDFSTFEESELLKEGDMDVY 224

Query: 225 PLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQ 284
           PL VKA+ASP+NQ G+DGN IPG  NSQIT+AVFEKEKGEYQVRVVKQILWVNGMRYELQ
Sbjct: 225 PLEVKAEASPINQIGADGNPIPGTMNSQITKAVFEKEKGEYQVRVVKQILWVNGMRYELQ 284

Query: 285 EIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPIC 344
           EIYGIGNSVDGD D+NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT+RCPIC
Sbjct: 285 EIYGIGNSVDGDFDSNDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTDRCPIC 344

Query: 345 RQPVERLLEIKV-NGPEE 361
           RQ VERLLEIKV NG ++
Sbjct: 345 RQLVERLLEIKVSNGSDD 362

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147770085|emb|CAN69886.1| hypothetical protein VITISV_005072 [Vitis vinifera]

 Score =  434 bits (1115), Expect = e-119,   Method: Compositional matrix adjust.
 Identities = 220/293 (75%), Positives = 243/293 (82%), Gaps = 18/293 (6%)

Query: 86  MPVPLPAPFDHHHRGG-------GGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNL 138
           MPVPLPAP+DHHHRGG               RY CGP++ P  PYVEHQKAVTIRNDVNL
Sbjct: 1   MPVPLPAPYDHHHRGGPPPHMDPAHANFVAGRYSCGPVVPPHAPYVEHQKAVTIRNDVNL 60

Query: 139 KKESLKLEADEENPGKLLVSFTFDATVAGRRRRL---QPGTN------KENLFAPVTVQF 189
           KKE+L+LE DEE+PG+ LV+FTFDATV G    +   + G +      KENL  PVTV F
Sbjct: 61  KKETLRLEPDEEHPGRFLVAFTFDATVPGSITIIFFAKEGEDCSLSPMKENL-EPVTVHF 119

Query: 190 QRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPA 249
           Q+GLGQKFRQP+GTGIDFS FEE+ELLKEG+MDVYPL VKA+ASP+NQ G+DGN IPG  
Sbjct: 120 QQGLGQKFRQPTGTGIDFSTFEESELLKEGDMDVYPLEVKAEASPINQIGADGNPIPGTM 179

Query: 250 NSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVIC 309
           NSQIT+AVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGD D+NDPGKECVIC
Sbjct: 180 NSQITKAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDFDSNDPGKECVIC 239

Query: 310 LSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV-NGPEE 361
           LSEPRDTTVLPCRHMCMCSGCAKVLRFQT+RCPICRQ VERLLEIKV NG ++
Sbjct: 240 LSEPRDTTVLPCRHMCMCSGCAKVLRFQTDRCPICRQLVERLLEIKVSNGSDD 292

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224069424|ref|XP_002326350.1| predicted protein [Populus trichocarpa] gi|222833543|gb|EEE72020.1| predicted protein [Populus trichocarpa]

 Score =  428 bits (1100), Expect = e-117,   Method: Compositional matrix adjust.
 Identities = 213/286 (74%), Positives = 233/286 (81%), Gaps = 12/286 (4%)

Query: 86  MPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKL 145
           MPVPLPAP+DHHHR         W     PMM  P PYVEHQKAVTIRNDVNLKKESL++
Sbjct: 1   MPVPLPAPYDHHHRVDHPA--AHWVSGRCPMMPQPAPYVEHQKAVTIRNDVNLKKESLRI 58

Query: 146 EADEENPGKLLVSFTFDATVAGRRRRLQPGTNKEN---------LFAPVTVQFQRGLGQK 196
           E DEENPG  LV+FTFDATVAG    +      E+         L  PVTV FQ+GLGQK
Sbjct: 59  EPDEENPGSYLVTFTFDATVAGSITIIFFAKEGEDCILTPTKAYLLPPVTVNFQQGLGQK 118

Query: 197 FRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQA 256
           FRQPSGTGIDF++FEE EL+KEG MD YPLAVKA+ASP N+ G++GN + G  NSQIT A
Sbjct: 119 FRQPSGTGIDFTLFEEKELVKEGEMDAYPLAVKAEASPANRKGTEGNQMSGATNSQITHA 178

Query: 257 VFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDT 316
           VFEKEKGEYQVRV+KQILWVNG+RYELQEIYGIG+SVDGDVDANDPGKECVICLSEPRDT
Sbjct: 179 VFEKEKGEYQVRVMKQILWVNGIRYELQEIYGIGDSVDGDVDANDPGKECVICLSEPRDT 238

Query: 317 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV-NGPEE 361
           TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV+RLLEIKV NGP+E
Sbjct: 239 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVDRLLEIKVNNGPDE 284

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356537549|ref|XP_003537289.1| PREDICTED: E3 ubiquitin-protein ligase MGRN1-like [Glycine max]

 Score =  413 bits (1061), Expect = e-113,   Method: Compositional matrix adjust.
 Identities = 224/339 (66%), Positives = 251/339 (74%), Gaps = 40/339 (11%)

Query: 33  EITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPA 92
           E+TANR+V          YP +  P            Y+ YP  GYYPPP   MP PLPA
Sbjct: 37  EVTANRFV----------YPPAATP------------YHNYP--GYYPPPT-TMPAPLPA 71

Query: 93  PFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENP 152
           P+DHHHR     +P   RYP       P PYVEHQKAVTI+NDVN+KKE+L++E D+ENP
Sbjct: 72  PYDHHHRPAV--DPMWVRYP-PAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENP 128

Query: 153 GKLLVSFTFDATVAGRRRRLQPGTN---------KENLFAPVTVQFQRGLGQKFRQPSGT 203
           G  LVSFTFDATV+G    L              KEN+  PVTV FQ+GLGQKF+QP+GT
Sbjct: 129 GCFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGT 188

Query: 204 GIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIP--GPANSQITQAVFEKE 261
           GIDFS FEE+ELLK G+MDVYP+A+KADAS  + + S  N  P  G +NSQITQAVFEKE
Sbjct: 189 GIDFSTFEESELLKAGDMDVYPVAIKADASSGDHDESKSNETPASGSSNSQITQAVFEKE 248

Query: 262 KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPC 321
           KGE+QV+VVKQILWVNGMRYELQEIYGIGNSV+ DVD NDPGKECVICLSEPRDTTVLPC
Sbjct: 249 KGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPC 308

Query: 322 RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPE 360
           RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV GPE
Sbjct: 309 RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV-GPE 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255557020|ref|XP_002519543.1| mahogunin, putative [Ricinus communis] gi|223541406|gb|EEF42957.1| mahogunin, putative [Ricinus communis]

 Score =  412 bits (1059), Expect = e-112,   Method: Compositional matrix adjust.
 Identities = 248/366 (67%), Positives = 268/366 (73%), Gaps = 65/366 (17%)

Query: 1   MGNISSSSG-NGRRRHGSRRSHPPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNN 59
           MGNISSS+G +GRRRH +RRSHPPPPPP PPQ EITANRYVFAA TPYP QYPNSN P  
Sbjct: 1   MGNISSSAGVHGRRRHNNRRSHPPPPPPAPPQPEITANRYVFAAATPYPNQYPNSNPPPY 60

Query: 60  NNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHHHRGGGGGEPGQW---RYPCGPM 116
                   P             PP AMPVPLPAP+DHHH      +P  W   RYPCGPM
Sbjct: 61  YQYPGYHHPP------------PPHAMPVPLPAPYDHHHHRV---DPAHWVGGRYPCGPM 105

Query: 117 MAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGT 176
           MAPP PYVEHQKAVTIRNDVNLKKESL+LEADEENPGK LV+FTFDATV+GR        
Sbjct: 106 MAPPTPYVEHQKAVTIRNDVNLKKESLRLEADEENPGKFLVAFTFDATVSGR-------- 157

Query: 177 NKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVN 236
                                                ELLKEG +DVYPLAVKA+ASP N
Sbjct: 158 -------------------------------------ELLKEGEIDVYPLAVKAEASPAN 180

Query: 237 QNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGD 296
           Q+  +GN + GP NSQITQAVFEK+KGEYQV+V KQILWV+GMRYELQEIYGIGNSV+G+
Sbjct: 181 QDRQEGNQLSGPTNSQITQAVFEKDKGEYQVKVAKQILWVDGMRYELQEIYGIGNSVEGE 240

Query: 297 VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356
           VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR+QTNRCPICRQPVERLLEIKV
Sbjct: 241 VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRYQTNRCPICRQPVERLLEIKV 300

Query: 357 -NGPEE 361
            NGP+E
Sbjct: 301 NNGPDE 306

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356548246|ref|XP_003542514.1| PREDICTED: E3 ubiquitin-protein ligase MGRN1-like [Glycine max]

 Score =  407 bits (1046), Expect = e-111,   Method: Compositional matrix adjust.
 Identities = 220/339 (64%), Positives = 249/339 (73%), Gaps = 40/339 (11%)

Query: 33  EITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPA 92
           E+TAN++V          YP +  P            Y+ YP  GYYP P   MP PLPA
Sbjct: 37  EVTANQFV----------YPPAATP------------YHNYP--GYYPAPT-TMPAPLPA 71

Query: 93  PFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENP 152
           P+DHHHR     +P  W          P PYVEHQKAVTI+NDVN+KKE+L++E D+ENP
Sbjct: 72  PYDHHHRTAV--DP-MWGRYPVAAPPAPAPYVEHQKAVTIKNDVNIKKETLRIEPDDENP 128

Query: 153 GKLLVSFTFDATVAGRRRRLQPGTN---------KENLFAPVTVQFQRGLGQKFRQPSGT 203
           G+ LVSFTFDATV+G    L              KEN+  PVTV FQ+GLGQKF+QP+GT
Sbjct: 129 GRFLVSFTFDATVSGSITILFFAKEGEGCTLTPMKENVLPPVTVNFQQGLGQKFKQPAGT 188

Query: 204 GIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIP--GPANSQITQAVFEKE 261
           GIDFS FEE+ELLK G+MDVYP+A+KADAS  + + S  N  P  G +NSQITQAVFEKE
Sbjct: 189 GIDFSTFEESELLKVGDMDVYPVAIKADASSSDHDESKSNETPSSGSSNSQITQAVFEKE 248

Query: 262 KGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPC 321
           KGE+QV+VVKQILWVNGMRYELQEIYGIGNSV+ DVD NDPGKECVICLSEPRDTTVLPC
Sbjct: 249 KGEFQVKVVKQILWVNGMRYELQEIYGIGNSVESDVDGNDPGKECVICLSEPRDTTVLPC 308

Query: 322 RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPE 360
           RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV GPE
Sbjct: 309 RHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV-GPE 346

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|108707230|gb|ABF95025.1| zinc finger family protein, putative, expressed [Oryza sativa Japonica Group] gi|215712342|dbj|BAG94469.1| unnamed protein product [Oryza sativa Japonica Group]

 Score =  405 bits (1041), Expect = e-110,   Method: Compositional matrix adjust.
 Identities = 222/359 (61%), Positives = 251/359 (69%), Gaps = 51/359 (14%)

Query: 38  RYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPPPPPAMPVPLPAPFDHH 97
            YVFAA TPYP   P   NPN         P+YY  P  G Y PPPP++ VPLPAP+DHH
Sbjct: 52  HYVFAAATPYPP--PQYTNPNL--------PRYY--PQYGNYYPPPPSLQVPLPAPYDHH 99

Query: 98  HRG------------------------GGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIR 133
           HRG                        G  G P    +PCG   A P PYVEHQKA+TIR
Sbjct: 100 HRGGGAGVPAGGEFPPSAHPQHYPGWPGVSGRP----HPCGLQPAMPTPYVEHQKAITIR 155

Query: 134 NDVNLKKESLKLEADEENPGKLLVSFTFDATVAGR-------RRRLQPGTN--KENLFAP 184
           NDVNLKKE+L++E DEE PG+ LV+FTFDAT+AG        +  L       KE+L  P
Sbjct: 156 NDVNLKKETLRIEPDEECPGRFLVAFTFDATLAGSMTVYFFAKEELNCNLTAVKEDLIKP 215

Query: 185 VTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS-PVNQNGSDGN 243
           VTV F+ GLGQKFRQPSGTGI+FS+FE++ELLK+G+MDVYPLAVKA+ + PV+Q     +
Sbjct: 216 VTVSFKEGLGQKFRQPSGTGINFSVFEDSELLKQGDMDVYPLAVKAETTMPVDQKLEGED 275

Query: 244 SIPGPANSQITQAVFEK-EKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDP 302
                 NSQITQA+FEK E G+YQVRV  QILWVNG RYELQEIYGIGNSV+GD DANDP
Sbjct: 276 QKMKTPNSQITQALFEKKESGDYQVRVASQILWVNGTRYELQEIYGIGNSVEGDADANDP 335

Query: 303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE 361
           GKECVICLSEPRDTTVLPCRHMCMCS CAKVLR+QT RCPICRQPVERLLEIKVN   E
Sbjct: 336 GKECVICLSEPRDTTVLPCRHMCMCSECAKVLRYQTTRCPICRQPVERLLEIKVNNKAE 394

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224140185|ref|XP_002323465.1| predicted protein [Populus trichocarpa] gi|222868095|gb|EEF05226.1| predicted protein [Populus trichocarpa]

 Score =  401 bits (1031), Expect = e-109,   Method: Compositional matrix adjust.
 Identities = 203/285 (71%), Positives = 224/285 (78%), Gaps = 11/285 (3%)

Query: 86  MPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQKAVTIRNDVNLKKESLKL 145
           MPV  PAP+DH +R         W     P+M  P PYVEHQK VTIR+DVNLKKESL+L
Sbjct: 1   MPVQSPAPYDHRNRVDHPA--AHWVGGRYPVMPQPAPYVEHQKTVTIRSDVNLKKESLRL 58

Query: 146 EADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENLFA--------PVTVQFQRGLGQKF 197
           E DEENPG  LV+FTFDATVAG    +      E+           PVTV F +GLGQKF
Sbjct: 59  EPDEENPGSYLVTFTFDATVAGSITIIFFAKEGEDCVLTPTKADLPPVTVNFPQGLGQKF 118

Query: 198 RQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAV 257
           RQPSGTGIDF++FE  ELLKEG MD YPLAVKA+ASP N NG++GN +  P NSQ+TQA+
Sbjct: 119 RQPSGTGIDFTLFEGKELLKEGEMDAYPLAVKAEASPANHNGTEGNQMSEPMNSQVTQAI 178

Query: 258 FEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTT 317
           FEKEKGEYQVRV+KQILWVNG RYELQEIYGIGNSV+GDVDANDPGKECVICLSEPRDTT
Sbjct: 179 FEKEKGEYQVRVMKQILWVNGRRYELQEIYGIGNSVEGDVDANDPGKECVICLSEPRDTT 238

Query: 318 VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV-NGPEE 361
           VLPCRHMCMCSGCAKVLRFQTNRCPICR PV+RLLEIKV N P+E
Sbjct: 239 VLPCRHMCMCSGCAKVLRFQTNRCPICRHPVDRLLEIKVNNAPDE 283

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297746246|emb|CBI16302.3| unnamed protein product [Vitis vinifera]

 Score =  390 bits (1003), Expect = e-106,   Method: Compositional matrix adjust.
 Identities = 219/348 (62%), Positives = 244/348 (70%), Gaps = 34/348 (9%)

Query: 22  PPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPP 81
           P  PP   PQ EITANRYVFAA T Y + YPN N P            YY Y   G+YPP
Sbjct: 53  PALPPQLSPQPEITANRYVFAAATAYTSAYPNPNQP-----------YYYNY--NGHYPP 99

Query: 82  PPPAMPVPLPAPFDHHHRGGGGGEPGQW---RYPCGPMMAPPPPYVEHQKAVTIRNDVNL 138
               +PVPL   +   HR GG      W     PCG    PP PYVEHQKA+TIRNDVN+
Sbjct: 100 ----VPVPLSGSYTRLHRAGGA--IPNWVGGHQPCGVAPPPPAPYVEHQKAITIRNDVNI 153

Query: 139 KKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPG---------TNKENLFAPVTVQF 189
           KKE+L++E DEENPGK LV+FTFDAT AG    +  G         T KE +  PVTV F
Sbjct: 154 KKETLRVEPDEENPGKFLVAFTFDATAAGSITVVFFGKEGISGDLITVKEGVIEPVTVSF 213

Query: 190 QRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPA 249
           Q+GL QKF+QPSGTGIDFSMFEETEL++E ++ V PL VKA A P++ + S+GN      
Sbjct: 214 QQGLDQKFKQPSGTGIDFSMFEETELMQESDIKVCPLLVKAGAYPLDHSQSEGNLT---G 270

Query: 250 NSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVIC 309
           NSQITQAVFEKEKG  QVRVVKQILW  GMRYELQEI+GIGNSVD + D  D GKECVIC
Sbjct: 271 NSQITQAVFEKEKGVQQVRVVKQILWAEGMRYELQEIFGIGNSVDDNADGTDSGKECVIC 330

Query: 310 LSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN 357
           LSEPRDTTVLPCRHMCMC GCAKVLRFQ NRCPICRQPVE+LLEIKVN
Sbjct: 331 LSEPRDTTVLPCRHMCMCGGCAKVLRFQMNRCPICRQPVEQLLEIKVN 378

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	361
TAIR|locus:2075069	388	LOG2 "LOSS OF GDU 2" [Arabidop	0.648	0.603	0.689	5.6e-90
TAIR|locus:2143493	337	LUL1 "LOG2-LIKE UBIQUITIN LIGA	0.722	0.774	0.572	1.2e-75
TAIR|locus:2084026	299	LUL2 "LOG2-LIKE UBIQUITIN LIGA	0.637	0.769	0.630	3.1e-74
TAIR|locus:2179594	378	LUL3 "LOG2-LIKE UBIQUITIN LIGA	0.650	0.621	0.474	4.2e-56
TAIR|locus:2082440	359	LUL4 "LOG2-LIKE UBIQUITIN LIGA	0.648	0.651	0.466	7.8e-55
FB|FBgn0030514	789	CG9941 [Drosophila melanogaste	0.443	0.202	0.409	4e-29
UNIPROTKB|Q96PX1	679	RNF157 "RING finger protein 15	0.598	0.318	0.389	4.3e-29
UNIPROTKB|K7EIM7	332	MGRN1 "E3 ubiquitin-protein li	0.606	0.659	0.358	7.1e-29
MGI|MGI:2442484	685	Rnf157 "ring finger protein 15	0.598	0.315	0.385	7.2e-29
UNIPROTKB|E9PB19	531	MGRN1 "E3 ubiquitin-protein li	0.606	0.412	0.358	2e-28

TAIR|locus:2075069 LOG2 "LOSS OF GDU 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 875 (313.1 bits), Expect = 5.6e-90, Sum P(2) = 5.6e-90
 Identities = 173/251 (68%), Positives = 203/251 (80%)

Query:   123 YVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGR---------RRRLQ 173
             YVEHQKAVTIRNDVNLKKESL+LE D +NPG+ LVSFTFDATV+GR             +
Sbjct:   123 YVEHQKAVTIRNDVNLKKESLRLEPDPDNPGRFLVSFTFDATVSGRISVIFFAKESEDCK 182

Query:   174 PGTNKENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEG-NMDVYPLAVKADA 232
                 KE++  P+T+ F++GLGQKF+Q SG+GIDFS+FE+ EL K   + ++YPLAVKA+A
Sbjct:   183 LTATKEDILPPITLDFEKGLGQKFKQSSGSGIDFSVFEDVELFKAAADTEIYPLAVKAEA 242

Query:   233 SPVN-QNGSDGNSIPGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGN 291
             +P   +N  +  S  G  N+QITQAV+EK+KGE ++RVVKQILWVNG RYELQEIYGIGN
Sbjct:   243 APSGGENEEEERS--GSKNAQITQAVYEKDKGEIKIRVVKQILWVNGTRYELQEIYGIGN 300

Query:   292 SVDGDVD----ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
             +V+GD D    ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP
Sbjct:   301 TVEGDDDSADDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 360

Query:   348 VERLLEIKVNG 358
             VERLLEIKV+G
Sbjct:   361 VERLLEIKVHG 371

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0080144 "amino acid homeostasis" evidence=IGI

TAIR|locus:2143493 LUL1 "LOG2-LIKE UBIQUITIN LIGASE1" [Arabidopsis thaliana (taxid:3702)]

 Score = 740 (265.6 bits), Expect = 1.2e-75, Sum P(2) = 1.2e-75
 Identities = 162/283 (57%), Positives = 189/283 (66%)

Query:    87 PVPLPAPFDH-HHRXXXXXE-PGQWRYXXXXXXXXXXXYVEHQKAVTIRNDVNLKKESLK 144
             P  LP  F+H HH      + P    +           YV HQKAVTIRNDVNLKK++L 
Sbjct:    66 PPMLPYNFNHLHHYPPNSYQLPHPLFHGGRYPILPPPTYV-HQKAVTIRNDVNLKKKTLT 124

Query:   145 LEADEENPGKLLVSFTFDATVAGRRRRLQPGTN---------KENLFAPVTVQFQRGLGQ 195
             L  D ENP +LLVSFTFDA++ GR   +   T          KE+   P+T  F  GLGQ
Sbjct:   125 LIPDPENPNRLLVSFTFDASMPGRITVVFFATEDAECNLRATKEDTLPPITFDFGEGLGQ 184

Query:   196 KFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQ 255
             KF Q SGTGID + F+++EL KE + DV+PLAVKA+A+P  +    G S  G  N QITQ
Sbjct:   185 KFIQSSGTGIDLTAFKDSELFKEVDTDVFPLAVKAEATPAEE----GKS--GSTNVQITQ 238

Query:   256 AVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRD 315
              V+ KEKGE ++ VVKQILWVN  RYEL EIYGI N+VDG    +D GKECV+CLSEPRD
Sbjct:   239 VVYTKEKGEIKIEVVKQILWVNKRRYELLEIYGIENTVDG----SDEGKECVVCLSEPRD 294

Query:   316 TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNG 358
             TTVLPCRHMCMCSGCAK LRFQTN CP+CRQPVE LLEI  NG
Sbjct:   295 TTVLPCRHMCMCSGCAKALRFQTNLCPVCRQPVEMLLEINKNG 337

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2084026 LUL2 "LOG2-LIKE UBIQUITIN LIGASE2" [Arabidopsis thaliana (taxid:3702)]

 Score = 749 (268.7 bits), Expect = 3.1e-74, P = 3.1e-74
 Identities = 155/246 (63%), Positives = 184/246 (74%)

Query:   123 YVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRL---QPGTN-- 177
             YVEHQ+AVTIRND+NLKKE+L+LE DE+NPGK L+SFTFDA+V G    +   + G +  
Sbjct:    54 YVEHQEAVTIRNDINLKKETLRLEPDEQNPGKFLLSFTFDASVPGSITVMFFAKEGKDCN 113

Query:   178 ----KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
                 KE+LF    V F +GL Q+F+Q  GTGIDFS   E +L++    DVY +AVKA+  
Sbjct:   114 LIATKEDLFPSTQVSFAKGLEQRFKQACGTGIDFSDMSEADLVEANETDVYHVAVKAEV- 172

Query:   234 PVNQNGSDGNSIPGPANSQITQAVFEKE-KGEYQVRVVKQILWVNGMRYELQEIYGIGNS 292
              V++   D +   G  N QIT  V EK+ KGEY+ RVVKQILWVNG RY LQEIYGIGN+
Sbjct:   173 -VSE---DDHPESGTPNRQITHVVLEKDHKGEYKARVVKQILWVNGNRYVLQEIYGIGNT 228

Query:   293 VDGD-VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL 351
             VD +  DAN+ GKECVICLSEPRDTTVLPCRHMCMCSGCAK+LRFQTN CPICRQPV+RL
Sbjct:   229 VDDNGEDANERGKECVICLSEPRDTTVLPCRHMCMCSGCAKLLRFQTNLCPICRQPVDRL 288

Query:   352 LEIKVN 357
             LEI VN
Sbjct:   289 LEITVN 294

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2179594 LUL3 "LOG2-LIKE UBIQUITIN LIGASE3" [Arabidopsis thaliana (taxid:3702)]

 Score = 578 (208.5 bits), Expect = 4.2e-56, P = 4.2e-56
 Identities = 120/253 (47%), Positives = 160/253 (63%)

Query:   123 YVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPGTNKENL- 181
             YVEHQ A  ++NDVN+ K +++L AD+ NPG  LVSF FDA   G    +  G  +    
Sbjct:   128 YVEHQTAKKVKNDVNVNKATVRLVADDLNPGHYLVSFVFDALFDGSFTIIFFGEEESKCT 187

Query:   182 --------FAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
                     F P+ V FQ+G GQKF Q  GTGID   F   +L K    +VYPL + A+ +
Sbjct:   188 IVPHLPEAFPPIKVPFQKGAGQKFLQAPGTGIDLGFFSLDDLSKPSPEEVYPLVISAE-T 246

Query:   234 PVNQNGSDGNSIPGPANSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNS 292
              ++ +      +    + QITQAV EK   G ++V+V+KQILW+ G RYELQE+YGI NS
Sbjct:   247 VISPSSVSEEPL---VHKQITQAVLEKTNDGSFKVKVMKQILWIEGERYELQELYGIDNS 303

Query:   293 VDGDVDAN---DPG-KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
             +     A+   D G KECVICL+EP+DT V+PCRH+C+CS CA+ LRFQTN+CPICRQP+
Sbjct:   304 ITQGTAASGLEDTGGKECVICLTEPKDTAVMPCRHLCLCSDCAEELRFQTNKCPICRQPI 363

Query:   349 ERLLEIKVNGPEE 361
               L++IKV   +E
Sbjct:   364 HELVKIKVESSDE 376

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

TAIR|locus:2082440 LUL4 "LOG2-LIKE UBIQUITIN LIGASE4" [Arabidopsis thaliana (taxid:3702)]

 Score = 566 (204.3 bits), Expect = 7.8e-55, P = 7.8e-55
 Identities = 117/251 (46%), Positives = 161/251 (64%)

Query:   123 YVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRR-----RLQPGTN 177
             Y+E Q A  +RNDVN+ +++++LE D+  PG  LVSF FDA   G        + +P   
Sbjct:   112 YLEQQNAKKVRNDVNVHRDTVRLEVDDLVPGHHLVSFVFDALFDGSFTITFFAKEEPNCT 171

Query:   178 K----ENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
                    +++P    FQ+G GQKF QPSGTG D S F   +L K    DVYPL + A+  
Sbjct:   172 IIPQFPEVYSPTRFHFQKGPGQKFLQPSGTGTDLSFFVLDDLSKPLEEDVYPLVISAETI 231

Query:   234 PVNQNG-SDGNSIPGPANSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYG-IG 290
              ++ N  S+ +S+    + Q+TQAV EK+  G ++V+VVKQILW+ G+RYEL+E+YG   
Sbjct:   232 -ISPNSISEQSSV----HKQVTQAVLEKDNDGSFKVKVVKQILWIEGVRYELRELYGSTT 286

Query:   291 NSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
                   +D +  G ECVIC++E +DT VLPCRH+CMCS CAK LR Q+N+CPICRQP+E 
Sbjct:   287 QGAASGLDESGSGTECVICMTEAKDTAVLPCRHLCMCSDCAKELRLQSNKCPICRQPIEE 346

Query:   351 LLEIKVNGPEE 361
             LLEIK+N  +E
Sbjct:   347 LLEIKMNSSDE 357

GO:0005737 "cytoplasm" evidence=ISM

GO:0008270 "zinc ion binding" evidence=IEA;ISS

GO:0004842 "ubiquitin-protein ligase activity" evidence=IDA

FB|FBgn0030514 CG9941 [Drosophila melanogaster (taxid:7227)]

 Score = 321 (118.1 bits), Expect = 4.0e-29, Sum P(2) = 4.0e-29
 Identities = 72/176 (40%), Positives = 101/176 (57%)

Query:   186 TVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSI 245
             T  +++G+ Q F QPS    +     E EL      + YP+A+      V + GSD    
Sbjct:   203 TYHYEKGINQCFSQPSHV-FNPQQMPEDELGYSPGREQYPVAIHC----VVEEGSDECR- 256

Query:   246 PGPANSQITQAVFEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGN------SVDGDVDA 299
                +++ I       E G Y +R +KQ ++V+G+ Y LQEIYGI N      S+D ++D 
Sbjct:   257 --QSHTTICVIDHHPENGSYVLRALKQKIFVDGLCYLLQEIYGIENKAVNKTSLDEEID- 313

Query:   300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK 355
              D G ECVIC+SE RDT +LPCRH+C+C+ CA  LR+Q N CPICR P   LL+I+
Sbjct:   314 -DHGSECVICMSETRDTLILPCRHLCLCNSCADSLRYQANNCPICRAPFRALLQIR 368

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|Q96PX1 RNF157 "RING finger protein 157" [Homo sapiens (taxid:9606)]

 Score = 331 (121.6 bits), Expect = 4.3e-29, P = 4.3e-29
 Identities = 97/249 (38%), Positives = 132/249 (53%)

Query:   130 VTIRND-VNLKK--ESLKLEADEENPGKLL--VSFTFD--ATVA-----GRRRRLQPGTN 177
             V IR D + L K  E +K   +E +  K+   V FTFD  A VA           Q G  
Sbjct:    88 VNIRKDTLRLVKCAEEVKSPGEEASKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIA 147

Query:   178 ----KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
                 K+N     TVQ++RG+ Q+F  PS T +D S + E EL  + + +VYPL V A   
Sbjct:   148 SYIPKDNSLQSETVQYKRGVCQQFCLPSHT-VDPSEWAEEELGFDLDREVYPLVVHAVVD 206

Query:   234 PVNQNGSDGNSIPGPANSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNS 292
                    +G+   G  +  +    FEK   G + V+ +KQ   V+G+ Y LQEIYGI N 
Sbjct:   207 -------EGDEYFG--HCHVLLGTFEKHTDGTFCVKPLKQKQVVDGVSYLLQEIYGIENK 257

Query:   293 V---DGDV---DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ 346
                 D  V   + +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR 
Sbjct:   258 YNTQDSKVAEDEVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRL 317

Query:   347 PVERLLEIK 355
             P   LL+I+
Sbjct:   318 PFRALLQIR 326

GO:0008270 "zinc ion binding" evidence=IEA

UNIPROTKB|K7EIM7 MGRN1 "E3 ubiquitin-protein ligase MGRN1" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 89/248 (35%), Positives = 131/248 (52%)

Query:   130 VTIRND----VNLKKESLKLEADEENPGKLL-VSFTFDA----TVAGRRRRLQPGTNKEN 180
             V IR D    V  K ++     D + P  L  + FTFDA     +    +  +   N   
Sbjct:    52 VNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRA 111

Query:   181 LFAPV-------TVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
             +++P        TV ++RG+ Q+F  PS   IDFS +++ EL  + +  V+P+ ++A   
Sbjct:   112 VYSPKSPSLQSETVHYKRGVSQQFSLPSFK-IDFSEWKDDELNFDLDRGVFPVVIQA--- 167

Query:   234 PVNQNGSDGNSIPGPANSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNS 292
              V   G     + G A+  +  A FEK   G + V+ +KQ   V+ + Y LQEIYGI N 
Sbjct:   168 -VVDEGDAVVEVTGHAH--VLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENK 224

Query:   293 VDGDV----DAN-DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
              + +     D N D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P
Sbjct:   225 NNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLP 284

Query:   348 VERLLEIK 355
                LL+I+
Sbjct:   285 FRALLQIR 292

GO:0008270 "zinc ion binding" evidence=IEA

MGI|MGI:2442484 Rnf157 "ring finger protein 157" [Mus musculus (taxid:10090)]

 Score = 329 (120.9 bits), Expect = 7.2e-29, P = 7.2e-29
 Identities = 96/249 (38%), Positives = 130/249 (52%)

Query:   130 VTIRND-VNLKK--ESLKLEADEENPGKLL--VSFTFD--ATVA-----GRRRRLQPGTN 177
             + IR D + L K  E +K   +E    K+   V FTFD  A VA           Q G  
Sbjct:    88 INIRKDTLRLVKCAEEVKSHGEEAGKAKVHYNVEFTFDTDARVAITIYYQATEEFQNGIA 147

Query:   178 ----KENLFAPVTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
                 K+N     TV ++RG+ Q+F  PS T +D S + E EL  + + +VYPL V A   
Sbjct:   148 SYIPKDNSLQSETVHYKRGVFQQFCLPSHT-VDPSEWAEEELGFDLDREVYPLVVHAVVD 206

Query:   234 PVNQNGSDGNSIPGPANSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNS 292
                    +G+   G  +  +    FEK   G + V+ +KQ   V+G+ Y LQEIYGI N 
Sbjct:   207 -------EGDEYFG--HCHVLLGTFEKHPDGTFCVKPLKQKQVVDGVSYLLQEIYGIENK 257

Query:   293 V---DGDV---DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ 346
                 D  V   D +D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR 
Sbjct:   258 YNTQDSKVAEDDVSDNSAECVVCLSDVRDTLILPCRHLCLCNTCADTLRYQANNCPICRL 317

Query:   347 PVERLLEIK 355
             P   LL+I+
Sbjct:   318 PFRALLQIR 326

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0008270 "zinc ion binding" evidence=IEA

GO:0046872 "metal ion binding" evidence=IEA

UNIPROTKB|E9PB19 MGRN1 "E3 ubiquitin-protein ligase MGRN1" [Homo sapiens (taxid:9606)]

 Score = 321 (118.1 bits), Expect = 2.0e-28, P = 2.0e-28
 Identities = 89/248 (35%), Positives = 131/248 (52%)

Query:   130 VTIRND----VNLKKESLKLEADEENPGKLL-VSFTFDA----TVAGRRRRLQPGTNKEN 180
             V IR D    V  K ++     D + P  L  + FTFDA     +    +  +   N   
Sbjct:    88 VNIRKDSLRLVRYKDDADSPTEDGDKPRVLYSLEFTFDADARVAITIYCQASEEFLNGRA 147

Query:   181 LFAPV-------TVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADAS 233
             +++P        TV ++RG+ Q+F  PS   IDFS +++ EL  + +  V+P+ ++A   
Sbjct:   148 VYSPKSPSLQSETVHYKRGVSQQFSLPSFK-IDFSEWKDDELNFDLDRGVFPVVIQA--- 203

Query:   234 PVNQNGSDGNSIPGPANSQITQAVFEKEK-GEYQVRVVKQILWVNGMRYELQEIYGIGNS 292
              V   G     + G A+  +  A FEK   G + V+ +KQ   V+ + Y LQEIYGI N 
Sbjct:   204 -VVDEGDAVVEVTGHAH--VLLAAFEKHMDGSFSVKPLKQKQIVDRVSYLLQEIYGIENK 260

Query:   293 VDGDV----DAN-DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
              + +     D N D   ECV+CLS+ RDT +LPCRH+C+C+ CA  LR+Q N CPICR P
Sbjct:   261 NNQETKPSDDENSDNSNECVVCLSDLRDTLILPCRHLCLCTSCADTLRYQANNCPICRLP 320

Query:   348 VERLLEIK 355
                LL+I+
Sbjct:   321 FRALLQIR 328

GO:0008270 "zinc ion binding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q9S752	LOFG2_ARATH	6, ., 3, ., 2, ., -	0.6780	0.6814	0.6340	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00023187001	SubName- Full=Chromosome chr8 scaffold_29, whole genome shotgun sequence; (272 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	CIPK10	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (436 aa)							•		0.483
	GSVIVG00020576001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (742 aa)							•		0.483

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	361
pfam13920	49	pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RI	6e-19
pfam13923	45	pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RI	5e-11
cd00162	45	cd00162, RING, RING-finger (Really Interesting New	4e-10
pfam13639	46	pfam13639, zf-RING_2, Ring finger domain	6e-10
smart00184	40	smart00184, RING, Ring finger	2e-06
pfam00097	40	pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING	1e-04
pfam04652	315	pfam04652, DUF605, Vta1 like	0.002
PHA02929	238	PHA02929, PHA02929, N1R/p28-like protein; Provisio	0.002
COG5540	374	COG5540, COG5540, RING-finger-containing ubiquitin	0.002
COG5236	493	COG5236, COG5236, Uncharacterized conserved protei	0.004

>gnl|CDD|222454 pfam13920, zf-C3HC4_3, Zinc finger, C3HC4 type (RING finger)

 Score = 79.0 bits (195), Expect = 6e-19
 Identities = 26/47 (55%), Positives = 31/47 (65%), Gaps = 1/47 (2%)

Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
             CVICL  PR+   LPC H+C+C  CAK LR    +CPICRQP+E 
Sbjct: 3   DLCVICLERPRNVVFLPCGHLCLCEECAKRLR-SKKKCPICRQPIES 48

Length = 49

>gnl|CDD|206094 pfam13923, zf-C3HC4_2, Zinc finger, C3HC4 type (RING finger)

 Score = 56.7 bits (137), Expect = 5e-11
 Identities = 19/43 (44%), Positives = 23/43 (53%), Gaps = 2/43 (4%)

Query: 305 ECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQ 346
           EC ICL   RD  VL PC H+  C  C      + ++CPICR 
Sbjct: 4   ECPICLDLLRDPVVLTPCGHVF-CRECILRYLKKKSKCPICRT 45

Length = 45

>gnl|CDD|238093 cd00162, RING, RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

 Score = 54.4 bits (131), Expect = 4e-10
 Identities = 22/46 (47%), Positives = 27/46 (58%), Gaps = 3/46 (6%)

Query: 305 ECVICLSEPRDTTVL-PCRHMCMCSGCA-KVLRFQTNRCPICRQPV 348
           EC ICL E R+  VL PC H+  C  C  K L+   N CP+CR P+
Sbjct: 1   ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI 45

Length = 45

>gnl|CDD|222279 pfam13639, zf-RING_2, Ring finger domain

 Score = 53.9 bits (130), Expect = 6e-10
 Identities = 18/46 (39%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 305 ECVICLSE---PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
           EC ICL E     +  VLPC H      C       +N CP+CR P
Sbjct: 2   ECPICLDEFEPGEEVVVLPCGH-VFHKECLDKWLRSSNTCPLCRAP 46

Length = 46

>gnl|CDD|214546 smart00184, RING, Ring finger

 Score = 43.7 bits (103), Expect = 2e-06
 Identities = 19/41 (46%), Positives = 21/41 (51%), Gaps = 3/41 (7%)

Query: 306 CVICLSE-PRDTTVLPCRHMCMCSGCA-KVLRFQTNRCPIC 344
           C ICL E  +D  +LPC H   C  C  K L    N CPIC
Sbjct: 1   CPICLEEYLKDPVILPCGHT-FCRSCIRKWLESGNNTCPIC 40

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s). Length = 40

>gnl|CDD|215715 pfam00097, zf-C3HC4, Zinc finger, C3HC4 type (RING finger)

 Score = 39.0 bits (91), Expect = 1e-04
 Identities = 19/41 (46%), Positives = 23/41 (56%), Gaps = 3/41 (7%)

Query: 306 CVICLSEPRD-TTVLPCRHMCMCSGC-AKVLRFQTNRCPIC 344
           C ICL EP+D  T+LPC H+  CS C    L      CP+C
Sbjct: 1   CPICLEEPKDPVTILPCGHL-FCSKCILSWLESGNVTCPLC 40

The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid. Many proteins containing a RING finger play a key role in the ubiquitination pathway. Length = 40

>gnl|CDD|218191 pfam04652, DUF605, Vta1 like

 Score = 39.7 bits (93), Expect = 0.002
 Identities = 20/85 (23%), Positives = 29/85 (34%), Gaps = 3/85 (3%)

Query: 20  SHPPPPPPTPPQQEITANRYVFA---AVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPG 76
           S  P  P  P   E  ++    +   A + + +  P  +  +  N +  P P     PP 
Sbjct: 189 SSSPGVPSFPSPPEDPSSPSDSSLPPAPSSFQSDTPPPSPESPTNPSPPPGPAAPPPPPV 248

Query: 77  GYYPPPPPAMPVPLPAPFDHHHRGG 101
              PP   A P P  A       GG
Sbjct: 249 QQVPPLSTAKPTPPSASATPAPIGG 273

Vta1 (VPS20-associated protein 1) is a positive regulator of Vps4. Vps4 is an ATPase that is required in the multivesicular body (MVB) sorting pathway to dissociate the endosomal sorting complex required for transport (ESCRT). Vta1 promotes correct assembly of Vps4 and stimulates its ATPase activity through its conserved Vta1/SBP1/LIP5 region. Length = 315

>gnl|CDD|222944 PHA02929, PHA02929, N1R/p28-like protein; Provisional

 Score = 39.0 bits (91), Expect = 0.002
 Identities = 17/53 (32%), Positives = 25/53 (47%), Gaps = 9/53 (16%)

Query: 303 GKECVICLSEPRDTT-------VLP-CRHMCMCSGCAKVLRFQTNRCPICRQP 347
            KEC IC+ +  D         +L  C H+  C  C  + + + N CP+CR P
Sbjct: 174 DKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTP 225

Length = 238

>gnl|CDD|227827 COG5540, COG5540, RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

 Score = 39.6 bits (92), Expect = 0.002
 Identities = 19/51 (37%), Positives = 25/51 (49%), Gaps = 3/51 (5%)

Query: 301 DPGKECVICLS---EPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
           D G EC IC+S   +     VLPC H        K L   +N+CP+CR  +
Sbjct: 321 DKGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAI 371

Length = 374

>gnl|CDD|227561 COG5236, COG5236, Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

 Score = 38.8 bits (90), Expect = 0.004
 Identities = 19/65 (29%), Positives = 24/65 (36%), Gaps = 4/65 (6%)

Query: 291 NSVDGDVDANDPGKE-CVICLSEPRDTTVLPCRHMCMCSGCAKVLRF--QTNRCPICRQP 347
           N      D  D     C IC      +   PC H  +C  CA  LR       CP+CR  
Sbjct: 48  NLTTSSADDTDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTE 106

Query: 348 VERLL 352
            E ++
Sbjct: 107 TEAVV 111

Length = 493

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	361
KOG4265	349	consensus Predicted E3 ubiquitin ligase [Posttrans	100.0
PF13920	50	zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger);	99.32
KOG4172	62	consensus Predicted E3 ubiquitin ligase [Posttrans	99.29
KOG4275	350	consensus Predicted E3 ubiquitin ligase [Posttrans	98.97
KOG0823	230	consensus Predicted E3 ubiquitin ligase [Posttrans	98.85
PLN03208	193	E3 ubiquitin-protein ligase RMA2; Provisional	98.82
PHA02929	238	N1R/p28-like protein; Provisional	98.81
KOG0317	293	consensus Predicted E3 ubiquitin ligase, integral	98.79
PF13639	44	zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C	98.74
KOG1571	355	consensus Predicted E3 ubiquitin ligase [Posttrans	98.7
PF13923	39	zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger);	98.68
PF15227	42	zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB:	98.49
KOG0320	187	consensus Predicted E3 ubiquitin ligase [Posttrans	98.48
cd00162	45	RING RING-finger (Really Interesting New Gene) dom	98.47
PHA02926	242	zinc finger-like protein; Provisional	98.42
PF14634	44	zf-RING_5: zinc-RING finger domain	98.36
smart00184	39	RING Ring finger. E3 ubiquitin-protein ligase acti	98.33
KOG1100	207	consensus Predicted E3 ubiquitin ligase [Posttrans	98.33
PF00097	41	zf-C3HC4: Zinc finger, C3HC4 type (RING finger); I	98.31
TIGR00599	397	rad18 DNA repair protein rad18. This family is bas	98.31
COG5540	374	RING-finger-containing ubiquitin ligase [Posttrans	98.29
smart00504	63	Ubox Modified RING finger domain. Modified RING fi	98.29
KOG4628	348	consensus Predicted E3 ubiquitin ligase [Posttrans	98.21
COG5243	491	HRD1 HRD ubiquitin ligase complex, ER membrane com	98.16
PF12678	73	zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766	98.15
COG5574	271	PEX10 RING-finger-containing E3 ubiquitin ligase [	98.13
KOG1785	563	consensus Tyrosine kinase negative regulator CBL [	98.12
KOG2164	513	consensus Predicted E3 ubiquitin ligase [Posttrans	98.1
PF13445	43	zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.	97.96
KOG2177	386	consensus Predicted E3 ubiquitin ligase [Posttrans	97.95
KOG0802	543	consensus E3 ubiquitin ligase [Posttranslational m	97.93
KOG0287	442	consensus Postreplication repair protein RAD18 [Re	97.78
COG5432	391	RAD18 RING-finger-containing E3 ubiquitin ligase [	97.76
KOG0978	698	consensus E3 ubiquitin ligase involved in syntaxin	97.73
KOG0824	324	consensus Predicted E3 ubiquitin ligase [Posttrans	97.7
PF04564	73	U-box: U-box domain; InterPro: IPR003613 Quality c	97.69
COG5236	493	Uncharacterized conserved protein, contains RING Z	97.67
KOG1039	344	consensus Predicted E3 ubiquitin ligase [Posttrans	97.53
TIGR00570	309	cdk7 CDK-activating kinase assembly factor MAT1. A	97.47
KOG1924	1102	consensus RhoA GTPase effector DIA/Diaphanous [Sig	97.45
KOG0311	381	consensus Predicted E3 ubiquitin ligase [Posttrans	97.26
KOG4692	489	consensus Predicted E3 ubiquitin ligase [Posttrans	97.23
KOG0828	636	consensus Predicted E3 ubiquitin ligase [Posttrans	97.19
PF14447	55	Prok-RING_4: Prokaryotic RING finger family 4	96.99
PF12861	85	zf-Apc11: Anaphase-promoting complex subunit 11 RI	96.99
KOG4159	398	consensus Predicted E3 ubiquitin ligase [Posttrans	96.98
smart00744	49	RINGv The RING-variant domain is a C4HC3 zinc-fing	96.41
PF04641	260	Rtf2: Rtf2 RING-finger	96.38
PF14835	65	zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM	96.27
COG5152	259	Uncharacterized conserved protein, contains RING a	96.21
KOG2879	298	consensus Predicted E3 ubiquitin ligase [Posttrans	96.15
KOG0825	1134	consensus PHD Zn-finger protein [General function	96.11
KOG0804	493	consensus Cytoplasmic Zn-finger protein BRAP2 (BRC	96.1
KOG0297	391	consensus TNF receptor-associated factor [Signal t	95.85
KOG1813	313	consensus Predicted E3 ubiquitin ligase [Posttrans	95.71
COG5219	1525	Uncharacterized conserved protein, contains RING Z	95.26
KOG3039	303	consensus Uncharacterized conserved protein [Funct	94.95
KOG2113	394	consensus Predicted RNA binding protein, contains	94.9
KOG4367	699	consensus Predicted Zn-finger protein [Function un	94.72
KOG1002	791	consensus Nucleotide excision repair protein RAD16	94.68
PF03854	50	zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc	94.59
KOG1814	445	consensus Predicted E3 ubiquitin ligase [Posttrans	94.47
KOG3002	299	consensus Zn finger protein [General function pred	94.19
PF14570	48	zf-RING_4: RING/Ubox like zinc-binding domain; PDB	94.19
PF07800	162	DUF1644: Protein of unknown function (DUF1644); In	94.18
KOG2660	331	consensus Locus-specific chromosome binding protei	94.01
KOG1734	328	consensus Predicted RING-containing E3 ubiquitin l	93.77
PF05883	134	Baculo_RING: Baculovirus U-box/Ring-like domain; I	93.73
KOG1001	674	consensus Helicase-like transcription factor HLTF/	93.39
KOG4739	233	consensus Uncharacterized protein involved in syna	93.12
KOG0827	465	consensus Predicted E3 ubiquitin ligase [Posttrans	92.92
KOG1645	463	consensus RING-finger-containing E3 ubiquitin liga	92.64
PF05290	140	Baculo_IE-1: Baculovirus immediate-early protein (	92.26
KOG4185	296	consensus Predicted E3 ubiquitin ligase [Posttrans	92.05
COG5175	480	MOT2 Transcriptional repressor [Transcription]	91.82
PHA03096	284	p28-like protein; Provisional	91.75
KOG1428	3738	consensus Inhibitor of type V adenylyl cyclases/Ne	91.72
PF11793	70	FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.	91.64
PHA02825	162	LAP/PHD finger-like protein; Provisional	91.58
KOG2932	389	consensus E3 ubiquitin ligase involved in ubiquiti	91.12
COG5194	88	APC11 Component of SCF ubiquitin ligase and anapha	90.84
COG5222	427	Uncharacterized conserved protein, contains RING Z	90.15
KOG0826	357	consensus Predicted E3 ubiquitin ligase involved i	90.05
PF11789	57	zf-Nse: Zinc-finger of the MIZ type in Nse subunit	88.74
KOG4445	368	consensus Uncharacterized conserved protein, conta	87.61
PF10272	358	Tmpp129: Putative transmembrane protein precursor;	87.15
PHA02862	156	5L protein; Provisional	86.66
KOG3113	293	consensus Uncharacterized conserved protein [Funct	85.98
KOG2930	114	consensus SCF ubiquitin ligase, Rbx1 component [Po	81.75
PF10367	109	Vps39_2: Vacuolar sorting protein 39 domain 2; Int	81.43
KOG3842	429	consensus Adaptor protein Pellino [Signal transduc	81.36
KOG3899	381	consensus Uncharacterized conserved protein [Funct	81.27
COG5220	314	TFB3 Cdk activating kinase (CAK)/RNA polymerase II	81.19
KOG3799	169	consensus Rab3 effector RIM1 and related proteins,	81.13
KOG1493	84	consensus Anaphase-promoting complex (APC), subuni	80.38

>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=100.00  E-value=3.6e-61  Score=467.69  Aligned_cols=240  Identities=55%  Similarity=0.893  Sum_probs=213.3

Q ss_pred             CCCCCCCCCccccceeeeEeeceEecCcceEEEEcCCCCCeEEEEEEEeccCCeeeEEEecc---------CCCCCCCCC
Q 046132          114 GPMMAPPPPYVEHQKAVTIRNDVNLKKESLKLEADEENPGKLLVSFTFDATVAGRRRRLQPG---------TNKENLFAP  184 (361)
Q Consensus       114 ~~~~~~~~p~ve~q~t~tIrn~VNlrK~SLRl~~~~~~~~~~~l~F~FDa~~~~~ItI~~~~---------~~~~~~~~p  184 (361)
                      .-.+..+-+|| ||+|+||||+||++|++++++.|+.+++.|+|+|+|||+..|+|+|+|+.         ..++..+.+
T Consensus        97 ~~~~~~~~~~~-~~~av~i~~d~~l~k~~~~l~~d~~~P~~~~~sf~fda~~~g~itV~~fakE~~~c~~~~~~~~~~~~  175 (349)
T KOG4265|consen   97 LLVCAPPDQYL-HQKAVTIRNDVNLDKETLRLDPDPLTPGLLLLSFTFDALAQGAITVLFFAKEEVLCGLVLLVPDELPS  175 (349)
T ss_pred             ceEecCCCccc-cccceeccchhhcccceEEeccCCCCcceeEEEEEeccccCccEEEEEeccccccccccccccccCCC
Confidence            33455666799 99999999999999999999999999999999999999999999999943         334555889


Q ss_pred             eeEeecCCCCceeeCCCCCcccCCccchhhhhccCCCceeeEEEEEeecCCCCCCCCCCCCCCCCcchhhhhhhhhc-cC
Q 046132          185 VTVQFQRGLGQKFRQPSGTGIDFSMFEETELLKEGNMDVYPLAVKADASPVNQNGSDGNSIPGPANSQITQAVFEKE-KG  263 (361)
Q Consensus       185 ~~~~f~~Gl~Q~F~q~~~~~id~~~~~~~eL~~~~~~~~~PLVI~~~~~~~~~~~~~~~~~~~~~~~qit~a~lek~-~~  263 (361)
                      +|++|++|++|+|.|++ ++||++.|+++||.++.++++|||+|++++....    .+  ....++.++|+++.+++ +|
T Consensus       176 ~t~~f~~gl~Q~F~q~s-~~~D~~~~~~~~L~~~~~~~vyplsi~~~~~~~~----~~--~~~~~~~~~tq~v~~~~~~G  248 (349)
T KOG4265|consen  176 ITVHFEKGLGQLFLQPS-TGIDFSVMSIDDLSLSLDRRVYPLSISAEVQPSD----VV--ESMGVFHVITQAVYEKDEKG  248 (349)
T ss_pred             eeEEcccchhhhhcCCc-cccchhhcchhhhcccccCCeeeEEEEEEEeccc----cc--cccceeeEEEeeeeccCcCC
Confidence            99999999999999999 8999999999999998899999999999987543    11  22235889999999985 89


Q ss_pred             ceeeeeeeeeeeecCeeeeehhhhcCCCCCCCCC--CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCC
Q 046132          264 EYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDV--DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRC  341 (361)
Q Consensus       264 ~~~vrvlkQ~l~v~g~~yeLqeiygi~~s~~~~~--~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~C  341 (361)
                      +++++++||++|++|.+|+|||||||+++..+..  ++.+++++|+|||++.+|+++|||||+|+|.+|++.|+.+.++|
T Consensus       249 ~~~~~~~kQ~~~v~g~~y~LqEiyGien~~v~~~~~~~~~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~C  328 (349)
T KOG4265|consen  249 SIKIKVLKQILWVDGTRYLLQEIYGIENSTVEGTDADESESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNC  328 (349)
T ss_pred             ceeeeeeeeEEEEeCceeeeehhhccccCCCCCCccccccCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCC
Confidence            9999999999999999999999999996654332  24577899999999999999999999999999999999999999


Q ss_pred             ccccccccceEEEEcCCCCC
Q 046132          342 PICRQPVERLLEIKVNGPEE  361 (361)
Q Consensus       342 PICR~~I~~ll~I~v~~~~~  361 (361)
                      ||||++|..+++|+++++++
T Consensus       329 PICRqpi~~ll~i~~~~~~~  348 (349)
T KOG4265|consen  329 PICRQPIEELLEIYVNKEDR  348 (349)
T ss_pred             CccccchHhhheeccccccC
Confidence            99999999999999998764

>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A

Probab=99.32  E-value=7.2e-13  Score=96.18  Aligned_cols=49  Identities=49%  Similarity=1.233  Sum_probs=43.7

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL  351 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l  351 (361)
                      +.+|.||+++.++++++||||++||..|+.+|+....+||+||++|+++
T Consensus         2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~~V   50 (50)
T PF13920_consen    2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIESV   50 (50)
T ss_dssp             HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-SEE
T ss_pred             cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhcCC
Confidence            4689999999999999999999999999999988889999999999764

...

>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=99.29  E-value=1.9e-13  Score=100.96  Aligned_cols=52  Identities=38%  Similarity=0.983  Sum_probs=46.5

Q ss_pred             CeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccceEEEE
Q 046132          304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVERLLEIK  355 (361)
Q Consensus       304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ll~I~  355 (361)
                      .||.||++.+.|.++.-|||||+|++|+.+++. ....|||||++|..+++.+
T Consensus         8 dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~dvIkTY   60 (62)
T KOG4172|consen    8 DECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIKDVIKTY   60 (62)
T ss_pred             cceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHHHHHHhh
Confidence            689999999999999999999999999999765 5678999999998877643

>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.97  E-value=2.4e-11  Score=116.68  Aligned_cols=90  Identities=34%  Similarity=0.707  Sum_probs=67.3

Q ss_pred             ccCceeeeeeeeeeeecCeeee-------e----hhhhcCCCCCCCCCCCCCCCCeeeecccCCCCeEEeCCCCcccCHH
Q 046132          261 EKGEYQVRVVKQILWVNGMRYE-------L----QEIYGIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSG  329 (361)
Q Consensus       261 ~~~~~~vrvlkQ~l~v~g~~ye-------L----qeiygi~~s~~~~~~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~  329 (361)
                      ..+...|+.||.++..++..|.       +    .++|. ++..+..........+|.|||+.++|.+||+|||+..|..
T Consensus       248 d~Eg~~v~qLke~l~~d~vsy~gCcek~el~d~vtrl~k-~~~g~~~~~s~~~~~LC~ICmDaP~DCvfLeCGHmVtCt~  326 (350)
T KOG4275|consen  248 DEEGLTVRQLKEILDDDFVSYKGCCEKYELDDRVTRLYK-GNDGEQHSRSLATRRLCAICMDAPRDCVFLECGHMVTCTK  326 (350)
T ss_pred             ccccchHHHhhhhhhccCCcccchhHHHHHHHHHHHHHh-cccccccccchhHHHHHHHHhcCCcceEEeecCcEEeehh
Confidence            4466788999999988888872       1    11221 1111111112233689999999999999999999999999


Q ss_pred             HHHHHhccCCCCccccccccceEEEE
Q 046132          330 CAKVLRFQTNRCPICRQPVERLLEIK  355 (361)
Q Consensus       330 Ca~~l~~qs~~CPICR~~I~~ll~I~  355 (361)
                      |.+.|.    .|||||+-|.++++|+
T Consensus       327 CGkrm~----eCPICRqyi~rvvrif  348 (350)
T KOG4275|consen  327 CGKRMN----ECPICRQYIVRVVRIF  348 (350)
T ss_pred             hccccc----cCchHHHHHHHHHhhh
Confidence            999885    8999999999988886

>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.85  E-value=3e-09  Score=99.67  Aligned_cols=59  Identities=25%  Similarity=0.597  Sum_probs=49.9

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC---CCCcccccccc--ceEEEEcCCC
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVE--RLLEIKVNGP  359 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~--~ll~I~v~~~  359 (361)
                      +....+|-|||+..+|+|+..|||+ ||+.|+-+|....   ..||+|++.|.  .++.|+-.++
T Consensus        44 ~~~~FdCNICLd~akdPVvTlCGHL-FCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYGrG~  107 (230)
T KOG0823|consen   44 DGGFFDCNICLDLAKDPVVTLCGHL-FCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYGRGS  107 (230)
T ss_pred             CCCceeeeeeccccCCCEEeecccc-eehHHHHHHHhhcCCCeeCCccccccccceEEeeeccCC
Confidence            4456799999999999999999999 9999999997643   56999999885  5788877654

>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional

Probab=98.82  E-value=4.4e-09  Score=96.68  Aligned_cols=57  Identities=32%  Similarity=0.761  Sum_probs=46.8

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc----------------CCCCccccccccc--eEEEEcCC
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ----------------TNRCPICRQPVER--LLEIKVNG  358 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q----------------s~~CPICR~~I~~--ll~I~v~~  358 (361)
                      ++..+|.||++..++.++++|||. ||+.|+..|...                ..+||+||..|..  ++.|+..+
T Consensus        16 ~~~~~CpICld~~~dPVvT~CGH~-FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~LvPiygrg   90 (193)
T PLN03208         16 GGDFDCNICLDQVRDPVVTLCGHL-FCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATLVPIYGRG   90 (193)
T ss_pred             CCccCCccCCCcCCCcEEcCCCch-hHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcEEEeeccC
Confidence            345789999999999999999999 999999998642                2479999999964  66665443

>PHA02929 N1R/p28-like protein; Provisional

Probab=98.81  E-value=3.4e-09  Score=100.62  Aligned_cols=54  Identities=30%  Similarity=0.827  Sum_probs=45.6

Q ss_pred             CCCeeeecccCCCC--------eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          302 PGKECVICLSEPRD--------TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       302 ~~~eCvICl~~~~d--------~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      .+.+|.||++...+        .++.+|+|. ||..|+..|.....+||+||..+..+++-++
T Consensus       173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~-FC~~CI~~Wl~~~~tCPlCR~~~~~v~~~r~  234 (238)
T PHA02929        173 KDKECAICMEKVYDKEIKNMYFGILSNCNHV-FCIECIDIWKKEKNTCPVCRTPFISVIKSRF  234 (238)
T ss_pred             CCCCCccCCcccccCccccccceecCCCCCc-ccHHHHHHHHhcCCCCCCCCCEeeEEeeeee
Confidence            45789999997544        356789999 9999999999888999999999998876653

>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]

Probab=98.79  E-value=3.1e-09  Score=102.27  Aligned_cols=51  Identities=24%  Similarity=0.737  Sum_probs=46.2

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL  352 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll  352 (361)
                      +....|.+||+...+...+||||. ||++|+..|...+..||+||..+...-
T Consensus       237 ~a~~kC~LCLe~~~~pSaTpCGHi-FCWsCI~~w~~ek~eCPlCR~~~~psk  287 (293)
T KOG0317|consen  237 EATRKCSLCLENRSNPSATPCGHI-FCWSCILEWCSEKAECPLCREKFQPSK  287 (293)
T ss_pred             CCCCceEEEecCCCCCCcCcCcch-HHHHHHHHHHccccCCCcccccCCCcc
Confidence            445789999999999999999999 999999999998899999999986543

>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A

Probab=98.74  E-value=3.5e-09  Score=74.69  Aligned_cols=40  Identities=43%  Similarity=0.933  Sum_probs=35.2

Q ss_pred             eeeecccCC---CCeEEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132          305 ECVICLSEP---RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICR  345 (361)
Q Consensus       305 eCvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR  345 (361)
                      +|.||++..   ...+.++|+|. ||.+|+..|...+.+||+||
T Consensus         2 ~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~~~~~~~~CP~CR   44 (44)
T PF13639_consen    2 ECPICLEEFEDGEKVVKLPCGHV-FHRSCIKEWLKRNNSCPVCR   44 (44)
T ss_dssp             CETTTTCBHHTTSCEEEETTSEE-EEHHHHHHHHHHSSB-TTTH
T ss_pred             CCcCCChhhcCCCeEEEccCCCe-eCHHHHHHHHHhCCcCCccC
Confidence            699999865   46778999999 99999999998889999998

...

>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.70  E-value=4.9e-09  Score=103.59  Aligned_cols=53  Identities=36%  Similarity=0.894  Sum_probs=46.7

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      ......|+||++++.+++++||||+|.|..|.+.+.    .||+||+.|..+++++.
T Consensus       302 ~~~p~lcVVcl~e~~~~~fvpcGh~ccct~cs~~l~----~CPvCR~rI~~~~k~y~  354 (355)
T KOG1571|consen  302 LPQPDLCVVCLDEPKSAVFVPCGHVCCCTLCSKHLP----QCPVCRQRIRLVRKRYR  354 (355)
T ss_pred             cCCCCceEEecCCccceeeecCCcEEEchHHHhhCC----CCchhHHHHHHHHHHhc
Confidence            344578999999999999999999999999999885    69999999998877653

>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A

Probab=98.68  E-value=1e-08  Score=70.68  Aligned_cols=38  Identities=42%  Similarity=1.045  Sum_probs=33.5

Q ss_pred             eeecccCCCCe-EEeCCCCcccCHHHHHHHhccCCCCccc
Q 046132          306 CVICLSEPRDT-TVLPCRHMCMCSGCAKVLRFQTNRCPIC  344 (361)
Q Consensus       306 CvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~qs~~CPIC  344 (361)
                      |.||++..+++ ++++|||+ ||.+|+.+|.....+||+|
T Consensus         1 C~iC~~~~~~~~~~~~CGH~-fC~~C~~~~~~~~~~CP~C   39 (39)
T PF13923_consen    1 CPICLDELRDPVVVTPCGHS-FCKECIEKYLEKNPKCPVC   39 (39)
T ss_dssp             ETTTTSB-SSEEEECTTSEE-EEHHHHHHHHHCTSB-TTT
T ss_pred             CCCCCCcccCcCEECCCCCc-hhHHHHHHHHHCcCCCcCC
Confidence            89999999999 68999999 9999999988888899998

>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A

Probab=98.49  E-value=9.7e-08  Score=67.36  Aligned_cols=38  Identities=39%  Similarity=0.917  Sum_probs=30.3

Q ss_pred             eeecccCCCCeEEeCCCCcccCHHHHHHHhccC----CCCccc
Q 046132          306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT----NRCPIC  344 (361)
Q Consensus       306 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs----~~CPIC  344 (361)
                      |.||++-.++++.|+|||. ||..|+.+|+...    ..||+|
T Consensus         1 CpiC~~~~~~Pv~l~CGH~-FC~~Cl~~~~~~~~~~~~~CP~C   42 (42)
T PF15227_consen    1 CPICLDLFKDPVSLPCGHS-FCRSCLERLWKEPSGSGFSCPEC   42 (42)
T ss_dssp             ETTTTSB-SSEEE-SSSSE-EEHHHHHHHHCCSSSST---SSS
T ss_pred             CCccchhhCCccccCCcCH-HHHHHHHHHHHccCCcCCCCcCC
Confidence            8899999999999999999 9999999987654    359988

>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.48  E-value=7.6e-08  Score=87.18  Aligned_cols=53  Identities=32%  Similarity=0.727  Sum_probs=43.4

Q ss_pred             CCeeeecccCCCCeE--EeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEEc
Q 046132          303 GKECVICLSEPRDTT--VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIKV  356 (361)
Q Consensus       303 ~~eCvICl~~~~d~v--lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~v  356 (361)
                      -..|.|||+....-+  -.-|||+ ||..|++.++....+||+||..|..  +.+|++
T Consensus       131 ~~~CPiCl~~~sek~~vsTkCGHv-FC~~Cik~alk~~~~CP~C~kkIt~k~~~rI~L  187 (187)
T KOG0320|consen  131 TYKCPICLDSVSEKVPVSTKCGHV-FCSQCIKDALKNTNKCPTCRKKITHKQFHRIYL  187 (187)
T ss_pred             ccCCCceecchhhccccccccchh-HHHHHHHHHHHhCCCCCCcccccchhhheeccC
Confidence            367999999776655  3679999 9999999999999999999987765  455553

>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)

Probab=98.47  E-value=1.3e-07  Score=64.72  Aligned_cols=43  Identities=47%  Similarity=1.105  Sum_probs=35.7

Q ss_pred             eeeecccCCCCeEEe-CCCCcccCHHHHHHHhcc-CCCCccccccc
Q 046132          305 ECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQ-TNRCPICRQPV  348 (361)
Q Consensus       305 eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~q-s~~CPICR~~I  348 (361)
                      +|.||++...+.+.+ +|+|. ||..|+..|..+ ..+||+||..+
T Consensus         1 ~C~iC~~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~Cp~C~~~~   45 (45)
T cd00162           1 ECPICLEEFREPVVLLPCGHV-FCRSCIDKWLKSGKNTCPLCRTPI   45 (45)
T ss_pred             CCCcCchhhhCceEecCCCCh-hcHHHHHHHHHhCcCCCCCCCCcC
Confidence            499999998555544 59999 999999998876 67899999764

>PHA02926 zinc finger-like protein; Provisional

Probab=98.42  E-value=1.1e-07  Score=89.07  Aligned_cols=50  Identities=28%  Similarity=0.666  Sum_probs=39.4

Q ss_pred             CCCeeeecccCC---------CCeEEeCCCCcccCHHHHHHHhccC------CCCccccccccceE
Q 046132          302 PGKECVICLSEP---------RDTTVLPCRHMCMCSGCAKVLRFQT------NRCPICRQPVERLL  352 (361)
Q Consensus       302 ~~~eCvICl~~~---------~d~vlLPCgH~cfC~~Ca~~l~~qs------~~CPICR~~I~~ll  352 (361)
                      .+.+|.|||+..         +-.++.+|+|. ||..|+..|+...      ..||+||..+..+.
T Consensus       169 kE~eCgICmE~I~eK~~~~eRrFGIL~~CnHs-FCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~  233 (242)
T PHA02926        169 KEKECGICYEVVYSKRLENDRYFGLLDSCNHI-FCITCINIWHRTRRETGASDNCPICRTRFRNIT  233 (242)
T ss_pred             CCCCCccCccccccccccccccccccCCCCch-HHHHHHHHHHHhccccCcCCcCCCCcceeeeec
Confidence            347899999853         22567799999 9999999999742      45999999887553

>PF14634 zf-RING_5: zinc-RING finger domain

Probab=98.36  E-value=2.7e-07  Score=65.36  Aligned_cols=41  Identities=37%  Similarity=0.971  Sum_probs=35.0

Q ss_pred             eeeecccCC---CCeEEeCCCCcccCHHHHHHHhccCCCCccccc
Q 046132          305 ECVICLSEP---RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ  346 (361)
Q Consensus       305 eCvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~  346 (361)
                      +|.||++..   +...+++|||. ||..|+..+......||+||+
T Consensus         1 ~C~~C~~~~~~~~~~~l~~CgH~-~C~~C~~~~~~~~~~CP~C~k   44 (44)
T PF14634_consen    1 HCNICFEKYSEERRPRLTSCGHI-FCEKCLKKLKGKSVKCPICRK   44 (44)
T ss_pred             CCcCcCccccCCCCeEEcccCCH-HHHHHHHhhcCCCCCCcCCCC
Confidence            488999877   45789999999 999999998755678999985

>smart00184 RING Ring finger

Probab=98.33  E-value=4.3e-07  Score=59.93  Aligned_cols=38  Identities=47%  Similarity=1.100  Sum_probs=34.2

Q ss_pred             eeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccc
Q 046132          306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPIC  344 (361)
Q Consensus       306 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPIC  344 (361)
                      |.||++..++.++++|+|. ||..|++.|.. ...+||+|
T Consensus         1 C~iC~~~~~~~~~~~C~H~-~c~~C~~~~~~~~~~~CP~C   39 (39)
T smart00184        1 CPICLEELKDPVVLPCGHT-FCRSCIRKWLKSGNNTCPIC   39 (39)
T ss_pred             CCcCccCCCCcEEecCCCh-HHHHHHHHHHHhCcCCCCCC
Confidence            7899999999999999999 99999999876 45679987

E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)

>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.33  E-value=1.6e-07  Score=87.76  Aligned_cols=46  Identities=39%  Similarity=1.002  Sum_probs=42.0

Q ss_pred             eeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEE
Q 046132          306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIK  355 (361)
Q Consensus       306 CvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~  355 (361)
                      |.+|.++...++++||+|+|+|..|...+    ..||+|+..+.+.++++
T Consensus       161 Cr~C~~~~~~VlllPCrHl~lC~~C~~~~----~~CPiC~~~~~s~~~v~  206 (207)
T KOG1100|consen  161 CRKCGEREATVLLLPCRHLCLCGICDESL----RICPICRSPKTSSVEVN  206 (207)
T ss_pred             ceecCcCCceEEeecccceEecccccccC----ccCCCCcChhhceeecc
Confidence            99999999999999999999999999864    37999999999888765

>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.31  E-value=3.5e-07  Score=63.19  Aligned_cols=38  Identities=37%  Similarity=0.970  Sum_probs=34.4

Q ss_pred             eeecccCCCCeE-EeCCCCcccCHHHHHHHhc--cCCCCccc
Q 046132          306 CVICLSEPRDTT-VLPCRHMCMCSGCAKVLRF--QTNRCPIC  344 (361)
Q Consensus       306 CvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--qs~~CPIC  344 (361)
                      |.||++...+.+ +++|||. ||..|+.+|+.  ....||+|
T Consensus         1 C~iC~~~~~~~~~~~~C~H~-fC~~C~~~~~~~~~~~~CP~C   41 (41)
T PF00097_consen    1 CPICLEPFEDPVILLPCGHS-FCRDCLRKWLENSGSVKCPLC   41 (41)
T ss_dssp             ETTTSSBCSSEEEETTTSEE-EEHHHHHHHHHHTSSSBTTTT
T ss_pred             CCcCCccccCCCEEecCCCc-chHHHHHHHHHhcCCccCCcC
Confidence            889999999998 9999999 99999999877  45679998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....

>TIGR00599 rad18 DNA repair protein rad18

Probab=98.31  E-value=3.4e-07  Score=92.84  Aligned_cols=52  Identities=25%  Similarity=0.533  Sum_probs=45.6

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +..+....|.||++...+.++++|+|. ||..|+..|......||+||..+..
T Consensus        21 ~~Le~~l~C~IC~d~~~~PvitpCgH~-FCs~CI~~~l~~~~~CP~Cr~~~~~   72 (397)
T TIGR00599        21 YPLDTSLRCHICKDFFDVPVLTSCSHT-FCSLCIRRCLSNQPKCPLCRAEDQE   72 (397)
T ss_pred             cccccccCCCcCchhhhCccCCCCCCc-hhHHHHHHHHhCCCCCCCCCCcccc
Confidence            344566899999999999999999999 9999999988777789999998864

This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.29  E-value=5.1e-07  Score=87.77  Aligned_cols=49  Identities=39%  Similarity=0.895  Sum_probs=41.5

Q ss_pred             CCCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhc-cCCCCcccccccc
Q 046132          300 NDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVE  349 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~  349 (361)
                      .+.+-+|+|||+....   .++|||.|. |...|+++|.. -+.+||+||+++.
T Consensus       320 a~~GveCaICms~fiK~d~~~vlPC~H~-FH~~Cv~kW~~~y~~~CPvCrt~iP  372 (374)
T COG5540         320 ADKGVECAICMSNFIKNDRLRVLPCDHR-FHVGCVDKWLLGYSNKCPVCRTAIP  372 (374)
T ss_pred             cCCCceEEEEhhhhcccceEEEeccCce-echhHHHHHHhhhcccCCccCCCCC
Confidence            4567899999996542   678999999 99999999987 5689999999874

>smart00504 Ubox Modified RING finger domain

Probab=98.29  E-value=6.6e-07  Score=66.90  Aligned_cols=46  Identities=20%  Similarity=0.306  Sum_probs=41.9

Q ss_pred             CeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ..|.||++..++.++++|||. ||.+|+..|.....+||+|+..+..
T Consensus         2 ~~Cpi~~~~~~~Pv~~~~G~v-~~~~~i~~~~~~~~~cP~~~~~~~~   47 (63)
T smart00504        2 FLCPISLEVMKDPVILPSGQT-YERRAIEKWLLSHGTDPVTGQPLTH   47 (63)
T ss_pred             cCCcCCCCcCCCCEECCCCCE-EeHHHHHHHHHHCCCCCCCcCCCCh
Confidence            469999999999999999999 9999999988777889999998843

Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.

>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.21  E-value=8.6e-07  Score=88.23  Aligned_cols=48  Identities=29%  Similarity=0.729  Sum_probs=40.8

Q ss_pred             CeeeecccCCCC---eEEeCCCCcccCHHHHHHHhccCCC-CccccccccceE
Q 046132          304 KECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNR-CPICRQPVERLL  352 (361)
Q Consensus       304 ~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~qs~~-CPICR~~I~~ll  352 (361)
                      ..|+||++..+.   ..+|||+|. |+..|++.|..+..+ ||+|++.+..-.
T Consensus       230 ~~CaIClEdY~~GdklRiLPC~H~-FH~~CIDpWL~~~r~~CPvCK~di~~~~  281 (348)
T KOG4628|consen  230 DTCAICLEDYEKGDKLRILPCSHK-FHVNCIDPWLTQTRTFCPVCKRDIRTDS  281 (348)
T ss_pred             ceEEEeecccccCCeeeEecCCCc-hhhccchhhHhhcCccCCCCCCcCCCCC
Confidence            599999997765   468999999 999999999988744 999999886543

>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]

Probab=98.16  E-value=1e-06  Score=87.65  Aligned_cols=48  Identities=35%  Similarity=0.838  Sum_probs=40.6

Q ss_pred             CCCCCeeeecccCC-------------CCeEEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132          300 NDPGKECVICLSEP-------------RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV  348 (361)
Q Consensus       300 ~~~~~eCvICl~~~-------------~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I  348 (361)
                      ..++..|.|||++.             +.+--|||||. +...|++.|...+.+|||||.++
T Consensus       284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCGHi-lHl~CLknW~ERqQTCPICr~p~  344 (491)
T COG5243         284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCGHI-LHLHCLKNWLERQQTCPICRRPV  344 (491)
T ss_pred             cCCCCeEEEecccccCCCCccCcccccCCcccccccce-eeHHHHHHHHHhccCCCcccCcc
Confidence            34568999999972             22357899998 99999999999999999999995

>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=98.15  E-value=1.7e-06  Score=67.92  Aligned_cols=40  Identities=33%  Similarity=0.695  Sum_probs=33.1

Q ss_pred             eeeecccCC-------------CCeEEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132          305 ECVICLSEP-------------RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICR  345 (361)
Q Consensus       305 eCvICl~~~-------------~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR  345 (361)
                      .|.||++..             ...++.+|||. |+..|+..|.....+||+||
T Consensus        21 ~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR   73 (73)
T PF12678_consen   21 NCAICREPLEDPCPECQAPQDECPIVWGPCGHI-FHFHCISQWLKQNNTCPLCR   73 (73)
T ss_dssp             BETTTTSBTTSTTCCHHHCTTTS-EEEETTSEE-EEHHHHHHHHTTSSB-TTSS
T ss_pred             cccccChhhhChhhhhcCCccccceEecccCCC-EEHHHHHHHHhcCCcCCCCC
Confidence            499999866             23456789999 99999999999889999998

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....

>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.13  E-value=1.1e-06  Score=83.90  Aligned_cols=49  Identities=31%  Similarity=0.776  Sum_probs=42.2

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHH-HhccCC-CCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKV-LRFQTN-RCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~-l~~qs~-~CPICR~~I~~  350 (361)
                      ..+..|.||++...+...++|||+ ||..|+-. |..++. .||+||+.+.-
T Consensus       213 ~~d~kC~lC~e~~~~ps~t~CgHl-FC~~Cl~~~~t~~k~~~CplCRak~~p  263 (271)
T COG5574         213 LADYKCFLCLEEPEVPSCTPCGHL-FCLSCLLISWTKKKYEFCPLCRAKVYP  263 (271)
T ss_pred             ccccceeeeecccCCcccccccch-hhHHHHHHHHHhhccccCchhhhhccc
Confidence            346789999999999999999999 99999998 776654 49999997743

>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]

Probab=98.12  E-value=8.3e-07  Score=88.94  Aligned_cols=53  Identities=25%  Similarity=0.696  Sum_probs=46.5

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc--CCCCccccccccceEEEEc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ--TNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q--s~~CPICR~~I~~ll~I~v  356 (361)
                      -.+|.||-++.+|+.+-||||+ +|..|+..|...  ...||.||..|.+.-.|.|
T Consensus       369 FeLCKICaendKdvkIEPCGHL-lCt~CLa~WQ~sd~gq~CPFCRcEIKGte~vii  423 (563)
T KOG1785|consen  369 FELCKICAENDKDVKIEPCGHL-LCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVII  423 (563)
T ss_pred             HHHHHHhhccCCCcccccccch-HHHHHHHhhcccCCCCCCCceeeEeccccceee
Confidence            3589999999999999999999 999999999854  4789999999988766654

>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=98.10  E-value=1.7e-06  Score=89.02  Aligned_cols=55  Identities=29%  Similarity=0.683  Sum_probs=46.2

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-----CCCccccccccc--eEEEEcCC
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-----NRCPICRQPVER--LLEIKVNG  358 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-----~~CPICR~~I~~--ll~I~v~~  358 (361)
                      +..|.|||+.+..++++.|||. ||..|+-..+..+     ..||+||..|..  +..|+..+
T Consensus       186 ~~~CPICL~~~~~p~~t~CGHi-FC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~e~  247 (513)
T KOG2164|consen  186 DMQCPICLEPPSVPVRTNCGHI-FCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFIED  247 (513)
T ss_pred             CCcCCcccCCCCcccccccCce-eeHHHHHHHHhhhcccCCccCCchhhhccccceeeeeecc
Confidence            5789999999999999999999 9999999855443     579999999977  76666543

>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A

Probab=97.96  E-value=3.6e-06  Score=59.85  Aligned_cols=31  Identities=35%  Similarity=0.847  Sum_probs=20.8

Q ss_pred             eeecccCCCC----eEEeCCCCcccCHHHHHHHhccC
Q 046132          306 CVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQT  338 (361)
Q Consensus       306 CvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~qs  338 (361)
                      |.||.+ ..+    +++|+|||. ||.+|++.|...+
T Consensus         1 CpIc~e-~~~~~n~P~~L~CGH~-~c~~cl~~l~~~~   35 (43)
T PF13445_consen    1 CPICKE-FSTEENPPMVLPCGHV-FCKDCLQKLSKKS   35 (43)
T ss_dssp             -TTT-----TTSS-EEE-SSS-E-EEHHHHHHHHHH-
T ss_pred             CCcccc-ccCCCCCCEEEeCccH-HHHHHHHHHHhcC
Confidence            889998 667    899999999 9999999987643

>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.95  E-value=2.5e-06  Score=78.44  Aligned_cols=46  Identities=33%  Similarity=0.730  Sum_probs=39.9

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQ  346 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~  346 (361)
                      ..+...|.||++..+++++++|+|. ||..|+..++.....||.||.
T Consensus        10 ~~~~~~C~iC~~~~~~p~~l~C~H~-~c~~C~~~~~~~~~~Cp~cr~   55 (386)
T KOG2177|consen   10 LQEELTCPICLEYFREPVLLPCGHN-FCRACLTRSWEGPLSCPVCRP   55 (386)
T ss_pred             ccccccChhhHHHhhcCccccccch-HhHHHHHHhcCCCcCCcccCC
Confidence            3456789999999999999999999 999999997754468999994

>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.93  E-value=3.7e-06  Score=88.60  Aligned_cols=48  Identities=29%  Similarity=0.693  Sum_probs=42.7

Q ss_pred             CCCCeeeecccCCCC-----eEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          301 DPGKECVICLSEPRD-----TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~d-----~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      ..+..|.||++....     +..|+|+|. ||..|++.|..+..+||+||..+.
T Consensus       289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~Hi-fh~~CL~~W~er~qtCP~CR~~~~  341 (543)
T KOG0802|consen  289 LSDELCIICLEELHSGHNITPKRLPCGHI-FHDSCLRSWFERQQTCPTCRTVLY  341 (543)
T ss_pred             hcCCeeeeechhhccccccccceeecccc-hHHHHHHHHHHHhCcCCcchhhhh
Confidence            446789999998877     789999999 999999999999999999999443

>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]

Probab=97.78  E-value=5.6e-06  Score=81.69  Aligned_cols=49  Identities=29%  Similarity=0.600  Sum_probs=44.2

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ++-..|-||++-++.+++.||+|. ||.-|++........||.|+..+..
T Consensus        21 D~lLRC~IC~eyf~ip~itpCsHt-fCSlCIR~~L~~~p~CP~C~~~~~E   69 (442)
T KOG0287|consen   21 DDLLRCGICFEYFNIPMITPCSHT-FCSLCIRKFLSYKPQCPTCCVTVTE   69 (442)
T ss_pred             HHHHHHhHHHHHhcCceeccccch-HHHHHHHHHhccCCCCCceecccch
Confidence            445689999999999999999999 9999999988888999999998864

>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]

Probab=97.76  E-value=8.3e-06  Score=79.09  Aligned_cols=49  Identities=27%  Similarity=0.484  Sum_probs=43.9

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +....|-||-+..+..++.+|||. ||+-|++........||+||.....
T Consensus        23 Ds~lrC~IC~~~i~ip~~TtCgHt-FCslCIR~hL~~qp~CP~Cr~~~~e   71 (391)
T COG5432          23 DSMLRCRICDCRISIPCETTCGHT-FCSLCIRRHLGTQPFCPVCREDPCE   71 (391)
T ss_pred             hhHHHhhhhhheeecceecccccc-hhHHHHHHHhcCCCCCccccccHHh
Confidence            445789999999999999999999 9999999988788899999998754

>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]

Probab=97.73  E-value=6.4e-06  Score=88.24  Aligned_cols=54  Identities=20%  Similarity=0.623  Sum_probs=44.7

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHH-hccCCCCccccccccc--eEEEEc
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVL-RFQTNRCPICRQPVER--LLEIKV  356 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l-~~qs~~CPICR~~I~~--ll~I~v  356 (361)
                      .-..|.+|.++.+|+++.-|+|+ ||..|++.. .....+||.|-+.|..  +.+|++
T Consensus       642 ~~LkCs~Cn~R~Kd~vI~kC~H~-FC~~Cvq~r~etRqRKCP~Cn~aFganDv~~I~l  698 (698)
T KOG0978|consen  642 ELLKCSVCNTRWKDAVITKCGHV-FCEECVQTRYETRQRKCPKCNAAFGANDVHRIHL  698 (698)
T ss_pred             hceeCCCccCchhhHHHHhcchH-HHHHHHHHHHHHhcCCCCCCCCCCCcccccccCC
Confidence            34689999999999999999999 999999983 3446799999999964  455553

>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.70  E-value=1.4e-05  Score=77.81  Aligned_cols=49  Identities=31%  Similarity=0.641  Sum_probs=41.9

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh-ccCCCCccccccccce
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR-FQTNRCPICRQPVERL  351 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~-~qs~~CPICR~~I~~l  351 (361)
                      ...+|.||+....-.+.|+|+|. ||+.|++-.. ..+..|++||.+|.+.
T Consensus         6 ~~~eC~IC~nt~n~Pv~l~C~Hk-FCyiCiKGsy~ndk~~CavCR~pids~   55 (324)
T KOG0824|consen    6 KKKECLICYNTGNCPVNLYCFHK-FCYICIKGSYKNDKKTCAVCRFPIDST   55 (324)
T ss_pred             cCCcceeeeccCCcCccccccch-hhhhhhcchhhcCCCCCceecCCCCcc
Confidence            35789999999999999999999 9999999743 3456699999999874

>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis

Probab=97.69  E-value=2.5e-05  Score=61.08  Aligned_cols=47  Identities=26%  Similarity=0.277  Sum_probs=38.6

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      ...|.||.+-.+|+++++|||. |+..|+..|..+ ...||+|+..+..
T Consensus         4 ~f~CpIt~~lM~dPVi~~~G~t-yer~~I~~~l~~~~~~~P~t~~~l~~   51 (73)
T PF04564_consen    4 EFLCPITGELMRDPVILPSGHT-YERSAIERWLEQNGGTDPFTRQPLSE   51 (73)
T ss_dssp             GGB-TTTSSB-SSEEEETTSEE-EEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred             ccCCcCcCcHhhCceeCCcCCE-EcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence            4689999999999999999999 999999999888 6889999998865

Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....

>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=97.67  E-value=4e-05  Score=75.96  Aligned_cols=53  Identities=30%  Similarity=0.826  Sum_probs=45.1

Q ss_pred             CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh--ccCCCCccccccccceE
Q 046132          299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR--FQTNRCPICRQPVERLL  352 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~--~qs~~CPICR~~I~~ll  352 (361)
                      .+++...|+||-....-..++||+|. +|..|+-+++  +.++.|++||+.-+.++
T Consensus        57 tDEen~~C~ICA~~~TYs~~~PC~H~-~CH~Ca~RlRALY~~K~C~~CrTE~e~V~  111 (493)
T COG5236          57 TDEENMNCQICAGSTTYSARYPCGHQ-ICHACAVRLRALYMQKGCPLCRTETEAVV  111 (493)
T ss_pred             cccccceeEEecCCceEEEeccCCch-HHHHHHHHHHHHHhccCCCccccccceEE
Confidence            34556789999999999999999999 9999998865  45688999999887765

>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.53  E-value=4.2e-05  Score=76.47  Aligned_cols=51  Identities=31%  Similarity=0.750  Sum_probs=41.4

Q ss_pred             CCCCeeeecccCCCCeE-----E---eCCCCcccCHHHHHHHh--cc-----CCCCccccccccceE
Q 046132          301 DPGKECVICLSEPRDTT-----V---LPCRHMCMCSGCAKVLR--FQ-----TNRCPICRQPVERLL  352 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~v-----l---LPCgH~cfC~~Ca~~l~--~q-----s~~CPICR~~I~~ll  352 (361)
                      ..+++|.|||+...+..     +   .+|.|. ||..|+..|+  .+     +..||+||.....+.
T Consensus       159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~-~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~  224 (344)
T KOG1039|consen  159 SSEKECGICMETINEKAASERRFGILPNCNHS-FCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVN  224 (344)
T ss_pred             cccccceehhhhccccchhhhhcccCCCcchh-hhhcHhHhhhhhhccccccccCCCcccCcccccc
Confidence            34678999999766655     3   669999 9999999999  45     478999999887653

>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1

Probab=97.47  E-value=8.5e-05  Score=73.13  Aligned_cols=46  Identities=26%  Similarity=0.729  Sum_probs=34.3

Q ss_pred             CeeeecccC---CCCe--EEeCCCCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132          304 KECVICLSE---PRDT--TVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVER  350 (361)
Q Consensus       304 ~eCvICl~~---~~d~--vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~  350 (361)
                      ..|.||.+.   ..+.  .+.+|||. ||.+|+..++. ....||+|+..+..
T Consensus         4 ~~CP~Ck~~~y~np~~kl~i~~CGH~-~C~sCv~~l~~~~~~~CP~C~~~lrk   55 (309)
T TIGR00570         4 QGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGSGSCPECDTPLRK   55 (309)
T ss_pred             CCCCcCCCCCccCcccccccCCCCCc-ccHHHHHHHhcCCCCCCCCCCCccch
Confidence            579999983   2222  22379999 99999999654 34679999998764

All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).

>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]

Probab=97.45  E-value=0.00043  Score=74.75  Aligned_cols=32  Identities=19%  Similarity=0.374  Sum_probs=16.3

Q ss_pred             CCCCCCccccceeeeEeeceEecC-cceEEEEcC
Q 046132          117 MAPPPPYVEHQKAVTIRNDVNLKK-ESLKLEADE  149 (361)
Q Consensus       117 ~~~~~p~ve~q~t~tIrn~VNlrK-~SLRl~~~~  149 (361)
                      |+|..|+ -..+-|.-+-+|-+|| +=.++++.+
T Consensus       606 maPvlP~-gLkpKK~~k~e~~Mrr~nW~kI~p~d  638 (1102)
T KOG1924|consen  606 MAPVLPF-GLKPKKVYKPEVPMRRFNWSKIVPRD  638 (1102)
T ss_pred             ccccCCC-CCCccccCCCCCccccCCccccCccc
Confidence            4555552 2344455666676766 233455433

>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.26  E-value=1.9e-05  Score=78.41  Aligned_cols=55  Identities=31%  Similarity=0.622  Sum_probs=45.2

Q ss_pred             CCCeeeecccCCCCeEEeC-CCCcccCHHHHHH-HhccCCCCccccccccceEEEEcC
Q 046132          302 PGKECVICLSEPRDTTVLP-CRHMCMCSGCAKV-LRFQTNRCPICRQPVERLLEIKVN  357 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~-l~~qs~~CPICR~~I~~ll~I~v~  357 (361)
                      ....|.||++-.+.++..+ |.|. ||+.|+.. ++...+.||.||+...+...++..
T Consensus        42 ~~v~c~icl~llk~tmttkeClhr-fc~~ci~~a~r~gn~ecptcRk~l~SkrsLr~D   98 (381)
T KOG0311|consen   42 IQVICPICLSLLKKTMTTKECLHR-FCFDCIWKALRSGNNECPTCRKKLVSKRSLRID   98 (381)
T ss_pred             hhhccHHHHHHHHhhcccHHHHHH-HHHHHHHHHHHhcCCCCchHHhhccccccCCCC
Confidence            3568999999888877555 9999 99999988 666668899999999887666543

>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.23  E-value=0.00017  Score=71.69  Aligned_cols=49  Identities=29%  Similarity=0.710  Sum_probs=44.7

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      .++..|.||+..+.+.++.||+|. -|++|+..-.+.++.|=.|.+.+..
T Consensus       420 sEd~lCpICyA~pi~Avf~PC~H~-SC~~CI~qHlmN~k~CFfCktTv~~  468 (489)
T KOG4692|consen  420 SEDNLCPICYAGPINAVFAPCSHR-SCYGCITQHLMNCKRCFFCKTTVID  468 (489)
T ss_pred             cccccCcceecccchhhccCCCCc-hHHHHHHHHHhcCCeeeEecceeee
Confidence            456789999999999999999999 8999999988888999999998875

>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=97.19  E-value=0.00017  Score=74.30  Aligned_cols=49  Identities=29%  Similarity=0.716  Sum_probs=38.6

Q ss_pred             CCCCeeeecccC-----------------CCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          301 DPGKECVICLSE-----------------PRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~-----------------~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      +....|+|||+.                 .++-++.||.|. |...|+..|+.. +-.||+||.++..
T Consensus       569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~Hi-fH~~CL~~WMd~ykl~CPvCR~pLPp  635 (636)
T KOG0828|consen  569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHI-FHRQCLLQWMDTYKLICPVCRCPLPP  635 (636)
T ss_pred             hccccceEeccccceeeccCcchhhhhhhhccccccchHHH-HHHHHHHHHHhhhcccCCccCCCCCC
Confidence            345689999972                 234567799999 999999999873 4589999998754

>PF14447 Prok-RING_4: Prokaryotic RING finger family 4

Probab=96.99  E-value=0.00031  Score=52.44  Aligned_cols=45  Identities=40%  Similarity=0.900  Sum_probs=38.6

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      .-.|+.|.......+++||+|+ .|..|....++  +-||+|-.+|+.
T Consensus         7 ~~~~~~~~~~~~~~~~~pCgH~-I~~~~f~~~rY--ngCPfC~~~~~~   51 (55)
T PF14447_consen    7 EQPCVFCGFVGTKGTVLPCGHL-ICDNCFPGERY--NGCPFCGTPFEF   51 (55)
T ss_pred             ceeEEEccccccccccccccce-eeccccChhhc--cCCCCCCCcccC
Confidence            4579999999999999999999 99999877663  589999988764

>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger

Probab=96.99  E-value=0.00068  Score=55.00  Aligned_cols=32  Identities=28%  Similarity=0.572  Sum_probs=26.6

Q ss_pred             EEeCCCCcccCHHHHHHHhcc---CCCCcccccccc
Q 046132          317 TVLPCRHMCMCSGCAKVLRFQ---TNRCPICRQPVE  349 (361)
Q Consensus       317 vlLPCgH~cfC~~Ca~~l~~q---s~~CPICR~~I~  349 (361)
                      ++--|+|. |..-|+.+|..+   +..||+||+...
T Consensus        48 v~g~C~H~-FH~hCI~kWl~~~~~~~~CPmCR~~w~   82 (85)
T PF12861_consen   48 VWGKCSHN-FHMHCILKWLSTQSSKGQCPMCRQPWK   82 (85)
T ss_pred             eeccCccH-HHHHHHHHHHccccCCCCCCCcCCeee
Confidence            45579999 999999998875   367999999764

>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.98  E-value=0.00039  Score=70.87  Aligned_cols=49  Identities=29%  Similarity=0.653  Sum_probs=44.0

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ..+.+|.||+...-.++.+||||. ||..|+.+...+...||.||..+..
T Consensus        82 ~sef~c~vc~~~l~~pv~tpcghs-~c~~Cl~r~ld~~~~cp~Cr~~l~e  130 (398)
T KOG4159|consen   82 RSEFECCVCSRALYPPVVTPCGHS-FCLECLDRSLDQETECPLCRDELVE  130 (398)
T ss_pred             cchhhhhhhHhhcCCCcccccccc-ccHHHHHHHhccCCCCccccccccc
Confidence            456899999999999999999999 9999998877788899999998875

>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins

Probab=96.41  E-value=0.0025  Score=46.43  Aligned_cols=40  Identities=30%  Similarity=0.726  Sum_probs=32.5

Q ss_pred             eeeeccc--CCCCeEEeCCC-----CcccCHHHHHHHhccC--CCCcccc
Q 046132          305 ECVICLS--EPRDTTVLPCR-----HMCMCSGCAKVLRFQT--NRCPICR  345 (361)
Q Consensus       305 eCvICl~--~~~d~vlLPCg-----H~cfC~~Ca~~l~~qs--~~CPICR  345 (361)
                      .|.||++  ...+.++.||.     |. +...|+..|...+  .+|++|.
T Consensus         1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~-vH~~Cl~~W~~~~~~~~C~iC~   49 (49)
T smart00744        1 ICRICHDEGDEGDPLVSPCRCKGSLKY-VHQECLERWINESGNKTCEICK   49 (49)
T ss_pred             CccCCCCCCCCCCeeEeccccCCchhH-HHHHHHHHHHHHcCCCcCCCCC
Confidence            3899997  56677889996     67 8999999998654  5799994

Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class

>PF04641 Rtf2: Rtf2 RING-finger

Probab=96.38  E-value=0.0075  Score=58.08  Aligned_cols=59  Identities=24%  Similarity=0.456  Sum_probs=46.3

Q ss_pred             CCCCCeeeecccCCC----CeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCCC
Q 046132          300 NDPGKECVICLSEPR----DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPE  360 (361)
Q Consensus       300 ~~~~~eCvICl~~~~----d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~~  360 (361)
                      ......|.|+..+..    -+.+.+|||+ |+..+++.+. ....||+|-.++...--|.++..+
T Consensus       110 ~~~~~~CPvt~~~~~~~~~fv~l~~cG~V-~s~~alke~k-~~~~Cp~c~~~f~~~DiI~Lnp~~  172 (260)
T PF04641_consen  110 SEGRFICPVTGKEFNGKHKFVYLRPCGCV-FSEKALKELK-KSKKCPVCGKPFTEEDIIPLNPPE  172 (260)
T ss_pred             CCceeECCCCCcccCCceeEEEEcCCCCE-eeHHHHHhhc-ccccccccCCccccCCEEEecCCc
Confidence            445678999987653    3567899999 9999999995 456799999999877666666644

>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B

Probab=96.27  E-value=0.0009  Score=51.56  Aligned_cols=43  Identities=28%  Similarity=0.803  Sum_probs=23.2

Q ss_pred             CCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132          303 GKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRFQTNRCPICRQPV  348 (361)
Q Consensus       303 ~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I  348 (361)
                      ...|.+|.+-.+.++ +.-|.|. ||+.|+..-.  ...||+|+.+.
T Consensus         7 lLrCs~C~~~l~~pv~l~~CeH~-fCs~Ci~~~~--~~~CPvC~~Pa   50 (65)
T PF14835_consen    7 LLRCSICFDILKEPVCLGGCEHI-FCSSCIRDCI--GSECPVCHTPA   50 (65)
T ss_dssp             TTS-SSS-S--SS-B---SSS---B-TTTGGGGT--TTB-SSS--B-
T ss_pred             hcCCcHHHHHhcCCceeccCccH-HHHHHhHHhc--CCCCCCcCChH
Confidence            467999999999986 5789999 9999997632  24699999876

>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]

Probab=96.21  E-value=0.0024  Score=59.38  Aligned_cols=50  Identities=24%  Similarity=0.438  Sum_probs=43.1

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEE
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLE  353 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~  353 (361)
                      -..|.||-...+..++.-|||. ||..|+..-......|-+|-....++..
T Consensus       196 PF~C~iCKkdy~spvvt~CGH~-FC~~Cai~~y~kg~~C~~Cgk~t~G~f~  245 (259)
T COG5152         196 PFLCGICKKDYESPVVTECGHS-FCSLCAIRKYQKGDECGVCGKATYGRFW  245 (259)
T ss_pred             ceeehhchhhccchhhhhcchh-HHHHHHHHHhccCCcceecchhhcccee
Confidence            3589999999999999999999 9999999866667899999887766543

>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=96.15  E-value=0.0052  Score=59.55  Aligned_cols=53  Identities=28%  Similarity=0.662  Sum_probs=41.6

Q ss_pred             CCCCCCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhc--cCCCCccccccccceE
Q 046132          299 ANDPGKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRF--QTNRCPICRQPVERLL  352 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~--qs~~CPICR~~I~~ll  352 (361)
                      ....+.+|++|-+.+..+. +.+|||. +|+.|+.+-+.  -+-+||.|-..+..+.
T Consensus       235 ~~t~~~~C~~Cg~~PtiP~~~~~C~Hi-yCY~Ci~ts~~~~asf~Cp~Cg~~~~~lq  290 (298)
T KOG2879|consen  235 TGTSDTECPVCGEPPTIPHVIGKCGHI-YCYYCIATSRLWDASFTCPLCGENVEPLQ  290 (298)
T ss_pred             cccCCceeeccCCCCCCCeeeccccce-eehhhhhhhhcchhhcccCccCCCCcchh
Confidence            3456789999999988875 5569999 99999988332  3468999998887554

>KOG0825 consensus PHD Zn-finger protein [General function prediction only]

Probab=96.11  E-value=0.0013  Score=71.16  Aligned_cols=50  Identities=20%  Similarity=0.431  Sum_probs=40.3

Q ss_pred             CeeeecccCCCCeEE---eCCCCcccCHHHHHHHhccCCCCccccccccceEEE
Q 046132          304 KECVICLSEPRDTTV---LPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI  354 (361)
Q Consensus       304 ~eCvICl~~~~d~vl---LPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I  354 (361)
                      ..|.+|+....|-++   .+|+|. ||..|+..|..-..+||+||..+..++..
T Consensus       124 ~~CP~Ci~s~~DqL~~~~k~c~H~-FC~~Ci~sWsR~aqTCPiDR~EF~~v~V~  176 (1134)
T KOG0825|consen  124 NQCPNCLKSCNDQLEESEKHTAHY-FCEECVGSWSRCAQTCPVDRGEFGEVKVL  176 (1134)
T ss_pred             hhhhHHHHHHHHHhhccccccccc-cHHHHhhhhhhhcccCchhhhhhheeeee
Confidence            467778776666443   479999 99999999998889999999998876544

>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]

Probab=96.10  E-value=0.0059  Score=62.62  Aligned_cols=46  Identities=22%  Similarity=0.502  Sum_probs=35.0

Q ss_pred             CCCCCeeeecccCCCCe----EEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132          300 NDPGKECVICLSEPRDT----TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV  348 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~----vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I  348 (361)
                      ..+--.|+|||++.-.-    +...|.|. |...|+..|+.  .+||+||--.
T Consensus       172 ~tELPTCpVCLERMD~s~~gi~t~~c~Hs-fh~~cl~~w~~--~scpvcR~~q  221 (493)
T KOG0804|consen  172 LTELPTCPVCLERMDSSTTGILTILCNHS-FHCSCLMKWWD--SSCPVCRYCQ  221 (493)
T ss_pred             cccCCCcchhHhhcCccccceeeeecccc-cchHHHhhccc--CcChhhhhhc
Confidence            34456899999864432    44679999 99999999974  5899999644

>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]

Probab=95.85  E-value=0.0044  Score=63.17  Aligned_cols=53  Identities=34%  Similarity=0.701  Sum_probs=45.6

Q ss_pred             CCCCCeeeecccCCCCeEE-eCCCCcccCHHHHHHHhccCCCCccccccccceEE
Q 046132          300 NDPGKECVICLSEPRDTTV-LPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLE  353 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~  353 (361)
                      .+++..|.+|+...++.+. ..|||. ||..|+..|......||.||..+.....
T Consensus        18 ~~~~l~C~~C~~vl~~p~~~~~cgh~-fC~~C~~~~~~~~~~cp~~~~~~~~~~~   71 (391)
T KOG0297|consen   18 LDENLLCPICMSVLRDPVQTTTCGHR-FCAGCLLESLSNHQKCPVCRQELTQAEE   71 (391)
T ss_pred             CcccccCccccccccCCCCCCCCCCc-ccccccchhhccCcCCcccccccchhhc
Confidence            4567899999999999988 599999 9999999998888899999887765433

>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=95.71  E-value=0.0048  Score=60.32  Aligned_cols=49  Identities=24%  Similarity=0.495  Sum_probs=42.4

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL  352 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll  352 (361)
                      ...|-||...+.+.|+..|+|. ||..|+..-......|.||-+.+.++.
T Consensus       241 Pf~c~icr~~f~~pVvt~c~h~-fc~~ca~~~~qk~~~c~vC~~~t~g~~  289 (313)
T KOG1813|consen  241 PFKCFICRKYFYRPVVTKCGHY-FCEVCALKPYQKGEKCYVCSQQTHGSF  289 (313)
T ss_pred             CccccccccccccchhhcCCce-eehhhhccccccCCcceeccccccccc
Confidence            3569999999999999999999 999999886556689999998887653

>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=95.26  E-value=0.007  Score=66.85  Aligned_cols=48  Identities=23%  Similarity=0.592  Sum_probs=36.1

Q ss_pred             CCCCeeeecccCCC-------CeEEeCCCCcccCHHHHHHHhccC--CCCcccccccc
Q 046132          301 DPGKECVICLSEPR-------DTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~-------d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~  349 (361)
                      ..-.||.||++...       .-..--|+|- |+..|+-+|...+  ++||+||..|.
T Consensus      1467 sG~eECaICYsvL~~vdr~lPskrC~TCknK-FH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219        1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNK-FHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred             CCcchhhHHHHHHHHHhccCCccccchhhhh-hhHHHHHHHHHhcCCCCCCccccccc
Confidence            34578999997321       1233459999 9999999998764  67999998775

>KOG3039 consensus Uncharacterized conserved protein [Function unknown]

Probab=94.95  E-value=0.027  Score=54.08  Aligned_cols=75  Identities=16%  Similarity=0.308  Sum_probs=52.1

Q ss_pred             ecCeeeeehhhhcCCCCCCCCCC------CCCCCCeeeecccCCCCe----EEeCCCCcccCHHHHHHHhccCCCCcccc
Q 046132          276 VNGMRYELQEIYGIGNSVDGDVD------ANDPGKECVICLSEPRDT----TVLPCRHMCMCSGCAKVLRFQTNRCPICR  345 (361)
Q Consensus       276 v~g~~yeLqeiygi~~s~~~~~~------~~~~~~eCvICl~~~~d~----vlLPCgH~cfC~~Ca~~l~~qs~~CPICR  345 (361)
                      +.|....|.+++.+.=....+.+      .......|.||.+...++    ++-||||+ +|.+|++.|...-..||+|-
T Consensus       188 ~s~kplklkdL~~VkFT~l~s~~~et~l~a~s~ryiCpvtrd~LtNt~~ca~Lr~sg~V-v~~ecvEklir~D~v~pv~d  266 (303)
T KOG3039|consen  188 VSGKPLKLKDLFAVKFTPLNSEETETKLIAASKRYICPVTRDTLTNTTPCAVLRPSGHV-VTKECVEKLIRKDMVDPVTD  266 (303)
T ss_pred             CCCCccchhhcceeeeeecCCchhhhhhhhhccceecccchhhhcCccceEEeccCCcE-eeHHHHHHhccccccccCCC
Confidence            45555667777665322211111      112456899999866653    56789999 99999999988888999999


Q ss_pred             ccccce
Q 046132          346 QPVERL  351 (361)
Q Consensus       346 ~~I~~l  351 (361)
                      .+....
T Consensus       267 ~plkdr  272 (303)
T KOG3039|consen  267 KPLKDR  272 (303)
T ss_pred             CcCccc
Confidence            888653

>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]

Probab=94.90  E-value=0.026  Score=55.76  Aligned_cols=55  Identities=9%  Similarity=-0.100  Sum_probs=46.7

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEE
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI  354 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I  354 (361)
                      +.....++|.+|-.....+++.+|+|.-||.+||..  .-...|++|...+..+++|
T Consensus       338 ~~~~s~~~~~~~~~~~~st~~~~~~~n~~~~~~a~~--s~~~~~~~c~~~~~~~~~i  392 (394)
T KOG2113|consen  338 NGLMSSLKGTSAGFGLLSTIWSGGNMNLSPGSLASA--SASPTSSTCDHNDHTLVPI  392 (394)
T ss_pred             ccchhhcccccccCceeeeEeecCCcccChhhhhhc--ccCCccccccccceeeeec
Confidence            344556899999999999999999999999999983  3457899999888888876

>KOG4367 consensus Predicted Zn-finger protein [Function unknown]

Probab=94.72  E-value=0.017  Score=59.30  Aligned_cols=37  Identities=35%  Similarity=0.789  Sum_probs=32.1

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT  338 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs  338 (361)
                      +++..|.||-+-.+++++|+|+|. +|..|+.....++
T Consensus         2 eeelkc~vc~~f~~epiil~c~h~-lc~~ca~~~~~~t   38 (699)
T KOG4367|consen    2 EEELKCPVCGSFYREPIILPCSHN-LCQACARNILVQT   38 (699)
T ss_pred             cccccCceehhhccCceEeecccH-HHHHHHHhhcccC
Confidence            345789999999999999999999 9999999865543

>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]

Probab=94.68  E-value=0.012  Score=61.66  Aligned_cols=49  Identities=27%  Similarity=0.588  Sum_probs=39.7

Q ss_pred             CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-----cCCCCccccccc
Q 046132          299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-----QTNRCPICRQPV  348 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-----qs~~CPICR~~I  348 (361)
                      ++.+..+|.+|.+...|.+...|.|. ||..|+.....     ..-+||+|-..+
T Consensus       532 enk~~~~C~lc~d~aed~i~s~ChH~-FCrlCi~eyv~~f~~~~nvtCP~C~i~L  585 (791)
T KOG1002|consen  532 ENKGEVECGLCHDPAEDYIESSCHHK-FCRLCIKEYVESFMENNNVTCPVCHIGL  585 (791)
T ss_pred             cccCceeecccCChhhhhHhhhhhHH-HHHHHHHHHHHhhhcccCCCCccccccc
Confidence            44556799999999999999999999 99999976332     236799997654

>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule

Probab=94.59  E-value=0.016  Score=42.12  Aligned_cols=45  Identities=27%  Similarity=0.843  Sum_probs=26.2

Q ss_pred             eeeecccCCCCeEEeCCC-CcccCHHHHHHHhccCCCCccccccccceE
Q 046132          305 ECVICLSEPRDTTVLPCR-HMCMCSGCAKVLRFQTNRCPICRQPVERLL  352 (361)
Q Consensus       305 eCvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~qs~~CPICR~~I~~ll  352 (361)
                      -|.-|.-+.+..  +-|. |. +|..|+..|...+..|+||..++...+
T Consensus         4 nCKsCWf~~k~L--i~C~dHY-LCl~CLt~ml~~s~~C~iC~~~LPtki   49 (50)
T PF03854_consen    4 NCKSCWFANKGL--IKCSDHY-LCLNCLTLMLSRSDRCPICGKPLPTKI   49 (50)
T ss_dssp             ---SS-S--SSE--EE-SS-E-EEHHHHHHT-SSSSEETTTTEE----S
T ss_pred             cChhhhhcCCCe--eeecchh-HHHHHHHHHhccccCCCcccCcCcccc
Confidence            377777555544  4576 77 999999999999999999988776543

Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.

>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=94.47  E-value=0.016  Score=59.00  Aligned_cols=44  Identities=30%  Similarity=0.666  Sum_probs=33.1

Q ss_pred             CCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHh--------ccCCCCccccc
Q 046132          302 PGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLR--------FQTNRCPICRQ  346 (361)
Q Consensus       302 ~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~--------~qs~~CPICR~  346 (361)
                      ....|.||+++...   ..++||+|+ ||..|++...        .+.-+||-|..
T Consensus       183 slf~C~ICf~e~~G~~c~~~lpC~Hv-~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C  237 (445)
T KOG1814|consen  183 SLFDCCICFEEQMGQHCFKFLPCSHV-FCKSCLKDYFTIQIQEGQVSCLKCPDPKC  237 (445)
T ss_pred             hcccceeeehhhcCcceeeecccchH-HHHHHHHHHHHHhhhcceeeeecCCCCCC
Confidence            34689999997765   678999999 9999998732        12356876644

>KOG3002 consensus Zn finger protein [General function prediction only]

Probab=94.19  E-value=0.024  Score=55.94  Aligned_cols=44  Identities=30%  Similarity=0.847  Sum_probs=36.2

Q ss_pred             CCCeeeecccCCCCeEEeCC--CCcccCHHHHHHHhccCCCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVLPC--RHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPC--gH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +-.+|.||+....-.++ -|  ||+ .|..|...+.   ++||.||.++..
T Consensus        47 ~lleCPvC~~~l~~Pi~-QC~nGHl-aCssC~~~~~---~~CP~Cr~~~g~   92 (299)
T KOG3002|consen   47 DLLDCPVCFNPLSPPIF-QCDNGHL-ACSSCRTKVS---NKCPTCRLPIGN   92 (299)
T ss_pred             hhccCchhhccCcccce-ecCCCcE-ehhhhhhhhc---ccCCcccccccc
Confidence            34689999988877765 56  699 9999997764   789999999874

>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B

Probab=94.19  E-value=0.024  Score=41.34  Aligned_cols=42  Identities=33%  Similarity=0.795  Sum_probs=20.9

Q ss_pred             eeecccCC--CCeEEeC--CCCcccCHHHHHHHhc-cCCCCccccccc
Q 046132          306 CVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRF-QTNRCPICRQPV  348 (361)
Q Consensus       306 CvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~-qs~~CPICR~~I  348 (361)
                      |.+|.++.  ++..++|  ||+. +|..|...++. ...+||-||.+.
T Consensus         1 cp~C~e~~d~~d~~~~PC~Cgf~-IC~~C~~~i~~~~~g~CPgCr~~Y   47 (48)
T PF14570_consen    1 CPLCDEELDETDKDFYPCECGFQ-ICRFCYHDILENEGGRCPGCREPY   47 (48)
T ss_dssp             -TTTS-B--CCCTT--SSTTS-----HHHHHHHTTSS-SB-TTT--B-
T ss_pred             CCCcccccccCCCccccCcCCCc-HHHHHHHHHHhccCCCCCCCCCCC
Confidence            45666543  4445666  7888 99999999875 468899999874

>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function

Probab=94.18  E-value=0.058  Score=48.59  Aligned_cols=52  Identities=29%  Similarity=0.678  Sum_probs=37.9

Q ss_pred             CCeeeecccCCCCeEEeCCC-Ccc-----c------CHHHHHHHhcc-------------------------------CC
Q 046132          303 GKECVICLSEPRDTTVLPCR-HMC-----M------CSGCAKVLRFQ-------------------------------TN  339 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCg-H~c-----f------C~~Ca~~l~~q-------------------------------s~  339 (361)
                      +..|.|||+-+-++|||-|. |--     +      .+.|++..+..                               ..
T Consensus         2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L   81 (162)
T PF07800_consen    2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSESQEQPEL   81 (162)
T ss_pred             CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccccccccc
Confidence            46799999999999999764 211     2      36788775420                               13


Q ss_pred             CCccccccccceEEE
Q 046132          340 RCPICRQPVERLLEI  354 (361)
Q Consensus       340 ~CPICR~~I~~ll~I  354 (361)
                      .||+||..|.+...|
T Consensus        82 ~CPLCRG~V~GWtvv   96 (162)
T PF07800_consen   82 ACPLCRGEVKGWTVV   96 (162)
T ss_pred             cCccccCceeceEEc
Confidence            599999999887665

The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.

>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]

Probab=94.01  E-value=0.013  Score=58.05  Aligned_cols=50  Identities=24%  Similarity=0.602  Sum_probs=41.5

Q ss_pred             CCCCeeeecccCCCCeE-EeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132          301 DPGKECVICLSEPRDTT-VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL  351 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~v-lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l  351 (361)
                      .....|.+|-.-..|++ +.-|-|. ||.+|+-.-....+.||.|...|...
T Consensus        13 n~~itC~LC~GYliDATTI~eCLHT-FCkSCivk~l~~~~~CP~C~i~ih~t   63 (331)
T KOG2660|consen   13 NPHITCRLCGGYLIDATTITECLHT-FCKSCIVKYLEESKYCPTCDIVIHKT   63 (331)
T ss_pred             ccceehhhccceeecchhHHHHHHH-HHHHHHHHHHHHhccCCccceeccCc
Confidence            34568999999999876 4559999 99999998666688999999988664

>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=93.77  E-value=0.033  Score=54.14  Aligned_cols=50  Identities=22%  Similarity=0.566  Sum_probs=38.2

Q ss_pred             CCCCCeeeecccCCC----------CeEEeCCCCcccCHHHHHHHhc--cCCCCccccccccc
Q 046132          300 NDPGKECVICLSEPR----------DTTVLPCRHMCMCSGCAKVLRF--QTNRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~----------d~vlLPCgH~cfC~~Ca~~l~~--qs~~CPICR~~I~~  350 (361)
                      ..++..|.||-...-          ++--|.|+|. |...|++-|-.  ++.+||-|...|+.
T Consensus       221 hl~d~vCaVCg~~~~~s~~eegvienty~LsCnHv-FHEfCIrGWcivGKkqtCPYCKekVdl  282 (328)
T KOG1734|consen  221 HLSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHV-FHEFCIRGWCIVGKKQTCPYCKEKVDL  282 (328)
T ss_pred             CCCcchhHhhcchheeecchhhhhhhheeeecccc-hHHHhhhhheeecCCCCCchHHHHhhH
Confidence            345678999975433          3446899999 99999999865  45689999887754

>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length

Probab=93.73  E-value=0.029  Score=49.26  Aligned_cols=34  Identities=26%  Similarity=0.581  Sum_probs=27.6

Q ss_pred             CCeeeecccCCCC---eEEeCCC------CcccCHHHHHHHhcc
Q 046132          303 GKECVICLSEPRD---TTVLPCR------HMCMCSGCAKVLRFQ  337 (361)
Q Consensus       303 ~~eCvICl~~~~d---~vlLPCg------H~cfC~~Ca~~l~~q  337 (361)
                      ..||.||+++.-+   .+.+.|+      || ||.+|.++|...
T Consensus        26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkm-fc~~C~~rw~~~   68 (134)
T PF05883_consen   26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKM-FCADCDKRWRRE   68 (134)
T ss_pred             CeeehhhhhhhhcCCCEEEEecCCeehHHHH-HHHHHHHHHHhh
Confidence            5799999997655   5678888      77 999999999543

The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.

>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]

Probab=93.39  E-value=0.032  Score=60.72  Aligned_cols=45  Identities=29%  Similarity=0.649  Sum_probs=37.5

Q ss_pred             CeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132          304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQPVER  350 (361)
Q Consensus       304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~  350 (361)
                      ..|.||++ ..+.++..|+|. ||.+|........  ..||+||..+..
T Consensus       455 ~~c~ic~~-~~~~~it~c~h~-~c~~c~~~~i~~~~~~~~~~cr~~l~~  501 (674)
T KOG1001|consen  455 HWCHICCD-LDSFFITRCGHD-FCVECLKKSIQQSENAPCPLCRNVLKE  501 (674)
T ss_pred             cccccccc-cccceeecccch-HHHHHHHhccccccCCCCcHHHHHHHH
Confidence            78999999 888889999999 9999998854432  469999987753

>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=93.12  E-value=0.038  Score=52.72  Aligned_cols=43  Identities=30%  Similarity=0.883  Sum_probs=30.5

Q ss_pred             eeeecccCCC-Ce-EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          305 ECVICLSEPR-DT-TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       305 eCvICl~~~~-d~-vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      .|-.|.-... +. -|+.|+|+ ||..|...-.  ...|++|+..|..
T Consensus         5 hCn~C~~~~~~~~f~LTaC~Hv-fC~~C~k~~~--~~~C~lCkk~ir~   49 (233)
T KOG4739|consen    5 HCNKCFRFPSQDPFFLTACRHV-FCEPCLKASS--PDVCPLCKKSIRI   49 (233)
T ss_pred             EeccccccCCCCceeeeechhh-hhhhhcccCC--ccccccccceeee
Confidence            4777765433 33 46789999 9999987643  1289999998754

>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.92  E-value=0.078  Score=53.85  Aligned_cols=49  Identities=22%  Similarity=0.543  Sum_probs=34.0

Q ss_pred             CCeeeecccCC---CCe-EEeCCCCcccCHHHHHHHhccC---CCCccccccccceE
Q 046132          303 GKECVICLSEP---RDT-TVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVERLL  352 (361)
Q Consensus       303 ~~eCvICl~~~---~d~-vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~~ll  352 (361)
                      ..+|.||.+-.   .+. .+--|||. |...|+..|....   ..|||||..+....
T Consensus         4 ~A~C~Ic~d~~p~~~~l~~i~~cGhi-fh~~cl~qwfe~~Ps~R~cpic~ik~~~r~   59 (465)
T KOG0827|consen    4 MAECHICIDGRPNDHELGPIGTCGHI-FHTTCLTQWFEGDPSNRGCPICQIKLQERH   59 (465)
T ss_pred             cceeeEeccCCccccccccccchhhH-HHHHHHHHHHccCCccCCCCceeeccccee
Confidence            35899995422   222 23449999 9999999997643   47999995555443

>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.64  E-value=0.088  Score=53.76  Aligned_cols=46  Identities=30%  Similarity=0.663  Sum_probs=36.2

Q ss_pred             CCCCeeeecccCCC-----CeEEeCCCCcccCHHHHHHHhccC--CCCcccccc
Q 046132          301 DPGKECVICLSEPR-----DTTVLPCRHMCMCSGCAKVLRFQT--NRCPICRQP  347 (361)
Q Consensus       301 ~~~~eCvICl~~~~-----d~vlLPCgH~cfC~~Ca~~l~~qs--~~CPICR~~  347 (361)
                      +.+..|.||++...     ..+.+-|||+ |=..|++.|.-++  ..||.|...
T Consensus         2 d~g~tcpiclds~~~~g~hr~vsl~cghl-Fgs~cie~wl~k~~~~~cp~c~~k   54 (463)
T KOG1645|consen    2 DCGTTCPICLDSYTTAGNHRIVSLQCGHL-FGSQCIEKWLGKKTKMQCPLCSGK   54 (463)
T ss_pred             CccccCceeeeeeeecCceEEeeeccccc-ccHHHHHHHHhhhhhhhCcccCCh
Confidence            35689999998543     3466789999 9999999998643  569999654

>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0

Probab=92.26  E-value=0.078  Score=46.54  Aligned_cols=48  Identities=25%  Similarity=0.580  Sum_probs=39.1

Q ss_pred             CCeeeecccCCCCeEEeC----CCCcccCHHHHHHHhccC---CCCccccccccce
Q 046132          303 GKECVICLSEPRDTTVLP----CRHMCMCSGCAKVLRFQT---NRCPICRQPVERL  351 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLP----CgH~cfC~~Ca~~l~~qs---~~CPICR~~I~~l  351 (361)
                      --+|-||.+...|-.+|-    ||-. +|..|-..||.-.   ..||+|++.+.+.
T Consensus        80 lYeCnIC~etS~ee~FLKPneCCgY~-iCn~Cya~LWK~~~~ypvCPvCkTSFKss  134 (140)
T PF05290_consen   80 LYECNICKETSAEERFLKPNECCGYS-ICNACYANLWKFCNLYPVCPVCKTSFKSS  134 (140)
T ss_pred             ceeccCcccccchhhcCCcccccchH-HHHHHHHHHHHHcccCCCCCccccccccc
Confidence            358999999988888774    8877 9999999877543   6799999988653

>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]

Probab=92.05  E-value=0.1  Score=50.59  Aligned_cols=44  Identities=36%  Similarity=0.807  Sum_probs=35.0

Q ss_pred             CeeeecccCCCC------eEEeCCCCcccCHHHHHHHhccC-CCCccccccc
Q 046132          304 KECVICLSEPRD------TTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPV  348 (361)
Q Consensus       304 ~eCvICl~~~~d------~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I  348 (361)
                      .+|.||-+...+      +.+|-|||. +|..|+..+...+ ..||.||...
T Consensus         4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~-~c~~c~~~l~~~~~i~cpfcR~~~   54 (296)
T KOG4185|consen    4 PECEICNEDYSSEDGDHIPRVLKCGHT-ICQNCASKLLGNSRILCPFCRETT   54 (296)
T ss_pred             CceeecCccccccCcccCCcccccCce-ehHhHHHHHhcCceeeccCCCCcc
Confidence            479999875544      567789999 9999999976554 5699999985

>COG5175 MOT2 Transcriptional repressor [Transcription]

Probab=91.82  E-value=0.079  Score=53.01  Aligned_cols=46  Identities=28%  Similarity=0.788  Sum_probs=33.9

Q ss_pred             CeeeecccCC--CCeEEeC--CCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          304 KECVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       304 ~eCvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      ..|..|++..  .|--|.|  ||-. .|..|...++.. ..+||-||...+.
T Consensus        15 d~cplcie~mditdknf~pc~cgy~-ic~fc~~~irq~lngrcpacrr~y~d   65 (480)
T COG5175          15 DYCPLCIEPMDITDKNFFPCPCGYQ-ICQFCYNNIRQNLNGRCPACRRKYDD   65 (480)
T ss_pred             ccCcccccccccccCCcccCCcccH-HHHHHHHHHHhhccCCChHhhhhccc
Confidence            3499999853  3444555  7777 899999887754 4789999987754

>PHA03096 p28-like protein; Provisional

Probab=91.75  E-value=0.087  Score=51.75  Aligned_cols=42  Identities=24%  Similarity=0.324  Sum_probs=30.3

Q ss_pred             CeeeecccCC--------CCeEEeCCCCcccCHHHHHHHhccC---CCCccccc
Q 046132          304 KECVICLSEP--------RDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQ  346 (361)
Q Consensus       304 ~eCvICl~~~--------~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~  346 (361)
                      .+|.|||+..        +..++--|.|. ||..|+..|+..+   ..|+.||.
T Consensus       179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~-fc~~ci~~wr~~~~~~e~~~~c~~  231 (284)
T PHA03096        179 KICGICLENIKAKYIIKKYYGILSEIKHE-FNIFCIKIWMTESLYKETEPENRR  231 (284)
T ss_pred             hhcccchhhhhhhccccccccccccCCcH-HHHHHHHHHHHhhhhcccCccccc
Confidence            7899999843        33456679999 9999999998643   33444443

>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]

Probab=91.72  E-value=0.1  Score=60.19  Aligned_cols=50  Identities=26%  Similarity=0.689  Sum_probs=38.7

Q ss_pred             CCCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhcc----------CCCCccccccccc
Q 046132          300 NDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQ----------TNRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~q----------s~~CPICR~~I~~  350 (361)
                      .+.+..|+||+.+.-.   .+-|-|+|+ |...|.+.+...          ...||||..+|..
T Consensus      3483 QD~DDmCmICFTE~L~AAP~IqL~C~Hi-FHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH 3545 (3738)
T KOG1428|consen 3483 QDADDMCMICFTEALSAAPAIQLDCSHI-FHLQCCRRVLENRWLGPRITFGFISCPICKNKINH 3545 (3738)
T ss_pred             cccCceEEEEehhhhCCCcceecCCccc-hhHHHHHHHHHhcccCCeeEEeeeecccccchhhh
Confidence            3556789999997654   456899999 999999875432          2469999998865

>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A

Probab=91.64  E-value=0.025  Score=44.12  Aligned_cols=46  Identities=28%  Similarity=0.590  Sum_probs=21.5

Q ss_pred             CCeeeecccCCC-C---e-EEe---CCCCcccCHHHHHHHhcc---C--------CCCcccccccc
Q 046132          303 GKECVICLSEPR-D---T-TVL---PCRHMCMCSGCAKVLRFQ---T--------NRCPICRQPVE  349 (361)
Q Consensus       303 ~~eCvICl~~~~-d---~-vlL---PCgH~cfC~~Ca~~l~~q---s--------~~CPICR~~I~  349 (361)
                      +.+|.||++... +   + ++-   .|++. |...|+..|...   +        .+||.|+++|.
T Consensus         2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~-fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~   66 (70)
T PF11793_consen    2 ELECGICYSYRLDDGEIPDVVCPNPSCGKK-FHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS   66 (70)
T ss_dssp             --S-SSS--SS-TT-----B--S-TT-----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred             CCCCCcCCcEecCCCCcCceEcCCcccCCH-HHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence            357999998644 2   1 111   47777 899999998652   1        35999999775

>PHA02825 LAP/PHD finger-like protein; Provisional

Probab=91.58  E-value=0.21  Score=45.13  Aligned_cols=49  Identities=22%  Similarity=0.371  Sum_probs=36.8

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcc----cCHHHHHHHhccC--CCCcccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMC----MCSGCAKVLRFQT--NRCPICRQPVE  349 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~c----fC~~Ca~~l~~qs--~~CPICR~~I~  349 (361)
                      ...+.+|-||++...+ ...||+...    ...+|++.|...+  ..|++|++.+.
T Consensus         5 s~~~~~CRIC~~~~~~-~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~   59 (162)
T PHA02825          5 SLMDKCCWICKDEYDV-VTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYN   59 (162)
T ss_pred             CCCCCeeEecCCCCCC-ccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEE
Confidence            4556899999988653 456776532    4789999998765  57999998764

>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]

Probab=91.12  E-value=0.048  Score=53.94  Aligned_cols=47  Identities=30%  Similarity=0.714  Sum_probs=32.0

Q ss_pred             eeeecccCCCC-eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEE
Q 046132          305 ECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI  354 (361)
Q Consensus       305 eCvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I  354 (361)
                      -|.-|---... ..++||.|+ ||.+||..-.  -+.||.|-..|.++.++
T Consensus        92 fCd~Cd~PI~IYGRmIPCkHv-FCl~CAr~~~--dK~Cp~C~d~VqrIeq~  139 (389)
T KOG2932|consen   92 FCDRCDFPIAIYGRMIPCKHV-FCLECARSDS--DKICPLCDDRVQRIEQI  139 (389)
T ss_pred             eecccCCcceeeecccccchh-hhhhhhhcCc--cccCcCcccHHHHHHHh
Confidence            46666433222 347899999 9999997532  36799998877665433

>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]

Probab=90.84  E-value=0.22  Score=40.13  Aligned_cols=31  Identities=23%  Similarity=0.313  Sum_probs=27.3

Q ss_pred             EEeCCCCcccCHHHHHHHhccCCCCccccccc
Q 046132          317 TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV  348 (361)
Q Consensus       317 vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I  348 (361)
                      +.--|.|. |..-|+.+|......||+||+..
T Consensus        50 ~wG~CnHa-FH~HCI~rWL~Tk~~CPld~q~w   80 (88)
T COG5194          50 VWGVCNHA-FHDHCIYRWLDTKGVCPLDRQTW   80 (88)
T ss_pred             EEEecchH-HHHHHHHHHHhhCCCCCCCCcee
Confidence            34459999 99999999999889999999875

>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]

Probab=90.15  E-value=0.13  Score=50.78  Aligned_cols=42  Identities=26%  Similarity=0.738  Sum_probs=34.6

Q ss_pred             CeeeecccCCCCeEEeC-CCCcccCHHHHHHHhc-cCCCCccccc
Q 046132          304 KECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRF-QTNRCPICRQ  346 (361)
Q Consensus       304 ~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~-qs~~CPICR~  346 (361)
                      ..|..|....++.+-.+ |+|. ||.+|+..... ....||.|..
T Consensus       275 LkCplc~~Llrnp~kT~cC~~~-fc~eci~~al~dsDf~CpnC~r  318 (427)
T COG5222         275 LKCPLCHCLLRNPMKTPCCGHT-FCDECIGTALLDSDFKCPNCSR  318 (427)
T ss_pred             ccCcchhhhhhCcccCccccch-HHHHHHhhhhhhccccCCCccc
Confidence            78999999888888775 8899 99999997444 4468999965

>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]

Probab=90.05  E-value=0.21  Score=49.78  Aligned_cols=54  Identities=24%  Similarity=0.563  Sum_probs=39.9

Q ss_pred             CCCCeeeecccCCCCeEEeCC-CCcccCHHHHHHHhccCCCCcccccc--ccceEEEE
Q 046132          301 DPGKECVICLSEPRDTTVLPC-RHMCMCSGCAKVLRFQTNRCPICRQP--VERLLEIK  355 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPC-gH~cfC~~Ca~~l~~qs~~CPICR~~--I~~ll~I~  355 (361)
                      .+...|.||+....+..++-- |-+ ||+.|+-.-....++||+--.+  ++.+++++
T Consensus       298 ~~~~~CpvClk~r~Nptvl~vSGyV-fCY~Ci~~Yv~~~~~CPVT~~p~~v~~l~rl~  354 (357)
T KOG0826|consen  298 PDREVCPVCLKKRQNPTVLEVSGYV-FCYPCIFSYVVNYGHCPVTGYPASVDHLIRLF  354 (357)
T ss_pred             CccccChhHHhccCCCceEEecceE-EeHHHHHHHHHhcCCCCccCCcchHHHHHHHh
Confidence            445789999998887666554 776 9999999977778899985444  34555543

>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C

Probab=88.74  E-value=0.3  Score=36.68  Aligned_cols=41  Identities=22%  Similarity=0.358  Sum_probs=28.5

Q ss_pred             CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhc--cCCCCcc
Q 046132          302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRF--QTNRCPI  343 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~--qs~~CPI  343 (361)
                      -...|.|.+...++++.- -|+|. |..+.+..+..  ....||+
T Consensus        10 ~~~~CPiT~~~~~~PV~s~~C~H~-fek~aI~~~i~~~~~~~CPv   53 (57)
T PF11789_consen   10 ISLKCPITLQPFEDPVKSKKCGHT-FEKEAILQYIQRNGSKRCPV   53 (57)
T ss_dssp             --SB-TTTSSB-SSEEEESSS--E-EEHHHHHHHCTTTS-EE-SC
T ss_pred             eccCCCCcCChhhCCcCcCCCCCe-ecHHHHHHHHHhcCCCCCCC
Confidence            457899999999999875 79999 99999999873  3456998

>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]

Probab=87.61  E-value=0.23  Score=49.10  Aligned_cols=46  Identities=35%  Similarity=0.699  Sum_probs=33.1

Q ss_pred             CCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhc-----------------c------CCCCcccccccc
Q 046132          303 GKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRF-----------------Q------TNRCPICRQPVE  349 (361)
Q Consensus       303 ~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~-----------------q------s~~CPICR~~I~  349 (361)
                      ...|+|||--+.+   .++.+|-|. |...|+.+...                 |      ...|||||..|.
T Consensus       115 ~gqCvICLygfa~~~~ft~T~C~Hy-~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~  186 (368)
T KOG4445|consen  115 NGQCVICLYGFASSPAFTVTACDHY-MHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIK  186 (368)
T ss_pred             CCceEEEEEeecCCCceeeehhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcc
Confidence            4579998865443   567899999 99999876210                 1      145999999873

>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans

Probab=87.15  E-value=0.7  Score=46.88  Aligned_cols=29  Identities=31%  Similarity=0.619  Sum_probs=21.6

Q ss_pred             CCCcccCHHHHHHHhc-------------cCCCCccccccccc
Q 046132          321 CRHMCMCSGCAKVLRF-------------QTNRCPICRQPVER  350 (361)
Q Consensus       321 CgH~cfC~~Ca~~l~~-------------qs~~CPICR~~I~~  350 (361)
                      ||=| -|.+|+.+|.-             .+..||.||+.+.-
T Consensus       311 CRPm-WC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCi  352 (358)
T PF10272_consen  311 CRPM-WCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCI  352 (358)
T ss_pred             ccch-HHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCccccee
Confidence            6666 69999988742             23569999998753

They are purported to be transmembrane protein-precursors but their function is unknown.

>PHA02862 5L protein; Provisional

Probab=86.66  E-value=0.64  Score=41.50  Aligned_cols=46  Identities=15%  Similarity=0.330  Sum_probs=34.5

Q ss_pred             CCeeeecccCCCCeEEeCCCCcc----cCHHHHHHHhccC--CCCcccccccc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMC----MCSGCAKVLRFQT--NRCPICRQPVE  349 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~c----fC~~Ca~~l~~qs--~~CPICR~~I~  349 (361)
                      +..|-||++...+. +-||+...    ...+|+.+|...+  ..|++|+.+..
T Consensus         2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~   53 (156)
T PHA02862          2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN   53 (156)
T ss_pred             CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence            46899999987554 56777532    4789999998654  56999998764

>KOG3113 consensus Uncharacterized conserved protein [Function unknown]

Probab=85.98  E-value=0.96  Score=43.82  Aligned_cols=58  Identities=19%  Similarity=0.277  Sum_probs=42.7

Q ss_pred             CCCCeeeeccc----CCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCCCC
Q 046132          301 DPGKECVICLS----EPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE  361 (361)
Q Consensus       301 ~~~~eCvICl~----~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~~~  361 (361)
                      .....|.|---    ..+-.++..|||+ |=..-++.+.  ...|++|.+.+..--.|-+|..+|
T Consensus       109 ~a~fiCPvtgleMng~~~F~~l~~CGcV-~SerAlKeik--as~C~~C~a~y~~~dvIvlNg~~E  170 (293)
T KOG3113|consen  109 RARFICPVTGLEMNGKYRFCALRCCGCV-FSERALKEIK--ASVCHVCGAAYQEDDVIVLNGTEE  170 (293)
T ss_pred             cceeecccccceecceEEEEEEecccee-ccHHHHHHhh--hccccccCCcccccCeEeeCCCHH
Confidence            34567887653    3445678999999 8766666654  578999999998887787877553

>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]

Probab=81.75  E-value=0.76  Score=38.80  Aligned_cols=29  Identities=21%  Similarity=0.330  Sum_probs=25.5

Q ss_pred             EeCCCCcccCHHHHHHHhccCCCCcccccc
Q 046132          318 VLPCRHMCMCSGCAKVLRFQTNRCPICRQP  347 (361)
Q Consensus       318 lLPCgH~cfC~~Ca~~l~~qs~~CPICR~~  347 (361)
                      .--|.|. |..-|+.+|..+.+.||+|.+.
T Consensus        78 WG~CNHa-FH~hCisrWlktr~vCPLdn~e  106 (114)
T KOG2930|consen   78 WGVCNHA-FHFHCISRWLKTRNVCPLDNKE  106 (114)
T ss_pred             eeecchH-HHHHHHHHHHhhcCcCCCcCcc
Confidence            3459999 9999999999999999999764

>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1

Probab=81.43  E-value=0.65  Score=37.64  Aligned_cols=31  Identities=26%  Similarity=0.667  Sum_probs=24.5

Q ss_pred             CCCCeeeecccCCCC--eEEeCCCCcccCHHHHH
Q 046132          301 DPGKECVICLSEPRD--TTVLPCRHMCMCSGCAK  332 (361)
Q Consensus       301 ~~~~eCvICl~~~~d--~vlLPCgH~cfC~~Ca~  332 (361)
                      +++..|.||.....+  .++.||||. ++..|++
T Consensus        76 ~~~~~C~vC~k~l~~~~f~~~p~~~v-~H~~C~~  108 (109)
T PF10367_consen   76 TESTKCSVCGKPLGNSVFVVFPCGHV-VHYSCIK  108 (109)
T ss_pred             CCCCCccCcCCcCCCceEEEeCCCeE-Eeccccc
Confidence            445679999986654  567899999 9999975

Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].

>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]

Probab=81.36  E-value=1.2  Score=44.54  Aligned_cols=48  Identities=25%  Similarity=0.561  Sum_probs=30.7

Q ss_pred             CCCCeeeecccCC-------------------CCeEEeCCCCcccCHHHHHHHhcc----------CCCCccccccccc
Q 046132          301 DPGKECVICLSEP-------------------RDTTVLPCRHMCMCSGCAKVLRFQ----------TNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~-------------------~d~vlLPCgH~cfC~~Ca~~l~~q----------s~~CPICR~~I~~  350 (361)
                      ..+++|.+|+..-                   -+-+|-||||+  |.+=....+.+          ...||.|-+.+..
T Consensus       339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv--~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~g  415 (429)
T KOG3842|consen  339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHV--CSEKTVKYWSQIPLPHGTHAFHAACPFCATQLAG  415 (429)
T ss_pred             cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccc--cchhhhhHhhcCcCCCccccccccCcchhhhhcc
Confidence            3467999998632                   23456799999  44443333332          1469999887754

>KOG3899 consensus Uncharacterized conserved protein [Function unknown]

Probab=81.27  E-value=1.1  Score=44.21  Aligned_cols=39  Identities=31%  Similarity=0.803  Sum_probs=28.2

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHh-------------ccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLR-------------FQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~-------------~qs~~CPICR~~I~~  350 (361)
                      +.+.-|.-|+          |+-+ -|.+|+..|.             .++..||.||+.+.-
T Consensus       315 ~~ga~c~nc~----------crp~-wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci  366 (381)
T KOG3899|consen  315 DIGAPCENCI----------CRPL-WCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI  366 (381)
T ss_pred             ccCCcccccc----------cccH-HHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence            3445566664          7777 7999998864             245789999998853

>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]

Probab=81.19  E-value=0.49  Score=45.52  Aligned_cols=45  Identities=29%  Similarity=0.751  Sum_probs=32.5

Q ss_pred             CCCeeeecccCC---CCe--EEeC-CCCcccCHHHHHHHhccC-CCCc--ccccc
Q 046132          302 PGKECVICLSEP---RDT--TVLP-CRHMCMCSGCAKVLRFQT-NRCP--ICRQP  347 (361)
Q Consensus       302 ~~~eCvICl~~~---~d~--vlLP-CgH~cfC~~Ca~~l~~qs-~~CP--ICR~~  347 (361)
                      .+..|.||.+..   -|+  .+-| |-|. +|.+|..++.+.. ..||  -|-.-
T Consensus         9 ~d~~CPvCksDrYLnPdik~linPECyHr-mCESCvdRIFs~GpAqCP~~gC~kI   62 (314)
T COG5220           9 EDRRCPVCKSDRYLNPDIKILINPECYHR-MCESCVDRIFSRGPAQCPYKGCGKI   62 (314)
T ss_pred             hcccCCccccccccCCCeEEEECHHHHHH-HHHHHHHHHhcCCCCCCCCccHHHH
Confidence            456899998742   233  3446 9999 9999999977654 5699  88553

>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]

Probab=81.13  E-value=0.44  Score=42.10  Aligned_cols=45  Identities=31%  Similarity=0.819  Sum_probs=28.2

Q ss_pred             CCCCeeeeccc-CCCCeEEeCCCCcc------cCHHHHHHHhccCC----CCcccccccc
Q 046132          301 DPGKECVICLS-EPRDTTVLPCRHMC------MCSGCAKVLRFQTN----RCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~-~~~d~vlLPCgH~c------fC~~Ca~~l~~qs~----~CPICR~~I~  349 (361)
                      .++..|.||+. ++.|.    |||.|      ||..|.-++...++    .|-.||....
T Consensus        63 ~ddatC~IC~KTKFADG----~GH~C~YCq~r~CARCGGrv~lrsNKv~wvcnlc~k~q~  118 (169)
T KOG3799|consen   63 GDDATCGICHKTKFADG----CGHNCSYCQTRFCARCGGRVSLRSNKVMWVCNLCRKQQE  118 (169)
T ss_pred             CcCcchhhhhhcccccc----cCcccchhhhhHHHhcCCeeeeccCceEEeccCCcHHHH
Confidence            44578999994 44443    89986      46666555444433    3888876553

>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]

Probab=80.38  E-value=0.5  Score=37.86  Aligned_cols=28  Identities=29%  Similarity=0.624  Sum_probs=23.2

Q ss_pred             CCCCcccCHHHHHHHhccC---CCCccccccc
Q 046132          320 PCRHMCMCSGCAKVLRFQT---NRCPICRQPV  348 (361)
Q Consensus       320 PCgH~cfC~~Ca~~l~~qs---~~CPICR~~I  348 (361)
                      -|.|+ |..-|+.+|....   ..||+||+..
T Consensus        50 ~C~h~-fh~hCI~~wl~~~tsq~~CPmcRq~~   80 (84)
T KOG1493|consen   50 YCLHA-FHAHCILKWLNTPTSQGQCPMCRQTW   80 (84)
T ss_pred             HHHHH-HHHHHHHHHhcCccccccCCcchhee
Confidence            49999 9999999987532   5699999865

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	361
2ea5_A	68	Solution Structure Of The Ring Domain Of The Human		1e-05
2vje_A	64	Crystal Structure Of The Mdm2-Mdmx Ring Domain Hete		3e-04
2hdp_A	63	Solution Structure Of Hdm2 Ring Finger Domain Lengt		3e-04

>pdb|2EA5|A Chain A, Solution Structure Of The Ring Domain Of The Human Cell Growth Regulator With Ring Finger Domain 1 Protein Length = 68

Iteration: 1
 Score = 47.4 bits (111), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 6/58 (10%)
Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGPEE 361
           K+CV+C +   +  +LPCRH C+C GC K  +    +CP+CRQ V+      ++GP  
Sbjct: 16  KDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQE--SFALSGPSS 67

>pdb|2VJE|A Chain A, Crystal Structure Of The Mdm2-Mdmx Ring Domain Heterodimer Length = 64

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 306 CVICLSEPRDTTVLPCR--HMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
           CVIC   P++  ++  +  H+  C  CAK L+ +   CP+CRQP++ ++
Sbjct: 11  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 59

>pdb|2HDP|A Chain A, Solution Structure Of Hdm2 Ring Finger Domain Length = 63

Iteration: 1
 Score = 43.1 bits (100), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 17/49 (34%), Positives = 30/49 (61%), Gaps = 2/49 (4%)
Query: 306 CVICLSEPRDTTVLPCR--HMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
           CVIC   P++  ++  +  H+  C  CAK L+ +   CP+CRQP++ ++
Sbjct: 10  CVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIV 58

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	361
2ea5_A	68	Cell growth regulator with ring finger domain prot	1e-23
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	4e-23
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	9e-22
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	2e-18
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	3e-18
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	5e-13
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	9e-10
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	8e-09
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	1e-08
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	2e-08
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	2e-08
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	6e-08
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	8e-08
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	8e-08
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	2e-07
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	4e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	5e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	6e-07
1m2v_B	926	SEC24, protein transport protein SEC24, SEC24P, SE	2e-05
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	6e-07
4epo_C	149	E3 ubiquitin-protein ligase RNF8; coiled-coil, E3	3e-06
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	3e-06
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	3e-06
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	6e-06
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	7e-06
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	8e-06
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	1e-05
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	2e-05
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	2e-05
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	3e-05
2ect_A	78	Ring finger protein 126; metal binding protein, st	4e-05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	4e-05
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	5e-05
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	7e-05
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	8e-05
1z6u_A	150	NP95-like ring finger protein isoform B; structura	8e-05
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	2e-04
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	2e-04
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	3e-04
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	4e-04
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	5e-04
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	8e-04

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 68

 Score = 91.8 bits (228), Expect = 1e-23
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 4/67 (5%)

Query: 290 GNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349
            +   G   + +  K+CV+C +   +  +LPCRH C+C GC K  +    +CP+CRQ V+
Sbjct: 2   SSGSSGVEPSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYFQ----QCPMCRQFVQ 57

Query: 350 RLLEIKV 356
               +  
Sbjct: 58  ESFALSG 64

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B* Length = 63

 Score = 90.3 bits (224), Expect = 4e-23
 Identities = 16/59 (27%), Positives = 31/59 (52%), Gaps = 2/59 (3%)

Query: 298 DANDPGKECVICLSEPRDTTVL--PCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354
           D  +  K C +C   PRD  ++     H+  C  CA+ L+     CPIC++ ++ ++++
Sbjct: 2   DCQNLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKV 60

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A Length = 64

 Score = 86.4 bits (214), Expect = 9e-22
 Identities = 17/57 (29%), Positives = 32/57 (56%), Gaps = 2/57 (3%)

Query: 300 NDPGKECVICLSEPRDTTVLPCR--HMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354
            +  + CVIC   P++  ++  +  H+  C  CAK L+ +   CP+CRQP++ ++  
Sbjct: 5   LNAIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLT 61

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 75

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 4/51 (7%)

Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354
           K C IC+        +PC H+  C  CA+ +     +CP+C   +    +I
Sbjct: 26  KLCKICMDRNIAIVFVPCGHLVTCKQCAEAVD----KCPMCYTVITFKQKI 72

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A Length = 79

 Score = 77.5 bits (191), Expect = 3e-18
 Identities = 17/51 (33%), Positives = 25/51 (49%), Gaps = 4/51 (7%)

Query: 304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354
             C++C  E  ++T  PC H   C  CA  L+     CP+CR  VE +  +
Sbjct: 19  MLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHV 65

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A Length = 345

 Score = 68.5 bits (165), Expect = 5e-13
 Identities = 20/97 (20%), Positives = 40/97 (41%), Gaps = 4/97 (4%)

Query: 258 FEKEKGEYQVRVVKQILWVNGMRYELQEIYGIGNSVDGDVDANDPGKECVICLSEPRDTT 317
             K   +     + + L+V+     +      G S++  +      + C +C+ +     
Sbjct: 250 IFKNSLKEIDSTLYKNLFVDKNMKYIPTEDVSGLSLEEQLRRLQEERTCKVCMDKEVSVV 309

Query: 318 VLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEI 354
            +PC H+ +C  CA  LR    +CPICR  ++  +  
Sbjct: 310 FIPCGHLVVCQECAPSLR----KCPICRGIIKGTVRT 342

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1 Length = 68

 Score = 53.6 bits (129), Expect = 9e-10
 Identities = 19/54 (35%), Positives = 29/54 (53%), Gaps = 4/54 (7%)

Query: 301 DPGKECVICLSEPRD-TTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVERLL 352
              + C ICL +P + +  LPC H   C  C  + +R Q   CP+C+ PVE ++
Sbjct: 3   TVAERCPICLEDPSNYSMALPCLH-AFCYVCITRWIR-QNPTCPLCKVPVESVV 54

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 81

 Score = 51.0 bits (122), Expect = 8e-09
 Identities = 21/66 (31%), Positives = 26/66 (39%), Gaps = 2/66 (3%)

Query: 288 GIGNSVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQP 347
           G   S  G  +   P + C IC    ++  V  CRH   C  CA      T RC IC QP
Sbjct: 1   GSSGSSGGSEEEEIPFR-CFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQP 58

Query: 348 VERLLE 353
              +  
Sbjct: 59  TGGIFN 64

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 70

 Score = 50.5 bits (121), Expect = 1e-08
 Identities = 19/60 (31%), Positives = 25/60 (41%), Gaps = 4/60 (6%)

Query: 292 SVDGDVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVER 350
              G V      +EC IC+ + R   +LPC H   C  C  K    +   CPICR  +  
Sbjct: 4   GSSGRVKQLTDEEECCICM-DGRADLILPCAHS-FCQKCIDKWSD-RHRNCPICRLQMTG 60

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 71

 Score = 49.8 bits (119), Expect = 2e-08
 Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 2/50 (4%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV-ERLLE 353
           EC ICL        LPC+H+  C  C K   +   RC +CRQ + E  L+
Sbjct: 17  ECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPEDFLD 65

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A* Length = 389

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 12/53 (22%), Positives = 20/53 (37%)

Query: 298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
           +     + C IC    +D  + PC H+   S        +   CP CR  ++ 
Sbjct: 327 EMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A Length = 55

 Score = 48.0 bits (115), Expect = 6e-08
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)

Query: 299 ANDPGKECVICLSE----PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
            +     C ICL +         VLPC H  +   C + +  +  RCP+C  P 
Sbjct: 1   GSSGSSGCPICLEDIHTSRVVAHVLPCGH-LLHRTCYEEMLKEGYRCPLCSGPS 53

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 56

 Score = 47.4 bits (113), Expect = 8e-08
 Identities = 17/44 (38%), Positives = 23/44 (52%), Gaps = 4/44 (9%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
            C  C +E +   +LPC H  +CSGC   L     +CPIC+ P 
Sbjct: 8   RCQQCQAEAKCPKLLPCLH-TLCSGC---LEASGMQCPICQAPW 47

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens} Length = 100

 Score = 48.7 bits (116), Expect = 8e-08
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 3/46 (6%)

Query: 305 ECVICLSEPRDTTVLP-CRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
            C IC+ + RD  + P C  +C C  C  + L  Q  +CP CR P+
Sbjct: 24  RCFICMEKLRDARLCPHCSKLC-CFSCIRRWLTEQRAQCPHCRAPL 68

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 74

 Score = 46.7 bits (111), Expect = 2e-07
 Identities = 15/68 (22%), Positives = 29/68 (42%), Gaps = 6/68 (8%)

Query: 290 GNSVDGDVDANDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNR-CPICR 345
            +   G V   +  + C +CL + +      + PC+H      C  +   +  + CP+C 
Sbjct: 2   SSGSSGKVKELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCL-IKWLEVRKVCPLCN 59

Query: 346 QPVERLLE 353
            PV +L +
Sbjct: 60  MPVLQLAQ 67

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens} Length = 124

 Score = 47.3 bits (112), Expect = 4e-07
 Identities = 15/54 (27%), Positives = 23/54 (42%), Gaps = 2/54 (3%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVERLLEIKVN 357
           +C+ C           C+H  +C  C  +  R Q   CP CR  + R   ++VN
Sbjct: 54  QCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGRSYAMQVN 106

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.6 bits (120), Expect = 5e-07
 Identities = 15/106 (14%), Positives = 20/106 (18%)

Query: 22  PPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPP 81
             P    PPQ    A         P     P+               Q            
Sbjct: 24  QQPAQFMPPQDPAAAGMSYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDM 83

Query: 82  PPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQ 127
               +P+  P  +         G P Q +       A   P     
Sbjct: 84  HLHNVPLVDPNAYMQPQVPVQMGTPLQQQQQPMAAPAYGQPSAAMG 129

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 50.2 bits (119), Expect = 6e-07
 Identities = 20/106 (18%), Positives = 28/106 (26%)

Query: 22  PPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPP 81
               P    QQ +T  +          T   N  + +N    +       Q P     P 
Sbjct: 50  QGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQVPVQMGTPL 109

Query: 82  PPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQ 127
                P+  PA        G    P    YP   +   PPP  +  
Sbjct: 110 QQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTELPPPITDLT 155

>1m2v_B SEC24, protein transport protein SEC24, SEC24P, SEC24 protein, abnormal nuclear; zinc-finger, beta barrel, VWA domain, gelsolin domain,; 2.75A {Saccharomyces cerevisiae} SCOP: a.71.2.1 b.2.8.1 c.62.1.2 d.109.2.1 g.41.10.1 Length = 926

 Score = 45.6 bits (107), Expect = 2e-05
 Identities = 14/106 (13%), Positives = 23/106 (21%)

Query: 22  PPPPPPTPPQQEITANRYVFAAVTPYPTQYPNSNNPNNNNNNNNPPPQYYQYPPGGYYPP 81
                  PPQ  + +              +   +    + N+ +        P     P 
Sbjct: 41  SYGQMGMPPQGAVPSMGQQQFLTPAQEQLHQQIDQATTSMNDMHLHNVPLVDPNAYMQPQ 100

Query: 82  PPPAMPVPLPAPFDHHHRGGGGGEPGQWRYPCGPMMAPPPPYVEHQ 127
            P  M  PL            G           PM    P  +  +
Sbjct: 101 VPVQMGTPLQQQQQPMAAPAYGQPSAAMGQNMRPMNQLYPIDLLTE 146

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 66

 Score = 45.5 bits (108), Expect = 6e-07
 Identities = 10/45 (22%), Positives = 17/45 (37%), Gaps = 2/45 (4%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
           +C  C           C H   C  C A +L   + +C  C++ +
Sbjct: 17  KCEKCHLVLCSPKQTECGHRF-CESCMAALLSSSSPKCTACQESI 60

>4epo_C E3 ubiquitin-protein ligase RNF8; coiled-coil, E3 ubiquitin ligase, protein binding complex; 4.80A {Homo sapiens} Length = 149

 Score = 45.4 bits (107), Expect = 3e-06
 Identities = 14/46 (30%), Positives = 21/46 (45%), Gaps = 1/46 (2%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
           +C+IC     +   L C H   CS C      +   CPICR+ ++ 
Sbjct: 66  QCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKS 110

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1 Length = 116

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 19/45 (42%), Gaps = 2/45 (4%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
            C IC     D     C+H+  C  C  + L+   + CP CR P 
Sbjct: 25  SCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPC 68

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, chromosomal protein, DNA repair, metal-binding; 2.12A {Homo sapiens} Length = 115

 Score = 44.5 bits (105), Expect = 3e-06
 Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 2/45 (4%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
           +C IC+    +   LPC H  +C  C    +   +  CP CR+ V
Sbjct: 17  QCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRV 60

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 69

 Score = 42.6 bits (100), Expect = 6e-06
 Identities = 14/56 (25%), Positives = 19/56 (33%), Gaps = 8/56 (14%)

Query: 300 NDPGKECVICLSE-------PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
                 C IC+          R      C H+  CS C +      N CP CR+ +
Sbjct: 12  PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKI 66

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A Length = 118

 Score = 44.0 bits (104), Expect = 7e-06
 Identities = 15/45 (33%), Positives = 22/45 (48%), Gaps = 2/45 (4%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
           EC ICL   R+    PC H   C  C  K +R   ++CP+  + +
Sbjct: 20  ECPICLMALREAVQTPCGH-RFCKACIIKSIRDAGHKCPVDNEIL 63

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus} Length = 71

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 14/58 (24%), Positives = 19/58 (32%), Gaps = 8/58 (13%)

Query: 300 NDPGKECVICLSE-------PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
                 C IC+          R      C H+  CS C +      N CP CR+ +  
Sbjct: 7   PSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 63

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens} Length = 64

 Score = 41.3 bits (97), Expect = 1e-05
 Identities = 14/53 (26%), Positives = 19/53 (35%), Gaps = 8/53 (15%)

Query: 305 ECVICLSE-------PRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
            C IC+          R      C H+  CS C +      N CP CR+ +  
Sbjct: 5   SCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH 56

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 88

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 14/52 (26%), Positives = 20/52 (38%), Gaps = 8/52 (15%)

Query: 305 ECVICLSEPRDTT----VLPCRHMCMCSGCAKVL---RFQTNRCPICRQPVE 349
           EC IC+    +      +L C H  +C  C + L        RCP C +   
Sbjct: 17  ECPICMESFTEEQLRPKLLHCGH-TICRQCLEKLLASSINGVRCPFCSKITR 67

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens} Length = 69

 Score = 41.2 bits (97), Expect = 2e-05
 Identities = 19/64 (29%), Positives = 27/64 (42%), Gaps = 14/64 (21%)

Query: 294 DGDVDANDPGKECVICLSEPRD---TTVLPCRHM--CMCSGCAKV---LRFQTNRCPICR 345
             +    D  ++C ICLS   +      LPC H+   +C     V   L     +CPICR
Sbjct: 5   GEEGTEEDTEEKCTICLSILEEGEDVRRLPCMHLFHQVC-----VDQWLI-TNKKCPICR 58

Query: 346 QPVE 349
             +E
Sbjct: 59  VDIE 62

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens} Length = 170

 Score = 43.2 bits (101), Expect = 3e-05
 Identities = 15/55 (27%), Positives = 23/55 (41%), Gaps = 2/55 (3%)

Query: 297 VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVER 350
               +   EC ICL   R+    PC H   C  C  K +R   ++CP+  + +  
Sbjct: 12  DPPLESKYECPICLMALREAVQTPCGHRF-CKACIIKSIRDAGHKCPVDNEILLE 65

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} Length = 78

 Score = 40.5 bits (95), Expect = 4e-05
 Identities = 16/60 (26%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 294 DGDVDANDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKV-LRFQTNRCPICRQPVE 349
            G  +    G EC +C  +         LPC H+     C    L  Q + CP+CR+ + 
Sbjct: 6   SGTEEHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLE-QHDSCPVCRKSLT 63

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens} Length = 91

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 19/60 (31%), Positives = 24/60 (40%), Gaps = 6/60 (10%)

Query: 293 VDGDVDANDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKV-LRFQTNRCPICRQPV 348
           V  D  A      C IC SE       T LPC H      C  + L+ ++  CP+CR   
Sbjct: 30  VTEDHGAVGQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQ-KSGTCPVCRCMF 87

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 72

 Score = 40.1 bits (94), Expect = 5e-05
 Identities = 16/48 (33%), Positives = 20/48 (41%), Gaps = 4/48 (8%)

Query: 305 ECVICLSEPRD-TTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVER 350
            C IC     D TT+  C H   C  C  +   +  NRCP C   V +
Sbjct: 17  LCSICKGYLIDATTITECLH-TFCKSCIVRHFYYS-NRCPKCNIVVHQ 62

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 75

 Score = 39.6 bits (93), Expect = 7e-05
 Identities = 17/62 (27%), Positives = 22/62 (35%), Gaps = 14/62 (22%)

Query: 296 DVDANDPGKECVICLSE--PRDT-TVLPCRHM--CMCSGCAKV---LRFQTNRCPICRQP 347
             +       CV+C+ +   R    VLPC H     C     V   L+     CPICR  
Sbjct: 16  PNNHQSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKC-----VDKWLKANRT-CPICRAD 69

Query: 348 VE 349
             
Sbjct: 70  SG 71

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B Length = 78

 Score = 39.7 bits (92), Expect = 8e-05
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 7/75 (9%)

Query: 293 VDGDVDANDPGKECVICLSEPRDTT----VLPCRHMCMCSGC-AKVLRFQTNRCPICRQP 347
           +    DA +   EC +C+              C +  +C  C  ++   +   CP CR+P
Sbjct: 1   MSRSPDAKEDPVECPLCMEPLEIDDINFFPCTCGY-QICRFCWHRIRTDENGLCPACRKP 59

Query: 348 V-ERLLEIKVNGPEE 361
             E     K    EE
Sbjct: 60  YPEDPAVYKPLSQEE 74

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens} Length = 150

 Score = 41.5 bits (97), Expect = 8e-05
 Identities = 13/54 (24%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPVERLLEIKVN 357
            CV C           C H  +C  C  +  + Q   CP CR  + +   +  N
Sbjct: 80  MCVCCQELVYQPVTTECFH-NVCKDCLQRSFKAQVFSCPACRHDLGQNYIMIPN 132

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3 Length = 60

 Score = 38.2 bits (89), Expect = 2e-04
 Identities = 11/58 (18%), Positives = 17/58 (29%), Gaps = 14/58 (24%)

Query: 300 NDPGKECVICLSEPRDTTVLPCRHMCMCSG--------CAK--VLRFQTNRCPICRQP 347
           ++    C IC  E  +     C     C+G        C    +   +   C IC   
Sbjct: 3   DEDVPVCWICNEELGNERFRACG----CTGELENVHRSCLSTWLTISRNTACQICGVV 56

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens} Length = 99

 Score = 39.0 bits (91), Expect = 2e-04
 Identities = 13/46 (28%), Positives = 17/46 (36%), Gaps = 2/46 (4%)

Query: 306 CVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
           C IC        ++P C H   CS C +       +CP C   V  
Sbjct: 25  CGICFEYFNIAMIIPQCSHNY-CSLCIRKFLSYKTQCPTCCVTVTE 69

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1 Length = 117

 Score = 39.1 bits (91), Expect = 3e-04
 Identities = 15/53 (28%), Positives = 23/53 (43%), Gaps = 5/53 (9%)

Query: 306 CVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN 357
           C  C +  R+   +  C H   CS C  V       CP+C  P   + ++K+N
Sbjct: 25  CSRCTNILREPVCLGGCEH-IFCSNC--VSDCIGTGCPVCYTPA-WIQDLKIN 73

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1 Length = 55

 Score = 37.2 bits (87), Expect = 4e-04
 Identities = 21/59 (35%), Positives = 25/59 (42%), Gaps = 15/59 (25%)

Query: 299 ANDPGKECVICLSEPRDTT---VLP-CRHM--CMCSGCAKV---LRFQTNRCPICRQPV 348
           A D G EC +CL+E  D      LP C H     C     V   L   +  CP+CR  V
Sbjct: 1   AMDDGVECAVCLAELEDGEEARFLPRCGHGFHAEC-----VDMWLGSHST-CPLCRLTV 53

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A Length = 108

 Score = 38.3 bits (89), Expect = 5e-04
 Identities = 16/46 (34%), Positives = 21/46 (45%), Gaps = 4/46 (8%)

Query: 305 ECVICLSEPRD-TTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
            CV+C     D TT++ C H   C  C  + L   +  CPIC   V
Sbjct: 17  MCVLCGGYFIDATTIIECLHSF-CKTCIVRYLE-TSKYCPICDVQV 60

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 80

 Score = 36.8 bits (85), Expect = 8e-04
 Identities = 17/82 (20%), Positives = 27/82 (32%), Gaps = 18/82 (21%)

Query: 290 GNSVDGDVDANDPGKECVICLSE--PRDTTVLPCRHMCMCSG--------CAK--VLRFQ 337
            +   G          C IC  E       + PC     C+G        C +  +    
Sbjct: 2   SSGSSGTSITPSSQDICRICHCEGDDESPLITPCH----CTGSLHFVHQACLQQWIKSSD 57

Query: 338 TNRCPICRQPVERLLEIKVNGP 359
           T  C +C+      +E K++GP
Sbjct: 58  TRCCELCKYEFI--METKLSGP 77

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	361
2vje_B	63	MDM4 protein; proto-oncogene, phosphorylation, alt	99.5
2ea5_A	68	Cell growth regulator with ring finger domain prot	99.49
2vje_A	64	E3 ubiquitin-protein ligase MDM2; proto-oncogene,	99.48
4ic3_A	74	E3 ubiquitin-protein ligase XIAP; ring domain, zin	99.24
2yho_A	79	E3 ubiquitin-protein ligase mylip; ligase, E2 liga	99.23
2d8t_A	71	Dactylidin, ring finger protein 146; RNF146, ring	99.2
2csy_A	81	Zinc finger protein 183-like 1; ring finger protei	99.19
2ecn_A	70	Ring finger protein 141; RNF141, ring domain, zinc	99.18
2ecg_A	75	Baculoviral IAP repeat-containing protein 4; BIRC4	99.15
2ea6_A	69	Ring finger protein 4; RNF4, RES4-26, ring domain,	99.13
2kiz_A	69	E3 ubiquitin-protein ligase arkadia; ring-H2 finge	99.13
2djb_A	72	Polycomb group ring finger protein 6; PCGF6, ring	99.12
1chc_A	68	Equine herpes virus-1 ring domain; viral protein;	99.12
2ep4_A	74	Ring finger protein 24; zinc binding, ubiquitin, E	99.08
2ysl_A	73	Tripartite motif-containing protein 31; ring-type	99.08
2ect_A	78	Ring finger protein 126; metal binding protein, st	99.07
2xeu_A	64	Ring finger protein 4; transcription, zinc-finger,	99.05
2l0b_A	91	E3 ubiquitin-protein ligase praja-1; zinc finger,	99.05
3ng2_A	71	RNF4, snurf, ring finger protein 4; ring domain, E	99.05
2ecw_A	85	Tripartite motif-containing protein 30; metal bind	99.05
2yur_A	74	Retinoblastoma-binding protein 6; P53-associated c	99.05
2ecm_A	55	Ring finger and CHY zinc finger domain- containing	99.04
2ecy_A	66	TNF receptor-associated factor 3; metal binding pr	99.03
2ct2_A	88	Tripartite motif protein 32; zinc-finger protein H	99.02
1iym_A	55	EL5; ring-H2 finger, ubiquitin ligase, DNA binding	99.02
2ecv_A	85	Tripartite motif-containing protein 5; metal bindi	99.01
1x4j_A	75	Ring finger protein 38; structural genomics, NPPSF	99.0
4ayc_A	138	E3 ubiquitin-protein ligase RNF8; DNA damage, K63	99.0
3ztg_A	92	E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mR	98.98
2egp_A	79	Tripartite motif-containing protein 34; ZF-C3HC4 d	98.98
2ysj_A	63	Tripartite motif-containing protein 31; ring-type	98.92
1t1h_A	78	Gspef-atpub14, armadillo repeat containing protein	98.92
2ecj_A	58	Tripartite motif-containing protein 39; TRIM39, ri	98.91
3t6p_A	345	Baculoviral IAP repeat-containing protein 2; ring,	98.9
2kre_A	100	Ubiquitin conjugation factor E4 B; U-box domain, E	98.86
1v87_A	114	Deltex protein 2; ring-H2 domain, zinc-binding dom	98.85
2y1n_A	389	E3 ubiquitin-protein ligase; ligase-transferase co	98.85
2ckl_A	108	Polycomb group ring finger protein 4; BMI1, RING1B	98.83
3lrq_A	100	E3 ubiquitin-protein ligase TRIM37; structural gen	98.82
3fl2_A	124	E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA	98.81
2ckl_B	165	Ubiquitin ligase protein RING2; BMI1, RING1B, poly	98.81
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.8
2ecl_A	81	Ring-box protein 2; RNF7, ring domian, zinc-bindin	98.8
2y43_A	99	E3 ubiquitin-protein ligase RAD18; DNA repair, met	98.79
1e4u_A	78	Transcriptional repressor NOT4; gene regulation, t	98.79
1g25_A	65	CDK-activating kinase assembly factor MAT1; ring f	98.78
2kr4_A	85	Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ri	98.77
1bor_A	56	Transcription factor PML; proto-oncogene, nuclear	98.76
3l11_A	115	E3 ubiquitin-protein ligase RNF168; E3 ligase, rin	98.76
1jm7_A	112	BRCA1, breast cancer type 1 susceptibility protein	98.75
3hct_A	118	TNF receptor-associated factor 6; cross-brace, bet	98.74
1z6u_A	150	NP95-like ring finger protein isoform B; structura	98.72
1wgm_A	98	Ubiquitin conjugation factor E4A; ubiquitinating e	98.7
4ap4_A	133	E3 ubiquitin ligase RNF4; ligase-signalling protei	98.66
3dpl_R	106	Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST	98.61
1rmd_A	116	RAG1; V(D)J recombination, antibody, MAD, ring fin	98.61
3knv_A	141	TNF receptor-associated factor 2; cross-brace, alt	98.57
1jm7_B	117	BARD1, BRCA1-associated ring domain protein 1; rin	98.45
2c2l_A	281	CHIP, carboxy terminus of HSP70-interacting protei	98.44
3hcs_A	170	TNF receptor-associated factor 6; cross-brace, bet	98.43
2d8s_A	80	Cellular modulator of immune recognition; C-MIR, m	98.43
4a0k_B	117	E3 ubiquitin-protein ligase RBX1; ligase-DNA-bindi	98.32
2yu4_A	94	E3 SUMO-protein ligase NSE2; SP-ring domain, struc	98.26
2f42_A	179	STIP1 homology and U-box containing protein 1; cha	98.17
3vk6_A	101	E3 ubiquitin-protein ligase hakai; HYB, phosphotyr	97.88
3htk_C	267	E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-	97.85
1vyx_A	60	ORF K3, K3RING; zinc-binding protein, ring domain,	97.83
2bay_A	61	PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin l	97.77
1wim_A	94	KIAA0161 protein; ring finger domain, UBCM4-intera	97.75
2ct0_A	74	Non-SMC element 1 homolog; ring domain, structural	97.57
3k1l_B	381	Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A	97.29
2ko5_A	99	Ring finger protein Z; lassa fever virus-Z, negati	95.36
3nw0_A	238	Non-structural maintenance of chromosomes element	91.88
2jun_A	101	Midline-1; B-BOX, TRIM, ring finger, alternative s	90.68
2cs3_A	93	Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, s	80.44

>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*

Probab=99.50  E-value=8.3e-15  Score=110.12  Aligned_cols=55  Identities=27%  Similarity=0.725  Sum_probs=51.0

Q ss_pred             CCCeeeecccCCCCeEEe--CCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          302 PGKECVICLSEPRDTTVL--PCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      ...+|.||++..++++++  ||||++||.+|+..|+.+..+||+||++|..+++|++
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~   62 (63)
T 2vje_B            6 LLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQLVIKVFI   62 (63)
T ss_dssp             GGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCCEEEEEEE
T ss_pred             cCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhhceEEEec
Confidence            456899999999999888  9999999999999998877899999999999999986

>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.4e-14  Score=110.70  Aligned_cols=57  Identities=35%  Similarity=0.948  Sum_probs=50.8

Q ss_pred             CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCC
Q 046132          299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGP  359 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~  359 (361)
                      ..++..+|.||++..++++++||||++||..|+..+    ..||+||+.|...++|+.+++
T Consensus        11 ~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~CR~~i~~~~~i~~~~s   67 (68)
T 2ea5_A           11 SEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKYF----QQCPMCRQFVQESFALSGPSS   67 (68)
T ss_dssp             SCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHHC----SSCTTTCCCCCCEECCCSSCC
T ss_pred             cCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhcC----CCCCCCCcchhceEEeecCCC
Confidence            344568899999999999999999999999999965    589999999999999988764

>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A

Probab=99.48  E-value=1.5e-14  Score=109.05  Aligned_cols=56  Identities=30%  Similarity=0.746  Sum_probs=51.6

Q ss_pred             CCCeeeecccCCCCeEEe--CCCCcccCHHHHHHHhccCCCCccccccccceEEEEcC
Q 046132          302 PGKECVICLSEPRDTTVL--PCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN  357 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlL--PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~  357 (361)
                      ++.+|+||+++.++++++  ||||+++|.+|+..|+.+...||+||+.|..+++|++.
T Consensus         7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~~~i~i~~~   64 (64)
T 2vje_A            7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQMIVLTYFP   64 (64)
T ss_dssp             GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCCEEEEEECC
T ss_pred             CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchhceEeeecC
Confidence            356899999999999988  99999999999999998888999999999999999873

>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A

Probab=99.24  E-value=2.1e-12  Score=99.62  Aligned_cols=51  Identities=27%  Similarity=0.751  Sum_probs=47.3

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      +..+|.||++..++++++||||.+||..|+..|    ..||+||+.|...++|++
T Consensus        23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~   73 (74)
T 4ic3_A           23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKILM   73 (74)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCSEEEECBC
T ss_pred             cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCccCcEEEee
Confidence            346899999999999999999999999999988    589999999999999886

>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A

Probab=99.23  E-value=3e-12  Score=100.41  Aligned_cols=54  Identities=31%  Similarity=0.773  Sum_probs=48.9

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEcCCC
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVNGP  359 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v~~~  359 (361)
                      ++.+|.||++..++++++||||++||..|+..|+    .||+||+.|...++|++..+
T Consensus        17 ~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~~----~CP~Cr~~i~~~~~i~~p~~   70 (79)
T 2yho_A           17 EAMLCMVCCEEEINSTFCPCGHTVCCESCAAQLQ----SCPVCRSRVEHVQHVYLPTH   70 (79)
T ss_dssp             HHTBCTTTSSSBCCEEEETTCBCCBCHHHHTTCS----BCTTTCCBCCEEEECBCTTC
T ss_pred             CCCEeEEeCcccCcEEEECCCCHHHHHHHHHhcC----cCCCCCchhhCeEEEEeCcc
Confidence            3468999999999999999999999999999874    89999999999999987653

>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.20  E-value=1.1e-11  Score=94.25  Aligned_cols=50  Identities=34%  Similarity=0.766  Sum_probs=45.2

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ..+..+|.||++..++.++++|||. ||..|+..|......||+||..|..
T Consensus        12 ~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   61 (71)
T 2d8t_A           12 SLTVPECAICLQTCVHPVSLPCKHV-FCYLCVKGASWLGKRCALCRQEIPE   61 (71)
T ss_dssp             SSSCCBCSSSSSBCSSEEEETTTEE-EEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred             CCCCCCCccCCcccCCCEEccCCCH-HHHHHHHHHHHCCCcCcCcCchhCH
Confidence            4456789999999999999999999 9999999998888899999999864

>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.19  E-value=1.5e-11  Score=95.56  Aligned_cols=54  Identities=31%  Similarity=0.655  Sum_probs=47.3

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL  352 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll  352 (361)
                      ++.+...+|.||++...+.++++|||. ||..|+..|......||+||..+...+
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~~   63 (81)
T 2csy_A           10 EEEEIPFRCFICRQAFQNPVVTKCRHY-FCESCALEHFRATPRCYICDQPTGGIF   63 (81)
T ss_dssp             SCCCCCSBCSSSCSBCCSEEECTTSCE-EEHHHHHHHHHHCSBCSSSCCBCCSCC
T ss_pred             ccCCCCCCCcCCCchhcCeeEccCCCH-hHHHHHHHHHHCCCcCCCcCccccccC
Confidence            344556799999999999999999999 999999999887889999999987543

>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.18  E-value=9.1e-12  Score=93.97  Aligned_cols=57  Identities=30%  Similarity=0.659  Sum_probs=48.9

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      +...+..+|.||++...+ ++++|+|. ||..|+..|......||+||..+.....+++
T Consensus        10 ~~~~~~~~C~IC~~~~~~-~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   66 (70)
T 2ecn_A           10 KQLTDEEECCICMDGRAD-LILPCAHS-FCQKCIDKWSDRHRNCPICRLQMTGANESSG   66 (70)
T ss_dssp             CCCCCCCCCSSSCCSCCS-EEETTTEE-ECHHHHHHSSCCCSSCHHHHHCTTCCCCCCC
T ss_pred             hcCCCCCCCeeCCcCccC-cccCCCCc-ccHHHHHHHHHCcCcCCCcCCcccCCCcccc
Confidence            344556789999999999 89999999 9999999998888899999999987655544

>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.15  E-value=6.3e-12  Score=96.96  Aligned_cols=50  Identities=28%  Similarity=0.761  Sum_probs=45.7

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      ..+|.||++..++++++||||.+||..|+..+    ..||+||..|...++|++
T Consensus        25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~~~~i~~   74 (75)
T 2ecg_A           25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVITFKQKIFM   74 (75)
T ss_dssp             HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHHC----SBCTTTCCBCCCCCBCCC
T ss_pred             CCCCCcCCCCCCCEEEecCCCHHHHHHHhhCC----CCCccCCceecCcEEEec
Confidence            46799999999999999999999999999765    589999999999988876

>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.13  E-value=2.1e-11  Score=91.03  Aligned_cols=51  Identities=25%  Similarity=0.644  Sum_probs=44.2

Q ss_pred             CCCCCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          299 ANDPGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ...+..+|.||++...+.       ++++|||. ||..|+..|......||+||..|..
T Consensus        11 ~~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   68 (69)
T 2ea6_A           11 RPSGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   68 (69)
T ss_dssp             CTTCCCCCTTTCCCHHHHTTTTCCEEECSSSCE-EEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCCCcccCccccccccccCCeEeCCCCCh-hcHHHHHHHHHcCCCCCCCCCccCc
Confidence            345567899999987775       89999999 9999999998888899999998864

>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}

Probab=99.13  E-value=3.7e-11  Score=90.30  Aligned_cols=53  Identities=36%  Similarity=0.780  Sum_probs=44.4

Q ss_pred             CCCCCCeeeecccCC---CCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceE
Q 046132          299 ANDPGKECVICLSEP---RDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL  352 (361)
Q Consensus       299 ~~~~~~eCvICl~~~---~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll  352 (361)
                      +.+...+|.||++..   ...++++|+|. ||..|+..|.....+||+||..|...+
T Consensus        10 ~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~   65 (69)
T 2kiz_A           10 EEDTEEKCTICLSILEEGEDVRRLPCMHL-FHQVCVDQWLITNKKCPICRVDIEAQL   65 (69)
T ss_dssp             STTCCCSBTTTTBCCCSSSCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCSBSCSCC
T ss_pred             cCCCCCCCeeCCccccCCCcEEEeCCCCH-HHHHHHHHHHHcCCCCcCcCccccCcC
Confidence            345567899998765   45688999999 999999999988889999999987643

>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.12  E-value=4e-11  Score=91.28  Aligned_cols=55  Identities=29%  Similarity=0.606  Sum_probs=47.5

Q ss_pred             CCCCCCCCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132          296 DVDANDPGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVERL  351 (361)
Q Consensus       296 ~~~~~~~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l  351 (361)
                      +.++.++..+|.||++...+.+.+ +|||. ||..|+..|......||+||..+...
T Consensus         8 ~~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~~   63 (72)
T 2djb_A            8 NLSELTPYILCSICKGYLIDATTITECLHT-FCKSCIVRHFYYSNRCPKCNIVVHQT   63 (72)
T ss_dssp             CCCCCCGGGSCTTTSSCCSSCEECSSSCCE-ECHHHHHHHHHHCSSCTTTCCCCCSS
T ss_pred             hHhhcCCCCCCCCCChHHHCcCEECCCCCH-HHHHHHHHHHHcCCcCCCcCcccCcc
Confidence            344456678999999999999887 99999 99999999988788999999998653

>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1

Probab=99.12  E-value=2.2e-11  Score=91.16  Aligned_cols=54  Identities=33%  Similarity=0.803  Sum_probs=47.3

Q ss_pred             CCCeeeecccCCCC-eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          302 PGKECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       302 ~~~eCvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      .+.+|.||++...+ .++++|||. ||..|+..|.....+||+||+.+..+++...
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   58 (68)
T 1chc_A            4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVHTIE   58 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEECCCC
T ss_pred             CCCCCeeCCccccCCcEecCCCCe-eHHHHHHHHHhCcCcCcCCChhhHhhhhccc
Confidence            45689999999998 488999999 9999999998888999999999998766543

>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=3.6e-11  Score=91.61  Aligned_cols=58  Identities=22%  Similarity=0.543  Sum_probs=47.7

Q ss_pred             CCCCCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          298 DANDPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      .+.+.+.+|.||++...+   .++++|+|. ||..|+..|......||+||..|..+..+..
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-f~~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~   70 (74)
T 2ep4_A           10 KELNLHELCAVCLEDFKPRDELGICPCKHA-FHRKCLIKWLEVRKVCPLCNMPVLQLAQLSG   70 (74)
T ss_dssp             CCCCCSCBCSSSCCBCCSSSCEEEETTTEE-EEHHHHHHHHHHCSBCTTTCCBCSSCCSCCC
T ss_pred             ccCCCCCCCcCCCcccCCCCcEEEcCCCCE-ecHHHHHHHHHcCCcCCCcCcccccccccCC
Confidence            344556789999997653   556799999 9999999999888899999999988766544

>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.08  E-value=1.2e-10  Score=88.10  Aligned_cols=51  Identities=24%  Similarity=0.599  Sum_probs=44.2

Q ss_pred             CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc---cCCCCccccccccc
Q 046132          299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF---QTNRCPICRQPVER  350 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---qs~~CPICR~~I~~  350 (361)
                      ..++..+|.||++...+.++++|||. ||..|+..|..   ....||+||+.+..
T Consensus        16 ~~~~~~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   69 (73)
T 2ysl_A           16 KLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLCKTSVRK   69 (73)
T ss_dssp             CCCCCCBCTTTCSBCSSEEECTTCCE-EEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred             hCccCCEeccCCcccCCeEEcCCCCh-hhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence            34566899999999999999999999 99999999985   34589999998854

>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}

Probab=99.07  E-value=5.5e-11  Score=91.47  Aligned_cols=53  Identities=26%  Similarity=0.668  Sum_probs=43.9

Q ss_pred             CCCCCCCeeeecccCCC---CeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132          298 DANDPGKECVICLSEPR---DTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL  351 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~---d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l  351 (361)
                      +..+...+|.||++...   ..++++|+|. ||..|+..|.....+||+||..+...
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~   65 (78)
T 2ect_A           10 EHVGSGLECPVCKEDYALGESVRQLPCNHL-FHDSCIVPWLEQHDSCPVCRKSLTGQ   65 (78)
T ss_dssp             TTSSSSCCCTTTTSCCCTTSCEEECTTSCE-EETTTTHHHHTTTCSCTTTCCCCCCS
T ss_pred             ccCCCCCCCeeCCccccCCCCEEEeCCCCe-ecHHHHHHHHHcCCcCcCcCCccCCc
Confidence            34455679999988765   3467899999 99999999998888999999998753

>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}

Probab=99.05  E-value=4.5e-11  Score=87.89  Aligned_cols=52  Identities=27%  Similarity=0.630  Sum_probs=44.5

Q ss_pred             CCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEE
Q 046132          303 GKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIK  355 (361)
Q Consensus       303 ~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~  355 (361)
                      +.+|.||++...+.       ++++|||. ||..|+..|.....+||+||+.+..  +.+|+
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~   63 (64)
T 2xeu_A            3 MVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIY   63 (64)
T ss_dssp             CCBCTTTCCBHHHHHHTTCCEEEETTSCE-EEHHHHHHHHHHCSBCTTTCCBCTTTCEEECC
T ss_pred             CCCCCccChhhhCccccCCCEEeCCCCCc-hhHHHHHHHHHcCCCCCCCCccCCccceeeee
Confidence            46899999987765       88999999 9999999998888899999999874  45544

>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}

Probab=99.05  E-value=1e-10  Score=93.33  Aligned_cols=49  Identities=31%  Similarity=0.639  Sum_probs=43.2

Q ss_pred             CCCCeeeecccCCCC---eEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d---~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +++..|.||++...+   .+.++|+|. ||..|+..|......||+||..+..
T Consensus        38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-Fh~~Ci~~wl~~~~~CP~Cr~~~~~   89 (91)
T 2l0b_A           38 GQEMCCPICCSEYVKGDVATELPCHHY-FHKPCVSIWLQKSGTCPVCRCMFPP   89 (91)
T ss_dssp             SSCSEETTTTEECCTTCEEEEETTTEE-EEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred             CCCCCCcccChhhcCCCcEEecCCCCh-HHHHHHHHHHHcCCcCcCcCccCCC
Confidence            345789999988776   788999999 9999999999888899999998864

>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}

Probab=99.05  E-value=2.8e-11  Score=91.12  Aligned_cols=49  Identities=27%  Similarity=0.680  Sum_probs=43.3

Q ss_pred             CCCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +++.+|.||++...+.       ++++|||. ||..|+..|.....+||+||..+..
T Consensus         8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~   63 (71)
T 3ng2_A            8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINH   63 (71)
T ss_dssp             TTCCBCTTTCCBHHHHHTTTCCEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCC
T ss_pred             CCCCCCcccChhhhccccccCCeEeCCCCCh-HhHHHHHHHHHcCCCCCCCCCccCh
Confidence            3457899999987776       89999999 9999999999888999999999864

>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.05  E-value=1.7e-10  Score=89.11  Aligned_cols=52  Identities=25%  Similarity=0.628  Sum_probs=45.2

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc------CCCCccccccccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ------TNRCPICRQPVER  350 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q------s~~CPICR~~I~~  350 (361)
                      +..++..+|.||++...+.++++|||. ||..|+..|...      ...||+||..+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecw_A           14 EMIKEEVTCPICLELLKEPVSADCNHS-FCRACITLNYESNRNTDGKGNCPVCRVPYPF   71 (85)
T ss_dssp             CCCCTTTSCTTTCSCCSSCEECTTSCC-BCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred             HhCccCCCCcCCChhhCcceeCCCCCH-HHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence            334556789999999999999999999 999999998776      5789999999864

>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}

Probab=99.05  E-value=4.1e-11  Score=91.90  Aligned_cols=53  Identities=26%  Similarity=0.617  Sum_probs=45.2

Q ss_pred             CCCCCCCCeeeecccCCCCeEEeC-CCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132          297 VDANDPGKECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQT--NRCPICRQPVER  350 (361)
Q Consensus       297 ~~~~~~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~  350 (361)
                      .+...+...|.||++...+.++++ |||. ||..|+..|....  ..||+||+.+..
T Consensus         9 ~~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~~   64 (74)
T 2yur_A            9 DDPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDVS   64 (74)
T ss_dssp             CCCSCGGGSCSSSCCCCTTCEECSSSCCE-ECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred             cccCCCCCCCcCCChHHhCCeEcCCCCCH-HHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence            344556789999999999999999 9999 9999999998754  689999997543

>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A

Probab=99.04  E-value=8.1e-11  Score=84.37  Aligned_cols=48  Identities=31%  Similarity=0.769  Sum_probs=42.1

Q ss_pred             CCCeeeecccCCCC----eEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          302 PGKECVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ++.+|.||++...+    .++++|+|. ||..|+..|.....+||+||+.+.+
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~g   55 (55)
T 2ecm_A            4 GSSGCPICLEDIHTSRVVAHVLPCGHL-LHRTCYEEMLKEGYRCPLCSGPSSG   55 (55)
T ss_dssp             CCCSCTTTCCCCCTTTSCEEECTTSCE-EETTHHHHHHHHTCCCTTSCCSSCC
T ss_pred             CCCcCcccChhhcCCCcCeEecCCCCc-ccHHHHHHHHHcCCcCCCCCCcCCC
Confidence            35689999998765    789999999 9999999998888999999998753

>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.03  E-value=1.5e-10  Score=86.51  Aligned_cols=51  Identities=18%  Similarity=0.496  Sum_probs=44.2

Q ss_pred             CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132          299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVER  350 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~  350 (361)
                      ..++..+|.||++..++.++++|||. ||..|+..|.. ....||+||+.+..
T Consensus        11 ~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (66)
T 2ecy_A           11 TVEDKYKCEKCHLVLCSPKQTECGHR-FCESCMAALLSSSSPKCTACQESIVK   62 (66)
T ss_dssp             SCCCCEECTTTCCEESSCCCCSSSCC-CCHHHHHHHHTTSSCCCTTTCCCCCT
T ss_pred             cCCcCCCCCCCChHhcCeeECCCCCH-HHHHHHHHHHHhCcCCCCCCCcCCCh
Confidence            34556899999999999999999999 99999999984 45789999998864

>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.02  E-value=1.9e-10  Score=89.86  Aligned_cols=51  Identities=31%  Similarity=0.696  Sum_probs=44.1

Q ss_pred             CCCCCCCeeeecccCCCC----eEEeCCCCcccCHHHHHHHhccC---CCCcccccccc
Q 046132          298 DANDPGKECVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVE  349 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~  349 (361)
                      +..++..+|.||++...+    .++++|||. ||..|+..|....   ..||+||..+.
T Consensus        10 ~~~~~~~~C~IC~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   67 (88)
T 2ct2_A           10 DALREVLECPICMESFTEEQLRPKLLHCGHT-ICRQCLEKLLASSINGVRCPFCSKITR   67 (88)
T ss_dssp             CCCCSCCBCTTTCCBCCTTSSCEEECSSSCE-EEHHHHHHHHHHCSSCBCCTTTCCCBC
T ss_pred             hhccCCCCCccCCccccccCCCeEECCCCCh-hhHHHHHHHHHcCCCCcCCCCCCCccc
Confidence            344566889999999998    999999999 9999999998765   78999999874

>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1

Probab=99.02  E-value=1.3e-10  Score=83.46  Aligned_cols=48  Identities=38%  Similarity=0.834  Sum_probs=41.9

Q ss_pred             CCCCeeeecccCCCC---eEEeC-CCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          301 DPGKECVICLSEPRD---TTVLP-CRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~d---~vlLP-CgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      +++.+|.||++...+   .+.++ |+|. ||..|+..|.....+||+||+.+.
T Consensus         3 ~~~~~C~IC~~~~~~~~~~~~~~~C~H~-f~~~Ci~~w~~~~~~CP~Cr~~~~   54 (55)
T 1iym_A            3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTVV   54 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred             CCCCcCccCCccccCCCceEECCCCCCc-ccHHHHHHHHHcCCcCcCCCCEeE
Confidence            345789999998877   77887 9999 999999999988899999999763

>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.01  E-value=1.6e-10  Score=89.22  Aligned_cols=52  Identities=25%  Similarity=0.581  Sum_probs=45.2

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc------CCCCccccccccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ------TNRCPICRQPVER  350 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q------s~~CPICR~~I~~  350 (361)
                      +..++..+|.||++...+.++++|||. ||..|+..|...      ...||+||..+..
T Consensus        14 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~   71 (85)
T 2ecv_A           14 VNVKEEVTCPICLELLTQPLSLDCGHS-FCQACLTANHKKSMLDKGESSCPVCRISYQP   71 (85)
T ss_dssp             CCCCCCCCCTTTCSCCSSCBCCSSSCC-BCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred             HHccCCCCCCCCCcccCCceeCCCCCH-HHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence            344566899999999999999999999 999999998766      6789999998864

>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.00  E-value=1.2e-10  Score=89.24  Aligned_cols=49  Identities=29%  Similarity=0.677  Sum_probs=42.2

Q ss_pred             CCCCeeeecccCCCCe---EEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDT---TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~---vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +++.+|.||++...+.   ++++|+|. ||..|+..|......||+||+.+..
T Consensus        21 ~~~~~C~IC~~~~~~~~~~~~l~C~H~-fh~~Ci~~w~~~~~~CP~Cr~~~~~   72 (75)
T 1x4j_A           21 SEQTLCVVCMCDFESRQLLRVLPCNHE-FHAKCVDKWLKANRTCPICRADSGP   72 (75)
T ss_dssp             SSCCEETTTTEECCBTCEEEEETTTEE-EETTHHHHHHHHCSSCTTTCCCCCC
T ss_pred             CCCCCCeECCcccCCCCeEEEECCCCH-hHHHHHHHHHHcCCcCcCcCCcCCC
Confidence            3457899999876654   78999999 9999999999888899999998864

>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C

Probab=99.00  E-value=2e-10  Score=98.22  Aligned_cols=48  Identities=29%  Similarity=0.670  Sum_probs=44.2

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccce
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERL  351 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~l  351 (361)
                      +..|.||++...++++++|||. ||..|+..|......||+||..|...
T Consensus        53 ~~~C~iC~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~  100 (138)
T 4ayc_A           53 ELQCIICSEYFIEAVTLNCAHS-FCSYCINEWMKRKIECPICRKDIKSK  100 (138)
T ss_dssp             HSBCTTTCSBCSSEEEETTSCE-EEHHHHHHHTTTCSBCTTTCCBCCCE
T ss_pred             cCCCcccCcccCCceECCCCCC-ccHHHHHHHHHcCCcCCCCCCcCCCC
Confidence            3579999999999999999998 99999999998889999999999764

>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}

Probab=98.98  E-value=2.5e-10  Score=90.40  Aligned_cols=51  Identities=27%  Similarity=0.662  Sum_probs=43.9

Q ss_pred             CCCCCCCeeeecccCCCCeEEeC-CCCcccCHHHHHHHhccC--CCCcccccccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQT--NRCPICRQPVE  349 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs--~~CPICR~~I~  349 (361)
                      +...+...|.||++...++++++ |||. ||..|+..|+...  ..||+||..+.
T Consensus         8 ~~~~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~~CP~Cr~~~~   61 (92)
T 3ztg_A            8 DPIPDELLCLICKDIMTDAVVIPCCGNS-YCDECIRTALLESDEHTCPTCHQNDV   61 (92)
T ss_dssp             CCCCTTTEETTTTEECSSCEECTTTCCE-ECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred             ccCCcCCCCCCCChhhcCceECCCCCCH-HHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence            34456789999999999999999 9999 9999999987543  58999999873

>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}

Probab=98.98  E-value=1.3e-10  Score=89.08  Aligned_cols=51  Identities=25%  Similarity=0.599  Sum_probs=44.2

Q ss_pred             CCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-------CCCCccccccccc
Q 046132          299 ANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-------TNRCPICRQPVER  350 (361)
Q Consensus       299 ~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-------s~~CPICR~~I~~  350 (361)
                      ..++..+|.||++...+.++++|||. ||..|+..|...       ...||+||..+..
T Consensus         8 ~~~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~   65 (79)
T 2egp_A            8 NVQEEVTCPICLELLTEPLSLDCGHS-LCRACITVSNKEAVTSMGGKSSCPVCGISYSF   65 (79)
T ss_dssp             CCCCCCEETTTTEECSSCCCCSSSCC-CCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred             hcccCCCCcCCCcccCCeeECCCCCH-HHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence            34556899999999999999999999 999999998765       5689999998853

>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.92  E-value=1.3e-09  Score=80.48  Aligned_cols=46  Identities=24%  Similarity=0.610  Sum_probs=40.0

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc---cCCCCccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF---QTNRCPIC  344 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---qs~~CPIC  344 (361)
                      +..++..+|.||++...+.++++|||. ||..|+..|..   ...+||+|
T Consensus        15 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   63 (63)
T 2ysj_A           15 NKLQEEVICPICLDILQKPVTIDCGHN-FCLKCITQIGETSCGFFKCPLC   63 (63)
T ss_dssp             CCCCCCCBCTTTCSBCSSCEECTTSSE-ECHHHHHHHHHHCSSCCCCSCC
T ss_pred             HhCccCCCCCcCCchhCCeEEeCCCCc-chHHHHHHHHHcCCCCCcCcCC
Confidence            344567899999999999999999999 99999999986   34689998

>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2

Probab=98.92  E-value=7e-10  Score=85.19  Aligned_cols=50  Identities=12%  Similarity=0.151  Sum_probs=44.6

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      ..+...|.||++...+.++++|||. ||..|+..|... ..+||+||..+..
T Consensus         5 ~~~~~~C~IC~~~~~~Pv~~~CgH~-fc~~Ci~~~~~~~~~~CP~C~~~~~~   55 (78)
T 1t1h_A            5 FPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CcccCCCCCccccccCCEEcCCCCe-ecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence            3456789999999999999999999 999999999876 6789999999864

>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.91  E-value=1e-09  Score=79.26  Aligned_cols=46  Identities=22%  Similarity=0.685  Sum_probs=39.4

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc---cCCCCccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF---QTNRCPIC  344 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~---qs~~CPIC  344 (361)
                      +..++...|.||++..++.++++|||. ||..|+..|..   ....||+|
T Consensus        10 ~~~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~C   58 (58)
T 2ecj_A           10 ENLQVEASCSVCLEYLKEPVIIECGHN-FCKACITRWWEDLERDFPCPVC   58 (58)
T ss_dssp             SCSCCCCBCSSSCCBCSSCCCCSSCCC-CCHHHHHHHTTSSCCSCCCSCC
T ss_pred             hccccCCCCccCCcccCccEeCCCCCc-cCHHHHHHHHHhcCCCCCCCCC
Confidence            344566789999999999999999999 99999999943   45789998

>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B

Probab=98.90  E-value=2e-10  Score=113.02  Aligned_cols=52  Identities=27%  Similarity=0.823  Sum_probs=47.1

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccceEEEEc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~I~v  356 (361)
                      ++...|.||++...+++++||||.|||..|+..|    ..||+||..|...++|++
T Consensus       293 ~~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~~~~~i~~  344 (345)
T 3t6p_A          293 QEERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIKGTVRTFL  344 (345)
T ss_dssp             HTTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCCEEEECC-
T ss_pred             cCCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCccCeEEeec
Confidence            3457899999999999999999999999999987    589999999999999876

>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B

Probab=98.86  E-value=1.9e-09  Score=88.08  Aligned_cols=54  Identities=15%  Similarity=0.068  Sum_probs=47.3

Q ss_pred             CCCCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          296 DVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       296 ~~~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +..+..+...|.||++-.+|+|+++|||. ||..|+..|+....+||+||.++..
T Consensus        22 ~~~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   75 (100)
T 2kre_A           22 DYSDAPDEFRDPLMDTLMTDPVRLPSGTI-MDRSIILRHLLNSPTDPFNRQTLTE   75 (100)
T ss_dssp             SCSSCSTTTBCTTTCSBCSSEEEETTTEE-EEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred             hhccCcHhhCCcCccCcccCCeECCCCCE-EchHHHHHHHHcCCCCCCCCCCCCh
Confidence            33445567899999999999999999999 9999999998877899999998864

>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1

Probab=98.85  E-value=1.2e-09  Score=89.66  Aligned_cols=48  Identities=19%  Similarity=0.497  Sum_probs=39.2

Q ss_pred             CCeeeecccCCCCe------------------EEeCCCCcccCHHHHHHHh-----ccCCCCccccccccce
Q 046132          303 GKECVICLSEPRDT------------------TVLPCRHMCMCSGCAKVLR-----FQTNRCPICRQPVERL  351 (361)
Q Consensus       303 ~~eCvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~-----~qs~~CPICR~~I~~l  351 (361)
                      +.+|.||++...+.                  .+++|+|. ||..|+..|.     .....||+||+.+...
T Consensus        25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~-Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~   95 (114)
T 1v87_A           25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK   95 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred             CCcCccCChhhcCcccccccccccccCcccceecCCCCCc-ccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence            35899999987543                  38899999 9999999998     3457899999988643

>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*

Probab=98.85  E-value=1.2e-09  Score=108.93  Aligned_cols=54  Identities=30%  Similarity=0.722  Sum_probs=48.7

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccceEEEEcC
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVERLLEIKVN  357 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ll~I~v~  357 (361)
                      ..+|.||++...++++++|||. ||..|+..|.. ....||+||+.+.....|.++
T Consensus       332 ~~~C~ICle~~~~pv~lpCGH~-FC~~Ci~~wl~~~~~~CP~CR~~i~~~~~i~v~  386 (389)
T 2y1n_A          332 FQLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVVD  386 (389)
T ss_dssp             SSBCTTTSSSBCCEEEETTCCE-ECHHHHHHHHHHTCSBCTTTCCBCCEEEECSCC
T ss_pred             CCCCCccCcCCCCeEEeCCCCh-hhHHHHHHHHhcCCCCCCCCCCccCCceeEecC
Confidence            4689999999999999999999 89999999987 568899999999988777664

>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A

Probab=98.83  E-value=1.5e-09  Score=88.67  Aligned_cols=48  Identities=31%  Similarity=0.660  Sum_probs=44.0

Q ss_pred             CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +...|.||++...+.+.+ +|||. ||..|+..|......||+||..+..
T Consensus        14 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   62 (108)
T 2ckl_A           14 PHLMCVLCGGYFIDATTIIECLHS-FCKTCIVRYLETSKYCPICDVQVHK   62 (108)
T ss_dssp             GGTBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred             CcCCCccCChHHhCcCEeCCCCCh-hhHHHHHHHHHhCCcCcCCCccccc
Confidence            457899999999999998 99999 9999999999888899999999874

>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}

Probab=98.82  E-value=1.3e-09  Score=88.31  Aligned_cols=48  Identities=27%  Similarity=0.725  Sum_probs=43.1

Q ss_pred             CCCeeeecccCCCCeEE-eCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTV-LPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~  350 (361)
                      +...|.||++...+.++ ++|||. ||..|+..|+... ..||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (100)
T 3lrq_A           21 EVFRCFICMEKLRDARLCPHCSKL-CCFSCIRRWLTEQRAQCPHCRAPLQL   70 (100)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCccCCccccCccccCCCCCh-hhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence            45789999999999999 999999 9999999998877 689999999853

>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}

Probab=98.81  E-value=1.3e-09  Score=91.24  Aligned_cols=48  Identities=23%  Similarity=0.510  Sum_probs=42.5

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~  350 (361)
                      +...|.||++...++++++|||. ||..|+..|+... ..||+||..+..
T Consensus        51 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   99 (124)
T 3fl2_A           51 ETFQCICCQELVFRPITTVCQHN-VCKDCLDRSFRAQVFSCPACRYDLGR   99 (124)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred             cCCCCCcCChHHcCcEEeeCCCc-ccHHHHHHHHhHCcCCCCCCCccCCC
Confidence            34689999999999999999999 9999999987644 489999999965

>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B

Probab=98.81  E-value=7.9e-10  Score=96.90  Aligned_cols=49  Identities=27%  Similarity=0.636  Sum_probs=42.9

Q ss_pred             CCCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      .+...|.||++...+.+.+ +|||. ||..|+..|... ...||+||..+..
T Consensus        52 ~~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~  102 (165)
T 2ckl_B           52 HSELMCPICLDMLKNTMTTKECLHR-FCADCIITALRSGNKECPTCRKKLVS  102 (165)
T ss_dssp             HHHHBCTTTSSBCSSEEEETTTCCE-EEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred             CCCCCCcccChHhhCcCEeCCCCCh-hHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence            3456899999999999887 99999 999999999876 6789999999853

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.80  E-value=1.8e-09  Score=89.79  Aligned_cols=56  Identities=25%  Similarity=0.613  Sum_probs=47.6

Q ss_pred             CCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEEcCC
Q 046132          302 PGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIKVNG  358 (361)
Q Consensus       302 ~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~v~~  358 (361)
                      +..+|.||++...+.       ++++|||. ||..|+..|.....+||+||+.+..  +..++++.
T Consensus         6 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~l~~l~i~~   70 (133)
T 4ap4_A            6 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYIGS   70 (133)
T ss_dssp             CSCBCTTTCCBHHHHHHTTCCEEEETTCCE-EEHHHHHHHHTTCSBCTTTCCBCTTTCEEECBCSS
T ss_pred             CCCCCcccChhhhCccccccCeEecCCCCh-hhHHHHHHHHHhCCCCCCCCCcCccccccccccCC
Confidence            457899999988776       99999999 9999999999888899999999974  45565554

>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.80  E-value=2.7e-09  Score=83.41  Aligned_cols=48  Identities=31%  Similarity=0.634  Sum_probs=39.0

Q ss_pred             CCCeeeecccCCCC--------------eEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          302 PGKECVICLSEPRD--------------TTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d--------------~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ++..|.||++...+              .+++ +|+|. ||..|+..|..++.+||+||+.+..
T Consensus        14 ~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~~   76 (81)
T 2ecl_A           14 ECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHS-FHNCCMSLWVKQNNRCPLCQQDWVV   76 (81)
T ss_dssp             CCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCE-EEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred             CCCCCcccChhhhccCcccccccCCCceEEEeCCCCCc-cChHHHHHHHHhCCCCCCcCCCcch
Confidence            34568888887755              4445 59999 9999999999888999999998753

>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}

Probab=98.79  E-value=2.5e-09  Score=86.00  Aligned_cols=48  Identities=25%  Similarity=0.544  Sum_probs=43.5

Q ss_pred             CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +...|.||++...+.+++ +|||. ||..|+..|......||+||..+..
T Consensus        21 ~~~~C~IC~~~~~~p~~~~~CgH~-fC~~Ci~~~~~~~~~CP~Cr~~~~~   69 (99)
T 2y43_A           21 DLLRCGICFEYFNIAMIIPQCSHN-YCSLCIRKFLSYKTQCPTCCVTVTE   69 (99)
T ss_dssp             HHTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred             CCCCcccCChhhCCcCEECCCCCH-hhHHHHHHHHHCCCCCCCCCCcCCh
Confidence            356899999999999888 89999 9999999999888899999998864

>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B

Probab=98.79  E-value=2.1e-09  Score=84.08  Aligned_cols=51  Identities=27%  Similarity=0.699  Sum_probs=40.9

Q ss_pred             CCCCCeeeecccCC--CCeEEeC--CCCcccCHHHHHHHhcc-CCCCccccccccce
Q 046132          300 NDPGKECVICLSEP--RDTTVLP--CRHMCMCSGCAKVLRFQ-TNRCPICRQPVERL  351 (361)
Q Consensus       300 ~~~~~eCvICl~~~--~d~vlLP--CgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~l  351 (361)
                      .+++.+|.||++..  .+.+++|  |||. ||..|+..++.. ...||+||..+...
T Consensus         8 ~~~~~~CpICle~~~~~d~~~~p~~CGH~-fC~~Cl~~~~~~~~~~CP~CR~~~~~~   63 (78)
T 1e4u_A            8 KEDPVECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPED   63 (78)
T ss_dssp             CCCCCBCTTTCCBCCTTTTTCCSSTTSCC-CCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred             cccCCcCCccCccCccccccccccCCCCC-cCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence            34567899999976  4566776  9999 999999997643 46799999999764

>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.78  E-value=2.2e-09  Score=79.86  Aligned_cols=47  Identities=28%  Similarity=0.779  Sum_probs=38.2

Q ss_pred             CCeeeeccc-CCCCe----EEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          303 GKECVICLS-EPRDT----TVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~-~~~d~----vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      +..|.||++ ...+.    ++++|||. ||..|+..|..+ ...||+||..+..
T Consensus         3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   55 (65)
T 1g25_A            3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCcCCcCCCCccCCCccCeecCCCCCH-hHHHHHHHHHHcCCCcCCCCCCcccc
Confidence            467999999 44444    57899999 999999998544 4679999999864

>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}

Probab=98.77  E-value=5.4e-09  Score=82.67  Aligned_cols=52  Identities=13%  Similarity=0.025  Sum_probs=46.3

Q ss_pred             CCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          298 DANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       298 ~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ....+...|.||++-.+|+++++|||. ||..|+..|+....+||+||.++..
T Consensus         9 ~~~p~~~~CpI~~~~m~dPV~~~cGht-f~r~~I~~~l~~~~~cP~~~~~l~~   60 (85)
T 2kr4_A            9 SDAPDEFRDPLMDTLMTDPVRLPSGTV-MDRSIILRHLLNSPTDPFNRQMLTE   60 (85)
T ss_dssp             TTCCTTTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             hcCchheECcccCchhcCCeECCCCCE-ECHHHHHHHHhcCCCCCCCcCCCCh
Confidence            344567899999999999999999999 9999999998877899999998864

>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.76  E-value=7.7e-10  Score=80.68  Aligned_cols=45  Identities=36%  Similarity=0.817  Sum_probs=39.5

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      ++...|.||++...+.++++|||. ||..|+..|   ...||+||+.+.
T Consensus         4 ~~~~~C~IC~~~~~~p~~l~CgH~-fC~~Ci~~~---~~~CP~Cr~~~~   48 (56)
T 1bor_A            4 FQFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWP   48 (56)
T ss_dssp             CCCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSS
T ss_pred             ccCCCceEeCCccCCeEEcCCCCc-ccHHHHccC---CCCCCcCCcEee
Confidence            455789999999999999999999 999998763   468999999875

>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}

Probab=98.76  E-value=9.8e-10  Score=90.68  Aligned_cols=49  Identities=29%  Similarity=0.675  Sum_probs=42.9

Q ss_pred             CCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      .++..|.||++...++++++|||. ||..|+..|... ...||+||..+..
T Consensus        13 ~~~~~C~iC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   62 (115)
T 3l11_A           13 LSECQCGICMEILVEPVTLPCNHT-LCKPCFQSTVEKASLCCPFCRRRVSS   62 (115)
T ss_dssp             HHHHBCTTTCSBCSSCEECTTSCE-ECHHHHCCCCCTTTSBCTTTCCBCHH
T ss_pred             CCCCCCccCCcccCceeEcCCCCH-HhHHHHHHHHhHCcCCCCCCCcccCc
Confidence            345789999999999999999999 999999998765 5689999998863

>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.75  E-value=2.6e-09  Score=87.08  Aligned_cols=47  Identities=30%  Similarity=0.738  Sum_probs=41.7

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC---CCCccccccccc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~~  350 (361)
                      ...|.||++...+.++++|||. ||..|+..|....   ..||+||..+..
T Consensus        21 ~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~   70 (112)
T 1jm7_A           21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDITK   70 (112)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred             CCCCcccChhhcCeEECCCCCH-HHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence            4679999999999999999999 9999999998754   389999998864

>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A

Probab=98.74  E-value=3.2e-09  Score=88.28  Aligned_cols=50  Identities=26%  Similarity=0.593  Sum_probs=44.1

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCC-CCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~-~CPICR~~I~~  350 (361)
                      .++...|.||++...+.++++|||. ||..|+..|..... +||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (118)
T 3hct_A           15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (118)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCcCChhhcCeEECCcCCh-hhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence            3456789999999999999999999 99999999877654 89999999865

>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}

Probab=98.72  E-value=5e-09  Score=91.28  Aligned_cols=49  Identities=22%  Similarity=0.478  Sum_probs=43.1

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCC-CCccccccccce
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPVERL  351 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~-~CPICR~~I~~l  351 (361)
                      +...|.||++...+.++++|||. ||..|+..|..... .||+||..+...
T Consensus        77 ~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~~  126 (150)
T 1z6u_A           77 QSFMCVCCQELVYQPVTTECFHN-VCKDCLQRSFKAQVFSCPACRHDLGQN  126 (150)
T ss_dssp             HHTBCTTTSSBCSSEEECTTSCE-EEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred             cCCEeecCChhhcCCEEcCCCCc-hhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence            34689999999999999999999 99999999887654 799999998753

>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2

Probab=98.70  E-value=1.5e-08  Score=82.44  Aligned_cols=50  Identities=16%  Similarity=0.040  Sum_probs=45.2

Q ss_pred             CCCCCeeeecccCCCCeEEeCCC-CcccCHHHHHHHhccCCCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCR-HMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCg-H~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ..+...|.||++-.+|+|+++|| |. ||..|+..|+....+||+||.++..
T Consensus        19 ~p~~~~CpI~~~~m~dPV~~~cG~ht-f~r~cI~~~l~~~~~cP~~~~~l~~   69 (98)
T 1wgm_A           19 ACDEFLDPIMSTLMCDPVVLPSSRVT-VDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CCTTTBCTTTCSBCSSEEECTTTCCE-EEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             CcHhcCCcCccccccCCeECCCCCeE-ECHHHHHHHHHhCCCCCCCCCCCCh
Confidence            34568999999999999999999 99 9999999998877889999998864

>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}

Probab=98.66  E-value=6.7e-09  Score=86.24  Aligned_cols=54  Identities=26%  Similarity=0.631  Sum_probs=45.7

Q ss_pred             CCCeeeecccCCCCe-------EEeCCCCcccCHHHHHHHhccCCCCccccccccc--eEEEEc
Q 046132          302 PGKECVICLSEPRDT-------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIKV  356 (361)
Q Consensus       302 ~~~eCvICl~~~~d~-------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~v  356 (361)
                      +..+|.||++...+.       ++++|||. ||..|+..|......||+||..+..  +.+|++
T Consensus        71 ~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~-fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~~~~~~  133 (133)
T 4ap4_A           71 GTVSCPICMDGYSEIVQNGRLIVSTECGHV-FCSQCLRDSLKNANTCPTCRKKINHKRYHPIYI  133 (133)
T ss_dssp             SSCBCTTTCCBHHHHHHTTCCEEEETTSBE-EEHHHHHHHHHHCSBCTTTCCBCCGGGEEEECC
T ss_pred             CCCCCCCCCCccccccccCcceEeCCCCCh-hhHHHHHHHHHcCCCCCCCCCcCChhcceeeeC
Confidence            456899999987664       89999999 9999999999888999999999864  556553

>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A

Probab=98.61  E-value=2.3e-08  Score=82.59  Aligned_cols=45  Identities=22%  Similarity=0.409  Sum_probs=37.9

Q ss_pred             CeeeecccCCCC------------------eEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          304 KECVICLSEPRD------------------TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       304 ~eCvICl~~~~d------------------~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      ..|.||++...+                  .++++|+|. ||..|+..|.....+||+||+.+.
T Consensus        38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~Cr~~~~  100 (106)
T 3dpl_R           38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  100 (106)
T ss_dssp             CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             CCCccCChhHhCcCchhhccccccCCccceEeecccCcE-ECHHHHHHHHHcCCcCcCCCCcce
Confidence            468888876553                  367899999 999999999988899999999863

>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1

Probab=98.61  E-value=1.6e-08  Score=83.52  Aligned_cols=48  Identities=27%  Similarity=0.548  Sum_probs=43.0

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      +...|.||++...+++.++|||. ||..|+..|... ...||+||..+..
T Consensus        22 ~~~~C~IC~~~~~~p~~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   70 (116)
T 1rmd_A           22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (116)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCcHhcCcEEcCCCCc-ccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence            35689999999999999999999 999999998876 5789999999864

>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}

Probab=98.57  E-value=1.3e-08  Score=87.93  Aligned_cols=48  Identities=21%  Similarity=0.385  Sum_probs=42.4

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCC-CCccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTN-RCPICRQPV  348 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~-~CPICR~~I  348 (361)
                      .++...|.||++..++.+.++|||. ||..|+..|+.... .||+||.++
T Consensus        28 l~~~~~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~~~   76 (141)
T 3knv_A           28 LEAKYLCSACRNVLRRPFQAQCGHR-YCSFCLASILSSGPQNCAACVHEG   76 (141)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHGGGSCEECHHHHHTT
T ss_pred             CCcCcCCCCCChhhcCcEECCCCCc-cCHHHHHHHHhcCCCCCCCCCCcc
Confidence            3456789999999999999999999 99999999986554 899999975

>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=98.45  E-value=2.3e-08  Score=82.91  Aligned_cols=45  Identities=29%  Similarity=0.652  Sum_probs=40.6

Q ss_pred             CCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          302 PGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      +...|.||++...+++++ +|||. ||..|+..|..  ..||+||..+.
T Consensus        21 ~~~~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~~--~~CP~Cr~~~~   66 (117)
T 1jm7_B           21 KLLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCIG--TGCPVCYTPAW   66 (117)
T ss_dssp             HTTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGTT--TBCSSSCCBCS
T ss_pred             hCCCCCCCChHhhCccEeCCCCCH-HHHHHHHHHhc--CCCcCCCCcCc
Confidence            357899999999999999 99999 99999999875  68999999884

>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2

Probab=98.44  E-value=8.3e-08  Score=89.05  Aligned_cols=50  Identities=12%  Similarity=0.031  Sum_probs=43.5

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~  350 (361)
                      ......|.||++-.+|+|+++|||. ||..|+..|+... ..||+||.++..
T Consensus       205 ~~~~~~c~i~~~~~~dPv~~~~gh~-f~~~~i~~~~~~~~~~cP~~~~~~~~  255 (281)
T 2c2l_A          205 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ  255 (281)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCcccCCcCcCCHhcCCeECCCCCE-ECHHHHHHHHHHCCCCCcCCCCCCch
Confidence            3456789999999999999999999 9999999987654 449999999863

>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}

Probab=98.43  E-value=7.3e-08  Score=84.60  Aligned_cols=50  Identities=26%  Similarity=0.598  Sum_probs=43.8

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~  350 (361)
                      .++...|.||++...+++.++|||. ||..|+..|.... .+||+||..+..
T Consensus        15 ~~~~~~C~IC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~CP~Cr~~~~~   65 (170)
T 3hcs_A           15 LESKYECPICLMALREAVQTPCGHR-FCKACIIKSIRDAGHKCPVDNEILLE   65 (170)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred             CCCCCCCCCCChhhcCcEECCCCCH-HHHHHHHHHHHhCCCCCCCCccCcch
Confidence            3456789999999999999999999 9999999987654 489999999865

>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=98.43  E-value=7.8e-08  Score=75.58  Aligned_cols=52  Identities=19%  Similarity=0.482  Sum_probs=41.5

Q ss_pred             CCCCeeeecccCC--CCeEEeCCC-----CcccCHHHHHHHhccC--CCCccccccccceEE
Q 046132          301 DPGKECVICLSEP--RDTTVLPCR-----HMCMCSGCAKVLRFQT--NRCPICRQPVERLLE  353 (361)
Q Consensus       301 ~~~~eCvICl~~~--~d~vlLPCg-----H~cfC~~Ca~~l~~qs--~~CPICR~~I~~ll~  353 (361)
                      .++..|.||+++.  .+.+++||+     |. |+..|+..|...+  ..||+||..+....+
T Consensus        13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~-fH~~Cl~~Wl~~~~~~~CplCr~~~~~~~~   73 (80)
T 2d8s_A           13 SSQDICRICHCEGDDESPLITPCHCTGSLHF-VHQACLQQWIKSSDTRCCELCKYEFIMETK   73 (80)
T ss_dssp             TTSCCCSSSCCCCCSSSCEECSSSCCSSSCC-EETTHHHHHHHHHCCSBCSSSCCBCCCCCC
T ss_pred             CCCCCCeEcCccccCCCeeEeccccCCcCCe-eCHHHHHHHHhhCCCCCCCCCCCeeecCcc
Confidence            3456899999865  456789997     99 9999999998765  489999998865433

>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}

Probab=98.32  E-value=8.7e-08  Score=80.69  Aligned_cols=45  Identities=22%  Similarity=0.400  Sum_probs=0.0

Q ss_pred             CeeeecccCCCCe------------------EEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          304 KECVICLSEPRDT------------------TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       304 ~eCvICl~~~~d~------------------vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      ..|.||++...+.                  ++++|+|. ||..|+..|......||+||+.+.
T Consensus        49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~-FH~~CI~~Wl~~~~~CP~Cr~~~~  111 (117)
T 4a0k_B           49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE  111 (117)
T ss_dssp             ----------------------------------------------------------------
T ss_pred             CcCeECChhhcCcChhhhcccccccccccccccCCcCce-EcHHHHHHHHHcCCcCCCCCCeee
Confidence            4699999876542                  33689999 999999999988889999999853

>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=98.26  E-value=4.7e-07  Score=72.57  Aligned_cols=46  Identities=20%  Similarity=0.348  Sum_probs=39.8

Q ss_pred             CCCCeeeecccCCCCeEEeC-CCCcccCHHHHHHHhccC------CCCcc--cccc
Q 046132          301 DPGKECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQT------NRCPI--CRQP  347 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs------~~CPI--CR~~  347 (361)
                      .....|.||++..+|+|+++ |||. ||..|+..|+...      .+||+  |+..
T Consensus         5 ~~~~~CPI~~~~~~dPV~~~~cGh~-f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~   59 (94)
T 2yu4_A            5 SSGFTCPITKEEMKKPVKNKVCGHT-YEEDAIVRMIESRQKRKKKAYCPQIGCSHT   59 (94)
T ss_dssp             SSCCBCTTTCSBCSSEEEESSSCCE-EEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred             CcEeECcCcCchhcCCEEcCCCCCe-ecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence            34578999999999999997 9999 9999999987643      48999  9855

>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C

Probab=98.17  E-value=8.7e-07  Score=79.74  Aligned_cols=50  Identities=12%  Similarity=0.022  Sum_probs=43.8

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~  350 (361)
                      ..+...|.||++-.+|+|+++|||. ||..|+..|+... ..||+||.++..
T Consensus       103 ip~~f~CPI~~elm~DPV~~~~Ght-fer~~I~~~l~~~~~tcP~t~~~l~~  153 (179)
T 2f42_A          103 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFDPVTRSPLTQ  153 (179)
T ss_dssp             CCGGGBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             CcHhhcccCccccCCCCeECCCCCE-ECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence            4566899999999999999999999 9999999988654 469999998864

>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}

Probab=97.88  E-value=8.4e-06  Score=66.68  Aligned_cols=50  Identities=28%  Similarity=0.695  Sum_probs=40.0

Q ss_pred             eeecccCCCC-eEEeCCCCcccCHHHHHHHhcc-CCCCccccccccceEEEEc
Q 046132          306 CVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       306 CvICl~~~~d-~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~ll~I~v  356 (361)
                      |.+|---... ..++||.|+ ||.+|+..|..+ .+.||+||.+|..+-++.+
T Consensus         4 C~~C~~Pi~iygRmIPCkHv-FCydCa~~~~~~~~k~Cp~C~~~V~rVe~~~~   55 (101)
T 3vk6_A            4 CDKCGLPIKVYGRMIPCKHV-FCYDCAILHEKKGDKMCPGCSDPVQRIEQCTR   55 (101)
T ss_dssp             CTTTCSBCSEEEEEETTCCE-EEHHHHHHHHHTTCCBCTTTCCBCSEEEEEEG
T ss_pred             cCccCCCeEEEeeecccccc-HHHHHHHHHHhccCCCCcCcCCeeeeeEEecc
Confidence            6667655544 358899998 999999998755 4789999999999887755

>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}

Probab=97.85  E-value=8.5e-06  Score=77.36  Aligned_cols=48  Identities=19%  Similarity=0.292  Sum_probs=41.2

Q ss_pred             CCCCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccC--CCCcc--cccccc
Q 046132          301 DPGKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQT--NRCPI--CRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs--~~CPI--CR~~I~  349 (361)
                      .....|.||++..+++|.. .|||. ||..|+..|+...  ..||+  ||..+.
T Consensus       179 ~~el~CPIcl~~f~DPVts~~CGHs-FcR~cI~~~~~~~~~~~CPvtGCr~~l~  231 (267)
T 3htk_C          179 KIELTCPITCKPYEAPLISRKCNHV-FDRDGIQNYLQGYTTRDCPQAACSQVVS  231 (267)
T ss_dssp             BCCSBCTTTSSBCSSEEEESSSCCE-EEHHHHHHHSTTCSCEECSGGGCSCEEC
T ss_pred             ceeeECcCccCcccCCeeeCCCCCc-ccHHHHHHHHHhCCCCCCCcccccCcCc
Confidence            4457899999999999985 99999 9999999987653  46999  999764

>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3

Probab=97.83  E-value=8.2e-06  Score=60.58  Aligned_cols=48  Identities=19%  Similarity=0.361  Sum_probs=39.1

Q ss_pred             CCCCeeeecccCCCCeEEeCCCC-----cccCHHHHHHHhcc--CCCCcccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCRH-----MCMCSGCAKVLRFQ--TNRCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCgH-----~cfC~~Ca~~l~~q--s~~CPICR~~I~  349 (361)
                      ++...|.||+++..+.+++||.+     . +...|+..|...  +..|++||..+.
T Consensus         4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~-~H~~Cl~~W~~~~~~~~C~~C~~~~~   58 (60)
T 1vyx_A            4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCEeEEeecCCCCceecCcCCCCchhh-hHHHHHHHHHHhCCCCccCCCCCeee
Confidence            35578999998877777899764     5 899999999864  468999998764

>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A

Probab=97.77  E-value=9.3e-06  Score=60.40  Aligned_cols=52  Identities=21%  Similarity=0.287  Sum_probs=44.5

Q ss_pred             CCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc--eEEEE
Q 046132          303 GKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIK  355 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~  355 (361)
                      ...|.||++-.+|++++ +|||. ||.+|+..|.....+||+++.++..  ++.++
T Consensus         3 ~~~CpIs~~~m~dPV~~~~sG~~-yer~~I~~~l~~~~~cP~t~~~L~~~~Lip~~   57 (61)
T 2bay_A            3 HMLCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   57 (61)
T ss_dssp             -CCCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             eEEecCCCCCCCCCEEeCCCCcE-EcHHHHHHHHHhCCCCcCCcCCCChhhcEECc
Confidence            36799999999999999 89999 9999999998777789999999854  44443

>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1

Probab=97.75  E-value=7.8e-06  Score=64.97  Aligned_cols=45  Identities=24%  Similarity=0.572  Sum_probs=34.4

Q ss_pred             CCCeeeecccCCCCeEE---eCCCCcccCHHHHHHHhcc--------CCCCcc--cccc
Q 046132          302 PGKECVICLSEPRDTTV---LPCRHMCMCSGCAKVLRFQ--------TNRCPI--CRQP  347 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vl---LPCgH~cfC~~Ca~~l~~q--------s~~CPI--CR~~  347 (361)
                      +..+|.||++...+..+   .+|||. ||.+|+..++..        ..+||.  ||..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~l~~CgH~-FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~   61 (94)
T 1wim_A            4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACPKQ   61 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred             CCcCCcccCcccccccceEcCCCCCc-ccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence            34689999998766432   379999 999999885432        247999  9987

>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.57  E-value=0.0001  Score=57.13  Aligned_cols=48  Identities=25%  Similarity=0.344  Sum_probs=39.3

Q ss_pred             CCCeeeecccCCCCeEE-eCCCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTV-LPCRHMCMCSGCAKVLRFQT--NRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vl-LPCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~  350 (361)
                      ...+|.||++....... .-|+|. |...|+.+|....  .+||+||+....
T Consensus        14 ~i~~C~IC~~~i~~g~~C~~C~h~-fH~~Ci~kWl~~~~~~~CP~Cr~~w~~   64 (74)
T 2ct0_A           14 AVKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH   64 (74)
T ss_dssp             SSCBCSSSCCBCSSSEECSSSCCE-ECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred             CCCcCcchhhHcccCCccCCCCch-hhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence            44689999997765443 379999 9999999998776  789999998764

>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}

Probab=97.29  E-value=3.6e-05  Score=75.76  Aligned_cols=50  Identities=18%  Similarity=0.415  Sum_probs=38.3

Q ss_pred             CCCCCeeeecccCCCCeE--------EeCCCCcccCHHHHHHHhccC-----------CCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTT--------VLPCRHMCMCSGCAKVLRFQT-----------NRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~v--------lLPCgH~cfC~~Ca~~l~~qs-----------~~CPICR~~I~~  350 (361)
                      ++...+|.||++...+.-        -..|+|. |+..|+..|....           ..||.||++|..
T Consensus       305 ee~~~ECaICys~~l~~g~lPdk~C~n~~C~h~-FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~  373 (381)
T 3k1l_B          305 DNEELRCNICFAYRLDGGEVPLVSCDNAKCVLK-CHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST  373 (381)
T ss_dssp             CCSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCC-BCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred             ccCCccCcccceeecCCCCCccccccCCccCCc-cchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence            445679999998766511        1369999 9999999997532           469999998864

>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}

Probab=91.88  E-value=0.13  Score=47.82  Aligned_cols=47  Identities=26%  Similarity=0.358  Sum_probs=36.7

Q ss_pred             CCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccC--CCCccccccccc
Q 046132          303 GKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQT--NRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs--~~CPICR~~I~~  350 (361)
                      -.+|.||.+-......- .|+|. |...|+..|....  .+||.|+.....
T Consensus       180 i~~C~iC~~iv~~g~~C~~C~~~-~H~~C~~~~~~~~~~~~CP~C~~~W~~  229 (238)
T 3nw0_A          180 VKICNICHSLLIQGQSCETCGIR-MHLPCVAKYFQSNAEPRCPHCNDYWPH  229 (238)
T ss_dssp             CCBCTTTCSBCSSCEECSSSCCE-ECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred             CCcCcchhhHHhCCcccCccChH-HHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence            57899999866655433 39999 9999999987654  489999987654

>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}

Probab=90.68  E-value=0.087  Score=41.64  Aligned_cols=30  Identities=23%  Similarity=0.625  Sum_probs=25.2

Q ss_pred             CCeeeecccC-CCCeEE--eCCCCcccCHHHHHH
Q 046132          303 GKECVICLSE-PRDTTV--LPCRHMCMCSGCAKV  333 (361)
Q Consensus       303 ~~eCvICl~~-~~d~vl--LPCgH~cfC~~Ca~~  333 (361)
                      +..|.||.+. .++++.  +.|+|. ||..|+..
T Consensus         3 e~~C~~C~~~~~~~av~~C~~C~~~-~C~~Cl~~   35 (101)
T 2jun_A            3 KVLCQFCDQDPAQDAVKTCVTCEVS-YCDECLKA   35 (101)
T ss_dssp             CCBCTTCCSSSCCBCCEEETTTTEE-ECHHHHHH
T ss_pred             CCCCcCCCCCCCCCceEECCcCChH-HhHHHCHH
Confidence            4679999975 566665  899999 99999997

>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3

Probab=80.44  E-value=0.91  Score=35.70  Aligned_cols=33  Identities=27%  Similarity=0.604  Sum_probs=27.9

Q ss_pred             CCCCeeeecccCCCCeEEeCCC----CcccCHHHHHHH
Q 046132          301 DPGKECVICLSEPRDTTVLPCR----HMCMCSGCAKVL  334 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCg----H~cfC~~Ca~~l  334 (361)
                      .....|.+|.++..|+-++-|-    |. ||+-|.+..
T Consensus        13 ~a~l~CtlC~erLEdtHFVQCPsv~~Hk-FCFpCsr~s   49 (93)
T 2cs3_A           13 SGPLCCTICHERLEDTHFVQCPSVPSHK-FCFPCSRES   49 (93)
T ss_dssp             CCSCCCSSSCSCCSSTTSEECSSCSSCE-ECHHHHHHH
T ss_pred             CCeeEeecchhhhccCceeeCCCccCCe-eeccccHHH
Confidence            3457899999999999888884    88 999999873

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	361
d1fbva4	79	g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [Ta	5e-15
d1ur6b_	52	g.44.1.1 (B:) Not-4 N-terminal RING finger domain	3e-11
d1chca_	68	g.44.1.1 (A:) Immediate early protein, IEEHV {Equi	4e-11
d1bora_	56	g.44.1.1 (A:) Acute promyelocytic leukaemia proto-	1e-10
d1iyma_	55	g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sati	6e-09
d1jm7a_	103	g.44.1.1 (A:) brca1 RING domain {Human (Homo sapie	1e-07
d1rmda2	86	g.44.1.1 (A:1-86) V(D)J recombination activating p	3e-07
d1g25a_	65	g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapi	6e-06
d2baya1	56	g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {	2e-05
d1jm7b_	97	g.44.1.1 (B:) bard1 RING domain {Human (Homo sapie	1e-04
d3dplr1	88	g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of S	2e-04
d1vyxa_	60	g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal do	0.001

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]} Length = 79

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 67.3 bits (164), Expect = 5e-15
 Identities = 14/61 (22%), Positives = 23/61 (37%)

Query: 297 VDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKV 356
            +     + C IC    +D  + PC H+   S        +   CP CR  ++    I V
Sbjct: 17  CEMGSTFQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV 76

Query: 357 N 357
           +
Sbjct: 77  D 77

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]} Length = 52

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.9 bits (134), Expect = 3e-11
 Identities = 9/49 (18%), Positives = 16/49 (32%), Gaps = 4/49 (8%)

Query: 305 ECVICLSEPRDT----TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE 349
           EC +C+              C +        ++   +   CP CR+P  
Sbjct: 2   ECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYP 50

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]} Length = 68

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

 Score = 56.1 bits (135), Expect = 4e-11
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 302 PGKECVICLSEPRD-TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLL 352
             + C ICL +P + +  LPC H   C  C      Q   CP+C+ PVE ++
Sbjct: 4   VAERCPICLEDPSNYSMALPCLHAF-CYVCITRWIRQNPTCPLCKVPVESVV 54

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 54.5 bits (131), Expect = 1e-10
 Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 4/44 (9%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
            C  C +E +   +LPC H   CSGC   L     +CPIC+ P 
Sbjct: 8   RCQQCQAEAKCPKLLPCLHTL-CSGC---LEASGMQCPICQAPW 47

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]} Length = 55

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

 Score = 49.5 bits (118), Expect = 6e-09
 Identities = 16/51 (31%), Positives = 22/51 (43%), Gaps = 3/51 (5%)

Query: 301 DPGKECVICLSEPRD---TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV 348
           D G EC +CL+E  D      LP       + C  +     + CP+CR  V
Sbjct: 3   DDGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTV 53

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.0 bits (111), Expect = 1e-07
 Identities = 17/74 (22%), Positives = 28/74 (37%), Gaps = 17/74 (22%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ--TNRCPICRQP--------------- 347
           EC ICL   ++     C H+       K+L  +   ++CP+C+                 
Sbjct: 23  ECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITKRSLQESTRFSQL 82

Query: 348 VERLLEIKVNGPEE 361
           VE LL+I      +
Sbjct: 83  VEELLKIICAFQLD 96

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 86

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 45.7 bits (108), Expect = 3e-07
 Identities = 14/44 (31%), Positives = 19/44 (43%), Gaps = 2/44 (4%)

Query: 306 CVICLSEPRDTTVLPCRHMCMCSGC-AKVLRFQTNRCPICRQPV 348
           C IC     D     C+H+  C  C  + L+   + CP CR P 
Sbjct: 26  CQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPC 68

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]} Length = 65

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.3 bits (96), Expect = 6e-06
 Identities = 10/51 (19%), Positives = 14/51 (27%), Gaps = 5/51 (9%)

Query: 305 ECVICLSEPRD-----TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER 350
            C  C +           V  C H    S    +       CP C  P+ +
Sbjct: 5   GCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRK 55

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 56

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

 Score = 39.7 bits (92), Expect = 2e-05
 Identities = 12/54 (22%), Positives = 19/54 (35%), Gaps = 2/54 (3%)

Query: 306 CVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPV--ERLLEIKVN 357
           C I    PR   + P           +     T   PI  +P+  E ++EI  +
Sbjct: 3   CAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIEEIVEIVPS 56

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)

Query: 305 ECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLEIKVN 357
            C  C +  R+   L       CS C  V       CP+C  P   + ++K+N
Sbjct: 24  RCSRCTNILREPVCLGGCEHIFCSNC--VSDCIGTGCPVCYTPA-WIQDLKIN 73

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]} Length = 88

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (87), Expect = 2e-04
 Identities = 10/68 (14%), Positives = 14/68 (20%), Gaps = 19/68 (27%)

Query: 300 NDPGKECVICLSEPRDT------------------TVLPCRHMCMCSGCAKVLRFQTNRC 341
           +     C IC +   D                       C H      C          C
Sbjct: 18  DIVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNH-AFHFHCISRWLKTRQVC 76

Query: 342 PICRQPVE 349
           P+  +  E
Sbjct: 77  PLDNREWE 84

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]} Length = 60

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

 Score = 34.5 bits (78), Expect = 0.001
 Identities = 9/54 (16%), Positives = 15/54 (27%), Gaps = 6/54 (11%)

Query: 300 NDPGKECVICLSEPRDTTVLPCRHMC----MCSGCAK--VLRFQTNRCPICRQP 347
           ++    C IC  E  +     C        +   C    +   +   C IC   
Sbjct: 3   DEDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVV 56

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	361
d1fbva4	79	CBL {Human (Homo sapiens) [TaxId: 9606]}	99.23
d1chca_	68	Immediate early protein, IEEHV {Equine herpesvirus	99.14
d1iyma_	55	EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 45	99.03
d1bora_	56	Acute promyelocytic leukaemia proto-oncoprotein PM	98.94
d1g25a_	65	TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9	98.88
d1rmda2	86	V(D)J recombination activating protein 1 (RAG1), d	98.88
d2baya1	56	Pre-mRNA splicing factor Prp19 {Baker's yeast (Sac	98.86
d1ur6b_	52	Not-4 N-terminal RING finger domain {Human (Homo s	98.84
d1jm7a_	103	brca1 RING domain {Human (Homo sapiens) [TaxId: 96	98.74
d1v87a_	114	Deltex protein 2 RING-H2 domain {Mouse (Mus muscul	98.74
d3dplr1	88	RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase	98.69
d1t1ha_	78	E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsi	98.62
d1wgma_	98	Ubiquitin conjugation factor E4A {Human (Homo sapi	98.62
d2c2la2	80	STIP1 homology and U box-containing protein 1, STU	98.61
d1jm7b_	97	bard1 RING domain {Human (Homo sapiens) [TaxId: 96	98.51
d1vyxa_	60	IE1B protein (ORF K3), N-terminal domain {Kaposi's	98.5
d1wima_	94	UbcM4-interacting protein 4 (KIAA0161) {Human (Hom	97.54

>d1fbva4 g.44.1.1 (A:356-434) CBL {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: CBL
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.23  E-value=1.6e-12  Score=100.25  Aligned_cols=52  Identities=31%  Similarity=0.769  Sum_probs=45.8

Q ss_pred             CeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccceEEEEc
Q 046132          304 KECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVERLLEIKV  356 (361)
Q Consensus       304 ~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~ll~I~v  356 (361)
                      ..|.||++...++++++|||. ||.+|+..|.. +..+||+||..|.....|.+
T Consensus        24 ~~C~IC~~~~~~~~~~~CgH~-fC~~Ci~~wl~~~~~~CP~Cr~~i~~~~~i~i   76 (79)
T d1fbva4          24 QLCKICAENDKDVKIEPCGHL-MCTSCLTSWQESEGQGCPFCRCEIKGTEPIVV   76 (79)
T ss_dssp             TBCTTTSSSBCCEECSSSCCE-ECHHHHHHHHHTTCCSCTTTCCCCCCCCCSSC
T ss_pred             CCCccCCCcCCCeEEeCCCCe-eeHHHHHHHHHHCcCcCCCCCcCccCCceeec
Confidence            579999999999999999999 99999999976 45789999999988766554

>d1chca_ g.44.1.1 (A:) Immediate early protein, IEEHV {Equine herpesvirus 1 [TaxId: 10326]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Immediate early protein, IEEHV
species: Equine herpesvirus 1 [TaxId: 10326]

Probab=99.14  E-value=6.8e-12  Score=93.82  Aligned_cols=51  Identities=35%  Similarity=0.858  Sum_probs=44.4

Q ss_pred             CCCeeeecccCCCCe-EEeCCCCcccCHHHHHHHhccCCCCccccccccceEE
Q 046132          302 PGKECVICLSEPRDT-TVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVERLLE  353 (361)
Q Consensus       302 ~~~eCvICl~~~~d~-vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~ll~  353 (361)
                      .+.+|.||++...+. ++++|||. ||..|+..|..++.+||+||+.|..++.
T Consensus         4 ~~d~C~IC~~~~~~~~~~~~C~H~-Fc~~Ci~~w~~~~~~CP~CR~~i~~~~~   55 (68)
T d1chca_           4 VAERCPICLEDPSNYSMALPCLHA-FCYVCITRWIRQNPTCPLCKVPVESVVH   55 (68)
T ss_dssp             CCCCCSSCCSCCCSCEEETTTTEE-ESTTHHHHHHHHSCSTTTTCCCCCCEEC
T ss_pred             CCCCCccCCcCccCCcEEeCCCCc-CcHHHHHHHHHhCCcCCCCCcchHhhcc
Confidence            356799999998775 56899999 9999999999989999999999987654

>d1iyma_ g.44.1.1 (A:) EL5 RING-H2 domain {Rice (Oryza sativa) [TaxId: 4530]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: EL5 RING-H2 domain
species: Rice (Oryza sativa) [TaxId: 4530]

Probab=99.03  E-value=4.8e-11  Score=85.92  Aligned_cols=47  Identities=36%  Similarity=0.805  Sum_probs=39.5

Q ss_pred             CCCCeeeecccCCCC---eEEe-CCCCcccCHHHHHHHhccCCCCccccccc
Q 046132          301 DPGKECVICLSEPRD---TTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPV  348 (361)
Q Consensus       301 ~~~~eCvICl~~~~d---~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I  348 (361)
                      +++.+|.||+++..+   ++.+ .|+|. ||..|+..|...+.+||+||+.|
T Consensus         3 ed~~~C~ICl~~~~~~~~~~~l~~C~H~-Fh~~Ci~~Wl~~~~~CP~CR~~i   53 (55)
T d1iyma_           3 DDGVECAVCLAELEDGEEARFLPRCGHG-FHAECVDMWLGSHSTCPLCRLTV   53 (55)
T ss_dssp             CCSCCCTTTCCCCCTTSCCEECSSSCCE-ECTTHHHHTTTTCCSCSSSCCCS
T ss_pred             CCCCCCeEECccccCCCEEEEeCCCCCc-ccHHHHHHHHHhCCcCCCCCCEe
Confidence            445689999998754   3445 59999 99999999999889999999976

>d1bora_ g.44.1.1 (A:) Acute promyelocytic leukaemia proto-oncoprotein PML {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Acute promyelocytic leukaemia proto-oncoprotein PML
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.94  E-value=2.7e-11  Score=87.67  Aligned_cols=45  Identities=36%  Similarity=0.834  Sum_probs=39.4

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ...+|.||++...++++++|||+ ||..|+.+|   +.+||+||+.+..
T Consensus         5 ~~l~C~IC~~~~~~p~~lpCgH~-fC~~Ci~~~---~~~CP~Cr~~~~~   49 (56)
T d1bora_           5 QFLRCQQCQAEAKCPKLLPCLHT-LCSGCLEAS---GMQCPICQAPWPL   49 (56)
T ss_dssp             CCSSCSSSCSSCBCCSCSTTSCC-SBTTTCSSS---SSSCSSCCSSSSC
T ss_pred             CCCCCcccCcccCCCEEecCCCH-HhHHHHHcC---CCcCcCCCCcccC
Confidence            45789999999999999999999 999998754   5689999998853

>d1g25a_ g.44.1.1 (A:) TFIIH Mat1 subunit {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: TFIIH Mat1 subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=4.2e-10  Score=83.22  Aligned_cols=47  Identities=26%  Similarity=0.724  Sum_probs=37.9

Q ss_pred             CCeeeecccC-----CCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          303 GKECVICLSE-----PRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~-----~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      +..|.||++.     ....++++|||. ||.+|+..|... +.+||+||+.+..
T Consensus         3 d~~CpIC~~~~~~~~~~~~~~~~C~H~-fc~~Ci~~~~~~~~~~CP~CR~~i~~   55 (65)
T d1g25a_           3 DQGCPRCKTTKYRNPSLKLMVNVCGHT-LCESCVDLLFVRGAGNCPECGTPLRK   55 (65)
T ss_dssp             TTCCSTTTTHHHHCSSCCEEECTTCCC-EEHHHHHHHHHTTSSSCTTTCCCCSS
T ss_pred             CCCCCcCCceeecCCceEEEeCccChH-hhHHHHHHHhCcCcCCCCCCCcCccc
Confidence            4689999974     223467799999 999999999754 5679999999854

>d1rmda2 g.44.1.1 (A:1-86) V(D)J recombination activating protein 1 (RAG1), dimerization domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: V(D)J recombination activating protein 1 (RAG1), dimerization domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.88  E-value=3.9e-10  Score=88.33  Aligned_cols=48  Identities=27%  Similarity=0.552  Sum_probs=42.1

Q ss_pred             CCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhc-cCCCCccccccccc
Q 046132          302 PGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRF-QTNRCPICRQPVER  350 (361)
Q Consensus       302 ~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~-qs~~CPICR~~I~~  350 (361)
                      +...|.||++...++++++|||. ||..|+..|.. +..+||+||.++..
T Consensus        22 ~~l~C~IC~~~~~~pv~~~CgH~-FC~~Ci~~~~~~~~~~CP~Cr~p~~~   70 (86)
T d1rmda2          22 KSISCQICEHILADPVETSCKHL-FCRICILRCLKVMGSYCPSCRYPCFP   70 (86)
T ss_dssp             HHTBCTTTCSBCSSEEECTTSCE-EEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred             cCcCCccCCcchhcceecCCCCh-hhHHHHHHHHhhCCCcCcccCCCCCh
Confidence            34689999999999999999999 99999999864 45689999998753

>d2baya1 g.44.1.2 (A:1-56) Pre-mRNA splicing factor Prp19 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Pre-mRNA splicing factor Prp19
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=98.86  E-value=3e-10  Score=81.69  Aligned_cols=50  Identities=24%  Similarity=0.372  Sum_probs=44.3

Q ss_pred             eeeecccCCCCeEEeC-CCCcccCHHHHHHHhccCCCCccccccccc--eEEEE
Q 046132          305 ECVICLSEPRDTTVLP-CRHMCMCSGCAKVLRFQTNRCPICRQPVER--LLEIK  355 (361)
Q Consensus       305 eCvICl~~~~d~vlLP-CgH~cfC~~Ca~~l~~qs~~CPICR~~I~~--ll~I~  355 (361)
                      .|.||++..++.++++ |||. ||.+|+..|..++.+||+||+++..  +++|+
T Consensus         2 ~C~Ic~~~~~~Pv~~~~cGh~-fc~~cI~~~l~~~~~CP~c~~~l~~~dLipik   54 (56)
T d2baya1           2 LCAISGKVPRRPVLSPKSRTI-FEKSLLEQYVKDTGNDPITNEPLSIEEIVEIV   54 (56)
T ss_dssp             CCTTTCSCCSSEEEETTTTEE-EEHHHHHHHHHHHSBCTTTCCBCCGGGCEECC
T ss_pred             CCccCCchHHhcCccCCCCCc-ccHHHHHHHHhhccCCCccCCcCCHHhceeCC
Confidence            6999999999999986 9999 9999999999988999999999864  45543

>d1ur6b_ g.44.1.1 (B:) Not-4 N-terminal RING finger domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Not-4 N-terminal RING finger domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.84  E-value=5.2e-10  Score=79.31  Aligned_cols=46  Identities=26%  Similarity=0.615  Sum_probs=37.2

Q ss_pred             CeeeecccCCCC----eEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          304 KECVICLSEPRD----TTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       304 ~eCvICl~~~~d----~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      .+|.||+++...    ..+++|||. ||..|+..|... +.+||+||+++..
T Consensus         1 leCpICl~~~~~~~~~~~~~~CgH~-~c~~C~~~w~~~~~~~CP~CR~~~~~   51 (52)
T d1ur6b_           1 VECPLCMEPLEIDDINFFPCTCGYQ-ICRFCWHRIRTDENGLCPACRKPYPE   51 (52)
T ss_dssp             CEETTTTEECCGGGTTCCSSSSSCC-CCHHHHHHHTTTSCCBCTTTCCBCSC
T ss_pred             CCCcCCChhhhCCCceEEecCCCCc-cchHHHHHHHhhcCCCCCccCCcCCC
Confidence            479999996532    345689999 999999999875 4579999998863

>d1jm7a_ g.44.1.1 (A:) brca1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: brca1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.74  E-value=1.3e-09  Score=87.11  Aligned_cols=46  Identities=30%  Similarity=0.734  Sum_probs=40.5

Q ss_pred             CCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC---CCCcccccccc
Q 046132          303 GKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT---NRCPICRQPVE  349 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs---~~CPICR~~I~  349 (361)
                      ...|.||++...+++.++|||. ||..|+..|+...   ..||+||..+.
T Consensus        21 ~l~CpIC~~~~~~pv~~~CgH~-fC~~Ci~~~~~~~~~~~~CP~Cr~~~~   69 (103)
T d1jm7a_          21 ILECPICLELIKEPVSTKCDHI-FCKFCMLKLLNQKKGPSQCPLCKNDIT   69 (103)
T ss_dssp             HTSCSSSCCCCSSCCBCTTSCC-CCSHHHHHHHHSSSSSCCCTTTSCCCC
T ss_pred             CcCCCccCchhCCeEEcCCCCc-hhhHHHHHHHHHCCCCCcCcCCCCcCC
Confidence            3579999999999999999999 9999999987543   47999999885

>d1v87a_ g.44.1.1 (A:) Deltex protein 2 RING-H2 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: Deltex protein 2 RING-H2 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.74  E-value=2.2e-09  Score=86.83  Aligned_cols=47  Identities=19%  Similarity=0.530  Sum_probs=36.9

Q ss_pred             CCeeeecccCCC------------------CeEEeCCCCcccCHHHHHHHhccC-----CCCccccccccc
Q 046132          303 GKECVICLSEPR------------------DTTVLPCRHMCMCSGCAKVLRFQT-----NRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~~~------------------d~vlLPCgH~cfC~~Ca~~l~~qs-----~~CPICR~~I~~  350 (361)
                      +..|.||++...                  ...+++|+|. ||..|+..|+...     .+||+||+.+..
T Consensus        25 ~~~C~IC~e~l~~~~~~~~~~~~~~~~~~~~~~~~~CgH~-FH~~Ci~~Wl~~~~~~~~~~CP~CR~~~~~   94 (114)
T d1v87a_          25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHA-FHLLCLLAMYCNGNKDGSLQCPSCKTIYGE   94 (114)
T ss_dssp             SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCE-ECHHHHHHHHHHTCCSSCCBCTTTCCBSSS
T ss_pred             cccccchhheecccccccccccccccccccceEECCCCCh-hhHHHHHHHHHhcCcCCCCccccccchhcc
Confidence            357999998643                  2467899999 9999999998643     379999997743

>d3dplr1 g.44.1.1 (R:19-106) RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: RIGG-box protein 1 (RBX1) of SCF ubiquitin ligase complex
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.69  E-value=5.5e-09  Score=81.37  Aligned_cols=33  Identities=18%  Similarity=0.275  Sum_probs=30.3

Q ss_pred             eEEeCCCCcccCHHHHHHHhccCCCCcccccccc
Q 046132          316 TTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVE  349 (361)
Q Consensus       316 ~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~  349 (361)
                      .++++|||. ||..|+..|.....+||+||+.+.
T Consensus        52 ~~~~~C~H~-FH~~Ci~~Wl~~~~~CP~CR~~~~   84 (88)
T d3dplr1          52 VAWGVCNHA-FHFHCISRWLKTRQVCPLDNREWE   84 (88)
T ss_dssp             EEEETTSCE-EEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred             eEEccccCc-ccHHHHHHHHHHCCcCCCCCCccc
Confidence            567899999 999999999999999999999874

>d1t1ha_ g.44.1.2 (A:) E3 ubiquitin ligase PUB14 {Thale-cress (Arabidopsis thaliana) [TaxId: 3702]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: E3 ubiquitin ligase PUB14
species: Thale-cress (Arabidopsis thaliana) [TaxId: 3702]

Probab=98.62  E-value=1.1e-08  Score=77.63  Aligned_cols=50  Identities=12%  Similarity=0.145  Sum_probs=44.0

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccC-CCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQT-NRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs-~~CPICR~~I~~  350 (361)
                      ..++..|.||++..+|+++++|||. ||..|+..|.... ..||+||.++..
T Consensus         5 iP~~l~CpIc~~~m~dPV~~~cgh~-fc~~ci~~~~~~~~~~cP~~~~~l~~   55 (78)
T d1t1ha_           5 FPEYFRCPISLELMKDPVIVSTGQT-YERSSIQKWLDAGHKTCPKSQETLLH   55 (78)
T ss_dssp             CSSSSSCTTTSCCCSSEEEETTTEE-EEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred             CCccCCCcCcCchhhCceEccCCCc-chHHHHHHHHHHCCCCCCcccccCCc
Confidence            3456889999999999999999999 9999999988654 579999999865

>d1wgma_ g.44.1.2 (A:) Ubiquitin conjugation factor E4A {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: Ubiquitin conjugation factor E4A
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.62  E-value=1.8e-08  Score=80.14  Aligned_cols=55  Identities=15%  Similarity=0.053  Sum_probs=47.3

Q ss_pred             CCCCCCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          296 DVDANDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       296 ~~~~~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      +..+..++..|.||++..+|+|+++|+|..||..|+..|......||+||+++..
T Consensus        15 ~~~~~P~~f~CPI~~~lm~dPV~~~~~~~ty~r~~I~~~l~~~~~~P~~~~~l~~   69 (98)
T d1wgma_          15 TYADACDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM   69 (98)
T ss_dssp             CCCSCCTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred             hhcCCcHHhCCcCchhHHHHHHhcccccchhhHHHHHHHHHhcCCcccccccccc
Confidence            3344556789999999999999999887559999999999888899999999864

>d2c2la2 g.44.1.2 (A:225-304) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: U-box
domain: STIP1 homology and U box-containing protein 1, STUB1
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.61  E-value=7.2e-09  Score=79.08  Aligned_cols=50  Identities=12%  Similarity=0.024  Sum_probs=43.5

Q ss_pred             CCCCCeeeecccCCCCeEEeCCCCcccCHHHHHHHhcc-CCCCccccccccc
Q 046132          300 NDPGKECVICLSEPRDTTVLPCRHMCMCSGCAKVLRFQ-TNRCPICRQPVER  350 (361)
Q Consensus       300 ~~~~~eCvICl~~~~d~vlLPCgH~cfC~~Ca~~l~~q-s~~CPICR~~I~~  350 (361)
                      ..+...|.||++-.+++++++|||. ||..|+..|..+ ...||+||.++..
T Consensus         4 iP~~l~CpIc~~l~~dPv~~~cGht-fc~~ci~~~l~~~~~~cP~c~~~l~~   54 (80)
T d2c2la2           4 IPDYLCGKISFELMREPCITPSGIT-YDRKDIEEHLQRVGHFNPVTRSPLTQ   54 (80)
T ss_dssp             CCSTTBCTTTCSBCSSEEECSSCCE-EETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred             CCccccCcCcCchhhhhcccCCcCe-ecHHHHHHHHhcCCccCCCccccccc
Confidence            3456889999999999999999999 999999998754 4679999998864

>d1jm7b_ g.44.1.1 (B:) bard1 RING domain {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: bard1 RING domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.51  E-value=7.2e-09  Score=81.78  Aligned_cols=45  Identities=29%  Similarity=0.669  Sum_probs=38.7

Q ss_pred             CCeeeecccCCCCeEEe-CCCCcccCHHHHHHHhccCCCCccccccccc
Q 046132          303 GKECVICLSEPRDTTVL-PCRHMCMCSGCAKVLRFQTNRCPICRQPVER  350 (361)
Q Consensus       303 ~~eCvICl~~~~d~vlL-PCgH~cfC~~Ca~~l~~qs~~CPICR~~I~~  350 (361)
                      ...|.||++...+++.+ +|||. ||..|+..|.  ..+||+||..+..
T Consensus        22 ~l~C~IC~~~~~~pv~~~~CgH~-fC~~Ci~~~~--~~~CP~Cr~~~~~   67 (97)
T d1jm7b_          22 LLRCSRCTNILREPVCLGGCEHI-FCSNCVSDCI--GTGCPVCYTPAWI   67 (97)
T ss_dssp             TTSCSSSCSCCSSCBCCCSSSCC-BCTTTGGGGT--TTBCSSSCCBCSC
T ss_pred             cCCCccCCchhhcCceeCCCCCc-hhHHHHHHHH--hccccccCCcCch
Confidence            46899999999999865 89999 9999999987  3569999987753

>d1vyxa_ g.44.1.3 (A:) IE1B protein (ORF K3), N-terminal domain {Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: Variant RING domain
domain: IE1B protein (ORF K3), N-terminal domain
species: Kaposi's sarcoma-associated herpesvirus, KSHV, HHV8 [TaxId: 37296]

Probab=98.50  E-value=2.3e-08  Score=72.28  Aligned_cols=48  Identities=19%  Similarity=0.373  Sum_probs=40.0

Q ss_pred             CCCCeeeecccCCCCeEEeCCC-----CcccCHHHHHHHhcc--CCCCcccccccc
Q 046132          301 DPGKECVICLSEPRDTTVLPCR-----HMCMCSGCAKVLRFQ--TNRCPICRQPVE  349 (361)
Q Consensus       301 ~~~~eCvICl~~~~d~vlLPCg-----H~cfC~~Ca~~l~~q--s~~CPICR~~I~  349 (361)
                      ++...|.||++...+..+.+|+     |. ||..|+..|...  +.+||+||+.+.
T Consensus         4 ed~~~C~IC~~~~~~~~~~~c~c~~c~h~-~H~~Cl~~W~~~~~~~~CP~Cr~~~~   58 (60)
T d1vyxa_           4 EDVPVCWICNEELGNERFRACGCTGELEN-VHRSCLSTWLTISRNTACQICGVVYN   58 (60)
T ss_dssp             CSCCEETTTTEECSCCCCCSCCCSSGGGS-CCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred             CCCCCCccCCccCCCceeEecccCCCCCE-EcHHHHHHHHhhCCCCCCcccCCeee
Confidence            4567899999988888778875     99 999999999753  467999999875

>d1wima_ g.44.1.1 (A:) UbcM4-interacting protein 4 (KIAA0161) {Human (Homo sapiens) [TaxId: 9606]}

class: Small proteins
fold: RING/U-box
superfamily: RING/U-box
family: RING finger domain, C3HC4
domain: UbcM4-interacting protein 4 (KIAA0161)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=1.3e-05  Score=61.88  Aligned_cols=45  Identities=29%  Similarity=0.584  Sum_probs=33.0

Q ss_pred             CCCeeeecccCCC--C-eEEeCCCCcccCHHHHHHHhcc-----C---CCCcccccc
Q 046132          302 PGKECVICLSEPR--D-TTVLPCRHMCMCSGCAKVLRFQ-----T---NRCPICRQP  347 (361)
Q Consensus       302 ~~~eCvICl~~~~--d-~vlLPCgH~cfC~~Ca~~l~~q-----s---~~CPICR~~  347 (361)
                      ...+|.||+++..  + +.++.|+|. ||..|+..|...     .   -+||.|+..
T Consensus         4 ~~~~C~IC~~~~~~~~~~~~~~C~H~-fC~~Cl~~~~~~~i~~~~~~~i~CP~~~C~   59 (94)
T d1wima_           4 GSSGCKLCLGEYPVEQMTTIAQCQCI-FCTLCLKQYVELLIKEGLETAISCPDAACP   59 (94)
T ss_dssp             SBCCCSSSCCCCBGGGEEEETTTTEE-EEHHHHHHHHHHHHHHCSCCCEECSCTTCS
T ss_pred             CCCcCccCCCcccCCceEEECCCCCE-eCCcCHHHHHHHHHhcCCccccCCcCCCCC
Confidence            3468999999764  3 445689999 999999986532     1   259987543