Citrus Sinensis ID: 046160

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110----
Protein Sequence
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKRVQENNHD
Secondary Structure (PSIPRED)
cEEEEcHHHHHHHHHHHHHHccccccccHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccHHHHHHHHHHHHHHHHHHHcccccccHHHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHcccccHcccccEEccccccccccccccEEEcccccc
Coil and Loop (DISEMBL)
mvrpyfepWVLIGLNILAIklnfddpleatrlhggwgfigSQVTELSVIVGWVRETMGPLFHALHKLKMLRILedeeitgldissdsgyayvcssknhprfyadYKRVQENNHD
Flexible Loop (DISEMBL)
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKrvqennhd
Low Complexity Region (SEG)
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKRVQENNHD
Disordered region (IsUnstruct)
***PYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADY*********
Disordered Region (DISOPRED)
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC*********************
Disordered Region (DISEMBL)
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKRVQENNHD
Disordered Region (DISPRO)
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKR*******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKRVQENNHD
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	114	2.2.26 [Sep-21-2011]
Q9FVN0	460	Ammonium transporter 1 me	N/A	no	0.894	0.221	0.454	3e-24
O04161	514	Ammonium transporter 1 me	N/A	no	0.947	0.210	0.374	4e-21
Q9ZPJ8	514	Ammonium transporter 1 me	yes	no	0.763	0.169	0.393	7e-20
P58905	488	Ammonium transporter 1 me	N/A	no	0.885	0.206	0.337	2e-18
Q7XQ12	498	Ammonium transporter 1 me	yes	no	0.771	0.176	0.406	2e-18
Q9SVT8	504	Ammonium transporter 1 me	no	no	0.807	0.182	0.395	7e-17
P54144	501	Ammonium transporter 1 me	no	no	0.754	0.171	0.358	8e-16
Q6K9G1	496	Ammonium transporter 1 me	no	no	0.763	0.175	0.373	9e-16
Q9LK16	496	Putative ammonium transpo	no	no	0.728	0.167	0.391	2e-15
Q6K9G3	498	Ammonium transporter 1 me	no	no	0.868	0.198	0.333	4e-15

>sp|Q9FVN0|AMT13_SOLLC Ammonium transporter 1 member 3 OS=Solanum lycopersicum GN=AMT1-3 PE=2 SV=1

 Score =  110 bits (275), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 78/143 (54%), Gaps = 41/143 (28%)

Query: 9   WVLIGLNILAIKLNFDDPLEATRLHGG---WGFI-------------------------- 39
           WVLIGLNILA+K  FDDPLEA +LHGG   WG I                          
Sbjct: 317 WVLIGLNILALKFKFDDPLEAAQLHGGCGAWGLIFTGLFAKEEFVLQAYNSGKTQIIRPS 376

Query: 40  -----------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
                      G+Q+ EL  IV WV  TMGPLF+ L KL +LRI  DEE+ GLDISS  G
Sbjct: 377 GLILGGGWGLFGAQIVELLSIVVWVSLTMGPLFYLLQKLGILRISSDEEVAGLDISSHGG 436

Query: 89  YAYVCSS-KNHPRFYADYKRVQE 110
           YAY  S  +++ RFY +Y R+Q+
Sbjct: 437 YAYDASQEESNARFYGEYLRMQQ 459

Ammonium transporter that may be involved in ammonium transport throughout the plant.
Solanum lycopersicum (taxid: 4081)

>sp|O04161|AMT12_SOLLC Ammonium transporter 1 member 2 OS=Solanum lycopersicum GN=AMT1-2 PE=2 SV=1

 Score = 99.8 bits (247), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 55/147 (37%), Positives = 74/147 (50%), Gaps = 39/147 (26%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI---------------------- 39
           +   WVLIG N LA KL +DDPLEA +LHGG   WG I                      
Sbjct: 353 FIAAWVLIGFNALAAKLKYDDPLEAAQLHGGCGSWGIIFTGLFAKKEYVNEVYPGFPNRP 412

Query: 40  ------------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDS 87
                       G+QV ++ VI+GWV  TMGPLF+ LHK K+LRI  D+E  G+D++   
Sbjct: 413 YGLFMGGGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHG 472

Query: 88  GYAYVCSSKNHPRFYADYK--RVQENN 112
           G+AY+   ++       +K  RV+  N
Sbjct: 473 GFAYIYHDEDEGSSMPGFKMTRVEPTN 499

Ammonium transporter probably involved in ammonium uptake from the soil.

Solanum lycopersicum (taxid: 4081)

>sp|Q9ZPJ8|AMT12_ARATH Ammonium transporter 1 member 2 OS=Arabidopsis thaliana GN=AMT1-2 PE=1 SV=1

 Score = 95.9 bits (237), Expect = 7e-20,   Method: Composition-based stats.
 Identities = 48/122 (39%), Positives = 66/122 (54%), Gaps = 35/122 (28%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI---------------------- 39
           +   WVLIG N+LA KL +DDPLEA +LHGG   WG I                      
Sbjct: 358 FVASWVLIGFNLLAKKLKYDDPLEAAQLHGGCGAWGLIFTGLFARKEYVNEIYSGDRPYG 417

Query: 40  ----------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGY 89
                      +Q+ ++ VIVGWV  TMGPLF+ LHK+ +LRI  ++E+ G+D++   G+
Sbjct: 418 LFMGGGGKLLAAQIVQIIVIVGWVTVTMGPLFYGLHKMNLLRISAEDEMAGMDMTRHGGF 477

Query: 90  AY 91
           AY
Sbjct: 478 AY 479

Ammonium transporter probably involved in ammonium uptake from the soil.

Arabidopsis thaliana (taxid: 3702)

>sp|P58905|AMT11_SOLLC Ammonium transporter 1 member 1 OS=Solanum lycopersicum GN=AMT1-1 PE=2 SV=1

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 51/151 (33%), Positives = 73/151 (48%), Gaps = 50/151 (33%)

Query: 7   EPW-----------VLIGLNILAIKLNFDDPLEATRLHGG---WGFI------------- 39
           EPW           VLIG N+LA K  +DDPLEA +LHGG   WG I             
Sbjct: 335 EPWAAIICGFVAALVLIGFNMLAEKFKYDDPLEAAQLHGGCGAWGIIFTGLFAKGEFVDQ 394

Query: 40  ---------------------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEI 78
                                G+ + ++ VI+GWV  TMGPLF+ LHK K+LRI  ++E+
Sbjct: 395 VYPGKPGRPHGLFMGGGGKLLGAHIIQILVIIGWVSATMGPLFYILHKFKLLRISSEDEM 454

Query: 79  TGLDISSDSGYAYVCSSKNHPRFYADYKRVQ 109
            G+D++   G+AY    +  P+     +R++
Sbjct: 455 AGMDLTRHGGFAYY--HEEDPKLGMQMRRIE 483

Ammonium transporter that may be involved in ammonium uptake from the soil.

Solanum lycopersicum (taxid: 4081)

>sp|Q7XQ12|AMT11_ORYSJ Ammonium transporter 1 member 1 OS=Oryza sativa subsp. japonica GN=AMT1-1 PE=2 SV=1

 Score = 90.5 bits (223), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/123 (40%), Positives = 66/123 (53%), Gaps = 35/123 (28%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WG------------------------ 37
           +   WVLIGLN LA +L FDDPLEA +LHGG   WG                        
Sbjct: 338 FVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGILFTALFARQKYVEEIYGAGRPYG 397

Query: 38  -FIG-------SQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGY 89
            F+G       + V ++ VI GWV  TMGPLF+ L KL +LRI  ++E +G+D++   G+
Sbjct: 398 LFMGGGGKLLAAHVIQILVIFGWVSCTMGPLFYGLKKLGLLRISAEDETSGMDLTRHGGF 457

Query: 90  AYV 92
           AYV
Sbjct: 458 AYV 460

Ammonium transporter probably involved in ammonium uptake from the soil.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9SVT8|AMT14_ARATH Ammonium transporter 1 member 4 OS=Arabidopsis thaliana GN=AMT1-4 PE=1 SV=1

 Score = 85.9 bits (211), Expect = 7e-17,   Method: Composition-based stats.
 Identities = 51/129 (39%), Positives = 64/129 (49%), Gaps = 37/129 (28%)

Query: 1   MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI------------------ 39
           +V  +   WVL+G N LA KL FDDPLEA +LHGG   WG I                  
Sbjct: 351 LVCGFVAAWVLMGCNRLAEKLQFDDPLEAAQLHGGCGAWGIIFTGLFAEKRYIAEIFGGD 410

Query: 40  ----------------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDI 83
                            + V ++ VI GWV  TMG LF  LHKLK+LRI  ++EI G+D 
Sbjct: 411 PNRPFGLLMGGGGRLLAAHVVQILVITGWVSVTMGTLFFILHKLKLLRIPAEDEIAGVDP 470

Query: 84  SSDSGYAYV 92
           +S  G AY+
Sbjct: 471 TSHGGLAYM 479

High affinity ammonium transporter in the plasma membrane.

Arabidopsis thaliana (taxid: 3702)

>sp|P54144|AMT11_ARATH Ammonium transporter 1 member 1 OS=Arabidopsis thaliana GN=AMT1-1 PE=1 SV=1

 Score = 82.0 bits (201), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 48/134 (35%), Positives = 65/134 (48%), Gaps = 48/134 (35%)

Query: 7   EPW-----------VLIGLNILAIKLNFDDPLEATRLHGG---WGFI------------- 39
           EPW           VL+G N LA KL +DDPLEA +LHGG   WG I             
Sbjct: 335 EPWAAIICGFVAALVLLGCNKLAEKLKYDDPLEAAQLHGGCGAWGLIFTALFAQEKYLNQ 394

Query: 40  ---------------------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEI 78
                                G+Q+ ++ VI GWV  TMG LF  L K+K+LRI  ++E+
Sbjct: 395 IYGNKPGRPHGLFMGGGGKLLGAQLIQIIVITGWVSATMGTLFFILKKMKLLRISSEDEM 454

Query: 79  TGLDISSDSGYAYV 92
            G+D++   G+AY+
Sbjct: 455 AGMDMTRHGGFAYM 468

High affinity ammonium transporter probably involved in ammonium uptake from the soil, long-distance transport to the shoots and re-uptake of apoplastic ammonium that derives from photorespiration in shoots. Contributes with AMT1-3 to the overall ammonium uptake capacity in roots under nitrogen-deficiency conditions.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K9G1|AMT12_ORYSJ Ammonium transporter 1 member 2 OS=Oryza sativa subsp. japonica GN=AMT1-2 PE=2 SV=1

 Score = 82.0 bits (201), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 46/123 (37%), Positives = 60/123 (48%), Gaps = 36/123 (29%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI---------------------- 39
           +   WVLIGLN LA +L FDDPLEA +LHGG   WG I                      
Sbjct: 338 FVSAWVLIGLNALAARLKFDDPLEAAQLHGGCGAWGVIFTALFARKEYVDQIFGQPGRPY 397

Query: 40  -----------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
                      G+ +  + VI  WV  TM PLF  L+KL +LRI  ++E+ G+D +   G
Sbjct: 398 GLFMGGGGRLLGAHIVVILVIAAWVSFTMAPLFLVLNKLGLLRISAEDEMAGMDQTRHGG 457

Query: 89  YAY 91
           +AY
Sbjct: 458 FAY 460

Ammonium transporter probably involved in ammonium uptake from the soil and ammonium uptake and retrieval in the vascular system.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9LK16|AMT15_ARATH Putative ammonium transporter 1 member 5 OS=Arabidopsis thaliana GN=AMT1-5 PE=3 SV=1

 Score = 80.9 bits (198), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 47/120 (39%), Positives = 60/120 (50%), Gaps = 37/120 (30%)

Query: 10  VLIGLNILAIKLNFDDPLEATRLHGG---WGFI--------------------------- 39
           VLIG N LA  L +DDPLEA +LHGG   WG I                           
Sbjct: 352 VLIGCNKLAELLKYDDPLEAAQLHGGCGAWGLIFVGLFAKEKYINEVYGASPGRHYGLFM 411

Query: 40  -------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYV 92
                  G+Q+ ++ VIVGWV  TMG LF  L KL +LRI E  E+ G+D++   G+AY+
Sbjct: 412 GGGGKLLGAQLVQIIVIVGWVSATMGTLFFILKKLNLLRISEQHEMRGMDLAGHGGFAYI 471

Involved in ammonium transport.

Arabidopsis thaliana (taxid: 3702)

>sp|Q6K9G3|AMT13_ORYSJ Ammonium transporter 1 member 3 OS=Oryza sativa subsp. japonica GN=AMT1-3 PE=2 SV=1

 Score = 80.1 bits (196), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 45/135 (33%), Positives = 62/135 (45%), Gaps = 36/135 (26%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI---------------------- 39
           +   WVLIG N L++ L FDDPLEAT+LH G   WG I                      
Sbjct: 340 FVSAWVLIGCNKLSLILKFDDPLEATQLHAGCGAWGIIFTALFARREYVELIYGVPGRPY 399

Query: 40  -----------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
                       + + ++ VIVGWV  TMG LF+ LH+  +LR+    E+ G+D +   G
Sbjct: 400 GLFMGGGGRLLAAHIVQILVIVGWVSATMGTLFYVLHRFGLLRVSPATEMEGMDPTCHGG 459

Query: 89  YAYVCSSKNHPRFYA 103
           + YV   +   R  A
Sbjct: 460 FGYVDEDEGERRVRA 474

Ammonium transporter probably involved in ammonium uptake from the soil.

Oryza sativa subsp. japonica (taxid: 39947)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
297745906	445	unnamed protein product [Vitis vinifera]	0.929	0.238	0.566	1e-32
377656735	466	AMT1;5 [Malus hupehensis var. mengshanen	0.938	0.229	0.476	1e-30
225434604	465	PREDICTED: ammonium transporter 1 member	0.929	0.227	0.489	2e-30
147833023	1819	hypothetical protein VITISV_028790 [Viti	0.973	0.061	0.480	1e-29
377656737	466	AMT1;6 [Malus hupehensis var. mengshanen	0.938	0.229	0.469	1e-28
224106263	465	ammonium transporter [Populus trichocarp	0.921	0.225	0.5	2e-28
255569331	466	ammonium transporter, putative [Ricinus	0.921	0.225	0.493	2e-27
350535841	460	ammonium transporter 1 member 3 [Solanum	0.894	0.221	0.454	1e-22
407751529	462	ammonium transporter 1;3 [Alternanthera	0.964	0.238	0.423	5e-21
398025461	412	putative ammonium transporter AMT1;3, pa	0.964	0.266	0.423	9e-21

>gi|297745906|emb|CBI15962.3| unnamed protein product [Vitis vinifera]

 Score =  143 bits (361), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 72/127 (56%), Positives = 84/127 (66%), Gaps = 21/127 (16%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG--------------------WGFIGSQVT 44
           +F  WVLIGLNILA+KL FDDPLEAT+LHGG                    WG IG Q  
Sbjct: 316 FFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLPYGLFMGGGWGLIGCQAV 375

Query: 45  ELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC-SSKNHPRFYA 103
           E+  I+ WV  TMGPLF+ALHKLK+LRI  +EE+ GLDISS  GYAYV    + HPRFYA
Sbjct: 376 EVLAIICWVSITMGPLFYALHKLKILRISTEEEVAGLDISSHGGYAYVAHPDEGHPRFYA 435

Query: 104 DYKRVQE 110
           DY R+Q+
Sbjct: 436 DYMRLQD 442

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377656735|gb|AFB73922.1| AMT1;5 [Malus hupehensis var. mengshanensis]

 Score =  137 bits (344), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 70/147 (47%), Positives = 86/147 (58%), Gaps = 40/147 (27%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG----------------------------- 35
           +F  WVLIGLNILA+KL FDDPLEA +LHGG                             
Sbjct: 318 FFAAWVLIGLNILALKLQFDDPLEAAQLHGGCGAWGLIFTGLFAKEKFVVQAYNAGAVGT 377

Query: 36  -----------WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDIS 84
                      WG +G+QV EL  IVGWV  TMGPLF+ LHKL++LRI  D+EI GLD+S
Sbjct: 378 VRPYGLFMGGGWGLLGAQVVELLAIVGWVSLTMGPLFYTLHKLRILRISVDDEIAGLDVS 437

Query: 85  SDSGYAYVCSSKNHPRFYADYKRVQEN 111
           S  G+AYV + ++  RFYADY R+Q+N
Sbjct: 438 SHGGHAYVHAEEHQRRFYADYVRIQDN 464

Source: Malus hupehensis var. mengshanensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434604|ref|XP_002278495.1| PREDICTED: ammonium transporter 1 member 3 [Vitis vinifera]

 Score =  135 bits (341), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 72/147 (48%), Positives = 84/147 (57%), Gaps = 41/147 (27%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG----------------------------- 35
           +F  WVLIGLNILA+KL FDDPLEAT+LHGG                             
Sbjct: 316 FFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLFAKEEFVVQAYDSGESGV 375

Query: 36  -----------WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDIS 84
                      WG IG Q  E+  I+ WV  TMGPLF+ALHKLK+LRI  +EE+ GLDIS
Sbjct: 376 VRPYGLFMGGGWGLIGCQAVEVLAIICWVSITMGPLFYALHKLKILRISTEEEVAGLDIS 435

Query: 85  SDSGYAYVC-SSKNHPRFYADYKRVQE 110
           S  GYAYV    + HPRFYADY R+Q+
Sbjct: 436 SHGGYAYVAHPDEGHPRFYADYMRLQD 462

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|147833023|emb|CAN61893.1| hypothetical protein VITISV_028790 [Vitis vinifera]

 Score =  133 bits (335), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 73/152 (48%), Positives = 86/152 (56%), Gaps = 41/152 (26%)

Query: 1    MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGG------------------------- 35
            +V  +F  WVLIGLNILA+KL FDDPLEAT+LHGG                         
Sbjct: 1666 IVCGFFSAWVLIGLNILALKLGFDDPLEATQLHGGCGAWGLIFTGLFAKEEFVVQAYDSG 1725

Query: 36   ---------------WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITG 80
                           WG IG Q  E+  I+ WV  TMGPLF+ALHKLK+LRI  +EE+ G
Sbjct: 1726 ESGVVRPYGLFMGGGWGLIGCQAVEVLAIICWVSITMGPLFYALHKLKILRISTEEEVAG 1785

Query: 81   LDISSDSGYAYVC-SSKNHPRFYADYKRVQEN 111
            LDISS  GYAYV    + HPRFYADY R+Q+ 
Sbjct: 1786 LDISSHGGYAYVAHPDEGHPRFYADYMRLQDQ 1817

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|377656737|gb|AFB73923.1| AMT1;6 [Malus hupehensis var. mengshanensis]

 Score =  130 bits (327), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 69/147 (46%), Positives = 83/147 (56%), Gaps = 40/147 (27%)

Query: 5   YFEPWVLIGLNILAIKLNFDDPLEATRLHGG----------------------------- 35
           +F   VLIG NILAIKL FDDPLEAT+LHGG                             
Sbjct: 318 FFAACVLIGFNILAIKLQFDDPLEATQLHGGCGAWGLIFTGLFAKEEFVVQAYNAGAVGT 377

Query: 36  -----------WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDIS 84
                      WG +G+QV EL  I GWV  TMGPLF+ LHKL++LRI  D+EI GLD+S
Sbjct: 378 VRPYGLFMGGGWGLLGAQVAELLAIAGWVSLTMGPLFYTLHKLRILRISVDDEIAGLDVS 437

Query: 85  SDSGYAYVCSSKNHPRFYADYKRVQEN 111
           S  G+AYV + ++  RFYADY R+Q N
Sbjct: 438 SHGGHAYVHAEEHQRRFYADYVRIQGN 464

Source: Malus hupehensis var. mengshanensis

Species: Malus hupehensis

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224106263|ref|XP_002314106.1| ammonium transporter [Populus trichocarpa] gi|222850514|gb|EEE88061.1| ammonium transporter [Populus trichocarpa]

 Score =  129 bits (324), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 73/146 (50%), Positives = 81/146 (55%), Gaps = 41/146 (28%)

Query: 9   WVLIGLNILAIKLNFDDPLEATRLHGG---WGFIGS------------------------ 41
           WVLIGLN+LA+KL FDDPLEAT+LHGG   WG I +                        
Sbjct: 319 WVLIGLNVLALKLQFDDPLEATQLHGGCGAWGLIFTGLFAKKEFVIQVYNSGEAGVVRPY 378

Query: 42  -------------QVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
                        QV EL  IV WV  TMGP+F AL KLKMLRI  DEE+ GLDISS  G
Sbjct: 379 GLLLGGGWGLIGCQVVELLAIVAWVSITMGPVFFALDKLKMLRISIDEEVAGLDISSHGG 438

Query: 89  YAYVC-SSKNHPRFYADYKRVQENNH 113
           YAY     +NHPRFYADY  +Q  NH
Sbjct: 439 YAYTTHPEENHPRFYADYMPIQGRNH 464

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255569331|ref|XP_002525633.1| ammonium transporter, putative [Ricinus communis] gi|223535069|gb|EEF36751.1| ammonium transporter, putative [Ricinus communis]

 Score =  126 bits (316), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 72/146 (49%), Positives = 83/146 (56%), Gaps = 41/146 (28%)

Query: 9   WVLIGLNILAIKLNFDDPLEATRLHGG---WGFI-------------------------- 39
           W+LIGLNILA+KL FDDPLEAT+LHGG   WG I                          
Sbjct: 320 WILIGLNILALKLQFDDPLEATQLHGGCGAWGLIFTGLFAKEEFVIQAYESGESGVVRPY 379

Query: 40  -----------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
                      GSQV  + VI  WV  TMGPLF+ALHKL++LRI  DEE+ GLDISS  G
Sbjct: 380 GILLGGGWGLIGSQVIAVLVIACWVSVTMGPLFYALHKLRILRISIDEEVAGLDISSHGG 439

Query: 89  YAYVC-SSKNHPRFYADYKRVQENNH 113
           YAY+  S +N PR YADY  VQ  N+
Sbjct: 440 YAYIPHSEENQPRLYADYMHVQAQNY 465

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|350535841|ref|NP_001234216.1| ammonium transporter 1 member 3 [Solanum lycopersicum] gi|22001522|sp|Q9FVN0.1|AMT13_SOLLC RecName: Full=Ammonium transporter 1 member 3; AltName: Full=LeAMT1;3 gi|9992844|gb|AAG11397.1|AF118858_1 ammonium transporter [Solanum lycopersicum]

 Score =  110 bits (275), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 65/143 (45%), Positives = 78/143 (54%), Gaps = 41/143 (28%)

Query: 9   WVLIGLNILAIKLNFDDPLEATRLHGG---WGFI-------------------------- 39
           WVLIGLNILA+K  FDDPLEA +LHGG   WG I                          
Sbjct: 317 WVLIGLNILALKFKFDDPLEAAQLHGGCGAWGLIFTGLFAKEEFVLQAYNSGKTQIIRPS 376

Query: 40  -----------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSG 88
                      G+Q+ EL  IV WV  TMGPLF+ L KL +LRI  DEE+ GLDISS  G
Sbjct: 377 GLILGGGWGLFGAQIVELLSIVVWVSLTMGPLFYLLQKLGILRISSDEEVAGLDISSHGG 436

Query: 89  YAYVCSS-KNHPRFYADYKRVQE 110
           YAY  S  +++ RFY +Y R+Q+
Sbjct: 437 YAYDASQEESNARFYGEYLRMQQ 459

Source: Solanum lycopersicum

Species: Solanum lycopersicum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|407751529|gb|AFU34590.1| ammonium transporter 1;3 [Alternanthera philoxeroides]

 Score =  105 bits (261), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 78/151 (51%), Gaps = 41/151 (27%)

Query: 1   MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI------------------ 39
           ++  +   WVLIGLN++A+KL+FDDPLEA +LHGG   WG I                  
Sbjct: 312 IICGFVAAWVLIGLNMVALKLHFDDPLEAVQLHGGCGAWGLIFTGLFAKEEFIIQAYDSG 371

Query: 40  -------------------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITG 80
                               +Q  EL  IV WV  TMGPLF+ LHKLK+LRI  DEE+ G
Sbjct: 372 KGGISRSYGLLLGGGWGLFCAQAIELVAIVAWVSVTMGPLFYILHKLKVLRISIDEEVAG 431

Query: 81  LDISSDSGYAYVCSSKN-HPRFYADYKRVQE 110
           LDISS  GYAY     +  P  Y DY R+Q 
Sbjct: 432 LDISSHGGYAYHNQEDDERPLRYKDYIRMQN 462

Source: Alternanthera philoxeroides

Species: Alternanthera philoxeroides

Genus: Alternanthera

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|398025461|gb|AFO70202.1| putative ammonium transporter AMT1;3, partial [Alternanthera philoxeroides]

 Score =  103 bits (258), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 64/151 (42%), Positives = 78/151 (51%), Gaps = 41/151 (27%)

Query: 1   MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHGG---WGFI------------------ 39
           ++  +   WVLIGLN++A+KL+FDDPLEA +LHGG   WG I                  
Sbjct: 262 IICGFVAAWVLIGLNMVALKLHFDDPLEAVQLHGGCGAWGLIFTGLFAKEEFIIQAYDSG 321

Query: 40  -------------------GSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITG 80
                               +Q  EL  IV WV  TMGPLF+ LHKLK+LRI  DEE+ G
Sbjct: 322 KGGISRSYGLLLGGGWGLFCAQAIELVAIVAWVSVTMGPLFYILHKLKVLRISIDEEVAG 381

Query: 81  LDISSDSGYAYVCSSKN-HPRFYADYKRVQE 110
           LDISS  GYAY     +  P  Y DY R+Q 
Sbjct: 382 LDISSHGGYAYHNQEDDERPLRYKDYIRMQN 412

Source: Alternanthera philoxeroides

Species: Alternanthera philoxeroides

Genus: Alternanthera

Family: Amaranthaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	114
UNIPROTKB|Q9FVN0	460	AMT1-3 "Ammonium transporter 1	0.692	0.171	0.562	1.6e-29
UNIPROTKB|O04161	514	AMT1-2 "Ammonium transporter 1	0.692	0.153	0.419	5.7e-23
TAIR|locus:2010791	514	AMT1;2 "ammonium transporter 1	0.561	0.124	0.421	3.1e-21
UNIPROTKB|P58905	488	AMT1-1 "Ammonium transporter 1	0.649	0.151	0.381	2.7e-20
TAIR|locus:2087168	496	AMT1;5 "ammonium transporter 1	0.517	0.118	0.474	8.2e-18
TAIR|locus:2140877	501	AMT1;1 "ammonium transporter 1	0.666	0.151	0.368	8.9e-18
UNIPROTKB|Q6K9G3	498	AMT1-3 "Ammonium transporter 1	0.614	0.140	0.357	5.4e-17
TAIR|locus:2087173	498	AMT1;3 "ammonium transporter 1	0.517	0.118	0.457	5.9e-17
TAIR|locus:2117758	504	AMT1;4 "ammonium transporter 1	0.535	0.121	0.5	1.4e-09
UNIPROTKB|Q7XQ12	498	AMT1-1 "Ammonium transporter 1	0.517	0.118	0.457	3.7e-09

UNIPROTKB|Q9FVN0 AMT1-3 "Ammonium transporter 1 member 3" [Solanum lycopersicum (taxid:4081)]

 Score = 226 (84.6 bits), Expect = 1.6e-29, Sum P(2) = 1.6e-29
 Identities = 45/80 (56%), Positives = 56/80 (70%)

Query:    32 LHGGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY 91
             L GGWG  G+Q+ EL  IV WV  TMGPLF+ L KL +LRI  DEE+ GLDISS  GYAY
Sbjct:   380 LGGGWGLFGAQIVELLSIVVWVSLTMGPLFYLLQKLGILRISSDEEVAGLDISSHGGYAY 439

Query:    92 VCSSK-NHPRFYADYKRVQE 110
               S + ++ RFY +Y R+Q+
Sbjct:   440 DASQEESNARFYGEYLRMQQ 459

GO:0015696 "ammonium transport" evidence=IGI

UNIPROTKB|O04161 AMT1-2 "Ammonium transporter 1 member 2" [Solanum lycopersicum (taxid:4081)]

 Score = 178 (67.7 bits), Expect = 5.7e-23, Sum P(2) = 5.7e-23
 Identities = 34/81 (41%), Positives = 51/81 (62%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC 93
             GG   +G+QV ++ VI+GWV  TMGPLF+ LHK K+LRI  D+E  G+D++   G+AY+ 
Sbjct:   419 GGGKLLGAQVIQVVVIIGWVSVTMGPLFYLLHKFKLLRISRDDETAGMDLTRHGGFAYIY 478

Query:    94 SSKNHPRFYADYK--RVQENN 112
               ++       +K  RV+  N
Sbjct:   479 HDEDEGSSMPGFKMTRVEPTN 499

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2010791 AMT1;2 "ammonium transporter 1;2" [Arabidopsis thaliana (taxid:3702)]

 Score = 162 (62.1 bits), Expect = 3.1e-21, Sum P(2) = 3.1e-21
 Identities = 27/64 (42%), Positives = 45/64 (70%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC 93
             GG   + +Q+ ++ VIVGWV  TMGPLF+ LHK+ +LRI  ++E+ G+D++   G+AY  
Sbjct:   422 GGGKLLAAQIVQIIVIVGWVTVTMGPLFYGLHKMNLLRISAEDEMAGMDMTRHGGFAYAY 481

Query:    94 SSKN 97
             + ++
Sbjct:   482 NDED 485

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS

GO:0015695 "organic cation transport" evidence=IEA;ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0072488 "ammonium transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0015696 "ammonium transport" evidence=IMP

GO:0015843 "methylammonium transport" evidence=IMP

GO:0010264 "myo-inositol hexakisphosphate biosynthetic process" evidence=RCA

UNIPROTKB|P58905 AMT1-1 "Ammonium transporter 1 member 1" [Solanum lycopersicum (taxid:4081)]

 Score = 168 (64.2 bits), Expect = 2.7e-20, Sum P(2) = 2.7e-20
 Identities = 29/76 (38%), Positives = 49/76 (64%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC 93
             GG   +G+ + ++ VI+GWV  TMGPLF+ LHK K+LRI  ++E+ G+D++   G+AY  
Sbjct:   410 GGGKLLGAHIIQILVIIGWVSATMGPLFYILHKFKLLRISSEDEMAGMDLTRHGGFAYY- 468

Query:    94 SSKNHPRFYADYKRVQ 109
               +  P+     +R++
Sbjct:   469 -HEEDPKLGMQMRRIE 483

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2087168 AMT1;5 "ammonium transporter 1;5" [Arabidopsis thaliana (taxid:3702)]

 Score = 153 (58.9 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
 Identities = 28/59 (47%), Positives = 40/59 (67%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYV 92
             GG   +G+Q+ ++ VIVGWV  TMG LF  L KL +LRI E  E+ G+D++   G+AY+
Sbjct:   413 GGGKLLGAQLVQIIVIVGWVSATMGTLFFILKKLNLLRISEQHEMRGMDLAGHGGFAYI 471

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IDA

GO:0015695 "organic cation transport" evidence=ISS;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015696 "ammonium transport" evidence=IDA

TAIR|locus:2140877 AMT1;1 "ammonium transporter 1;1" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 8.9e-18, Sum P(2) = 8.9e-18
 Identities = 28/76 (36%), Positives = 46/76 (60%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC 93
             GG   +G+Q+ ++ VI GWV  TMG LF  L K+K+LRI  ++E+ G+D++   G+AY+ 
Sbjct:   410 GGGKLLGAQLIQIIVITGWVSATMGTLFFILKKMKLLRISSEDEMAGMDMTRHGGFAYMY 469

Query:    94 SSKNHPRFYADYKRVQ 109
                +        +RV+
Sbjct:   470 FDDDESHKAIQLRRVE 485

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IMP;IDA

GO:0015695 "organic cation transport" evidence=ISS;IMP;IDA

GO:0016020 "membrane" evidence=ISS

GO:0015696 "ammonium transport" evidence=RCA;IDA

GO:0051258 "protein polymerization" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0080167 "response to karrikin" evidence=IEP

GO:0009737 "response to abscisic acid stimulus" evidence=IDA

GO:0010311 "lateral root formation" evidence=IMP

GO:0080181 "lateral root branching" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0001666 "response to hypoxia" evidence=RCA

GO:0006612 "protein targeting to membrane" evidence=RCA

GO:0006820 "anion transport" evidence=RCA

GO:0006862 "nucleotide transport" evidence=RCA

GO:0006888 "ER to Golgi vesicle-mediated transport" evidence=RCA

GO:0006944 "cellular membrane fusion" evidence=RCA

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

GO:0010310 "regulation of hydrogen peroxide metabolic process" evidence=RCA

GO:0010363 "regulation of plant-type hypersensitive response" evidence=RCA

GO:0015802 "basic amino acid transport" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

GO:0043069 "negative regulation of programmed cell death" evidence=RCA

GO:0043090 "amino acid import" evidence=RCA

GO:0043269 "regulation of ion transport" evidence=RCA

UNIPROTKB|Q6K9G3 AMT1-3 "Ammonium transporter 1 member 3" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 131 (51.2 bits), Expect = 5.4e-17, Sum P(2) = 5.4e-17
 Identities = 25/70 (35%), Positives = 39/70 (55%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC 93
             GG   + + + ++ VIVGWV  TMG LF+ LH+  +LR+    E+ G+D +   G+ YV 
Sbjct:   405 GGGRLLAAHIVQILVIVGWVSATMGTLFYVLHRFGLLRVSPATEMEGMDPTCHGGFGYVD 464

Query:    94 SSKNHPRFYA 103
               +   R  A
Sbjct:   465 EDEGERRVRA 474

GO:0015696 "ammonium transport" evidence=IGI

TAIR|locus:2087173 AMT1;3 "ammonium transporter 1;3" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 5.9e-17, Sum P(2) = 5.9e-17
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYV 92
             GG   +G+Q+ ++ VIVGWV  TMG LF  L +L +LRI E  E+ G+D++   G+AY+
Sbjct:   414 GGGKLLGAQLVQILVIVGWVSATMGTLFFILKRLNLLRISEQHEMQGMDMTRHGGFAYI 472

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IMP

GO:0015695 "organic cation transport" evidence=ISS;IMP

GO:0016020 "membrane" evidence=IEA;ISS

GO:0015696 "ammonium transport" evidence=IMP

GO:0010311 "lateral root formation" evidence=IMP

GO:0080181 "lateral root branching" evidence=IMP

TAIR|locus:2117758 AMT1;4 "ammonium transporter 1;4" [Arabidopsis thaliana (taxid:3702)]

 Score = 148 (57.2 bits), Expect = 1.4e-09, P = 1.4e-09
 Identities = 31/62 (50%), Positives = 41/62 (66%)

Query:    32 LHGGWG-FIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYA 90
             L GG G  + + V ++ VI GWV  TMG LF  LHKLK+LRI  ++EI G+D +S  G A
Sbjct:   418 LMGGGGRLLAAHVVQILVITGWVSVTMGTLFFILHKLKLLRIPAEDEIAGVDPTSHGGLA 477

Query:    91 YV 92
             Y+
Sbjct:   478 YM 479

GO:0005576 "extracellular region" evidence=ISM

GO:0006810 "transport" evidence=ISS

GO:0008519 "ammonium transmembrane transporter activity" evidence=IEA;ISS;IDA

GO:0015695 "organic cation transport" evidence=ISS;IMP;IDA

GO:0016020 "membrane" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=IDA

GO:0015398 "high affinity secondary active ammonium transmembrane transporter activity" evidence=IMP

GO:0072488 "ammonium transmembrane transport" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

UNIPROTKB|Q7XQ12 AMT1-1 "Ammonium transporter 1 member 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 144 (55.7 bits), Expect = 3.7e-09, P = 3.7e-09
 Identities = 27/59 (45%), Positives = 40/59 (67%)

Query:    34 GGWGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYV 92
             GG   + + V ++ VI GWV  TMGPLF+ L KL +LRI  ++E +G+D++   G+AYV
Sbjct:   402 GGGKLLAAHVIQILVIFGWVSCTMGPLFYGLKKLGLLRISAEDETSGMDLTRHGGFAYV 460

GO:0015696 "ammonium transport" evidence=IGI

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00024113001	SubName- Full=Chromosome chr6 scaffold_3, whole genome shotgun sequence; (465 aa)
		(Vitis vinifera)
Predicted Functional Partners:
	GSVIVG00028171001	SubName- Full=Chromosome chr7 scaffold_42, whole genome shotgun sequence; (198 aa)	•		•				•		0.900
	GSVIVG00038598001	SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence (Chromosome chr16 scaf [...] (79 aa)	•						•		0.798
	GSVIVG00007383001	SubName- Full=Chromosome chr3 scaffold_95, whole genome shotgun sequence (Chromosome chr16 scaf [...] (79 aa)	•						•		0.798
	GSVIVG00000595001	SubName- Full=Chromosome chr8 scaffold_106, whole genome shotgun sequence; (351 aa)	•						•		0.603
	GSVIVG00035063001	SubName- Full=Chromosome chr1 scaffold_75, whole genome shotgun sequence; (127 aa)	•						•		0.514
	GSVIVG00018944001	RecName- Full=Citrate synthase; (466 aa)							•		0.446
	GSVIVG00036600001	SubName- Full=Chromosome chr3 scaffold_8, whole genome shotgun sequence; (595 aa)							•		0.412

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	114
TIGR00836	403	TIGR00836, amt, ammonium transporter	2e-12
pfam00909	399	pfam00909, Ammonium_transp, Ammonium Transporter F	3e-08
TIGR03644	404	TIGR03644, marine_trans_1, probable ammonium trans	1e-04

>gnl|CDD|233145 TIGR00836, amt, ammonium transporter

 Score = 61.5 bits (150), Expect = 2e-12
 Identities = 27/112 (24%), Positives = 42/112 (37%), Gaps = 29/112 (25%)

Query: 9   WVLIGLNILAIKLNFDDPLEATRLHGGWGFIGS--------------------------- 41
              + ++ L  KL  DDPL+A  +HG  G  G                            
Sbjct: 292 LCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQL 351

Query: 42  --QVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY 91
             Q+  ++ I+ W       +   L K   LR+ E+EE  GLD++    +AY
Sbjct: 352 GVQLIGIAAIIAWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEFAY 403

The Ammonium Transporter (Amt) Family (TC 2.A.49) All functionally characterized members of the Amt family are ammonia or ammonium uptake transporters. Some, but not others, also transport methylammonium. The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf [Transport and binding proteins, Cations and iron carrying compounds]. Length = 403

>gnl|CDD|216185 pfam00909, Ammonium_transp, Ammonium Transporter Family

 Score = 49.6 bits (119), Expect = 3e-08
 Identities = 27/113 (23%), Positives = 40/113 (35%), Gaps = 30/113 (26%)

Query: 9   WVLIGLNILAIKLNFDDPLEATRLHGGWGFIG---------------------------- 40
             ++G   L  KL  DDPL+   +HG  G  G                            
Sbjct: 287 VSVLGYKKLKEKLGIDDPLDVFPVHGVGGIWGGIAVGIFAAPYVPTSGIYGGLLGGGFKQ 346

Query: 41  --SQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY 91
              Q+  ++VI+ +       L   L     LR+ E+EE  GLD++     AY
Sbjct: 347 LGVQLIGIAVILAYAFGVTFILGLLLGLTLGLRVSEEEEEVGLDVAEHGETAY 399

Length = 399

>gnl|CDD|234292 TIGR03644, marine_trans_1, probable ammonium transporter, marine subtype

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 26/90 (28%), Positives = 42/90 (46%), Gaps = 15/90 (16%)

Query: 10  VLIGLNILAI-KLNFDDPLEATRLHGGWGFIG--------------SQVTELSVIVGWVR 54
           V++  +I+ + KL  DDP+ A  +HG  G  G              +Q+   + I  WV 
Sbjct: 305 VIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFAWVF 364

Query: 55  ETMGPLFHALHKLKMLRILEDEEITGLDIS 84
            T   ++  L     +R+ E+EE  GLDI+
Sbjct: 365 VTSLIVWFILKATMGIRVSEEEEYEGLDIA 394

Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment. Length = 404

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	114
COG0004	409	AmtB Ammonia permease [Inorganic ion transport and	99.96
KOG0682	500	consensus Ammonia permease [Inorganic ion transpor	99.95
TIGR03644	404	marine_trans_1 probable ammonium transporter, mari	99.94
PRK10666	428	ammonium transporter; Provisional	99.93
TIGR00836	403	amt ammonium transporter. The mechanism of energy	99.93
PF00909	399	Ammonium_transp: Ammonium Transporter Family; Inte	99.92
KOG3796	442	consensus Ammonium transporter RHBG [Intracellular	93.43

>COG0004 AmtB Ammonia permease [Inorganic ion transport and metabolism]

Probab=99.96  E-value=3.5e-29  Score=205.26  Aligned_cols=96  Identities=26%  Similarity=0.291  Sum_probs=89.8

Q ss_pred             CeecchhHHHHHHHHH-HHHHhCCCCccccccccc---------------------------CchhHHHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG---------------------------GWGFIGSQVTELSVIVGW   52 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg---------------------------~~~ql~~Ql~g~~~i~~w   52 (114)
                      ++||+++|++|+++.+ +++|+|+|||+|+|+|||                           +++|++.|++|++++.+|
T Consensus       284 ~iiGii~g~i~~~a~~~lk~~l~~DD~ld~f~vHGvgGi~G~i~~GiFa~~~~~~~~G~~~~~~~~l~~Q~~~v~~~~~~  363 (409)
T COG0004         284 LIIGLIAGVICYFAVKLLKKKLGVDDALDVFGVHGVGGIVGAILTGIFAAPAVGGGGGLFYGGGVQLGVQLLGVLVTIVY  363 (409)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhcCCCCcccceeccchhhHHHHHHHHHhcCccccccCccccccHHHHHHHHHHHHHHHHH
Confidence            4789999999999887 667799999999999999                           248999999999999999


Q ss_pred             HHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccCCCC
Q 046160           53 VRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSK   96 (114)
Q Consensus        53 s~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~   96 (114)
                      ++++|+++++++|++.+||||+|||++|||.+||||+||++.+.
T Consensus       364 ~~v~t~ii~~vl~~~~gLRvs~eeE~~GlD~~~Hge~aY~~~~~  407 (409)
T COG0004         364 AFVVTFIILKVLKLIIGLRVSEEEELEGLDISEHGESAYSEEEA  407 (409)
T ss_pred             HHHHHHHHHHHHHhccCCCCCHHHHhhCCChHHhcccccccccc
Confidence            99999999999999999999999999999999999999998664

>KOG0682 consensus Ammonia permease [Inorganic ion transport and metabolism]

Probab=99.95  E-value=9.3e-29  Score=205.87  Aligned_cols=98  Identities=29%  Similarity=0.432  Sum_probs=93.4

Q ss_pred             CeecchhHHHHHHHHHHHHHhCCCCccccccccc------------------------------------CchhHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHG------------------------------------GWGFIGSQVT   44 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg------------------------------------~~~ql~~Ql~   44 (114)
                      +++|+++|++|+++.++++|+|||||||+|++||                                    +++||++|++
T Consensus       315 iviG~va~~~~~~~~kL~~~lkvDDpl~~f~~Hgv~G~wG~I~~glFa~~~v~~~~~~~~~~~~G~~~~~~~kqLg~Qla  394 (500)
T KOG0682|consen  315 IVIGAVAGLVCNAANKLKERLKVDDPLDAFAVHGVGGIWGLIFTGLFAHDDVAAMDGTTIARISGLWMGHGFKQLGYQLA  394 (500)
T ss_pred             HHHhHHHHHHHHHHHHHHHHhcCCcHHHHHHHhccccchhhheeeeeccCccccccCCCccCCCceeecchHHHHHHHHH
Confidence            4789999999999999999999999999999999                                    4799999999


Q ss_pred             HHHHHHHHHHHHHHHHHHHHhhhcc-ccCChHHHhcccchhhcccccccCCCCCC
Q 046160           45 ELSVIVGWVRETMGPLFHALHKLKM-LRILEDEEITGLDISSDSGYAYVCSSKNH   98 (114)
Q Consensus        45 g~~~i~~ws~~~t~ii~~~l~~~~~-LRv~~e~E~~GLD~~~hge~ay~~~~~~~   98 (114)
                      +++++.+|++++|++++++++|+++ ||||+|+|+.|+|..||||.+|+..+.++
T Consensus       395 ~i~ai~~ws~~~t~iilf~l~kip~~LRvs~e~E~~G~D~~~hGe~ay~~~~~~~  449 (500)
T KOG0682|consen  395 GILAIAAWSAVVTFIILFLLNKIPLGLRVSEEEEELGMDATEHGEAAYDYHESTR  449 (500)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhhccceeecCHHHHhcCCCHhhhhhhhcchhhccc
Confidence            9999999999999999999999999 99999999999999999999998877644

>TIGR03644 marine_trans_1 probable ammonium transporter, marine subtype

Probab=99.94  E-value=2.6e-27  Score=194.66  Aligned_cols=93  Identities=29%  Similarity=0.345  Sum_probs=89.0

Q ss_pred             CeecchhHHHHHHHHHHHHHhCCCCccccccccc--------------CchhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046160            1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHG--------------GWGFIGSQVTELSVIVGWVRETMGPLFHALHK   66 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg--------------~~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~   66 (114)
                      ++||+++|++|+++.++++|+|||||+|++++||              +..|++.|++|++++++|++++|+++++++|+
T Consensus       297 ~iiG~iag~v~~~~~~~~~~~~iDD~~~~~~vHg~~Gi~G~i~~glf~~~~~l~~Ql~g~~~~~~~~~~~s~~~~~il~~  376 (404)
T TIGR03644       297 TLIGAVGGVIVVFSIVLLDKLKIDDPVGAISVHGVAGIWGTLVVPITNGDASFGAQLIGAATIFAWVFVTSLIVWFILKA  376 (404)
T ss_pred             HHHHHHHHHHHHHHHHHHHhCCCCCCcCchHhhhHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4789999999999999999999999999999999              34799999999999999999999999999999


Q ss_pred             hccccCChHHHhcccchhhcccccccC
Q 046160           67 LKMLRILEDEEITGLDISSDSGYAYVC   93 (114)
Q Consensus        67 ~~~LRv~~e~E~~GLD~~~hge~ay~~   93 (114)
                      +.+||+++|+|..|+|.++|||++|++
T Consensus       377 ~~~lRv~~e~E~~GlD~~~hg~~ay~e  403 (404)
T TIGR03644       377 TMGIRVSEEEEYEGLDIAECGMEAYPE  403 (404)
T ss_pred             cccccCCHHHHHcCCCHHHhCcccCCC
Confidence            999999999999999999999999975

Members of this protein family are well conserved subclass of putative ammonimum transporters, belonging to the much broader set of ammonium/methylammonium transporter described by TIGR00836. Species with this transporter tend to be marine bacteria. Partial phylogenetic profiling (PPP) picks a member of this protein family as the single best-scoring protein vs. a reference profile for the marine environment Genome Property for a large number of different query genomes. This finding by PPP suggests that this transporter family represents an important adaptation to the marine environment.

>PRK10666 ammonium transporter; Provisional

Probab=99.93  E-value=1.6e-26  Score=191.16  Aligned_cols=93  Identities=22%  Similarity=0.232  Sum_probs=85.3

Q ss_pred             CeecchhHHHHHHHHH-HHHHhCCCCccccccccc------------------C----------chhHHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG------------------G----------WGFIGSQVTELSVIVG   51 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg------------------~----------~~ql~~Ql~g~~~i~~   51 (114)
                      ++||+++|++|+++.+ +++|+|||||+|+++|||                  +          +.|++.|++|++++++
T Consensus       307 ~iiG~vag~v~~~~~~~l~~~~~iDD~~~a~~vHgv~Gi~G~l~~glfa~~~~~~~~~~~g~~~~~ql~~Ql~g~~~~~~  386 (428)
T PRK10666        307 LIIGVVAGLAGLWGVTMLKRWLRVDDPCDVFGVHGVCGIVGCILTGIFAASSLGGVGYAEGVTMGHQVLVQLESIAITIV  386 (428)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCCCCCcCccHhhhHhHHHHHHHHHHhhchhccCccccCccccHHHHHHHHHHHHHHHH
Confidence            4789999999988765 555699999999999999                  0          2699999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccC
Q 046160           52 WVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVC   93 (114)
Q Consensus        52 ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~   93 (114)
                      |++++|+++++++|++.+||+++|+|+.|+|.+||||++|++
T Consensus       387 ~~~~~t~ii~~il~~~~~lRvs~e~E~~GlD~~~hg~~ay~~  428 (428)
T PRK10666        387 WSGVVAFIGYKLADLTVGLRVPEEQEREGLDVNSHGENAYNA  428 (428)
T ss_pred             HHHHHHHHHHHHHHhcccCcCCHHHHHhCCChhHhCccccCC
Confidence            999999999999999999999999999999999999999964

>TIGR00836 amt ammonium transporter

Probab=99.93  E-value=1.9e-26  Score=189.52  Aligned_cols=91  Identities=29%  Similarity=0.414  Sum_probs=85.8

Q ss_pred             CeecchhHHHHHHHHH-HHHHhCCCCccccccccc-----------------------------CchhHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG-----------------------------GWGFIGSQVTELSVIV   50 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg-----------------------------~~~ql~~Ql~g~~~i~   50 (114)
                      ++||+++|++|++..+ +++|+|||||+|++++||                             ++.|+++|++|+++++
T Consensus       283 ~viG~iag~~~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~g~~~~~~~~~l~~Ql~g~~~~~  362 (403)
T TIGR00836       283 IIIGLVAGVLCYLAVSKLKKKLKIDDPLDAFAVHGVGGIWGLIATGLFAAPKVGGVGTGGLLGGNGKQLGVQLIGIAAII  362 (403)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcCCCCCcccchhhhhhHHHHHHHHHHhcccccccccCCccccCcHHHHHHHHHHHHHHH
Confidence            4789999999988886 888999999999999999                             1279999999999999


Q ss_pred             HHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccc
Q 046160           51 GWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY   91 (114)
Q Consensus        51 ~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay   91 (114)
                      +|++++|+++++++|++.+||+++|+|+.|+|.++|||++|
T Consensus       363 ~~s~~~~~ii~~il~~~~~lRv~~e~E~~GlD~~~hg~~ay  403 (403)
T TIGR00836       363 AWAFVVTFIILKILDKTIGLRVSEEEEKIGLDLAEHGEFAY  403 (403)
T ss_pred             HHHHHHHHHHHHHHHhcccccCCHHHHHhCCChhhhCcccC
Confidence            99999999999999999999999999999999999999998

The mechanism of energy coupling, if any, to methyl-NH2 or NH3 uptake by the AmtB protein of E. coli is not entirely clear. NH4+ uniport driven by the pmf, energy independent NH3 facilitation, and NH4+/K+ antiport have been proposed as possible transport mechanisms. In Corynebacterium glutamicum and Arabidopsis thaliana, uptake via the Amt1 homologues of AmtB has been reported to be driven by the pmf.

>PF00909 Ammonium_transp: Ammonium Transporter Family; InterPro: IPR024041 This ammonium transporter domain consists of a duplication of 2 structural repeats of five helices each plus one extra C-terminal helix

Probab=99.92  E-value=4e-26  Score=186.37  Aligned_cols=91  Identities=29%  Similarity=0.375  Sum_probs=79.3

Q ss_pred             CeecchhHHHHHHHHH-HHHHhCCCCccccccccc------------------------------CchhHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG------------------------------GWGFIGSQVTELSVI   49 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg------------------------------~~~ql~~Ql~g~~~i   49 (114)
                      ++||+++|.+|+++.+ +++|+|||||+|++++||                              +++|++.|++|++++
T Consensus       278 ~~iG~iag~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~i~~glfa~~~~~~~~~~~~~~~~~~~~l~~Ql~g~~~~  357 (399)
T PF00909_consen  278 LLIGAIAGLISYFGVSWLLKRLKIDDPVGAFAVHGVGGIWGTILTGLFASPEVNYSDGYGGLFYGNGRQLGIQLLGIVVI  357 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHTS-HTTGHHHHCHHHHHHHHHHHHHHCCCHHCSS-SSTTHHHHHHHHHHHHHHHHHHH
T ss_pred             HHhhhhHhhhhhhheecccceeEeccccceEeeeeccHHHHHHHHHHHhccccccccccccccCCchhHHHHHHHHHHHH
Confidence            3689999999988886 899999999999999999                              136899999999999


Q ss_pred             HHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccc
Q 046160           50 VGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAY   91 (114)
Q Consensus        50 ~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay   91 (114)
                      ++|++++|+++++++|++.+||+++|+|+.|+|.++|||+||
T Consensus       358 ~~~~~~~s~i~~~~l~~~~~LRv~~~~E~~GlD~~~hg~~aY  399 (399)
T PF00909_consen  358 LAWSFVVSYIIFKILKKFGGLRVSEEDERVGLDLSEHGEEAY  399 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHT-SB--HHHHHH-HHHHHHS--SB
T ss_pred             HHHHHHHHHHHHHHHHhccccCCCHHHHhhCCCHHHhCcCcC
Confidence            999999999999999999999999999999999999999998

It has been described as a channel that spans the membrane 11 times [].; PDB: 3B9Z_A 3B9Y_A 3B9W_A 3BHS_A 2B2H_A 2B2J_A 2B2F_A 2B2I_A 2NPG_A 2NUU_E ....

>KOG3796 consensus Ammonium transporter RHBG [Intracellular trafficking, secretion, and vesicular transport; General function prediction only]

Probab=93.43  E-value=0.068  Score=44.69  Aligned_cols=76  Identities=24%  Similarity=0.058  Sum_probs=57.4

Q ss_pred             CeecchhHHHHHHHHH-----HHHHhCCCCccccccccc----------------------------------------C
Q 046160            1 MVRPYFEPWVLIGLNI-----LAIKLNFDDPLEATRLHG----------------------------------------G   35 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-----~~~~~~iDD~lda~~vHg----------------------------------------~   35 (114)
                      ++||+++|.++....+     +.++++|-|..++=-.||                                        .
T Consensus       302 miiG~iAG~vSvlG~kyltp~l~~~l~i~dtcgv~nlhgmpg~l~~~~~i~~a~~~t~e~yg~~l~~ifp~~~gng~~~~  381 (442)
T KOG3796|consen  302 MIIGLIAGLVSVLGYKYLTPFLERKLGIHDTCGVHNLHGMPGLLGGIASIVFAVLATPESYGKGLYHIFPMIGGNGHGMA  381 (442)
T ss_pred             HHHHHHHHHHhhccceeechhhcccccccccccccccccchHHHHHHHHHHHHhhcchhhcccccccccceecCCCccch
Confidence            4789999999855443     345799999999999999                                        1


Q ss_pred             chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHH
Q 046160           36 WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEE   77 (114)
Q Consensus        36 ~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E   77 (114)
                      ..|-..|+.|+.++++-+.+..++.-.++ |+.-++-++|+|
T Consensus       382 ~sQa~~Ql~gl~~~l~~A~~gGlLtGllL-kl~~w~qp~d~~  422 (442)
T KOG3796|consen  382 TSQALYQLFGLLVTLVIALVGGLLTGLLL-KLKIWDQPSDDE  422 (442)
T ss_pred             hHHHHHHHHHHHHHHHHHHHhhhhhhhee-eccccCCCChhh
Confidence            36889999999999887776666654444 456677777766

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	114
3b9w_A	407	Ammonium transporter family; membrane protein, amm	4e-07

>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A* Length = 407

 Score = 45.9 bits (109), Expect = 4e-07
 Identities = 10/89 (11%), Positives = 24/89 (26%), Gaps = 13/89 (14%)

Query: 16  ILAIKLNFDDPLEATRLHGGWGFIG-------------SQVTELSVIVGWVRETMGPLFH 62
           +L  K    D      LHG  G +G             +Q+T + + +            
Sbjct: 283 MLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPGIAVAQLTGIGITLALALIGGVIAGA 342

Query: 63  ALHKLKMLRILEDEEITGLDISSDSGYAY 91
            +      +   ++    + ++       
Sbjct: 343 LIKLTGTTKQAYEDSHEFIHLAGPEDEHK 371

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	114
2b2h_A	399	AMT-1, ammonium transporter; membrane protein, tra	99.95
3b9w_A	407	Ammonium transporter family; membrane protein, amm	99.85
3hd6_A	490	Ammonium transporter RH type C; ammonia, channel,	99.85
1u7g_A	385	Probable ammonium transporter; right handed helica	99.68

>2b2h_A AMT-1, ammonium transporter; membrane protein, transport protein; 1.54A {Archaeoglobus fulgidus} PDB: 2b2f_A 2b2i_A 2b2j_A

Probab=99.95  E-value=1e-28  Score=201.56  Aligned_cols=98  Identities=24%  Similarity=0.247  Sum_probs=87.7

Q ss_pred             CeecchhHHHHHHHHHHHHHhCCCCccccccccc---------------------------CchhHHHHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNILAIKLNFDDPLEATRLHG---------------------------GWGFIGSQVTELSVIVGWV   53 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~~~~~~~iDD~lda~~vHg---------------------------~~~ql~~Ql~g~~~i~~ws   53 (114)
                      ++||+++|++|+++..+++|+|||||+|++++||                           ++.|++.|++|++++++|+
T Consensus       273 ~iiG~iag~i~~~~~~l~~kl~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~Gl~~g~~~ql~~Ql~g~~~~~~~~  352 (399)
T 2b2h_A          273 IVIGLVAGIVCYLAMDFRIKKKIDESLDAWAIHGIGGLWGSVAVGILANPEVNGYAGLLFGNPQLLVSQLIAVASTTAYA  352 (399)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHCCHHHHSCCCGGGTCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHcCCCCCCCceeccchhhHHHHHHHHHHccccccCCCccccCcHHHHHHHHHHHHHHHHHH
Confidence            3789999999988889999999999999999999                           1279999999999999999


Q ss_pred             HHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccCCCCCC
Q 046160           54 RETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNH   98 (114)
Q Consensus        54 ~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~~~   98 (114)
                      +++|+++++++|++++||+|+|+|.+|||.+||||++|++....|
T Consensus       353 ~v~~~i~~~il~~~~glRv~~e~E~~GlD~~~hg~~ay~~~~~~~  397 (399)
T 2b2h_A          353 FLVTLILAKAVDAAVGLRVSSQEEYVGLDLSQHEEVAYTLEHHHH  397 (399)
T ss_dssp             HHHHHHHHHHHHHHTCSBCCHHHHHHCHHHHHHCCCSCC------
T ss_pred             HHHHHHHHHHHHhcccCCCCHHHHHhCCCHHHhCcccCCcccccc
Confidence            999999999999999999999999999999999999999876643

>3b9w_A Ammonium transporter family; membrane protein, ammonia transport, rhesus protein, transpo protein; HET: BOG; 1.30A {Nitrosomonas europaea} PDB: 3bhs_A 3b9y_A* 3b9z_A*

Probab=99.85  E-value=2.9e-22  Score=163.89  Aligned_cols=103  Identities=14%  Similarity=-0.016  Sum_probs=70.7

Q ss_pred             CeecchhHHHHHHHHH-----HHHHhCCCCccccccccc-----C--------chhHHHHHHHHHHHHHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNI-----LAIKLNFDDPLEATRLHG-----G--------WGFIGSQVTELSVIVGWVRETMGPLFH   62 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-----~~~~~~iDD~lda~~vHg-----~--------~~ql~~Ql~g~~~i~~ws~~~t~ii~~   62 (114)
                      ++||+++|++|+++.+     +++|+|||||+|++++||     |        ...-..|++|++++++|++++|+++++
T Consensus       263 ~iIG~iaG~i~~~~~~~l~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~~Ql~g~~~~~~~s~v~~~i~~~  342 (407)
T 3b9w_A          263 FVIGLLGGAISVVGFVFIQPMLESKAKTIDTCGVHNLHGLPGLLGGFSAILIVPGIAVAQLTGIGITLALALIGGVIAGA  342 (407)
T ss_dssp             HHHHHHHHHHHHHHHHTHHHHHHHHSCCCCTTCHHHHTTHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCeecchHHHHHHHHHHHHHccCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4789999999987775     446789999999999999     1        011126999999999999999999999


Q ss_pred             HHhhhccccCChHHHhcc--------cchhhcccccccCC-----CCCCCcchhhhhh
Q 046160           63 ALHKLKMLRILEDEEITG--------LDISSDSGYAYVCS-----SKNHPRFYADYKR  107 (114)
Q Consensus        63 ~l~~~~~LRv~~e~E~~G--------LD~~~hge~ay~~~-----~~~~~~~~~~~~~  107 (114)
                      ++|+    |+++|+|..|        +|.+||||+||++.     +.+.+||.+...+
T Consensus       343 il~~----r~~~e~e~~g~~~we~p~ld~~~hg~~ayp~~~~~~~~~~~~r~~~~~~~  396 (407)
T 3b9w_A          343 LIKL----TGTTKQAYEDSHEFIHLAGPEDEHKAERLVLEAKTEIQGLKNRIDAAVLS  396 (407)
T ss_dssp             HHHT----TCCCSSTTCGGGTSSSCCCGGGC---------------------------
T ss_pred             HHhC----CCCHHHHcCCcccccCccccHHHhchhhccchhhhhccccccCCChhhhc
Confidence            9998    9999999999        99999999999764     2344555554443

>3hd6_A Ammonium transporter RH type C; ammonia, channel, rhesus, glycoprotein, membran structural genomics, PSI-2, protein structure initiative; HET: BOG; 2.10A {Homo sapiens}

Probab=99.85  E-value=4.7e-22  Score=165.64  Aligned_cols=108  Identities=13%  Similarity=-0.037  Sum_probs=83.9

Q ss_pred             CeecchhHHHHHHHHH-----HHHHhCCCCccccccccc----------------------C------------------
Q 046160            1 MVRPYFEPWVLIGLNI-----LAIKLNFDDPLEATRLHG----------------------G------------------   35 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-----~~~~~~iDD~lda~~vHg----------------------~------------------   35 (114)
                      ++||+++|++|+++.+     +++|+|||||+|++++||                      +                  
T Consensus       312 liIG~iaG~i~~~~~~~l~~~l~~kl~iDD~lgv~~vHGv~Gi~G~l~~glfa~~~~~~~~g~~Gl~~~f~~~~~~gg~~  391 (490)
T 3hd6_A          312 LIIGFVCGIISTLGFVYLTPFLESRLHIQDTCGINNLHGIPGIIGGIVGAVTAASASLEVYGKEGLVHSFDFQGFNGDWT  391 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHCCCCTTCHHHHTHHHHHHHHHHHHHHHHC----------------------CHH
T ss_pred             HHHHHHHHHHHHHHHHHhHHHHHHHCCCCccccchHHhhHHHHHHHHHHHHHhccccccccccCcceeccccccccCCcc
Confidence            3689999999987764     567899999999999999                      1                  


Q ss_pred             -chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccCChHHHhcccchhhcccccccCCCCCCCcchhhhhhh
Q 046160           36 -WGFIGSQVTELSVIVGWVRETMGPLFHALHKLKMLRILEDEEITGLDISSDSGYAYVCSSKNHPRFYADYKRV  108 (114)
Q Consensus        36 -~~ql~~Ql~g~~~i~~ws~~~t~ii~~~l~~~~~LRv~~e~E~~GLD~~~hge~ay~~~~~~~~~~~~~~~~~  108 (114)
                       +.|++.|++|++++++|++++|+++++++|+..++|+++|+|..|+|..|+.++.|+....++++.|+.....
T Consensus       392 ~~~ql~~Ql~gv~~~~~~a~v~~~ii~~iLk~~~~lRvs~e~e~~g~d~we~p~~~~~~~~~~~~~~~~~~~~~  465 (490)
T 3hd6_A          392 ARTQGKFQIYGLLVTLAMALMGGIIVGLILRLPFWGQPSDENCFEDAVYWEMPEGNSTVYIPEDPTFKPSGPSV  465 (490)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTSCCCCTTSTTCGGGTSCCCTTTC-----------------
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCCCHHHHhCCCceeecCcccccccCCCCcccCCccccc
Confidence             2389999999999999999999999999999999999999999999999999999988777777777665443

>1u7g_A Probable ammonium transporter; right handed helical bundle, transmembrane helices, ammonia membrane protein, RH protein, transport protein; HET: MSE BOG; 1.40A {Escherichia coli} SCOP: f.44.1.1 PDB: 1u77_A* 1u7c_A* 1xqf_A 1xqe_A 2ns1_A* 2nop_A 2nmr_A 3c1g_A 3c1i_A* 3c1h_A* 2now_A 2npe_A 2npc_A 2npd_A 2npg_A 2npj_A 2nuu_A* 3c1j_A 2npk_A

Probab=99.68  E-value=3.4e-17  Score=133.11  Aligned_cols=72  Identities=17%  Similarity=0.141  Sum_probs=66.2

Q ss_pred             CeecchhHHHHHHHHH-HHHHhCCCCccccccccc-------------------C---------chhHHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNI-LAIKLNFDDPLEATRLHG-------------------G---------WGFIGSQVTELSVIVG   51 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~-~~~~~~iDD~lda~~vHg-------------------~---------~~ql~~Ql~g~~~i~~   51 (114)
                      ++||+++|++|++..+ +++|+|||||+|++++||                   +         +.|++.|++|++++++
T Consensus       285 ~iiG~iag~i~~~~~~~l~~~l~iDD~l~a~~vHgv~Gi~G~l~~glfa~~~~~g~~~~~G~~~g~ql~~Ql~g~~~~~~  364 (385)
T 1u7g_A          285 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIV  364 (385)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhHHHHHHHHHHHHHHHhCCCCCCCCCEeecccccHHHHHHHHHhccccccCccccCCcchhHHHHHHHHHHHHHHH
Confidence            3689999999988887 678999999999999999                   1         1599999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccC
Q 046160           52 WVRETMGPLFHALHKLKMLRI   72 (114)
Q Consensus        52 ws~~~t~ii~~~l~~~~~LRv   72 (114)
                      |++++|+++++++|++++|||
T Consensus       365 ~~~v~~~i~~~il~~~~glRv  385 (385)
T 1u7g_A          365 WSGVVAFIGYKLADLTVGLRV  385 (385)
T ss_dssp             HHHHHHHHHHHHHHHHTCSBC
T ss_pred             HHHHHHHHHHHHHHHccCCcC
Confidence            999999999999999999997

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	114
d1u7ga_	383	Ammonium transporter AmtB {Escherichia coli [TaxId	99.67

>d1u7ga_ f.44.1.1 (A:) Ammonium transporter AmtB {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: Ammonium transporter
superfamily: Ammonium transporter
family: Ammonium transporter
domain: Ammonium transporter AmtB
species: Escherichia coli [TaxId: 562]

Probab=99.67  E-value=1.4e-17  Score=133.10  Aligned_cols=72  Identities=14%  Similarity=0.085  Sum_probs=66.2

Q ss_pred             CeecchhHHHHHHHHHHH-HHhCCCCccccccccc----------------------------CchhHHHHHHHHHHHHH
Q 046160            1 MVRPYFEPWVLIGLNILA-IKLNFDDPLEATRLHG----------------------------GWGFIGSQVTELSVIVG   51 (114)
Q Consensus         1 ~iIG~i~g~~~~~~~~~~-~~~~iDD~lda~~vHg----------------------------~~~ql~~Ql~g~~~i~~   51 (114)
                      ++||+++|++|++...++ +|+|||||+|++++||                            .++|+++|++|++++++
T Consensus       283 ~~iG~i~g~i~~~~~~~l~~~~~iDD~~~~~~vHg~~Gi~G~l~~glfa~~~~~g~~~~~~~~~~~ql~~Ql~g~~v~~~  362 (383)
T d1u7ga_         283 LIIGVVAGLAGLWGVTMLKRLLRVDDPCDVFGVHGVCGIVGCIMTGIFAASSLGGVGFAEGVTMGHQLLVQLESIAITIV  362 (383)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCSCCGGGHHHHHHHHHHHHHHHHHHHTSGGGTCCCCCTTCCHHHHHHHHHHHHHHHHH
T ss_pred             HHHHhhccHHHHHHHHHHHhhcccccccceEeehhhhHHHHHHHHHHhcCccccccccccccchHHHHHHHHHHHHHHHH
Confidence            368999999998777755 5899999999999999                            25899999999999999


Q ss_pred             HHHHHHHHHHHHHhhhccccC
Q 046160           52 WVRETMGPLFHALHKLKMLRI   72 (114)
Q Consensus        52 ws~~~t~ii~~~l~~~~~LRv   72 (114)
                      |++++++++++++|++.+|||
T Consensus       363 ~~~~~~~ii~~il~~~~gLRV  383 (383)
T d1u7ga_         363 WSGVVAFIGYKLADLTVGLRV  383 (383)
T ss_dssp             HHHHHHHHHHHHHHHHTCSBC
T ss_pred             HHHHHHHHHHHHHHhCcCCcC
Confidence            999999999999999999997