Citrus Sinensis ID: 046173

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------31
Protein Sequence
MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF
Secondary Structure (PSIPRED)
ccccccHHHHHHHHHHHHHHHHHHccHHHHHccccccHHHHHHHHHHccccccHHHHHHHHHHcccccccccccccccccccccEEcccEEEEEEEEcHHHHHHHHHHHHHHcccccccccEEEEEEcccccEEEEEEcccccEEEEEEEccccccEEcccccccccccccccHHHHHcccccccccEEEEEcccccccccEEEEccEEEEEEEEEEccccccccccccccccEEEEEEEEEEEEccccEEEEEEcEEEEEccccccccccEEEEEEEEEEccccccccccEEEEEcccccccccccc
Secondary Structure Prediction (SSPRO)
cccccHHHHHHHHHHHHHHHHHHHcHHHHHHHcccccHHHHHHHHHHHcccccccHEEHEEEEcccEcccccccccccccEEccEEEcccEEEEEEccHHHHHHHHHHHHHHccccccccEEEEEEcccccccEEEEEccccEEEEEEEcccccccEEccccHHHHHEccccccccccHHEEHHHcccEEcccccccccccHHccccEEEEEEEEEcccccccEEEcccccHccEcccEEEEEEcccccEccccccEEEEccccccccccccEEEEEEEccccccccccccEEEEEcccccccccccc
Coil and Loop (DISEMBL)
MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLkvklpvptrilyrfcdgqecqtddfesigsmgliggysfYGHLVNVYLIPLSHIIMETKEIRRqlhfpgrdkYVVLASsstysekffflnctngqlyvgtknllsdgeiipcvpnalislghsfnsdqqqdlccyeenfkfinlfpeepshcsiavtngmntcLRIQftsllpegciingmtfssCLLQHRHWVIHAYNVVlsdvsgeavigmsctplpgssgsvrgslmfvparladpkgspfevevaefplqqpdyif
Flexible Loop (DISEMBL)
mgcfdfyddvkRHWDRFKKWLTENFPEAKATLRKGASEADIQELekslkvklpvpTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVaefplqqpdyif
Low Complexity Region (SEG)
MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF
Disordered region (IsUnstruct)
**CFDFYDDVKRHWDRFKKWLTENFPEA*****************KSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPL**********LMFV****************************
Disordered Region (DISOPRED)
****DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFT***********MTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF
Disordered Region (DISEMBL)
MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF
Disordered Region (DISPRO)
MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDLCCYEENFKFINLFPEEPSHCSIAVTNGMNTCLRIQFTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGMSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	308	2.2.26 [Sep-21-2011]
Q9LND7	436	F-box protein SKIP16 OS=A	yes	no	0.983	0.694	0.480	6e-81
Q6BW41	451	KNR4/SMI1 homolog 1 OS=De	yes	no	0.308	0.210	0.287	3e-06
Q9UK99	471	F-box only protein 3 OS=H	no	no	0.256	0.167	0.345	2e-05
A6H7H7	469	F-box only protein 3 OS=B	yes	no	0.256	0.168	0.345	2e-05
D4ABP9	480	F-box only protein 3 OS=R	yes	no	0.25	0.160	0.341	5e-05
Q6BJY4	590	KNR4/SMI1 homolog 2 OS=De	no	no	0.172	0.089	0.425	7e-05
Q6FL35	584	KNR4/SMI1 homolog OS=Cand	yes	no	0.272	0.143	0.336	0.0001
Q9DC63	480	F-box only protein 3 OS=M	no	no	0.256	0.164	0.333	0.0002
P32566	505	Cell wall assembly regula	yes	no	0.272	0.166	0.316	0.0004

>sp|Q9LND7|SKI16_ARATH F-box protein SKIP16 OS=Arabidopsis thaliana GN=SKIP16 PE=1 SV=1

 Score =  301 bits (770), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 174/362 (48%), Positives = 214/362 (59%), Gaps = 59/362 (16%)

Query: 1   MGCFDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILY 60
           M  ++    V+  WD  K+WLT NFPEAKATLRKG +E D+QE E SLKVKLP+PTR+LY
Sbjct: 80  MYPWNLVKRVRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLY 139

Query: 61  RFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRQLHFPGRD 119
           RF DGQE  + +    GS+GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R 
Sbjct: 140 RFVDGQELSSPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRL 198

Query: 120 KYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD 179
             +V+A+S   S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD
Sbjct: 199 DLIVMAASVVASLKIFLLDCTTGQLFTGTSN----RQLLPCVPDALVRSVHDTNGDQQQD 254

Query: 180 --LCCYEE----------------NFKFINLFPEEPSHCSIAVTNGMN-----------T 210
             L   EE                N K I+LFPE P  CS++VTNG+            +
Sbjct: 255 AMLLWLEEHGRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGVQVRASSVFIPEIS 314

Query: 211 CLRIQ----------FTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG 260
            LR Q            SL+PEGCI+NG   SSC L  RHWVI A N V+ +V+GEAVIG
Sbjct: 315 NLRDQPPAYWYAYSIRMSLMPEGCILNGTHHSSCQLYWRHWVIRADNEVIDNVNGEAVIG 374

Query: 261 M--------------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDY 306
                          SC+  P ++GS+ GS  FVP  L DPKGS FEV+V EFPL+ PDY
Sbjct: 375 KYPLLQAGEEEFVYESCSSFPTTAGSIDGSFTFVPGSLRDPKGSQFEVKVVEFPLELPDY 434

Query: 307 IF 308
           IF
Sbjct: 435 IF 436

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins.
Arabidopsis thaliana (taxid: 3702)

>sp|Q6BW41|SMI1_DEBHA KNR4/SMI1 homolog 1 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2B14542g PE=3 SV=2

 Score = 52.8 bits (125), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 53/108 (49%), Gaps = 13/108 (12%)

Query: 4   FDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFC 63
           FD   +V+  W   K WL +  P+  +TL+   ++AD+ + +K L +KLP      Y+  
Sbjct: 67  FDGVHEVRLAWRHIKNWLLKYSPDLNSTLQSPCTDADLSDFQKDLNIKLPNCLIEFYKIT 126

Query: 64  DGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRR 111
           DGQ      F   GS GL+ G         + L+P+  +++ T+  R+
Sbjct: 127 DGQSY----FNDNGSGGLVFG---------LKLMPIDEVMVMTEHWRK 161

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q9UK99|FBX3_HUMAN F-box only protein 3 OS=Homo sapiens GN=FBXO3 PE=1 SV=3

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 5   DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
           D Y  +K+ WD  KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +
Sbjct: 91  DHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150

Query: 65  GQECQTDDFESIGSMGLIGGY 85
           GQ+        +GSM L   Y
Sbjct: 151 GQKLVVPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Homo sapiens (taxid: 9606)

>sp|A6H7H7|FBX3_BOVIN F-box only protein 3 OS=Bos taurus GN=FBXO3 PE=2 SV=1

 Score = 50.4 bits (119), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 28/81 (34%), Positives = 40/81 (49%), Gaps = 2/81 (2%)

Query: 5   DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
           D Y  +K+ WD  KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +
Sbjct: 91  DHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150

Query: 65  GQECQTDDFESIGSMGLIGGY 85
           GQ+        +GSM L   Y
Sbjct: 151 GQKLVVPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Bos taurus (taxid: 9913)

>sp|D4ABP9|FBX3_RAT F-box only protein 3 OS=Rattus norvegicus GN=Fbxo3 PE=3 SV=1

 Score = 48.9 bits (115), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/79 (34%), Positives = 39/79 (49%), Gaps = 2/79 (2%)

Query: 7   YDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQ 66
           Y  +K+ WD  KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ
Sbjct: 93  YAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQ 152

Query: 67  ECQTDDFESIGSMGLIGGY 85
           +        +GSM L   Y
Sbjct: 153 KLVVPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2, and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Rattus norvegicus (taxid: 10116)

>sp|Q6BJY4|SMI2_DEBHA KNR4/SMI1 homolog 2 OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) GN=DEHA2F26422g PE=3 SV=2

 Score = 48.1 bits (113), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 23/54 (42%), Positives = 28/54 (51%), Gaps = 1/54 (1%)

Query: 14  WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKV-KLPVPTRILYRFCDGQ 66
           WDR + WL E +PE    L  G + AD+ E E  L    LPV  R  Y+  DGQ
Sbjct: 121 WDRIESWLEEEYPELGDNLNDGVTTADLNEFENDLGCGSLPVEIRQFYKRHDGQ 174

Debaryomyces hansenii (strain ATCC 36239 / CBS 767 / JCM 1990 / NBRC 0083 / IGC 2968) (taxid: 284592)

>sp|Q6FL35|SMI1_CANGA KNR4/SMI1 homolog OS=Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) GN=CAGL0L06534g PE=3 SV=1

 Score = 47.4 bits (111), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 33/98 (33%), Positives = 46/98 (46%), Gaps = 14/98 (14%)

Query: 14  WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
           W     W +E  P+  ATL    +  DI+  E+ L+V LP   +  YR  DGQE    D 
Sbjct: 82  WRHIDTWTSEYNPDLNATLSDPCTANDIKHAEEDLEVVLPKALKASYRIHDGQE----DL 137

Query: 74  ESI-GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
           ES+ G+ GLI G         + L+ L  I+  T+  R
Sbjct: 138 ESMTGTSGLIYG---------LQLMTLDEIVAMTQRWR 166

Candida glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC 0622 / NRRL Y-65) (taxid: 284593)

>sp|Q9DC63|FBX3_MOUSE F-box only protein 3 OS=Mus musculus GN=Fbxo3 PE=2 SV=1

 Score = 47.4 bits (111), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/81 (33%), Positives = 39/81 (48%), Gaps = 2/81 (2%)

Query: 5   DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
           D Y  +K+ W   KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +
Sbjct: 91  DHYAAIKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150

Query: 65  GQECQTDDFESIGSMGLIGGY 85
           GQ+        +GSM L   Y
Sbjct: 151 GQKLVVPGL--LGSMALSNHY 169

Substrate recognition component of the SCF (SKP1-CUL1-F-box protein)-type E3 ubiquitin ligase complex. Mediates the ubiquitination of HIPK2 and probably that of EP300, leading to rapid degradation by the proteasome. In the presence of PML, HIPK2 ubiquitination still occurs, but degradation is prevented. PML, HIPK2 and FBXO3 may act synergically to activate p53/TP53-dependent transactivation.

Mus musculus (taxid: 10090)

>sp|P32566|SMI1_YEAST Cell wall assembly regulator SMI1 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=SMI1 PE=1 SV=1

 Score = 45.8 bits (107), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/98 (31%), Positives = 47/98 (47%), Gaps = 14/98 (14%)

Query: 14  WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
           W     W +E+ P+  ATL    ++ DI   E+ L+V  P P +  ++  DGQE    D 
Sbjct: 94  WRHIDFWTSEHNPDLNATLSDPCTQNDITHAEEDLEVSFPNPVKASFKIHDGQE----DL 149

Query: 74  ESI-GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR 110
           ES+ G+ GL     FYG      L+ L  ++  T+  R
Sbjct: 150 ESMTGTSGL-----FYG----FQLMTLDQVVAMTQAWR 178

Protein involved in the regulation of cell wall assembly and 1,3-beta-glucan synthesis, possibly through the transcriptional regulation of cell wall glucan and chitin synthesis.

Saccharomyces cerevisiae (strain ATCC 204508 / S288c) (taxid: 559292)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
363807331	443	uncharacterized protein LOC100778108 [Gl	0.970	0.674	0.543	1e-94
359806703	443	uncharacterized protein LOC100809876 [Gl	0.970	0.674	0.563	3e-94
225433984	444	PREDICTED: F-box protein SKIP16-like [Vi	0.967	0.671	0.540	1e-93
359478141	443	PREDICTED: F-box protein SKIP16-like [Vi	0.970	0.674	0.526	5e-92
357473077	443	F-box protein SKIP16 [Medicago truncatul	0.970	0.674	0.523	6e-92
224133222	442	predicted protein [Populus trichocarpa]	0.970	0.676	0.536	8e-92
182407842	443	F-box-containing protein 2 [Malus x dome	0.990	0.688	0.512	2e-91
388508926	444	unknown [Lotus japonicus]	0.967	0.671	0.526	5e-91
224093067	443	predicted protein [Populus trichocarpa]	0.970	0.674	0.523	2e-89
255577191	446	protein with unknown function [Ricinus c	0.970	0.670	0.516	1e-88

>gi|363807331|ref|NP_001242370.1| uncharacterized protein LOC100778108 [Glycine max] gi|255641731|gb|ACU21136.1| unknown [Glycine max]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 193/355 (54%), Positives = 230/355 (64%), Gaps = 56/355 (15%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VKR WD+ K WLT NFPEA+ATL KGA+EADIQELE  LKVKLP+P+RILYRF +GQE  
Sbjct: 89  VKRCWDKIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPSRILYRFHNGQEIA 148

Query: 70  TDDFESI---GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
             D E+     S+GLIGGYSFY HLVNVYL+P+  II+ETK+ RR L F  R KYV++A+
Sbjct: 149 KADPETTTYGSSLGLIGGYSFYSHLVNVYLLPIRQIILETKQTRRHLSFLRRSKYVLVAA 208

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SSTYS K FFL+CTNGQLYVGT++LL++G+IIPCVP+ LI+L    N  +QQD  L   E
Sbjct: 209 SSTYSRKLFFLSCTNGQLYVGTRDLLTEGDIIPCVPHDLINLHQELNISEQQDAMLLWLE 268

Query: 185 E----------------NFKFINLFPEEPSHCSIAVTNGMNT---------CLRIQ---- 215
           E                N K INLFPEEP  CS+AVTNG+            + +Q    
Sbjct: 269 EHGRRLEHGFIKLHDKGNGKSINLFPEEPPLCSMAVTNGVKVRASALVIPELIDLQDDLE 328

Query: 216 --------FTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG------- 260
                     SL P+GC INGM+FSSC L  RHW+I A ++V+SDV+GEAVIG       
Sbjct: 329 KYLFAYSIRLSLEPQGCTINGMSFSSCQLHWRHWIIRANDIVISDVNGEAVIGQYPLLRP 388

Query: 261 -------MSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   S   LP  SGS+ GS  F+P RLADPKG PF   VA FPLQ PDYIF
Sbjct: 389 GAQEFVYQSRMHLPTPSGSIEGSFTFIPGRLADPKGDPFLATVARFPLQLPDYIF 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359806703|ref|NP_001241035.1| uncharacterized protein LOC100809876 [Glycine max] gi|255635912|gb|ACU18303.1| unknown [Glycine max]

 Score =  350 bits (899), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 200/355 (56%), Positives = 234/355 (65%), Gaps = 56/355 (15%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VKR WDR K WLT NFPEA+ATL KGA+EADIQELE  LKVKLP+PTRILYRF +GQE  
Sbjct: 89  VKRCWDRIKTWLTNNFPEAEATLCKGATEADIQELENVLKVKLPLPTRILYRFHNGQEFA 148

Query: 70  TDDFESIG---SMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
             D E+     S+GLIGGYSFYGHLVNVYL+P+  II+ET++ RR+L F  R KYV++A+
Sbjct: 149 KADPETSTFGRSLGLIGGYSFYGHLVNVYLLPICQIILETQQTRRRLSFLRRSKYVLVAA 208

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SSTYS K FFLNCTNGQLYVGT++ L++ +IIPCVP+ LISL    NS +QQD  L   E
Sbjct: 209 SSTYSRKLFFLNCTNGQLYVGTRSPLTERDIIPCVPHDLISLHQELNSSEQQDAMLLWLE 268

Query: 185 E----------------NFKFINLFPEEPSHCSIAVTNGMNT---------CLRIQ---- 215
           E                N K INLFPEEP  CS AVTNG+            + +Q    
Sbjct: 269 EHGRRLEHGFIKLHDEGNGKSINLFPEEPHICSTAVTNGVKVRASALVIPELMDLQDDLG 328

Query: 216 --------FTSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG------- 260
                     SL P+GCIINGM+FSSC L  RHW+I A ++V+SDVSG+AVIG       
Sbjct: 329 EYLFAYSIRLSLEPQGCIINGMSFSSCQLHWRHWIIRANDIVISDVSGKAVIGQFPLLRP 388

Query: 261 -------MSCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   SCTPLP  SGS+ GS  F+P RLADPKG PF   VA FPLQ PDYIF
Sbjct: 389 GAQEFVYQSCTPLPTPSGSIEGSFTFIPGRLADPKGDPFLATVARFPLQLPDYIF 443

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225433984|ref|XP_002271000.1| PREDICTED: F-box protein SKIP16-like [Vitis vinifera]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 192/355 (54%), Positives = 223/355 (62%), Gaps = 57/355 (16%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VKR WDR K WL+ NFPEA ATLRKGA+E +I+ LE  LKVKLP+PTR+LYRFCDGQE  
Sbjct: 91  VKRCWDRLKNWLSANFPEADATLRKGATEVEIEALENILKVKLPLPTRLLYRFCDGQEL- 149

Query: 70  TDDFESIG---SMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
           TDD        S+G+IGGY FY HLVNV L+PL  +I+ETKEI  QL F    KYV++A+
Sbjct: 150 TDDVGGTALGSSLGIIGGYCFYDHLVNVCLLPLRQVILETKEITDQLGFSTTSKYVIVAA 209

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SSTY  KFFFLNCT GQLYVGT++L+S GE+IPCVPNALIS  H  N+ QQQD  L   E
Sbjct: 210 SSTYIGKFFFLNCTTGQLYVGTRSLVSAGEMIPCVPNALISPMHDSNTGQQQDAMLLWLE 269

Query: 185 EN----------------FKFINLFPEEPSHCSIAVTNGMNTCLRIQF------------ 216
           E+                 + INLFPEE   CS AVTNG+       F            
Sbjct: 270 EHVRRLQNGIIKLRNEGMIRSINLFPEESPLCSTAVTNGVQVRASAVFIPEGCNLLDESH 329

Query: 217 ---------TSLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------ 261
                      LLPEGCI+NG +F SC L  RHW+I A + V+S+V+ EAVIG       
Sbjct: 330 KYLFAYSIRMRLLPEGCIVNGTSFGSCQLNWRHWIIRANDHVVSEVNAEAVIGKYPLLYP 389

Query: 262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   SCTPL  S GS+ G+  FVP RLADPKGS FEVEV  FPLQ PDYIF
Sbjct: 390 GGEEFVYESCTPLSSSQGSIEGAFTFVPGRLADPKGSAFEVEVGRFPLQCPDYIF 444

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359478141|ref|XP_002271295.2| PREDICTED: F-box protein SKIP16-like [Vitis vinifera]

 Score =  343 bits (881), Expect = 5e-92,   Method: Compositional matrix adjust.
 Identities = 187/355 (52%), Positives = 222/355 (62%), Gaps = 56/355 (15%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VKR WDR K WL+ NFP+A ATLRKGA+E +I+ LE  LKVKLP+PTR+LYRFCDGQE  
Sbjct: 89  VKRCWDRLKNWLSANFPDADATLRKGATEVEIEALENILKVKLPLPTRLLYRFCDGQELT 148

Query: 70  TDDFESI---GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
            +D       GS+G++GGY    HLVNV L+PL  +I+ETKEI  QL F    KYV++A+
Sbjct: 149 EEDVGGTALGGSLGIMGGYCCNDHLVNVCLLPLRQVILETKEITDQLGFSTTSKYVIVAA 208

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SSTY  KFFFLNCT GQLYVGT++L+S GE+IPCVPNALIS  H  N+ QQQD  L   E
Sbjct: 209 SSTYIGKFFFLNCTTGQLYVGTRSLVSAGEMIPCVPNALISPMHDMNTGQQQDAMLLWLE 268

Query: 185 EN----------------FKFINLFPEEPSHCSIAVTNGMNTCLRIQFT----------- 217
           E+                 + INLFPEEP  CS AVTNG+       F            
Sbjct: 269 EHVRRLQNGIIKLRKEGMIRSINLFPEEPPLCSTAVTNGIQVRASAVFIPEGCNLRDKSH 328

Query: 218 ----------SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------ 261
                      LLPEGCI+NG++F SC L  RHW+I A + V+S+V+ EAVIG       
Sbjct: 329 KYVFAYSIRMRLLPEGCIVNGISFGSCQLNWRHWIIRANDHVVSEVNAEAVIGKYPLLYP 388

Query: 262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   SCT L  S GS+ G+  FVP RLADPKGS FEVEV  FPLQ PDYIF
Sbjct: 389 GGEEFVYESCTHLSSSRGSIEGAFTFVPGRLADPKGSAFEVEVGRFPLQCPDYIF 443

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|357473077|ref|XP_003606823.1| F-box protein SKIP16 [Medicago truncatula] gi|355507878|gb|AES89020.1| F-box protein SKIP16 [Medicago truncatula]

 Score =  343 bits (880), Expect = 6e-92,   Method: Compositional matrix adjust.
 Identities = 186/355 (52%), Positives = 225/355 (63%), Gaps = 56/355 (15%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VKR WD  K WLT NFPEAK TL +GASE +IQELE  L VKLP+PTRILYRF +GQE +
Sbjct: 89  VKRCWDNIKTWLTNNFPEAKETLCEGASEVEIQELEDVLNVKLPLPTRILYRFHNGQEIE 148

Query: 70  TDDFESIGS---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
             D ++  S   +G+IGGYSFY H VNVYL+P+S +I ET++I   L F  R KYV++A+
Sbjct: 149 KHDHDTSTSDISLGIIGGYSFYDHFVNVYLLPISQVIQETQQISHNLGFLRRSKYVLVAA 208

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SSTY EK FFLNCTNGQLYVGT+NLL++ +++PCVP  LISL H  +S++ QD  L   E
Sbjct: 209 SSTYREKLFFLNCTNGQLYVGTRNLLTNRDLMPCVPQNLISLHHEMDSEKIQDAMLLWLE 268

Query: 185 E----------------NFKFINLFPEEPSHCSIAVTNGMNTCLRIQFT----------- 217
           E                N K I+LFPEE   CS AVTNG+                    
Sbjct: 269 EHGRRLQRGFIKLLEEGNAKSISLFPEESPVCSTAVTNGVQIRASALLVPEGVDLQGDRE 328

Query: 218 ----------SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------ 261
                     SL P+GC+INGM+ SSC L  RHW+I A + V+SDV+GEAVIGM      
Sbjct: 329 KYLFSYSIRMSLQPQGCVINGMSHSSCQLYWRHWIIRANDAVVSDVNGEAVIGMYPLLRP 388

Query: 262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   SC+PLP SSGS+ GS  FVP RL DP+G PF V+VA FPLQ PDYIF
Sbjct: 389 GDKEFVYQSCSPLPTSSGSIEGSFTFVPGRLVDPRGDPFLVQVAHFPLQLPDYIF 443

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224133222|ref|XP_002327990.1| predicted protein [Populus trichocarpa] gi|222837399|gb|EEE75778.1| predicted protein [Populus trichocarpa]

 Score =  343 bits (879), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 189/352 (53%), Positives = 220/352 (62%), Gaps = 53/352 (15%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VK  WDR K WLT NFPE KATL +GASE +IQELE+ LKVKLP+PTR+LYRF DGQ   
Sbjct: 91  VKSCWDRLKSWLTTNFPEVKATLGRGASEGEIQELERILKVKLPLPTRLLYRFHDGQNLT 150

Query: 70  TDDFESIGS---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
            ++  +  +   +GLIGGY FY HLVNVYL+PL  +I+ET+EI R L  P   +++V+A+
Sbjct: 151 GENLNTDAAACLLGLIGGYCFYDHLVNVYLLPLHEVILETREIVRHLDLPNGSQFIVVAA 210

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SS+   KFFFLNC++GQLYVGT+NLL+ GE+IPCVP  LIS  H FN DQQQD  L   E
Sbjct: 211 SSSNIGKFFFLNCSDGQLYVGTQNLLTIGEMIPCVPQTLISPVHDFNIDQQQDAMLLWLE 270

Query: 185 E----------------NFKFINLFPEEPSHCSIAVTNGMNTCLRIQFT----------- 217
           E                N K I+LFPEE   CS AVTNG+       F            
Sbjct: 271 EHGHRLHNGMIKLRDEGNIKSISLFPEESPLCSTAVTNGVKVRASAIFVPEAVDLSRKYL 330

Query: 218 -------SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM--------- 261
                  SL PEGCIINGM FSSC L  RHWVI A + V S+V+ EAVIG          
Sbjct: 331 FAYSIRMSLPPEGCIINGMRFSSCQLHLRHWVISADDTVASNVNAEAVIGKFPLLLPGEK 390

Query: 262 -----SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                SCTPL   +GSV GS  FVP RL DPKG PFE EVA FPLQ PDYIF
Sbjct: 391 EFVYESCTPLRSPTGSVEGSFTFVPGRLIDPKGMPFEAEVARFPLQLPDYIF 442

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|182407842|gb|ACB87912.1| F-box-containing protein 2 [Malus x domestica]

 Score =  342 bits (876), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 185/361 (51%), Positives = 230/361 (63%), Gaps = 56/361 (15%)

Query: 4   FDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFC 63
           +     VKR WD+ + WLT NFPEA +TL+KGASEADIQE+EK LKVKLP+PTRILYRF 
Sbjct: 83  WSLVKRVKRCWDKIRNWLTINFPEAVSTLKKGASEADIQEVEKILKVKLPLPTRILYRFH 142

Query: 64  DGQECQTDDFES--IG-SMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDK 120
           +GQ  +   F++  +G  +GLIGGY+FY  LV VYL+PL  +++ET +IRR+L F GR +
Sbjct: 143 NGQAFEEKHFQNNLVGCPLGLIGGYAFYDQLVTVYLMPLRQVVLETMKIRRKLGFTGRSE 202

Query: 121 YVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQDL 180
           YVV+A S  YS K FFLNCT+GQLYVGT+NL +DG+++PCVP+ALIS  H  N D+QQD 
Sbjct: 203 YVVVADSCAYSGKLFFLNCTSGQLYVGTRNLPTDGQMLPCVPDALISSIHDCNVDRQQDG 262

Query: 181 CCY------------------EENFKFINLFPEEPSHCSIAVTNGM-------------- 208
                                EENF+ I+ FPEE   CS A+TNG+              
Sbjct: 263 MLLWLEEHGRRLENGIIKLRQEENFRTISQFPEESPLCSTAITNGVKVRASAVFVPECAD 322

Query: 209 --NTCLRIQFT-----SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM 261
             NT  +  F+     S LPEGC+INGM FSSC L  RHW+I + +VV++DV GEAVIG 
Sbjct: 323 LENTSEKYTFSYSIRMSFLPEGCVINGMPFSSCQLNRRHWIIRSNDVVVADVGGEAVIGQ 382

Query: 262 --------------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307
                         S + LP SSGS+ GS  FVP  L  PKG PFEV VA FPLQ P+YI
Sbjct: 383 YPLLRPGEEEFVYESYSCLPSSSGSIEGSFTFVPGSLRVPKGGPFEVAVARFPLQLPNYI 442

Query: 308 F 308
           F
Sbjct: 443 F 443

Source: Malus x domestica

Species: Malus x domestica

Genus: Malus

Family: Rosaceae

Order: Rosales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388508926|gb|AFK42529.1| unknown [Lotus japonicus]

 Score =  340 bits (872), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 187/355 (52%), Positives = 224/355 (63%), Gaps = 57/355 (16%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VK+ WD+ K WL  NFPEA+ATL KGASEA+I ELE  L+VKLP+PTRILYRF +GQE  
Sbjct: 91  VKQCWDKLKTWLVNNFPEAEATLCKGASEAEILELENVLEVKLPLPTRILYRFHNGQEIA 150

Query: 70  TDDFESI---GSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
             D ES     S+GLIGGYSFY HLVNVYL+PL  +I+ET+ + R L F  R KYV++A+
Sbjct: 151 NGDLESDTFGSSLGLIGGYSFYSHLVNVYLLPLRQVILETQNLTRHLGFLRRSKYVLVAA 210

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SST +EK FFLNC +GQLYVGT+   +  ++IPCVP+ LISL H  N++QQQD  L  +E
Sbjct: 211 SSTQNEKLFFLNCIDGQLYVGTRTFFTSEDLIPCVPHNLISL-HGLNNEQQQDAMLLWFE 269

Query: 185 E----------------NFKFINLFPEEPSHCSIAVTNGMNTCLRIQFT----------- 217
           E                N + INLFPEEP  CS  +TNG+       F            
Sbjct: 270 EHGRRLQQGFIKLHEEGNNRSINLFPEEPPLCSTVITNGVQVRASALFVPELSDLQDDLE 329

Query: 218 ----------SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------ 261
                     SL PEGCIINGM+FSSC L  RHW+I A ++V+SDV+GEAVIGM      
Sbjct: 330 KYLFAYSIRMSLHPEGCIINGMSFSSCQLHWRHWIIRANDIVVSDVNGEAVIGMFPLLRP 389

Query: 262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   SCT LP SSGSV GS  FVP RLA+PKG  F   V  FP+Q PDYIF
Sbjct: 390 GAEEFVYQSCTYLPTSSGSVEGSFTFVPGRLANPKGDSFLATVDRFPIQLPDYIF 444

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224093067|ref|XP_002309790.1| predicted protein [Populus trichocarpa] gi|222852693|gb|EEE90240.1| predicted protein [Populus trichocarpa]

 Score =  334 bits (857), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 186/355 (52%), Positives = 218/355 (61%), Gaps = 56/355 (15%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VK  WDR   WLT NFPE KATL KGASE +IQ+LE+ LKVKLP+PTR+LYRF DGQ   
Sbjct: 89  VKSCWDRLTSWLTANFPEVKATLGKGASEGEIQKLERILKVKLPLPTRLLYRFHDGQHFS 148

Query: 70  TDDFESIGS---MGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLAS 126
             +     +   +GLIGGY FY H VNVYL+ L  +I +T+EI R L+ P   +Y+V+A+
Sbjct: 149 DKNLSGGMAGCPLGLIGGYCFYNHSVNVYLLSLHEVISKTQEIVRHLNLPDTSEYIVVAA 208

Query: 127 SSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYE 184
           SS+Y  KFFFLNC++GQLYVGT+N  +D E++PCVP ALIS    FNSDQQQD  L   E
Sbjct: 209 SSSYVGKFFFLNCSDGQLYVGTQNFPTDAEMMPCVPQALISPVRDFNSDQQQDAMLLWLE 268

Query: 185 E----------------NFKFINLFPEEPSHCSIAVTNGMNTCLRIQFT----------- 217
           E                N K I+ FPEE   CS AVT+G+       F            
Sbjct: 269 EHGRRLHNGMIKILGKGNIKSISQFPEESPLCSTAVTSGVKVRASAVFVPEAADLEDIST 328

Query: 218 ----------SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------ 261
                     SLLPEGCIINGM FSSC L  RHWVI A +  +S+V+ EAVIG       
Sbjct: 329 KYVFAYSIRMSLLPEGCIINGMHFSSCQLHLRHWVISANDTAVSNVNAEAVIGKFPLLFP 388

Query: 262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                   SCTPLP S+GSV GS  FVP RLADPKG PFEVEV  FPLQ PDYIF
Sbjct: 389 GEKEFVYESCTPLPTSTGSVEGSFTFVPGRLADPKGIPFEVEVGRFPLQLPDYIF 443

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255577191|ref|XP_002529478.1| protein with unknown function [Ricinus communis] gi|223531036|gb|EEF32888.1| protein with unknown function [Ricinus communis]

 Score =  332 bits (852), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 185/358 (51%), Positives = 221/358 (61%), Gaps = 59/358 (16%)

Query: 10  VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
           VKR WDR K WLT NFPEA ATL++GA+E +I+  EK L+VKLP+PTR+LYRF +GQ  Q
Sbjct: 89  VKRCWDRLKNWLTTNFPEAAATLQQGATEDEIRRFEKVLEVKLPLPTRVLYRFYNGQVFQ 148

Query: 70  TDDFESIG---SMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPG---RDKYVV 123
             D  +     ++GLIGGY+FY HLVNVYL+PL  +I+ETK+I   L   G     KY+V
Sbjct: 149 EKDALTSAHGNNLGLIGGYAFYHHLVNVYLLPLDQVILETKQIVCHLGISGGFNSTKYIV 208

Query: 124 LASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LC 181
           +A+SS + EKFFFLNCTNGQLYVGT+NL  DGE++PCVPNAL+   H  +SDQQ+D  L 
Sbjct: 209 VAASSAFIEKFFFLNCTNGQLYVGTRNLPIDGEMMPCVPNALLRSVHDPSSDQQRDGMLL 268

Query: 182 CYEE----------------NFKFINLFPEEPSHCSIAVTNGMNTCLRIQFT-------- 217
             EE                N + I  FPEEP  CS A+TNG+       F         
Sbjct: 269 WLEEHGRRLQDGIIKLREERNIRTICQFPEEPPSCSTAITNGVKVRASAIFVPEAADLDG 328

Query: 218 -------------SLLPEGCIINGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM--- 261
                        SLLP+GCI+NGM F+SC LQ RHW+I A   V+SDV GE VIG    
Sbjct: 329 GSDKYWFAYSIRMSLLPDGCIVNGMYFASCQLQKRHWIIRANETVVSDVVGEGVIGKYPV 388

Query: 262 -----------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYIF 308
                      SC PLP S GSV GS  FVP RL  PKG+PFEVEVA F LQ PDYIF
Sbjct: 389 LCPGEQEFVYESCMPLPTSPGSVEGSFTFVPDRLTHPKGAPFEVEVARFHLQLPDYIF 446

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	308
TAIR|locus:2198826	436	SKIP16 "SKP1/ASK-interacting p	0.629	0.444	0.518	1.1e-74
ZFIN|ZDB-GENE-050522-269	451	fbxo3 "F-box protein 3" [Danio	0.259	0.177	0.329	3.4e-06
UNIPROTKB|A6H7H7	469	FBXO3 "F-box only protein 3" [	0.256	0.168	0.345	9.1e-05
UNIPROTKB|Q9UK99	471	FBXO3 "F-box only protein 3" [	0.256	0.167	0.345	9.2e-05
RGD|1593433	480	Fbxo3 "F-box protein 3" [Rattu	0.25	0.160	0.341	0.00028
MGI|MGI:1929084	480	Fbxo3 "F-box protein 3" [Mus m	0.256	0.164	0.333	0.00062

TAIR|locus:2198826 SKIP16 "SKP1/ASK-interacting protein 16" [Arabidopsis thaliana (taxid:3702)]

 Score = 505 (182.8 bits), Expect = 1.1e-74, Sum P(2) = 1.1e-74
 Identities = 113/218 (51%), Positives = 139/218 (63%)

Query:    10 VKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ 69
             V+  WD  K+WLT NFPEAKATLRKG +E D+QE E SLKVKLP+PTR+LYRF DGQE  
Sbjct:    89 VRLCWDNLKQWLTLNFPEAKATLRKGVTEDDLQEFETSLKVKLPLPTRLLYRFVDGQELS 148

Query:    70 TDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKE-IRRQLHFPGRDKYVVLASSS 128
             + +    GS+GLIGGYS Y H VNVYL+PL  ++ ETKE   R L F  R   +V+A+S 
Sbjct:   149 SPNGLD-GSLGLIGGYSAYSHDVNVYLLPLKEVMRETKESFMRDLGFSSRLDLIVMAASV 207

Query:   129 TYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNALISLGHSFNSDQQQD--LCCYEE- 185
               S K F L+CT GQL+ GT N     +++PCVP+AL+   H  N DQQQD  L   EE 
Sbjct:   208 VASLKIFLLDCTTGQLFTGTSNR----QLLPCVPDALVRSVHDTNGDQQQDAMLLWLEEH 263

Query:   186 ---------------NFKFINLFPEEPSHCSIAVTNGM 208
                            N K I+LFPE P  CS++VTNG+
Sbjct:   264 GRRLQTGTINVRQQNNVKSISLFPEIPPLCSVSVTNGV 301

GO:0005634 "nucleus" evidence=ISM

GO:0008150 "biological_process" evidence=ND

GO:0005515 "protein binding" evidence=IPI

GO:0019005 "SCF ubiquitin ligase complex" evidence=IPI

GO:0019243 "methylglyoxal catabolic process to D-lactate" evidence=RCA

ZFIN|ZDB-GENE-050522-269 fbxo3 "F-box protein 3" [Danio rerio (taxid:7955)]

 Score = 124 (48.7 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
 Identities = 27/82 (32%), Positives = 42/82 (51%)

Query:     4 FDFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFC 63
             FD+Y  +K+ WD  K +L +  P   A+L++G  E ++  +E  +  KLP   R  YR  
Sbjct:    86 FDYYSTLKKAWDDLKNFLNQKCPRMIASLKEGVREDELDTIEAQIGCKLPNDYRCSYRIH 145

Query:    64 DGQECQTDDFESIGSMGLIGGY 85
             +GQ+        +GSM L   Y
Sbjct:   146 NGQKLVVPGL--MGSMALSNHY 165

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

UNIPROTKB|A6H7H7 FBXO3 "F-box only protein 3" [Bos taurus (taxid:9913)]

 Score = 120 (47.3 bits), Expect = 9.1e-05, Sum P(2) = 9.1e-05
 Identities = 28/81 (34%), Positives = 40/81 (49%)

Query:     5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
             D Y  +K+ WD  KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +
Sbjct:    91 DHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150

Query:    65 GQECQTDDFESIGSMGLIGGY 85
             GQ+        +GSM L   Y
Sbjct:   151 GQKLVVPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

UNIPROTKB|Q9UK99 FBXO3 "F-box only protein 3" [Homo sapiens (taxid:9606)]

 Score = 120 (47.3 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
 Identities = 28/81 (34%), Positives = 40/81 (49%)

Query:     5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
             D Y  +K+ WD  KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +
Sbjct:    91 DHYAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150

Query:    65 GQECQTDDFESIGSMGLIGGY 85
             GQ+        +GSM L   Y
Sbjct:   151 GQKLVVPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

GO:0004842 "ubiquitin-protein ligase activity" evidence=TAS

GO:0006508 "proteolysis" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

GO:0016567 "protein ubiquitination" evidence=TAS

RGD|1593433 Fbxo3 "F-box protein 3" [Rattus norvegicus (taxid:10116)]

 Score = 115 (45.5 bits), Expect = 0.00028, Sum P(2) = 0.00028
 Identities = 27/79 (34%), Positives = 39/79 (49%)

Query:     7 YDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQ 66
             Y  +K+ WD  KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +GQ
Sbjct:    93 YAAIKKAWDDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHNGQ 152

Query:    67 ECQTDDFESIGSMGLIGGY 85
             +        +GSM L   Y
Sbjct:   153 KLVVPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

MGI|MGI:1929084 Fbxo3 "F-box protein 3" [Mus musculus (taxid:10090)]

 Score = 112 (44.5 bits), Expect = 0.00062, Sum P(2) = 0.00062
 Identities = 27/81 (33%), Positives = 39/81 (48%)

Query:     5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCD 64
             D Y  +K+ W   KK+L    P    +L++GA E D+  +E  +  KLP   R  YR  +
Sbjct:    91 DHYAAIKKAWRDLKKYLEPRCPRMVLSLKEGAREEDLDAVEAQIGCKLPDDYRCSYRIHN 150

Query:    65 GQECQTDDFESIGSMGLIGGY 85
             GQ+        +GSM L   Y
Sbjct:   151 GQKLVVPGL--LGSMALSNHY 169

GO:0005634 "nucleus" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	308
pfam04379	90	pfam04379, DUF525, Protein of unknown function (DU	4e-09
COG4282	191	COG4282, SMI1, Protein involved in beta-1,3-glucan	2e-08
PRK05461	127	PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Rev	6e-08
COG2967	126	COG2967, ApaG, Uncharacterized protein affecting M	0.002
smart00860	127	smart00860, SMI1_KNR4, SMI1 / KNR4 family	0.003

>gnl|CDD|202989 pfam04379, DUF525, Protein of unknown function (DUF525)

 Score = 52.5 bits (127), Expect = 4e-09
 Identities = 21/65 (32%), Positives = 27/65 (41%), Gaps = 13/65 (20%)

Query: 232 SSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLM 278
            +  L  RHW+I   N  + +V GE V+G              S TPL   SGS+ GS  
Sbjct: 26  ETVQLLSRHWIITDANGKVEEVRGEGVVGEQPLLAPGESFEYTSGTPLETPSGSMEGSYT 85

Query: 279 FVPAR 283
            V   
Sbjct: 86  MVDED 90

Members of this family include the bacterial protein ApaG and the C termini of some F-box proteins (pfam00646). F-box proteins contain a carboxyl-terminal domain that interacts with protein substrates, so this family may be involved in protein-protein interaction. The function of ApaG proteins is unknown, but mutations in the Salmonella typhimurium ApaG homologue corD gives a phenotype of low-level cobalt resistance and decreased magnesium efflux by effects on the CorA magnesium transport system. Length = 90

>gnl|CDD|226732 COG4282, SMI1, Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]

 Score = 52.6 bits (126), Expect = 2e-08
 Identities = 20/54 (37%), Positives = 24/54 (44%)

Query: 14 WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQE 67
          W R   W+ E+ P+    LR GA+  DIQ  E  L   LP   R      DGQ 
Sbjct: 11 WRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQP 64

Length = 191

>gnl|CDD|180098 PRK05461, apaG, CO2+/MG2+ efflux protein ApaG; Reviewed

 Score = 50.1 bits (121), Expect = 6e-08
 Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 18/82 (21%)

Query: 236 LQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGSVRGSLMFVPA 282
           L  RHW+I   N  + +V GE V+G              S   L   SG+++G    V  
Sbjct: 47  LLSRHWLITDANGRVQEVRGEGVVGEQPVLAPGESFEYTSGAVLETPSGTMQGHYQMV-- 104

Query: 283 RLADPKGSPFEVEVAEFPLQQP 304
              D  G  FEV +  F L  P
Sbjct: 105 ---DEDGERFEVPIPPFRLAVP 123

Length = 127

>gnl|CDD|225515 COG2967, ApaG, Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

 Score = 37.3 bits (87), Expect = 0.002
 Identities = 22/79 (27%), Positives = 34/79 (43%), Gaps = 18/79 (22%)

Query: 239 RHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGSVRGSLMFVPARLA 285
           R+W+I   N  +++V GE V+G              S  PL   SG+++G    +     
Sbjct: 49  RYWLITDGNGRVTEVEGEGVVGEQPLLAPGEEYQYTSGCPLDTPSGTMQGHYEMI----- 103

Query: 286 DPKGSPFEVEVAEFPLQQP 304
           D  G  F+V +  F L  P
Sbjct: 104 DEDGETFDVAIPVFRLAVP 122

Length = 126

>gnl|CDD|214864 smart00860, SMI1_KNR4, SMI1 / KNR4 family

 Score = 36.8 bits (85), Expect = 0.003
 Identities = 16/69 (23%), Positives = 26/69 (37%)

Query: 35  GASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNV 94
            A+E +I ELEK L +KLP   +      +G E        +G + L+        + + 
Sbjct: 1   PATEEEIAELEKKLGIKLPEDYKEFLLLYNGGELGGSAELPLGGLSLLDLLELEAAIEDQ 60

Query: 95  YLIPLSHII 103
             I      
Sbjct: 61  EEIDSDIEE 69

Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation. Length = 127

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	308
KOG4408	386	consensus Putative Mg2+ and Co2+ transporter CorD	100.0
COG2967	126	ApaG Uncharacterized protein affecting Mg2+/Co2+ t	100.0
PRK05461	127	apaG CO2+/MG2+ efflux protein ApaG; Reviewed	100.0
PF04379	90	DUF525: Protein of unknown function (DUF525); Inte	99.84
COG4282	191	SMI1 Protein involved in beta-1,3-glucan synthesis	99.64
PF09346	130	SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro:	98.3
smart00860	129	SMI1_KNR4 SMI1 / KNR4 family. Proteins in this fam	98.18
PF14567	132	SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A.	97.52
PF14568	120	SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A.	97.23

>KOG4408 consensus Putative Mg2+ and Co2+ transporter CorD [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1e-43  Score=334.85  Aligned_cols=267  Identities=25%  Similarity=0.370  Sum_probs=206.3

Q ss_pred             ChHHHHHHHHH-HHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccc
Q 046173            6 FYDDVKRHWDR-FKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGG   84 (308)
Q Consensus         6 ~~~~v~~~W~r-Ie~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG   84 (308)
                      .+.+|.-.|.- ++.|...|.|+.-++|++||+|+|++++|+.+|++||.++|++||.||||...        .+|++++
T Consensus        80 yvgvv~~~w~arlk~wd~ln~~~~~aal~ega~e~dl~a~e~s~~~kLp~~~r~~yrev~Gq~l~--------~yqvLi~  151 (386)
T KOG4408|consen   80 YVGVVLFPWAARLKDWDDLNKYLEPAALKEGAREPDLDAVEASIGCKLPDDYRCSYREVKGQTLT--------FYQVLID  151 (386)
T ss_pred             cceEEEEechHhhhhhhhcccccccchhhccCcccchhhhhhcccccCCCccccchhhcCCeEEe--------ehheeee
Confidence            34455666876 89999999999999999999999999999999999999999999999999986        7899999


Q ss_pred             eecccceeeeeccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEeccCCcEEEeeeeccCCCceeecCCcc
Q 046173           85 YSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGTKNLLSDGEIIPCVPNA  164 (308)
Q Consensus        85 ~~~y~~~~n~~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt~~~~~~g~~~pc~p~~  164 (308)
                      +..|+|.+       .++..++...-  .+++.+...+..+++-.+..+-.+|.|+.++..-|+     . |.++|.|++
T Consensus       152 ~~d~sH~~-------~ev~~e~~t~~--~nf~~r~~L~y~ipgld~v~hedilpyts~e~~~g~-----h-eLf~~~pdl  216 (386)
T KOG4408|consen  152 MRDCSHIR-------SEVQTEAVTFL--GNFDSRQGLKYAIPGLDYVSHEDILPYTSSEAVPGQ-----H-ELFDQFPDL  216 (386)
T ss_pred             cccCcccc-------chhhhhhhhhh--cCcccccchheecccceeEeeccccccccccccccc-----h-hhhhhhhhh
Confidence            99999977       23333322211  244433333333333335557889999988866554     2 789999985


Q ss_pred             ccccCCCCCcccccccc--ccc-cccceeeecCCCCCcccccccCCcEEEEEeEE----ccCCCCcce------ecC-CC
Q 046173          165 LISLGHSFNSDQQQDLC--CYE-ENFKFINLFPEEPSHCSIAVTNGMNTCLRIQF----TSLLPEGCI------ING-MT  230 (308)
Q Consensus       165 ~i~~~~~~~~~~~~d~~--w~~-~~~~~i~l~P~~~~~~s~~~T~gI~V~v~~~y----~s~~p~~~~------i~n-~~  230 (308)
                      +..++ +.+....||+|  |.+ ++...   +|..  -...++|+||+|+|+++|    ++..|.++.      |+| ..
T Consensus       217 ~r~~~-~~~~f~~q~tl~~W~e~kn~gw---l~~~--dVh~etTenI~Vtvstfylge~s~~~pp~YwwrY~IRien~l~  290 (386)
T KOG4408|consen  217 ARDPA-AIPPFVIQDTLTAWQESKNHGW---LPIR--DVHRETTENIRVTVSTFYLGERSSVHPPVYWWRYCIRIENALP  290 (386)
T ss_pred             hcCcc-cCCchhhhHHHHHHHhcCCCCC---cChh--hCChhhcCCeEEEEEEeeecccccCCCCceEEEEEEEeecCCC
Confidence            55554 44667788999  965 44333   2222  134589999999999999    444454443      899 89


Q ss_pred             CCcEEEecceEEEEeCCCceEEEEcCeeeee--------------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEe
Q 046173          231 FSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM--------------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEV  296 (308)
Q Consensus       231 ~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~--------------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~I  296 (308)
                      ..+|||.+|||+|+..||.+++|+|+||||+              ||++|+|++|+|+|.|.|.     +++|..|+|.|
T Consensus       291 e~svQLreRhWrI~slng~le~V~G~gVVGk~PiLs~g~paFqYsSc~sl~ttsGhMwGtF~fe-----r~~G~lfDvki  365 (386)
T KOG4408|consen  291 EKSVQLRERHWRIFSLNGTLETVRGRGVVGKEPILSAGRPAFQYSSCVSLQTTSGHMWGTFRFE-----REDGSLFDVKI  365 (386)
T ss_pred             CcceEEeEeeEEEEecccchhhccccceeccccccCCCCcceEEeeeeeeccCCccceeeEEEE-----ecCCccccccC
Confidence            9999999999999999999999999999998              9999999999999988777     66778888888


Q ss_pred             cCccCCCCCC
Q 046173          297 AEFPLQQPDY  306 (308)
Q Consensus       297 p~F~L~~P~~  306 (308)
                      |+|.|.+|.+
T Consensus       366 p~F~~es~ef  375 (386)
T KOG4408|consen  366 PPFSLESPEF  375 (386)
T ss_pred             CceEeecccc
Confidence            7777766543

>COG2967 ApaG Uncharacterized protein affecting Mg2+/Co2+ transport [Inorganic ion transport and metabolism]

Probab=100.00  E-value=1.1e-34  Score=237.59  Aligned_cols=100  Identities=28%  Similarity=0.514  Sum_probs=91.4

Q ss_pred             ccccCCcEEEEEeEE---ccCCCCc--ce------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee---------
Q 046173          202 IAVTNGMNTCLRIQF---TSLLPEG--CI------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM---------  261 (308)
Q Consensus       202 ~~~T~gI~V~v~~~y---~s~~p~~--~~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~---------  261 (308)
                      .+.|..|+|+|++.|   +|. |++  +.      |+|.++.+|||++|||.|||+||+++||+|+||||+         
T Consensus         2 ~~~~~~I~V~V~~~yleeQS~-P~~~RyvfaYtitI~N~g~~~vqLlsR~W~ITd~~g~v~eV~G~GVVGeQP~l~PG~~   80 (126)
T COG2967           2 MASSPDIEVQVQPRYLEEQSS-PEEERYVFAYTVTIRNLGEVPVQLLSRYWLITDGNGRVTEVEGEGVVGEQPLLAPGEE   80 (126)
T ss_pred             CcccCceEEEEeeEEccccCC-cccceEEEEEEEEEecCCCccceeeeeEEEEecCCCcEEEEEcCceeccccccCCCCc
Confidence            367899999999999   443 331  21      999999999999999999999999999999999998         


Q ss_pred             ----cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173          262 ----SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI  307 (308)
Q Consensus       262 ----S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i  307 (308)
                          |||+|+||+|.|+|+|.|+     +++|+.|+|.||+|+|++|..+
T Consensus        81 y~YtSg~~l~Tp~G~M~GhY~M~-----~e~G~~F~v~Ip~F~L~vP~~~  125 (126)
T COG2967          81 YQYTSGCPLDTPSGTMQGHYEMI-----DEDGETFDVAIPVFRLAVPGLL  125 (126)
T ss_pred             eEEcCCcCccCCcceEEEEEEEe-----cCCCcEEEeecCceEecCcccc
Confidence                9999999999999999999     8999999999999999999865

>PRK05461 apaG CO2+/MG2+ efflux protein ApaG; Reviewed

Probab=100.00  E-value=4.8e-34  Score=239.98  Aligned_cols=99  Identities=32%  Similarity=0.536  Sum_probs=91.7

Q ss_pred             cccccCCcEEEEEeEEccCCCCcc-------e------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee------
Q 046173          201 SIAVTNGMNTCLRIQFTSLLPEGC-------I------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM------  261 (308)
Q Consensus       201 s~~~T~gI~V~v~~~y~s~~p~~~-------~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~------  261 (308)
                      .+++|+||+|+|++.|   +|+++       +      |+|.++.+|||++|||+|+|++|++++|+|+||||+      
T Consensus         2 ~~~~t~gI~V~V~~~y---~~e~S~p~~~~y~f~Y~ItI~N~~~~~vQL~~R~W~I~d~~g~~~~V~G~GVVG~qP~L~P   78 (127)
T PRK05461          2 YSAVTYGIEVSVQPRY---LEEQSDPEEGRYVFAYTITIENLGRVPVQLLSRHWLITDANGRVQEVRGEGVVGEQPVLAP   78 (127)
T ss_pred             cccccCCEEEEEEEEE---CcccCCCcCCEEEEEEEEEEEECCCCCEEEEeeeEEEEECCCCEEEEECCceecCCceECC
Confidence            4678999999999999   44433       1      999999999999999999999999999999999998      


Q ss_pred             -------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173          262 -------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI  307 (308)
Q Consensus       262 -------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i  307 (308)
                             |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|+|.+|..|
T Consensus        79 Ge~F~Y~S~~~l~tp~G~M~G~y~~~-----~~~G~~F~v~Ip~F~L~~P~~l  126 (127)
T PRK05461         79 GESFEYTSGAVLETPSGTMQGHYQMV-----DEDGERFEVPIPPFRLAVPRTL  126 (127)
T ss_pred             CCCeEEeCCCCccCCCEEEEEEEEEE-----eCCCCEEEEEccCEEcCCCccC
Confidence                   9999999999999999999     7899999999999999999754

>PF04379 DUF525: Protein of unknown function (DUF525); InterPro: IPR007474 This domain is found in the bacterial protein ApaG and at the C termini of some F-box proteins (IPR001810 from INTERPRO)

Probab=99.84  E-value=1e-21  Score=156.28  Aligned_cols=55  Identities=38%  Similarity=0.597  Sum_probs=51.4

Q ss_pred             ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------------cCccccCCeeEEEEEEEEE
Q 046173          226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLMFV  280 (308)
Q Consensus       226 i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-------------S~~~l~t~~G~M~G~y~~~  280 (308)
                      |+|.+..+|||++|||+|+|++|++++|+|+||||+             |||+|+||.|+|+|+|+|+
T Consensus        20 I~N~~~~~vqL~sR~W~I~d~~g~~~~V~G~GVVG~~P~L~pGe~f~Y~S~~~l~t~~G~M~G~y~~~   87 (90)
T PF04379_consen   20 IENHSDESVQLLSRHWIITDADGHVEEVEGEGVVGQQPVLAPGESFEYTSGCPLSTPSGSMEGSYTMV   87 (90)
T ss_dssp             EEE-SSS-EEEEEEEEEEEETTS-EEEEEEESBTTB--EE-TTEEEEEEEEEEESSSEEEEEEEEEEE
T ss_pred             EEECCCCCEEEEccEEEEEeCCCCEEEEECCceEccCceECCCCcEEEcCCCCcCCCCEEEEEEEEEE
Confidence            999999999999999999999999999999999998             9999999999999999998

F-box proteins contain a carboxy-terminal domain that interacts with protein substrates []. The ApaG domain is ~125 amino acids in length, and is named after the bacterial ApaG protein, of which it forms the core. The Salmonella typhimurium ApaG domain protein, CorD, is involved in Co(2+) resistance and Mg(2+) efflux. Tertiary structures from different ApaG proteins show a fold of several beta-sheets. The ApaG domain may be involved in protein-protein interactions which could be implicated in substrate-specificity [, , ].; PDB: 2F1E_A 1XVS_A 1TZA_A 1XQ4_D.

>COG4282 SMI1 Protein involved in beta-1,3-glucan synthesis [Carbohydrate transport and metabolism]

Probab=99.64  E-value=5.1e-16  Score=134.80  Aligned_cols=90  Identities=28%  Similarity=0.400  Sum_probs=79.4

Q ss_pred             CChHHHHHHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccc
Q 046173            5 DFYDDVKRHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGG   84 (308)
Q Consensus         5 ~~~~~v~~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG   84 (308)
                      +....+..+|+||+.|.++|.|+....|+||||.++|+.+|++||++||+|+|++|.+||||...+.      ..|    
T Consensus         2 ~~~se~slawrrId~W~aeh~pdl~~~l~pgat~~di~~aE~dlg~tlPpdvResl~iHDGq~dgs~------ptg----   71 (191)
T COG4282           2 PNQSEPSLAWRRIDTWVAEHHPDLLPFLRPGATCGDIQRAEADLGRTLPPDVRESLAIHDGQPDGSP------PTG----   71 (191)
T ss_pred             CCCchHHHHHHHHHHHHHhcCcccccccCCCccHHHHHHHHHHhcCcCChHHHHHHHhhCCCcCCCC------ccc----
Confidence            4567788999999999999999999999999999999999999999999999999999999997631      222    


Q ss_pred             eecccceeeeeccchhHHHHHHHHHHHHhC
Q 046173           85 YSFYGHLVNVYLIPLSHIIMETKEIRRQLH  114 (308)
Q Consensus        85 ~~~y~~~~n~~LLpL~~i~~~~~~~r~~~~  114 (308)
                                .||.|+++..+++-||+...
T Consensus        72 ----------~ll~le~~~~~~~aWrdlaq   91 (191)
T COG4282          72 ----------LLLRLEPLDLELIAWRDLAQ   91 (191)
T ss_pred             ----------chhhhHHHHHHHHHHHHHHH
Confidence                      57888999988888888653

>PF09346 SMI1_KNR4: SMI1 / KNR4 family (SUKH-1); InterPro: IPR018958 Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation [, ]

Probab=98.30  E-value=5.4e-07  Score=72.55  Aligned_cols=34  Identities=32%  Similarity=0.414  Sum_probs=20.9

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCccc
Q 046173           35 GASEADIQELEKSLKVKLPVPTRILYRFCDGQEC   68 (308)
Q Consensus        35 gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~   68 (308)
                      |||+++|+++|+.||++||++||+||+.|++...
T Consensus         1 p~t~~~I~~~E~~lg~~LP~~yk~fl~~~~~~~~   34 (130)
T PF09346_consen    1 PATEEEIQELEEKLGVRLPDDYKEFLKEHNNGGI   34 (130)
T ss_dssp             ---HHHHHHHHHHHTS---HHHHHHHH-------
T ss_pred             CCCHHHHHHHHHHhCCCCcHHHHHHHHhhccccc
Confidence            7899999999999999999999999998744443

Yeast members of this family are involved in the regulation of cell wall assembly. Saccharomyces cerevisiae (Baker's yeast) protein KNR4 (SMI1) has a regulatory role in chitin deposition and in cell wall assembly []. It was originally identified as a regulator of chitin synthase expression (acting as a repressor) [] and of 1,3-beta-glucan synthase levels []. It was shown to localise in patches at presumptive bud sites in unbudded cells and at the incipient bud site during bud emergence []. KNR4 is believed to connect the PKC1-SLT2 MAPK pathway with cell proliferation. It has been shown to interact with BCK2, a gene involved in cell cycle progression in S. cerevisiae (forming a complex) to allow PKC1 to coordinate the cell cycle (cell proliferation) with cell wall integrity [, ]. PKC1 plays an essential role in cell wall integrity and cell proliferation through a bifurcated PKC1/mitogen-activated protein (MAP) kinase pathway. KNR4 also interacts with the tyrosine-tRNA synthetase protein encoded by TYS1 and is involved in sporulation process []. Note: previously reported evidence that KNR4 may interact with nuclear matrix-association region [] may be due to an artefact [].; PDB: 3D5P_A 2ICG_A.

>smart00860 SMI1_KNR4 SMI1 / KNR4 family

Probab=98.18  E-value=1.6e-06  Score=68.09  Aligned_cols=35  Identities=40%  Similarity=0.508  Sum_probs=33.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccc
Q 046173           35 GASEADIQELEKSLKVKLPVPTRILYRFCDGQECQ   69 (308)
Q Consensus        35 gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~   69 (308)
                      |+|+++|+++|+.||++||++||+||+.|||....
T Consensus         1 ~~s~~~i~~~e~~lg~~LP~~y~~f~~~~~g~~~~   35 (129)
T smart00860        1 PASEEEIAELEKKLGIKLPEDYKEFLLLHNGGELG   35 (129)
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCEEeC
Confidence            68999999999999999999999999999998765

Proteins in this family are involved in the regulation of 1,3-beta-glucan synthase activity and cell-wall formation.

>PF14567 SUKH_5: SMI1-KNR4 cell-wall; PDB: 2PAG_A

Probab=97.52  E-value=0.00048  Score=58.71  Aligned_cols=91  Identities=15%  Similarity=0.220  Sum_probs=46.6

Q ss_pred             CCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeeeeccchhHHHHHHHHHHHHh
Q 046173           34 KGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQL  113 (308)
Q Consensus        34 ~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~~LLpL~~i~~~~~~~r~~~  113 (308)
                      .++++++|.++|+.||++||++||++++...+-..              |++.-+.-  +..--++. +.+.++..|+ .
T Consensus        20 ~lpd~e~I~~~Ee~L~i~lP~eyk~fL~~~s~v~~--------------G~~E~~~i--~~~~s~~~-l~e~~~~ar~-~   81 (132)
T PF14567_consen   20 ELPDDEQIVEAEEQLGISLPEEYKEFLLEASDVIY--------------GGLEPVGI--GDPPSHTY-LPEVTADARS-I   81 (132)
T ss_dssp             ----HHHHHHHHHHHT----HHHHHHHHHHTT--B--------------TTB-B-BS--S-TTSTTB-HHHHHHHHHH-H
T ss_pred             CCCCHHHHHHHHHHHCCCCCHHHHHHHHHCCCeee--------------cceEEEEE--EcCCCccc-HHHHHHHHHH-c
Confidence            35799999999999999999999999998654433              33222110  01111112 5666677777 6


Q ss_pred             CCCCCCceEEEeecCCCcceeEEEeccCCcEEEee
Q 046173          114 HFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGT  148 (308)
Q Consensus       114 ~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt  148 (308)
                      +++  ..+++++..   ++-|+.|+ .+|+|..+.
T Consensus        82 glP--~~~ipice~---~~~yYcl~-~~g~V~~W~  110 (132)
T PF14567_consen   82 GLP--RELIPICED---GGDYYCLD-QEGEVVYWS  110 (132)
T ss_dssp             T----TTSEEEEEE---TTEEEEE--TTS-EEEE-
T ss_pred             CCC--hhheeEEec---CCcEEEEe-CCCeEEEec
Confidence            665  236666554   34566777 678865553

>PF14568 SUKH_6: SMI1-KNR4 cell-wall; PDB: 2PRV_A

Probab=97.23  E-value=0.00021  Score=57.50  Aligned_cols=31  Identities=35%  Similarity=0.458  Sum_probs=24.4

Q ss_pred             HHHHHHHHHHcCCCCCHHHHHhhhhhCCccc
Q 046173           38 EADIQELEKSLKVKLPVPTRILYRFCDGQEC   68 (308)
Q Consensus        38 e~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~   68 (308)
                      |++|+.+|+.||++||.+||.+++.+||-..
T Consensus         1 ee~I~~~E~~Lg~~lP~~Yk~fL~~~~gg~~   31 (120)
T PF14568_consen    1 EEEIEEAEKKLGVKLPEDYKEFLKEYNGGYF   31 (120)
T ss_dssp             -HHHHHHHHHHTS---HHHHHHHHHC-SEEE
T ss_pred             ChHHHHHHHHhCCCCCHHHHHHHHHcCCEEE
Confidence            6899999999999999999999999999764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	308
1xq4_A	139	Protein APAG; all beta protein, structural genomic	6e-11
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	3e-10
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	6e-10
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	1e-09
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	2e-05

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1 Length = 139

 Score = 58.8 bits (142), Expect = 6e-11
 Identities = 27/95 (28%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGS 272
           I         +  RHW+I      + +V G  V+G              S  PLP   G+
Sbjct: 41  ITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGT 100

Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307
           +RG+   V        G PFEV +AEF L  P  +
Sbjct: 101 MRGTYHCV-----GENGIPFEVPIAEFLLAMPRTL 130

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1 Length = 134

 Score = 56.8 bits (137), Expect = 3e-10
 Identities = 23/95 (24%), Positives = 33/95 (34%), Gaps = 18/95 (18%)

Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGS 272
           I  +   +  L+ RHW+I   N   S+V G  V+G              S T L    G 
Sbjct: 36  IINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGI 95

Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307
           + G+   V        G  F   +  F L  P  +
Sbjct: 96  MYGTYGMV-----SESGEHFNAIIKPFRLATPGLL 125

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV} Length = 127

 Score = 55.3 bits (133), Expect = 6e-10
 Identities = 23/95 (24%), Positives = 29/95 (30%), Gaps = 18/95 (18%)

Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGS 272
           I         L  RHW I   N     V GE V+G              S   L    G 
Sbjct: 37  IQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLRPGEAFHYTSGVLLETEQGQ 96

Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307
           ++G    V        G+ F   +A F L  P  +
Sbjct: 97  MQGHYDMV-----ADDGTEFIAPIAAFVLSVPRTL 126

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1 Length = 126

 Score = 54.9 bits (132), Expect = 1e-09
 Identities = 22/95 (23%), Positives = 37/95 (38%), Gaps = 18/95 (18%)

Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIG-------------MSCTPLPGSSGS 272
           I  ++  +  L  R W+I   +   + V G+ V+G              S T L    G 
Sbjct: 36  IKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGV 95

Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI 307
           ++G  + +     D +G  F VE+  F L  P  +
Sbjct: 96  MQGQYLMI-----DEQGESFTVEIEPFRLAVPHVL 125

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 45.2 bits (106), Expect = 2e-05
 Identities = 38/264 (14%), Positives = 79/264 (29%), Gaps = 66/264 (25%)

Query: 9   DVKRHWDRFKKWLTENFPEA-KATLRKGASEADIQELEKSLKV---KLPVPTRILYRF-C 63
           D    WD +K    +      +++L      A+ +++   L V      +PT +L     
Sbjct: 339 DGLATWDNWKHVNCDKLTTIIESSLNV-LEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF 397

Query: 64  DGQECQTDDFESIGSMGLIGGYSFYGHLVN----VYLIPLSHIIMETK---EIRRQLHFP 116
           D  +    D   +  +  +  YS    LV        I +  I +E K   E    LH  
Sbjct: 398 DVIK---SDVMVV--VNKLHKYS----LVEKQPKESTISIPSIYLELKVKLENEYALHRS 448

Query: 117 GRDKYVVLASSST----------YSEKFFFL-----NCTNGQLYVGTKNLLSDGEIIPCV 161
             D Y +  +  +          Y   +  +     N  + +     + +  D   +   
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYF--YSHIGHHLKNIEHPERMTLFRMVFLDFRFL--- 503

Query: 162 PNALISLGHSFNS-----DQQQDLCCYEENFKFINLFPEEPSH-------------CSIA 203
              +     ++N+     +  Q L  Y+    +I     +P +                 
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYK---PYI--CDNDPKYERLVNAILDFLPKIEEN 558

Query: 204 VTNGMNTCLRIQFTSLLPEGCIIN 227
           +     T L ++   +  +  I  
Sbjct: 559 LICSKYTDL-LRIALMAEDEAIFE 581

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	308
2f1e_A	127	Protein APAG; APAG protein, xanthomonas axonopodis	100.0
1xvs_A	126	Protein APAG; MCSG APC26324, midwest center for st	100.0
1tza_A	134	APAG protein, SOR45; structural genomics, PSI, pro	100.0
1xq4_A	139	Protein APAG; all beta protein, structural genomic	100.0
3d5p_A	144	Putative glucan synthesis regulator of SMI1/KNR4;	98.73
2icg_A	160	LIN2918 protein; hypothetical protein, structural	98.62
2prv_A	153	Uncharacterized protein YOBK; structural genomics,	98.61
2pag_A	135	Hypothetical protein; nysgx, target 10412I, novel	97.93

>2f1e_A Protein APAG; APAG protein, xanthomonas axonopodis PV.citri, structural genomics, unknown function; NMR {Xanthomonas axonopodis PV}

Probab=100.00  E-value=1.1e-35  Score=248.71  Aligned_cols=100  Identities=25%  Similarity=0.334  Sum_probs=85.7

Q ss_pred             ccccccCCcEEEEEeEEccCCCCcce-------------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-----
Q 046173          200 CSIAVTNGMNTCLRIQFTSLLPEGCI-------------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-----  261 (308)
Q Consensus       200 ~s~~~T~gI~V~v~~~y~s~~p~~~~-------------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-----  261 (308)
                      |.+++|+||+|+|++.|   +|++|.             |+|.++.+|||++|||+|+|++|++++|+|+||||+     
T Consensus         1 ~~~~~t~~I~V~V~~~y---~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~   77 (127)
T 2f1e_A            1 MQDDPRYRVEVEVSPRF---LAHQSTPDEGRYAFAYSIRIQNAGAVPARLVARHWQITDGNGRTEQVDGEGVVGEQPWLR   77 (127)
T ss_dssp             -----CCCEEEEEEEEE---CSTTCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEESSBTTBCCEEC
T ss_pred             CccceECCEEEEEEEEE---chhhCCCcCCEEEEEEEEEEEeCCCCCEEEEeceEEEEeCCCCEEEEECCCeecCCCcCC
Confidence            34689999999999999   555441             999999999999999999999999999999999998     


Q ss_pred             --------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173          262 --------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI  307 (308)
Q Consensus       262 --------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i  307 (308)
                              |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|+|++|.+|
T Consensus        78 PGe~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l  126 (127)
T 2f1e_A           78 PGEAFHYTSGVLLETEQGQMQGHYDMV-----ADDGTEFIAPIAAFVLSVPRTL  126 (127)
T ss_dssp             TTCEEEEEEEEEESSSCEEEEEEEEEE-----ETTCCEEEEEEEEEEEC-----
T ss_pred             CCCceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCCccc
Confidence                    9999999999999999999     7889999999999999999865

>1xvs_A Protein APAG; MCSG APC26324, midwest center for structural genomics, structure initiative, PSI, structural genomics, unknown FUN; 2.01A {Vibrio cholerae} SCOP: b.1.23.1

Probab=100.00  E-value=3.2e-35  Score=245.57  Aligned_cols=98  Identities=23%  Similarity=0.439  Sum_probs=91.1

Q ss_pred             ccccCCcEEEEEeEEccCCCCcce-------------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------
Q 046173          202 IAVTNGMNTCLRIQFTSLLPEGCI-------------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------  261 (308)
Q Consensus       202 ~~~T~gI~V~v~~~y~s~~p~~~~-------------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-------  261 (308)
                      +++|+||+|+|++.|   +|++|.             |+|.++.+|||++|||+|+|++|++++|+|+||||+       
T Consensus         2 ~~~t~~I~V~V~~~y---~~e~S~p~~~~y~faY~I~I~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVG~qP~L~PG   78 (126)
T 1xvs_A            2 DVSLPCIKIQVQTRY---IEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAN   78 (126)
T ss_dssp             BCSCCCEEEEEEEEE---CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTT
T ss_pred             CcccCCEEEEEEEEE---chhcCCCcCCEEEEEEEEEEEECCCCCEEEEecEEEEEeCCCCEEEEECCceEcCCCcCCCC
Confidence            578999999999999   454431             999999999999999999999999999999999998       


Q ss_pred             ------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173          262 ------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI  307 (308)
Q Consensus       262 ------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i  307 (308)
                            |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|+|++|.+|
T Consensus        79 e~f~YtSg~~L~tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l  125 (126)
T 1xvs_A           79 DEYTYSSGTALDTPVGVMQGQYLMI-----DEQGESFTVEIEPFRLAVPHVL  125 (126)
T ss_dssp             CEEEEEEEEEESSSEEEEEEEEEEE-----CTTSCEEEEEEEEEEEECCCC-
T ss_pred             CceEEeCCcCcCCCcEEEEEEEEEE-----ECCCCEEEEECCceEcCCcccc
Confidence                  9999999999999999999     7899999999999999999875

>1tza_A APAG protein, SOR45; structural genomics, PSI, protein structure initiative, NORT structural genomics consortium, NESG, unknown function; 2.40A {Shewanella oneidensis} SCOP: b.1.23.1

Probab=100.00  E-value=2.1e-34  Score=242.82  Aligned_cols=100  Identities=26%  Similarity=0.408  Sum_probs=89.9

Q ss_pred             ccccCCcEEEEEeEE---ccCCCC-cce------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee----------
Q 046173          202 IAVTNGMNTCLRIQF---TSLLPE-GCI------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM----------  261 (308)
Q Consensus       202 ~~~T~gI~V~v~~~y---~s~~p~-~~~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~----------  261 (308)
                      +++|+||+|+|++.|   +|...+ +++      |+|.++.+|||++|||+|+|++|++++|+|+||||+          
T Consensus         2 ~~~t~~I~V~V~~~y~~e~S~p~~~~y~faY~ItI~N~~~~~vQL~sRhW~Itd~~g~~~eV~G~GVVGeqP~L~PGe~F   81 (134)
T 1tza_A            2 SALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAY   81 (134)
T ss_dssp             -CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEE
T ss_pred             CCccCCEEEEEEEEEchhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEEcCceEcCCCcCCCCCce
Confidence            367999999999999   443222 121      999999999999999999999999999999999998          


Q ss_pred             ---cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCC
Q 046173          262 ---SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDY  306 (308)
Q Consensus       262 ---S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~  306 (308)
                         |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|+|++|..
T Consensus        82 ~YtSg~~L~Tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~  124 (134)
T 1tza_A           82 QYTSGTVLDTPFGIMYGTYGMV-----SESGEHFNAIIKPFRLATPGL  124 (134)
T ss_dssp             EEEEEEEESSSEEEEEEEEEEE-----ETTCCEEEEEEEEEEEECTTS
T ss_pred             EEcCCcCcCCCceEEEEEEEEE-----ECCCCEEEEECCCeEccCCCh
Confidence               9999999999999999999     788999999999999999975

>1xq4_A Protein APAG; all beta protein, structural genomics, protein structure initiative, PSI, northeast structural genomics consortium, NESG; 2.70A {Bordetella pertussis} SCOP: b.1.23.1

Probab=100.00  E-value=2.7e-34  Score=243.43  Aligned_cols=98  Identities=30%  Similarity=0.538  Sum_probs=90.5

Q ss_pred             ccccCCcEEEEEeEEccCCCCcc-------e------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------
Q 046173          202 IAVTNGMNTCLRIQFTSLLPEGC-------I------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------  261 (308)
Q Consensus       202 ~~~T~gI~V~v~~~y~s~~p~~~-------~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-------  261 (308)
                      ..+|+||+|+|++.|   +|++|       +      |+|.++.+|||++|||+|+|++|++++|+|+||||+       
T Consensus         7 ~~tT~gI~V~V~~~y---~~e~S~p~~~~y~FaY~ItI~N~~~~~vQL~sRhW~ItD~~G~~~eV~G~GVVGeqPvL~PG   83 (139)
T 1xq4_A            7 PVKPYDLTVSVTPRY---VPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPG   83 (139)
T ss_dssp             CCCSSCEEEEEEEEE---CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTT
T ss_pred             ccccCCEEEEEEEEE---chhhCCCCCCEEEEEEEEEEEeCCCCCEEEEecEEEEEeCCCCEEEEECCCeecCCCcCCCC
Confidence            467899999999999   44443       1      999999999999999999999999999999999998       


Q ss_pred             ------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173          262 ------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI  307 (308)
Q Consensus       262 ------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i  307 (308)
                            |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|+|++|..|
T Consensus        84 e~F~YtSg~~L~Tp~G~M~G~y~m~-----~~~G~~F~v~Ip~F~L~~P~~l  130 (139)
T 1xq4_A           84 ETFEYTSGCPLPTPIGTMRGTYHCV-----GENGIPFEVPIAEFLLAMPRTL  130 (139)
T ss_dssp             CEEEEEEEEEESSSEEEEEEEEEEE-----ETTSCEEEEEEEEEEEECTTC-
T ss_pred             CceEEcCCcCcCCCceEEEEEEEEE-----eCCCCEEEEECCCeEcCCCChh
Confidence                  9999999999999999999     7889999999999999999865

>3d5p_A Putative glucan synthesis regulator of SMI1/KNR4; STR genomics, joint center for structural genomics, JCSG; HET: MSE; 1.45A {Bacteroides fragilis nctc 9343}

Probab=98.73  E-value=4.4e-08  Score=82.26  Aligned_cols=94  Identities=20%  Similarity=0.382  Sum_probs=67.6

Q ss_pred             hcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeeeeccchhHHHHHHHHHH
Q 046173           31 TLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIR  110 (308)
Q Consensus        31 ~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~~LLpL~~i~~~~~~~r  110 (308)
                      .+++|||+++|+++|+.||++||++||++|+.|||.....            |+ .+      ..+++++++++..+.++
T Consensus        10 ~~~~~~s~~~I~~~E~~lgi~lP~~Yk~fl~~~NGg~~~~------------~~-~~------~~l~~~~~i~e~n~~~~   70 (144)
T 3d5p_A           10 YKKDGASSASIDDVEKLLNTTLPKQYKSFLLWSNGGEGKL------------GD-NY------IYIWAIEDVIAYNHDYG   70 (144)
T ss_dssp             EECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHCSSEEEEE------------TT-EE------EEECCHHHHHHHHHHHT
T ss_pred             ccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCCcccC------------CC-ce------eEeeCHHHHHHHHHHhh
Confidence            5789999999999999999999999999999999987531            11 01      34678888888766664


Q ss_pred             HHhCCCCCCceEEEeecCCCcceeEEEeccCCcEEEee
Q 046173          111 RQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGT  148 (308)
Q Consensus       111 ~~~~~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt  148 (308)
                      .....+  ..+++++....   -.+.++.++++||+..
T Consensus        71 ~~~~~p--~~~i~i~~D~g---~~~~~d~~~~~V~~~d  103 (144)
T 3d5p_A           71 IQKYLQ--KEYWAFGMDGD---IGYILHLSDNSIYRVD  103 (144)
T ss_dssp             HHHHSC--TTEEEEEEETT---EEEEEETTTCCEEEEE
T ss_pred             hhhhcC--CCEEEEEEcCC---eEEEECCCCCEEEEEE
Confidence            322222  22677776542   4456676678888754

>2icg_A LIN2918 protein; hypothetical protein, structural genomics, PSI- protein structure initiative, joint center for structural G JCSG; 1.65A {Listeria innocua} SCOP: d.369.1.1

Probab=98.62  E-value=3.3e-07  Score=77.74  Aligned_cols=118  Identities=8%  Similarity=0.087  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccce
Q 046173           12 RHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHL   91 (308)
Q Consensus        12 ~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~   91 (308)
                      ..-++|++.+.++--.  ..+.+|+|+++|+++|+.||++||++||++++.+||-.....     ..+|+-.    .   
T Consensus         5 ~~~~~i~~~i~~~~~~--~~~~~~~s~~~I~~~E~~Lgi~lP~~Yk~fL~~~~gg~~~g~-----~i~~i~~----~---   70 (160)
T 2icg_A            5 SFLEEVDRLITLSGIT--FHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGV-----SFYGISK----R---   70 (160)
T ss_dssp             HHHHHHHHHHHHCCSC--CBCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEETTE-----EECBCCT----T---
T ss_pred             HHHHHHHHHHHHcccc--cccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHhCCcccCce-----eeeeecc----C---
Confidence            5567888888776532  456789999999999999999999999999999998764310     0111110    0   


Q ss_pred             eeeeccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEecc------CCcEEEee
Q 046173           92 VNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCT------NGQLYVGT  148 (308)
Q Consensus        92 ~n~~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~------~G~l~vgt  148 (308)
                       .....+...++..+..+|....++  +.+++++.+.  .+-++.+|.+      ++.||...
T Consensus        71 -~~~~~~~~~i~~~~~~~~~~~~~p--~~~i~i~~~~--~G~~~~ld~~~~~~~~e~~V~~~d  128 (160)
T 2icg_A           71 -GLSAASIPDVKFATEQARTFGDIN--KEMIMIKNSG--YGSIFSIDTSIIGSEGEPVIVETN  128 (160)
T ss_dssp             -GGGCCSTTBHHHHHHHHHHHTSSC--TTEEEEEECS--TTCEEEEEEEEECTTSSEEEEEEC
T ss_pred             -CcccCCCccchhhhHHHHHhcCCC--CCEEEEEecC--CCCEEEEEecccCCCCCCeEEEEE
Confidence             011123356777788888764544  3356665443  2246667654      45566543

>2prv_A Uncharacterized protein YOBK; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE; 1.30A {Bacillus subtilis} SCOP: d.369.1.1

Probab=98.61  E-value=3.6e-07  Score=77.24  Aligned_cols=107  Identities=18%  Similarity=0.271  Sum_probs=70.3

Q ss_pred             HHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeee
Q 046173           15 DRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNV   94 (308)
Q Consensus        15 ~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~   94 (308)
                      +.|++-+.++.-.  ....+|+|+++|+++|+.||++||.+||+|++.|||-...              |...|+.....
T Consensus         5 ~~i~~li~~~~~~--~~~~~~~see~I~~~E~~Lgi~lP~dYk~fLk~~ngg~~~--------------~~~i~~i~~~~   68 (153)
T 2prv_A            5 SKVENFINENKQN--AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLGYNFDH   68 (153)
T ss_dssp             HHHHHHHHHHGGG--CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECCCCSSS
T ss_pred             HHHHHHHHHhhhh--cccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCceec--------------eEEEEeccCCC
Confidence            3445545544211  4667899999999999999999999999999999986642              21222111111


Q ss_pred             eccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEecc-----CCcEEEe
Q 046173           95 YLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCT-----NGQLYVG  147 (308)
Q Consensus        95 ~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~-----~G~l~vg  147 (308)
                           ..++..+..+|....++  +.++++ +.+  ...++.||.+     ++.+|+.
T Consensus        69 -----~~i~~~~~~~~~~~~~p--~~~i~i-~~~--g~~~~~ld~~~~~~~~~pv~~w  116 (153)
T 2prv_A           69 -----ASVVNRTNEYKEHYGLT--DGLVVI-EDV--DYFAYCLDTNKMKDGECPVVEW  116 (153)
T ss_dssp             -----CHHHHHHHHHHHHSCCC--TTEEEE-EEC--SSEEEEEETTSCBTTBCCEEEE
T ss_pred             -----ccHHHHHHHHHHhcCCC--CcEEEE-ecC--CCcEEEEeccccCCCCCCEEEE
Confidence                 46777778888764444  346666 433  4467778875     4677773

>2pag_A Hypothetical protein; nysgx, target 10412I, novel fold, structural genomics, PSI-2 structure initiative; 1.60A {Pseudomonas syringae PV} SCOP: d.369.1.1

Probab=97.93  E-value=3.3e-05  Score=64.45  Aligned_cols=32  Identities=16%  Similarity=0.197  Sum_probs=29.0

Q ss_pred             cCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhh
Q 046173           32 LRKGASEADIQELEKSLKVKLPVPTRILYRFC   63 (308)
Q Consensus        32 L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~h   63 (308)
                      ...++|+++|.++|+.||++||+|||++++-+
T Consensus        18 ~~~~~t~e~I~~~E~~Lgi~fP~dYk~fl~~~   49 (135)
T 2pag_A           18 PLELPDEDQLVEIEEQLFINIPFVFKEFLLTV   49 (135)
T ss_dssp             CCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred             CCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHC
Confidence            45566999999999999999999999999974

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	308
d1xvsa_	124	b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}	2e-10
d1tzaa_	132	b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId:	3e-10
d1xq4a_	123	b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 5	4e-10
d2prva1	152	d.369.1.1 (A:1-152) Uncharacterized protein YobK {	2e-09
d2icga1	158	d.369.1.1 (A:1-158) Uncharacterized protein Lin291	7e-04

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

 Score = 55.2 bits (133), Expect = 2e-10
 Identities = 22/92 (23%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGS 272
           I  ++  +  L  R W+I   +   + V G+ V+G              S T L    G 
Sbjct: 36  IKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKANDEYTYSSGTALDTPVGV 95

Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQP 304
           ++G  + +     D +G  F VE+  F L  P
Sbjct: 96  MQGQYLMI-----DEQGESFTVEIEPFRLAVP 122

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]} Length = 132

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

 Score = 54.8 bits (132), Expect = 3e-10
 Identities = 22/85 (25%), Positives = 30/85 (35%), Gaps = 18/85 (21%)

Query: 233 SCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGSVRGSLMF 279
           +  L+ RHW+I   N   S+V G  V+G              S T L    G + G+   
Sbjct: 41  AAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQYTSGTVLDTPFGIMYGTYGM 100

Query: 280 VPARLADPKGSPFEVEVAEFPLQQP 304
           V        G  F   +  F L  P
Sbjct: 101 V-----SESGEHFNAIIKPFRLATP 120

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]} Length = 123

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

 Score = 54.8 bits (132), Expect = 4e-10
 Identities = 27/92 (29%), Positives = 36/92 (39%), Gaps = 18/92 (19%)

Query: 226 INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------------SCTPLPGSSGS 272
           I         +  RHW+I      + +V G  V+G              S  PLP   G+
Sbjct: 35  ITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGETFEYTSGCPLPTPIGT 94

Query: 273 VRGSLMFVPARLADPKGSPFEVEVAEFPLQQP 304
           +RG+   V        G PFEV +AEF L  P
Sbjct: 95  MRGTYHCV-----GENGIPFEVPIAEFLLAMP 121

>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]} Length = 152

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein YobK
species: Bacillus subtilis [TaxId: 1423]

 Score = 53.1 bits (127), Expect = 2e-09
 Identities = 16/104 (15%), Positives = 34/104 (32%), Gaps = 21/104 (20%)

Query: 14  WDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDF 73
           + + + ++ EN   A     +GAS  +I  +E++L+  LP   +                
Sbjct: 3   YSKVENFINENKQNA--IFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGA-------- 52

Query: 74  ESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLHFPG 117
                 G + G    G+         + ++  T E +       
Sbjct: 53  ------GGLFGVLVLGY-----NFDHASVVNRTNEYKEHYGLTD 85

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]} Length = 158

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

 Score = 37.4 bits (86), Expect = 7e-04
 Identities = 10/100 (10%), Positives = 26/100 (26%), Gaps = 15/100 (15%)

Query: 28  AKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSF 87
                    +   I+  + +L  + P   ++              F  I   GL      
Sbjct: 18  ITFHASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVSFYGISKRGL------ 71

Query: 88  YGHLVNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASS 127
                      +  +   T++ R         + +++ +S
Sbjct: 72  -------SAASIPDVKFATEQARTFGDIN--KEMIMIKNS 102

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	308
d1tzaa_	132	ApaG {Shewanella oneidensis [TaxId: 70863]}	100.0
d1xvsa_	124	ApaG {Vibrio cholerae [TaxId: 666]}	99.98
d1xq4a_	123	ApaG {Bordetella pertussis [TaxId: 520]}	99.97
d2prva1	152	Uncharacterized protein YobK {Bacillus subtilis [T	99.37
d2icga1	158	Uncharacterized protein Lin2918 {Listeria innocua	98.86
d2paga1	135	Hypothetical protein PSPTO5518 {Pseudomonas syring	97.71

>d1tzaa_ b.1.23.1 (A:) ApaG {Shewanella oneidensis [TaxId: 70863]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Shewanella oneidensis [TaxId: 70863]

Probab=100.00  E-value=4.5e-34  Score=238.22  Aligned_cols=100  Identities=26%  Similarity=0.424  Sum_probs=91.0

Q ss_pred             cccCCcEEEEEeEE---ccCCCCc-ce------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-----------
Q 046173          203 AVTNGMNTCLRIQF---TSLLPEG-CI------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-----------  261 (308)
Q Consensus       203 ~~T~gI~V~v~~~y---~s~~p~~-~~------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-----------  261 (308)
                      |+|+||+|+|++.|   +|...+. ++      |+|.++.+|||++|||+|+|++|++++|+|+||||+           
T Consensus         1 a~t~gI~V~V~t~y~~e~S~p~~~~y~F~Y~ItI~N~~~~~vQLlsR~W~I~d~~G~~~eV~G~GVVG~qPvl~PGe~f~   80 (132)
T d1tzaa_           1 ALDNSIRVEVKTEYIEQQSSPEDEKYLFSYTITIINLGEQAAKLETRHWIITDANGKTSEVQGAGVVGETPTIPPNTAYQ   80 (132)
T ss_dssp             CGGGTEEEEEEEEEEEECCBTTBCCEEEEEEEEEEECSSSCEEEEEEEEEEEETTSCEEEEEEESBTTBCCEECTTEEEE
T ss_pred             CccCCEEEEEEEEEchhcCCCCCCeEEEEEEEEEEeCCCCCEEEEeeEEEEECCCCCEEEEeCCCccCCcCccCCCCCEE
Confidence            68999999999999   4432222 21      999999999999999999999999999999999998           


Q ss_pred             --cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCCC
Q 046173          262 --SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDYI  307 (308)
Q Consensus       262 --S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~i  307 (308)
                        |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|.|.+|..|
T Consensus        81 Y~S~~~l~t~~G~M~G~y~m~-----~~~g~~F~v~Ip~F~L~~P~~l  123 (132)
T d1tzaa_          81 YTSGTVLDTPFGIMYGTYGMV-----SESGEHFNAIIKPFRLATPGLL  123 (132)
T ss_dssp             EEEEEEESSSEEEEEEEEEEE-----ETTCCEEEEEEEEEEEECTTSS
T ss_pred             EeCCCCccCCceEEEEEEEEE-----ECCCCEEEEECCCEECCCCchh
Confidence              9999999999999999999     6799999999999999999875

>d1xvsa_ b.1.23.1 (A:) ApaG {Vibrio cholerae [TaxId: 666]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Vibrio cholerae [TaxId: 666]

Probab=99.98  E-value=5.1e-33  Score=229.70  Aligned_cols=96  Identities=24%  Similarity=0.442  Sum_probs=89.5

Q ss_pred             ccccCCcEEEEEeEEccCCCCcce-------------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee-------
Q 046173          202 IAVTNGMNTCLRIQFTSLLPEGCI-------------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM-------  261 (308)
Q Consensus       202 ~~~T~gI~V~v~~~y~s~~p~~~~-------------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~-------  261 (308)
                      +++|.||+|+|++.|   +|++|.             |+|.++.+|||++|||+|+|++|++++|+|+||||+       
T Consensus         2 d~~~~~I~V~V~~~y---~~e~S~p~~~~y~f~Y~I~I~N~~~~~vQLlsR~W~I~d~~g~~~~V~G~GVVG~qPvl~PG   78 (124)
T d1xvsa_           2 DVSLPCIKIQVQTRY---IEEQSNPEYQRFVFAYLITIKNLSSQTVQLMSRRWLITDADGKQTVVEGDGVVGEQPRIKAN   78 (124)
T ss_dssp             BCSCCCEEEEEEEEE---CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEEETTCCEEEEEEESBTTBCCEECTT
T ss_pred             CcccCCEEEEEEEEE---chhhCCCCCCEEEEEEEEEEEeCCCCCEEEEeeEEEEEeCCCCEEEeccCcccCCCCCcCCC
Confidence            467899999999999   444331             999999999999999999999999999999999998       


Q ss_pred             ------cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCC
Q 046173          262 ------SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPD  305 (308)
Q Consensus       262 ------S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~  305 (308)
                            |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|.|.+|+
T Consensus        79 e~f~Y~S~~~l~tp~G~M~G~y~m~-----~~~g~~F~v~Ip~F~L~~P~  123 (124)
T d1xvsa_          79 DEYTYSSGTALDTPVGVMQGQYLMI-----DEQGESFTVEIEPFRLAVPH  123 (124)
T ss_dssp             CEEEEEEEEEESSSEEEEEEEEEEE-----CTTSCEEEEEEEEEEEECCC
T ss_pred             CCEEEeCCCCccCCCeEEEEEEEEE-----cCCCCEEEEECCCEEccCCC
Confidence                  9999999999999999999     78999999999999999996

>d1xq4a_ b.1.23.1 (A:) ApaG {Bordetella pertussis [TaxId: 520]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: ApaG-like
family: ApaG-like
domain: ApaG
species: Bordetella pertussis [TaxId: 520]

Probab=99.97  E-value=2.9e-32  Score=224.87  Aligned_cols=95  Identities=31%  Similarity=0.530  Sum_probs=87.9

Q ss_pred             ccCCcEEEEEeEEccCCCCcce-------------ecCCCCCcEEEecceEEEEeCCCceEEEEcCeeeee---------
Q 046173          204 VTNGMNTCLRIQFTSLLPEGCI-------------INGMTFSSCLLQHRHWVIHAYNVVLSDVSGEAVIGM---------  261 (308)
Q Consensus       204 ~T~gI~V~v~~~y~s~~p~~~~-------------i~n~~~~~vqL~sRhW~I~d~~g~~~eV~G~GVVG~---------  261 (308)
                      .++.|+|+|++.|   +|++|.             |+|.++.+|||++|||+|+|++|++++|+|+||||+         
T Consensus         3 ~~~~I~V~V~~~y---~~e~S~~~~~~y~F~Y~I~I~N~~~~~vQL~sR~W~I~d~~g~~~eV~G~GVVG~qPvl~PGe~   79 (123)
T d1xq4a_           3 KPYDLTVSVTPRY---VPEQSDPSQQQYVFAYTVRITNTGSHPAQVISRHWIITDGEERVQEVRGLGVVGQQPLLAPGET   79 (123)
T ss_dssp             CSSCEEEEEEEEE---CGGGCBGGGTBEEEEEEEEEEECSSSCEEEEEEEEEEECTTSCEEEEEEESSSSCCCEECTTCE
T ss_pred             CCCcEEEEEEEEE---chhcCCCCCCeEEEEEEEEEEECCCCcEEEEeeeEEEEeCCCCEEEccCCCEeCCcccCCCCCC
Confidence            3679999999999   444431             999999999999999999999999999999999998         


Q ss_pred             ----cCccccCCeeEEEEEEEEEecccCCCCCCcEEEEecCccCCCCCC
Q 046173          262 ----SCTPLPGSSGSVRGSLMFVPARLADPKGSPFEVEVAEFPLQQPDY  306 (308)
Q Consensus       262 ----S~~~l~t~~G~M~G~y~~~p~~l~~~~g~~F~v~Ip~F~L~~P~~  306 (308)
                          |||+|+||.|+|+|+|+|+     +++|+.|+|.||+|.|++|+.
T Consensus        80 f~Y~S~~~l~tp~G~M~G~y~m~-----~~~g~~f~v~Ip~F~L~~P~t  123 (123)
T d1xq4a_          80 FEYTSGCPLPTPIGTMRGTYHCV-----GENGIPFEVPIAEFLLAMPRT  123 (123)
T ss_dssp             EEEEEEEEESSSEEEEEEEEEEE-----ETTSCEEEEEEEEEEEECTTC
T ss_pred             EEEeCCCCcCCCCeEEEEEEEEE-----ECCCCEEEEECCCeEcCCCCC
Confidence                9999999999999999999     689999999999999999963

>d2prva1 d.369.1.1 (A:1-152) Uncharacterized protein YobK {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein YobK
species: Bacillus subtilis [TaxId: 1423]

Probab=99.37  E-value=2.5e-12  Score=106.53  Aligned_cols=105  Identities=19%  Similarity=0.324  Sum_probs=77.5

Q ss_pred             HHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceeccccee
Q 046173           13 HWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLV   92 (308)
Q Consensus        13 ~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~   92 (308)
                      +|+|||+|+.+|.|.  ..|++|||+++|+++|+.||++||++||.||+.|||....              |..+|.   
T Consensus         2 ~~~~i~~~i~~~~~~--~~~~~gas~e~I~~~E~~Lg~~LP~~Yk~fL~~~ng~~~~--------------~~~~~~---   62 (152)
T d2prva1           2 IYSKVENFINENKQN--AIFTEGASHENIGRIEENLQCDLPNSYKWFLEKYGAGGLF--------------GVLVLG---   62 (152)
T ss_dssp             HHHHHHHHHHHHGGG--CEECCCCCHHHHHHHHHHHTSCCCHHHHHHHHHHCSEEET--------------TEEECC---
T ss_pred             hHHHHHHHHHHcccc--cccCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHcCCcccc--------------CceEee---
Confidence            799999999999997  5599999999999999999999999999999999987643              222221   


Q ss_pred             eeeccchhHHHHHHHHHHHHhCCCCCCceEEEeecCCCcceeEEEeccCCc
Q 046173           93 NVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSSTYSEKFFFLNCTNGQ  143 (308)
Q Consensus        93 n~~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass~~~~k~~~l~~~~G~  143 (308)
                        ...+...++..+..+++...++  +.+++++..   .+-+++++.+++.
T Consensus        63 --~~~~~~~~i~~~~~~~~~~~~p--~~~i~~~~~---gg~~~~~d~~~~~  106 (152)
T d2prva1          63 --YNFDHASVVNRTNEYKEHYGLT--DGLVVIEDV---DYFAYCLDTNKMK  106 (152)
T ss_dssp             --CCSSSCHHHHHHHHHHHHSCCC--TTEEEEEEC---SSEEEEEETTSCB
T ss_pred             --ccccchHHHHhhHHHHHhccCC--CceEEEEcC---CCCEEEEEeccCC
Confidence              1234456777777888877665  235555432   3455666655443

>d2icga1 d.369.1.1 (A:1-158) Uncharacterized protein Lin2918 {Listeria innocua [TaxId: 1642]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Uncharacterized protein Lin2918
species: Listeria innocua [TaxId: 1642]

Probab=98.86  E-value=6.5e-09  Score=86.09  Aligned_cols=100  Identities=8%  Similarity=0.087  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHhChhhHhhcCCCCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccce
Q 046173           12 RHWDRFKKWLTENFPEAKATLRKGASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHL   91 (308)
Q Consensus        12 ~~W~rIe~wL~~~~P~~~~~L~~gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~   91 (308)
                      .+-++|++.+.++....  ..++|||+++|+++|+.||++||++||.||+.|||+.....+     .+|+...       
T Consensus         4 ~~~e~~~~~~~~~~~~~--~~~~~at~E~I~~~E~~LG~~lP~~Yr~fL~~~ng~~~~~~~-----i~~i~~~-------   69 (158)
T d2icga1           4 SFLEEVDRLITLSGITF--HASGTGTPELIKIYQDALGNEFPETYKLFLEKYGTLTFNGVS-----FYGISKR-------   69 (158)
T ss_dssp             HHHHHHHHHHHHCCSCC--BCCCCCCHHHHHHHHHHHTCCCCHHHHHHHHHTSSEEETTEE-----ECBCCTT-------
T ss_pred             HHHHHHHHHHHhcCCcc--ccCCCCCHHHHHHHHHHHCCCCCHHHHHHHHHcCCcccCCce-----eeccccc-------
Confidence            45688999999998775  578999999999999999999999999999999998754211     1111110       


Q ss_pred             eeeeccchhHHHHHHHHHHHHhCCCCCCceEEEeecC
Q 046173           92 VNVYLIPLSHIIMETKEIRRQLHFPGRDKYVVLASSS  128 (308)
Q Consensus        92 ~n~~LLpL~~i~~~~~~~r~~~~~~~~~~~~~~aass  128 (308)
                       .........++..++.+++....+  +.+++++...
T Consensus        70 -~~~~~~~~~~~~~~~~~~~~~~~~--~~~i~i~~~~  103 (158)
T d2icga1          70 -GLSAASIPDVKFATEQARTFGDIN--KEMIMIKNSG  103 (158)
T ss_dssp             -GGGCCSTTBHHHHHHHHHHHTSSC--TTEEEEEECS
T ss_pred             -cccccccchHHHHHHHHHhccCCC--cCEEEEEEcC
Confidence             123344566777788888865544  2356665544

>d2paga1 d.369.1.1 (A:1-135) Hypothetical protein PSPTO5518 {Pseudomonas syringae pv. tomato [TaxId: 323]}

class: Alpha and beta proteins (a+b)
fold: SMI1/KNR4-like
superfamily: SMI1/KNR4-like
family: SMI1/KNR4-like
domain: Hypothetical protein PSPTO5518
species: Pseudomonas syringae pv. tomato [TaxId: 323]

Probab=97.71  E-value=0.00017  Score=58.33  Aligned_cols=90  Identities=11%  Similarity=0.156  Sum_probs=56.2

Q ss_pred             CCCHHHHHHHHHHcCCCCCHHHHHhhhhhCCcccccCCcccccccccccceecccceeeeeccchhHHHHHHHHHHHHhC
Q 046173           35 GASEADIQELEKSLKVKLPVPTRILYRFCDGQECQTDDFESIGSMGLIGGYSFYGHLVNVYLIPLSHIIMETKEIRRQLH  114 (308)
Q Consensus        35 gate~~I~~~E~~Lg~~LP~d~r~lyr~hnGQ~~~~~~~~~~~~~GLigG~~~y~~~~n~~LLpL~~i~~~~~~~r~~~~  114 (308)
                      ++|+++|+++|+.||++||.+||++++..+|-...        ...+.+.         ....+-..+.+.+..+|. .+
T Consensus        21 ~pt~e~I~~~E~~lg~~~P~~yk~fl~~~g~~~~g--------~~e~~~~---------~d~~s~~~l~e~~~~~~~-~g   82 (135)
T d2paga1          21 LPDEDQLVEIEEQLFINIPFVFKEFLLTVSDVVYG--------SLEPVTV---------TDPQSHTYLPEVCATAWD-LG   82 (135)
T ss_dssp             CCCHHHHHHHHHHHTCCCCHHHHHHHHHHTTCCBT--------TBCBCBS---------SCTTSTTBHHHHHHHHHH-HT
T ss_pred             CCCHHHHHHHHHHHCCCCCHHHHHHHHHhCCeeec--------eEEEeec---------CCCCccccHHHHHHHHHh-hC
Confidence            45999999999999999999999999997655432        1111111         111233455566666655 45


Q ss_pred             CCCCCceEEEeecCCCcceeEEEeccCCcEEEee
Q 046173          115 FPGRDKYVVLASSSTYSEKFFFLNCTNGQLYVGT  148 (308)
Q Consensus       115 ~~~~~~~~~~aass~~~~k~~~l~~~~G~l~vgt  148 (308)
                      ++  +.+++++-.   ++-++.|+. +|+|+...
T Consensus        83 lp--~~~I~i~~~---~g~~ycld~-~g~V~~w~  110 (135)
T d2paga1          83 VP--RELIPICQD---GEDYYCVEE-DGTVLLWS  110 (135)
T ss_dssp             CC--TTSEEEEEE---TTEEEEECT-TSCEEEEC
T ss_pred             CC--CceEEEEEC---CCceEEEec-CCCEEEEe
Confidence            54  236777643   234455554 67877654