Citrus Sinensis ID: 046178

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-----
MEDLIISPSSSSSLVSLTPETPPPTLQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITKPLNPNPTPAAPPMHFLDRNISFADIGIIAGVQQEQEEEEEEEEELSRPEEEDQNKVKKPRKDQGCTVKSSTGQSSYTVDSEHSDSDCPLPPPVNNISAVEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRLDQ
ccccccccccccccccccccccccHHHHHHHHHHcccccccEEEEEcEEccccccccEEEEEccEEEccccccccccccccccccccccccHHHHHHHHHHHHHHHHccccccccccccccccccccccEEEEccEEEEEccccccccEEEEcccEEEEEcccccccccHHHHHHHHHccccEEEEEEccccEEEEcccHHHHcccHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccccccEEEEEEEccEEEEEEEccccccHHHHHHHHHHccccEEEEEEEEEEccEEEEEEEEEcccccccHHHHHHHHHHHHcc
ccEEEEEccccccHHHcccccccHHHHHHHHHHHHccccccEEEEEEEEccccccccEEEEEcccccccccccccEEEcccccccccHHccHHHHHHHHHHHHHHHHHHHcccccccHcccHHHccccEEEEHEHEHEEcccccccccHHHccccEEEEEccccccccHHHHHHHHHHcccEEEEEEEccccEEEEcccccccccHHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHcccccHHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccccccEEEEEEEcccEEEEEEccccccHHHHHHHHHHHcccEEEEEEEEEcccEEEEEEEEEcccccccHHHHHHHHHHHHcc
medliispssssslvsltpetppptlqQRLQFIVQSQPEWWAYAIFWQTisnddngqlflawgdghyqgtkdasprarmsmpapapgaaldnnmERKRAISSIRGIQQSfmghemdlsmmdggdvtdtEWFYVMSLTRsfgagvgipgraqssgslvwltgshelqfyNCERAKEaqshgietfvciptscgvlelgssdlirenWGLVHQVKSLfgsdlitkplnpnptpaappmhfldrnisfadIGIIAgvqqeqeeeeeeeeelsrpeeedqnkvkkprkdqgctvksstgqssytvdsehsdsdcplpppvnnisavekrtpkkrgrkpglgretplnhVEAERQRREKLNHRFYALRAvvpnvsrmdkaSLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEisdnhstttsvdqarpssagsgggfnlEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVrvpdglrtEDALRSALLRRLDQ
medliispssssslvsltpeTPPPTLQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITKPLNPNPTPAAPPMHFLDRNISFADIGIIAGVQQEQEEEeeeeeelsrpeeedqnkvkkprkdqgctvksstgqssytvdsehsdsdcplpppvnnisavekrtpkkrgrkpglgretplnhveaERQRREKLNHRFYALravvpnvsrmdkaSLLSDAVSYIRELKVKIDDLESQLLQReskkvkleisdnhstttsvdqarpssagsgggFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSallrrldq
MEDLIIspssssslvsltpetppptlQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDasprarmsmpapapgaaLDNNMERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITKplnpnptpaappMHFLDRNISFADIGIIAGVqqeqeeeeeeeeelsrpeeedqNKVKKPRKDQGCTVKSSTGQSSYTVDSEHSDSDCPLPPPVNNISAVEkrtpkkrgrkpglgrETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDalrsallrrlDQ
****************************RLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHY***************************************************MMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITK************MHFLDRNISFADIGIIAGV*****************************************************************************************************NHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDL************************************************************************LRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLR***************
******************************QFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTK**************************************************GGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITKPLNPNPTPAAPPMHFLDRNISFADIGIIAGVQQEQEEEEEEEEE******************************SYTVDSEHSDSDCP*******************************************LNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKV***************************************************KIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGL*TEDALRSALLRRLD*
***********************PTLQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITKPLNPNPTPAAPPMHFLDRNISFADIGIIAGV********************************************************PLPPPVNNISAVEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISD******************GGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRLDQ
*ED**ISPSSSSS*******TPPPTLQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMS*********L***MERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDL*************************************************************************************************************************LN****ERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQR********************************FNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRLD*
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MEDLIISPSSSSSLVSLTPETPPPTLQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDLITKPLNPNPTPAAPPMHFLDRNISFADIGIIAGxxxxxxxxxxxxxxxxxxxxxDQNKVKKPRKDQGCTVKSSTGQSSYTVDSEHSDSDCPLPPPVNNISAVEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLxxxxxxxxxxxxxxxxxxxxxxxxxxxxKVKLEISDNHSTTTSVDQARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRLDQ
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query515 2.2.26 [Sep-21-2011]
O49687589 Transcription factor MYC4 yes no 0.968 0.847 0.366 2e-87
O23090423 Transcription factor bHLH no no 0.770 0.938 0.376 8e-68
Q9LUK7511 Transcription factor bHLH no no 0.867 0.874 0.361 2e-60
Q9ZPY8566 Transcription factor ABA- no no 0.862 0.784 0.332 2e-56
Q39204623 Transcription factor MYC2 no no 0.398 0.329 0.546 1e-54
O23487467 Transcription factor bHLH no no 0.836 0.922 0.300 2e-50
Q9FIP9592 Transcription factor ATR2 no no 0.454 0.395 0.439 3e-47
Q9LNJ5590 Transcription factor bHLH no no 0.310 0.271 0.383 6e-27
Q9FT81518 Transcription factor TT8 no no 0.365 0.362 0.334 3e-22
Q9CAD0596 Transcription factor EGL1 no no 0.359 0.310 0.300 6e-18
>sp|O49687|BH004_ARATH Transcription factor MYC4 OS=Arabidopsis thaliana GN=BHLH4 PE=2 SV=1 Back     alignment and function desciption
 Score =  323 bits (827), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 208/567 (36%), Positives = 300/567 (52%), Gaps = 68/567 (11%)

Query: 1   MEDLIISPSSSSSLVSLTP-----ETPPPTLQQRLQFIVQSQPEWWAYAIFWQTI----- 50
           ME  I   S  SSL    P     +     LQQRLQ +++   E W YA+FWQ+      
Sbjct: 33  MEAFIGGGSDHSSLFPPLPPPPLPQVNEDNLQQRLQALIEGANENWTYAVFWQSSHGFAG 92

Query: 51  -SNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRGIQQS 109
             N++N  + L WGDG+Y+G ++ S R + S PA A          RKR I  +  +  S
Sbjct: 93  EDNNNNNTVLLGWGDGYYKGEEEKS-RKKKSNPASAA-----EQEHRKRVIRELNSLI-S 145

Query: 110 FMGHEMDLSMMDGGD--VTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQF 167
                 D    + GD  VTDTEWF+++S+T+SF  G G+PG+A S+   +WL+GS+ L  
Sbjct: 146 GGVGGGD----EAGDEEVTDTEWFFLVSMTQSFVKGTGLPGQAFSNSDTIWLSGSNALAG 201

Query: 168 YNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLF-----GSDLIT 222
            +CERA++ Q +G++T VC+ T  GV+ELGSS++I ++  LV +V + F     G +  +
Sbjct: 202 SSCERARQGQIYGLQTMVCVATENGVVELGSSEIIHQSSDLVDKVDTFFNFNNGGGEFGS 261

Query: 223 KPLNPNPTPAAPPMHFLDRNISFADIGIIAGVQQEQEEEEEEEEELSRP----------- 271
              N NP              +  D G++A         +      S+P           
Sbjct: 262 WAFNLNPDQGENDPGLWISEPNGVDSGLVAAPVMNNGGNDSTSNSDSQPISKLCNGSSVE 321

Query: 272 -----------------------EEEDQNKVKKPRKDQGCTVKSSTGQSSYTVDSEHSDS 308
                                  EE+  NK + P  +    + S T  S    DS HSD 
Sbjct: 322 NPNPKVLKSCEMVNFKNGIENGQEEDSSNKKRSPVSNNEEGMLSFT--SVLPCDSNHSDL 379

Query: 309 DCPLPPPV--NNISAVEKRTPKKRGRKPGLGRETPLNHVEAERQRREKLNHRFYALRAVV 366
           +  +      N +    ++ P+KRGRKP  GRE PLNHVEAERQRREKLN RFY+LRAVV
Sbjct: 380 EASVAKEAESNRVVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYSLRAVV 439

Query: 367 PNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLEISDNHSTTTSVDQARP 426
           PNVS+MDKASLL DA+SYI ELK K+   ES   + + K++ +   +  +  +SV   + 
Sbjct: 440 PNVSKMDKASLLGDAISYISELKSKLQKAESDKEELQ-KQIDVMNKEAGNAKSSVKDRKC 498

Query: 427 SSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLMSSLRDLDLQLHHASMSCVNDL 486
            +  S     +EV+ KI+G DAMIR+Q    NHP AK M +L++LDL+++HAS+S VNDL
Sbjct: 499 LNQESSVLIEMEVDVKIIGWDAMIRIQCSKRNHPGAKFMEALKELDLEVNHASLSVVNDL 558

Query: 487 MLQDIVVRVPDGLRTEDALRSALLRRL 513
           M+Q   V++ +   T+D L+ AL  ++
Sbjct: 559 MIQQATVKMGNQFFTQDQLKVALTEKV 585

Arabidopsis thaliana (taxid: 3702)
>sp|O23090|BH014_ARATH Transcription factor bHLH14 OS=Arabidopsis thaliana GN=BHLH14 PE=2 SV=1 Back     alignment and function description
>sp|Q9LUK7|BH028_ARATH Transcription factor bHLH28 OS=Arabidopsis thaliana GN=BHLH28 PE=2 SV=1 Back     alignment and function description
>sp|Q9ZPY8|AIB_ARATH Transcription factor ABA-INDUCIBLE bHLH-TYPE OS=Arabidopsis thaliana GN=AIB PE=2 SV=2 Back     alignment and function description
>sp|Q39204|RAP1_ARATH Transcription factor MYC2 OS=Arabidopsis thaliana GN=RAP1 PE=1 SV=2 Back     alignment and function description
>sp|O23487|BH003_ARATH Transcription factor bHLH3 OS=Arabidopsis thaliana GN=BHLH3 PE=2 SV=1 Back     alignment and function description
>sp|Q9FIP9|ATR2_ARATH Transcription factor ATR2 OS=Arabidopsis thaliana GN=ATR2 PE=1 SV=1 Back     alignment and function description
>sp|Q9LNJ5|BH013_ARATH Transcription factor bHLH13 OS=Arabidopsis thaliana GN=BHLH13 PE=2 SV=1 Back     alignment and function description
>sp|Q9FT81|TT8_ARATH Transcription factor TT8 OS=Arabidopsis thaliana GN=TT8 PE=1 SV=2 Back     alignment and function description
>sp|Q9CAD0|EGL1_ARATH Transcription factor EGL1 OS=Arabidopsis thaliana GN=BHLH2 PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
224064350491 predicted protein [Populus trichocarpa] 0.924 0.969 0.652 1e-178
118486275491 unknown [Populus trichocarpa] 0.883 0.926 0.648 1e-176
225453582497 PREDICTED: transcription factor MYC2-lik 0.926 0.959 0.596 1e-165
255578194486 DNA binding protein, putative [Ricinus c 0.924 0.979 0.611 1e-165
224128025430 predicted protein [Populus trichocarpa] 0.768 0.920 0.565 1e-144
356520239464 PREDICTED: transcription factor MYC2-lik 0.833 0.924 0.533 1e-130
356559821466 PREDICTED: transcription factor MYC2-lik 0.827 0.914 0.499 1e-125
225426580468 PREDICTED: transcription factor MYC4 [Vi 0.891 0.980 0.497 1e-119
193734712476 MYC2 [Hevea brasiliensis] 0.867 0.939 0.475 1e-117
255555757479 DNA binding protein, putative [Ricinus c 0.918 0.987 0.455 1e-116
>gi|224064350|ref|XP_002301432.1| predicted protein [Populus trichocarpa] gi|222843158|gb|EEE80705.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  630 bits (1625), Expect = e-178,   Method: Compositional matrix adjust.
 Identities = 345/529 (65%), Positives = 409/529 (77%), Gaps = 53/529 (10%)

Query: 1   MEDLIISPSSSSSLVSLTPETPPPTLQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFL 60
           ME+LIISPSS SS VSL+ ETPP TLQQRLQFIVQ+QP+WW+YAIFWQT SNDD+G++FL
Sbjct: 1   MEELIISPSSPSSPVSLSQETPP-TLQQRLQFIVQNQPDWWSYAIFWQT-SNDDSGRIFL 58

Query: 61  AWGDGHYQGTKDASPR------ARMSMPAPAPGAALDNNMERKRAISSIRGIQQSFMG-- 112
            WGDGH+QG+KD SP+      +RM++          +N ERKR +  ++GIQ S +G  
Sbjct: 59  GWGDGHFQGSKDTSPKPNTFSNSRMTI----------SNSERKRVM--MKGIQ-SLIGEC 105

Query: 113 HEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCER 172
           H++D+S+MDG D TD+EWFYVMSLTRSF  G GI G+A ++GSL+WLTG HELQFYNCER
Sbjct: 106 HDLDMSLMDGNDATDSEWFYVMSLTRSFSPGDGILGKAYTTGSLIWLTGGHELQFYNCER 165

Query: 173 AKEAQSHGIETFVCIPTSCGVLELGSSDLIRENWGLVHQVKSLFGSDL--ITKPLNPNPT 230
            KEAQ HGIET VCIPTSCGVLELGSS +IRENWGLV Q KSLFGSDL     P  PN +
Sbjct: 166 VKEAQMHGIETLVCIPTSCGVLELGSSSVIRENWGLVQQAKSLFGSDLSAYLVPKGPNNS 225

Query: 231 PAAPPMHFLDRNISFADIGIIAGVQQEQEEEEEEEEELSRPEEEDQNKVKKPRKDQGCTV 290
            +  P  FLDR+ISFAD+GIIAG+ QE    + E++     EE ++    KP        
Sbjct: 226 -SEEPTQFLDRSISFADMGIIAGL-QEDCAVDREQKNARETEEANKRNANKP-------- 275

Query: 291 KSSTGQSSYTVDSEHSDSDCPLPPPVNNISAVEKRTPKKRGRKPGLGRETPLNHVEAERQ 350
                  SY ++SEHSDSD PL         +EKR PKKRGRKPGLGR+ PLNHVEAERQ
Sbjct: 276 -----GLSY-LNSEHSDSDFPLLA-----MHMEKRIPKKRGRKPGLGRDAPLNHVEAERQ 324

Query: 351 RREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRESKKVKLE 410
           RREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYI ELK K+D+LESQ L+RESKKVKLE
Sbjct: 325 RREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYINELKAKVDELESQ-LERESKKVKLE 383

Query: 411 IS---DNHSTTTSVDQA--RPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNHPAAKLM 465
           ++   DN STTTSVDQ+  RP+SAG G G  LEVE K +G+DAMIRVQSENVN+PA++LM
Sbjct: 384 VADNLDNQSTTTSVDQSACRPNSAG-GAGLALEVEIKFVGNDAMIRVQSENVNYPASRLM 442

Query: 466 SSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTEDALRSALLRRLD 514
            +LR+L+ Q+HHASMSCVN+LMLQD+VVRVPDGLRTE+AL+SALL RL+
Sbjct: 443 CALRELEFQVHHASMSCVNELMLQDVVVRVPDGLRTEEALKSALLGRLE 491

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|118486275|gb|ABK94979.1| unknown [Populus trichocarpa] Back     alignment and taxonomy information
>gi|225453582|ref|XP_002266775.1| PREDICTED: transcription factor MYC2-like [Vitis vinifera] Back     alignment and taxonomy information
>gi|255578194|ref|XP_002529965.1| DNA binding protein, putative [Ricinus communis] gi|223530527|gb|EEF32408.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|224128025|ref|XP_002320222.1| predicted protein [Populus trichocarpa] gi|222860995|gb|EEE98537.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|356520239|ref|XP_003528771.1| PREDICTED: transcription factor MYC2-like [Glycine max] Back     alignment and taxonomy information
>gi|356559821|ref|XP_003548195.1| PREDICTED: transcription factor MYC2-like [Glycine max] Back     alignment and taxonomy information
>gi|225426580|ref|XP_002279973.1| PREDICTED: transcription factor MYC4 [Vitis vinifera] Back     alignment and taxonomy information
>gi|193734712|gb|ACF19982.1| MYC2 [Hevea brasiliensis] Back     alignment and taxonomy information
>gi|255555757|ref|XP_002518914.1| DNA binding protein, putative [Ricinus communis] gi|223541901|gb|EEF43447.1| DNA binding protein, putative [Ricinus communis] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query515
TAIR|locus:2134583423 AT4G00870 "AT4G00870" [Arabido 0.314 0.382 0.567 1.5e-79
TAIR|locus:2035609623 MYC2 "AT1G32640" [Arabidopsis 0.316 0.261 0.562 1.8e-76
TAIR|locus:2141055589 MYC4 "AT4G17880" [Arabidopsis 0.434 0.380 0.432 1.1e-72
TAIR|locus:2178555592 MYC3 "AT5G46760" [Arabidopsis 0.415 0.361 0.420 8.2e-71
UNIPROTKB|Q336P5699 Os10g0575000 "Os10g0575000 pro 0.304 0.224 0.529 5e-69
TAIR|locus:2172932511 NIG1 "AT5G46830" [Arabidopsis 0.299 0.301 0.509 2.3e-64
TAIR|locus:2039094566 AIB "AT2G46510" [Arabidopsis t 0.233 0.212 0.460 4.7e-38
TAIR|locus:2035237590 AT1G01260 "AT1G01260" [Arabido 0.339 0.296 0.35 3e-36
TAIR|locus:2130619467 AT4G16430 "AT4G16430" [Arabido 0.233 0.256 0.421 4.5e-33
TAIR|locus:2118524518 TT8 "AT4G09820" [Arabidopsis t 0.351 0.349 0.305 7.7e-30
TAIR|locus:2134583 AT4G00870 "AT4G00870" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 463 (168.0 bits), Expect = 1.5e-79, Sum P(3) = 1.5e-79
 Identities = 93/164 (56%), Positives = 130/164 (79%)

Query:   342 LNHVEAERQRREKLNHRFYALRAVVPNVSRMDKASLLSDAVSYIRELKVKIDDLESQLLQ 401
             L+HVEAE+QRREKLNHRFYALRA+VP VSRMDKASLLSDAVSYI  LK KIDDLE+++ +
Sbjct:   248 LSHVEAEKQRREKLNHRFYALRAIVPKVSRMDKASLLSDAVSYIESLKSKIDDLETEIKK 307

Query:   402 RESKKV-KLEISDNHSTTTSVD-QARPSSAGSGGGFNLEVETKIMGSDAMIRVQSENVNH 459
              +  +  KL+ S ++++ +SV+ Q     + S  G +LEV+ KI+G +A+IRVQ+ENVNH
Sbjct:   308 MKMTETDKLDNSSSNTSPSSVEYQVNQKPSKSNRGSDLEVQVKIVGEEAIIRVQTENVNH 367

Query:   460 PAAKLMSSLRDLDLQLHHASMSCVNDLMLQDIVVRVPDGLRTED 503
             P + LMS+L ++D ++ HA+ S ++ +M+QD+VV VP+GLR+ED
Sbjct:   368 PTSALMSALMEMDCRVQHANASRLSQVMVQDVVVLVPEGLRSED 411
GO:0003677 "DNA binding" evidence=ISS
GO:0005634 "nucleus" evidence=ISM
GO:0003700 "sequence-specific DNA binding transcription factor activity" evidence=ISS
GO:0006355 "regulation of transcription, DNA-dependent" evidence=TAS
TAIR|locus:2035609 MYC2 "AT1G32640" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2141055 MYC4 "AT4G17880" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2178555 MYC3 "AT5G46760" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|Q336P5 Os10g0575000 "Os10g0575000 protein" [Oryza sativa Japonica Group (taxid:39947)] Back     alignment and assigned GO terms
TAIR|locus:2172932 NIG1 "AT5G46830" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2039094 AIB "AT2G46510" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2035237 AT1G01260 "AT1G01260" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2130619 AT4G16430 "AT4G16430" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2118524 TT8 "AT4G09820" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
O49687BH004_ARATHNo assigned EC number0.36680.96890.8471yesno

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
pfam14215171 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB trans 3e-67
cd0008360 cd00083, HLH, Helix-loop-helix domain, found in sp 3e-13
smart0035353 smart00353, HLH, helix loop helix domain 1e-11
pfam0001052 pfam00010, HLH, Helix-loop-helix DNA-binding domai 4e-10
pfam05793528 pfam05793, TFIIF_alpha, Transcription initiation f 0.002
>gnl|CDD|222598 pfam14215, bHLH-MYC_N, bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
 Score =  214 bits (546), Expect = 3e-67
 Identities = 83/191 (43%), Positives = 114/191 (59%), Gaps = 20/191 (10%)

Query: 26  LQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPA 85
           LQQRLQ +V+S  E W+YAIFWQ +S D +G   L WGDG+Y G           +    
Sbjct: 1   LQQRLQALVES--EQWSYAIFWQ-LSPDQSG--VLGWGDGYYNGEIKTRKTVAEEL---- 51

Query: 86  PGAALDNNMERKRAISSIRGIQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVG 145
                   ++RK+ +        S +    D + +   D+TDTEWFY++S+T SF  G G
Sbjct: 52  -------GLQRKKVLRE----LYSLLSGSRDAAALSPEDLTDTEWFYLVSMTFSFPPGEG 100

Query: 146 IPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFVCIPTSCGVLELGSSDLIREN 205
           +PG+A +SGS +WL+G++EL   NC R+  AQS GI+T VCIP   GV+ELGS++ I E+
Sbjct: 101 LPGKAFASGSHIWLSGANELDSSNCSRSWLAQSAGIQTIVCIPVPGGVVELGSTEKIPED 160

Query: 206 WGLVHQVKSLF 216
             LV  VKSLF
Sbjct: 161 LNLVQHVKSLF 171

This is the N-terminal region of a family of MYB and MYC transcription factors. The DNA-binding HLH domain is further downstream, pfam00010. Members of the MYB and MYC family regulate the biosynthesis of phenylpropanoids in several plant species (DOI:10.1007/s11295-009-0232-y). Length = 171
>gnl|CDD|238036 cd00083, HLH, Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>gnl|CDD|197674 smart00353, HLH, helix loop helix domain Back     alignment and domain information
>gnl|CDD|215654 pfam00010, HLH, Helix-loop-helix DNA-binding domain Back     alignment and domain information
>gnl|CDD|218752 pfam05793, TFIIF_alpha, Transcription initiation factor IIF, alpha subunit (TFIIF-alpha) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 515
PF14215163 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription fa 100.0
cd0008360 HLH Helix-loop-helix domain, found in specific DNA 99.24
smart0035353 HLH helix loop helix domain. 99.24
PF0001055 HLH: Helix-loop-helix DNA-binding domain only nucl 99.2
KOG1318411 consensus Helix loop helix transcription factor EB 98.62
KOG1319229 consensus bHLHZip transcription factor BIGMAX [Tra 98.36
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 98.23
KOG2483232 consensus Upstream transcription factor 2/L-myc-2 98.21
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 98.19
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 98.12
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 98.11
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 97.92
KOG4304250 consensus Transcriptional repressors of the hairy/ 97.91
KOG3561 803 consensus Aryl-hydrocarbon receptor nuclear transl 97.71
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 97.63
KOG0561 373 consensus bHLH transcription factor [Transcription 97.59
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 97.53
cd0492868 ACT_TyrKc Uncharacterized, N-terminal ACT domain o 97.51
KOG3960284 consensus Myogenic helix-loop-helix transcription 97.23
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 97.18
PLN0321793 transcription factor ATBS1; Provisional 97.17
KOG2588 953 consensus Predicted DNA-binding protein [Transcrip 97.14
KOG4029228 consensus Transcription factor HAND2/Transcription 97.04
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 97.04
PRK05007884 PII uridylyl-transferase; Provisional 96.79
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 96.75
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 96.39
PRK01759854 glnD PII uridylyl-transferase; Provisional 96.34
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 96.22
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 96.22
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 96.22
PRK0019490 hypothetical protein; Validated 96.21
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 96.21
PRK04374869 PII uridylyl-transferase; Provisional 96.18
PRK00275895 glnD PII uridylyl-transferase; Provisional 96.15
PRK05092931 PII uridylyl-transferase; Provisional 95.9
PRK03381774 PII uridylyl-transferase; Provisional 95.9
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 95.88
PRK03381 774 PII uridylyl-transferase; Provisional 95.45
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.37
PRK03059856 PII uridylyl-transferase; Provisional 95.18
PRK01759 854 glnD PII uridylyl-transferase; Provisional 95.04
TIGR01693850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.99
PRK05007 884 PII uridylyl-transferase; Provisional 94.89
COG2844867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 94.74
TIGR01693 850 UTase_glnD [Protein-PII] uridylyltransferase. This 94.69
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 94.54
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 94.54
PRK03059 856 PII uridylyl-transferase; Provisional 94.17
PRK00275 895 glnD PII uridylyl-transferase; Provisional 93.99
cd0489469 ACT_ACR-like_1 ACT domain-containing protein which 93.96
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 93.78
PRK04435147 hypothetical protein; Provisional 92.95
KOG4447173 consensus Transcription factor TWIST [Transcriptio 92.88
PRK05092 931 PII uridylyl-transferase; Provisional 92.84
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 92.82
cd0211660 ACT ACT domains are commonly involved in specifica 92.75
PRK04374 869 PII uridylyl-transferase; Provisional 92.43
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 92.03
PRK06027 286 purU formyltetrahydrofolate deformylase; Reviewed 91.81
TIGR00655 280 PurU formyltetrahydrofolate deformylase. This mode 91.66
PRK08577136 hypothetical protein; Provisional 91.61
KOG3910632 consensus Helix loop helix transcription factor [T 91.08
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 90.57
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 90.16
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 89.9
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 89.78
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 89.73
KOG3560 712 consensus Aryl-hydrocarbon receptor [Transcription 89.7
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 89.7
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 89.69
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 89.49
PRK13011 286 formyltetrahydrofolate deformylase; Reviewed 88.96
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 88.81
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 88.62
KOG3559 598 consensus Transcriptional regulator SIM1 [Transcri 88.17
KOG3558 768 consensus Hypoxia-inducible factor 1/Neuronal PAS 87.95
PRK13010 289 purU formyltetrahydrofolate deformylase; Reviewed 87.35
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 86.88
KOG3898254 consensus Transcription factor NeuroD and related 86.18
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 85.79
PRK07334403 threonine dehydratase; Provisional 85.53
PF13185148 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_ 84.72
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 84.51
COG2844 867 GlnD UTP:GlnB (protein PII) uridylyltransferase [P 84.32
PRK11589190 gcvR glycine cleavage system transcriptional repre 82.86
KOG4395285 consensus Transcription factor Atonal, contains HT 80.61
>PF14215 bHLH-MYC_N: bHLH-MYC and R2R3-MYB transcription factors N-terminal Back     alignment and domain information 
Probab=100.00  E-value=3.6e-53  Score=396.98  Aligned_cols=163  Identities=46%  Similarity=0.837  Sum_probs=146.9

Q ss_pred             HHHHHHHHHccCCCCcEEEEeeecccCCCCCCcceEEcceecCCCCCCCccccCCCCCCCCCcccchhHHHHHhhhhhhh
Q 046178           26 LQQRLQFIVQSQPEWWAYAIFWQTISNDDNGQLFLAWGDGHYQGTKDASPRARMSMPAPAPGAALDNNMERKRAISSIRG  105 (515)
Q Consensus        26 Lq~~L~~lv~~~~~~W~YAIFWq~~s~~~~g~~vL~WgDGy~~g~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~l~lre  105 (515)
                      |||+||+||+  +.+|+||||||+ ++++   ++|+||||||+|++++++..            .+.+.+|+++   ||+
T Consensus         1 Lq~~Lr~lv~--~~~W~YaVFWk~-~~~~---~~L~W~DG~~~g~~~~~~~~------------~~~~~~~~~~---l~~   59 (163)
T PF14215_consen    1 LQQRLRSLVE--NSQWTYAVFWKL-SPDN---SVLVWGDGYCNGPKETRKNG------------EEEQEQRSKV---LRE   59 (163)
T ss_pred             ChHHHHHHhC--CCCCcEEEEeEE-cCCC---CeeeEcceeecCCcccccch------------hhccchhhhH---HHH
Confidence            7999999997  579999999999 8774   49999999999998766421            1345566766   499


Q ss_pred             hcccccCCCccccccCCCCCCCceEEEEEeeeeeeCCCCCccceEeeCCCeeeeeCCCCcCcCcchhHHHHhhcCCceEE
Q 046178          106 IQQSFMGHEMDLSMMDGGDVTDTEWFYVMSLTRSFGAGVGIPGRAQSSGSLVWLTGSHELQFYNCERAKEAQSHGIETFV  185 (515)
Q Consensus       106 L~~sl~~g~~~~~~l~~~~vtd~Ewfyl~sm~~sf~~g~GlpG~a~~sg~~~Wl~~~~~~~~~~~~r~~~a~~~giqTiv  185 (515)
                      || ++++    ..++.+++|+|+||||++||+|+|  |+|+|||||++|+|+||++++.++.+.|+|+++||++||||||
T Consensus        60 l~-~~~~----~~~~~~~~v~~~e~f~~~s~~~sf--g~G~~G~a~~sg~~~Wi~~~~~~~~~~~~r~~~aq~~~~~Tiv  132 (163)
T PF14215_consen   60 LH-SSFS----SYALSPEEVTDTEWFYLVSMSYSF--GEGIPGRAAASGQHIWISGANELDSSYCERAWLAQFAGIQTIV  132 (163)
T ss_pred             Hh-hhcc----ccccccchhHHHHHHhhceeeEEe--cCCccEEEeecCccEEEeCCCccccccchhhhhhcccccceEE
Confidence            99 6554    556788999999999999999999  9999999999999999999999999999999999999999999


Q ss_pred             EEecCCceEeeccccccccChhHHHHHHHHh
Q 046178          186 CIPTSCGVLELGSSDLIRENWGLVHQVKSLF  216 (515)
Q Consensus       186 ciP~~~GVvELGSt~~v~E~~~lv~~ik~~F  216 (515)
                      |||+++||||||||++|+||+++|++||++|
T Consensus       133 ~IPv~~GVvELGSt~~I~Ed~~~v~~vk~~F  163 (163)
T PF14215_consen  133 CIPVPNGVVELGSTEKIPEDSNLVQRVKSLF  163 (163)
T ss_pred             EEEecCCEEEeeeeeeeccCHHHHHHHHhhC
Confidence            9999999999999999999999999999998

>cd00083 HLH Helix-loop-helix domain, found in specific DNA- binding proteins that act as transcription factors; 60-100 amino acids long Back     alignment and domain information
>smart00353 HLH helix loop helix domain Back     alignment and domain information
>PF00010 HLH: Helix-loop-helix DNA-binding domain only nuclear translocator protein (Arnt) Back     alignment and domain information
>KOG1318 consensus Helix loop helix transcription factor EB [Transcription] Back     alignment and domain information
>KOG1319 consensus bHLHZip transcription factor BIGMAX [Transcription] Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG2483 consensus Upstream transcription factor 2/L-myc-2 protein [Transcription] Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>KOG4304 consensus Transcriptional repressors of the hairy/E(spl) family (contains HLH) [Transcription] Back     alignment and domain information
>KOG3561 consensus Aryl-hydrocarbon receptor nuclear translocator [Transcription] Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>KOG0561 consensus bHLH transcription factor [Transcription] Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04928 ACT_TyrKc Uncharacterized, N-terminal ACT domain of an Arabidopsis/Oryza predicted tyrosine kinase and other related ACT domains Back     alignment and domain information
>KOG3960 consensus Myogenic helix-loop-helix transcription factor [Transcription] Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PLN03217 transcription factor ATBS1; Provisional Back     alignment and domain information
>KOG2588 consensus Predicted DNA-binding protein [Transcription] Back     alignment and domain information
>KOG4029 consensus Transcription factor HAND2/Transcription factor TAL1/TAL2/LYL1 [Transcription] Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>PRK03381 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK01759 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>PRK05007 PII uridylyl-transferase; Provisional Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>TIGR01693 UTase_glnD [Protein-PII] uridylyltransferase Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>PRK03059 PII uridylyl-transferase; Provisional Back     alignment and domain information
>PRK00275 glnD PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04894 ACT_ACR-like_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>KOG4447 consensus Transcription factor TWIST [Transcription] Back     alignment and domain information
>PRK05092 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PRK04374 PII uridylyl-transferase; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK06027 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>TIGR00655 PurU formyltetrahydrofolate deformylase Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>KOG3910 consensus Helix loop helix transcription factor [Transcription] Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>KOG3560 consensus Aryl-hydrocarbon receptor [Transcription] Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>PRK13011 formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>KOG3559 consensus Transcriptional regulator SIM1 [Transcription] Back     alignment and domain information
>KOG3558 consensus Hypoxia-inducible factor 1/Neuronal PAS domain protein NPAS1 [Signal transduction mechanisms; Transcription] Back     alignment and domain information
>PRK13010 purU formyltetrahydrofolate deformylase; Reviewed Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>KOG3898 consensus Transcription factor NeuroD and related HTH proteins [Transcription] Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PF13185 GAF_2: GAF domain; PDB: 2QYB_A 3KSG_B 3KSF_C 3KSI_A 3KSH_A 3MMH_A 3RFB_B 1F5M_A 3KO6_B 3HCY_A Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>COG2844 GlnD UTP:GlnB (protein PII) uridylyltransferase [Posttranslational modification, protein turnover, chaperones] Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>KOG4395 consensus Transcription factor Atonal, contains HTH domain [Transcription] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query515
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 1e-16
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 4e-14
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 6e-14
1hlo_A80 Protein (transcription factor MAX); transcriptiona 3e-13
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 5e-11
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 3e-10
4f3l_A 361 Mclock, circadian locomoter output cycles protein 3e-09
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 6e-07
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 4e-04
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 2e-04
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 3e-04
1a0a_A63 BHLH, protein (phosphate system positive regulator 8e-04
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 9e-04
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Length = 88 Back     alignment and structure
 Score = 74.3 bits (183), Expect = 1e-16
 Identities = 22/75 (29%), Positives = 39/75 (52%), Gaps = 5/75 (6%)

Query: 343 NHVEAERQRREKLNHRFYALRAVVP---NVSRMDKASLLSDAVSYIRELKVKIDDLESQL 399
            H   ERQRR +L   F+ALR  +P   N  +  K  +L  A +YI  ++ +   L S+ 
Sbjct: 9   THNVLERQRRNELKRSFFALRDQIPELENNEKAPKVVILKKATAYILSVQAEEQKLISEE 68

Query: 400 --LQRESKKVKLEIS 412
             L++  +++K ++ 
Sbjct: 69  DLLRKRREQLKHKLE 83
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Length = 83 Back     alignment and structure
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Length = 82 Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Length = 80 Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Length = 65 Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 361 Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Length = 387 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Length = 76 Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Length = 60 Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Length = 63 Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Length = 68 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
1am9_A82 Srebp-1A, protein (sterol regulatory element bindi 99.58
1nkp_B83 MAX protein, MYC proto-oncogene protein; transcrip 99.48
1hlo_A80 Protein (transcription factor MAX); transcriptiona 99.47
1nkp_A88 C-MYC, MYC proto-oncogene protein; transcription, 99.46
4h10_B71 Circadian locomoter output cycles protein kaput; B 99.42
1an4_A65 Protein (upstream stimulatory factor); protein-DNA 99.41
1nlw_A80 MAD protein, MAX dimerizer; transcription factor, 99.41
4ati_A118 MITF, microphthalmia-associated transcription fact 99.39
1a0a_A63 BHLH, protein (phosphate system positive regulator 99.37
4h10_A73 ARYL hydrocarbon receptor nuclear translocator-LI 99.32
3u5v_A76 Protein MAX, transcription factor E2-alpha chimer; 99.3
2ql2_B60 Neurod1, neurogenic differentiation factor 1; basi 99.0
1mdy_A68 Protein (MYOD BHLH domain); protein-DNA complex, t 98.99
4f3l_A 361 Mclock, circadian locomoter output cycles protein 98.73
4f3l_B 387 BMAL1B; BHLH, PAS, circadian rhythm proteins, tran 98.55
2lfh_A68 DNA-binding protein inhibitor ID-3; structural gen 98.48
4ath_A83 MITF, microphthalmia-associated transcription fact 98.22
4aya_A97 DNA-binding protein inhibitor ID-2; cell cycle; 2. 97.84
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 96.99
1u8s_A 192 Glycine cleavage system transcriptional repressor, 95.69
1f5m_A180 GAF; CGMP binding, signaling protein; 1.90A {Sacch 95.21
2nyi_A 195 Unknown protein; protein structure initiative, PSI 95.14
2nyi_A195 Unknown protein; protein structure initiative, PSI 94.57
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 94.35
3dba_A180 CONE CGMP-specific 3',5'-cyclic phosphodiesterase 94.22
1u8s_A192 Glycine cleavage system transcriptional repressor, 94.11
1vhm_A195 Protein YEBR; structural genomics, unknown functio 93.11
2vjw_A149 GAF-B, GAF family protein; histidine kinase, hypox 92.98
2e4s_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phosphod 92.89
3e0y_A181 Conserved domain protein; APC87688.2, geobacter su 92.65
3o1l_A 302 Formyltetrahydrofolate deformylase; structural gen 92.19
3mmh_A167 FRMSR, methionine-R-sulfoxide reductase; oxidoredu 92.18
3obi_A 288 Formyltetrahydrofolate deformylase; structural gen 92.15
3p96_A 415 Phosphoserine phosphatase SERB; ssgcid, structural 91.73
3hcy_A151 Putative two-component sensor histidine kinase PR; 91.43
3n0v_A 286 Formyltetrahydrofolate deformylase; formyl transfe 91.3
3trc_A171 Phosphoenolpyruvate-protein phosphotransferase; si 90.8
2w3g_A153 DOSS, two component sensor histidine kinase DEVS ( 90.52
3k2n_A177 Sigma-54-dependent transcriptional regulator; PSI- 90.5
3ksh_A160 Putative uncharacterized protein; FRMSR, free-Met- 90.4
3rfb_A171 Putative uncharacterized protein; FRMSR, GAF, oxid 90.19
3lou_A 292 Formyltetrahydrofolate deformylase; structural gen 89.76
3ci6_A171 Phosphoenolpyruvate-protein phosphotransferase; PE 89.35
2qyb_A181 Membrane protein, putative; GAF domain, domain of 88.82
2zmf_A189 CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 88.71
3oov_A169 Methyl-accepting chemotaxis protein, putative; str 87.05
1ykd_A398 Adenylate cyclase; GAF domain, bound cyclic AMP li 86.59
3ibj_A691 CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE 84.09
3nrb_A 287 Formyltetrahydrofolate deformylase; N-terminal ACT 83.07
2f1f_A164 Acetolactate synthase isozyme III small subunit; f 83.03
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 82.59
1mc0_A368 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF 82.0
1y7p_A 223 Hypothetical protein AF1403; structural genomics, 80.27
>1am9_A Srebp-1A, protein (sterol regulatory element binding protein 1A); basic-helix-loop- helix-leucine zipper, transcription factor; HET: DNA; 2.30A {Homo sapiens} SCOP: a.38.1.1 PDB: 1ukl_C Back     alignment and structure
Probab=99.58  E-value=2.2e-15  Score=125.15  Aligned_cols=65  Identities=23%  Similarity=0.416  Sum_probs=60.7

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhccCCCC-CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178          340 TPLNHVEAERQRREKLNHRFYALRAVVPNV-SRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES  404 (515)
Q Consensus       340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~~-~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s  404 (515)
                      .+.+|+.+||+||++||++|..|+++||.. .|+||++||.+||+||++|+.+++.|+.+...+..
T Consensus         6 rr~~H~~~ErrRR~~in~~f~~L~~lvP~~~~k~~Ka~IL~~Ai~YI~~Lq~~~~~L~~e~~~L~~   71 (82)
T 1am9_A            6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (82)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHhhhhHHHHHHHHHHHHHHHHHHhccCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356899999999999999999999999986 89999999999999999999999999999977654
>1nkp_B MAX protein, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 PDB: 1an2_A* 1r05_A 1nlw_B Back     alignment and structure
>1hlo_A Protein (transcription factor MAX); transcriptional regulation, DNA binding, complex (transcription factor MAX/DNA), transcription/DNA complex; HET: DNA; 2.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nkp_A C-MYC, MYC proto-oncogene protein; transcription, DNA, BHLHZ, heterodimer, transcription/DNA complex; 1.80A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4h10_B Circadian locomoter output cycles protein kaput; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>1an4_A Protein (upstream stimulatory factor); protein-DNA complex, double helix, overhanging base, transcription/DNA complex; HET: DNA; 2.90A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>1nlw_A MAD protein, MAX dimerizer; transcription factor, DNA, BHLHZ, transcription/DNA complex; 2.00A {Homo sapiens} SCOP: a.38.1.1 Back     alignment and structure
>4ati_A MITF, microphthalmia-associated transcription factor; DNA-binding protein-DNA complex, melanoma; 2.60A {Mus musculus} PDB: 4atk_A Back     alignment and structure
>1a0a_A BHLH, protein (phosphate system positive regulatory protein PHO4); transcription factor, basic helix loop helix; HET: DNA; 2.80A {Saccharomyces cerevisiae} SCOP: a.38.1.1 Back     alignment and structure
>4h10_A ARYL hydrocarbon receptor nuclear translocator-LI 1; BHLH, circadian transcription, transcription-DNA complex; 2.40A {Homo sapiens} Back     alignment and structure
>3u5v_A Protein MAX, transcription factor E2-alpha chimer; basic helix-loop-helix (BHLH); 1.70A {Mus musculus} PDB: 2ql2_A* Back     alignment and structure
>2ql2_B Neurod1, neurogenic differentiation factor 1; basic-helix-loop-helix; HET: DNA; 2.50A {Mus musculus} Back     alignment and structure
>1mdy_A Protein (MYOD BHLH domain); protein-DNA complex, transcription/DNA complex; HET: DNA; 2.80A {Mus musculus} SCOP: a.38.1.1 PDB: 1mdy_B* Back     alignment and structure
>4f3l_A Mclock, circadian locomoter output cycles protein kaput; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>4f3l_B BMAL1B; BHLH, PAS, circadian rhythm proteins, transcription-activato; 2.27A {Mus musculus} Back     alignment and structure
>2lfh_A DNA-binding protein inhibitor ID-3; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative; NMR {Homo sapiens} Back     alignment and structure
>4ath_A MITF, microphthalmia-associated transcription factor; DNA binding protein, melanoma; HET: MSE; 1.95A {Mus musculus} Back     alignment and structure
>4aya_A DNA-binding protein inhibitor ID-2; cell cycle; 2.10A {Homo sapiens} Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>1f5m_A GAF; CGMP binding, signaling protein; 1.90A {Saccharomyces cerevisiae} SCOP: d.110.2.1 PDB: 3ko6_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>3dba_A CONE CGMP-specific 3',5'-cyclic phosphodiesterase alpha'; 3', GAF domain, cyclic nucleotide phosphodiesterase hydrolase, lipoprotein, membrane; HET: 35G; 2.57A {Gallus gallus} Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>1vhm_A Protein YEBR; structural genomics, unknown function; HET: MES; 2.10A {Escherichia coli} SCOP: d.110.2.1 Back     alignment and structure
>2vjw_A GAF-B, GAF family protein; histidine kinase, hypoxia sensing, hydrolase; HET: MSE; 2.0A {Mycobacterium smegmatis} PDB: 2vks_A Back     alignment and structure
>3e0y_A Conserved domain protein; APC87688.2, geobacter sulfurreducens PCA, structural genomics, PSI-2, midwest center for structural G MCSG; 3.10A {Geobacter sulfurreducens} Back     alignment and structure
>3o1l_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 2.20A {Pseudomonas syringae PV} Back     alignment and structure
>3mmh_A FRMSR, methionine-R-sulfoxide reductase; oxidoreductase; HET: SME MRD; 1.25A {Neisseria meningitidis} SCOP: d.110.2.0 Back     alignment and structure
>3obi_A Formyltetrahydrofolate deformylase; structural genomics, joint center for structural genomics, J protein structure initiative; HET: MSE; 1.95A {Rhodopseudomonas palustris} Back     alignment and structure
>3p96_A Phosphoserine phosphatase SERB; ssgcid, structural genomics, structural genomics center for infectious disease, hydrolas; 2.05A {Mycobacterium avium} Back     alignment and structure
>3hcy_A Putative two-component sensor histidine kinase PR; two-component sensor histidine kinase protein, structural GE PSI, MCSG; 2.80A {Sinorhizobium meliloti} Back     alignment and structure
>3n0v_A Formyltetrahydrofolate deformylase; formyl transferase, ACT domain, structural genomics, joint C structural genomics, JCSG; HET: MSE; 2.25A {Pseudomonas putida} Back     alignment and structure
>3trc_A Phosphoenolpyruvate-protein phosphotransferase; signal transduction; HET: MSE; 1.65A {Coxiella burnetii} Back     alignment and structure
>2w3g_A DOSS, two component sensor histidine kinase DEVS (GAF family protein); redox sensor, heme, hypoxia, GAF domain, transferase; HET: HEM; 1.40A {Mycobacterium tuberculosis} PDB: 2w3d_A* 2w3f_A* 2w3e_A* 2w3h_A* 2y79_A* 2y8h_A* 2vzw_A* Back     alignment and structure
>3k2n_A Sigma-54-dependent transcriptional regulator; PSI-2, protein structure initiative, structural genomics; 2.50A {Chlorobium tepidum tls} Back     alignment and structure
>3ksh_A Putative uncharacterized protein; FRMSR, free-Met-R-SO, oxidoreductase; 1.50A {Staphylococcus aureus} SCOP: d.110.2.0 PDB: 3ksf_A 3ksi_A 3ksg_A* Back     alignment and structure
>3rfb_A Putative uncharacterized protein; FRMSR, GAF, oxidoreductase, SME; HET: SME; 2.30A {Streptococcus pneumoniae} Back     alignment and structure
>3lou_A Formyltetrahydrofolate deformylase; structural genomics, JOI for structural genomics, JCSG, protein structure initiative hydrolase; HET: MSE; 1.90A {Burkholderia mallei} Back     alignment and structure
>3ci6_A Phosphoenolpyruvate-protein phosphotransferase; PEP-phosphotransferase, GAF domain, structura genomics, PSI-2, protein structure initiative; HET: MSE P4G; 1.55A {Acinetobacter SP} Back     alignment and structure
>2qyb_A Membrane protein, putative; GAF domain, domain of putative membrane protein, PSI-2, MCSG structural genomics; 2.40A {Geobacter sulfurreducens pca} Back     alignment and structure
>2zmf_A CAMP and CAMP-inhibited CGMP 3',5'-cyclic phospho 10A; GAF domain, phosphodiesterase, CGMP-binding, HYD nucleotide-binding, structural genomics; HET: MSE CMP; 2.10A {Homo sapiens} Back     alignment and structure
>3oov_A Methyl-accepting chemotaxis protein, putative; structural genomics, PSI-2, protein structure initiative; 2.20A {Geobacter sulfurreducens} Back     alignment and structure
>1ykd_A Adenylate cyclase; GAF domain, bound cyclic AMP ligand, lyase; HET: CMP; 1.90A {Anabaena SP} Back     alignment and structure
>3ibj_A CGMP-dependent 3',5'-cyclic phosphodiesterase; PDE2A, GAF-domains, allosteric regulation hydrolase, membrane; 3.02A {Homo sapiens} Back     alignment and structure
>3nrb_A Formyltetrahydrofolate deformylase; N-terminal ACT domain, structural genomics, joint center for structural genomics, JCSG; HET: MSE FLC; 2.05A {Pseudomonas putida} Back     alignment and structure
>2f1f_A Acetolactate synthase isozyme III small subunit; ferredoxin fold, ACT domain, transferase; HET: P33 1PE; 1.75A {Escherichia coli} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>1mc0_A 3',5'-cyclic nucleotide phosphodiesterase 2A; GAF domain, 3',5' guanosine monophosphate, hydrolase; HET: PCG; 2.86A {Mus musculus} SCOP: d.110.2.1 d.110.2.1 Back     alignment and structure
>1y7p_A Hypothetical protein AF1403; structural genomics, protein structure initiative, PSI, alpha-beta-alpha sandwich; HET: RIP; 1.90A {Archaeoglobus fulgidus} SCOP: c.23.1.7 d.58.18.12 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 515
d1nkpb_83 a.38.1.1 (B:) Max protein {Human (Homo sapiens) [T 3e-15
d1nkpa_88 a.38.1.1 (A:) Myc proto-oncogene protein {Human (H 4e-14
d1nlwa_79 a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [T 9e-14
d1uklc_61 a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId 3e-13
d1am9a_80 a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxI 2e-12
d1an4a_65 a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapien 5e-12
d1mdya_68 a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus muscul 1e-11
d1a0aa_63 a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Sa 6e-11
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Length = 83 Back     information, alignment and structure

class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: Max protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 68.7 bits (168), Expect = 3e-15
 Identities = 18/74 (24%), Positives = 39/74 (52%), Gaps = 4/74 (5%)

Query: 343 NHVEAERQRREKLNHRFYALRAVVP--NVSRMDKASLLSDAVSYIRELKVKIDDLESQL- 399
           +H   ER+RR+ +   F++LR  VP     +  +A +L  A  YI+ ++ K    +  + 
Sbjct: 5   HHNALERKRRDHIKDSFHSLRDSVPSLQGEKASRAQILDKATEYIQYMRRKNHTHQQDID 64

Query: 400 -LQRESKKVKLEIS 412
            L+R++  ++ ++ 
Sbjct: 65  DLKRQNALLEQQVR 78
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Length = 88 Back     information, alignment and structure
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Length = 79 Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Length = 61 Back     information, alignment and structure
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Length = 80 Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Length = 65 Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 68 Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 63 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query515
d1am9a_80 SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} 99.45
d1nlwa_79 Mad protein {Human (Homo sapiens) [TaxId: 9606]} 99.44
d1nkpb_83 Max protein {Human (Homo sapiens) [TaxId: 9606]} 99.41
d1a0aa_63 Pho4 B/HLH domain {Baker's yeast (Saccharomyces ce 99.41
d1nkpa_88 Myc proto-oncogene protein {Human (Homo sapiens) [ 99.39
d1mdya_68 Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10 99.34
d1an4a_65 Usf B/HLH domain {Human (Homo sapiens) [TaxId: 960 99.28
d1uklc_61 SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} 99.28
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 97.11
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 96.64
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 95.83
d1f5ma_176 Hypothetical protein ykl069wp {Baker's yeast (Sacc 93.82
d1vhma_159 Hypothetical protein YebR {Escherichia coli [TaxId 93.77
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 92.4
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 92.22
d1mc0a1187 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF 91.22
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 87.44
>d1am9a_ a.38.1.1 (A:) SREBP-1a {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
class: All alpha proteins
fold: HLH-like
superfamily: HLH, helix-loop-helix DNA-binding domain
family: HLH, helix-loop-helix DNA-binding domain
domain: SREBP-1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.1e-14  Score=114.82  Aligned_cols=65  Identities=23%  Similarity=0.406  Sum_probs=59.5

Q ss_pred             CCccchHHHHHHHHHHHHHHHHHhccCCC-CCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 046178          340 TPLNHVEAERQRREKLNHRFYALRAVVPN-VSRMDKASLLSDAVSYIRELKVKIDDLESQLLQRES  404 (515)
Q Consensus       340 ~~~~H~~~ER~RR~kln~~f~~LrslvP~-~~k~dKasIL~daI~YIk~Lq~~v~~Le~~~~~~~s  404 (515)
                      .+.+|+.+||+||++||+.|..|++|||. ..|++|++||.+||+||++|+.+++.|+.+...+..
T Consensus         6 kR~~H~~~Er~RR~~in~~~~~L~~llP~~~~k~~K~~iL~~a~~yI~~L~~~~~~L~~e~~~lk~   71 (80)
T d1am9a_           6 KRTAHNAIEKRYRSSINDKIIELKDLVVGTEAKLNKSAVLRKAIDYIRFLQHSNQKLKQENLSLRT   71 (80)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHTCSSCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45689999999999999999999999997 479999999999999999999999999998876643
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1nkpb_ a.38.1.1 (B:) Max protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1a0aa_ a.38.1.1 (A:) Pho4 B/HLH domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1mdya_ a.38.1.1 (A:) Myod B/HLH domain {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d1an4a_ a.38.1.1 (A:) Usf B/HLH domain {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1uklc_ a.38.1.1 (C:) SREBP-2 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1f5ma_ d.110.2.1 (A:) Hypothetical protein ykl069wp {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Back     information, alignment and structure
>d1vhma_ d.110.2.1 (A:) Hypothetical protein YebR {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d1mc0a1 d.110.2.1 (A:215-401) 3',5'-cyclic nucleotide phosphodiesterase 2A, GAF A and GAF B domains {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure