Citrus Sinensis ID: 046180

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60------
Protein Sequence
MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVGMNK
Secondary Structure (PSIPRED)
ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccHcccHcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAqgaadsvkntvgmnk
Flexible Loop (DISEMBL)
mnssentsyqagqAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKakaqgaadsvkntvgmnk
Low Complexity Region (SEG)
MNSSENTSYqagqakgqaqekgnqMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVGMNK
Disordered region (IsUnstruct)
******************************************************************
Disordered Region (DISOPRED)
******************************************************************
Disordered Region (DISEMBL)
******************************************************************
Disordered Region (DISPRO)
******************************************************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVGMNK
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	66	2.2.26 [Sep-21-2011]
O49816	177	Late embryogenesis abunda	N/A	no	0.939	0.350	0.409	0.0005

>sp|O49816|LEA1_CICAR Late embryogenesis abundant protein 1 OS=Cicer arietinum PE=2 SV=1

 Score = 43.1 bits (100), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 4/66 (6%)

Query: 3   SSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDS----VQEAGNQMKAKAQGAADSV 58
           ++E T  +A    G+A+EKG++M       AQS KD+    +Q+ G ++K  AQGA D+V
Sbjct: 97  TTEATKEKAQDTTGRAREKGSEMGQSTKETAQSGKDNSAGFLQQTGEKVKGMAQGATDAV 156

Query: 59  KNTVGM 64
           K T GM
Sbjct: 157 KQTFGM 162

Cicer arietinum (taxid: 3827)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
225451889	66	PREDICTED: uncharacterized protein LOC10	1.0	1.0	0.712	1e-17
255560406	66	conserved hypothetical protein [Ricinus	1.0	1.0	0.742	2e-17
255575964	66	conserved hypothetical protein [Ricinus	0.984	0.984	0.738	7e-17
362799927	66	thrum pollen-predominant protein 1 [Linu	1.0	1.0	0.681	2e-16
21593307	67	pollen coat-like protein [Arabidopsis th	0.954	0.940	0.714	7e-16
449469355	67	PREDICTED: uncharacterized protein LOC10	0.984	0.970	0.692	1e-15
255584312	67	conserved hypothetical protein [Ricinus	0.984	0.970	0.692	2e-15
297805884	67	hypothetical protein ARALYDRAFT_494096 [	0.954	0.940	0.698	2e-15
15240998	67	Late embryogenesis abundant protein (LEA	0.954	0.940	0.698	2e-15
116831549	68	unknown [Arabidopsis thaliana]	0.954	0.926	0.698	3e-15

>gi|225451889|ref|XP_002282643.1| PREDICTED: uncharacterized protein LOC100242989 [Vitis vinifera] gi|298204415|emb|CBI16895.3| unnamed protein product [Vitis vinifera]

 Score = 93.6 bits (231), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 47/66 (71%), Positives = 57/66 (86%)

Query: 1  MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60
          M+ S+ TS+QAG+ KG+A+EKGNQMMDKVSNAAQS K++ QEAG Q+KA AQGAAD+VKN
Sbjct: 1  MSQSDKTSFQAGEVKGEAKEKGNQMMDKVSNAAQSTKETCQEAGQQIKAMAQGAADAVKN 60

Query: 61 TVGMNK 66
            GMNK
Sbjct: 61 ATGMNK 66

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255560406|ref|XP_002521218.1| conserved hypothetical protein [Ricinus communis] gi|223539583|gb|EEF41170.1| conserved hypothetical protein [Ricinus communis]

 Score = 93.6 bits (231), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 49/66 (74%), Positives = 57/66 (86%)

Query: 1  MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60
          MN S++ S+QAGQAKGQAQEK +QM DK SNAAQSAK+S QEAG QMKAKAQGAAD+VK+
Sbjct: 1  MNQSQDASFQAGQAKGQAQEKCSQMADKASNAAQSAKESCQEAGQQMKAKAQGAADTVKD 60

Query: 61 TVGMNK 66
           +G NK
Sbjct: 61 KLGANK 66

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255575964|ref|XP_002528878.1| conserved hypothetical protein [Ricinus communis] gi|223531677|gb|EEF33502.1| conserved hypothetical protein [Ricinus communis]

 Score = 91.3 bits (225), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 48/65 (73%), Positives = 56/65 (86%)

Query: 1  MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60
          MN S++ S+QAGQAKGQAQEK +QM DK SNAAQSAK+S QEAG QMKAKAQGAAD+VK+
Sbjct: 1  MNQSQDASFQAGQAKGQAQEKCSQMADKASNAAQSAKESCQEAGQQMKAKAQGAADTVKD 60

Query: 61 TVGMN 65
           +G N
Sbjct: 61 KLGAN 65

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|362799927|dbj|BAL41447.1| thrum pollen-predominant protein 1 [Linum grandiflorum]

 Score = 89.7 bits (221), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 45/66 (68%), Positives = 57/66 (86%)

Query: 1  MNSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60
          M++S+N SYQAGQAKGQ QEK + MMDK SNAAQS K+S+QE G+QM+AKAQGAA++ K 
Sbjct: 1  MDNSQNASYQAGQAKGQVQEKASGMMDKASNAAQSTKESIQETGSQMRAKAQGAAEATKE 60

Query: 61 TVGMNK 66
          ++GMNK
Sbjct: 61 SLGMNK 66

Source: Linum grandiflorum

Species: Linum grandiflorum

Genus: Linum

Family: Linaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|21593307|gb|AAM65256.1| pollen coat-like protein [Arabidopsis thaliana]

 Score = 87.8 bits (216), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 45/63 (71%), Positives = 52/63 (82%)

Query: 4  SENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVG 63
          S+N S+QAGQAKGQ QEK + MMDK SNAAQSAK+S+QE G Q+K KAQGA +SVKN  G
Sbjct: 5  SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLQETGQQIKEKAQGATESVKNATG 64

Query: 64 MNK 66
          MNK
Sbjct: 65 MNK 67

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449469355|ref|XP_004152386.1| PREDICTED: uncharacterized protein LOC101221104 [Cucumis sativus]

 Score = 87.0 bits (214), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 56/65 (86%)

Query: 2  NSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61
          ++S+N SYQ G+AKGQAQEK + MM+K S+AAQSAK+S+QE G QMKAKAQGAAD+VK+ 
Sbjct: 3  DNSQNMSYQIGEAKGQAQEKASNMMEKASDAAQSAKESIQEGGQQMKAKAQGAADAVKDA 62

Query: 62 VGMNK 66
           GMNK
Sbjct: 63 TGMNK 67

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584312|ref|XP_002532892.1| conserved hypothetical protein [Ricinus communis] gi|223527352|gb|EEF29497.1| conserved hypothetical protein [Ricinus communis]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 45/65 (69%), Positives = 54/65 (83%)

Query: 2  NSSENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61
          ++S+  +Y AG+AKGQ QEK + MMDK  N AQSAK+S+QEAGNQMKAKAQGAAD+VKN 
Sbjct: 3  DNSQKMAYHAGEAKGQTQEKASNMMDKAGNVAQSAKESMQEAGNQMKAKAQGAADAVKNA 62

Query: 62 VGMNK 66
           GMNK
Sbjct: 63 TGMNK 67

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297805884|ref|XP_002870826.1| hypothetical protein ARALYDRAFT_494096 [Arabidopsis lyrata subsp. lyrata] gi|297316662|gb|EFH47085.1| hypothetical protein ARALYDRAFT_494096 [Arabidopsis lyrata subsp. lyrata]

 Score = 86.7 bits (213), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 4  SENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVG 63
          S+N S+QAGQAKGQ QEK + MMDK SNAAQSAK+S+QE G Q+K KAQGA +SVKN  G
Sbjct: 5  SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLQETGQQIKEKAQGATESVKNATG 64

Query: 64 MNK 66
          +NK
Sbjct: 65 INK 67

Source: Arabidopsis lyrata subsp. lyrata

Species: Arabidopsis lyrata

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|15240998|ref|NP_198692.1| Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana] gi|10176901|dbj|BAB10133.1| pollen coat protein-like [Arabidopsis thaliana] gi|91806948|gb|ABE66201.1| unknown [Arabidopsis thaliana] gi|111074248|gb|ABH04497.1| At5g38760 [Arabidopsis thaliana] gi|332006974|gb|AED94357.1| Late embryogenesis abundant protein (LEA) family protein [Arabidopsis thaliana]

 Score = 86.3 bits (212), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 4  SENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVG 63
          S+N S+QAGQAKGQ QEK + MMDK SNAAQSAK+S++E G Q+K KAQGA +SVKN  G
Sbjct: 5  SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNATG 64

Query: 64 MNK 66
          MNK
Sbjct: 65 MNK 67

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|116831549|gb|ABK28727.1| unknown [Arabidopsis thaliana]

 Score = 85.9 bits (211), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 44/63 (69%), Positives = 52/63 (82%)

Query: 4  SENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVG 63
          S+N S+QAGQAKGQ QEK + MMDK SNAAQSAK+S++E G Q+K KAQGA +SVKN  G
Sbjct: 5  SQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNATG 64

Query: 64 MNK 66
          MNK
Sbjct: 65 MNK 67

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	66
TAIR|locus:2166630	67	AT5G38760 "AT5G38760" [Arabido	0.984	0.970	0.507	3.1e-12
TAIR|locus:2076844	68	AT3G02480 "AT3G02480" [Arabido	1.0	0.970	0.484	2.8e-11
TAIR|locus:2164012	67	AT5G53820 "AT5G53820" [Arabido	0.984	0.970	0.415	4.1e-10
TAIR|locus:2035134	114	AT1G52680 "AT1G52680" [Arabido	0.454	0.263	0.566	0.00027

TAIR|locus:2166630 AT5G38760 "AT5G38760" [Arabidopsis thaliana (taxid:3702)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 33/65 (50%), Positives = 42/65 (64%)

Query:     2 NSSENTSYXXXXXXXXXXXXXXXMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61
             ++S+N S+               MMDK SNAAQSAK+S++E G Q+K KAQGA +SVKN 
Sbjct:     3 SNSQNISFQAGQAKGQTQEKASTMMDKASNAAQSAKESLKETGQQIKEKAQGATESVKNA 62

Query:    62 VGMNK 66
              GMNK
Sbjct:    63 TGMNK 67

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0019953 "sexual reproduction" evidence=RCA

GO:0048445 "carpel morphogenesis" evidence=RCA

TAIR|locus:2076844 AT3G02480 "AT3G02480" [Arabidopsis thaliana (taxid:3702)]

 Score = 155 (59.6 bits), Expect = 2.8e-11, P = 2.8e-11
 Identities = 32/66 (48%), Positives = 40/66 (60%)

Query:     1 MNSSENTSYXXXXXXXXXXXXXXXMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN 60
             M++ +N SY               MMDK  +AA SA+DS+Q+ G QMK KAQGAAD VK+
Sbjct:     1 MDNKQNASYQAGQATGQTKEKAGGMMDKAKDAAASAQDSLQQTGQQMKEKAQGAADVVKD 60

Query:    61 TVGMNK 66
               GMNK
Sbjct:    61 KTGMNK 66

GO:0003674 "molecular_function" evidence=ND

GO:0009414 "response to water deprivation" evidence=IEP

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2164012 AT5G53820 "AT5G53820" [Arabidopsis thaliana (taxid:3702)]

 Score = 144 (55.7 bits), Expect = 4.1e-10, P = 4.1e-10
 Identities = 27/65 (41%), Positives = 42/65 (64%)

Query:     2 NSSENTSYXXXXXXXXXXXXXXXMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT 61
             N+S++ S+               ++DK SNAAQSAK+S+QE G Q+K KAQGA++++K  
Sbjct:     3 NNSQSMSFNAGQAKGQTQEKASNLIDKASNAAQSAKESIQEGGQQLKQKAQGASETIKEK 62

Query:    62 VGMNK 66
              G++K
Sbjct:    63 TGISK 67

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM

GO:0009830 "cell wall modification involved in abscission" evidence=RCA

TAIR|locus:2035134 AT1G52680 "AT1G52680" [Arabidopsis thaliana (taxid:3702)]

 Score = 89 (36.4 bits), Expect = 0.00027, P = 0.00027
 Identities = 17/30 (56%), Positives = 23/30 (76%)

Query:    36 AKDSVQEAGNQMKAKAQGAADSVKNTVGMN 65
             A   +Q+ G Q+K  AQGAAD+VKNT+GM+
Sbjct:    62 ASSVIQQTGGQVKNMAQGAADAVKNTLGMS 91


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.295   0.106   0.257    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       66        51   0.00091  102 3  10 24  0.40    27
                                                     29  0.44    26


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  361 (39 KB)
  Total size of DFA:  66 KB (2062 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  8.22u 0.13s 8.35t   Elapsed:  00:00:01
  Total cpu time:  8.22u 0.13s 8.35t   Elapsed:  00:00:01
  Start:  Sat May 11 00:02:44 2013   End:  Sat May 11 00:02:45 2013

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009827 "plant-type cell wall modification" evidence=RCA

GO:0009860 "pollen tube growth" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	66
KOG4744	308	consensus Uncharacterized conserved protein [Funct	97.58
PF02987	44	LEA_4: Late embryogenesis abundant protein; InterP	97.22
PF02987	44	LEA_4: Late embryogenesis abundant protein; InterP	96.87
COG3237	67	Uncharacterized protein conserved in bacteria [Fun	95.91
KOG4744	308	consensus Uncharacterized conserved protein [Funct	95.79
PF14013	51	MT0933_antitox: MT0933-like antitoxin protein	85.28
PF05957	94	DUF883: Bacterial protein of unknown function (DUF	84.18
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	84.01
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	81.64

>KOG4744 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.58  E-value=0.00028  Score=53.05  Aligned_cols=38  Identities=37%  Similarity=0.459  Sum_probs=31.1

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 046180            5 ENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQE   42 (66)
Q Consensus         5 ~~~s~~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qq   42 (66)
                      +.++++||++++.+.||+++.++.+.+++.+++|...|
T Consensus        85 ~~a~~kA~~a~~~A~eKag~A~d~a~dka~s~kD~a~q  122 (308)
T KOG4744|consen   85 DKASDKAGEAKDKAYEKAGSAKDTAKDKAGSAKDKASQ  122 (308)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhccchhhHHH
Confidence            56899999999999999999999888877655555333

>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress

Probab=97.22  E-value=0.002  Score=35.30  Aligned_cols=38  Identities=34%  Similarity=0.429  Sum_probs=23.9

Q ss_pred             HhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q 046180            7 TSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAG   44 (66)
Q Consensus         7 ~s~~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqag   44 (66)
                      ...+++|++..+.+|++++.+.+.+++.++||++.+..
T Consensus         4 a~~Ka~e~~d~a~~ka~e~kd~a~eKa~eaKd~a~eka   41 (44)
T PF02987_consen    4 AKEKASEAKDAAKEKAGEAKDAAAEKAEEAKDSAKEKA   41 (44)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566666666666666666666666666666655443

The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].

>PF02987 LEA_4: Late embryogenesis abundant protein; InterPro: IPR004238 Different types of late embryogenesis abundant (LEA) proteins are expressed at different stages of late embryogenesis in higher plant seed embryos and under conditions of dehydration stress

Probab=96.87  E-value=0.0076  Score=32.97  Aligned_cols=39  Identities=28%  Similarity=0.343  Sum_probs=29.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhH
Q 046180           16 GQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGA   54 (66)
Q Consensus        16 gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA   54 (66)
                      ..+.+|++++.+.+.+++..++|.+.+.+..+++.+.+.
T Consensus         2 e~a~~Ka~e~~d~a~~ka~e~kd~a~eKa~eaKd~a~ek   40 (44)
T PF02987_consen    2 EAAKEKASEAKDAAKEKAGEAKDAAAEKAEEAKDSAKEK   40 (44)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356788888888888888888888777777766665553

The function of these proteins is unknown. This entry represents a repeat characteristic of some LEA proteins, including LEA3 [, ].

>COG3237 Uncharacterized protein conserved in bacteria [Function unknown]

Probab=95.91  E-value=0.043  Score=33.35  Aligned_cols=62  Identities=32%  Similarity=0.370  Sum_probs=52.0

Q ss_pred             CCc-hhhHhhHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhh
Q 046180            1 MNS-SENTSYQAGQAKGQAQEKGNQMMD----KVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTV   62 (66)
Q Consensus         1 ms~-s~~~s~~AGea~gqaqeK~~~~m~----~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~   62 (66)
                      ||. +++..-.+-+++|.++|..+.+.+    .+..+++.++-++|+.-+.+|+++.++.|.+++.+
T Consensus         1 M~~~~dr~~g~~~q~~GkvKE~~Gk~Tgd~~l~aeGka~ka~gkvqe~~g~aKd~vk~a~d~~~~~~   67 (67)
T COG3237           1 MSDEKDRIEGKAKQAKGKVKEGVGKATGDDSLEAEGKADKAKGKVQERVGDAKDKVKKAVDDVKNRL   67 (67)
T ss_pred             CCchHHHHHHHHHHhhhHHHHHHccccCCHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            543 367888899999999999999886    46667788888999999999999999999988753

>KOG4744 consensus Uncharacterized conserved protein [Function unknown]

Probab=95.79  E-value=0.052  Score=41.02  Aligned_cols=27  Identities=41%  Similarity=0.489  Sum_probs=16.3

Q ss_pred             HHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 046180           34 QSAKDSVQEAGNQMKAKAQGAADSVKN   60 (66)
Q Consensus        34 q~AKd~~qqagqqvk~~aqgA~davK~   60 (66)
                      -++++++.++.+.++++++.+.+..++
T Consensus       202 ~~A~dk~~et~e~~Kdka~d~~e~A~d  228 (308)
T KOG4744|consen  202 GSAKDKAAETAEKAKDKAQDAKEKAKD  228 (308)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence            355555666666666666666665554

>PF14013 MT0933_antitox: MT0933-like antitoxin protein

Probab=85.28  E-value=3.8  Score=23.22  Aligned_cols=48  Identities=21%  Similarity=0.360  Sum_probs=30.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhhc
Q 046180           10 QAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTVG   63 (66)
Q Consensus        10 ~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~G   63 (66)
                      +|.+...+-.+|+.+.++++.+.+-      .-||..-.+....+.+++++.||
T Consensus         4 Kak~~~~~~~dk~~~~iDKA~d~vd------~kTGgKy~dqId~~~d~a~~~lg   51 (51)
T PF14013_consen    4 KAKDLASKNPDKIDQGIDKAGDFVD------EKTGGKYSDQIDKAQDKAKDALG   51 (51)
T ss_pred             HHHHHHHHChHHHHHHHHHHHHHHH------hhcCCchHHHHHHHHHHHHhhcC
Confidence            4556666666777777777777553      22455555555666667766665

>PF05957 DUF883: Bacterial protein of unknown function (DUF883); InterPro: IPR010279 This family consists of several bacterial proteins of unknown function that include the Escherichia coli genes for ElaB, YgaM and YqjD

Probab=84.18  E-value=7.1  Score=23.62  Aligned_cols=48  Identities=27%  Similarity=0.430  Sum_probs=29.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHH
Q 046180           13 QAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKN   60 (66)
Q Consensus        13 ea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~   60 (66)
                      .+...+.++++++-+++.+....+++.+.+..+++++.+..+.+.+.+
T Consensus        20 ~~~~~~~~~~~~~r~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~   67 (94)
T PF05957_consen   20 SAADLAGEKADEARDRAEEALDDARDRAEDAADQAREQAREAAEQTED   67 (94)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344445555556656666666667777777777777666666655544

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=84.01  E-value=6.4  Score=22.97  Aligned_cols=25  Identities=20%  Similarity=0.415  Sum_probs=11.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Q 046180           14 AKGQAQEKGNQMMDKVSNAAQSAKD   38 (66)
Q Consensus        14 a~gqaqeK~~~~m~~akdaAq~AKd   38 (66)
                      ++.+..+.++++.+++.+....+++
T Consensus        27 ~R~~l~~~~~~~~~~~~~~~~~~~~   51 (74)
T PF12732_consen   27 TREKLKDKAEDLKDKAKDLYEEAKE   51 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3444444444444444444444333

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=81.64  E-value=8.2  Score=22.51  Aligned_cols=25  Identities=20%  Similarity=0.213  Sum_probs=9.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHH
Q 046180            8 SYQAGQAKGQAQEKGNQMMDKVSNA   32 (66)
Q Consensus         8 s~~AGea~gqaqeK~~~~m~~akda   32 (66)
                      .+.+.+.+...++...++.+.+++.
T Consensus        32 ~~~~~~~~~~~~~~~~~~~~~~k~~   56 (74)
T PF12732_consen   32 KDKAEDLKDKAKDLYEEAKEKVKEK   56 (74)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3334444444444444433333333

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	66
2x43_S	67	Sherp; membrane protein; NMR {Leishmania major}	95.63
2x43_S	67	Sherp; membrane protein; NMR {Leishmania major}	95.5
1ryk_A	69	Protein YJBJ; alpha protein, structural genomics,	88.64
1yww_A	85	Hypothetical protein PA4738; structural genomics,	86.6

>2x43_S Sherp; membrane protein; NMR {Leishmania major}

Probab=95.63  E-value=0.023  Score=33.66  Aligned_cols=49  Identities=27%  Similarity=0.400  Sum_probs=30.1

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhh
Q 046180            5 ENTSYQAGQAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQG   53 (66)
Q Consensus         5 ~~~s~~AGea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqg   53 (66)
                      ++++..|+|++..+..|+.++-+-+.++|.+.+|.+.++.+.+|++.-|
T Consensus         7 Dk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKisg   55 (67)
T 2x43_S            7 DQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKLSG   55 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTTTS
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHhcc
Confidence            3455566666666666666666666666666666666666666666544

>2x43_S Sherp; membrane protein; NMR {Leishmania major}

Probab=95.50  E-value=0.014  Score=34.64  Aligned_cols=50  Identities=18%  Similarity=0.360  Sum_probs=44.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhh
Q 046180           13 QAKGQAQEKGNQMMDKVSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTV   62 (66)
Q Consensus        13 ea~gqaqeK~~~~m~~akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~   62 (66)
                      |++.++.+|+.++-+++-|++++-||.+...+-.+++++...++..|+++
T Consensus         4 E~kDk~~~~A~E~kd~~~dK~qElKdga~~KAaelkD~~~~~~E~iKDKi   53 (67)
T 2x43_S            4 ETRDQMKNAAAEAKDNVHDKIQELKDDVGNKAAEVRDAVSSTVESIKDKL   53 (67)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHTTTTTTTHHHHHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHhHHHHHHHHHHhHHHHHHHHh
Confidence            78999999999999999999999999888778888888888888888875

>1ryk_A Protein YJBJ; alpha protein, structural genomics, protein structure initiative, OCSP, NESG, PSI, northeast structural genomics consortium; NMR {Escherichia coli} SCOP: a.60.11.1

Probab=88.64  E-value=0.15  Score=29.29  Aligned_cols=58  Identities=16%  Similarity=0.150  Sum_probs=45.7

Q ss_pred             hhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHhh
Q 046180            5 ENTSYQAGQAKGQAQEKGNQMMDK----VSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNTV   62 (66)
Q Consensus         5 ~~~s~~AGea~gqaqeK~~~~m~~----akdaAq~AKd~~qqagqqvk~~aqgA~davK~~~   62 (66)
                      +++.=+.-+++|.++|..+.+.+.    +...++.+.-++|+....+++.+.+.+|.+.+.+
T Consensus         4 dki~G~~~q~kGk~Ke~~G~lTgd~~~~~eG~~~q~~Gk~q~~~g~~kd~~~~~~d~~~~~~   65 (69)
T 1ryk_A            4 DEAGGNWKQFKGKVKEQWGKLTDDDMTIIEGKRDQLVGKIQERYGYQKDQAEKEVVDWETRN   65 (69)
T ss_dssp             CCSSSHHHHHHHHHHHHTCSSCHHHHHHHTTCHHHHHHHHHHHTCCCHHHHHHHHHHHHHHH
T ss_pred             HHHhhhHHHHHhHHHHHHHHhcCCHhHHHcchHHHHhHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            445667789999999999988874    4444578888888999999998888888877654

>1yww_A Hypothetical protein PA4738; structural genomics, YJBJ, PSI, protein structure initiative, northeast structural genomics consortium, NESG; NMR {Pseudomonas aeruginosa}

Probab=86.60  E-value=0.13  Score=31.24  Aligned_cols=58  Identities=17%  Similarity=0.160  Sum_probs=44.2

Q ss_pred             hhhHhhHHHHHHHHHHHHHHHHHHH----HHHHHHHHHHHHHHHhHHHHHHHhhHHHHHHHh
Q 046180            4 SENTSYQAGQAKGQAQEKGNQMMDK----VSNAAQSAKDSVQEAGNQMKAKAQGAADSVKNT   61 (66)
Q Consensus         4 s~~~s~~AGea~gqaqeK~~~~m~~----akdaAq~AKd~~qqagqqvk~~aqgA~davK~~   61 (66)
                      .+++.=++-+++|.++|..+.+.+.    +...++.+.-++|+..+.+++.+...++.+++.
T Consensus        23 ~dkieG~~~q~kGk~KE~~GklTgd~~~eaEGk~~q~~Gk~qe~~g~~Kd~~k~~vd~~~~~   84 (85)
T 1yww_A           23 SDVIKGKWKQLTGKIKERWGDLTDDDLQAADGHAEYLVGKLQERYGWSKERAEQEVRDFSDR   84 (85)
T ss_dssp             CCCTTTSHHHHHHHHHHHCTTSCHHHHSSSCCSHHHHHHHHHHHTCCCHHHHHHHHHHHHHT
T ss_pred             HHHHHhHHHHHHHHHHHHHHHhcCCHhHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            3445556778899999998888764    344567888888888888888888888877664

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00