Citrus Sinensis ID: 046187
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | 2.2.26 [Sep-21-2011] | |||||||
| P29054 | 316 | Transcription initiation | N/A | no | 0.405 | 0.655 | 0.330 | 8e-27 | |
| P62916 | 316 | Transcription initiation | yes | no | 0.405 | 0.655 | 0.339 | 1e-26 | |
| P62915 | 316 | Transcription initiation | yes | no | 0.405 | 0.655 | 0.339 | 1e-26 | |
| Q5R886 | 316 | Transcription initiation | yes | no | 0.405 | 0.655 | 0.334 | 2e-26 | |
| Q4R3J5 | 316 | Transcription initiation | N/A | no | 0.405 | 0.655 | 0.334 | 2e-26 | |
| Q00403 | 316 | Transcription initiation | yes | no | 0.405 | 0.655 | 0.334 | 2e-26 | |
| Q2KIN8 | 316 | Transcription initiation | yes | no | 0.405 | 0.655 | 0.330 | 8e-26 | |
| Q54FD6 | 325 | Transcription initiation | yes | no | 0.398 | 0.624 | 0.328 | 2e-25 | |
| O28970 | 326 | Transcription initiation | yes | no | 0.556 | 0.871 | 0.293 | 1e-23 | |
| P29052 | 315 | Transcription initiation | yes | no | 0.382 | 0.619 | 0.335 | 2e-23 |
| >sp|P29054|TF2B_XENLA Transcription initiation factor IIB OS=Xenopus laevis GN=gtf2b PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 122 bits (305), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 70/212 (33%), Positives = 119/212 (56%), Gaps = 5/212 (2%)
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
T S+S MM+ A+ +I +++ + L +I D LF+ L+ RS +A+A+A
Sbjct: 106 TMSSSDRAMMN---AFKEITNMSDRINLPRNIIDRTNNLFKQVYEQKSLKGRSNDAIASA 162
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
L A R+ PRT +EI + + +KEIG+ K++ +AL+ + ++ + M RFC+
Sbjct: 163 CLYIACRQEGVPRTFKEICAVSRISKKEIGRCFKLILKALETN--VDLITTGDFMSRFCS 220
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI + G+
Sbjct: 221 NLGLTKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGV 280
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+VT+R+ Y+ + DL P+++ P +K
Sbjct: 281 ADVTIRQSYRLIYPRAPDLFPADFKFDTPVDK 312
|
General factor that plays a major role in the activation of eukaryotic genes transcribed by RNA polymerase II. Xenopus laevis (taxid: 8355) |
| >sp|P62916|TF2B_RAT Transcription initiation factor IIB OS=Rattus norvegicus GN=Gtf2b PE=2 SV=1 | Back alignment and function description |
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| >sp|P62915|TF2B_MOUSE Transcription initiation factor IIB OS=Mus musculus GN=Gtf2b PE=1 SV=1 | Back alignment and function description |
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| >sp|Q5R886|TF2B_PONAB Transcription initiation factor IIB OS=Pongo abelii GN=GTF2B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q4R3J5|TF2B_MACFA Transcription initiation factor IIB OS=Macaca fascicularis GN=GTF2B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q00403|TF2B_HUMAN Transcription initiation factor IIB OS=Homo sapiens GN=GTF2B PE=1 SV=1 | Back alignment and function description |
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| >sp|Q2KIN8|TF2B_BOVIN Transcription initiation factor IIB OS=Bos taurus GN=GTF2B PE=2 SV=1 | Back alignment and function description |
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| >sp|Q54FD6|TF2B_DICDI Transcription initiation factor IIB OS=Dictyostelium discoideum GN=gtf2b PE=3 SV=1 | Back alignment and function description |
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| >sp|O28970|TF2B_ARCFU Transcription initiation factor IIB OS=Archaeoglobus fulgidus (strain ATCC 49558 / VC-16 / DSM 4304 / JCM 9628 / NBRC 100126) GN=tfb PE=3 SV=1 | Back alignment and function description |
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| >sp|P29052|TF2B_DROME Transcription initiation factor IIB OS=Drosophila melanogaster GN=TfIIB PE=2 SV=1 | Back alignment and function description |
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Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| 255561140 | 511 | RNA polymerase II transcription factor, | 0.970 | 0.968 | 0.713 | 0.0 | |
| 225430796 | 540 | PREDICTED: uncharacterized protein LOC10 | 0.994 | 0.938 | 0.684 | 0.0 | |
| 297798234 | 506 | transcription factor IIB family protein | 0.949 | 0.956 | 0.669 | 1e-177 | |
| 356538170 | 488 | PREDICTED: uncharacterized protein LOC10 | 0.915 | 0.956 | 0.697 | 1e-176 | |
| 449451663 | 443 | PREDICTED: transcription initiation fact | 0.819 | 0.943 | 0.748 | 1e-175 | |
| 449504920 | 443 | PREDICTED: transcription initiation fact | 0.784 | 0.902 | 0.769 | 1e-174 | |
| 338762839 | 526 | hypothetical protein 111O18.13 [Coffea c | 0.933 | 0.904 | 0.656 | 1e-174 | |
| 15234473 | 503 | transcription initiation factor TFIIB [A | 0.954 | 0.968 | 0.677 | 1e-173 | |
| 357483371 | 487 | Transcription initiation factor IIB [Med | 0.823 | 0.862 | 0.736 | 1e-169 | |
| 9858771 | 425 | BAC19.3 [Solanum lycopersicum] | 0.811 | 0.974 | 0.709 | 1e-163 |
| >gi|255561140|ref|XP_002521582.1| RNA polymerase II transcription factor, putative [Ricinus communis] gi|223539260|gb|EEF40853.1| RNA polymerase II transcription factor, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 684 bits (1765), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 371/520 (71%), Positives = 415/520 (79%), Gaps = 25/520 (4%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYC AAQ RCAT+++GRSI EC SCGRV+ ERQ Q +H+FH RAQD PL LVTSDLP
Sbjct: 1 MKCPYCPAAQARCATSTSGRSILECTSCGRVVEERQFQQYHVFHNRAQDNPLSLVTSDLP 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSS 120
I QPQ +G DEDPF+PTGFIT FS WSL P+PL LRSS SFSG LAELERT EL +S+
Sbjct: 61 II-QPQ-GEGDDEDPFEPTGFITVFSTWSLEPNPLSLRSSLSFSGHLAELERTLELTASA 118
Query: 121 TTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
+ S SS+V++DNLRAY+QIIDVASILGLD DI DHAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISDHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVKVDSGEVTS--VD 358
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTT ITSGR+ +VD EVTS VD
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTVITSGRSSAPRVDPVEVTSPPVD 358
Query: 359 KDKQPETKSIKVNEVI-----ETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRT 413
KDKQP+ KS K N V+ + ESNG ++ G+ P + F QPWL F AS + T
Sbjct: 359 KDKQPDNKSNKTNNVLARAKEDIESNG---NSRGSRGPAWQN---FRQPWLQFGASGVTT 412
Query: 414 TGEKNQIVVQGDINEVQPGHQDLDQKLDEDT--KPATTTLRPSQFPCTPVSTVT--SLTW 469
+GEKN + G NE+Q Q+ ++K+D+ K T RP+QF P S ++ S+TW
Sbjct: 413 SGEKN---LNG--NELQGSCQEFEEKVDKQIIEKELTGASRPNQFSNPPASGMSTISITW 467
Query: 470 PFRPPPSMATASFQVVDPPKLQPGHIELKGSGVQAGSKND 509
PFR P+ + V PPKL PG+ ELKG +Q GS N+
Sbjct: 468 PFRSAPASGPSPI-VQPPPKLAPGYAELKGISIQNGSSNN 506
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225430796|ref|XP_002267728.1| PREDICTED: uncharacterized protein LOC100256546 [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|297798234|ref|XP_002867001.1| transcription factor IIB family protein [Arabidopsis lyrata subsp. lyrata] gi|297312837|gb|EFH43260.1| transcription factor IIB family protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
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| >gi|356538170|ref|XP_003537577.1| PREDICTED: uncharacterized protein LOC100815371 [Glycine max] | Back alignment and taxonomy information |
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| >gi|449451663|ref|XP_004143581.1| PREDICTED: transcription initiation factor IIB-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|449504920|ref|XP_004162331.1| PREDICTED: transcription initiation factor IIB-like [Cucumis sativus] | Back alignment and taxonomy information |
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| >gi|338762839|gb|AEI98626.1| hypothetical protein 111O18.13 [Coffea canephora] | Back alignment and taxonomy information |
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| >gi|15234473|ref|NP_195383.1| transcription initiation factor TFIIB [Arabidopsis thaliana] gi|2464915|emb|CAB16810.1| transcription initiation factor like protein [Arabidopsis thaliana] gi|7270613|emb|CAB80331.1| transcription initiation factor like protein [Arabidopsis thaliana] gi|16509378|emb|CAC82714.1| TFIIB-related protein [Arabidopsis thaliana] gi|30102720|gb|AAP21278.1| At4g37010 [Arabidopsis thaliana] gi|39545884|gb|AAR28005.1| TFIIB5/pBrp [Arabidopsis thaliana] gi|332661282|gb|AEE86682.1| transcription initiation factor TFIIB [Arabidopsis thaliana] | Back alignment and taxonomy information |
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| >gi|357483371|ref|XP_003611972.1| Transcription initiation factor IIB [Medicago truncatula] gi|358344389|ref|XP_003636272.1| Transcription initiation factor IIB [Medicago truncatula] gi|355502207|gb|AES83410.1| Transcription initiation factor IIB [Medicago truncatula] gi|355513307|gb|AES94930.1| Transcription initiation factor IIB [Medicago truncatula] gi|388496684|gb|AFK36408.1| unknown [Medicago truncatula] | Back alignment and taxonomy information |
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| >gi|9858771|gb|AAG01118.1|AF273333_3 BAC19.3 [Solanum lycopersicum] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 510 | ||||||
| TAIR|locus:2115255 | 503 | PBRP "plant-specific TFIIB-rel | 0.945 | 0.958 | 0.681 | 1e-169 | |
| DICTYBASE|DDB_G0290929 | 325 | gtf2b "transcription initiatio | 0.398 | 0.624 | 0.328 | 2.5e-26 | |
| UNIPROTKB|F1NXP2 | 306 | GTF2B "Uncharacterized protein | 0.388 | 0.647 | 0.335 | 9.3e-26 | |
| MGI|MGI:2385191 | 316 | Gtf2b "general transcription f | 0.388 | 0.626 | 0.335 | 2e-25 | |
| RGD|619735 | 316 | Gtf2b "general transcription f | 0.388 | 0.626 | 0.335 | 2e-25 | |
| UNIPROTKB|F2Z4J6 | 316 | LOC786656 "Uncharacterized pro | 0.388 | 0.626 | 0.33 | 4.4e-25 | |
| UNIPROTKB|E2RPG1 | 316 | GTF2B "Uncharacterized protein | 0.388 | 0.626 | 0.33 | 4.4e-25 | |
| UNIPROTKB|Q00403 | 316 | GTF2B "Transcription initiatio | 0.388 | 0.626 | 0.33 | 4.4e-25 | |
| UNIPROTKB|F2Z5J6 | 316 | GTF2B "Uncharacterized protein | 0.388 | 0.626 | 0.33 | 4.4e-25 | |
| ZFIN|ZDB-GENE-030131-3544 | 316 | gtf2b "general transcription f | 0.388 | 0.626 | 0.34 | 4.4e-25 |
| TAIR|locus:2115255 PBRP "plant-specific TFIIB-related protein" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 1650 (585.9 bits), Expect = 1.0e-169, P = 1.0e-169
Identities = 348/511 (68%), Positives = 388/511 (75%)
Query: 1 MKCPYCSAAQGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLP 60
MKCPYCS+AQGRC TTS+GRSITEC SCGRV+ ERQ QNHHLFH+RAQDTPLCLVTSDL
Sbjct: 1 MKCPYCSSAQGRCTTTSSGRSITECSSCGRVMEERQTQNHHLFHLRAQDTPLCLVTSDLQ 60
Query: 61 SIPQPQQNDGVDEDPFQPTGFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLXXX 120
+ QP D +EDPF+PTGFITAFS WSL PSP+F RSS SFSG LAELERT EL
Sbjct: 61 TAAQPSPED--EEDPFEPTGFITAFSTWSLEPSPIFARSSLSFSGHLAELERTLELASST 118
Query: 121 XXXXXXXVMMDNLRAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATA 180
V++DNLRAY+QIIDVASILGLD DI +HAFQLFRDCCSATCLRNRSVEALATA
Sbjct: 119 SNSNSSTVVVDNLRAYMQIIDVASILGLDCDISEHAFQLFRDCCSATCLRNRSVEALATA 178
Query: 181 ALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCT 240
LVQAIREAQEPRTLQEISIAANV QKEIGKYIKILGEALQLSQPINSNSI+VHMPRFCT
Sbjct: 179 CLVQAIREAQEPRTLQEISIAANVQQKEIGKYIKILGEALQLSQPINSNSISVHMPRFCT 238
Query: 241 LLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGL 300
LLQLNKSAQ LATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICK+TGL
Sbjct: 239 LLQLNKSAQELATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKITGL 298
Query: 301 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTITSGRAPTVK-VDSGEVTSVDK 359
TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTI++ R+ T + VD E + V+K
Sbjct: 299 TEVTLRKVYKELLENWDDLLPSNYTPAVPPEKAFPTTTISTTRSTTPRAVDPPEPSFVEK 358
Query: 360 DKQPETKSIKVNEVIETESNGPNADADGAHAPTLKRPSPFSQPWLHFAASNIRTTGEKNQ 419
DK P K I E + P D K+P F QPWL F +++ E
Sbjct: 359 DK-PSAKPI---ETFDHTYQQPKGKED-------KQPK-FRQPWL-FGTASVMNPAE--M 403
Query: 420 IVVQGDINEVQPGHQDLD----QKL-DEDTKPATTTLRP-SQFPCTPV-ST-VTSLTWPF 471
I N + Q LD Q+L D++T P LR + FP P ST ++++ W F
Sbjct: 404 ISEPAKPNAMDYEKQQLDKQQQQQLGDKETLPIY--LRDHNPFPSNPSPSTGISTINWSF 461
Query: 472 RPPPSMATAS-FQVVDPPKLQPGHIELKGSG 501
RP ++S V+ PPKL PG+ E++GSG
Sbjct: 462 RPSVVPGSSSNLPVIHPPKLPPGYAEIRGSG 492
|
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| DICTYBASE|DDB_G0290929 gtf2b "transcription initiation factor IIB" [Dictyostelium discoideum (taxid:44689)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F1NXP2 GTF2B "Uncharacterized protein" [Gallus gallus (taxid:9031)] | Back alignment and assigned GO terms |
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| MGI|MGI:2385191 Gtf2b "general transcription factor IIB" [Mus musculus (taxid:10090)] | Back alignment and assigned GO terms |
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| RGD|619735 Gtf2b "general transcription factor IIB" [Rattus norvegicus (taxid:10116)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F2Z4J6 LOC786656 "Uncharacterized protein" [Bos taurus (taxid:9913)] | Back alignment and assigned GO terms |
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| UNIPROTKB|E2RPG1 GTF2B "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] | Back alignment and assigned GO terms |
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| UNIPROTKB|Q00403 GTF2B "Transcription initiation factor IIB" [Homo sapiens (taxid:9606)] | Back alignment and assigned GO terms |
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| UNIPROTKB|F2Z5J6 GTF2B "Uncharacterized protein" [Sus scrofa (taxid:9823)] | Back alignment and assigned GO terms |
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| ZFIN|ZDB-GENE-030131-3544 gtf2b "general transcription factor IIB" [Danio rerio (taxid:7955)] | Back alignment and assigned GO terms |
|---|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
No confident hit for EC number transfering in SWISSPROT detected by BLAST
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 510 | |||
| COG1405 | 285 | COG1405, SUA7, Transcription initiation factor TFI | 7e-39 | |
| PRK00423 | 310 | PRK00423, tfb, transcription initiation factor IIB | 2e-33 | |
| cd00043 | 88 | cd00043, CYCLIN, Cyclin box fold | 5e-15 | |
| smart00385 | 83 | smart00385, CYCLIN, domain present in cyclins, TFI | 2e-14 | |
| pfam00382 | 71 | pfam00382, TFIIB, Transcription factor TFIIB repea | 2e-10 | |
| cd00043 | 88 | cd00043, CYCLIN, Cyclin box fold | 2e-06 | |
| pfam00382 | 71 | pfam00382, TFIIB, Transcription factor TFIIB repea | 1e-05 | |
| smart00385 | 83 | smart00385, CYCLIN, domain present in cyclins, TFI | 0.004 |
| >gnl|CDD|224323 COG1405, SUA7, Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] | Back alignment and domain information |
|---|
Score = 142 bits (361), Expect = 7e-39
Identities = 65/182 (35%), Positives = 100/182 (54%), Gaps = 2/182 (1%)
Query: 134 RAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPR 193
A ++ +AS LGL + + A +++R LR RS+E++A A + A R PR
Sbjct: 99 TALEELERIASALGLPESVRETAARIYRKAVDKGLLRGRSIESVAAACIYAACRINGVPR 158
Query: 194 TLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLAT 253
TL EI+ A V +KEIG+ ++L L+L I + ++PRF + L L+ + A
Sbjct: 159 TLDEIAKALGVSKKEIGRTYRLLVRELKL--KIPPVDPSDYIPRFASKLGLSDEVRRKAI 216
Query: 254 HIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
I + ++P ++AAAIYLA L +R+TQ E+ KV G+TEVT+R YKEL
Sbjct: 217 EIVKKAKRAGLTAGKSPAGLAAAAIYLASLLLGERRTQKEVAKVAGVTEVTIRNRYKELA 276
Query: 314 EN 315
+
Sbjct: 277 DA 278
|
Length = 285 |
| >gnl|CDD|234758 PRK00423, tfb, transcription initiation factor IIB; Reviewed | Back alignment and domain information |
|---|
| >gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold | Back alignment and domain information |
|---|
| >gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma | Back alignment and domain information |
|---|
| >gnl|CDD|109440 pfam00382, TFIIB, Transcription factor TFIIB repeat | Back alignment and domain information |
|---|
| >gnl|CDD|238003 cd00043, CYCLIN, Cyclin box fold | Back alignment and domain information |
|---|
| >gnl|CDD|109440 pfam00382, TFIIB, Transcription factor TFIIB repeat | Back alignment and domain information |
|---|
| >gnl|CDD|214641 smart00385, CYCLIN, domain present in cyclins, TFIIB and Retinoblastoma | Back alignment and domain information |
|---|
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| KOG1597 | 308 | consensus Transcription initiation factor TFIIB [T | 100.0 | |
| PRK00423 | 310 | tfb transcription initiation factor IIB; Reviewed | 100.0 | |
| COG1405 | 285 | SUA7 Transcription initiation factor TFIIIB, Brf1 | 100.0 | |
| KOG1598 | 521 | consensus Transcription initiation factor TFIIIB, | 100.0 | |
| PF00382 | 71 | TFIIB: Transcription factor TFIIB repeat; InterPro | 99.71 | |
| KOG0835 | 367 | consensus Cyclin L [General function prediction on | 99.66 | |
| PF00382 | 71 | TFIIB: Transcription factor TFIIB repeat; InterPro | 99.65 | |
| KOG0834 | 323 | consensus CDK9 kinase-activating protein cyclin T | 99.64 | |
| TIGR00569 | 305 | ccl1 cyclin ccl1. University). | 99.58 | |
| COG5333 | 297 | CCL1 Cdk activating kinase (CAK)/RNA polymerase II | 99.4 | |
| PRK00423 | 310 | tfb transcription initiation factor IIB; Reviewed | 99.4 | |
| PF08271 | 43 | TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013 | 99.35 | |
| KOG0794 | 264 | consensus CDK8 kinase-activating protein cyclin C | 99.19 | |
| cd00043 | 88 | CYCLIN Cyclin box fold. Protein binding domain fun | 99.03 | |
| smart00385 | 83 | CYCLIN domain present in cyclins, TFIIB and Retino | 99.01 | |
| cd00043 | 88 | CYCLIN Cyclin box fold. Protein binding domain fun | 99.01 | |
| smart00385 | 83 | CYCLIN domain present in cyclins, TFIIB and Retino | 98.97 | |
| COG1405 | 285 | SUA7 Transcription initiation factor TFIIIB, Brf1 | 98.93 | |
| KOG1597 | 308 | consensus Transcription initiation factor TFIIB [T | 98.77 | |
| KOG0656 | 335 | consensus G1/S-specific cyclin D [Cell cycle contr | 98.53 | |
| KOG2496 | 325 | consensus Cdk activating kinase (CAK)/RNA polymera | 98.14 | |
| PF00134 | 127 | Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR | 97.97 | |
| KOG0653 | 391 | consensus Cyclin B and related kinase-activating p | 97.93 | |
| PF02984 | 118 | Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR | 97.87 | |
| KOG1598 | 521 | consensus Transcription initiation factor TFIIIB, | 97.78 | |
| PF01857 | 135 | RB_B: Retinoblastoma-associated protein B domain; | 97.72 | |
| COG5024 | 440 | Cyclin [Cell division and chromosome partitioning] | 97.66 | |
| KOG4557 | 262 | consensus Origin recognition complex, subunit 6 [R | 97.6 | |
| KOG0655 | 408 | consensus G1/S-specific cyclin E [Cell cycle contr | 96.27 | |
| KOG0835 | 367 | consensus Cyclin L [General function prediction on | 96.16 | |
| PF00134 | 127 | Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR | 95.7 | |
| TIGR02393 | 238 | RpoD_Cterm RNA polymerase sigma factor RpoD, C-ter | 95.6 | |
| TIGR00569 | 305 | ccl1 cyclin ccl1. University). | 95.16 | |
| PF02984 | 118 | Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR | 94.66 | |
| PF01857 | 135 | RB_B: Retinoblastoma-associated protein B domain; | 94.25 | |
| TIGR01206 | 54 | lysW lysine biosynthesis protein LysW. This very s | 94.2 | |
| PRK05657 | 325 | RNA polymerase sigma factor RpoS; Validated | 94.04 | |
| PRK07405 | 317 | RNA polymerase sigma factor SigD; Validated | 93.79 | |
| PRK09210 | 367 | RNA polymerase sigma factor RpoD; Validated | 93.73 | |
| KOG0834 | 323 | consensus CDK9 kinase-activating protein cyclin T | 93.43 | |
| PF11781 | 36 | RRN7: RNA polymerase I-specific transcription init | 93.29 | |
| PRK05911 | 257 | RNA polymerase sigma factor sigma-28; Reviewed | 93.11 | |
| TIGR02394 | 285 | rpoS_proteo RNA polymerase sigma factor RpoS. A si | 93.08 | |
| PRK05901 | 509 | RNA polymerase sigma factor; Provisional | 92.68 | |
| TIGR02997 | 298 | Sig70-cyanoRpoD RNA polymerase sigma factor, cyano | 92.43 | |
| PRK05949 | 327 | RNA polymerase sigma factor; Validated | 92.08 | |
| PHA00626 | 59 | hypothetical protein | 91.76 | |
| PF08613 | 149 | Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu | 91.65 | |
| PRK07921 | 324 | RNA polymerase sigma factor SigB; Reviewed | 91.44 | |
| TIGR02392 | 270 | rpoH_proteo alternative sigma factor RpoH. A sigma | 91.44 | |
| PRK00464 | 154 | nrdR transcriptional regulator NrdR; Validated | 91.36 | |
| PRK07406 | 373 | RNA polymerase sigma factor RpoD; Validated | 91.19 | |
| PRK00415 | 59 | rps27e 30S ribosomal protein S27e; Reviewed | 90.95 | |
| COG2051 | 67 | RPS27A Ribosomal protein S27E [Translation, riboso | 90.92 | |
| PF13248 | 26 | zf-ribbon_3: zinc-ribbon domain | 90.86 | |
| COG5333 | 297 | CCL1 Cdk activating kinase (CAK)/RNA polymerase II | 90.68 | |
| PRK07408 | 256 | RNA polymerase sigma factor SigF; Reviewed | 90.39 | |
| KOG1010 | 920 | consensus Rb (Retinoblastoma tumor suppressor)-rel | 90.2 | |
| PRK07598 | 415 | RNA polymerase sigma factor SigC; Validated | 90.09 | |
| PF08613 | 149 | Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eu | 89.94 | |
| TIGR00244 | 147 | transcriptional regulator NrdR. Members of this al | 89.81 | |
| COG1191 | 247 | FliA DNA-directed RNA polymerase specialized sigma | 89.15 | |
| PTZ00083 | 85 | 40S ribosomal protein S27; Provisional | 89.01 | |
| PF01667 | 55 | Ribosomal_S27e: Ribosomal protein S27; InterPro: I | 88.83 | |
| PF13240 | 23 | zinc_ribbon_2: zinc-ribbon domain | 88.54 | |
| KOG4164 | 497 | consensus Cyclin ik3-1/CABLES [Cell cycle control, | 88.49 | |
| PF05460 | 353 | ORC6: Origin recognition complex subunit 6 (ORC6); | 87.95 | |
| TIGR02098 | 38 | MJ0042_CXXC MJ0042 family finger-like domain. This | 87.84 | |
| PLN00209 | 86 | ribosomal protein S27; Provisional | 87.58 | |
| PRK00420 | 112 | hypothetical protein; Validated | 87.14 | |
| PF13613 | 53 | HTH_Tnp_4: Helix-turn-helix of DDE superfamily end | 86.8 | |
| PRK07500 | 289 | rpoH2 RNA polymerase factor sigma-32; Reviewed | 86.79 | |
| TIGR02885 | 231 | spore_sigF RNA polymerase sigma-F factor. Members | 86.64 | |
| PRK07670 | 251 | RNA polymerase sigma factor SigD; Validated | 86.63 | |
| PF10571 | 26 | UPF0547: Uncharacterised protein family UPF0547; I | 86.57 | |
| KOG4557 | 262 | consensus Origin recognition complex, subunit 6 [R | 86.53 | |
| PRK06288 | 268 | RNA polymerase sigma factor WhiG; Reviewed | 86.18 | |
| PF14803 | 34 | Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C. | 86.05 | |
| PF04545 | 50 | Sigma70_r4: Sigma-70, region 4; InterPro: IPR00763 | 86.0 | |
| PRK00432 | 50 | 30S ribosomal protein S27ae; Validated | 85.31 | |
| PRK08215 | 258 | sporulation sigma factor SigG; Reviewed | 85.21 | |
| COG1998 | 51 | RPS31 Ribosomal protein S27AE [Translation, riboso | 84.8 | |
| KOG0654 | 359 | consensus G2/Mitotic-specific cyclin A [Cell cycle | 84.65 | |
| PF13730 | 55 | HTH_36: Helix-turn-helix domain | 84.52 | |
| PF09538 | 108 | FYDLN_acid: Protein of unknown function (FYDLN_aci | 84.26 | |
| COG1645 | 131 | Uncharacterized Zn-finger containing protein [Gene | 84.04 | |
| PF03966 | 68 | Trm112p: Trm112p-like protein; InterPro: IPR005651 | 83.99 | |
| PF08792 | 33 | A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: I | 83.57 | |
| smart00342 | 84 | HTH_ARAC helix_turn_helix, arabinose operon contro | 83.57 | |
| PF13404 | 42 | HTH_AsnC-type: AsnC-type helix-turn-helix domain; | 83.52 | |
| smart00661 | 52 | RPOL9 RNA polymerase subunit 9. | 83.47 | |
| PF01325 | 60 | Fe_dep_repress: Iron dependent repressor, N-termin | 83.31 | |
| PRK11827 | 60 | hypothetical protein; Provisional | 83.12 | |
| PRK05658 | 619 | RNA polymerase sigma factor RpoD; Validated | 83.0 | |
| PF13412 | 48 | HTH_24: Winged helix-turn-helix DNA-binding; PDB: | 82.78 | |
| PF08279 | 55 | HTH_11: HTH domain; InterPro: IPR013196 Winged hel | 82.74 | |
| KOG2496 | 325 | consensus Cdk activating kinase (CAK)/RNA polymera | 82.6 | |
| TIGR02479 | 224 | FliA_WhiG RNA polymerase sigma factor, FliA/WhiG f | 82.18 | |
| TIGR02850 | 254 | spore_sigG RNA polymerase sigma-G factor. Members | 81.71 | |
| PRK00135 | 188 | scpB segregation and condensation protein B; Revie | 81.48 | |
| PF13384 | 50 | HTH_23: Homeodomain-like domain; PDB: 2X48_C. | 80.98 | |
| smart00342 | 84 | HTH_ARAC helix_turn_helix, arabinose operon contro | 80.65 | |
| COG1327 | 156 | Predicted transcriptional regulator, consists of a | 80.64 | |
| PF13936 | 44 | HTH_38: Helix-turn-helix domain; PDB: 2W48_A. | 80.3 | |
| PF13542 | 52 | HTH_Tnp_ISL3: Helix-turn-helix domain of transposa | 80.27 | |
| KOG0794 | 264 | consensus CDK8 kinase-activating protein cyclin C | 80.05 |
| >KOG1597 consensus Transcription initiation factor TFIIB [Transcription] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-76 Score=581.28 Aligned_cols=307 Identities=38% Similarity=0.520 Sum_probs=286.1
Q ss_pred CCCCCCCCCCC-cccccCCCCccccccccceecccceeecccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 046187 1 MKCPYCSAAQG-RCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPT 79 (510)
Q Consensus 1 m~Cp~C~~~~~-~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d~~~~~~~~d~p~~~~d~sRvg~~~dP~l~~ 79 (510)
|.|++|++.+. .++||++|| +||.+||+||++|+||+++|||+|+||+ .+.||||||++.|||+.+
T Consensus 1 ~~c~~C~~~~~~~V~d~~~gd--tvC~~CGlVl~~r~Id~~sEwrtfsnd~-----------~~~DPsrvG~~sNPlL~~ 67 (308)
T KOG1597|consen 1 MTCPDCKRHPENLVEDHSAGD--TVCSECGLVLEDRIIDEGSEWRTFSNDD-----------SDADPSRVGASSNPLLDG 67 (308)
T ss_pred CCCCCCCCCCCCeeeeccCCc--eecccCCeeeccccccccccccccccCC-----------CCCCccccCCCCCCCCCC
Confidence 78999999888 668999999 9999999999999999999999999996 255679999999999999
Q ss_pred CccceeecccCCCCcccccccccccchhhHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 046187 80 GFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQL 159 (510)
Q Consensus 80 ~~~tt~i~~~~~~npl~~~T~i~f~~~~~eL~R~~~~s~~~~~~~~~~~~er~L~a~~~I~~ic~~L~LP~~VidtA~~L 159 (510)
++++|||+|+.+.++.+ .++|.|+|++.++.+ +++. ...+|+.|..||+.|+||..+.|+|.++
T Consensus 68 g~L~T~I~~g~g~~s~~----------~s~l~~~Q~~~sm~~--~d~~----~~~a~~~I~~m~d~~~Lp~~I~d~A~~i 131 (308)
T KOG1597|consen 68 GDLSTFISKGTGTSSSF----------ASSLGKAQNRNSMSN--SDRV----LKAAFKEITAMCDRLSLPATIKDRANEI 131 (308)
T ss_pred CCcceeeecCCCCCHHH----------HHHHHHHhcccccCC--ccHH----HHHHHHHHHHHHHHhCCchHHHHHHHHH
Confidence 99999999997766543 245789998777755 5554 5669999999999999999999999999
Q ss_pred HHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccCCCCCcchhhhHHHHH
Q 046187 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFC 239 (510)
Q Consensus 160 yK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~pv~~~~p~~~I~Rfc 239 (510)
||++++.+.+|||+.++++|||||+|||++++|||||||+.+++|++|||||++|.|.+.|+...+....+..+||+|||
T Consensus 132 fk~v~~~k~lrGks~eai~AAclyiACRq~~~pRT~kEI~~~anv~kKEIgr~~K~i~~~l~~s~~~~s~~t~~~m~RFC 211 (308)
T KOG1597|consen 132 FKLVEDSKLLRGKSVEALAAACLYIACRQEDVPRTFKEISAVANVSKKEIGRCVKLIGEALETSVDLISISTGDFMPRFC 211 (308)
T ss_pred HHHHHHhhhhcCccHHHHHHHHHHHHHHhcCCCchHHHHHHHHcCCHHHHHHHHHHHHHHHhccchhhhhhHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999887766666899999999
Q ss_pred hhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHhhccc
Q 046187 240 TLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELLENWDDL 319 (510)
Q Consensus 240 s~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrYKEL~e~l~~L 319 (510)
+.|+|+..++++|.++++++.+..++.||+|.+||||+|||+++++.++++++||.+++||+|+|||+.||+||+++.+|
T Consensus 212 s~L~L~~~~q~aA~e~a~ka~~~~~~~gRsPiSIAAa~IYmisqls~~kkt~keI~~vtgVaE~TIr~sYK~Lyp~~~~l 291 (308)
T KOG1597|consen 212 SNLGLPKSAQEAATEIAEKAEEMDIRAGRSPISIAAAAIYMISQLSDEKKTQKEIGEVTGVAEVTIRNSYKDLYPHADKL 291 (308)
T ss_pred HhcCCCHHHHHHHHHHHHHHHHhccccCCCchhHHHHHHHHHHHhccCcccHHHHHHHhhhhHHHHHHHHHHHhhchhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCCCCCccCCCc
Q 046187 320 LPSNYTPAVPPEKAFPTT 337 (510)
Q Consensus 320 ip~~~~~~~~i~~~~p~~ 337 (510)
+|.||.++++ +++||++
T Consensus 292 iP~~~a~~~~-lk~Lp~~ 308 (308)
T KOG1597|consen 292 IPSWYANAVP-LKNLPGP 308 (308)
T ss_pred Chhhhccccc-hhhcCCC
Confidence 9999999999 9999974
|
|
| >PRK00423 tfb transcription initiation factor IIB; Reviewed | Back alignment and domain information |
|---|
| >COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] | Back alignment and domain information |
|---|
| >KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] | Back alignment and domain information |
|---|
| >PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >KOG0835 consensus Cyclin L [General function prediction only] | Back alignment and domain information |
|---|
| >PF00382 TFIIB: Transcription factor TFIIB repeat; InterPro: IPR013150 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >TIGR00569 ccl1 cyclin ccl1 | Back alignment and domain information |
|---|
| >COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK00423 tfb transcription initiation factor IIB; Reviewed | Back alignment and domain information |
|---|
| >PF08271 TF_Zn_Ribbon: TFIIB zinc-binding; InterPro: IPR013137 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule | Back alignment and domain information |
|---|
| >KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] | Back alignment and domain information |
|---|
| >cd00043 CYCLIN Cyclin box fold | Back alignment and domain information |
|---|
| >smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma | Back alignment and domain information |
|---|
| >cd00043 CYCLIN Cyclin box fold | Back alignment and domain information |
|---|
| >smart00385 CYCLIN domain present in cyclins, TFIIB and Retinoblastoma | Back alignment and domain information |
|---|
| >COG1405 SUA7 Transcription initiation factor TFIIIB, Brf1 subunit/Transcription initiation factor TFIIB [Transcription] | Back alignment and domain information |
|---|
| >KOG1597 consensus Transcription initiation factor TFIIB [Transcription] | Back alignment and domain information |
|---|
| >KOG0656 consensus G1/S-specific cyclin D [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >KOG0653 consensus Cyclin B and related kinase-activating proteins [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >KOG1598 consensus Transcription initiation factor TFIIIB, Brf1 subunit [Transcription] | Back alignment and domain information |
|---|
| >PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation | Back alignment and domain information |
|---|
| >COG5024 Cyclin [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >KOG0655 consensus G1/S-specific cyclin E [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >KOG0835 consensus Cyclin L [General function prediction only] | Back alignment and domain information |
|---|
| >PF00134 Cyclin_N: Cyclin, N-terminal domain; InterPro: IPR006671 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >TIGR02393 RpoD_Cterm RNA polymerase sigma factor RpoD, C-terminal domain | Back alignment and domain information |
|---|
| >TIGR00569 ccl1 cyclin ccl1 | Back alignment and domain information |
|---|
| >PF02984 Cyclin_C: Cyclin, C-terminal domain; InterPro: IPR004367 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >PF01857 RB_B: Retinoblastoma-associated protein B domain; InterPro: IPR002719 Retinoblastoma-like and retinoblastoma-associated proteins may have a function in cell cycle regulation | Back alignment and domain information |
|---|
| >TIGR01206 lysW lysine biosynthesis protein LysW | Back alignment and domain information |
|---|
| >PRK05657 RNA polymerase sigma factor RpoS; Validated | Back alignment and domain information |
|---|
| >PRK07405 RNA polymerase sigma factor SigD; Validated | Back alignment and domain information |
|---|
| >PRK09210 RNA polymerase sigma factor RpoD; Validated | Back alignment and domain information |
|---|
| >KOG0834 consensus CDK9 kinase-activating protein cyclin T [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[] | Back alignment and domain information |
|---|
| >PRK05911 RNA polymerase sigma factor sigma-28; Reviewed | Back alignment and domain information |
|---|
| >TIGR02394 rpoS_proteo RNA polymerase sigma factor RpoS | Back alignment and domain information |
|---|
| >PRK05901 RNA polymerase sigma factor; Provisional | Back alignment and domain information |
|---|
| >TIGR02997 Sig70-cyanoRpoD RNA polymerase sigma factor, cyanobacterial RpoD-like family | Back alignment and domain information |
|---|
| >PRK05949 RNA polymerase sigma factor; Validated | Back alignment and domain information |
|---|
| >PHA00626 hypothetical protein | Back alignment and domain information |
|---|
| >PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >PRK07921 RNA polymerase sigma factor SigB; Reviewed | Back alignment and domain information |
|---|
| >TIGR02392 rpoH_proteo alternative sigma factor RpoH | Back alignment and domain information |
|---|
| >PRK00464 nrdR transcriptional regulator NrdR; Validated | Back alignment and domain information |
|---|
| >PRK07406 RNA polymerase sigma factor RpoD; Validated | Back alignment and domain information |
|---|
| >PRK00415 rps27e 30S ribosomal protein S27e; Reviewed | Back alignment and domain information |
|---|
| >COG2051 RPS27A Ribosomal protein S27E [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >PF13248 zf-ribbon_3: zinc-ribbon domain | Back alignment and domain information |
|---|
| >COG5333 CCL1 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
| >PRK07408 RNA polymerase sigma factor SigF; Reviewed | Back alignment and domain information |
|---|
| >KOG1010 consensus Rb (Retinoblastoma tumor suppressor)-related protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PRK07598 RNA polymerase sigma factor SigC; Validated | Back alignment and domain information |
|---|
| >PF08613 Cyclin: Cyclin; InterPro: IPR013922 Cyclins are eukaryotic proteins that play an active role in controlling nuclear cell division cycles [], and regulate cyclin dependent kinases (CDKs) | Back alignment and domain information |
|---|
| >TIGR00244 transcriptional regulator NrdR | Back alignment and domain information |
|---|
| >COG1191 FliA DNA-directed RNA polymerase specialized sigma subunit [Transcription] | Back alignment and domain information |
|---|
| >PTZ00083 40S ribosomal protein S27; Provisional | Back alignment and domain information |
|---|
| >PF01667 Ribosomal_S27e: Ribosomal protein S27; InterPro: IPR000592 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
| >PF13240 zinc_ribbon_2: zinc-ribbon domain | Back alignment and domain information |
|---|
| >KOG4164 consensus Cyclin ik3-1/CABLES [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF05460 ORC6: Origin recognition complex subunit 6 (ORC6); InterPro: IPR008721 The Origin Recognition Complex (ORC) is a six-subunit ATP-dependent DNA-binding complex encoded in yeast by ORC1-6 [] | Back alignment and domain information |
|---|
| >TIGR02098 MJ0042_CXXC MJ0042 family finger-like domain | Back alignment and domain information |
|---|
| >PLN00209 ribosomal protein S27; Provisional | Back alignment and domain information |
|---|
| >PRK00420 hypothetical protein; Validated | Back alignment and domain information |
|---|
| >PF13613 HTH_Tnp_4: Helix-turn-helix of DDE superfamily endonuclease | Back alignment and domain information |
|---|
| >PRK07500 rpoH2 RNA polymerase factor sigma-32; Reviewed | Back alignment and domain information |
|---|
| >TIGR02885 spore_sigF RNA polymerase sigma-F factor | Back alignment and domain information |
|---|
| >PRK07670 RNA polymerase sigma factor SigD; Validated | Back alignment and domain information |
|---|
| >PF10571 UPF0547: Uncharacterised protein family UPF0547; InterPro: IPR018886 This domain may well be a type of zinc-finger as it carries two pairs of highly conserved cysteine residues though with no accompanying histidines | Back alignment and domain information |
|---|
| >KOG4557 consensus Origin recognition complex, subunit 6 [Replication, recombination and repair] | Back alignment and domain information |
|---|
| >PRK06288 RNA polymerase sigma factor WhiG; Reviewed | Back alignment and domain information |
|---|
| >PF14803 Nudix_N_2: Nudix N-terminal; PDB: 3CNG_C | Back alignment and domain information |
|---|
| >PF04545 Sigma70_r4: Sigma-70, region 4; InterPro: IPR007630 The bacterial core RNA polymerase complex, which consists of five subunits, is sufficient for transcription elongation and termination but is unable to initiate transcription | Back alignment and domain information |
|---|
| >PRK00432 30S ribosomal protein S27ae; Validated | Back alignment and domain information |
|---|
| >PRK08215 sporulation sigma factor SigG; Reviewed | Back alignment and domain information |
|---|
| >COG1998 RPS31 Ribosomal protein S27AE [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
| >KOG0654 consensus G2/Mitotic-specific cyclin A [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
| >PF13730 HTH_36: Helix-turn-helix domain | Back alignment and domain information |
|---|
| >PF09538 FYDLN_acid: Protein of unknown function (FYDLN_acid); InterPro: IPR012644 Members of this family are bacterial proteins with a conserved motif [KR]FYDLN, sometimes flanked by a pair of CXXC motifs, followed by a long region of low complexity sequence in which roughly half the residues are Asp and Glu, including multiple runs of five or more acidic residues | Back alignment and domain information |
|---|
| >COG1645 Uncharacterized Zn-finger containing protein [General function prediction only] | Back alignment and domain information |
|---|
| >PF03966 Trm112p: Trm112p-like protein; InterPro: IPR005651 This family of short proteins have no known function | Back alignment and domain information |
|---|
| >PF08792 A2L_zn_ribbon: A2L zinc ribbon domain; InterPro: IPR014900 This zinc ribbon protein is found associated with some viral A2L transcription factors [] | Back alignment and domain information |
|---|
| >smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein | Back alignment and domain information |
|---|
| >PF13404 HTH_AsnC-type: AsnC-type helix-turn-helix domain; PDB: 2ZNY_E 2ZNZ_G 1RI7_A 2CYY_A 2E1C_A 2VC1_B 2QZ8_A 2W29_C 2IVM_B 2VBX_B | Back alignment and domain information |
|---|
| >smart00661 RPOL9 RNA polymerase subunit 9 | Back alignment and domain information |
|---|
| >PF01325 Fe_dep_repress: Iron dependent repressor, N-terminal DNA binding domain; InterPro: IPR022687 The DtxR-type HTH domain is a DNA-binding, winged helix-turn-helix (wHTH) domain of about 65 residues present in metalloregulators of the DtxR/MntR family | Back alignment and domain information |
|---|
| >PRK11827 hypothetical protein; Provisional | Back alignment and domain information |
|---|
| >PRK05658 RNA polymerase sigma factor RpoD; Validated | Back alignment and domain information |
|---|
| >PF13412 HTH_24: Winged helix-turn-helix DNA-binding; PDB: 1I1G_B 2IA0_B 3I4P_A 2GQQ_A 2L4A_A 2CFX_B 2DBB_B 2EFO_A 2EFQ_A 2PN6_A | Back alignment and domain information |
|---|
| >PF08279 HTH_11: HTH domain; InterPro: IPR013196 Winged helix DNA-binding proteins share a related winged helix-turn-helix DNA-binding motif, where the "wings", or loops, are small beta-sheets | Back alignment and domain information |
|---|
| >KOG2496 consensus Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH/TFIIK, cyclin H subunit [Cell cycle control, cell division, chromosome partitioning; Transcription; Replication, recombination and repair] | Back alignment and domain information |
|---|
| >TIGR02479 FliA_WhiG RNA polymerase sigma factor, FliA/WhiG family | Back alignment and domain information |
|---|
| >TIGR02850 spore_sigG RNA polymerase sigma-G factor | Back alignment and domain information |
|---|
| >PRK00135 scpB segregation and condensation protein B; Reviewed | Back alignment and domain information |
|---|
| >PF13384 HTH_23: Homeodomain-like domain; PDB: 2X48_C | Back alignment and domain information |
|---|
| >smart00342 HTH_ARAC helix_turn_helix, arabinose operon control protein | Back alignment and domain information |
|---|
| >COG1327 Predicted transcriptional regulator, consists of a Zn-ribbon and ATP-cone domains [Transcription] | Back alignment and domain information |
|---|
| >PF13936 HTH_38: Helix-turn-helix domain; PDB: 2W48_A | Back alignment and domain information |
|---|
| >PF13542 HTH_Tnp_ISL3: Helix-turn-helix domain of transposase family ISL3 | Back alignment and domain information |
|---|
| >KOG0794 consensus CDK8 kinase-activating protein cyclin C [Transcription] | Back alignment and domain information |
|---|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 510 | ||||
| 1c9b_A | 207 | Crystal Structure Of A Human Tbp Core Domain-Human | 9e-26 | ||
| 1tfb_A | 208 | Nmr Studies Of Human General Transcription Factor T | 1e-25 | ||
| 2phg_A | 206 | Model For Vp16 Binding To Tfiib Length = 206 | 1e-25 | ||
| 1vol_A | 204 | Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEME | 2e-25 | ||
| 1d3u_B | 201 | Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+T | 4e-17 | ||
| 1ais_B | 200 | Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA- | 5e-17 | ||
| 3k7a_M | 345 | Crystal Structure Of An Rna Polymerase Ii-Tfiib Com | 4e-10 |
| >pdb|1C9B|A Chain A, Crystal Structure Of A Human Tbp Core Domain-Human Tfiib Core Domain Complex Bound To An Extended, Modified Adenoviral Major Late Promoter (Admlp) Length = 207 | Back alignment and structure |
|
| >pdb|1TFB|A Chain A, Nmr Studies Of Human General Transcription Factor Tfiib: Dynamics And Interaction With Vp16 Activation Domain, 20 Structures Length = 208 | Back alignment and structure |
| >pdb|2PHG|A Chain A, Model For Vp16 Binding To Tfiib Length = 206 | Back alignment and structure |
| >pdb|1VOL|A Chain A, Tfiib (Human Core Domain)TBP (A.THALIANA)TATA ELEMENT Ternary Complex Length = 204 | Back alignment and structure |
| >pdb|1D3U|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BBRE+TATA- Box Complex From Pyrococcus Woesei Length = 201 | Back alignment and structure |
| >pdb|1AIS|B Chain B, Tata-Binding ProteinTRANSCRIPTION FACTOR (II)BTATA-Box Complex From Pyrococcus Woesei Length = 200 | Back alignment and structure |
| >pdb|3K7A|M Chain M, Crystal Structure Of An Rna Polymerase Ii-Tfiib Complex Length = 345 | Back alignment and structure |
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 | Back alignment and structure |
|---|
Score = 162 bits (410), Expect = 3e-47
Identities = 55/188 (29%), Positives = 99/188 (52%)
Query: 134 RAYLQIIDVASILGLDYDICDHAFQLFRDCCSATCLRNRSVEALATAALVQAIREAQEPR 193
A ++ + + L L + + A +L+R+ +R RS+E++ A + A R + PR
Sbjct: 11 FALSELDRITAQLKLPRHVEEEAARLYREAVRKGLIRGRSIESVMAACVYAACRLLKVPR 70
Query: 194 TLQEISIAANVPQKEIGKYIKILGEALQLSQPINSNSIAVHMPRFCTLLQLNKSAQVLAT 253
TL EI+ A V +KEIG+ + + L L+ ++ +F L L++ + A
Sbjct: 71 TLDEIADIARVDKKEIGRSYRFIARNLNLTPKKLFVKPTDYVNKFADELGLSEKVRRRAI 130
Query: 254 HIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVYKELL 313
I + + + ++P + AAA+Y+A LE +++TQ E+ +V +TEVT+R YKEL+
Sbjct: 131 EILDEAYKRGLTSGKSPAGLVAAALYIASLLEGEKRTQREVAEVARVTEVTVRNRYKELV 190
Query: 314 ENWDDLLP 321
E +P
Sbjct: 191 EKLKIKVP 198
|
| >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 | Back alignment and structure |
|---|
| >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* Length = 200 | Back alignment and structure |
|---|
| >1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* Length = 207 | Back alignment and structure |
|---|
| >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} Length = 345 | Back alignment and structure |
|---|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
| >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} Length = 197 | Back alignment and structure |
|---|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| 4bbr_M | 345 | Transcription initiation factor IIB; RNA polymeras | 100.0 | |
| 3k7a_M | 345 | Transcription initiation factor IIB; RNA polymeras | 100.0 | |
| 1ais_B | 200 | TFB TFIIB, protein (transcription initiation facto | 100.0 | |
| 1c9b_A | 207 | General transcription factor IIB; protein-DNA comp | 100.0 | |
| 1zp2_A | 235 | RNA polymerase II holoenzyme cyclin-like subunit; | 99.93 | |
| 2i53_A | 258 | Cyclin K; cell cycle, transcription, cyclin BOX, C | 99.89 | |
| 2ivx_A | 257 | Cyclin-T2; transcription regulation, cell division | 99.89 | |
| 3rgf_B | 285 | Cyclin-C; protein kinase complex, transferase,tran | 99.88 | |
| 2b9r_A | 269 | Human cyclin B1; cell cycle; 2.90A {Homo sapiens} | 99.86 | |
| 2cch_B | 260 | Cyclin A2, cyclin-A; complex(transferase/cell divi | 99.85 | |
| 2pk2_A | 358 | Cyclin-T1, protein TAT; TAR, twinning, transcripti | 99.84 | |
| 2w96_A | 271 | G1/S-specific cyclin-D1; serine/threonine-protein | 99.83 | |
| 1jkw_A | 323 | Cyclin H; cell cycle, cell division, nuclear prote | 99.8 | |
| 1g3n_C | 257 | V-cyclin; cyclin-dependent kinase, INK4 inhibitor, | 99.79 | |
| 2f2c_A | 254 | Cyclin homolog, V-cyclin; small molecule inhibitor | 99.78 | |
| 1w98_B | 283 | Cyclin E, G1/S-specific cyclin E1; cell cycle, tra | 99.73 | |
| 3g33_B | 306 | CCND3 protein; Ser/Thr protein kinase, cell cycle, | 99.73 | |
| 3k1f_M | 197 | Transcription initiation factor IIB; RNA polymeras | 99.51 | |
| 1dl6_A | 58 | Transcription factor II B (TFIIB); zinc ribbon, ge | 99.49 | |
| 1ais_B | 200 | TFB TFIIB, protein (transcription initiation facto | 99.41 | |
| 1f5q_B | 252 | Gamma herpesvirus cyclin; herpesviral cyclin, cycl | 99.28 | |
| 1c9b_A | 207 | General transcription factor IIB; protein-DNA comp | 99.18 | |
| 1pft_A | 50 | TFIIB, PFTFIIBN; N-terminal domain, transcription | 99.17 | |
| 4bbr_M | 345 | Transcription initiation factor IIB; RNA polymeras | 98.98 | |
| 3k7a_M | 345 | Transcription initiation factor IIB; RNA polymeras | 98.62 | |
| 1zp2_A | 235 | RNA polymerase II holoenzyme cyclin-like subunit; | 98.05 | |
| 3h4c_A | 260 | Transcription factor TFIIB-like; cyclin, transcrip | 97.62 | |
| 2i53_A | 258 | Cyclin K; cell cycle, transcription, cyclin BOX, C | 97.5 | |
| 2ivx_A | 257 | Cyclin-T2; transcription regulation, cell division | 97.45 | |
| 1jkw_A | 323 | Cyclin H; cell cycle, cell division, nuclear prote | 97.42 | |
| 3rgf_B | 285 | Cyclin-C; protein kinase complex, transferase,tran | 97.35 | |
| 2b9r_A | 269 | Human cyclin B1; cell cycle; 2.90A {Homo sapiens} | 97.13 | |
| 2w96_A | 271 | G1/S-specific cyclin-D1; serine/threonine-protein | 96.96 | |
| 2pk2_A | 358 | Cyclin-T1, protein TAT; TAR, twinning, transcripti | 96.94 | |
| 2cch_B | 260 | Cyclin A2, cyclin-A; complex(transferase/cell divi | 96.92 | |
| 3m03_A | 95 | ORC6, origin recognition complex subunit 6; helix | 96.87 | |
| 1g3n_C | 257 | V-cyclin; cyclin-dependent kinase, INK4 inhibitor, | 96.67 | |
| 1w98_B | 283 | Cyclin E, G1/S-specific cyclin E1; cell cycle, tra | 96.63 | |
| 4ell_A | 411 | Retinoblastoma-associated protein; cyclin fold, tu | 96.43 | |
| 2r7g_A | 347 | PP110, retinoblastoma-associated protein, P105-RB, | 96.31 | |
| 2f2c_A | 254 | Cyclin homolog, V-cyclin; small molecule inhibitor | 96.23 | |
| 4elj_A | 656 | Retinoblastoma-associated protein; cyclin fold, tu | 95.88 | |
| 2qdj_A | 304 | Retinoblastoma-associated protein; cyclin fold, cy | 95.3 | |
| 3g33_B | 306 | CCND3 protein; Ser/Thr protein kinase, cell cycle, | 95.28 | |
| 3m03_A | 95 | ORC6, origin recognition complex subunit 6; helix | 93.48 | |
| 2pk7_A | 69 | Uncharacterized protein; NESG, PLR1, putative tetr | 91.79 | |
| 4elj_A | 656 | Retinoblastoma-associated protein; cyclin fold, tu | 91.69 | |
| 2hf1_A | 68 | Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A | 91.54 | |
| 2js4_A | 70 | UPF0434 protein BB2007; NESG, northeast structural | 91.5 | |
| 2jr6_A | 68 | UPF0434 protein NMA0874; solution, structural geno | 91.26 | |
| 1l9z_H | 438 | Sigma factor SIGA; helix-turn-helix, coiled-coil, | 91.1 | |
| 2jny_A | 67 | Uncharacterized BCR; structure, CGR1, NESG, struct | 91.04 | |
| 1qxf_A | 66 | GR2, 30S ribosomal protein S27E; structural genomi | 90.96 | |
| 2r7g_A | 347 | PP110, retinoblastoma-associated protein, P105-RB, | 90.53 | |
| 2lnb_A | 80 | Z-DNA-binding protein 1; structural genomics, nort | 90.08 | |
| 3j20_W | 63 | 30S ribosomal protein S27E; archaea, archaeal, KIN | 89.58 | |
| 1f5q_B | 252 | Gamma herpesvirus cyclin; herpesviral cyclin, cycl | 89.42 | |
| 2xzm_6 | 81 | RPS27E; ribosome, translation; 3.93A {Tetrahymena | 88.79 | |
| 3u5c_b | 82 | RP61, YS20, 40S ribosomal protein S27-A; translati | 88.5 | |
| 3j20_Y | 50 | 30S ribosomal protein S27AE; archaea, archaeal, KI | 87.76 | |
| 3iz6_X | 86 | 40S ribosomal protein S27 (S27E); eukaryotic ribos | 87.14 | |
| 1vq8_Z | 83 | 50S ribosomal protein L37AE; ribosome 50S, protein | 86.27 | |
| 2pmi_B | 293 | PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de | 84.55 | |
| 2jpc_A | 61 | SSRB; DNA binding protein, structural genomics, PS | 84.34 | |
| 1je8_A | 82 | Nitrate/nitrite response regulator protein NARL; p | 83.5 | |
| 2w7n_A | 101 | TRFB transcriptional repressor protein; INCP, plas | 82.87 | |
| 2jt1_A | 77 | PEFI protein; solution structure, winged helix-tur | 82.71 | |
| 3h4c_A | 260 | Transcription factor TFIIB-like; cyclin, transcrip | 82.56 | |
| 2qdj_A | 304 | Retinoblastoma-associated protein; cyclin fold, cy | 82.12 | |
| 3ulq_B | 90 | Transcriptional regulatory protein COMA; tetratric | 81.83 | |
| 1fse_A | 74 | GERE; helix-turn-helix DNA-binding protein transcr | 81.67 | |
| 2pmi_B | 293 | PHO85 cyclin PHO80, aminoglycoside anti; cyclin-de | 81.66 | |
| 2o8x_A | 70 | Probable RNA polymerase sigma-C factor; promoter r | 81.66 | |
| 2k4x_A | 55 | 30S ribosomal protein S27AE; metal-binding, ribonu | 81.12 | |
| 2p7v_B | 68 | Sigma-70, RNA polymerase sigma factor RPOD; RSD, r | 81.07 | |
| 1x3u_A | 79 | Transcriptional regulatory protein FIXJ; helix-tur | 81.04 | |
| 1tc3_C | 51 | Protein (TC3 transposase); DNA binding, helix-turn | 80.45 |
| >4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M | Back alignment and structure |
|---|
Probab=100.00 E-value=3.3e-69 Score=557.06 Aligned_cols=309 Identities=20% Similarity=0.283 Sum_probs=169.2
Q ss_pred CCCCCCCCC-CCcccccCCCCccccccccceecccceeecccccccccCCCCcccccCCCCCCCCCCCCCCCCCCCCCCC
Q 046187 1 MKCPYCSAA-QGRCATTSTGRSITECGSCGRVIAERQCQNHHLFHIRAQDTPLCLVTSDLPSIPQPQQNDGVDEDPFQPT 79 (510)
Q Consensus 1 m~Cp~C~~~-~~~i~D~~~Gd~~~VC~~CG~Vleer~Id~~~EwR~fs~d~~~~~~~~d~p~~~~d~sRvg~~~dP~l~~ 79 (510)
++||+|+.. +.+++|+.+|+ +||++||+||+|++||+++|||+|++|+ ++ +.|++|||++.||++.+
T Consensus 22 ~~Cp~C~~~~~~lv~D~~~G~--~vC~~CGlVl~e~~iD~g~EWR~f~~d~----~~------~~d~sRvG~~~~~~~~~ 89 (345)
T 4bbr_M 22 LTCPECKVYPPKIVERFSEGD--VVCALCGLVLSDKLVDTRSEWRTFSNDD----HN------GDDPSRVGEASNPLLDG 89 (345)
T ss_dssp CCCSSCCCSSCCEEEEGGGTE--EEETTTCBEEESCCBCHHHHHTTTSCSC----SS------SCCSSCCEEEECHHHHC
T ss_pred CcCCCCCCCCCceeEECCCCc--EEeCCCCCCccCcccccCccccCCCccc----cc------CCCcCCCCCCCCccccC
Confidence 479999984 44568999999 9999999999999999999999999875 12 44679999999999999
Q ss_pred CccceeecccCCCCcccccccccccchhhHHHHHHHhhcCCCCCCCchhhHHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Q 046187 80 GFITAFSAWSLVPSPLFLRSSHSFSGQLAELERTFELLSSSTTSTSSSVMMDNLRAYLQIIDVASILGLDYDICDHAFQL 159 (510)
Q Consensus 80 ~~~tt~i~~~~~~npl~~~T~i~f~~~~~eL~R~~~~s~~~~~~~~~~~~er~L~a~~~I~~ic~~L~LP~~VidtA~~L 159 (510)
.+++|.|++....+. ...++|.|+|+++.+++ .++. +..+|..|.+||++|+||+.|+|+|++|
T Consensus 90 ~glsT~I~~~~~~~~----------~~~~~L~r~q~r~~~~~--~er~----L~~a~~~I~~~~~~L~Lp~~v~d~A~~l 153 (345)
T 4bbr_M 90 NNLSTRIGKGETTDM----------RFTKELNKAQGKNVMDK--KDNE----VQAAFAKITMLCDAAELPKIVKDCAKEA 153 (345)
T ss_dssp SCCCCEEECCSSCCH----------HHHHHHHHHHHHTCCCC--SSSS----TTHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred CCcceeecCCCCcch----------hhHHHHHHHHHhhhcCh--HHHH----HHHHHHHHHHHHHHcCCCHHHHHHHHHH
Confidence 888888876522110 01367999999987766 5665 4669999999999999999999999999
Q ss_pred HHHHHhCCccCCccHHHHHHHHHHHHHHhcCCCCCHHHHHHHhCCCHHHHHHHHHHHHHHhcccC----------CCCCc
Q 046187 160 FRDCCSATCLRNRSVEALATAALVQAIREAQEPRTLQEISIAANVPQKEIGKYIKILGEALQLSQ----------PINSN 229 (510)
Q Consensus 160 yK~a~e~~~lrGRs~eaVaAACLYIACR~~~~PrTLkEIa~vt~VskkeIgr~yk~L~k~L~i~~----------pv~~~ 229 (510)
|++++++++++||+.+.++|||||+|||++++||||+||+++++|++++|+++|+.|.++|++.. .+...
T Consensus 154 yk~a~~~~~~rGrs~e~vaAAclYiACR~~~~prtl~eI~~~~~v~~keigr~~k~l~~~L~l~~~~~~~~~~~~~~~~~ 233 (345)
T 4bbr_M 154 YKLCHDEKTLKGKSMESIMAASILIGCRRAEVARTFKEIQSLIHVKTKEFGKTLNIMKNILRGKSEDGFLKIDTDNMSGA 233 (345)
T ss_dssp HHHHTTCTTTTTCCHHHHHHHHHHHHHHHTCCBCCHHHHHHHHTCCTTHHHHHHHHHHHCC-------------------
T ss_pred HHHHHhcCCccCCCHHHHHHHHHHHHHHhcCCCccHHHHHHHhCCCHHHHHHHHHHHHHHhCccccccccccccccCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999741 12334
Q ss_pred chhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 230 ~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrY 309 (510)
+|++||+|||++|+|+.++.+.|++|++++.+.|++.||+|.+|||||||||++++|.++|++||++++|||++|||++|
T Consensus 234 ~p~~~i~Rf~s~L~l~~~v~~~A~~i~~~~~~~~i~~GR~P~~IAAAaIylAa~l~g~~~t~~eIa~v~~Vse~TIr~ry 313 (345)
T 4bbr_M 234 QNLTYIPRFCSHLGLPMQVTTSAEYTAKKCKEIKEIAGKSPITIAVVSIYLNILLFQIPITAAKVGQTLQVTEGTIKSGY 313 (345)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcccccCCChHHHHHHHHHHHHHHhCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 69999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCC-CCCccCCCc
Q 046187 310 KELLENWDDLLPSNYTPAV-PPEKAFPTT 337 (510)
Q Consensus 310 KEL~e~l~~Lip~~~~~~~-~i~~~~p~~ 337 (510)
|||+++++.|+|++|+... .-++.||..
T Consensus 314 kel~~~~~~l~~~~~~~~~~~~~~~l~~~ 342 (345)
T 4bbr_M 314 KILYEHRDKLVDPQLIANGVVSLDNLPGV 342 (345)
T ss_dssp -----------------------------
T ss_pred HHHHHHHHhhcCHHHhhcccCchhhCCCc
Confidence 9999999999999997753 226777754
|
| >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* | Back alignment and structure |
|---|
| >1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* | Back alignment and structure |
|---|
| >1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* | Back alignment and structure |
|---|
| >3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* | Back alignment and structure |
|---|
| >2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... | Back alignment and structure |
|---|
| >2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C | Back alignment and structure |
|---|
| >2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A | Back alignment and structure |
|---|
| >1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A | Back alignment and structure |
|---|
| >1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A | Back alignment and structure |
|---|
| >1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3k1f_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, transcription factor, DNA-binding, DNA-directed RNA polymerase; 4.30A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1dl6_A Transcription factor II B (TFIIB); zinc ribbon, gene regulation; NMR {Homo sapiens} SCOP: g.41.3.1 PDB: 1rly_A 1ro4_A | Back alignment and structure |
|---|
| >1ais_B TFB TFIIB, protein (transcription initiation factor IIB); hyperthermophIle, ribosome binding, complex (ribosome binding/ DNA); HET: DNA 5IU; 2.10A {Pyrococcus woesei} SCOP: a.74.1.2 a.74.1.2 PDB: 1d3u_B* | Back alignment and structure |
|---|
| >1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >1c9b_A General transcription factor IIB; protein-DNA complex, cyclin-like fold, helix-turn-helix, transcription/DNA complex; 2.65A {Homo sapiens} SCOP: a.74.1.2 a.74.1.2 PDB: 1tfb_A 2phg_A 1vol_A* | Back alignment and structure |
|---|
| >1pft_A TFIIB, PFTFIIBN; N-terminal domain, transcription initiation factor; NMR {Pyrococcus furiosus} SCOP: g.41.3.1 | Back alignment and structure |
|---|
| >4bbr_M Transcription initiation factor IIB; RNA polymerase, TFIIB; 3.40A {Saccharomyces cerevisiae} PDB: 3k7a_M 4bbs_M | Back alignment and structure |
|---|
| >3k7a_M Transcription initiation factor IIB; RNA polymerase II, TFIIB, DNA-binding, DNA- directed RNA polymerase, isopeptide bond, magnesium; 3.80A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
| >1zp2_A RNA polymerase II holoenzyme cyclin-like subunit; cyclin repeat domains, transcription-cell cycle complex; 3.00A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
| >3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} | Back alignment and structure |
|---|
| >2i53_A Cyclin K; cell cycle, transcription, cyclin BOX, CDK9, positive transcription elongation factor, P-TEFB; 1.50A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >2ivx_A Cyclin-T2; transcription regulation, cell division, phosphorylation, NU protein, cell cycle, transcription; 1.8A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_A 3mi9_B* 3mia_B* 3tnh_B* 3tni_B* 3blh_B* 3blq_B* 3blr_B* 3lq5_B* 3my1_B* 3tn8_B* | Back alignment and structure |
|---|
| >1jkw_A Cyclin H; cell cycle, cell division, nuclear protein; 2.60A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1kxu_A | Back alignment and structure |
|---|
| >3rgf_B Cyclin-C; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
| >2b9r_A Human cyclin B1; cell cycle; 2.90A {Homo sapiens} PDB: 2jgz_B* | Back alignment and structure |
|---|
| >2w96_A G1/S-specific cyclin-D1; serine/threonine-protein kinase, chromosomal rearrangement, ATP-binding, transferase, polymorphism, cell division; 2.30A {Homo sapiens} PDB: 2w99_A 2w9f_A 2w9z_A | Back alignment and structure |
|---|
| >2pk2_A Cyclin-T1, protein TAT; TAR, twinning, transcription regulation P- TEFB, cell cycle; 2.67A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 2w2h_C | Back alignment and structure |
|---|
| >2cch_B Cyclin A2, cyclin-A; complex(transferase/cell division), ATP-binding, CDK2, cell cycle, cyclin, mitosis, nuclear protein; HET: TPO ATP; 1.7A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 PDB: 1fvv_B* 1jsu_B* 1okv_B 1okw_B* 1ol1_B* 1ol2_B* 1urc_B 1fin_B* 2c5p_B* 2c5o_B* 2i40_B* 2wev_B* 2wfy_B 2whb_B* 3eid_B* 3ej1_B* 3eoc_B* 2wha_B* 2x1n_B* 1vyw_B* ... | Back alignment and structure |
|---|
| >3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >1g3n_C V-cyclin; cyclin-dependent kinase, INK4 inhibitor, viral cyclin, cell cycle, signaling protein; 2.90A {Human herpesvirus 8} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >1w98_B Cyclin E, G1/S-specific cyclin E1; cell cycle, transferase; HET: TPO; 2.15A {Homo sapiens} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >4ell_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor, cell cycle; 1.98A {Homo sapiens} | Back alignment and structure |
|---|
| >2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B | Back alignment and structure |
|---|
| >2f2c_A Cyclin homolog, V-cyclin; small molecule inhibitor bound between N-terminal and C-TERM domain of kinase, cell cycle-transferase complex; HET: AP9; 2.80A {Herpesvirus saimiri} SCOP: a.74.1.1 a.74.1.1 PDB: 1jow_A* 2euf_A* 1xo2_A* 1bu2_A | Back alignment and structure |
|---|
| >4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3g33_B CCND3 protein; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3m03_A ORC6, origin recognition complex subunit 6; helix turn helix, DNA binding protein, origin recognition CO DNA replication; HET: MES; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
| >2pk7_A Uncharacterized protein; NESG, PLR1, putative tetraacyldisaccharide-1-P 4-kinase, Q4K structural genomics, PSI-2; 2.20A {Pseudomonas fluorescens} SCOP: b.171.1.1 | Back alignment and structure |
|---|
| >4elj_A Retinoblastoma-associated protein; cyclin fold, tumor suppressor protein, phosphorylation, cell; HET: TPO; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
| >2hf1_A Tetraacyldisaccharide-1-P 4-kinase; LPXK, lipid A biosynthes structural genomics, PSI-2, protein structure initiative; 1.90A {Chromobacterium violaceum} SCOP: b.171.1.1 | Back alignment and structure |
|---|
| >2js4_A UPF0434 protein BB2007; NESG, northeast structural genomics consortium, beta, PSI-2, protein structure initiative; NMR {Bordetella bronchiseptica RB50} | Back alignment and structure |
|---|
| >2jr6_A UPF0434 protein NMA0874; solution, structural genomics, PSI, structure initiative, northeast structural genomics consort NESG; NMR {Neisseria meningitidis} | Back alignment and structure |
|---|
| >1l9z_H Sigma factor SIGA; helix-turn-helix, coiled-coil, transcription/DNA complex; 6.50A {Thermus aquaticus} SCOP: i.8.1.1 | Back alignment and structure |
|---|
| >2jny_A Uncharacterized BCR; structure, CGR1, NESG, structural genomics, PSI-2, protein structure initiative; NMR {Corynebacterium glutamicum} SCOP: b.171.1.1 | Back alignment and structure |
|---|
| >1qxf_A GR2, 30S ribosomal protein S27E; structural genomics, beta sheet, PSI, protein structure initiative; NMR {Archaeoglobus fulgidus} SCOP: g.41.8.4 | Back alignment and structure |
|---|
| >2r7g_A PP110, retinoblastoma-associated protein, P105-RB, RB; retinoblastoma protein, E2F displacement, transcription repressor; 1.67A {Homo sapiens} SCOP: a.74.1.3 a.74.1.3 PDB: 1n4m_A 3pom_A 1gh6_B 1gux_A 1o9k_A 1ad6_A 1gux_B 1o9k_B | Back alignment and structure |
|---|
| >2lnb_A Z-DNA-binding protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, immune system; NMR {Homo sapiens} | Back alignment and structure |
|---|
| >3j20_W 30S ribosomal protein S27E; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >1f5q_B Gamma herpesvirus cyclin; herpesviral cyclin, cyclin dependent kinase. protein/protein complex, transferase; 2.50A {Murid herpesvirus 4} SCOP: a.74.1.1 a.74.1.1 | Back alignment and structure |
|---|
| >2xzm_6 RPS27E; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_6 | Back alignment and structure |
|---|
| >3u5c_b RP61, YS20, 40S ribosomal protein S27-A; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_X 3u5g_b | Back alignment and structure |
|---|
| >3j20_Y 30S ribosomal protein S27AE; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus} | Back alignment and structure |
|---|
| >3iz6_X 40S ribosomal protein S27 (S27E); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum} | Back alignment and structure |
|---|
| >1vq8_Z 50S ribosomal protein L37AE; ribosome 50S, protein-protein complex, RNA-RNA complex, PROT complex, peptidyl transferase reaction; HET: 1MA OMU OMG UR3 PSU SPS; 2.20A {Haloarcula marismortui} SCOP: g.41.8.1 PDB: 1vq4_Z* 1vq6_Z* 1vq5_Z* 1vq7_Z* 1vq9_Z* 1vqk_Z* 1vql_Z* 1vqm_Z* 1vqn_Z* 1vqo_Z* 1vqp_Z* 1yhq_Z* 1yi2_Z* 1yij_Z* 1yit_Z* 1yj9_Z* 1yjn_Z* 1yjw_Z* 2qa4_Z* 1s72_Z* ... | Back alignment and structure |
|---|
| >2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* | Back alignment and structure |
|---|
| >2jpc_A SSRB; DNA binding protein, structural genomics, PSI-2, protein structure initiative; NMR {Salmonella typhimurium} | Back alignment and structure |
|---|
| >1je8_A Nitrate/nitrite response regulator protein NARL; protein-DNA complex, two-component response regulator, helix-turn-helix, DNA bending; 2.12A {Escherichia coli} SCOP: a.4.6.2 PDB: 1zg1_A 1zg5_A | Back alignment and structure |
|---|
| >2w7n_A TRFB transcriptional repressor protein; INCP, plasmid, repressor, DNA-binding, transcription/DNA; HET: BRU; 1.85A {Escherichia coli} | Back alignment and structure |
|---|
| >2jt1_A PEFI protein; solution structure, winged helix-turn-helix, transcripti regulatory protein, structural genomics, PSI-2; NMR {Salmonella typhimurium LT2} | Back alignment and structure |
|---|
| >3h4c_A Transcription factor TFIIB-like; cyclin, transcription factor TFIIB repeat; 2.30A {Trypanosoma brucei brucei} | Back alignment and structure |
|---|
| >2qdj_A Retinoblastoma-associated protein; cyclin fold, cyclin wedge, antitumor protein; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
| >3ulq_B Transcriptional regulatory protein COMA; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} PDB: 2krf_A | Back alignment and structure |
|---|
| >1fse_A GERE; helix-turn-helix DNA-binding protein transcriptional regulat transcription; 2.05A {Bacillus subtilis} SCOP: a.4.6.2 | Back alignment and structure |
|---|
| >2pmi_B PHO85 cyclin PHO80, aminoglycoside anti; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_B* | Back alignment and structure |
|---|
| >2o8x_A Probable RNA polymerase sigma-C factor; promoter recognition, transcription regulation, helix-turn-H motif, transcription; 3.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
| >2k4x_A 30S ribosomal protein S27AE; metal-binding, ribonucleoprotein, zinc, zinc-finger, structural genomics, PSI-2; NMR {Thermoplasma acidophilum} SCOP: g.41.8.8 | Back alignment and structure |
|---|
| >2p7v_B Sigma-70, RNA polymerase sigma factor RPOD; RSD, regulator of sigma 70, sigma 70 domain 4, transcription, regulation, helix-turn-helix; 2.60A {Escherichia coli} SCOP: a.4.13.2 | Back alignment and structure |
|---|
| >1x3u_A Transcriptional regulatory protein FIXJ; helix-turn-helix; NMR {Sinorhizobium meliloti} | Back alignment and structure |
|---|
| >1tc3_C Protein (TC3 transposase); DNA binding, helix-turn-helix, TC1/mariner family, complex (transposase/DNA), DNA binding protein/DNA complex; HET: DNA; 2.45A {Caenorhabditis elegans} SCOP: a.4.1.2 | Back alignment and structure |
|---|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 510 | ||||
| d1vola2 | 109 | a.74.1.2 (A:208-316) Transcription factor IIB (TFI | 4e-25 | |
| d1vola2 | 109 | a.74.1.2 (A:208-316) Transcription factor IIB (TFI | 7e-12 | |
| d1aisb1 | 98 | a.74.1.2 (B:1108-1205) Transcription factor IIB (T | 4e-19 | |
| d1aisb1 | 98 | a.74.1.2 (B:1108-1205) Transcription factor IIB (T | 8e-17 | |
| d1aisb2 | 95 | a.74.1.2 (B:1206-1300) Transcription factor IIB (T | 4e-19 | |
| d1aisb2 | 95 | a.74.1.2 (B:1206-1300) Transcription factor IIB (T | 1e-13 | |
| d1vola1 | 95 | a.74.1.2 (A:113-207) Transcription factor IIB (TFI | 8e-16 | |
| d1vola1 | 95 | a.74.1.2 (A:113-207) Transcription factor IIB (TFI | 3e-14 |
| >d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cyclin-like superfamily: Cyclin-like family: Transcription factor IIB (TFIIB), core domain domain: Transcription factor IIB (TFIIB), core domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 97.6 bits (243), Expect = 4e-25
Identities = 37/98 (37%), Positives = 58/98 (59%)
Query: 235 MPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEI 294
M RFC+ L L K Q+ ATHI + R+PIS++AAAIY+A Q +++TQ EI
Sbjct: 8 MSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEI 67
Query: 295 CKVTGLTEVTLRKVYKELLENWDDLLPSNYTPAVPPEK 332
+ G+ +VT+R+ Y+ + DL P+++ P +K
Sbjct: 68 GDIAGVADVTIRQSYRLIYPRAPDLFPTDFKFDTPVDK 105
|
| >d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 109 | Back information, alignment and structure |
|---|
| >d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 | Back information, alignment and structure |
|---|
| >d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 98 | Back information, alignment and structure |
|---|
| >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 95 | Back information, alignment and structure |
|---|
| >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} Length = 95 | Back information, alignment and structure |
|---|
| >d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
| >d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} Length = 95 | Back information, alignment and structure |
|---|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 510 | |||
| d1vola2 | 109 | Transcription factor IIB (TFIIB), core domain {Hum | 99.89 | |
| d1aisb2 | 95 | Transcription factor IIB (TFIIB), core domain {Arc | 99.85 | |
| d1vola1 | 95 | Transcription factor IIB (TFIIB), core domain {Hum | 99.84 | |
| d1aisb1 | 98 | Transcription factor IIB (TFIIB), core domain {Arc | 99.83 | |
| d1aisb2 | 95 | Transcription factor IIB (TFIIB), core domain {Arc | 99.77 | |
| d1vola2 | 109 | Transcription factor IIB (TFIIB), core domain {Hum | 99.73 | |
| d1aisb1 | 98 | Transcription factor IIB (TFIIB), core domain {Arc | 99.69 | |
| d1vola1 | 95 | Transcription factor IIB (TFIIB), core domain {Hum | 99.68 | |
| d1dl6a_ | 58 | Transcription initiation factor TFIIB, N-terminal | 99.52 | |
| d1pfta_ | 50 | Transcription initiation factor TFIIB, N-terminal | 99.43 | |
| d2ivxa1 | 143 | Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | 98.69 | |
| d2i53a1 | 144 | Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | 98.66 | |
| d1jkwa1 | 151 | Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 | 98.57 | |
| d2ivxa2 | 113 | Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | 98.36 | |
| d2i53a2 | 110 | Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | 98.18 | |
| d2cchb1 | 128 | Cyclin A {Cow (Bos taurus) [TaxId: 9913]} | 97.78 | |
| d1bu2a1 | 127 | Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} | 97.73 | |
| d1g3nc1 | 132 | Viral cyclin {Kaposi's sarcoma-associated herpesvi | 97.6 | |
| d1w98b2 | 140 | G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax | 97.55 | |
| d1f5qb1 | 141 | Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] | 97.43 | |
| d2ivxa1 | 143 | Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | 96.92 | |
| d2cchb2 | 124 | Cyclin A {Cow (Bos taurus) [TaxId: 9913]} | 96.89 | |
| d2r7ga2 | 142 | Retinoblastoma tumor suppressor domains {Human (Ho | 96.88 | |
| d2i53a1 | 144 | Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | 96.82 | |
| d2ivxa2 | 113 | Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | 96.49 | |
| d1jkwa1 | 151 | Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 | 96.4 | |
| d2i53a2 | 110 | Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | 95.39 | |
| d2cchb1 | 128 | Cyclin A {Cow (Bos taurus) [TaxId: 9913]} | 95.03 | |
| d1f5qb1 | 141 | Viral cyclin {Murine herpesvirus 68 [TaxId: 33708] | 94.49 | |
| d1bu2a1 | 127 | Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} | 94.49 | |
| d1jkwa2 | 126 | Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 | 94.2 | |
| d1g3nc1 | 132 | Viral cyclin {Kaposi's sarcoma-associated herpesvi | 93.61 | |
| d1w98b2 | 140 | G1/S-specific cyclin-E1 {Human (Homo sapiens) [Tax | 92.96 | |
| d1qxfa_ | 58 | Ribosomal protein S27e {Archaeon Archaeoglobus ful | 91.71 | |
| d2jnya1 | 59 | Uncharacterized protein Cgl1405/cg1592 {Corynebact | 88.66 | |
| d2r7ga2 | 142 | Retinoblastoma tumor suppressor domains {Human (Ho | 88.24 | |
| d1jkwa2 | 126 | Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606 | 88.02 | |
| d2pk7a1 | 59 | Uncharacterized protein PFL1779 {Pseudomonas fluor | 85.92 | |
| d2hf1a1 | 59 | Hypothetical protein CV3345 {Chromobacterium viola | 85.21 | |
| d1fsea_ | 67 | Germination protein GerE {Bacillus subtilis [TaxId | 84.71 | |
| d1l3la1 | 65 | Quorum-sensing transcription factor TraR, C-termin | 84.15 | |
| d1i1ga1 | 60 | LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 83.4 | |
| d2cfxa1 | 63 | Transcriptional regulator LrpC {Bacillus subtilis | 81.86 | |
| d1yioa1 | 70 | Response regulatory protein StyR, C-terminal domai | 81.84 | |
| d1hw1a1 | 74 | Fatty acid responsive transcription factor FadR, N | 81.55 | |
| d1or7a1 | 68 | SigmaE factor (RpoE) {Escherichia coli [TaxId: 562 | 80.54 | |
| d2cyya1 | 60 | Putative transcriptional regulator PH1519 {Archaeo | 80.51 | |
| d2gaua1 | 81 | Transcriptional regulator PG0396, C-terminal domai | 80.39 | |
| d1a04a1 | 67 | Nitrate/nitrite response regulator (NarL) {Escheri | 80.15 |
| >d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: Cyclin-like superfamily: Cyclin-like family: Transcription factor IIB (TFIIB), core domain domain: Transcription factor IIB (TFIIB), core domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.89 E-value=1.7e-23 Score=180.39 Aligned_cols=106 Identities=35% Similarity=0.600 Sum_probs=102.0
Q ss_pred chhhhHHHHHhhcCCCHHHHHHHHHHHHHHHhccccCCCChHHHHHHHHHHHHHHcCCCCCHHHHHHHhCCCHHHHHHHH
Q 046187 230 SIAVHMPRFCTLLQLNKSAQVLATHIGEVVINKCFCTRRNPISISAAAIYLACQLEDKRKTQAEICKVTGLTEVTLRKVY 309 (510)
Q Consensus 230 ~p~~~I~Rfcs~L~L~~~V~~~A~~Ia~~a~~~~l~~GRsP~sIAAAaIYlAarl~g~~~t~keIa~vagVSe~TIRkrY 309 (510)
+|.+||+|||++|+|++++.+.|.+|++.+.+.+++.||+|.+|||||||+||+++|.+++++||++++||++.||+++|
T Consensus 3 ~~~d~i~Rf~s~L~L~~~i~~~A~~i~~~~~~~~~~~Gr~p~~iaAa~iY~a~r~~~~~~t~~eIa~~~~vs~~tI~k~y 82 (109)
T d1vola2 3 TTGDFMSRFCSNLCLPKQVQMAATHIARKAVELDLVPGRSPISVAAAAIYMASQASAEKRTQKEIGDIAGVADVTIRQSY 82 (109)
T ss_dssp CGGGTHHHHHHHHTCCHHHHHHHHHHHHHHHHTTCSTTCCHHHHHHHHHHHHHHTSSSCCCHHHHHHHHTCCHHHHHHHH
T ss_pred CHHHHHHHHHHHcCcCHHHHHHHHHHHHHHHHcCCcCCCCHHHHHHHHHHHHHHHcCCCCCHHHHHHHHCCCHHHHHHHH
Confidence 48999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcccCCCCCCCCCCCCccCCC
Q 046187 310 KELLENWDDLLPSNYTPAVPPEKAFPT 336 (510)
Q Consensus 310 KEL~e~l~~Lip~~~~~~~~i~~~~p~ 336 (510)
|+|+++++.++|++|....+ .+.||.
T Consensus 83 k~l~~~~~~lip~~~~~~~~-~~~lP~ 108 (109)
T d1vola2 83 RLIYPRAPDLFPTDFKFDTP-VDKLPQ 108 (109)
T ss_dssp HHHGGGHHHHSCSSCCCSSC-GGGSCC
T ss_pred HHHHHHHHHhCChhhcccCC-HHHcCC
Confidence 99999999999999988877 778874
|
| >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
| >d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
| >d1aisb2 a.74.1.2 (B:1206-1300) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
| >d1vola2 a.74.1.2 (A:208-316) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1aisb1 a.74.1.2 (B:1108-1205) Transcription factor IIB (TFIIB), core domain {Archaeon Pyrococcus woesei [TaxId: 2262]} | Back information, alignment and structure |
|---|
| >d1vola1 a.74.1.2 (A:113-207) Transcription factor IIB (TFIIB), core domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1dl6a_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
| >d1pfta_ g.41.3.1 (A:) Transcription initiation factor TFIIB, N-terminal domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} | Back information, alignment and structure |
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| >d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} | Back information, alignment and structure |
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| >d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} | Back information, alignment and structure |
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| >d2ivxa1 a.74.1.1 (A:7-149) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cchb2 a.74.1.1 (B:309-432) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2i53a1 a.74.1.1 (A:14-157) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2ivxa2 a.74.1.1 (A:150-262) Cyclin-T2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jkwa1 a.74.1.1 (A:11-161) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2i53a2 a.74.1.1 (A:158-267) Cyclin K {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2cchb1 a.74.1.1 (B:181-308) Cyclin A {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
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| >d1f5qb1 a.74.1.1 (B:6-146) Viral cyclin {Murine herpesvirus 68 [TaxId: 33708]} | Back information, alignment and structure |
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| >d1bu2a1 a.74.1.1 (A:22-148) Viral cyclin {Herpesvirus saimiri [TaxId: 10381]} | Back information, alignment and structure |
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| >d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1g3nc1 a.74.1.1 (C:16-147) Viral cyclin {Kaposi's sarcoma-associated herpesvirus [TaxId: 37296]} | Back information, alignment and structure |
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| >d1w98b2 a.74.1.1 (B:88-227) G1/S-specific cyclin-E1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1qxfa_ g.41.8.4 (A:) Ribosomal protein S27e {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
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| >d2jnya1 b.171.1.1 (A:1-59) Uncharacterized protein Cgl1405/cg1592 {Corynebacterium glutamicum [TaxId: 1718]} | Back information, alignment and structure |
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| >d2r7ga2 a.74.1.3 (A:644-785) Retinoblastoma tumor suppressor domains {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d1jkwa2 a.74.1.1 (A:162-287) Cyclin H (mcs2) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
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| >d2pk7a1 b.171.1.1 (A:3-61) Uncharacterized protein PFL1779 {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
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| >d2hf1a1 b.171.1.1 (A:2-60) Hypothetical protein CV3345 {Chromobacterium violaceum [TaxId: 536]} | Back information, alignment and structure |
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| >d1fsea_ a.4.6.2 (A:) Germination protein GerE {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1l3la1 a.4.6.2 (A:170-234) Quorum-sensing transcription factor TraR, C-terminal domain {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
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| >d1i1ga1 a.4.5.32 (A:2-61) LprA {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
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| >d2cfxa1 a.4.5.32 (A:1-63) Transcriptional regulator LrpC {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
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| >d1yioa1 a.4.6.2 (A:131-200) Response regulatory protein StyR, C-terminal domain {Pseudomonas fluorescens [TaxId: 294]} | Back information, alignment and structure |
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| >d1hw1a1 a.4.5.6 (A:5-78) Fatty acid responsive transcription factor FadR, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d1or7a1 a.4.13.2 (A:120-187) SigmaE factor (RpoE) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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| >d2cyya1 a.4.5.32 (A:5-64) Putative transcriptional regulator PH1519 {Archaeon Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
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| >d2gaua1 a.4.5.4 (A:152-232) Transcriptional regulator PG0396, C-terminal domain {Porphyromonas gingivalis [TaxId: 837]} | Back information, alignment and structure |
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| >d1a04a1 a.4.6.2 (A:150-216) Nitrate/nitrite response regulator (NarL) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
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